Query psy13077
Match_columns 630
No_of_seqs 176 out of 714
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 18:51:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3moe_A Phosphoenolpyruvate car 100.0 1E-224 3E-229 1811.1 53.7 609 18-630 14-623 (624)
2 2faf_A Phosphoenolpyruvate car 100.0 2E-216 7E-221 1745.0 55.0 604 23-630 2-607 (608)
3 2zci_A Phosphoenolpyruvate car 100.0 5E-213 2E-217 1721.8 54.3 588 28-630 15-607 (610)
4 1j3b_A ATP-dependent phosphoen 100.0 9E-115 3E-119 954.7 33.1 492 39-619 5-523 (529)
5 2olr_A Phosphoenolpyruvate car 100.0 7E-100 2E-104 835.1 38.2 478 38-609 12-521 (540)
6 1ytm_A Phosphoenolpyruvate car 100.0 4.1E-98 1E-102 823.0 39.1 478 37-611 6-517 (532)
7 1ii2_A Phosphoenolpyruvate car 100.0 2.7E-98 9E-103 823.8 34.1 484 46-619 1-513 (524)
8 3tqf_A HPR(Ser) kinase; transf 96.8 0.00087 3E-08 65.1 4.4 58 268-336 5-64 (181)
9 1ko7_A HPR kinase/phosphatase; 96.4 0.0023 7.9E-08 66.9 4.8 70 256-335 120-192 (314)
10 2qmh_A HPR kinase/phosphorylas 96.3 0.0026 9.1E-08 62.8 4.2 63 265-335 20-82 (205)
11 1knx_A Probable HPR(Ser) kinas 96.2 0.0022 7.6E-08 67.0 3.6 92 230-336 103-195 (312)
12 4gp7_A Metallophosphoesterase; 93.8 0.019 6.4E-07 53.4 1.5 22 280-303 7-28 (171)
13 3uie_A Adenylyl-sulfate kinase 93.7 0.024 8.3E-07 53.5 2.2 21 280-302 23-43 (200)
14 3tr0_A Guanylate kinase, GMP k 93.6 0.029 9.8E-07 52.4 2.5 21 280-302 5-25 (205)
15 1kgd_A CASK, peripheral plasma 93.4 0.03 1E-06 52.2 2.3 20 281-302 4-23 (180)
16 1zp6_A Hypothetical protein AT 93.2 0.03 1E-06 51.7 1.9 38 280-319 7-45 (191)
17 1znw_A Guanylate kinase, GMP k 93.0 0.038 1.3E-06 52.6 2.3 21 280-302 18-38 (207)
18 2j41_A Guanylate kinase; GMP, 92.8 0.045 1.5E-06 51.0 2.5 22 280-303 4-25 (207)
19 2qor_A Guanylate kinase; phosp 92.7 0.038 1.3E-06 52.4 1.9 20 281-302 11-30 (204)
20 4eun_A Thermoresistant glucoki 92.7 0.045 1.6E-06 51.6 2.3 22 280-303 27-48 (200)
21 3c8u_A Fructokinase; YP_612366 92.6 0.042 1.4E-06 52.3 2.0 21 280-302 20-40 (208)
22 1s96_A Guanylate kinase, GMP k 92.5 0.049 1.7E-06 53.4 2.4 21 280-302 14-34 (219)
23 1z6g_A Guanylate kinase; struc 92.4 0.043 1.5E-06 53.1 1.9 21 280-302 21-41 (218)
24 3asz_A Uridine kinase; cytidin 92.3 0.044 1.5E-06 51.6 1.8 22 280-303 4-25 (211)
25 1knq_A Gluconate kinase; ALFA/ 92.3 0.053 1.8E-06 49.6 2.2 21 280-302 6-26 (175)
26 3tau_A Guanylate kinase, GMP k 92.3 0.056 1.9E-06 51.6 2.5 21 280-302 6-26 (208)
27 3ec2_A DNA replication protein 92.3 0.04 1.4E-06 50.8 1.3 21 280-302 36-56 (180)
28 3vaa_A Shikimate kinase, SK; s 92.2 0.057 1.9E-06 50.9 2.3 21 280-302 23-43 (199)
29 1kag_A SKI, shikimate kinase I 92.1 0.049 1.7E-06 49.5 1.7 20 282-303 4-23 (173)
30 1qhx_A CPT, protein (chloramph 92.1 0.057 1.9E-06 49.3 2.1 19 282-302 3-21 (178)
31 1lvg_A Guanylate kinase, GMP k 91.8 0.052 1.8E-06 51.6 1.6 20 281-302 3-22 (198)
32 3lnc_A Guanylate kinase, GMP k 91.7 0.054 1.9E-06 52.2 1.6 21 280-302 25-45 (231)
33 4a74_A DNA repair and recombin 91.7 0.05 1.7E-06 51.3 1.3 21 280-302 23-43 (231)
34 2ehv_A Hypothetical protein PH 91.6 0.062 2.1E-06 51.3 1.9 21 280-302 28-48 (251)
35 3tif_A Uncharacterized ABC tra 91.4 0.079 2.7E-06 52.3 2.5 21 280-302 29-49 (235)
36 3a00_A Guanylate kinase, GMP k 91.4 0.063 2.2E-06 50.1 1.7 18 283-302 2-19 (186)
37 2cvh_A DNA repair and recombin 91.1 0.087 3E-06 49.4 2.3 21 280-302 18-38 (220)
38 3fvq_A Fe(3+) IONS import ATP- 90.9 0.087 3E-06 55.9 2.3 21 280-302 28-48 (359)
39 2kjq_A DNAA-related protein; s 90.6 0.099 3.4E-06 47.9 2.1 21 281-303 35-55 (149)
40 4g1u_C Hemin import ATP-bindin 90.6 0.11 3.6E-06 52.5 2.5 21 280-302 35-55 (266)
41 2bdt_A BH3686; alpha-beta prot 90.5 0.075 2.6E-06 49.3 1.3 34 283-319 3-37 (189)
42 2pcj_A ABC transporter, lipopr 90.5 0.086 3E-06 51.5 1.8 21 280-302 28-48 (224)
43 2pez_A Bifunctional 3'-phospho 90.5 0.094 3.2E-06 48.3 1.9 22 280-303 3-24 (179)
44 2w0m_A SSO2452; RECA, SSPF, un 90.4 0.09 3.1E-06 49.3 1.7 21 280-302 21-41 (235)
45 2cbz_A Multidrug resistance-as 90.4 0.11 3.8E-06 51.2 2.5 22 280-303 29-50 (237)
46 1b0u_A Histidine permease; ABC 90.3 0.12 4E-06 52.0 2.5 21 280-302 30-50 (262)
47 1n0w_A DNA repair protein RAD5 90.2 0.095 3.3E-06 49.9 1.7 21 280-302 22-42 (243)
48 3lw7_A Adenylate kinase relate 90.2 0.091 3.1E-06 46.7 1.5 17 287-303 4-20 (179)
49 2yyz_A Sugar ABC transporter, 90.2 0.12 3.9E-06 54.8 2.5 21 280-302 27-47 (359)
50 3rlf_A Maltose/maltodextrin im 90.1 0.12 4E-06 55.4 2.5 21 280-302 27-47 (381)
51 2v9p_A Replication protein E1; 90.1 0.1 3.5E-06 54.1 2.0 22 280-303 124-145 (305)
52 2it1_A 362AA long hypothetical 90.1 0.12 4E-06 54.8 2.5 21 280-302 27-47 (362)
53 2x8a_A Nuclear valosin-contain 90.0 0.11 3.7E-06 52.3 2.0 24 276-303 40-63 (274)
54 3kb2_A SPBC2 prophage-derived 89.9 0.11 3.8E-06 46.6 1.8 14 289-302 6-19 (173)
55 1htw_A HI0065; nucleotide-bind 89.9 0.12 4.1E-06 48.2 2.1 21 280-302 31-51 (158)
56 1v43_A Sugar-binding transport 89.9 0.13 4.3E-06 54.8 2.5 21 280-302 35-55 (372)
57 3tqc_A Pantothenate kinase; bi 89.9 0.13 4.3E-06 53.7 2.4 21 282-302 90-110 (321)
58 3trf_A Shikimate kinase, SK; a 89.9 0.13 4.3E-06 47.4 2.2 19 282-302 5-23 (185)
59 3d31_A Sulfate/molybdate ABC t 89.8 0.11 3.8E-06 54.7 2.0 21 280-302 24-44 (348)
60 1uj2_A Uridine-cytidine kinase 89.8 0.12 4E-06 50.8 2.0 21 282-302 20-40 (252)
61 1kht_A Adenylate kinase; phosp 89.7 0.13 4.4E-06 47.0 2.2 19 282-302 3-21 (192)
62 1oxx_K GLCV, glucose, ABC tran 89.6 0.11 3.7E-06 54.8 1.7 21 280-302 29-49 (353)
63 1z47_A CYSA, putative ABC-tran 89.6 0.12 4E-06 54.7 2.0 21 280-302 39-59 (355)
64 1ixz_A ATP-dependent metallopr 89.6 0.12 4.2E-06 50.2 1.9 22 277-302 46-67 (254)
65 2pze_A Cystic fibrosis transme 89.6 0.12 4.2E-06 50.6 2.0 21 280-302 32-52 (229)
66 2ff7_A Alpha-hemolysin translo 89.5 0.12 4.2E-06 51.3 2.0 21 280-302 33-53 (247)
67 1mv5_A LMRA, multidrug resista 89.5 0.13 4.5E-06 50.8 2.1 21 280-302 26-46 (243)
68 2olj_A Amino acid ABC transpor 89.4 0.15 5.1E-06 51.4 2.5 21 280-302 48-68 (263)
69 2qt1_A Nicotinamide riboside k 89.4 0.16 5.4E-06 47.8 2.5 22 280-303 19-40 (207)
70 1g29_1 MALK, maltose transport 89.3 0.13 4.3E-06 54.7 2.0 21 280-302 27-47 (372)
71 2rhm_A Putative kinase; P-loop 89.3 0.13 4.5E-06 47.2 1.9 19 282-302 5-23 (193)
72 3ney_A 55 kDa erythrocyte memb 89.3 0.15 5E-06 49.7 2.2 20 281-302 18-37 (197)
73 2ghi_A Transport protein; mult 89.3 0.15 5.3E-06 51.0 2.5 22 280-303 44-65 (260)
74 1ji0_A ABC transporter; ATP bi 89.3 0.13 4.5E-06 50.7 2.0 21 280-302 30-50 (240)
75 2wwf_A Thymidilate kinase, put 89.2 0.15 5.1E-06 47.7 2.2 20 281-302 9-28 (212)
76 2ixe_A Antigen peptide transpo 89.2 0.16 5.4E-06 51.3 2.5 22 280-303 43-64 (271)
77 1g6h_A High-affinity branched- 89.1 0.14 4.7E-06 51.1 2.0 21 280-302 31-51 (257)
78 3gfo_A Cobalt import ATP-bindi 89.0 0.14 4.9E-06 52.0 2.0 21 280-302 32-52 (275)
79 2zu0_C Probable ATP-dependent 88.9 0.17 5.7E-06 50.9 2.5 21 280-302 44-64 (267)
80 3gd7_A Fusion complex of cysti 88.9 0.15 5.3E-06 54.4 2.3 22 280-303 45-66 (390)
81 2d2e_A SUFC protein; ABC-ATPas 88.9 0.15 5E-06 50.7 2.0 22 280-303 27-48 (250)
82 1nn5_A Similar to deoxythymidy 88.9 0.17 5.8E-06 47.3 2.3 20 281-302 8-27 (215)
83 1odf_A YGR205W, hypothetical 3 88.8 0.17 5.8E-06 51.7 2.4 20 283-302 30-49 (290)
84 3aez_A Pantothenate kinase; tr 88.8 0.15 5.2E-06 52.6 2.1 21 280-302 88-108 (312)
85 3iij_A Coilin-interacting nucl 88.8 0.16 5.5E-06 46.6 2.0 19 282-302 11-29 (180)
86 1cke_A CK, MSSA, protein (cyti 88.7 0.16 5.6E-06 48.1 2.1 19 283-303 6-24 (227)
87 1vpl_A ABC transporter, ATP-bi 88.6 0.18 6.2E-06 50.6 2.5 21 280-302 39-59 (256)
88 1rz3_A Hypothetical protein rb 88.6 0.16 5.6E-06 48.0 2.0 38 280-319 20-60 (201)
89 2yz2_A Putative ABC transporte 88.5 0.19 6.4E-06 50.5 2.5 21 280-302 31-51 (266)
90 2dr3_A UPF0273 protein PH0284; 88.5 0.14 4.8E-06 48.7 1.5 21 280-302 21-41 (247)
91 1nlf_A Regulatory protein REPA 88.5 0.14 4.8E-06 50.9 1.6 21 280-302 28-48 (279)
92 3bos_A Putative DNA replicatio 88.5 0.2 6.8E-06 47.0 2.6 20 281-302 51-70 (242)
93 1rj9_A FTSY, signal recognitio 88.5 0.19 6.6E-06 51.7 2.6 36 281-319 101-140 (304)
94 1ly1_A Polynucleotide kinase; 88.4 0.18 6.1E-06 45.6 2.1 16 287-302 5-20 (181)
95 1y63_A LMAJ004144AAA protein; 88.4 0.19 6.6E-06 46.7 2.4 22 280-303 8-29 (184)
96 2ihy_A ABC transporter, ATP-bi 88.4 0.16 5.6E-06 51.5 2.0 21 280-302 45-65 (279)
97 2jeo_A Uridine-cytidine kinase 88.3 0.17 5.9E-06 49.3 2.0 22 280-303 23-44 (245)
98 2vp4_A Deoxynucleoside kinase; 88.3 0.19 6.5E-06 48.7 2.3 22 280-303 18-39 (230)
99 1sgw_A Putative ABC transporte 88.3 0.15 5.1E-06 49.9 1.5 22 280-303 33-54 (214)
100 1gvn_B Zeta; postsegregational 88.2 0.18 6E-06 51.2 2.1 17 286-302 35-51 (287)
101 4e22_A Cytidylate kinase; P-lo 88.1 0.2 6.9E-06 49.4 2.3 22 280-303 25-46 (252)
102 2eyu_A Twitching motility prot 88.0 0.19 6.3E-06 50.5 2.1 38 280-320 23-65 (261)
103 1cr0_A DNA primase/helicase; R 88.0 0.2 7E-06 49.9 2.3 21 280-302 33-53 (296)
104 3b85_A Phosphate starvation-in 87.9 0.2 6.9E-06 48.6 2.2 21 280-302 20-40 (208)
105 1uf9_A TT1252 protein; P-loop, 87.9 0.19 6.6E-06 46.4 2.0 22 282-303 6-27 (203)
106 3t61_A Gluconokinase; PSI-biol 87.8 0.17 6E-06 47.4 1.6 18 283-302 19-36 (202)
107 2qi9_C Vitamin B12 import ATP- 87.6 0.19 6.7E-06 50.1 2.0 22 280-303 24-45 (249)
108 2nq2_C Hypothetical ABC transp 87.5 0.2 6.7E-06 50.1 1.9 21 280-302 29-49 (253)
109 1jbk_A CLPB protein; beta barr 87.5 0.24 8.2E-06 44.2 2.3 19 282-302 43-61 (195)
110 2p65_A Hypothetical protein PF 87.5 0.21 7.2E-06 44.8 1.9 19 282-302 43-61 (187)
111 2bbs_A Cystic fibrosis transme 87.5 0.22 7.6E-06 50.9 2.3 21 280-302 62-82 (290)
112 1iy2_A ATP-dependent metallopr 87.4 0.21 7.1E-06 49.5 2.0 21 278-302 71-91 (278)
113 3cm0_A Adenylate kinase; ATP-b 87.4 0.18 6.1E-06 46.2 1.4 20 282-303 4-23 (186)
114 2zts_A Putative uncharacterize 87.3 0.2 6.9E-06 47.6 1.8 21 280-302 28-48 (251)
115 2vli_A Antibiotic resistance p 87.3 0.21 7.1E-06 45.6 1.8 20 282-303 5-24 (183)
116 1nks_A Adenylate kinase; therm 87.2 0.22 7.5E-06 45.4 1.9 15 288-302 5-19 (194)
117 1lv7_A FTSH; alpha/beta domain 87.1 0.21 7.1E-06 48.7 1.8 16 285-302 48-63 (257)
118 3lda_A DNA repair protein RAD5 87.1 0.19 6.5E-06 53.8 1.6 21 280-302 176-196 (400)
119 2bbw_A Adenylate kinase 4, AK4 87.0 0.25 8.6E-06 48.0 2.3 19 282-302 27-45 (246)
120 3nh6_A ATP-binding cassette SU 86.9 0.22 7.7E-06 51.4 1.9 22 280-303 78-99 (306)
121 2yvu_A Probable adenylyl-sulfa 86.8 0.25 8.7E-06 45.6 2.1 37 281-319 12-52 (186)
122 2plr_A DTMP kinase, probable t 86.6 0.25 8.4E-06 45.9 1.9 19 282-302 4-22 (213)
123 1m7g_A Adenylylsulfate kinase; 86.5 0.26 8.8E-06 46.8 2.0 22 280-303 23-44 (211)
124 2pjz_A Hypothetical protein ST 86.5 0.28 9.5E-06 49.4 2.3 20 280-302 29-48 (263)
125 3tui_C Methionine import ATP-b 86.5 0.28 9.6E-06 52.2 2.5 21 280-302 52-72 (366)
126 2i3b_A HCR-ntpase, human cance 86.4 0.25 8.5E-06 47.3 1.8 19 282-302 1-19 (189)
127 1ye8_A Protein THEP1, hypothet 86.3 0.27 9.2E-06 46.4 2.0 13 290-302 6-18 (178)
128 2v54_A DTMP kinase, thymidylat 86.0 0.31 1.1E-05 45.2 2.3 19 282-302 4-22 (204)
129 3cf0_A Transitional endoplasmi 86.0 0.31 1.1E-05 49.1 2.5 21 281-303 48-68 (301)
130 2p5t_B PEZT; postsegregational 85.9 0.26 8.8E-06 48.5 1.8 19 282-302 32-50 (253)
131 2c95_A Adenylate kinase 1; tra 85.8 0.32 1.1E-05 44.7 2.2 19 282-302 9-27 (196)
132 1sq5_A Pantothenate kinase; P- 85.7 0.28 9.5E-06 50.0 1.9 20 281-302 79-98 (308)
133 1via_A Shikimate kinase; struc 85.5 0.27 9.2E-06 45.0 1.6 17 285-303 7-23 (175)
134 2jaq_A Deoxyguanosine kinase; 85.4 0.3 1E-05 45.0 1.8 14 290-303 6-19 (205)
135 3h4m_A Proteasome-activating n 85.4 0.36 1.2E-05 47.4 2.5 20 282-303 51-70 (285)
136 3b9p_A CG5977-PA, isoform A; A 85.3 0.37 1.2E-05 47.7 2.5 19 282-302 54-72 (297)
137 1jjv_A Dephospho-COA kinase; P 85.2 0.34 1.2E-05 45.4 2.1 17 287-303 5-21 (206)
138 3nwj_A ATSK2; P loop, shikimat 85.1 0.3 1E-05 48.9 1.8 20 282-303 48-67 (250)
139 2ze6_A Isopentenyl transferase 85.1 0.33 1.1E-05 48.0 2.1 14 289-302 6-19 (253)
140 2w58_A DNAI, primosome compone 85.1 0.36 1.2E-05 45.0 2.2 18 283-302 55-72 (202)
141 1pzn_A RAD51, DNA repair and r 85.0 0.25 8.4E-06 51.6 1.1 21 280-302 129-149 (349)
142 1gtv_A TMK, thymidylate kinase 84.9 0.21 7.1E-06 46.8 0.5 16 287-302 3-18 (214)
143 2onk_A Molybdate/tungstate ABC 84.9 0.37 1.3E-05 47.8 2.3 20 280-302 23-42 (240)
144 3e70_C DPA, signal recognition 84.6 0.36 1.2E-05 50.3 2.2 37 280-319 127-167 (328)
145 2qz4_A Paraplegin; AAA+, SPG7, 84.6 0.41 1.4E-05 46.1 2.5 18 283-302 40-57 (262)
146 3b9q_A Chloroplast SRP recepto 84.4 0.35 1.2E-05 49.6 2.0 21 280-302 98-118 (302)
147 1in4_A RUVB, holliday junction 84.3 0.32 1.1E-05 49.9 1.6 18 284-303 53-70 (334)
148 2qby_A CDC6 homolog 1, cell di 84.2 0.38 1.3E-05 48.4 2.1 21 280-302 43-63 (386)
149 3fb4_A Adenylate kinase; psych 84.1 0.38 1.3E-05 45.3 1.9 47 582-628 163-215 (216)
150 1zd8_A GTP:AMP phosphotransfer 84.1 0.39 1.3E-05 46.0 2.0 19 282-302 7-25 (227)
151 1lw7_A Transcriptional regulat 84.0 0.33 1.1E-05 50.4 1.6 33 21-55 6-38 (365)
152 2bwj_A Adenylate kinase 5; pho 84.0 0.39 1.3E-05 44.2 1.9 19 282-302 12-30 (199)
153 2z0h_A DTMP kinase, thymidylat 84.0 0.38 1.3E-05 44.2 1.9 16 288-303 4-19 (197)
154 3b5x_A Lipid A export ATP-bind 83.9 0.55 1.9E-05 52.1 3.4 22 280-303 367-388 (582)
155 1ex7_A Guanylate kinase; subst 83.9 0.35 1.2E-05 46.5 1.6 16 285-302 4-19 (186)
156 1e6c_A Shikimate kinase; phosp 83.9 0.36 1.2E-05 43.5 1.6 16 285-302 5-20 (173)
157 1tev_A UMP-CMP kinase; ploop, 83.8 0.38 1.3E-05 43.8 1.8 16 287-302 6-21 (196)
158 2f1r_A Molybdopterin-guanine d 83.8 0.3 1E-05 46.1 1.0 15 289-303 7-21 (171)
159 3syl_A Protein CBBX; photosynt 83.7 0.46 1.6E-05 47.1 2.4 19 282-302 67-85 (309)
160 2v1u_A Cell division control p 83.6 0.39 1.3E-05 48.5 1.9 21 280-302 42-62 (387)
161 2r62_A Cell division protease 83.6 0.23 8E-06 48.4 0.2 23 276-302 40-62 (268)
162 1tf7_A KAIC; homohexamer, hexa 83.5 0.35 1.2E-05 52.9 1.6 22 280-303 37-58 (525)
163 1zak_A Adenylate kinase; ATP:A 83.5 0.4 1.4E-05 45.6 1.8 19 282-302 5-23 (222)
164 2iyv_A Shikimate kinase, SK; t 83.3 0.39 1.3E-05 44.1 1.6 16 285-302 5-20 (184)
165 4b4t_J 26S protease regulatory 83.3 0.45 1.5E-05 51.3 2.3 26 274-303 176-201 (405)
166 2dpy_A FLII, flagellum-specifi 83.2 0.42 1.4E-05 51.7 2.0 21 280-302 155-175 (438)
167 1a7j_A Phosphoribulokinase; tr 83.2 0.35 1.2E-05 49.1 1.4 17 286-302 7-23 (290)
168 3t15_A Ribulose bisphosphate c 83.1 0.41 1.4E-05 48.3 1.8 18 284-303 38-55 (293)
169 3dl0_A Adenylate kinase; phosp 82.9 0.45 1.6E-05 44.9 1.9 47 582-628 163-215 (216)
170 1l8q_A Chromosomal replication 82.8 0.43 1.5E-05 48.1 1.8 19 282-302 37-55 (324)
171 2chg_A Replication factor C sm 82.8 0.44 1.5E-05 43.5 1.7 16 285-302 41-56 (226)
172 1ukz_A Uridylate kinase; trans 82.8 0.55 1.9E-05 43.7 2.4 18 285-302 16-33 (203)
173 4a82_A Cystic fibrosis transme 82.7 0.52 1.8E-05 52.3 2.6 22 280-303 365-386 (578)
174 1svm_A Large T antigen; AAA+ f 82.6 0.52 1.8E-05 50.1 2.4 21 280-302 167-187 (377)
175 2pt5_A Shikimate kinase, SK; a 82.6 0.48 1.6E-05 42.6 1.9 16 285-302 3-18 (168)
176 2cdn_A Adenylate kinase; phosp 82.5 0.6 2.1E-05 43.6 2.6 19 282-302 20-38 (201)
177 4b4t_M 26S protease regulatory 82.5 0.44 1.5E-05 51.8 1.8 25 275-303 210-234 (434)
178 3n70_A Transport activator; si 82.4 0.52 1.8E-05 42.2 2.0 20 282-303 24-43 (145)
179 1p9r_A General secretion pathw 82.4 0.55 1.9E-05 50.5 2.5 38 280-320 165-206 (418)
180 2if2_A Dephospho-COA kinase; a 82.4 0.45 1.5E-05 44.4 1.7 15 289-303 6-20 (204)
181 1njg_A DNA polymerase III subu 82.2 0.64 2.2E-05 42.8 2.6 17 284-302 47-63 (250)
182 2gza_A Type IV secretion syste 82.2 0.37 1.3E-05 50.5 1.1 21 280-302 173-193 (361)
183 3uk6_A RUVB-like 2; hexameric 82.1 0.49 1.7E-05 48.1 2.0 19 282-302 70-88 (368)
184 4b4t_K 26S protease regulatory 82.1 0.46 1.6E-05 51.5 1.8 25 275-303 201-225 (428)
185 3bh0_A DNAB-like replicative h 82.1 0.57 2E-05 47.9 2.4 21 280-302 66-86 (315)
186 1aky_A Adenylate kinase; ATP:A 82.1 0.57 2E-05 44.5 2.3 19 282-302 4-22 (220)
187 1v5w_A DMC1, meiotic recombina 82.0 0.47 1.6E-05 49.2 1.8 21 280-302 120-140 (343)
188 1d2n_A N-ethylmaleimide-sensit 81.9 0.47 1.6E-05 46.6 1.7 18 283-302 65-82 (272)
189 4b4t_L 26S protease subunit RP 81.9 0.48 1.6E-05 51.5 1.8 25 275-303 210-234 (437)
190 3b60_A Lipid A export ATP-bind 81.8 0.53 1.8E-05 52.2 2.2 22 280-303 367-388 (582)
191 1sxj_C Activator 1 40 kDa subu 81.8 0.5 1.7E-05 48.2 1.8 17 285-303 49-65 (340)
192 2pbr_A DTMP kinase, thymidylat 81.7 0.54 1.9E-05 42.9 1.9 14 290-303 6-19 (195)
193 1vht_A Dephospho-COA kinase; s 81.6 0.56 1.9E-05 44.4 2.0 18 286-303 6-23 (218)
194 3cr8_A Sulfate adenylyltranfer 81.4 0.39 1.3E-05 53.6 1.0 21 280-302 367-387 (552)
195 3hr8_A Protein RECA; alpha and 81.3 0.44 1.5E-05 50.4 1.2 21 280-302 59-79 (356)
196 1fnn_A CDC6P, cell division co 81.3 0.58 2E-05 47.5 2.1 17 284-302 46-62 (389)
197 2yl4_A ATP-binding cassette SU 81.2 0.59 2E-05 52.0 2.3 22 280-303 368-389 (595)
198 1oix_A RAS-related protein RAB 81.1 0.78 2.7E-05 42.5 2.8 18 285-302 30-47 (191)
199 2z43_A DNA repair and recombin 81.1 0.5 1.7E-05 48.4 1.6 21 280-302 105-125 (324)
200 3exa_A TRNA delta(2)-isopenten 81.1 0.57 1.9E-05 49.2 2.0 17 286-302 5-21 (322)
201 2og2_A Putative signal recogni 80.8 0.66 2.2E-05 49.0 2.4 21 280-302 155-175 (359)
202 4fcw_A Chaperone protein CLPB; 80.7 0.72 2.5E-05 45.6 2.5 18 284-303 49-66 (311)
203 2zr9_A Protein RECA, recombina 80.7 0.52 1.8E-05 49.3 1.6 21 280-302 59-79 (349)
204 1qf9_A UMP/CMP kinase, protein 80.6 0.63 2.1E-05 42.3 1.9 16 287-302 9-24 (194)
205 3qf4_A ABC transporter, ATP-bi 80.6 0.64 2.2E-05 51.8 2.3 22 280-303 367-388 (587)
206 3a4m_A L-seryl-tRNA(SEC) kinas 80.5 0.61 2.1E-05 46.1 1.9 17 284-302 6-22 (260)
207 2ewv_A Twitching motility prot 80.3 0.62 2.1E-05 49.1 2.0 39 280-321 134-177 (372)
208 3kta_A Chromosome segregation 80.3 0.7 2.4E-05 42.3 2.1 17 284-302 28-44 (182)
209 3co5_A Putative two-component 80.3 0.57 2E-05 41.9 1.5 21 283-305 28-48 (143)
210 4eaq_A DTMP kinase, thymidylat 80.2 0.67 2.3E-05 45.2 2.1 20 281-302 25-44 (229)
211 1pui_A ENGB, probable GTP-bind 80.1 0.71 2.4E-05 42.7 2.1 21 280-302 24-44 (210)
212 1np6_A Molybdopterin-guanine d 80.0 0.65 2.2E-05 44.0 1.8 14 289-302 11-24 (174)
213 3eie_A Vacuolar protein sortin 80.0 0.69 2.3E-05 47.0 2.2 19 283-303 52-70 (322)
214 2z4s_A Chromosomal replication 79.9 0.44 1.5E-05 51.2 0.7 20 282-303 130-149 (440)
215 3qf4_B Uncharacterized ABC tra 79.9 0.72 2.5E-05 51.4 2.4 22 280-303 379-400 (598)
216 1zuh_A Shikimate kinase; alpha 79.8 0.72 2.5E-05 41.7 2.0 18 284-303 9-26 (168)
217 2npi_A Protein CLP1; CLP1-PCF1 79.7 0.61 2.1E-05 50.8 1.8 22 280-303 136-157 (460)
218 3be4_A Adenylate kinase; malar 79.7 0.6 2.1E-05 44.5 1.5 20 282-303 5-24 (217)
219 3d3q_A TRNA delta(2)-isopenten 79.7 0.69 2.4E-05 48.7 2.1 17 286-302 9-25 (340)
220 3ux8_A Excinuclease ABC, A sub 79.6 0.65 2.2E-05 52.4 2.0 21 280-302 346-366 (670)
221 3ux8_A Excinuclease ABC, A sub 79.6 0.65 2.2E-05 52.4 2.0 20 280-301 42-61 (670)
222 1xwi_A SKD1 protein; VPS4B, AA 79.6 0.73 2.5E-05 47.2 2.2 18 283-302 46-63 (322)
223 2f6r_A COA synthase, bifunctio 79.6 0.72 2.4E-05 46.4 2.1 19 284-302 75-93 (281)
224 2i1q_A DNA repair and recombin 79.4 0.55 1.9E-05 47.7 1.2 21 280-302 96-116 (322)
225 3jvv_A Twitching mobility prot 79.3 0.71 2.4E-05 48.6 2.1 19 282-302 123-141 (356)
226 1ofh_A ATP-dependent HSL prote 79.3 0.72 2.5E-05 45.3 2.0 18 283-302 51-68 (310)
227 3hws_A ATP-dependent CLP prote 79.3 0.75 2.6E-05 47.3 2.2 20 282-303 51-70 (363)
228 2qby_B CDC6 homolog 3, cell di 79.3 0.77 2.6E-05 46.7 2.3 19 282-302 45-63 (384)
229 1xjc_A MOBB protein homolog; s 79.2 0.71 2.4E-05 43.8 1.8 15 288-302 8-22 (169)
230 2yhs_A FTSY, cell division pro 79.1 0.8 2.8E-05 50.7 2.5 37 280-318 291-330 (503)
231 3zvl_A Bifunctional polynucleo 79.0 0.84 2.9E-05 48.6 2.5 19 282-302 258-276 (416)
232 3m6a_A ATP-dependent protease 79.0 0.76 2.6E-05 50.8 2.2 21 281-303 107-127 (543)
233 1sxj_E Activator 1 40 kDa subu 78.8 0.68 2.3E-05 46.8 1.7 16 285-302 39-54 (354)
234 1vma_A Cell division protein F 78.7 0.83 2.8E-05 47.1 2.3 38 280-319 102-142 (306)
235 3io5_A Recombination and repai 78.7 0.67 2.3E-05 48.8 1.6 20 280-302 27-46 (333)
236 3ake_A Cytidylate kinase; CMP 78.6 0.77 2.6E-05 42.5 1.9 17 287-303 5-21 (208)
237 1q3t_A Cytidylate kinase; nucl 78.6 0.91 3.1E-05 43.8 2.4 20 281-302 15-34 (236)
238 1ltq_A Polynucleotide kinase; 78.4 0.81 2.8E-05 45.4 2.1 15 288-302 6-20 (301)
239 3r20_A Cytidylate kinase; stru 78.2 0.77 2.6E-05 45.7 1.8 17 284-302 11-27 (233)
240 4b4t_H 26S protease regulatory 78.2 0.64 2.2E-05 51.1 1.3 25 275-303 238-262 (467)
241 2obl_A ESCN; ATPase, hydrolase 78.2 0.83 2.8E-05 47.8 2.1 21 280-302 69-89 (347)
242 1u0l_A Probable GTPase ENGC; p 78.1 0.89 3E-05 46.1 2.3 19 282-302 169-187 (301)
243 3tlx_A Adenylate kinase 2; str 77.9 0.86 2.9E-05 44.6 2.0 43 582-624 192-240 (243)
244 2pt7_A CAG-ALFA; ATPase, prote 77.4 0.77 2.6E-05 47.5 1.6 21 280-302 169-189 (330)
245 1yqt_A RNAse L inhibitor; ATP- 77.4 0.97 3.3E-05 50.0 2.5 21 280-302 45-65 (538)
246 3a8t_A Adenylate isopentenyltr 77.2 0.9 3.1E-05 47.9 2.1 17 286-302 42-58 (339)
247 3pih_A Uvrabc system protein A 77.2 0.81 2.8E-05 54.1 1.9 44 270-316 11-66 (916)
248 3pfi_A Holliday junction ATP-d 77.2 0.81 2.8E-05 46.1 1.7 18 284-303 57-74 (338)
249 2qgz_A Helicase loader, putati 77.2 0.94 3.2E-05 46.2 2.2 19 282-302 152-170 (308)
250 2dhr_A FTSH; AAA+ protein, hex 77.1 0.86 2.9E-05 50.2 2.0 24 276-303 60-83 (499)
251 1e4v_A Adenylate kinase; trans 77.0 0.86 2.9E-05 43.1 1.7 24 584-607 161-184 (214)
252 3foz_A TRNA delta(2)-isopenten 77.0 0.91 3.1E-05 47.5 2.0 17 286-302 12-28 (316)
253 3ld9_A DTMP kinase, thymidylat 76.9 1 3.4E-05 44.5 2.2 18 285-302 22-39 (223)
254 2px0_A Flagellar biosynthesis 76.7 1 3.5E-05 46.0 2.3 37 281-319 104-144 (296)
255 4b4t_I 26S protease regulatory 76.6 0.86 2.9E-05 49.7 1.8 25 275-303 211-235 (437)
256 1u94_A RECA protein, recombina 76.6 0.87 3E-05 47.9 1.8 21 280-302 61-81 (356)
257 3ozx_A RNAse L inhibitor; ATP 76.6 0.88 3E-05 50.5 1.9 21 280-302 292-312 (538)
258 3sop_A Neuronal-specific septi 76.6 0.81 2.8E-05 46.0 1.5 16 287-302 5-20 (270)
259 2yv5_A YJEQ protein; hydrolase 76.4 1.1 3.7E-05 45.7 2.3 19 281-301 164-182 (302)
260 2vhj_A Ntpase P4, P4; non- hyd 76.3 0.69 2.4E-05 48.7 0.9 21 280-302 121-141 (331)
261 1ak2_A Adenylate kinase isoenz 76.2 1.2 4E-05 42.9 2.4 43 585-627 182-230 (233)
262 1tue_A Replication protein E1; 76.1 0.99 3.4E-05 44.8 1.9 21 280-302 56-76 (212)
263 3d8b_A Fidgetin-like protein 1 76.1 1.1 3.8E-05 46.3 2.4 20 282-303 117-136 (357)
264 1um8_A ATP-dependent CLP prote 76.0 1.1 3.7E-05 46.4 2.2 19 283-303 73-91 (376)
265 2ce7_A Cell division protein F 75.9 0.96 3.3E-05 49.5 1.9 23 276-302 45-67 (476)
266 1hqc_A RUVB; extended AAA-ATPa 75.8 0.84 2.9E-05 45.4 1.3 19 283-303 39-57 (324)
267 3crm_A TRNA delta(2)-isopenten 75.1 1.1 3.8E-05 46.8 2.1 16 287-302 8-23 (323)
268 3eph_A TRNA isopentenyltransfe 75.0 0.99 3.4E-05 48.8 1.7 17 286-302 4-20 (409)
269 3k1j_A LON protease, ATP-depen 75.0 1 3.4E-05 50.2 1.8 20 281-302 59-78 (604)
270 3j16_B RLI1P; ribosome recycli 74.8 1.2 4.2E-05 50.1 2.5 21 280-302 101-121 (608)
271 2qp9_X Vacuolar protein sortin 74.7 1 3.5E-05 46.7 1.7 17 284-302 86-102 (355)
272 2c9o_A RUVB-like 1; hexameric 74.7 1.1 3.9E-05 47.9 2.1 19 283-303 64-82 (456)
273 3te6_A Regulatory protein SIR3 74.2 1.1 3.6E-05 46.7 1.6 22 279-302 42-63 (318)
274 1zu4_A FTSY; GTPase, signal re 74.2 1.3 4.5E-05 45.8 2.3 38 280-319 103-143 (320)
275 2xb4_A Adenylate kinase; ATP-b 74.1 1.2 4E-05 42.8 1.8 13 290-302 6-18 (223)
276 1sxj_D Activator 1 41 kDa subu 73.9 1.1 3.8E-05 44.9 1.7 16 285-302 61-76 (353)
277 2bjv_A PSP operon transcriptio 73.8 1.3 4.3E-05 43.3 2.0 18 283-302 30-47 (265)
278 1g8f_A Sulfate adenylyltransfe 73.7 1 3.6E-05 49.8 1.5 21 281-303 394-414 (511)
279 1p5z_B DCK, deoxycytidine kina 73.7 1.3 4.3E-05 43.5 1.9 19 285-303 25-43 (263)
280 1tf7_A KAIC; homohexamer, hexa 73.5 1 3.6E-05 49.1 1.5 21 280-302 279-299 (525)
281 1g8p_A Magnesium-chelatase 38 73.4 1 3.5E-05 45.2 1.2 16 285-302 48-63 (350)
282 1ypw_A Transitional endoplasmi 73.2 1.2 4.2E-05 51.5 2.0 22 280-303 236-257 (806)
283 2rcn_A Probable GTPase ENGC; Y 73.2 1.4 4.9E-05 46.6 2.3 20 281-302 214-233 (358)
284 2grj_A Dephospho-COA kinase; T 73.2 1.4 4.8E-05 42.1 2.1 19 285-303 13-31 (192)
285 3pvs_A Replication-associated 73.0 1.3 4.3E-05 48.0 1.9 18 284-303 52-69 (447)
286 2r6a_A DNAB helicase, replicat 72.8 1.4 4.8E-05 47.2 2.2 21 280-302 201-221 (454)
287 3lv8_A DTMP kinase, thymidylat 72.8 1.4 4.9E-05 43.6 2.1 19 282-302 27-45 (236)
288 2gj8_A MNME, tRNA modification 72.5 1.3 4.5E-05 40.2 1.7 20 281-302 3-22 (172)
289 3vfd_A Spastin; ATPase, microt 72.2 1.5 5.1E-05 45.7 2.2 20 282-303 148-167 (389)
290 1sky_E F1-ATPase, F1-ATP synth 72.2 1.4 4.8E-05 48.4 2.1 20 281-302 150-169 (473)
291 2ygr_A Uvrabc system protein A 72.1 1.1 3.8E-05 53.4 1.3 27 274-302 38-64 (993)
292 2vf7_A UVRA2, excinuclease ABC 72.1 1.2 4.1E-05 52.3 1.5 26 275-302 29-54 (842)
293 1sxj_A Activator 1 95 kDa subu 72.1 1.6 5.5E-05 47.5 2.5 19 283-303 78-96 (516)
294 1yqt_A RNAse L inhibitor; ATP- 72.0 1.3 4.6E-05 48.9 1.9 21 280-302 310-330 (538)
295 2q6t_A DNAB replication FORK h 71.9 1.4 4.9E-05 47.0 2.1 21 280-302 198-218 (444)
296 4gzl_A RAS-related C3 botulinu 71.9 1.4 4.9E-05 41.0 1.8 31 268-301 17-47 (204)
297 2zej_A Dardarin, leucine-rich 71.7 1.5 5.3E-05 39.9 2.0 13 290-302 8-20 (184)
298 3bk7_A ABC transporter ATP-bin 71.7 1.6 5.6E-05 49.1 2.5 21 280-302 115-135 (607)
299 3ice_A Transcription terminati 71.5 1.5 5.2E-05 47.5 2.1 22 280-303 172-193 (422)
300 2r6f_A Excinuclease ABC subuni 71.5 1.2 4.1E-05 53.0 1.4 26 275-302 37-62 (972)
301 2r44_A Uncharacterized protein 71.3 1.2 4.1E-05 44.9 1.2 18 283-302 47-64 (331)
302 4f4c_A Multidrug resistance pr 71.1 1.3 4.6E-05 54.0 1.8 22 280-303 442-463 (1321)
303 2zan_A Vacuolar protein sortin 71.1 1.5 5.3E-05 46.9 2.0 19 283-303 168-186 (444)
304 1t9h_A YLOQ, probable GTPase E 71.0 1 3.6E-05 46.5 0.7 20 281-302 172-191 (307)
305 2ocp_A DGK, deoxyguanosine kin 70.9 1.5 5.1E-05 42.3 1.7 17 286-302 4-20 (241)
306 2qag_B Septin-6, protein NEDD5 70.7 1.7 5.8E-05 47.1 2.3 23 280-302 38-60 (427)
307 3euj_A Chromosome partition pr 70.6 1.7 5.9E-05 47.8 2.3 18 283-302 30-47 (483)
308 3j16_B RLI1P; ribosome recycli 70.5 1.8 6.1E-05 48.8 2.5 20 281-302 377-396 (608)
309 2oap_1 GSPE-2, type II secreti 70.4 1.5 5E-05 48.4 1.7 20 280-301 258-277 (511)
310 2chq_A Replication factor C sm 70.3 1.5 5.2E-05 43.1 1.7 16 285-302 41-56 (319)
311 3llm_A ATP-dependent RNA helic 70.3 1.8 6.3E-05 41.6 2.2 20 281-302 75-94 (235)
312 2orw_A Thymidine kinase; TMTK, 70.3 1.7 5.9E-05 41.0 2.0 19 282-302 3-21 (184)
313 1nij_A Hypothetical protein YJ 70.3 1.4 4.7E-05 45.1 1.4 54 289-344 9-69 (318)
314 1xp8_A RECA protein, recombina 70.1 1.5 5E-05 46.4 1.6 21 280-302 72-92 (366)
315 3ozx_A RNAse L inhibitor; ATP 70.0 1.7 5.8E-05 48.2 2.1 21 280-302 23-43 (538)
316 1iqp_A RFCS; clamp loader, ext 69.9 1.6 5.3E-05 43.1 1.7 16 285-302 49-64 (327)
317 2f9l_A RAB11B, member RAS onco 69.5 1.8 6.3E-05 39.9 2.0 16 287-302 8-23 (199)
318 1jr3_A DNA polymerase III subu 69.3 1.9 6.5E-05 43.5 2.2 17 284-302 40-56 (373)
319 1w1w_A Structural maintenance 69.0 2.1 7.2E-05 45.3 2.5 19 281-301 25-43 (430)
320 1qhl_A Protein (cell division 69.0 1.1 3.7E-05 44.3 0.3 12 291-302 34-45 (227)
321 4edh_A DTMP kinase, thymidylat 68.9 1.9 6.4E-05 41.9 1.9 19 282-302 6-24 (213)
322 3cf2_A TER ATPase, transitiona 68.5 2 7E-05 50.1 2.5 25 275-303 233-257 (806)
323 1ls1_A Signal recognition part 68.4 1.7 5.9E-05 44.1 1.6 37 281-319 97-136 (295)
324 3bk7_A ABC transporter ATP-bin 68.0 1.9 6.4E-05 48.6 2.0 21 280-302 380-400 (607)
325 1m8p_A Sulfate adenylyltransfe 67.7 2.1 7.2E-05 47.8 2.3 20 281-302 395-414 (573)
326 4f4c_A Multidrug resistance pr 67.6 1.8 6.2E-05 52.9 1.9 22 280-303 1103-1124(1321)
327 2qen_A Walker-type ATPase; unk 67.6 2.2 7.5E-05 42.3 2.2 18 283-302 32-49 (350)
328 3v9p_A DTMP kinase, thymidylat 67.6 2.1 7.1E-05 42.3 1.9 19 282-302 25-43 (227)
329 2ga8_A Hypothetical 39.9 kDa p 67.2 2.4 8.1E-05 45.1 2.4 22 281-302 21-42 (359)
330 1sxj_B Activator 1 37 kDa subu 67.1 1.9 6.6E-05 42.3 1.7 16 285-302 45-60 (323)
331 3hu3_A Transitional endoplasmi 66.9 2.4 8.2E-05 46.4 2.5 19 283-303 239-257 (489)
332 3kkq_A RAS-related protein M-R 66.8 3.3 0.00011 37.1 3.0 21 282-302 16-36 (183)
333 3th5_A RAS-related C3 botulinu 69.8 1.2 4.1E-05 41.1 0.0 32 268-302 17-48 (204)
334 3g5u_A MCG1178, multidrug resi 66.2 2.3 7.9E-05 51.8 2.4 22 280-303 414-435 (1284)
335 3umf_A Adenylate kinase; rossm 65.9 2.4 8.1E-05 41.6 2.0 47 582-628 162-214 (217)
336 1x6v_B Bifunctional 3'-phospho 65.9 2.4 8.1E-05 48.2 2.2 20 281-302 51-70 (630)
337 2ce2_X GTPase HRAS; signaling 65.2 2.5 8.5E-05 36.5 1.8 15 288-302 7-21 (166)
338 4tmk_A Protein (thymidylate ki 65.0 2.6 9E-05 40.9 2.1 19 282-302 3-21 (213)
339 2wji_A Ferrous iron transport 65.0 3.2 0.00011 37.1 2.5 16 287-302 6-21 (165)
340 1w5s_A Origin recognition comp 64.9 2 6.7E-05 44.0 1.2 21 282-302 50-70 (412)
341 3tmk_A Thymidylate kinase; pho 64.9 2.8 9.4E-05 41.0 2.2 20 281-302 4-23 (216)
342 2qm8_A GTPase/ATPase; G protei 64.7 2.6 8.8E-05 43.7 2.1 37 280-319 53-93 (337)
343 3u61_B DNA polymerase accessor 64.2 2.8 9.7E-05 41.9 2.3 17 284-302 50-66 (324)
344 3cmw_A Protein RECA, recombina 64.1 2.3 7.7E-05 53.5 1.8 21 280-302 1080-1100(1706)
345 4aby_A DNA repair protein RECN 64.1 1.7 5.9E-05 45.2 0.6 19 280-301 59-77 (415)
346 2h92_A Cytidylate kinase; ross 63.9 2.5 8.7E-05 39.7 1.7 16 285-302 6-21 (219)
347 2b8t_A Thymidine kinase; deoxy 63.8 2.6 8.7E-05 41.6 1.8 20 281-302 11-30 (223)
348 1ojl_A Transcriptional regulat 63.7 2.7 9.1E-05 42.7 2.0 19 282-302 25-43 (304)
349 3bgw_A DNAB-like replicative h 63.4 2.7 9.1E-05 45.4 2.0 21 280-302 195-215 (444)
350 2iw3_A Elongation factor 3A; a 63.1 2.6 8.9E-05 50.3 2.0 21 280-302 459-479 (986)
351 1z2a_A RAS-related protein RAB 62.9 3.1 0.00011 36.3 2.0 18 285-302 6-23 (168)
352 1nrj_B SR-beta, signal recogni 62.4 2.8 9.4E-05 39.0 1.7 17 284-302 14-30 (218)
353 4a1f_A DNAB helicase, replicat 62.3 3 0.0001 43.7 2.1 21 280-302 44-64 (338)
354 2dyk_A GTP-binding protein; GT 62.3 3.2 0.00011 36.0 1.9 16 285-302 4-19 (161)
355 1q57_A DNA primase/helicase; d 62.3 2.5 8.5E-05 45.7 1.5 21 280-302 240-260 (503)
356 1ky3_A GTP-binding protein YPT 62.1 3.2 0.00011 36.7 1.9 19 284-302 8-26 (182)
357 2wjg_A FEOB, ferrous iron tran 62.1 4.7 0.00016 36.2 3.1 18 285-302 8-25 (188)
358 1ek0_A Protein (GTP-binding pr 62.0 3.3 0.00011 36.1 2.0 14 288-301 7-20 (170)
359 1u8z_A RAS-related protein RAL 62.0 3.3 0.00011 35.9 2.0 16 287-302 7-22 (168)
360 3ihw_A Centg3; RAS, centaurin, 62.0 4.4 0.00015 37.1 3.0 21 282-302 18-38 (184)
361 2ged_A SR-beta, signal recogni 61.9 3.2 0.00011 37.6 1.9 17 284-302 50-66 (193)
362 2vf7_A UVRA2, excinuclease ABC 61.9 2.8 9.6E-05 49.1 1.9 22 279-302 520-541 (842)
363 2fna_A Conserved hypothetical 61.6 3 0.0001 41.3 1.9 18 283-302 31-48 (357)
364 3q85_A GTP-binding protein REM 61.2 3.4 0.00012 36.2 2.0 15 288-302 6-20 (169)
365 3kl4_A SRP54, signal recogniti 61.1 3 0.0001 45.2 1.9 35 285-319 98-135 (433)
366 2fn4_A P23, RAS-related protei 61.1 4.5 0.00016 35.7 2.8 20 283-302 8-27 (181)
367 3pih_A Uvrabc system protein A 60.9 3 0.0001 49.3 1.9 20 280-301 608-627 (916)
368 2hxs_A RAB-26, RAS-related pro 60.8 5.1 0.00017 35.4 3.1 19 284-302 6-24 (178)
369 1kao_A RAP2A; GTP-binding prot 60.7 4.3 0.00015 35.1 2.5 15 287-301 6-20 (167)
370 1xx6_A Thymidine kinase; NESG, 60.6 3.6 0.00012 39.4 2.1 35 280-316 6-43 (191)
371 3nbx_X ATPase RAVA; AAA+ ATPas 60.4 3.3 0.00011 45.5 2.1 20 282-303 41-60 (500)
372 2lkc_A Translation initiation 60.1 4.6 0.00016 35.7 2.6 19 282-302 8-26 (178)
373 3g5u_A MCG1178, multidrug resi 60.0 3.5 0.00012 50.3 2.3 22 280-303 1057-1078(1284)
374 2nzj_A GTP-binding protein REM 60.0 3.7 0.00013 36.2 1.9 16 287-302 7-22 (175)
375 3sr0_A Adenylate kinase; phosp 60.0 3.4 0.00012 39.9 1.9 45 580-624 151-201 (206)
376 2o5v_A DNA replication and rep 59.8 3.3 0.00011 43.6 1.8 20 280-302 25-44 (359)
377 1r8s_A ADP-ribosylation factor 59.8 3.8 0.00013 35.8 2.0 15 286-302 4-18 (164)
378 3pxg_A Negative regulator of g 59.6 3.7 0.00013 44.3 2.2 17 284-302 203-219 (468)
379 1j8m_F SRP54, signal recogniti 59.6 3.6 0.00012 41.9 2.1 36 282-319 98-136 (297)
380 3q72_A GTP-binding protein RAD 59.5 3.6 0.00012 36.0 1.8 13 290-302 8-20 (166)
381 1g41_A Heat shock protein HSLU 59.3 3.2 0.00011 45.2 1.6 17 284-302 52-68 (444)
382 1wms_A RAB-9, RAB9, RAS-relate 59.3 4.1 0.00014 36.0 2.2 18 285-302 8-25 (177)
383 2erx_A GTP-binding protein DI- 59.2 4.7 0.00016 35.1 2.5 15 287-301 6-20 (172)
384 1g16_A RAS-related protein SEC 58.9 3.7 0.00013 35.8 1.8 16 287-302 6-21 (170)
385 1c1y_A RAS-related protein RAP 58.7 4.9 0.00017 34.9 2.5 16 287-302 6-21 (167)
386 3tw8_B RAS-related protein RAB 58.4 4.1 0.00014 36.0 2.0 19 284-302 9-27 (181)
387 1upt_A ARL1, ADP-ribosylation 58.4 4.1 0.00014 35.7 2.0 16 287-302 10-25 (171)
388 1r6b_X CLPA protein; AAA+, N-t 58.3 4.3 0.00015 46.1 2.6 18 284-303 490-507 (758)
389 2ffh_A Protein (FFH); SRP54, s 58.2 3.6 0.00012 44.5 1.8 37 281-319 97-136 (425)
390 1z08_A RAS-related protein RAB 58.1 4.7 0.00016 35.3 2.3 18 285-302 7-24 (170)
391 3qf7_A RAD50; ABC-ATPase, ATPa 57.6 3.8 0.00013 42.8 1.8 19 280-301 22-40 (365)
392 3bc1_A RAS-related protein RAB 57.6 4.3 0.00015 36.2 2.0 18 285-302 12-29 (195)
393 3pqc_A Probable GTP-binding pr 57.5 3.9 0.00013 36.7 1.7 17 284-302 25-41 (195)
394 1z0j_A RAB-22, RAS-related pro 57.5 4.3 0.00015 35.4 1.9 17 286-302 8-24 (170)
395 3t5g_A GTP-binding protein RHE 57.5 4.2 0.00014 36.3 1.9 19 284-302 6-24 (181)
396 2y8e_A RAB-protein 6, GH09086P 57.2 4.1 0.00014 35.9 1.8 18 285-302 15-32 (179)
397 1r2q_A RAS-related protein RAB 57.2 4.4 0.00015 35.2 2.0 17 286-302 8-24 (170)
398 1e69_A Chromosome segregation 56.9 4.4 0.00015 41.2 2.2 19 281-302 24-42 (322)
399 1m2o_B GTP-binding protein SAR 56.8 4.4 0.00015 37.2 1.9 17 284-302 25-41 (190)
400 1wb9_A DNA mismatch repair pro 56.6 4.4 0.00015 47.1 2.4 21 280-302 605-625 (800)
401 2a9k_A RAS-related protein RAL 56.6 4.6 0.00016 35.9 2.0 18 285-302 19-36 (187)
402 2wsm_A Hydrogenase expression/ 56.5 4.2 0.00014 37.9 1.8 17 286-302 32-48 (221)
403 2r8r_A Sensor protein; KDPD, P 56.5 4.6 0.00016 40.3 2.2 21 281-302 4-24 (228)
404 1qvr_A CLPB protein; coiled co 56.5 4.3 0.00015 47.1 2.2 18 284-303 590-607 (854)
405 1f2t_A RAD50 ABC-ATPase; DNA d 56.3 4.6 0.00016 36.7 1.9 16 284-301 25-40 (149)
406 3con_A GTPase NRAS; structural 56.2 4.6 0.00016 36.4 2.0 18 285-302 22-39 (190)
407 2hf9_A Probable hydrogenase ni 56.0 4.2 0.00014 38.1 1.7 31 288-318 42-74 (226)
408 1ypw_A Transitional endoplasmi 55.7 2.4 8.2E-05 49.1 -0.1 20 282-303 511-530 (806)
409 2efe_B Small GTP-binding prote 55.6 4.8 0.00016 35.7 2.0 18 285-302 13-30 (181)
410 2gks_A Bifunctional SAT/APS ki 55.5 4.1 0.00014 45.2 1.8 20 282-303 372-391 (546)
411 1tq4_A IIGP1, interferon-induc 55.5 4.5 0.00015 43.5 2.0 17 286-302 71-87 (413)
412 1c9k_A COBU, adenosylcobinamid 55.4 3.8 0.00013 39.3 1.3 16 285-302 2-17 (180)
413 2iw3_A Elongation factor 3A; a 55.2 3.3 0.00011 49.4 1.0 21 280-302 697-717 (986)
414 1mh1_A RAC1; GTP-binding, GTPa 55.1 5 0.00017 35.7 2.0 15 287-301 8-22 (186)
415 2qnr_A Septin-2, protein NEDD5 55.1 3.7 0.00013 41.7 1.2 15 288-302 22-36 (301)
416 2r2a_A Uncharacterized protein 55.0 4.4 0.00015 39.0 1.7 17 284-302 7-23 (199)
417 2g6b_A RAS-related protein RAB 54.9 5.1 0.00017 35.5 2.0 18 285-302 11-28 (180)
418 2oil_A CATX-8, RAS-related pro 54.8 5 0.00017 36.4 2.0 19 284-302 25-43 (193)
419 1moz_A ARL1, ADP-ribosylation 54.8 4.3 0.00015 36.2 1.5 16 287-302 21-36 (183)
420 2axn_A 6-phosphofructo-2-kinas 54.7 4.8 0.00016 44.3 2.1 18 285-302 36-53 (520)
421 2j37_W Signal recognition part 54.7 4.6 0.00016 44.6 2.0 36 284-319 101-139 (504)
422 2bme_A RAB4A, RAS-related prot 54.7 4.8 0.00016 36.0 1.8 18 285-302 11-28 (186)
423 2ygr_A Uvrabc system protein A 54.6 4.4 0.00015 48.4 1.9 22 280-303 666-687 (993)
424 4dsu_A GTPase KRAS, isoform 2B 54.4 5.1 0.00018 35.7 1.9 17 286-302 6-22 (189)
425 1z0f_A RAB14, member RAS oncog 54.3 5.2 0.00018 35.2 2.0 18 285-302 16-33 (179)
426 1z6t_A APAF-1, apoptotic prote 54.3 4.9 0.00017 43.6 2.1 18 283-302 148-165 (591)
427 3t1o_A Gliding protein MGLA; G 54.2 5.2 0.00018 35.8 2.0 18 285-302 15-32 (198)
428 3dm5_A SRP54, signal recogniti 54.1 5.1 0.00018 43.6 2.2 35 285-319 101-138 (443)
429 2xxa_A Signal recognition part 54.1 5.4 0.00018 43.0 2.4 34 286-319 102-139 (433)
430 1svi_A GTP-binding protein YSX 54.0 4.7 0.00016 36.4 1.7 17 284-302 25-41 (195)
431 1u0j_A DNA replication protein 54.0 5.4 0.00019 40.6 2.3 18 283-302 105-122 (267)
432 1z06_A RAS-related protein RAB 53.8 6.3 0.00022 35.6 2.5 20 283-302 19-38 (189)
433 3pxi_A Negative regulator of g 53.7 5.6 0.00019 45.3 2.6 18 284-303 523-540 (758)
434 3bwd_D RAC-like GTP-binding pr 53.7 5.4 0.00019 35.4 2.0 17 284-302 10-26 (182)
435 2cxx_A Probable GTP-binding pr 53.2 5.1 0.00017 35.8 1.7 16 285-302 4-19 (190)
436 1fzq_A ADP-ribosylation factor 53.1 5.2 0.00018 36.3 1.8 17 286-302 18-34 (181)
437 1bif_A 6-phosphofructo-2-kinas 52.9 5.2 0.00018 43.0 2.0 17 286-302 41-57 (469)
438 1f6b_A SAR1; gtpases, N-termin 52.9 4.7 0.00016 37.3 1.5 17 284-302 27-43 (198)
439 3k53_A Ferrous iron transport 52.9 5.2 0.00018 39.3 1.9 16 287-302 6-21 (271)
440 4bas_A ADP-ribosylation factor 52.8 6.8 0.00023 35.4 2.5 19 284-302 17-35 (199)
441 3cbq_A GTP-binding protein REM 52.7 6.7 0.00023 36.2 2.5 19 284-302 23-41 (195)
442 3tkl_A RAS-related protein RAB 52.7 5.7 0.00019 35.8 2.0 18 285-302 17-34 (196)
443 3pxi_A Negative regulator of g 52.5 5.5 0.00019 45.3 2.2 17 284-302 203-219 (758)
444 3clv_A RAB5 protein, putative; 52.2 5.8 0.0002 35.4 1.9 16 287-302 10-25 (208)
445 3c5c_A RAS-like protein 12; GD 52.2 5.8 0.0002 36.2 1.9 19 284-302 21-39 (187)
446 1yrb_A ATP(GTP)binding protein 52.0 5.5 0.00019 38.2 1.8 35 284-319 14-51 (262)
447 2fu5_C RAS-related protein RAB 52.0 5.5 0.00019 35.6 1.7 16 287-302 11-26 (183)
448 2iwr_A Centaurin gamma 1; ANK 51.9 5.2 0.00018 35.5 1.6 18 285-302 8-25 (178)
449 1ksh_A ARF-like protein 2; sma 51.9 6 0.0002 35.5 2.0 18 285-302 19-36 (186)
450 2a5j_A RAS-related protein RAB 51.8 6 0.0002 36.0 2.0 18 285-302 22-39 (191)
451 2gf9_A RAS-related protein RAB 51.7 6 0.00021 35.8 2.0 18 285-302 23-40 (189)
452 3gj0_A GTP-binding nuclear pro 51.6 8.5 0.00029 35.9 3.1 20 283-302 14-33 (221)
453 3dz8_A RAS-related protein RAB 51.6 5.7 0.00019 36.1 1.8 16 287-302 26-41 (191)
454 2bov_A RAla, RAS-related prote 51.6 8 0.00027 35.1 2.8 19 284-302 14-32 (206)
455 1m7b_A RND3/RHOE small GTP-bin 51.6 5.7 0.0002 35.9 1.8 19 284-302 7-25 (184)
456 3thx_B DNA mismatch repair pro 51.5 5.5 0.00019 47.1 2.1 20 280-301 671-690 (918)
457 3cmw_A Protein RECA, recombina 51.1 5.2 0.00018 50.4 1.8 21 280-302 381-401 (1706)
458 1zbd_A Rabphilin-3A; G protein 50.7 6.3 0.00022 36.0 2.0 17 286-302 10-26 (203)
459 1r6b_X CLPA protein; AAA+, N-t 50.6 6.3 0.00021 44.7 2.3 19 282-302 207-225 (758)
460 2fh5_B SR-beta, signal recogni 50.6 6.3 0.00022 36.4 2.0 17 284-302 9-25 (214)
461 2v3c_C SRP54, signal recogniti 50.5 4.2 0.00014 43.8 0.8 34 284-319 101-137 (432)
462 3cmu_A Protein RECA, recombina 50.5 5.2 0.00018 51.1 1.7 21 280-302 1425-1445(2050)
463 2r6f_A Excinuclease ABC subuni 50.3 4.2 0.00015 48.4 0.9 22 280-303 648-669 (972)
464 2h57_A ADP-ribosylation factor 50.1 6.2 0.00021 35.8 1.8 18 285-302 22-39 (190)
465 3b1v_A Ferrous iron uptake tra 49.9 6.3 0.00022 39.5 1.9 17 286-302 5-21 (272)
466 3cf2_A TER ATPase, transitiona 49.7 6.5 0.00022 45.9 2.3 24 276-303 507-530 (806)
467 1ewq_A DNA mismatch repair pro 49.6 6.3 0.00022 45.6 2.1 19 282-302 576-594 (765)
468 2fg5_A RAB-22B, RAS-related pr 49.3 6.4 0.00022 35.9 1.8 19 284-302 23-41 (192)
469 2o8b_B DNA mismatch repair pro 49.3 6.7 0.00023 46.9 2.4 20 281-302 788-807 (1022)
470 2atv_A RERG, RAS-like estrogen 49.2 6.9 0.00023 35.7 1.9 17 284-302 30-46 (196)
471 3lxx_A GTPase IMAP family memb 49.1 8.1 0.00028 36.9 2.5 20 283-302 28-47 (239)
472 2il1_A RAB12; G-protein, GDP, 48.9 8.5 0.00029 35.1 2.5 19 284-302 26-44 (192)
473 1zj6_A ADP-ribosylation factor 48.9 6.7 0.00023 35.4 1.8 17 284-302 18-34 (187)
474 3llu_A RAS-related GTP-binding 48.6 6.7 0.00023 35.9 1.8 17 286-302 22-38 (196)
475 3reg_A RHO-like small GTPase; 48.6 7.2 0.00025 35.4 2.0 18 285-302 24-41 (194)
476 3l0i_B RAS-related protein RAB 48.6 6.7 0.00023 35.9 1.8 19 284-302 33-51 (199)
477 1x3s_A RAS-related protein RAB 48.5 7.3 0.00025 35.0 2.0 18 285-302 16-33 (195)
478 3l0o_A Transcription terminati 48.5 6.6 0.00022 42.7 1.9 20 281-302 174-193 (427)
479 2o52_A RAS-related protein RAB 48.3 6.8 0.00023 36.1 1.8 18 285-302 26-43 (200)
480 2h17_A ADP-ribosylation factor 48.1 6.3 0.00021 35.5 1.5 19 284-302 21-39 (181)
481 3qks_A DNA double-strand break 48.0 7.2 0.00025 37.1 1.9 17 284-302 25-41 (203)
482 2qag_C Septin-7; cell cycle, c 48.0 7.4 0.00025 41.8 2.2 15 288-302 35-49 (418)
483 2q3h_A RAS homolog gene family 47.9 7.4 0.00025 35.4 2.0 17 286-302 22-38 (201)
484 1vg8_A RAS-related protein RAB 47.9 7.4 0.00025 35.5 1.9 19 284-302 8-26 (207)
485 2ew1_A RAS-related protein RAB 47.8 7 0.00024 36.5 1.8 19 284-302 26-44 (201)
486 1zd9_A ADP-ribosylation factor 47.8 7.5 0.00026 35.3 2.0 18 285-302 23-40 (188)
487 2f7s_A C25KG, RAS-related prot 47.8 7.4 0.00025 36.0 2.0 18 285-302 26-43 (217)
488 2p5s_A RAS and EF-hand domain 47.8 7.5 0.00026 35.6 2.0 18 285-302 29-46 (199)
489 3cph_A RAS-related protein SEC 47.6 7.6 0.00026 35.6 2.0 17 286-302 22-38 (213)
490 2r9v_A ATP synthase subunit al 47.3 5.8 0.0002 44.1 1.3 20 281-302 174-193 (515)
491 3fdi_A Uncharacterized protein 47.3 5.7 0.0002 37.9 1.1 17 286-302 8-24 (201)
492 3t5d_A Septin-7; GTP-binding p 47.2 8.3 0.00028 38.0 2.3 22 281-302 5-26 (274)
493 3oes_A GTPase rhebl1; small GT 47.1 8.8 0.0003 35.2 2.3 20 283-302 23-42 (201)
494 4dhe_A Probable GTP-binding pr 46.9 5.4 0.00018 37.0 0.8 17 284-302 31-47 (223)
495 2fv8_A H6, RHO-related GTP-bin 46.7 7.4 0.00025 36.0 1.8 16 285-302 28-43 (207)
496 3szr_A Interferon-induced GTP- 46.7 5.5 0.00019 44.6 1.0 16 287-302 48-63 (608)
497 2qu8_A Putative nucleolar GTP- 46.6 8.5 0.00029 36.3 2.2 17 286-302 31-47 (228)
498 3thx_A DNA mismatch repair pro 46.4 7.7 0.00026 46.0 2.2 21 280-302 660-680 (934)
499 2b6h_A ADP-ribosylation factor 46.3 7.7 0.00026 35.6 1.8 16 287-302 32-47 (192)
500 2bcg_Y Protein YP2, GTP-bindin 46.2 7.7 0.00026 35.6 1.8 18 285-302 9-26 (206)
No 1
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=100.00 E-value=9.9e-225 Score=1811.11 Aligned_cols=609 Identities=67% Similarity=1.205 Sum_probs=592.8
Q ss_pred ceeeecccccccCHHHHHHHHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCC
Q psy13077 18 KFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESK 97 (630)
Q Consensus 18 ~~~~~~g~~~~~~~~~~~~v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~ 97 (630)
.+||++||+++||++|++||+|+|+||+|++|||||||+||+++|+++++++|++++|.|++|||+|||+|.||||+|++
T Consensus 14 ~~~v~~g~~~~l~~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~ve~G~~~~L~k~pn~~l~~sdP~DvARve~r 93 (624)
T 3moe_A 14 SAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESK 93 (624)
T ss_dssp GGGEEESCTTTSCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECCCTTCCSCCGGG
T ss_pred cceeecCChHhcCHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCCEEEeCChhhccccccc
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCcCCCCCccCCCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHhhh
Q psy13077 98 TFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSM 177 (630)
Q Consensus 98 tfIv~~~~~d~gp~~~~gi~~~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l~m 177 (630)
||||+++++|+||++++| .+++||||+|++|+++|.++|+|||+||||||+||||||+|||++++||||||||||||||
T Consensus 94 TfI~t~~~~da~p~~~~g-~~~~nnwm~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~GSp~s~~GVeiTDS~YVv~sm 172 (624)
T 3moe_A 94 TVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASM 172 (624)
T ss_dssp EEEECSSHHHHSCCCSSS-CCSSCCEECHHHHHHHHHTTSTTTTTTSEEEEEEEEESCSSCTTCEEEEEEESCHHHHHHH
T ss_pred eEEecCchhhcCCcccCC-cCcccccCCHHHHHHHHHhhCcccccCCeEEEEeeecCCCCCCccceeEEccCcHHHHHhH
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCChHHhhhcCCCCCceEEEEecCCCCCCCCcCC-CCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehh
Q psy13077 178 RIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFP-EWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALR 256 (630)
Q Consensus 178 ~im~R~~~~~l~~~~~~~~Fv~~~hs~g~p~~~~~~~~-~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alr 256 (630)
|||||++++||+.++++ +|||||||+|.|++++++++ +||||+++++|+|+|++|+|||+||||||||||||||||||
T Consensus 173 rIMtR~g~~vld~lg~~-~Fv~clHSvG~pl~~~~~~v~~Wpcnp~k~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALR 251 (624)
T 3moe_A 173 RIMTRMGTSVLEALGDG-EFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALR 251 (624)
T ss_dssp HHHSEESHHHHHHHTTC-CCEEEEEECSCCSSCSSCCBTTBCCCGGGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTH
T ss_pred HHHhhCCHHHHHhhcCC-CeeeeecccCCCCCCCCccCCCCCCCCCceEEEEecccCeEEEecCCcCcchhhhHHHHHHH
Confidence 99999999999999864 99999999999999998855 89999998999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccC
Q psy13077 257 IGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPE 336 (630)
Q Consensus 257 ias~~a~~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE 336 (630)
|||++|++||||||||+|+||++|+|+++||+|||||||||||||||.|++|||||+|||||||||||++||+|||||||
T Consensus 252 iAS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~~Gwkve~vGDDIAwm~~~~dG~l~AiNPE 331 (624)
T 3moe_A 252 IASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPE 331 (624)
T ss_dssp HHHHHHHHHTCEEESCEEEEEECTTSCEEEEEEECCTTSSHHHHHTCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCC
T ss_pred HHHHHhhhcccHHHhHHHheecCCCCcEEEEEEEcccccccccHhhcCCCCCCceeEEecccEEEEEECCCccEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEeccCCCCCCcHHHHhhccCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeec
Q psy13077 337 NGFFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTP 416 (630)
Q Consensus 337 ~G~fgk~~g~s~~~~P~i~~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P 416 (630)
+|||||+||||.++||++|++|++|+|||||++|+||+|||||+++++|.+.+++||+|++|+++++.||||||||||+|
T Consensus 332 ~GfFGvapGt~~~tnp~am~~l~~n~IFTNVa~t~dG~v~WeG~~~~~p~~~~~~dw~G~~w~~~~~~p~aHPNsRft~p 411 (624)
T 3moe_A 332 NGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTP 411 (624)
T ss_dssp SEEEEECTTCSTTTCHHHHHHTTBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEE
T ss_pred CCeeeecCCCCCccCHHHHHhhcCCceEeeeEECCCCCeecCCCCCCCCCCcceeeCCCCCCCCCCCCcCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCCcccceEEEeccCCCCCCceEeecCccceeeccccccchhhhhhcccCceeccCCccCCCCCCCC
Q psy13077 417 ASQCPTIDPNWESHEGVPISAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYN 496 (630)
Q Consensus 417 ~~~~pn~~~~~e~p~GvPi~aIiFg~rd~~glPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a~~PF~~y~ 496 (630)
++|||+++|+||+|+|||||||||||||++|+|||+|+++||||||+||+|+||+|||++|++|+++||||||+|||+||
T Consensus 412 ~~qcp~~~p~we~p~GVpIsaiiFGGRr~~~vPlV~ea~~W~hGV~~gA~m~SE~TAAa~~~~g~vr~DPmAMlPF~gYn 491 (624)
T 3moe_A 412 ASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAGAEHKGKVIMHDPFAMRPFFGYN 491 (624)
T ss_dssp GGGCTTBCTTTTCTTCEEEEEEEEECCCSSSCCSEEECSSHHHHHHHHHTCEEECC------CCCEEECGGGCTTTCSSC
T ss_pred HhhCCCCCccccCCCCceEEEEEEcccCCCCCCcEEEecCcchhhhhhhhhhhhHhHHhhcCCCcEEECccccCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCcccccCCCCCcCCCC
Q psy13077 497 FGDYLKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEALITTN 576 (630)
Q Consensus 497 ~g~Y~~~wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp~G~iP~~~~l~~~G 576 (630)
+|+|++|||+|+++...+.||||+|||||||.+|+|||||||+|+|||+||++|++ |++.+++||||+||++++||++|
T Consensus 492 ~gdY~~HWL~~g~~~~~k~PkIF~VNwFrkd~~GkFLWPGfgeN~RVL~Wi~~R~~-G~~~a~eTpIG~iP~~~~ldl~g 570 (624)
T 3moe_A 492 FGKYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIE-GEDSAKLTPIGYVPKEDALNLKG 570 (624)
T ss_dssp HHHHHHHHHHGGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHT-TCSCEEEETTEEEECTTTSCCTT
T ss_pred HHHHHHHHHHhcccCCCCCCcEEEEeeeEECCCCCCcCCCCcchhHHHHHHHHHhc-CccceeecCCeecCCccccCccc
Confidence 99999999999999767999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCchhhhHhhhcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhC
Q psy13077 577 LASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQRIKQ 630 (630)
Q Consensus 577 l~~~~~~~~~~~~d~~~w~~e~~~l~~~f~~~~~~~lP~ei~~~l~~~~~rl~~ 630 (630)
|+ +++++++|++|+++|++|+++++++|++|+|++||+||.++|++|++||++
T Consensus 571 L~-~~d~~~l~~v~~~~W~~E~~~i~~~f~~~~g~~lP~el~~el~~l~~Rl~~ 623 (624)
T 3moe_A 571 LG-DVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQRISQ 623 (624)
T ss_dssp CT-TSCHHHHHCCCHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHT
T ss_pred CC-HHHHHHHcCcCHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhh
Confidence 96 799999999999999999999999998899999999999999999999975
No 2
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=100.00 E-value=2.1e-216 Score=1744.96 Aligned_cols=604 Identities=60% Similarity=1.154 Sum_probs=576.7
Q ss_pred cccccccCHHHHHHHHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEc
Q psy13077 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICT 102 (630)
Q Consensus 23 ~g~~~~~~~~~~~~v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~ 102 (630)
.-|++.||++|++||+|+|+||+|++|||||||+||+++|+++++++|++++|.+++||||+||+|.||||+|++||||+
T Consensus 2 ~~~~~~l~~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~v~~G~~~~L~k~~n~~l~~sdp~DvARve~rTfI~t 81 (608)
T 2faf_A 2 STSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDPRDVARVESKTVLVT 81 (608)
T ss_dssp BSCCTTSCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECTTSBSCEEECCCTTCSSCCGGGEEEEC
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhCCCeeecCCCCCceeccCChhhcceeccceEEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCcCC-CCCccCCCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHhhhhhcc
Q psy13077 103 QEKAETVPDT-KPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMT 181 (630)
Q Consensus 103 ~~~~d~gp~~-~~gi~~~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l~m~im~ 181 (630)
++++|+||++ .+|+.++++|||+|++|+++|.++|+|||+||||||+||||||+|||++++||||||||||||||||||
T Consensus 82 ~~~~dagp~n~~~g~~~~~~nw~~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~gsp~s~~GVeiTDS~YVv~smriMt 161 (608)
T 2faf_A 82 PEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGCMAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMT 161 (608)
T ss_dssp SSGGGTSCCCCTTCCCCCSCCEECHHHHHHHHHHHSTTTTTTSEEEEEEEEESCTTCTTCEEEEEEESCHHHHHHHHHHS
T ss_pred CchhhcCCCCccccccccccccCCHHHHHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH
Confidence 9999999997 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHhhhcCCCCCceEEEEecCCCC-CCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhh
Q psy13077 182 RIGTPVLNLLDADQPFVKALHSVGTPV-SGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGST 260 (630)
Q Consensus 182 R~~~~~l~~~~~~~~Fv~~~hs~g~p~-~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~ 260 (630)
|++++||+.+++ +|||||||+|.|+ ..++.+++||||+++++|+|+|++|+|||+|||||||||||||||||||||+
T Consensus 162 R~g~~v~~~lg~--~Fv~~vHSvG~pl~~~~~~~~~WPcn~~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~ 239 (608)
T 2faf_A 162 RVGPAVLQRLDD--DFVRCLHSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASR 239 (608)
T ss_dssp EESHHHHTTCCS--CCEEEEEECSCCSSCSSCCSTTCCCCGGGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHH
T ss_pred hcCHHHHHHhhC--ccceeecccCCcCCcccccCCCCccCCCccEEEEECCCCeEEEecCCcCcchhhhhHHHHHHHHHH
Confidence 999999999987 8999999999999 4566688999999989999999999999999999999999999999999999
Q ss_pred hhhccCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccCCCee
Q psy13077 261 IAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFF 340 (630)
Q Consensus 261 ~a~~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE~G~f 340 (630)
+|++||||||||+|+||++|+|+++||+|||||||||||||||.|++||||++|||||||||||+.||+|||+|||+|||
T Consensus 240 ~ar~EGWLAEHMlIlgvt~p~g~~~yiaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dG~l~AiNPE~GfF 319 (608)
T 2faf_A 240 MAQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMKFDDEGRLRAINPERGFF 319 (608)
T ss_dssp HHHHHTCEEESCEEEEEECTTSCEEEEEEECSSCTTSCCGGGCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEE
T ss_pred HhhhcChHHHHHHHheecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceeeeEECCCCcEEEecCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCcHHHHhhccCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCC
Q psy13077 341 GVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQC 420 (630)
Q Consensus 341 gk~~g~s~~~~P~i~~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~ 420 (630)
||+||||.++||+||+++++|+|||||++|+||+|||||+++++++..+++||+|+.|+++++.||||||||||+|++||
T Consensus 320 GvapGt~~~tnP~am~tl~~n~IFTNVa~t~dG~v~WeG~~~~~~p~~~~~dw~G~~w~~~~g~paaHpNsRft~p~~qc 399 (608)
T 2faf_A 320 GVAPGTSSRTNPNAMATIARNTIFTNVGLRSDGGVYWDGLDEPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQC 399 (608)
T ss_dssp EECTTCCTTTCHHHHHHTSBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTCSSCSSCTTCEEEEEGGGC
T ss_pred EecCCCCCCcCHHHHHHhccCceeeeeEEcCCCceecCCCCCCCCCCccccccCCCccCCCCCCcCcCCccceEeEHhhC
Confidence 99999999999999999999999999999999999999999876344589999999999999999999999999999999
Q ss_pred CCCCCCCcCCCCcccceEEEeccCCCCCCceEeecCccceeeccccccchhhhhhcccCceeccCCccCCCCCCCChHHH
Q psy13077 421 PTIDPNWESHEGVPISAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDY 500 (630)
Q Consensus 421 pn~~~~~e~p~GvPi~aIiFg~rd~~glPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~~~~dP~a~~PF~~y~~g~Y 500 (630)
|+++|+||+|+|||||||||||||++|+|||+|+++||||||+||||+||+|||++|++|+++||||||+|||+||+|+|
T Consensus 400 p~id~~we~p~GVpIsaiiFggRR~~~vPlV~ea~~W~hGV~~Gasm~Se~Taaa~g~~~~vr~DPfAmlpF~gyn~gdY 479 (608)
T 2faf_A 400 PIMDPRWDDPEGVPIDAIIFGGRRPRGVPLVVEAFGWRHGVFMGSAMRSEATAAAEHKGGRLMHDPFAMRPFFGYNAGRY 479 (608)
T ss_dssp TTBCTTTTCTTCEEEEEEEEEECCSSSSCSEEECSSHHHHHHHHHTCBC------------CCBCGGGCGGGCSSCHHHH
T ss_pred CccCccccCCCCceEEEEEEcccCCCCCCcEEEccCchhhhhhhchhccccchhhcCCCCcEeeCcccccccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCcccccCCCCCcCCCCCCch
Q psy13077 501 LKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEALITTNLASD 580 (630)
Q Consensus 501 ~~~wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp~G~iP~~~~l~~~Gl~~~ 580 (630)
++|||+||++...+.||||+|||||+|.+|+|||||||+|+|||+||++|++ |++++++||||+||++++||+.|| ++
T Consensus 480 ~~HWL~~g~~~~~k~PkIF~VNwFrk~~~GkflwPGfgeN~RvL~Wi~~R~~-G~~~a~eTpiG~iP~~~~L~l~gl-~~ 557 (608)
T 2faf_A 480 LEHWLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWIFGRIQ-GRDTARPTPIGWVPKEGDLDLGGL-PG 557 (608)
T ss_dssp HHHHHHHTTSTTCBCCEEEEEESCCBCTTSSBSSCCGGGHHHHHHHHHHHHT-TCSCEEEETTEEEECTTSSCCTTC-TT
T ss_pred HHHHhhhccccCCCCCcEEEEeeeeECCCCCCCCCCCccchhHHHHHHHHhc-CccCceeCCCcccCCccccCCCCc-CH
Confidence 9999999999767899999999999999999999999999999999999999 999999999999999999999999 67
Q ss_pred hhhHhhhcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhC
Q psy13077 581 VDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQRIKQ 630 (630)
Q Consensus 581 ~~~~~~~~~d~~~w~~e~~~l~~~f~~~~~~~lP~ei~~~l~~~~~rl~~ 630 (630)
+++.++|++|+++|++|+++++++|++++|++||+||.++|++|++||++
T Consensus 558 ~~~~~l~~v~~~~w~~e~~~~~~~f~~~~g~~lP~el~~~l~~l~~rl~~ 607 (608)
T 2faf_A 558 VDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRDVMAELEGLEERVRK 607 (608)
T ss_dssp CCHHHHSCCCHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999998648999999999999999999964
No 3
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=100.00 E-value=5e-213 Score=1721.78 Aligned_cols=588 Identities=49% Similarity=0.922 Sum_probs=568.0
Q ss_pred ccCHHHHHHHHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccc--cCCCCcEEEeeCCCcccccCCCEEEEcCCC
Q psy13077 28 AISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICTQEK 105 (630)
Q Consensus 28 ~~~~~~~~~v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L--~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~ 105 (630)
..|++|++||+|+|+||+|++|||||||+||+++|+++|+++|++++| .+++|||++||+|.||||+|++||||++++
T Consensus 15 ~~n~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~v~~G~~~~L~~~k~~n~~l~~sdp~DvARve~rTfI~t~~~ 94 (610)
T 2zci_A 15 TKNKELLNWIADAVELFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRPNSYLARSNPSDVARVESRTFICSEKE 94 (610)
T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECCTTTSTTCEEECCCGGGSSCCGGGEEECCSST
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhCCCeeecCCCCCCceeecCCChhhcceeccceEEecCch
Confidence 468899999999999999999999999999999999999999999999 689999999999999999999999999999
Q ss_pred cccCcCCCCCccCCCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHhhhhhcccCCh
Q psy13077 106 AETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGT 185 (630)
Q Consensus 106 ~d~gp~~~~gi~~~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l~m~im~R~~~ 185 (630)
+|+||+ ||||+|++|+++|.++|+|||+||||||+||||||+|||++++|||||||||||||||||||+++
T Consensus 95 ~dagpt---------nnw~~p~e~~~~l~~~f~G~M~GRTMYViPfsMGP~gsp~s~~GVeiTDS~YVv~smrIMtR~g~ 165 (610)
T 2zci_A 95 EDAGPT---------NNWAPPQAMKDEMSKHYAGSMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMGI 165 (610)
T ss_dssp TTTCTT---------SCCCCHHHHHHHHHHHHTTTTTTSEEEEEEEEESCTTCSSCEEEEEEESCHHHHHHHHHHSEESH
T ss_pred hhcCCC---------cCccCHHHHHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHHhcCH
Confidence 999999 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhcc
Q psy13077 186 PVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKRE 265 (630)
Q Consensus 186 ~~l~~~~~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~e 265 (630)
+||+.++++++|||||||+|.|+..++.+++||||++ ++|+|+|++|+|||+|||||||||||||||||||||++|++|
T Consensus 166 ~v~~~lg~~~~Fv~~vHSvG~pl~~~~~dv~wPc~~~-~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~E 244 (610)
T 2zci_A 166 EALDKIGANGSFVRCLHSVGAPLEPGQEDVAWPCNDT-KYITQFPETKEIWSYGSGYGGNAILAKKCYALRIASVMAREE 244 (610)
T ss_dssp HHHHHHTTTCCCEEEEEECSCCCCSSCCCCSSCCCSS-CEEEEETTTTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHH
T ss_pred HHHHHhCCCCCeeeeecccCCcCCCCCcCCCCCCCCc-eEEEEecCcCeEEEecCCcCcchhhhhHHHHHHHHHHHhhhc
Confidence 9999998877999999999999998888999999998 799999999999999999999999999999999999999999
Q ss_pred CcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEeccCCCeeEeccC
Q psy13077 266 GWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGVAPG 345 (630)
Q Consensus 266 GwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE~G~fgk~~g 345 (630)
|||||||+|+||++|+|+++||+|||||||||||||||.|++||||+++||||||||||+.|| |||+|||+|||||+||
T Consensus 245 GWLAEHMlIlgvt~P~g~~~yvaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dG-l~AiNPE~GfFGvapG 323 (610)
T 2zci_A 245 GWMAEHMLILKLINPEGKAYHIAAAFPSACGKTNLAMITPTIPGWTAQVVGDDIAWLKLREDG-LYAVNPENGFFGVAPG 323 (610)
T ss_dssp TCEEECCEEEEEECSSSCEEEEEEECSSSHHHHHHHTCCCSSTTCEEEEEESSCEEEEECSSS-EEEECCCSEEEEECTT
T ss_pred ChHHHHHHHheecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceeeEeeCCCc-eeEecCCCceeEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCcHHHHhhc-cCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCC
Q psy13077 346 TSNKTNPIAMKTV-FKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTID 424 (630)
Q Consensus 346 ~s~~~~P~i~~ai-~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~ 424 (630)
||.++||+||+++ ++|+|||||++|+||+|||||+++++|. +++||+|+.||++++.||||||||||+|++|||+++
T Consensus 324 t~~~tnP~am~~~~~~n~IFtNVa~t~dG~v~WeG~~~~~p~--~~~dw~G~~w~~~~~~paaHpNsRft~p~~qcp~i~ 401 (610)
T 2zci_A 324 TNYASNPIAMKTMEPGNTLFTNVALTDDGDIWWEGMDGDAPA--HLIDWMGNDWTPESDENAAHPNSRYCVAIDQSPAAA 401 (610)
T ss_dssp CCTTTCHHHHHHHTTCCCEEESCEEETTSCEECTTCSSCCCS--CEECTTSCEECTTCSSCSSCTTCEEEEEGGGCTTBC
T ss_pred CCCCcCHHHHHHhccCCceEeeeEEcCCCcccCCCCCCCCCC--cccccCCCccCCCCCCcCcCCccceEeEHhhCCccC
Confidence 9999999999999 8999999999999999999999988775 789999999999999999999999999999999999
Q ss_pred CCCcCCCCcccceEEEeccCCCCCCceEeecCccceeeccccccchhhhh-hcccCceeccCCccCCCCCCCChHHHHHH
Q psy13077 425 PNWESHEGVPISAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAA-AEHKGKVIMHDPFAMRPFFGYNFGDYLKH 503 (630)
Q Consensus 425 ~~~e~p~GvPi~aIiFg~rd~~glPpV~e~~~wq~gv~lGas~~Se~TAa-~~g~~g~~~~dP~a~~PF~~y~~g~Y~~~ 503 (630)
|+||+|+|||||||||||||++|+|||+|+++||||||+||||+||+||| ++|++|++++|||||+|||+||+|+|++|
T Consensus 402 ~~we~p~GVpIsaiiFggRR~~~vPlV~ea~~W~hGV~~Gasm~Se~taa~a~g~~~~vr~DPfAmlpF~gyn~gdY~~H 481 (610)
T 2zci_A 402 PEFNDWEGVKIDAILFGGRRADTVPLVTQTYDWEHGTMVGALLASGQTAASAEAKVGTLRHDPMAMLPFIGYNAGEYLQN 481 (610)
T ss_dssp GGGGCTTCEECSEEEEECCCSSSSCSEEECSSHHHHHHHHHTCBCCC--------CCCCCBCGGGCTTTCCSCHHHHHHH
T ss_pred ccccCCCCceEEEEEEcccCCCCCCcEEEccCchhhhhhhchhcccccchhhcCCCceEeeCcccccccCcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHHHHHHHHhHhcCccceecCcccccCCCCCcCCCCCC-chhh
Q psy13077 504 WLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEALITTNLA-SDVD 582 (630)
Q Consensus 504 wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~RvL~wi~~r~~~G~~~~~~tp~G~iP~~~~l~~~Gl~-~~~~ 582 (630)
||+||++...+.||||+|||||+|.+|+|||||||+|+|||+||++|++ |++++++||||+||++++||+.||+ ++++
T Consensus 482 WL~~g~~~~~k~PkIF~VNwFrkd~~GkflwPGfgeN~RvL~Wi~~R~~-G~~~a~eTpiG~iP~~~~L~l~gld~~~~~ 560 (610)
T 2zci_A 482 WIDMGNKGGDKMPSIFLVNWFRRGEDGRFLWPGFGDNSRVLKWVIDRIE-GHVGADETVVGHTAKAEDLDLDGLDTPIED 560 (610)
T ss_dssp HHHHHHHHGGGSCEEEEECTTCBCTTSCBSSCCGGGHHHHHHHHHHHHH-TCCCCEECSSSEECCGGGSCCSCCCSCCTT
T ss_pred HhhhcccCCCCCCcEEEEeeeeECCCCCCCCCCCccchhhHHHHHHHhc-CccCceeCCCcccCCccccCCcCCCCCHHH
Confidence 9999999767999999999999999999999999999999999999999 9999999999999999999999997 7789
Q ss_pred hHhhhcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHhhC
Q psy13077 583 LEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQRIKQ 630 (630)
Q Consensus 583 ~~~~~~~d~~~w~~e~~~l~~~f~~~~~~~lP~ei~~~l~~~~~rl~~ 630 (630)
+.++|++|+++|++|+++++++|+ ++|++||+||.++|++|++||++
T Consensus 561 ~~~l~~v~~~~w~~e~~~~~~~f~-~~g~~lP~el~~~l~~l~~rl~~ 607 (610)
T 2zci_A 561 VKEALTAPAEQWANDVEDNAEYLT-FLGPRVPAEVHSQFDALKARISA 607 (610)
T ss_dssp HHHHHCCCHHHHHHTHHHHHHHHH-HTCTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHcCcCHHHHHHHHHHHHHHHH-HhccCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 46999999999999999999963
No 4
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=100.00 E-value=8.7e-115 Score=954.72 Aligned_cols=492 Identities=19% Similarity=0.257 Sum_probs=418.4
Q ss_pred HHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccC
Q psy13077 39 NCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG 118 (630)
Q Consensus 39 ~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~ 118 (630)
+.++||+|++||||+|+++ |+++|+++|++.++ .+|+++++|++ +|||||+|||||+++.++ + .+||
T Consensus 5 ~~~~l~~~~~v~~n~~~~~----l~e~a~~~g~g~~~--~~g~~~~~tg~-~tgRsp~~~fIv~~~~~~--~----~~~w 71 (529)
T 1j3b_A 5 EALGIHPKKRVFWNTVSPV----LVEHTLLRGEGLLA--HHGPLVVDTTP-YTGRSPKDKFVVREPEVE--G----EIWW 71 (529)
T ss_dssp GGGTCCCSSCEEESCCHHH----HHHHHHHTTSCEEC--TTSCEEECCTT-CCSCCGGGEEEECCTTTT--T----TSCB
T ss_pred hhccCCCCCeEEECCChHH----HHHHHHHcCCCEEC--CCCCEEeCCCC-cccCCCCceEEeCCCCcC--C----cccc
Confidence 3678999999999999988 88889999998865 58999999999 699999999999988864 2 3455
Q ss_pred -CCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceEEccchHHHhhhhhcc-cCC----hHHhhhcC
Q psy13077 119 -TLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMT-RIG----TPVLNLLD 192 (630)
Q Consensus 119 -~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~iTdsayv~l~m~im~-R~~----~~~l~~~~ 192 (630)
+.|.+++++.|+ +|++++.+||+||+|||+|++||. +++....+++|||+|||+|+|++|+ |+. .++++.+.
T Consensus 72 ~~~n~~~~~e~f~-~l~~~~~~~m~gr~lyV~~~~~G~-~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~~ 149 (529)
T 1j3b_A 72 GEVNQPFAPEAFE-ALYQRVVQYLSERDLYVQDLYAGA-DRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFV 149 (529)
T ss_dssp TTTBEEECHHHHH-HHHHHHHHHHHTSCEEEEEEEECS-STTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCC
T ss_pred ccccCcCCHHHHH-HHHHHHHHHhcCCcEEEEEEeeeC-CcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccCC
Confidence 557778888887 699999999999999999999994 5555555666999999999999999 976 67777776
Q ss_pred CCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccc
Q psy13077 193 ADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272 (630)
Q Consensus 193 ~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm 272 (630)
+ +|+ +++.+....++.. + +||++ ++|+||+++++|||+||+|+|| +||+ +|||||++++++|||+|||
T Consensus 150 p--d~~-i~~~p~f~~~~~~-~---G~~s~-~~i~~~~~~~~i~i~Gt~Y~Ge---~KK~-~l~i~~~~~~~~G~L~~H~ 217 (529)
T 1j3b_A 150 P--GFT-VVHAPYFQAVPER-D---GTRSE-VFVGISFQRRLVLIVGTKYAGE---IKKS-IFTVMNYLMPKRGVFPMHA 217 (529)
T ss_dssp C--SEE-EEEETTCCCCHHH-H---CCSSS-CEEEEETTTTEEEEESCCCTHH---HHHH-HHHHHHHHGGGGTCEEEEC
T ss_pred C--CEE-EEeCCCcccCccc-C---CCCCc-eEEEEECccCEEEEeCCccCcc---hHHH-HHHHHHHHHHHCCeEeccc
Confidence 6 776 7766443222111 2 68898 7999999999999999999999 7777 5999999999999999999
Q ss_pred hhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCCc
Q psy13077 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKTN 351 (630)
Q Consensus 273 ~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~ 351 (630)
++ +++++|++++|| ||||||||||||+ | . ++|||||+ +| ++||+ ||||+|||||++|||+++|
T Consensus 218 sa--~~~~~g~~~~ff--GlSGtGKTtLs~~-p---~--r~lIgDD~~~w---~~~Gv---~n~E~G~y~k~~~ls~~~e 281 (529)
T 1j3b_A 218 SA--NVGKEGDVAVFF--GLSGTGKTTLSTD-P---E--RPLIGDDEHGW---SEDGV---FNFEGGCYAKVIRLSPEHE 281 (529)
T ss_dssp EE--EECTTCCEEEEE--ECTTSCHHHHTCB-T---T--BCEEESSEEEE---CSSCE---EESCSEEEEECTTCCTTTC
T ss_pred ee--eeCCCCcEEEEE--ccccCChhhHhhc-c---C--cceEECchhhh---ccCce---ecccCceEEEecCCCCcch
Confidence 95 468999999999 7999999999994 5 3 69999998 99 58996 8999999999999999999
Q ss_pred HHHHhhc-cCCceeEcceEcCCC-ceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcC
Q psy13077 352 PIAMKTV-FKNTIFTNVASTSDG-GVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWES 429 (630)
Q Consensus 352 P~i~~ai-~~~tIf~NV~~~~dg-~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~ 429 (630)
|+||++| ++|+|||||++|+|| .|||+|++. |||+|||||++||||++++ +
T Consensus 282 P~i~~ai~~~~~ileNV~~d~dg~~v~~~~~~~-------------------------t~N~R~~~P~~~~pn~~~~--~ 334 (529)
T 1j3b_A 282 PLIYKASNQFEAILENVVVNPESRRVQWDDDSK-------------------------TENTRSSYPIAHLENVVES--G 334 (529)
T ss_dssp HHHHHHHSSTTCEEESCEECTTTCCEETTCCSS-------------------------CSCCEEEEEGGGCSSBCTT--S
T ss_pred HHHHHHhCcCCceeEEeEECCCCCcccCCCCCC-------------------------CCCccEEEEHHHCCCCCCC--C
Confidence 9999999 899999999999987 789998532 5899999999999999986 8
Q ss_pred CCCcccceEEEeccCCCC-CCceEeecCccceeeccccccchhhhhhccc-CceeccCC----ccCCCCCCCChHHHHHH
Q psy13077 430 HEGVPISAIIFGGRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHK-GKVIMHDP----FAMRPFFGYNFGDYLKH 503 (630)
Q Consensus 430 p~GvPi~aIiFg~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~-~g~~~~dP----~a~~PF~~y~~g~Y~~~ 503 (630)
++||| ++|||||||++| +|||++++..|++||| .||+|||++|+ .|+++++| |+|+|||+||+++|++|
T Consensus 335 ~~g~P-~~Iifl~~da~gvlPpV~~l~~~qa~~~f----~sG~Tak~agtE~Gv~ep~ptFs~~f~~PF~~~~~~~ya~~ 409 (529)
T 1j3b_A 335 VAGHP-RAIFFLSADAYGVLPPIARLSPEEAMYYF----LSGYTARVAGTERGVTEPRATFSACFGAPFLPMHPGVYARM 409 (529)
T ss_dssp EECCE-EEEEEEECCTTSCSCSEEEECHHHHHHHH----HHCEEEEC---------CEEEECGGGCGGGCSSCHHHHHHH
T ss_pred cCCCC-CEEEEEEccCCCCCCCeecCCHHHHHHHH----HccccccccccccCccccCCcccccccCCccCCCHHHHHHH
Confidence 99999 999999999997 8999988655556656 89999999999 88887777 89999999999999999
Q ss_pred HHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCccc---eecCc-ccc-cCCCCCcCC
Q psy13077 504 WLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKEI---AEASP-IGY-IPKPEALIT 574 (630)
Q Consensus 504 wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~~---~~~tp-~G~-iP~~~~l~~ 574 (630)
|++++.++.|+||+|| |||.|+ +||+++|| |++ |+++|++|+++ +...| ||| ||+. |
T Consensus 410 ---L~~~~~~~~~~v~lVN---Tgw~gg----~yg~g~r~~~~~tr~~i~ai~~G~l~~~~~~~~~~fg~~vp~~----~ 475 (529)
T 1j3b_A 410 ---LGEKIRKHAPRVYLVN---TGWTGG----PYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLE----A 475 (529)
T ss_dssp ---HHHHHHHHCCEEEEEE---CSEESS----STTTSEECCHHHHHHHHHHHHHTGGGGSCEEECTTTCCEEESC----B
T ss_pred ---HHHhhhhcCCeEEEEc---CCcccC----ccCCCccCCHHHHHHHHHHHhcCCccCCceeECCccCccCccc----C
Confidence 6688888999999999 887776 69999999 886 99999999864 55668 999 9998 9
Q ss_pred CCCCchhhhHhhhcCCHHHHHHHHHHHHHHHHH---hhCCCccHHHHH
Q psy13077 575 TNLASDVDLEELFSFDKSFWEQEVQDLQRYFNE---QLGADLPTAIQA 619 (630)
Q Consensus 575 ~Gl~~~~~~~~~~~~d~~~w~~e~~~l~~~f~~---~~~~~lP~ei~~ 619 (630)
+|||++++.|+.+|.|+++|++++++|+++|.+ ||.+..++++++
T Consensus 476 ~gv~~~~l~P~~~w~~~~~y~~~a~~L~~~f~~nf~~f~~~~~~~~~~ 523 (529)
T 1j3b_A 476 PGVPQELLNPRETWADKEAYDQQARKLARLFQENFQKYASGVAKEVAE 523 (529)
T ss_dssp TTBCGGGGCGGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCChhhcCcccccCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHh
Confidence 999999999999999999999999999999987 555556665554
No 5
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=100.00 E-value=7.3e-100 Score=835.11 Aligned_cols=478 Identities=18% Similarity=0.242 Sum_probs=418.8
Q ss_pred HHHhhhcCCCcEEEeCCCHHHHHHHHHHHHHCC----ccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCC
Q psy13077 38 DNCVELCQPSDVHICDGSEREYKELIDLMVKDK----TLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTK 113 (630)
Q Consensus 38 ~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~~G----e~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~ 113 (630)
.+..+||.|++||+|++.++ |+++|+++| |+..|+ ..|+++ ..++.+|||||+|||||.++.+ +
T Consensus 12 ~~~~gi~~~~~v~~n~~~~~----L~e~al~~~~~~~eeg~l~-~~Gal~-~~tg~~tgRsp~dk~Iv~~~~~------~ 79 (540)
T 2olr_A 12 LEAYGISDVHDIVYNPSYDL----LYQEELDPSLTGYERGVLT-NLGAVA-VDTGIFTGRSPKDKYIVRDDTT------R 79 (540)
T ss_dssp HHHTTCCCCCCEEESCCHHH----HHHHHHCTTCCGGGCEEEC-TTSCEE-ECCCSCSSCCGGGEEEECSTTT------T
T ss_pred hhhcCCCCCCeEEeCCCHHH----HHHHHHhcCCCccccceec-CCCCEE-EcCCCcccCCCCceEEeCCCCC------c
Confidence 45789999999999999655 999999999 335576 688855 6677779999999999987774 2
Q ss_pred CCccC-C------CCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCC
Q psy13077 114 PGVKG-T------LGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIG 184 (630)
Q Consensus 114 ~gi~~-~------~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~ 184 (630)
+.+|| + .|++++++.|+ +|++++.++|++|+|||+|+++|+ +|.+++.|+ |||+|||+|+|++|+ |+.
T Consensus 80 ~~i~w~~~~~~~~~N~~~~~e~f~-~l~~~~~~~l~~k~lyv~d~~~G~--d~~~~~~vr~ite~a~~alf~~nLf~rp~ 156 (540)
T 2olr_A 80 DTFWWADKGKGKNDNKPLSPETWQ-HLKGLVTRQLSGKRLFVVDAFCGA--NPDTRLSVRFITEVAWQAHFVKNMFIRPS 156 (540)
T ss_dssp TTSCCTTSSSSCCSCEEECHHHHH-HHHHHHHHHHTTSCEEEEEEEESS--STTTCEEEEEEESCHHHHHHHHHHSBCCC
T ss_pred cccccccccccccccCCCCHHHHH-HHHHHHHHHHcCCCEEEEeeeeeC--ChhhceeEEEEeCHHHHHHHHHHhhcCCC
Confidence 34555 3 59999999998 599999999999999999999998 999999999 899999999999999 999
Q ss_pred hHHhhhcCCCCCceEEEEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhc
Q psy13077 185 TPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKR 264 (630)
Q Consensus 185 ~~~l~~~~~~~~Fv~~~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~ 264 (630)
.+++..+.+ ||+ +++...+..++-..+ +++++ ++|++|+++++++|+||.|+|| +||++ ||+||+++++
T Consensus 157 ~ee~~~~~p--d~~-i~~~~~~~~p~f~~~---G~~s~-~~v~~~~~~~~~~I~Gt~Y~Ge---mKK~~-ftl~n~~l~~ 225 (540)
T 2olr_A 157 DEELAGFKP--DFI-VMNGAKCTNPQWKEQ---GLNSE-NFVAFNLTERMQLIGGTWYGGE---MKKGM-FSMMNYLLPL 225 (540)
T ss_dssp HHHHHTCCC--SEE-EEEETTCCCTTTTTT---TCSSS-CEEEEETTTTEEEEESCCCTHH---HHHHH-HHHHHHHTGG
T ss_pred hHHhcCCCC--CEE-EEEeccCCCCCcccC---CccCc-cEEEEEccCCeEEEeCCcCchH---hhhhH-HHHhHHHHHH
Confidence 999999887 898 888732221211111 56788 7999999999999999999999 99996 9999999999
Q ss_pred cCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEec
Q psy13077 265 EGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVA 343 (630)
Q Consensus 265 eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~ 343 (630)
+|||+|||+++ .+++|++++|| |||||||||||| +| + +.+||||+ +| +++|+ ||+|+|||||+
T Consensus 226 ~G~L~mH~san--vg~~g~~~lff--GlSGtGKTTLs~-d~---~--r~lIgDDe~~w---~~~Gv---fn~EgGcyak~ 289 (540)
T 2olr_A 226 KGIASMHCSAN--VGEKGDVAVFF--GLSGTGKTTLST-DP---K--RRLIGDDEHGW---DDDGV---FNFEGGCYAKT 289 (540)
T ss_dssp GTCEEECEEEE--ECTTSCEEEEE--CSTTSSHHHHHC-CT---T--SEEEESSCEEE---ETTEE---EESCSEEEEEC
T ss_pred CCcEeecceee--eCCCCCEEEEE--ccCCCCHHHHhc-Cc---C--CcEEecCceee---cCCCc---ccccCceEEEe
Confidence 99999999964 47889999999 999999999999 56 3 79999997 77 89994 99999999999
Q ss_pred cCCCCCCcHHHHhhccCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCC
Q psy13077 344 PGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTI 423 (630)
Q Consensus 344 ~g~s~~~~P~i~~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~ 423 (630)
++||++.||+||+||++++|||||.++++|+++|++. +.| +|+|++||+++|||+
T Consensus 290 i~Ls~e~EP~i~~ai~~~aileNV~~d~~g~~df~d~----------------s~t---------~NtR~~yPi~~i~n~ 344 (540)
T 2olr_A 290 IKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDG----------------SKT---------ENTRVSYPIYHIDNI 344 (540)
T ss_dssp TTCCTTTSHHHHHTCSTTCEEESCEECTTSCEETTCC----------------SSC---------SCCEEEEEGGGSSSB
T ss_pred ccCCcccChhHHHhcCccceeeeeeEcCCCCeecCCC----------------Ccc---------ccceEEEEHHHCCCc
Confidence 9999999999999999999999999999999888763 224 699999999999999
Q ss_pred CCCCcCCCCcccceEEEeccCCCC-CCceEeecCccceeeccccccchhhhhhccc-CceeccCC-------ccCCCCCC
Q psy13077 424 DPNWESHEGVPISAIIFGGRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHK-GKVIMHDP-------FAMRPFFG 494 (630)
Q Consensus 424 ~~~~e~p~GvPi~aIiFg~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~-~g~~~~dP-------~a~~PF~~ 494 (630)
++++ +++||| ++|||++||++| +|||+++++.|++||| .|++||+.+|+ .|++ +| |+ .|||+
T Consensus 345 ~~~~-~~~g~P-~~IifLt~Da~gvlPPVskLt~eqA~y~F----lsG~tak~aGtE~Gv~--ep~~tfs~cFa-~PF~p 415 (540)
T 2olr_A 345 VKPV-SKAGHA-TKVIFLTADAFGVLPPVSRLTADQTQYHF----LSGFTAKLAGTERGIT--EPTPTFSACFG-AAFLS 415 (540)
T ss_dssp CCSS-SEESCE-EEEEEEECCTTSCSCSEEECCHHHHHHHH----HHCEEEEETTGGGTCC--CEEEEECGGGC-GGGCS
T ss_pred CCcc-ccCCCC-CEEEEEecCCcCCCCCceeCCHHHHHHHH----HhcchhhhhccccCcc--ccCCccccccc-CcccC
Confidence 8866 799999 999999999999 8999999999999999 77789988888 5544 66 55 79999
Q ss_pred CChHHHHHHHHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCcc---ceecCc-ccc-
Q psy13077 495 YNFGDYLKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKE---IAEASP-IGY- 565 (630)
Q Consensus 495 y~~g~Y~~~wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~---~~~~tp-~G~- 565 (630)
+|+++|+++ |.+++.++..+||+|| |||+|+ ++|| |+. |+++|++|++ ++...| ||+
T Consensus 416 ~~p~~ya~~---l~~~~~~~~v~vylvN---TGw~Gg--------gkri~~~~traii~ai~~g~l~~~~~~~~~~f~~~ 481 (540)
T 2olr_A 416 LHPTQYAEV---LVKRMQAAGAQAYLVN---TGWNGT--------GKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLA 481 (540)
T ss_dssp SCHHHHHHH---HHHHHHHHTCEEEEEE---CSBCTT--------SSBCCHHHHHHHHHHHHHTHHHHSCEEEETTTTEE
T ss_pred CCHHHHHHH---HHHHHHhcCCeEEEEe---CCCcCC--------CccCCHHHHHHHHHHHhcCCcCCCCceeCCCcCcc
Confidence 999999999 5588888999999999 996653 6788 775 8999999986 455668 999
Q ss_pred cCCCCCcCCCCCCchhhhHhhhcCCHHHHHHHHHHHHHHHHHhh
Q psy13077 566 IPKPEALITTNLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQL 609 (630)
Q Consensus 566 iP~~~~l~~~Gl~~~~~~~~~~~~d~~~w~~e~~~l~~~f~~~~ 609 (630)
||++ |+|||++++.|+.+|.|+++|++++++|++.|.++|
T Consensus 482 vP~~----~~gv~~~~l~p~~~w~d~~~y~~~~~~L~~~f~~nf 521 (540)
T 2olr_A 482 IPTE----LPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNF 521 (540)
T ss_dssp EESC----CTTSCGGGGSGGGGSSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcc----CCCCChHhcCHhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999999999998844
No 6
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=100.00 E-value=4.1e-98 Score=823.01 Aligned_cols=478 Identities=19% Similarity=0.246 Sum_probs=422.0
Q ss_pred HHHHhhhcCCCcEEEeCCCHHHHHHHHHHHHH---CC-ccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCC
Q psy13077 37 IDNCVELCQPSDVHICDGSEREYKELIDLMVK---DK-TLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDT 112 (630)
Q Consensus 37 v~~~~~l~~p~~I~~~~gs~ee~~~L~~~~~~---~G-e~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~ 112 (630)
-.+..+||.|++||+|+++++ |+++|++ +| +...|+ ..|+++ ..++.+||||++|||||.++.+.
T Consensus 6 ~~~~~g~~~~~~i~~n~~~~~----L~e~a~~~~~~~~~eg~l~-~~Gal~-~~tg~~tgRsp~dk~iv~~~~~~----- 74 (532)
T 1ytm_A 6 SLAKYGITGATNIVHNPSHEE----LFAAETQASLEGFEKGTVT-EMGAVN-VMTGVYTGRSPKDKFIVKNEASK----- 74 (532)
T ss_dssp HHHHHTCCCCSEEEESCCHHH----HHHHHTCTTCCGGGCEEEC-TTSSEE-ECCTTCCSBCGGGEEEECSGGGT-----
T ss_pred chHhcCCCCCCeEEECCCHHH----HHHHHHhhccCCcccceec-CCCCEE-EcCCCcccCCCCceEEeCCCCcc-----
Confidence 346789999999999999988 9999999 88 335576 688865 56666799999999999887753
Q ss_pred CCCccC------CCCCcCCHHHHHHHHHhhhhhhcCCCeEEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCC
Q psy13077 113 KPGVKG------TLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIG 184 (630)
Q Consensus 113 ~~gi~~------~~n~~~~~~~~~~~L~~~~~g~m~GrtmyV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~ 184 (630)
+ +|| +.|++++++.|+ +|++++.++|++|+|||+|+++|. +|.+++.|+ |||+|||+|++++|+ |+.
T Consensus 75 -~-i~w~~~~~~~~n~~~~~e~f~-~l~~~~~~~l~~k~l~v~d~~~G~--d~~~~~~vr~it~~a~~~lf~~nLf~rp~ 149 (532)
T 1ytm_A 75 -E-IWWTSDEFKNDNKPVTEEAWA-QLKALAGKELSNKPLYVVDLFCGA--NENTRLKIRFVMEVAWQAHFVTNMFIRPT 149 (532)
T ss_dssp -T-SCCCCSSSCCSCEEECHHHHH-HHHHHHHHHHSSSEEEEEEEEESS--CTTTCEEEEEEESCHHHHHHHHHHSBCCC
T ss_pred -c-ccccccccCcccCCCCHHHHH-HHHHHHHHHHcCCCEEEEEEEeeC--ChhhceeEEEEeCHHHHHHHHHHhccCCC
Confidence 3 455 558999999998 599999999999999999999997 999999999 899999999999999 999
Q ss_pred hHHhhhcCCCCCceEEEEecC-CCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhh
Q psy13077 185 TPVLNLLDADQPFVKALHSVG-TPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAK 263 (630)
Q Consensus 185 ~~~l~~~~~~~~Fv~~~hs~g-~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~ 263 (630)
.+++..+.+ ||+ +++.++ .+..+.. + +++++ ++|++|+++++++|+||.|+|| +||++ ||+||++++
T Consensus 150 ~ee~~~f~p--d~~-i~~~p~~f~~~~~~-~---G~~s~-~~v~~n~~~~~~~I~gt~Y~Ge---mKK~~-ftl~n~~~~ 217 (532)
T 1ytm_A 150 EEELKGFEP--DFV-VLNASKAKVENFKE-L---GLNSE-TAVVFNLAEKMQIILNTWYGGE---MKKGM-FSMMNFYLP 217 (532)
T ss_dssp HHHHTTCCC--SEE-EEEETTCCCTTTTT-T---TCSSS-CEEEEETTTTEEEEESCCCTTH---HHHHH-HHHHHHHTG
T ss_pred hHHhccCCC--CEE-EEECCccccCCccc-C---CCCCc-eEEEEECCCCEEEEeCCccCch---hhHhH-HHHHHHHHH
Confidence 999999877 898 999888 5433221 2 66888 7999999999999999999999 99996 999999999
Q ss_pred ccCcccccchhccccCCCC-CEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeE
Q psy13077 264 REGWLAEHMLILGITNPEG-QKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFG 341 (630)
Q Consensus 264 ~eGwLaeHm~i~gv~~p~G-~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fg 341 (630)
++|||+|||++ .+ +++| ++++|| |||||||||||| +| + +.+||||+ +| ++||+ ||+|+||||
T Consensus 218 ~~G~L~~H~sa-nv-~~~g~~~~~ff--GlSGtGKTTLs~-d~---~--r~lIgDDe~~w---~~~Gv---fn~EgGcya 281 (532)
T 1ytm_A 218 LQGIAAMHCSA-NT-DLEGKNTAIFF--GLSGTGKTTLST-DP---K--RLLIGDDEHGW---DDDGV---FNFEGGCYA 281 (532)
T ss_dssp GGTCEEEEEEE-EE-ETTSCSEEEEE--CCTTSSHHHHHC-CT---T--EEEEESSEEEE---CSSCE---EESCSEEEE
T ss_pred HCCcEeecCee-ee-CCCCCeEEEEE--ecCCCCHHHHhh-Cc---C--CCEEECCeeee---ccCCc---eeccceEEE
Confidence 99999999996 23 6788 999999 999999999999 56 3 89999997 77 89994 899999999
Q ss_pred eccCCCCCCcHHHHhhccCCceeEcceEcCCCceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCC
Q psy13077 342 VAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCP 421 (630)
Q Consensus 342 k~~g~s~~~~P~i~~ai~~~tIf~NV~~~~dg~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~p 421 (630)
|+++||++.||+||++|++++|+|||.+|+||.|+|++.+ .| ||+|++||+++||
T Consensus 282 k~i~Ls~~~EP~i~~ai~~~ailENV~~d~~g~vd~~d~s----------------~t---------~NtR~~~P~~~i~ 336 (532)
T 1ytm_A 282 KVINLSKENEPDIWGAIKRNALLENVTVDANGKVDFADKS----------------VT---------ENTRVSYPIFHIK 336 (532)
T ss_dssp ECTTCCTTTCHHHHHHCSTTCEEESCEECTTCCEETTCCS----------------SC---------SCCEEEEEGGGSS
T ss_pred EeccCCCccChhHHHhcCcCceeeeeEECCCCccccCCCc----------------cc---------ccceEEEEHHHCC
Confidence 9999999999999999999999999999999998988743 24 6999999999999
Q ss_pred CCC-CCCcCCCCcccceEEEeccCCCC-CCceEeecCccceeeccccccchhhhhhccc-CceeccCC-------ccCCC
Q psy13077 422 TID-PNWESHEGVPISAIIFGGRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHK-GKVIMHDP-------FAMRP 491 (630)
Q Consensus 422 n~~-~~~e~p~GvPi~aIiFg~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~-~g~~~~dP-------~a~~P 491 (630)
|++ ++ +++|+| ++|||++||++| +|||+++++.|++||| .|++||+++|| .|+. +| |+ .|
T Consensus 337 n~~~~~--~~~g~P-~~IifL~~DafgvlPPvsklt~~qa~y~F----lsG~tak~aGtE~Gv~--ep~~tfs~cF~-~P 406 (532)
T 1ytm_A 337 NIVKPV--SKAPAA-KRVIFLSADAFGVLPPVSILSKEQTKYYF----LSGFTAKLAGTERGIT--EPTPTFSSCFG-AA 406 (532)
T ss_dssp SBCCSS--SEESCE-EEEEEEECCTTSCSCSEEECCHHHHHHHH----HHCEEEECTTSBTTCC--SCEEEECGGGC-GG
T ss_pred CcccCC--CcCCCC-ceEEEEecCCCCCCCCceecCHHHHHHHH----HcCCcccccccccCcc--ccCCccccccc-CC
Confidence 998 65 899999 999999999999 8999999999999998 78888888898 5555 66 55 79
Q ss_pred CCCCChHHHHHHHHHHHHhhccCCCcEEEEeeeeeCCCCCcccCCCcchhHH-HHH---HHHhHhcCcccee---cCc-c
Q psy13077 492 FFGYNFGDYLKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRV-LDW---ILRRVENNKEIAE---ASP-I 563 (630)
Q Consensus 492 F~~y~~g~Y~~~wl~lg~~~~~~~pkif~VN~F~~g~~G~flWpG~G~n~Rv-L~w---i~~r~~~G~~~~~---~tp-~ 563 (630)
|+++|+++|+++ |.+++.++..+||+|| |||+ |+++|| |+. |+++|++|++..+ ..| |
T Consensus 407 F~~~~~~~ya~~---L~~~i~~~~~~vylvN---Tg~~--------G~g~r~~~~~Tr~ii~ai~~G~l~~~~~~~~~~f 472 (532)
T 1ytm_A 407 FLTLPPTKYAEV---LVKRMEASGAKAYLVN---TGWN--------GTGKRISIKDTRGIIDAILDGSIDTANTATIPYF 472 (532)
T ss_dssp GCCSCHHHHHHH---HHHHHHHHTCEEEEEE---CSBC--------TTSSBCCHHHHHHHHHHHHTSGGGGSCEEEETTT
T ss_pred ccCCCHHHHHHH---HHHHHHhcCCeEEEEe---CCcc--------ccCccCCHHHHHHHHHHHhcCCcCCCCceeCCCC
Confidence 999999999999 5577877899999999 9954 456888 775 8899999997644 468 9
Q ss_pred cc-cCCCCCcCCCCCCchhhhHhhhcCCHHHHHHHHHHHHHHHHHhhCC
Q psy13077 564 GY-IPKPEALITTNLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGA 611 (630)
Q Consensus 564 G~-iP~~~~l~~~Gl~~~~~~~~~~~~d~~~w~~e~~~l~~~f~~~~~~ 611 (630)
|+ ||+. |+|||++++.|+.+|.|+++|++++++|+++|.++|..
T Consensus 473 g~~vP~~----~~gv~~~~l~p~~~w~d~~~y~~~a~~L~~~F~~nf~~ 517 (532)
T 1ytm_A 473 NFTVPTE----LKGVDTKILDPRNTYADASEWEVKAKDLAERFQKNFKK 517 (532)
T ss_dssp TEEEESC----CTTSCTGGGSGGGGSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CccCccc----CCCCCHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99 9998 99999999999999999999999999999999986643
No 7
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=100.00 E-value=2.7e-98 Score=823.82 Aligned_cols=484 Identities=19% Similarity=0.210 Sum_probs=423.5
Q ss_pred CCcEEEeCCCHHHHHHHHHHHHHCCccccccCCCCcEEEeeCCCcccccCCCEEEEcCCCcccCcCCCCCccC-CCCCcC
Q psy13077 46 PSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG-TLGNWI 124 (630)
Q Consensus 46 p~~I~~~~gs~ee~~~L~~~~~~~Ge~~~L~~~~g~~l~~t~p~d~aR~~~~tfIv~~~~~d~gp~~~~gi~~-~~n~~~ 124 (630)
|++||+|++++| |+++|+++|++..|+ ..|+++ ..++.+|||+++|||||.++.++ +.+|| +.|+++
T Consensus 1 ~~~v~~n~~~~e----L~e~A~~~~eg~~lt-~~Gal~-~~tg~~tgRsp~dk~iv~~~~~~------~~i~w~~~n~~~ 68 (524)
T 1ii2_A 1 PPTIHRNLLSPE----LVQWALKIEKDSRLT-ARGALA-VMSYAKTGRSPLDKRIVDTDDVR------ENVDWGKVNMKL 68 (524)
T ss_dssp CCEEEESCCHHH----HHHHHHHHCTTCEEC-TTSCEE-ECCTTCSSBCGGGEEEECCHHHH------TTSCBTTTBCEE
T ss_pred CCeeEeCCCHHH----HHHHHHHhCCCcEEc-CCCCEE-EecCcccCCCcCceEEeCCCCCc------cccccCcCcccC
Confidence 678999999988 999999999986787 688865 56666799999999999877642 33444 458999
Q ss_pred CHHHHHHHHHhhhhhhcCCCe-EEEEeccccCCCCCCCccceE-EccchHHHhhhhhcc-cCChHHhhhc-CCCCCceEE
Q psy13077 125 SPQDYEEAIMQRFPGCMKGRT-MYVIPFSMGPVGSPLSKIGVE-ITDSPYVVGSMRIMT-RIGTPVLNLL-DADQPFVKA 200 (630)
Q Consensus 125 ~~~~~~~~L~~~~~g~m~Grt-myV~~~~~Gp~gsp~~~~gV~-iTdsayv~l~m~im~-R~~~~~l~~~-~~~~~Fv~~ 200 (630)
+++.|+ +|++++.++|++|+ |||+|+++|. +|.+++.|| ||+++||+|+|++|+ |+..++++.+ .+ ||+ +
T Consensus 69 ~~e~f~-~l~~~~~~~l~~k~~l~v~d~~~G~--d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~p--d~~-i 142 (524)
T 1ii2_A 69 SEESFA-RVRKIAKEFLDTREHLFVVDCFAGH--DERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEP--DYV-I 142 (524)
T ss_dssp CHHHHH-HHHHHHHHHHHTSSEEEEEEEEECS--STTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSC--SEE-E
T ss_pred CHHHHH-HHHHHHHHHHcCCCcEEEEeeeeec--ChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCC--CEE-E
Confidence 999998 59999999999997 9999999998 999999999 899999999999996 9999999988 55 898 8
Q ss_pred EEecCCCCCCCCcCCCCCCCCcceEEEEcCCCCeEEEEccccccccccccceeehhhhhhhhhccCcccccchhccccCC
Q psy13077 201 LHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNP 280 (630)
Q Consensus 201 ~hs~g~p~~~~~~~~~wpcn~e~~~I~~~~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~eGwLaeHm~i~gv~~p 280 (630)
++.+.....+.. + +++|+ ++|++|+++++++|+||.|+|| +||++ ||+||++++++|||+|||+++ .++
T Consensus 143 ~~~p~f~~~~~~-~---G~~s~-~~v~~~~~~~~~~I~Gt~Y~Ge---mKK~~-ftl~n~~~~~~g~L~~H~san--~g~ 211 (524)
T 1ii2_A 143 YNAGECKADPSI-P---GLTST-TCVALNFKTREQVILGTEYAGE---MKKGI-LTVMFELMPQMNHLCMHASAN--VGK 211 (524)
T ss_dssp EEETTSCCCTTS-T---TCCSS-CEEEEETTTTEEEEESCCCTHH---HHHHH-HHHHHHHHHHTTCEEESEEEE--ECT
T ss_pred EeCCCccCCccc-C---CcCcc-cEEEEECCCCeEEEECCcchHH---HHHHH-HHHHHHHHHHCCcEeecceee--eCC
Confidence 998885443211 2 67888 7999999999999999999999 99996 999999999999999999954 468
Q ss_pred CCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccE-EEEEECCCccEEEeccCCCeeEeccCCCCCCcHHHHhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDI-AWMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVF 359 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDi-aW~~~~~dG~l~a~NpE~G~fgk~~g~s~~~~P~i~~ai~ 359 (630)
+|++++|| |||||||||||| +| + +.+||||+ +| ++|| +||+|+|||+|+++||++++|+||++|+
T Consensus 212 ~g~~~~ff--GlSGtGKTTLs~-d~---~--r~lIgDDe~~w---~~~G---vfn~E~G~y~K~idl~~e~eP~I~~ai~ 277 (524)
T 1ii2_A 212 QGDVTVFF--GLSGTGKTTLSA-DP---H--RNLIGDDEHVW---TDRG---VFNIEGGCYAKAIGLNPKTEKDIYDAVR 277 (524)
T ss_dssp TCCEEEEE--CCTTSSHHHHHC-CT---T--SEEEESSCEEE---CSSC---EEESCSEEEEECTTCCTTTCHHHHHTCS
T ss_pred CCCEEEEE--ccCCcchhhhhh-cc---C--CeEEecchhhc---cCCC---ccccccceEEEecCCCcccChhHHHhcC
Confidence 89999999 999999999999 66 4 78999997 77 7899 4899999999999999999999999999
Q ss_pred CCceeEcceEcCC-CceeccCCccCCCCCccccccCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCcCCCCcccceE
Q psy13077 360 KNTIFTNVASTSD-GGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAI 438 (630)
Q Consensus 360 ~~tIf~NV~~~~d-g~v~w~g~~~~~p~~~~~~dw~g~~~t~~~~~~~aHpNsRft~P~~~~pn~~~~~e~p~GvPi~aI 438 (630)
+++|+|||.++++ +.|||+|. +.| ||+|++||+++|||++++ ++.|+| ++|
T Consensus 278 ~~~ilENV~~d~~g~~vd~~d~----------------s~t---------~NtR~~~P~~~i~n~~~~--~~~g~P-~~I 329 (524)
T 1ii2_A 278 FGAVAENCVLDKRTGEIDFYDE----------------SIC---------KNTRVAYPLSHIEGALSK--AIAGHP-KNV 329 (524)
T ss_dssp TTCEEESCCBCTTTCSBCTTCC----------------SSC---------SCCEEEEEGGGSTTCCSS--CEECCE-EEE
T ss_pred cCceEEEEEECCCCCcccCCCC----------------ccc---------CCceEEEEHHHCCCCCCc--ccCCCC-ceE
Confidence 9999999999987 46777763 334 799999999999999885 889999 899
Q ss_pred EEeccCCCC-CCceEeecCccceeeccccccchhhhhhcccCce-e-----cc-CCccCCCCCCCChHHHHHHHHHHHHh
Q psy13077 439 IFGGRRPQG-VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKV-I-----MH-DPFAMRPFFGYNFGDYLKHWLSMEQR 510 (630)
Q Consensus 439 iFg~rd~~g-lPpV~e~~~wq~gv~lGas~~Se~TAa~~g~~g~-~-----~~-dP~a~~PF~~y~~g~Y~~~wl~lg~~ 510 (630)
|||+||++| +|||+++++.|++||| .|++||+++||+.+ + .+ +||+ .||+++|+++|+++ |.++
T Consensus 330 ifl~~Da~gvlPPVskLt~eqa~y~F----~sG~Tak~agtE~G~~~ep~~~fs~~fg-~PF~~~~~~~ya~~---L~~~ 401 (524)
T 1ii2_A 330 IFLTNDAFGVMPPVARLTSAQAMFWF----VMGYTANVPGVEAGGTRTARPIFSSCFG-GPFLVRHATFYGEQ---LAEK 401 (524)
T ss_dssp EEEECCTTSCSCSEEEECHHHHHHHH----HHCEEEECSSSBTTCCSSCEEEECGGGC-GGGCCSCHHHHHHH---HHHH
T ss_pred EEEEcCCcCCCCCcEecCHHHHHHHH----hcCccccccccccCccccCceeeccccC-CCccCCCHHHHHHH---HHHH
Confidence 999999999 8999999999999998 67777777777433 2 22 4566 79999999999999 5577
Q ss_pred hccCCCcEEEEeeeeeCCCCCcccCCCcc-hhHH-HHH---HHHhHhcCc---cceecCc-ccc-cCCCCCcCCCCCCch
Q psy13077 511 TNAKLPKVFHVNWFRKGSQGEFLWPGFGE-NIRV-LDW---ILRRVENNK---EIAEASP-IGY-IPKPEALITTNLASD 580 (630)
Q Consensus 511 ~~~~~pkif~VN~F~~g~~G~flWpG~G~-n~Rv-L~w---i~~r~~~G~---~~~~~tp-~G~-iP~~~~l~~~Gl~~~ 580 (630)
+.++..+||+|| |||+|+ +||+ ++|| |+. |+++|++|+ +.+...| ||+ ||+. |+|||++
T Consensus 402 i~~~~~~vylvN---Tg~~Gg----~yg~~g~r~~~~~tra~i~ai~~G~l~~~~~~~~~~fg~~vP~~----~~gv~~~ 470 (524)
T 1ii2_A 402 MQKHNSRVWLLN---TGYAGG----RADRGAKRMPLRVTRAIIDAIHDGTLDRTEYEEYPGWGLHIPKY----VAKVPEH 470 (524)
T ss_dssp HHHHTCEEEEEE---CSEESS----CGGGTCEECCHHHHHHHHHHHHSSSGGGSCEEEETTTTEEEESC----CTTSCHH
T ss_pred HHHhCCeEEEEe---CCcccc----ccCccCccCCHHHHHHHHHHHHcCCccCCceeECCccCccCCcc----CCCCChh
Confidence 878899999999 998886 6899 8999 886 999999999 4666778 999 9998 9999999
Q ss_pred hhhHhhhcCCHHHHHHHHHHHHHHHHHhhC----CCccHHHHH
Q psy13077 581 VDLEELFSFDKSFWEQEVQDLQRYFNEQLG----ADLPTAIQA 619 (630)
Q Consensus 581 ~~~~~~~~~d~~~w~~e~~~l~~~f~~~~~----~~lP~ei~~ 619 (630)
++.|+.+|.|+++|++++++|+++|.++|. +.+.+++++
T Consensus 471 ~l~p~~~w~d~~~y~~~a~~L~~~F~~nf~~~f~~~~~~~~~~ 513 (524)
T 1ii2_A 471 LLNPRKAWKDVRQFNETSKELVAMFQESFSARFAAKASQEMKS 513 (524)
T ss_dssp HHSHHHHCSCHHHHHHHHHHHHHHHHHHHHHHTGGGCCHHHHH
T ss_pred hcChhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHh
Confidence 999999999999999999999999987654 456766654
No 8
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.78 E-value=0.00087 Score=65.09 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=44.1
Q ss_pred ccccchhccccCCCCCEEEEEeEcCCccchhhhcc--cCCCCCCCeeEEeeccEEEEEECCCccEEEeccC
Q psy13077 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM--LNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPE 336 (630)
Q Consensus 268 LaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam--~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~NpE 336 (630)
+..|.+.+.+ .|+-..|. |+||+||||||. +. .|| .+|.||...++.. +|+|++..|+
T Consensus 5 ~~lHas~v~v---~G~gvli~--G~SGaGKStlal~L~~---rG~--~lvaDD~v~i~~~-~~~l~g~~p~ 64 (181)
T 3tqf_A 5 QTWHANFLVI---DKMGVLIT--GEANIGKSELSLALID---RGH--QLVCDDVIDLKQE-NNQLIGSCPS 64 (181)
T ss_dssp EEEESEEEEE---TTEEEEEE--ESSSSSHHHHHHHHHH---TTC--EEEESSEEEEEES-SSCEEEECCT
T ss_pred EEEEEEEEEE---CCEEEEEE--cCCCCCHHHHHHHHHH---cCC--eEecCCEEEEEEe-CCEEEEeCch
Confidence 5679886643 57668888 999999999986 22 374 8999998888854 5587777775
No 9
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.39 E-value=0.0023 Score=66.89 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=49.6
Q ss_pred hhhhhhhh-ccCcccccchhccccCCCCCEEEEEeEcCCccchhhhcc--cCCCCCCCeeEEeeccEEEEEECCCccEEE
Q psy13077 256 RIGSTIAK-REGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM--LNPTLPGYKVECVGDDIAWMKFDKEGVLRA 332 (630)
Q Consensus 256 rias~~a~-~eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam--~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a 332 (630)
.+.+|+.. --.++..|.+.+.+ .|+...|. |+||+||||||. +. -| ..+|+||...++...++.|.+
T Consensus 120 ~l~~~l~~~~~~~~~~H~~~v~~---~g~~vl~~--G~sG~GKSt~a~~l~~---~g--~~lv~dD~~~i~~~~~~~l~g 189 (314)
T 1ko7_A 120 RLTTFLEHELARTTSLHGVLVDV---YGVGVLIT--GDSGIGKSETALELIK---RG--HRLVADDNVEIREISKDELIG 189 (314)
T ss_dssp HHHHHHHHHTCEEEEEESEEEEE---TTEEEEEE--ESTTSSHHHHHHHHHH---TT--CEEEESSEEEEEESSSSCEEE
T ss_pred HHHHHHHHhhccceeeeEEEEEE---CCEEEEEE--eCCCCCHHHHHHHHHh---cC--CceecCCeEEEEEcCCCeEEE
Confidence 34455554 23689999986654 57678888 999999999885 22 25 489999988888665656655
Q ss_pred ecc
Q psy13077 333 INP 335 (630)
Q Consensus 333 ~Np 335 (630)
-.|
T Consensus 190 ~~~ 192 (314)
T 1ko7_A 190 RAP 192 (314)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 10
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.28 E-value=0.0026 Score=62.84 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=42.7
Q ss_pred cCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCCCCeeEEeeccEEEEEECCCccEEEecc
Q psy13077 265 EGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINP 335 (630)
Q Consensus 265 eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~pgwk~~lIGDDiaW~~~~~dG~l~a~Np 335 (630)
.+.+..|.+.+.+ .|+...|+ ||||+||||||.. =...|+ ++|.||-..+.-..+++|..-++
T Consensus 20 a~~~~lHa~~v~~---~g~~ilI~--GpsGsGKStLA~~-La~~g~--~iIsdDs~~v~~~~~~~liGtak 82 (205)
T 2qmh_A 20 AERRSMHGVLVDI---YGLGVLIT--GDSGVGKSETALE-LVQRGH--RLIADDRVDVYQQDEQTIVGAAP 82 (205)
T ss_dssp -CCCCEESEEEEE---TTEEEEEE--CCCTTTTHHHHHH-HHTTTC--EEEESSEEEEEECSTTCEEEECC
T ss_pred CcceeeeEEEEEE---CCEEEEEE--CCCCCCHHHHHHH-HHHhCC--eEEecchhheeecCCceEEEECC
Confidence 4688999986643 46667777 9999999999872 112354 99999974444355655444443
No 11
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.24 E-value=0.0022 Score=66.99 Aligned_cols=92 Identities=16% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCCCeEEEEccccccccccccceeehhhhhhhhhc-cCcccccchhccccCCCCCEEEEEeEcCCccchhhhcccCCCCC
Q psy13077 230 PAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKR-EGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLP 308 (630)
Q Consensus 230 ~~~r~i~s~Gs~YgGnall~KK~~alrias~~a~~-eGwLaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam~~p~~p 308 (630)
-++..|-++-|.+.--.+.. ++.+++..+ -.++..|.+.+.+ .|.-..|. |+||+||||||.. =-..
T Consensus 103 A~e~~ipLl~T~~~t~~~~~------~L~~~l~~~la~~~~~H~~~v~~---~g~gvli~--G~sG~GKStlal~-l~~~ 170 (312)
T 1knx_A 103 NQTYQVPILKTDFFSTELSF------TVETYINEQFATVAQIHGVLLEV---FGVGVLLT--GRSGIGKSECALD-LINK 170 (312)
T ss_dssp GGGTCCCEEEESSCGGGGTT------THHHHHHHHTCCCEEEEEEEEEE---TTEEEEEE--ESSSSSHHHHHHH-HHTT
T ss_pred HHHcCCEEEEeCccHHHHHH------HHHHHHHHHhhhcceeEEEEEEE---CCEEEEEE--cCCCCCHHHHHHH-HHHc
Confidence 34555666677766554433 223333332 2479999986654 46567777 9999999999862 1124
Q ss_pred CCeeEEeeccEEEEEECCCccEEEeccC
Q psy13077 309 GYKVECVGDDIAWMKFDKEGVLRAINPE 336 (630)
Q Consensus 309 gwk~~lIGDDiaW~~~~~dG~l~a~NpE 336 (630)
| ..+|+||...++.. +|.+++-.|+
T Consensus 171 G--~~lv~DD~v~i~~~-~~~l~g~~p~ 195 (312)
T 1knx_A 171 N--HLFVGDDAIEIYRL-GNRLFGRAQE 195 (312)
T ss_dssp T--CEEEEEEEEEEEEE-TTEEEEEECT
T ss_pred C--CEEEeCCEEEEEEe-CCeEEEeCch
Confidence 7 48999999888854 3435554443
No 12
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.75 E-value=0.019 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||+-+
T Consensus 7 ~~gei~~l~--G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLI--GSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEE--CCTTSCHHHHHHH
T ss_pred CCCEEEEEE--CCCCCCHHHHHHH
Confidence 568777777 9999999999873
No 13
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.68 E-value=0.024 Score=53.52 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||+-
T Consensus 23 ~~g~~i~l~--G~sGsGKSTl~~ 43 (200)
T 3uie_A 23 QKGCVIWVT--GLSGSGKSTLAC 43 (200)
T ss_dssp SCCEEEEEE--CSTTSSHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 568777777 999999999975
No 14
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.59 E-value=0.029 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||+-
T Consensus 5 ~~g~ii~l~--Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 5 NKANLFIIS--APSGAGKTSLVR 25 (205)
T ss_dssp CCCCEEEEE--CCTTSCHHHHHH
T ss_pred CCCcEEEEE--CcCCCCHHHHHH
Confidence 357777777 999999999975
No 15
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.45 E-value=0.03 Score=52.24 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=16.7
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...+. ||||||||||+.
T Consensus 4 ~g~~i~i~--GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLL--GAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEE--CCTTSSHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 46667777 999999999976
No 16
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.20 E-value=0.03 Score=51.71 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCCCCCCC-eeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNPTLPGY-KVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p~~pgw-k~~lIGDDi 319 (630)
+.|+...+. ||||||||||+-+--..++. .+.+=|||+
T Consensus 7 ~~g~~i~l~--G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLS--GHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEE--ECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 468777777 99999999998632212222 244445554
No 17
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.01 E-value=0.038 Score=52.59 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=17.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 18 ~~Gei~~l~--GpnGsGKSTLl~ 38 (207)
T 1znw_A 18 AVGRVVVLS--GPSAVGKSTVVR 38 (207)
T ss_dssp -CCCEEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568887777 999999999975
No 18
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.82 E-value=0.045 Score=50.99 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|....+. ||||||||||+-+
T Consensus 4 ~~g~~i~l~--G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLS--GPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEE--CSTTSCHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 457777777 9999999999863
No 19
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.72 E-value=0.038 Score=52.36 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=17.1
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|...+++ ||||||||||+-
T Consensus 11 ~~~~i~l~--G~sGsGKsTl~~ 30 (204)
T 2qor_A 11 RIPPLVVC--GPSGVGKGTLIK 30 (204)
T ss_dssp CCCCEEEE--CCTTSCHHHHHH
T ss_pred cCCEEEEE--CCCCCCHHHHHH
Confidence 47777777 999999999976
No 20
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.65 E-value=0.045 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||+-+
T Consensus 27 ~~g~~i~l~--G~~GsGKSTl~~~ 48 (200)
T 4eun_A 27 EPTRHVVVM--GVSGSGKTTIAHG 48 (200)
T ss_dssp -CCCEEEEE--CCTTSCHHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 568778888 9999999999763
No 21
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.59 E-value=0.042 Score=52.29 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=16.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||+-
T Consensus 20 ~~g~~v~I~--G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQLVALS--GAPGSGKSTLSN 40 (208)
T ss_dssp CSCEEEEEE--CCTTSCTHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 457655566 999999999985
No 22
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.51 E-value=0.049 Score=53.35 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=17.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...+. ||||||||||.-
T Consensus 14 ~~G~ii~l~--GpsGsGKSTLlk 34 (219)
T 1s96_A 14 AQGTLYIVS--APSGAGKSSLIQ 34 (219)
T ss_dssp -CCCEEEEE--CCTTSCHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 679888888 999999999964
No 23
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.43 E-value=0.043 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=17.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 21 ~~G~~~~lv--GpsGsGKSTLl~ 41 (218)
T 1z6g_A 21 NNIYPLVIC--GPSGVGKGTLIK 41 (218)
T ss_dssp -CCCCEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 668888888 999999999965
No 24
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.32 E-value=0.044 Score=51.62 Aligned_cols=22 Identities=41% Similarity=0.265 Sum_probs=16.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|...-+. ||||||||||+-+
T Consensus 4 ~~~~~i~i~--G~~GsGKSTl~~~ 25 (211)
T 3asz_A 4 PKPFVIGIA--GGTASGKTTLAQA 25 (211)
T ss_dssp -CCEEEEEE--ESTTSSHHHHHHH
T ss_pred CCcEEEEEE--CCCCCCHHHHHHH
Confidence 456555555 9999999999863
No 25
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.31 E-value=0.053 Score=49.58 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=17.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||+-
T Consensus 6 ~~g~~i~l~--G~~GsGKSTl~~ 26 (175)
T 1knq_A 6 HDHHIYVLM--GVSGSGKSAVAS 26 (175)
T ss_dssp TTSEEEEEE--CSTTSCHHHHHH
T ss_pred CCCcEEEEE--cCCCCCHHHHHH
Confidence 457667777 999999999986
No 26
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.30 E-value=0.056 Score=51.63 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||+-
T Consensus 6 ~~g~~i~l~--GpsGsGKsTl~~ 26 (208)
T 3tau_A 6 ERGLLIVLS--GPSGVGKGTVRE 26 (208)
T ss_dssp CCCCEEEEE--CCTTSCHHHHHH
T ss_pred CCCcEEEEE--CcCCCCHHHHHH
Confidence 458777777 999999999975
No 27
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.25 E-value=0.04 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..++. ||+|||||||+.
T Consensus 36 ~~g~~~~l~--G~~G~GKTtL~~ 56 (180)
T 3ec2_A 36 EEGKGLTFV--GSPGVGKTHLAV 56 (180)
T ss_dssp GGCCEEEEC--CSSSSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 347788888 999999999986
No 28
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.16 E-value=0.057 Score=50.92 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+|||||||++.
T Consensus 23 ~~~~~i~l~--G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLT--GYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEE--CCTTSCHHHHHH
T ss_pred CCCCEEEEE--cCCCCCHHHHHH
Confidence 457777777 999999999987
No 29
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.10 E-value=0.049 Score=49.46 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=15.9
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|....+. ||||||||||+-+
T Consensus 4 ~~~i~l~--G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLV--GPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEE--CCTTSCHHHHHHH
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 3456667 9999999999863
No 30
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.09 E-value=0.057 Score=49.27 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.5
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. |+|||||||++-
T Consensus 3 ~~~i~l~--G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILN--GGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEE--CCTTSSHHHHHH
T ss_pred ceEEEEE--CCCCCCHHHHHH
Confidence 3456666 999999999986
No 31
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.80 E-value=0.052 Score=51.64 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.6
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...+. ||||||||||.-
T Consensus 3 ~g~~i~lv--GpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLS--GPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEE--CCTTSSHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 46677777 999999999965
No 32
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.70 E-value=0.054 Score=52.18 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=13.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||+-
T Consensus 25 ~~G~ii~l~--Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 25 SVGVILVLS--SPSGCGKTTVAN 45 (231)
T ss_dssp ECCCEEEEE--CSCC----CHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568777777 999999999964
No 33
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.67 E-value=0.05 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.074 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||+.
T Consensus 23 ~~G~~~~l~--G~nGsGKSTll~ 43 (231)
T 4a74_A 23 ETQAITEVF--GEFGSGKTQLAH 43 (231)
T ss_dssp ESSEEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 568778888 999999999975
No 34
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.60 E-value=0.062 Score=51.32 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||+.
T Consensus 28 ~~G~~~~l~--GpnGsGKSTLl~ 48 (251)
T 2ehv_A 28 PEGTTVLLT--GGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHH
Confidence 678888888 999999999976
No 35
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.44 E-value=0.079 Score=52.27 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 29 ~~Ge~~~ii--G~nGsGKSTLl~ 49 (235)
T 3tif_A 29 KEGEFVSIM--GPSGSGKSTMLN 49 (235)
T ss_dssp CTTCEEEEE--CSTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 679888888 999999999964
No 36
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.43 E-value=0.063 Score=50.15 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=13.9
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+...+. ||||||||||.-
T Consensus 2 ~ii~l~--GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVIS--GPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEE--SSSSSSHHHHHH
T ss_pred CEEEEE--CCCCCCHHHHHH
Confidence 344555 999999999964
No 37
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.06 E-value=0.087 Score=49.36 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||++
T Consensus 18 ~~G~~~~i~--G~~GsGKTtl~~ 38 (220)
T 2cvh_A 18 APGVLTQVY--GPYASGKTTLAL 38 (220)
T ss_dssp CTTSEEEEE--CSTTSSHHHHHH
T ss_pred cCCEEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999988
No 38
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.90 E-value=0.087 Score=55.87 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||.-
T Consensus 28 ~~Ge~~~ll--GpsGsGKSTLLr 48 (359)
T 3fvq_A 28 DPGEILFII--GASGCGKTTLLR 48 (359)
T ss_dssp CTTCEEEEE--ESTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCchHHHHHH
Confidence 678888888 999999999854
No 39
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.60 E-value=0.099 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=18.1
Q ss_pred CCCEEEEEeEcCCccchhhhccc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.|+..++. ||+|||||||+.+
T Consensus 35 ~g~~~~l~--G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVW--GEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEE--SSSTTTTCHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 47788888 9999999999873
No 40
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.56 E-value=0.11 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 35 ~~Ge~~~li--G~nGsGKSTLl~ 55 (266)
T 4g1u_C 35 ASGEMVAII--GPNGAGKSTLLR 55 (266)
T ss_dssp ETTCEEEEE--CCTTSCHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999965
No 41
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.55 E-value=0.075 Score=49.28 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=20.9
Q ss_pred CEEEEEeEcCCccchhhhcccC-CCCCCCeeEEeeccE
Q psy13077 283 QKKYIAAAFPSACGKTNLAMLN-PTLPGYKVECVGDDI 319 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~~-p~~pgwk~~lIGDDi 319 (630)
+...+. ||||||||||+-+- .++.| .+.+-||++
T Consensus 3 ~ii~l~--G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 3 KLYIIT--GPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEEE--CSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred eEEEEE--CCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 344555 99999999997631 11233 455556664
No 42
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.55 E-value=0.086 Score=51.54 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 28 ~~Ge~~~ii--G~nGsGKSTLl~ 48 (224)
T 2pcj_A 28 KKGEFVSII--GASGSGKSTLLY 48 (224)
T ss_dssp ETTCEEEEE--ECTTSCHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 43
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.52 E-value=0.094 Score=48.26 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|....+. |+|||||||++.+
T Consensus 3 ~~g~~i~l~--G~~GsGKST~~~~ 24 (179)
T 2pez_A 3 MRGCTVWLT--GLSGAGKTTVSMA 24 (179)
T ss_dssp -CCEEEEEE--CCTTSSHHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 457666777 9999999999763
No 44
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.45 E-value=0.09 Score=49.32 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||+.
T Consensus 21 ~~G~~~~i~--G~~GsGKTtl~~ 41 (235)
T 2w0m_A 21 PQGFFIALT--GEPGTGKTIFSL 41 (235)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHH
T ss_pred cCCCEEEEE--cCCCCCHHHHHH
Confidence 568888887 999999999987
No 45
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.42 E-value=0.11 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~ 50 (237)
T 2cbz_A 29 PEGALVAVV--GQVGCGKSSLLSA 50 (237)
T ss_dssp CTTCEEEEE--CSTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679888888 9999999999653
No 46
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.26 E-value=0.12 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 30 ~~Ge~~~li--G~nGsGKSTLlk 50 (262)
T 1b0u_A 30 RAGDVISII--GSSGSGKSTFLR 50 (262)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999965
No 47
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.23 E-value=0.095 Score=49.87 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ ||||||||||+.
T Consensus 22 ~~G~~~~i~--G~~GsGKTtl~~ 42 (243)
T 1n0w_A 22 ETGSITEMF--GEFRTGKTQICH 42 (243)
T ss_dssp ETTSEEEEE--CCTTSSHHHHHH
T ss_pred cCCeEEEEE--CCCCCcHHHHHH
Confidence 678888888 999999999986
No 48
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.22 E-value=0.091 Score=46.73 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=13.6
Q ss_pred EEeEcCCccchhhhccc
Q psy13077 287 IAAAFPSACGKTNLAML 303 (630)
Q Consensus 287 f~~afpSg~GKTtLam~ 303 (630)
++-.|++||||||+|-.
T Consensus 4 I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33449999999999874
No 49
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.19 E-value=0.12 Score=54.83 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||.-
T Consensus 27 ~~Ge~~~ll--GpnGsGKSTLLr 47 (359)
T 2yyz_A 27 KDGEFVALL--GPSGCGKTTTLL 47 (359)
T ss_dssp CTTCEEEEE--CSTTSSHHHHHH
T ss_pred cCCCEEEEE--cCCCchHHHHHH
Confidence 678888888 999999999964
No 50
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.13 E-value=0.12 Score=55.36 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||.-
T Consensus 27 ~~Ge~~~ll--GpsGsGKSTLLr 47 (381)
T 3rlf_A 27 HEGEFVVFV--GPSGCGKSTLLR 47 (381)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--cCCCchHHHHHH
Confidence 679888888 999999999854
No 51
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.11 E-value=0.1 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 124 ~~Ge~vaIv--GpsGsGKSTLl~l 145 (305)
T 2v9p_A 124 PKKNCLAFI--GPPNTGKSMLCNS 145 (305)
T ss_dssp TTCSEEEEE--CSSSSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHHH
Confidence 789998888 9999999999884
No 52
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.08 E-value=0.12 Score=54.80 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 27 ~~Ge~~~ll--GpnGsGKSTLLr 47 (362)
T 2it1_A 27 KDGEFMALL--GPSGSGKSTLLY 47 (362)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCchHHHHHH
Confidence 678888888 999999999964
No 53
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.96 E-value=0.11 Score=52.29 Aligned_cols=24 Identities=46% Similarity=0.771 Sum_probs=18.5
Q ss_pred cccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 276 GITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 276 gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
++.-|.| ..+. ||+|||||||+-+
T Consensus 40 ~l~~~~G--vlL~--Gp~GtGKTtLaka 63 (274)
T 2x8a_A 40 GLVTPAG--VLLA--GPPGCGKTLLAKA 63 (274)
T ss_dssp TCCCCSE--EEEE--SSTTSCHHHHHHH
T ss_pred CCCCCCe--EEEE--CCCCCcHHHHHHH
Confidence 4445667 6677 9999999999763
No 54
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.92 E-value=0.11 Score=46.62 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.2
Q ss_pred eEcCCccchhhhcc
Q psy13077 289 AAFPSACGKTNLAM 302 (630)
Q Consensus 289 ~afpSg~GKTtLam 302 (630)
-.|+|||||||++-
T Consensus 6 l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 6 LEGPDCCFKSTVAA 19 (173)
T ss_dssp EECSSSSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 34999999999987
No 55
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.88 E-value=0.12 Score=48.18 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||+|||||||.-
T Consensus 31 ~~Ge~v~L~--G~nGaGKTTLlr 51 (158)
T 1htw_A 31 EKAIMVYLN--GDLGAGKTTLTR 51 (158)
T ss_dssp SSCEEEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 678887788 999999999864
No 56
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.88 E-value=0.13 Score=54.80 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||.-
T Consensus 35 ~~Ge~~~ll--GpnGsGKSTLLr 55 (372)
T 1v43_A 35 KDGEFLVLL--GPSGCGKTTTLR 55 (372)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCChHHHHHH
Confidence 678888888 999999999965
No 57
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.88 E-value=0.13 Score=53.73 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=16.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++..+++-+||||||||||+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 445667777999999999975
No 58
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.86 E-value=0.13 Score=47.36 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.7
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. |+|||||||+|-
T Consensus 5 ~~~i~l~--G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLI--GLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEE--CSTTSSHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 4456666 999999999987
No 59
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.82 E-value=0.11 Score=54.73 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||.-
T Consensus 24 ~~Ge~~~ll--GpnGsGKSTLLr 44 (348)
T 3d31_A 24 ESGEYFVIL--GPTGAGKTLFLE 44 (348)
T ss_dssp CTTCEEEEE--CCCTHHHHHHHH
T ss_pred cCCCEEEEE--CCCCccHHHHHH
Confidence 678888888 999999999965
No 60
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.78 E-value=0.12 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=16.2
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++...++-.|+|||||||+|.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHH
Confidence 344566666999999999986
No 61
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.74 E-value=0.13 Score=46.99 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=15.0
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|....+. |+|||||||++.
T Consensus 3 ~~~I~i~--G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVT--GVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEE--CCTTSCHHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 3445566 999999999976
No 62
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.62 E-value=0.11 Score=54.81 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||.-
T Consensus 29 ~~Ge~~~ll--GpnGsGKSTLLr 49 (353)
T 1oxx_K 29 ENGERFGIL--GPSGAGKTTFMR 49 (353)
T ss_dssp CTTCEEEEE--CSCHHHHHHHHH
T ss_pred CCCCEEEEE--CCCCCcHHHHHH
Confidence 678888888 999999999964
No 63
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.59 E-value=0.12 Score=54.71 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||.-
T Consensus 39 ~~Ge~~~ll--GpnGsGKSTLLr 59 (355)
T 1z47_A 39 REGEMVGLL--GPSGSGKTTILR 59 (355)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999965
No 64
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.58 E-value=0.12 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=17.2
Q ss_pred ccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 277 v~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.-+.| .++. ||||||||||+.
T Consensus 46 ~~~~~g--~ll~--G~~G~GKTtl~~ 67 (254)
T 1ixz_A 46 ARIPKG--VLLV--GPPGVGKTHLAR 67 (254)
T ss_dssp CCCCSE--EEEE--CCTTSSHHHHHH
T ss_pred CCCCCe--EEEE--CCCCCCHHHHHH
Confidence 333556 6777 999999999976
No 65
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.56 E-value=0.12 Score=50.63 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 32 ~~Ge~~~i~--G~nGsGKSTLl~ 52 (229)
T 2pze_A 32 ERGQLLAVA--GSTGAGKTSLLM 52 (229)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 578888888 999999999965
No 66
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.52 E-value=0.12 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 33 ~~Ge~~~i~--G~nGsGKSTLl~ 53 (247)
T 2ff7_A 33 KQGEVIGIV--GRSGSGKSTLTK 53 (247)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 578888888 999999999965
No 67
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.46 E-value=0.13 Score=50.78 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (243)
T 1mv5_A 26 QPNSIIAFA--GPSGGGKSTIFS 46 (243)
T ss_dssp CTTEEEEEE--CCTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999965
No 68
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.40 E-value=0.15 Score=51.45 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 48 ~~Gei~~li--G~NGsGKSTLlk 68 (263)
T 2olj_A 48 REGEVVVVI--GPSGSGKSTFLR 68 (263)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred cCCCEEEEE--cCCCCcHHHHHH
Confidence 578888888 999999999965
No 69
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.37 E-value=0.16 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.061 Sum_probs=16.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|....++ |+||||||||+-+
T Consensus 19 ~~~~~i~i~--G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 19 SKTFIIGIS--GVTNSGKTTLAKN 40 (207)
T ss_dssp CCCEEEEEE--ESTTSSHHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHHH
Confidence 345555555 9999999999874
No 70
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.34 E-value=0.13 Score=54.71 Aligned_cols=21 Identities=33% Similarity=0.505 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+..-+. ||||||||||.-
T Consensus 27 ~~Ge~~~ll--GpnGsGKSTLLr 47 (372)
T 1g29_1 27 KDGEFMILL--GPSGCGKTTTLR 47 (372)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCcHHHHHHH
Confidence 568888888 999999999964
No 71
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.32 E-value=0.13 Score=47.23 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=14.7
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. |+|||||||++.
T Consensus 5 ~~~I~l~--G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVT--GHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEE--ESTTSSHHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 4445555 999999999986
No 72
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.31 E-value=0.15 Score=49.72 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=16.4
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...+. ||||||||||.-
T Consensus 18 ~g~~ivl~--GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLI--GASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEE--CCTTSSHHHHHH
T ss_pred CCCEEEEE--CcCCCCHHHHHH
Confidence 47776666 999999999965
No 73
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.30 E-value=0.15 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 44 ~~Ge~~~i~--G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 44 PSGTTCALV--GHTGSGKSTIAKL 65 (260)
T ss_dssp CTTCEEEEE--CSTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 678888888 9999999999753
No 74
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.28 E-value=0.13 Score=50.73 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 30 ~~Ge~~~l~--G~nGsGKSTLl~ 50 (240)
T 1ji0_A 30 PRGQIVTLI--GANGAGKTTTLS 50 (240)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 75
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.24 E-value=0.15 Score=47.67 Aligned_cols=20 Identities=15% Similarity=0.105 Sum_probs=16.6
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|....+. |++||||||++.
T Consensus 9 ~~~~I~l~--G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFE--GLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEE--ESTTSSHHHHHH
T ss_pred cCCEEEEE--cCCCCCHHHHHH
Confidence 46666677 999999999986
No 76
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.18 E-value=0.16 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 43 ~~Ge~~~i~--G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 43 YPGKVTALV--GPNGSGKSTVAAL 64 (271)
T ss_dssp CTTCEEEEE--CSTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679888888 9999999999653
No 77
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.14 E-value=0.14 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 31 ~~Ge~~~li--G~nGsGKSTLlk 51 (257)
T 1g6h_A 31 NKGDVTLII--GPNGSGKSTLIN 51 (257)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHH
T ss_pred eCCCEEEEE--CCCCCCHHHHHH
Confidence 578888888 999999999965
No 78
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.96 E-value=0.14 Score=51.97 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 32 ~~Ge~~~ii--GpnGsGKSTLl~ 52 (275)
T 3gfo_A 32 KRGEVTAIL--GGNGVGKSTLFQ 52 (275)
T ss_dssp ETTSEEEEE--CCTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 579888888 999999999975
No 79
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.94 E-value=0.17 Score=50.93 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 44 ~~Ge~~~l~--G~NGsGKSTLlk 64 (267)
T 2zu0_C 44 HPGEVHAIM--GPNGSGKSTLSA 64 (267)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 578888888 999999999965
No 80
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.93 E-value=0.15 Score=54.44 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 45 ~~Ge~~~ll--GpsGsGKSTLLr~ 66 (390)
T 3gd7_A 45 SPGQRVGLL--GRTGSGKSTLLSA 66 (390)
T ss_dssp CTTCEEEEE--ESTTSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCChHHHHHHH
Confidence 678888888 9999999999653
No 81
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.90 E-value=0.15 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 27 PKGEVHALM--GPNGAGKSTLGKI 48 (250)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999663
No 82
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.87 E-value=0.17 Score=47.31 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.4
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|....+. |++||||||++.
T Consensus 8 ~~~~I~l~--G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLE--GVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEE--ESTTSSHHHHHH
T ss_pred CCcEEEEE--CCCCCCHHHHHH
Confidence 35666677 999999999986
No 83
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.85 E-value=0.17 Score=51.70 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.0
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+...++-+|+||||||||+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34556666999999999986
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.80 E-value=0.15 Score=52.57 Aligned_cols=21 Identities=29% Similarity=0.107 Sum_probs=16.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||+-
T Consensus 88 ~~g~ivgI~--G~sGsGKSTL~~ 108 (312)
T 3aez_A 88 PVPFIIGVA--GSVAVGKSTTAR 108 (312)
T ss_dssp CCCEEEEEE--CCTTSCHHHHHH
T ss_pred CCCEEEEEE--CCCCchHHHHHH
Confidence 456555555 999999999986
No 85
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.78 E-value=0.16 Score=46.63 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=15.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. |+|||||||++.
T Consensus 11 ~~~i~i~--G~~GsGKst~~~ 29 (180)
T 3iij_A 11 LPNILLT--GTPGVGKTTLGK 29 (180)
T ss_dssp CCCEEEE--CSTTSSHHHHHH
T ss_pred CCeEEEE--eCCCCCHHHHHH
Confidence 4556777 999999999987
No 86
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.72 E-value=0.16 Score=48.05 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=15.3
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
....+. |+|||||||++-+
T Consensus 6 ~~i~i~--G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITID--GPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEE--CCTTSSHHHHHHH
T ss_pred eEEEEE--CCCCCCHHHHHHH
Confidence 355566 9999999999874
No 87
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.64 E-value=0.18 Score=50.56 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 39 ~~Gei~~l~--G~NGsGKSTLlk 59 (256)
T 1vpl_A 39 EEGEIFGLI--GPNGAGKTTTLR 59 (256)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 578888888 999999999965
No 88
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.56 E-value=0.16 Score=48.01 Aligned_cols=38 Identities=29% Similarity=0.060 Sum_probs=22.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCCC-C--CCCeeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNPT-L--PGYKVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p~-~--pgwk~~lIGDDi 319 (630)
+.|....+. |+||||||||+.+--. + .|.++.+++-|.
T Consensus 20 ~~~~~i~i~--G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGID--GLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEE--ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 345444444 9999999999752110 0 133566666453
No 89
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.54 E-value=0.19 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 31 ~~Ge~~~li--G~nGsGKSTLl~ 51 (266)
T 2yz2_A 31 NEGECLLVA--GNTGSGKSTLLQ 51 (266)
T ss_dssp CTTCEEEEE--CSTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 679888888 999999999965
No 90
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.54 E-value=0.14 Score=48.69 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |++|||||||++
T Consensus 21 ~~G~~~~i~--G~~GsGKTtl~~ 41 (247)
T 2dr3_A 21 PERNVVLLS--GGPGTGKTIFSQ 41 (247)
T ss_dssp ETTCEEEEE--ECTTSSHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999976
No 91
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.54 E-value=0.14 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ ||+|||||||++
T Consensus 28 ~~G~i~~i~--G~~GsGKTtl~~ 48 (279)
T 1nlf_A 28 VAGTVGALV--SPGGAGKSMLAL 48 (279)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred cCCCEEEEE--cCCCCCHHHHHH
Confidence 679999998 999999999987
No 92
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.53 E-value=0.2 Score=47.01 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=17.2
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.+...++. ||+|||||||+.
T Consensus 51 ~~~~~ll~--G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLW--GPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEE--CSTTSSHHHHHH
T ss_pred CCCeEEEE--CCCCCCHHHHHH
Confidence 45678888 999999999986
No 93
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.47 E-value=0.19 Score=51.67 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCCEEEEEeEcCCccchhhhcccC----CCCCCCeeEEeeccE
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGDDI 319 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~~----p~~pgwk~~lIGDDi 319 (630)
.|+...+. ||||||||||..+- ++. +-++.+.|-|+
T Consensus 101 ~g~vi~lv--G~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVV--GVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEE--CSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCC
T ss_pred CCeEEEEE--CCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecC
Confidence 46666666 99999999987621 112 23666666554
No 94
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.43 E-value=0.18 Score=45.60 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=13.1
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++||||||+|.
T Consensus 5 I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEecCCCCCHHHHHH
Confidence 3344999999999986
No 95
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.43 E-value=0.19 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=17.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.+...+++ |++||||||++.+
T Consensus 8 ~~~~~I~l~--G~~GsGKSTv~~~ 29 (184)
T 1y63_A 8 PKGINILIT--GTPGTGKTSMAEM 29 (184)
T ss_dssp CSSCEEEEE--CSTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 456677777 9999999999863
No 96
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.36 E-value=0.16 Score=51.51 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 45 ~~Ge~~~li--G~NGsGKSTLlk 65 (279)
T 2ihy_A 45 AKGDKWILY--GLNGAGKTTLLN 65 (279)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 568888888 999999999965
No 97
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.34 E-value=0.17 Score=49.34 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=16.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|...-+. ||||||||||+-+
T Consensus 23 ~~g~iigI~--G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 23 MRPFLIGVS--GGTASGKSTVCEK 44 (245)
T ss_dssp CCSEEEEEE--CSTTSSHHHHHHH
T ss_pred CCCEEEEEE--CCCCCCHHHHHHH
Confidence 556544445 9999999999863
No 98
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.30 E-value=0.19 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.006 Sum_probs=16.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|...-|. |+||||||||+-+
T Consensus 18 ~~g~~i~i~--G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 18 TQPFTVLIE--GNIGSGKTTYLNH 39 (230)
T ss_dssp CCCEEEEEE--CSTTSCHHHHHHT
T ss_pred CCceEEEEE--CCCCCCHHHHHHH
Confidence 456555555 9999999999864
No 99
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.26 E-value=0.15 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 33 ~~Ge~~~ii--G~NGsGKSTLlk~ 54 (214)
T 1sgw_A 33 EKGNVVNFH--GPNGIGKTTLLKT 54 (214)
T ss_dssp ETTCCEEEE--CCTTSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999653
No 100
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.19 E-value=0.18 Score=51.16 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=13.5
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.+.-+||||||||||+.
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 33344999999999987
No 101
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.06 E-value=0.2 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|....+. ||||||||||+-+
T Consensus 25 ~~g~~I~I~--G~~GsGKSTl~k~ 46 (252)
T 4e22_A 25 AIAPVITVD--GPSGAGKGTLCKA 46 (252)
T ss_dssp TTSCEEEEE--CCTTSSHHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 456666666 9999999999763
No 102
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.98 E-value=0.19 Score=50.50 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=25.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc-----CCCCCCCeeEEeeccEE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML-----NPTLPGYKVECVGDDIA 320 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~-----~p~~pgwk~~lIGDDia 320 (630)
+.|+...+. ||||||||||..+ .|+..| ++.+.||++.
T Consensus 23 ~~g~~v~i~--Gp~GsGKSTll~~l~g~~~~~~~G-~I~~~g~~i~ 65 (261)
T 2eyu_A 23 RKMGLILVT--GPTGSGKSTTIASMIDYINQTKSY-HIITIEDPIE 65 (261)
T ss_dssp CSSEEEEEE--CSTTCSHHHHHHHHHHHHHHHCCC-EEEEEESSCC
T ss_pred CCCCEEEEE--CCCCccHHHHHHHHHHhCCCCCCC-EEEEcCCcce
Confidence 557777777 9999999998642 221134 5666777654
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.95 E-value=0.2 Score=49.95 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |+||||||||+.
T Consensus 33 ~~G~~~~i~--G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVT--SGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEE--ESTTSSHHHHHH
T ss_pred CCCeEEEEE--eCCCCCHHHHHH
Confidence 679888888 999999999987
No 104
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.90 E-value=0.2 Score=48.61 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=17.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 20 ~~Ge~~~li--G~nGsGKSTLl~ 40 (208)
T 3b85_A 20 DTNTIVFGL--GPAGSGKTYLAM 40 (208)
T ss_dssp HHCSEEEEE--CCTTSSTTHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 458887777 999999999965
No 105
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.85 E-value=0.19 Score=46.45 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=16.7
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
++...++-.|++||||||++.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHH
Confidence 3445555569999999999874
No 106
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.77 E-value=0.17 Score=47.36 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.7
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
....+. |+|||||||||-
T Consensus 19 ~~I~l~--G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVM--GVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEE--CSTTSCHHHHHH
T ss_pred eEEEEE--CCCCCCHHHHHH
Confidence 345666 999999999986
No 107
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.64 E-value=0.19 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 24 ~~Ge~~~li--G~NGsGKSTLlk~ 45 (249)
T 2qi9_C 24 RAGEILHLV--GPNGAGKSTLLAR 45 (249)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHHH
Confidence 568888888 9999999999653
No 108
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.55 E-value=0.2 Score=50.08 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~ 49 (253)
T 2nq2_C 29 NKGDILAVL--GQNGCGKSTLLD 49 (253)
T ss_dssp ETTCEEEEE--CCSSSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 109
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.53 E-value=0.24 Score=44.22 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=15.5
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. ||+|||||+|+.
T Consensus 43 ~~~~ll~--G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLI--GEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEE--CCTTSCHHHHHH
T ss_pred CCceEEE--CCCCCCHHHHHH
Confidence 3456777 999999999975
No 110
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.52 E-value=0.21 Score=44.78 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
....++. ||+|||||+|+.
T Consensus 43 ~~~vll~--G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILL--GDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEE--SCGGGCHHHHHH
T ss_pred CCceEEE--CCCCCCHHHHHH
Confidence 4456777 999999999975
No 111
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.47 E-value=0.22 Score=50.91 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||.-
T Consensus 62 ~~Ge~~~i~--G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVA--GSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEE--ESTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 679888888 999999999965
No 112
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.41 E-value=0.21 Score=49.52 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=16.6
Q ss_pred cCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 278 TNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 278 ~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
.-+.| .++. ||||||||||+.
T Consensus 71 ~~~~g--vll~--Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 71 RIPKG--VLLV--GPPGVGKTHLAR 91 (278)
T ss_dssp CCCCE--EEEE--CCTTSSHHHHHH
T ss_pred CCCCe--EEEE--CCCcChHHHHHH
Confidence 33556 6677 999999999976
No 113
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.40 E-value=0.18 Score=46.24 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=15.6
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|....+. |++||||||++.+
T Consensus 4 g~~I~l~--G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFL--GPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEE--CCTTSCHHHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHHH
Confidence 4455566 9999999999873
No 114
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.33 E-value=0.2 Score=47.62 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...++ |++|||||+|++
T Consensus 28 ~~G~l~~i~--G~pG~GKT~l~l 48 (251)
T 2zts_A 28 PEGTTVLLT--GGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCeEEEEE--eCCCCCHHHHHH
Confidence 678889998 999999999987
No 115
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.27 E-value=0.21 Score=45.58 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=11.8
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
+...++. |++||||||+|..
T Consensus 5 ~~~I~l~--G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWIN--GPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEE--CCC----CHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHHH
Confidence 4455666 9999999999873
No 116
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.22 E-value=0.22 Score=45.41 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=12.5
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
+-.|+|||||||++.
T Consensus 5 ~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 5 IVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEECTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 334999999999986
No 117
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.14 E-value=0.21 Score=48.65 Aligned_cols=16 Identities=38% Similarity=0.376 Sum_probs=14.3
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.++. ||||||||||+.
T Consensus 48 vll~--G~~GtGKT~la~ 63 (257)
T 1lv7_A 48 VLMV--GPPGTGKTLLAK 63 (257)
T ss_dssp EEEE--CCTTSCHHHHHH
T ss_pred EEEE--CcCCCCHHHHHH
Confidence 6777 999999999986
No 118
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.13 E-value=0.19 Score=53.83 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+.+.++ ||||||||||++
T Consensus 176 ~~Gei~~I~--G~sGsGKTTLl~ 196 (400)
T 3lda_A 176 ETGSITELF--GEFRTGKSQLCH 196 (400)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--cCCCCChHHHHH
Confidence 568899999 999999999987
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.00 E-value=0.25 Score=48.01 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=15.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
++...+. ||||||||||+-
T Consensus 27 ~~~i~l~--G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVIL--GPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEE--CCTTSSHHHHHH
T ss_pred CcEEEEE--CCCCCCHHHHHH
Confidence 4566666 999999999975
No 120
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.85 E-value=0.22 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 78 ~~Ge~vaiv--G~sGsGKSTLl~l 99 (306)
T 3nh6_A 78 MPGQTLALV--GPSGAGKSTILRL 99 (306)
T ss_dssp CTTCEEEEE--SSSCHHHHHHHHH
T ss_pred cCCCEEEEE--CCCCchHHHHHHH
Confidence 679888888 9999999999764
No 121
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.85 E-value=0.25 Score=45.61 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=23.0
Q ss_pred CCCEEEEEeEcCCccchhhhcccCC-C--CCCCeeEEe-eccE
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECV-GDDI 319 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~~p-~--~pgwk~~lI-GDDi 319 (630)
.|....+. |++||||||++..-. . ..|+++.++ +|++
T Consensus 12 ~~~~i~l~--G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLT--GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEE--CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEE--cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 46556666 999999999986321 0 124455555 4444
No 122
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.62 E-value=0.25 Score=45.87 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=14.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|....|. |++||||||+|.
T Consensus 4 ~~~I~i~--G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFE--GIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEE--CCTTSSHHHHHH
T ss_pred CeEEEEE--cCCCCCHHHHHH
Confidence 4345555 999999999986
No 123
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.47 E-value=0.26 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=17.6
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|....+. |++||||||++.+
T Consensus 23 ~~~~~i~~~--G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 23 QRGLTIWLT--GLSASGKSTLAVE 44 (211)
T ss_dssp SSCEEEEEE--CSTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 456666677 9999999999873
No 124
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.47 E-value=0.28 Score=49.44 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+ |+..-+. ||||||||||.-
T Consensus 29 ~-Ge~~~i~--G~NGsGKSTLlk 48 (263)
T 2pjz_A 29 N-GEKVIIL--GPNGSGKTTLLR 48 (263)
T ss_dssp C-SSEEEEE--CCTTSSHHHHHH
T ss_pred C-CEEEEEE--CCCCCCHHHHHH
Confidence 6 8888888 999999999965
No 125
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.47 E-value=0.28 Score=52.17 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 52 ~~Gei~~Ii--GpnGaGKSTLlr 72 (366)
T 3tui_C 52 PAGQIYGVI--GASGAGKSTLIR 72 (366)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred cCCCEEEEE--cCCCchHHHHHH
Confidence 679888888 999999999954
No 126
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.36 E-value=0.25 Score=47.27 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.3
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|+...+. ||||||||||..
T Consensus 1 G~~i~i~--G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLT--GPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEE--SCCSSCHHHHHH
T ss_pred CCEEEEE--CCCCChHHHHHH
Confidence 4556666 999999999965
No 127
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=86.28 E-value=0.27 Score=46.39 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.5
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.||||||||||..
T Consensus 6 ~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 6 TGEPGVGKTTLVK 18 (178)
T ss_dssp ECCTTSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3999999999965
No 128
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.01 E-value=0.31 Score=45.16 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=15.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|....+. |++||||||++-
T Consensus 4 ~~~I~l~--G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFE--GLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEE--CCTTSSHHHHHH
T ss_pred CcEEEEE--cCCCCCHHHHHH
Confidence 5556666 999999999986
No 129
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.01 E-value=0.31 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.5
Q ss_pred CCCEEEEEeEcCCccchhhhccc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.++..++. ||+|||||+||..
T Consensus 48 ~~~~vLL~--Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFY--GPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEE--CSSSSSHHHHHHH
T ss_pred CCceEEEE--CCCCcCHHHHHHH
Confidence 35668888 9999999999863
No 130
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.94 E-value=0.26 Score=48.49 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=15.2
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. |+|||||||+|.
T Consensus 32 ~~~i~l~--G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLG--GQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEE--SCGGGTTHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 4455555 999999999987
No 131
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.78 E-value=0.32 Score=44.74 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=15.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+....+. |++||||||+|.
T Consensus 9 ~~~I~l~--G~~GsGKsT~~~ 27 (196)
T 2c95_A 9 TNIIFVV--GGPGSGKGTQCE 27 (196)
T ss_dssp SCEEEEE--ECTTSSHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 4556666 999999999986
No 132
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.68 E-value=0.28 Score=49.99 Aligned_cols=20 Identities=30% Similarity=0.037 Sum_probs=14.9
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|...-+ .||||||||||+.
T Consensus 79 ~g~iigI--~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 79 IPYIISI--AGSVAVGKSTTAR 98 (308)
T ss_dssp CCEEEEE--EECTTSSHHHHHH
T ss_pred CCEEEEE--ECCCCCCHHHHHH
Confidence 3544444 4999999999985
No 133
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.55 E-value=0.27 Score=44.98 Aligned_cols=17 Identities=24% Similarity=0.051 Sum_probs=14.0
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
..+. |+|||||||+|-.
T Consensus 7 i~i~--G~~GsGKsTla~~ 23 (175)
T 1via_A 7 IVFI--GFMGSGKSTLARA 23 (175)
T ss_dssp EEEE--CCTTSCHHHHHHH
T ss_pred EEEE--cCCCCCHHHHHHH
Confidence 5555 9999999999873
No 134
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=85.42 E-value=0.3 Score=45.00 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=12.2
Q ss_pred EcCCccchhhhccc
Q psy13077 290 AFPSACGKTNLAML 303 (630)
Q Consensus 290 afpSg~GKTtLam~ 303 (630)
.|++||||||++.+
T Consensus 6 ~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 6 FGTVGAGKSTISAE 19 (205)
T ss_dssp ECCTTSCHHHHHHH
T ss_pred ECCCccCHHHHHHH
Confidence 49999999999873
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.42 E-value=0.36 Score=47.42 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=16.6
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.-.++. ||+|||||+||..
T Consensus 51 ~~~~ll~--G~~GtGKT~la~~ 70 (285)
T 3h4m_A 51 PKGILLY--GPPGTGKTLLAKA 70 (285)
T ss_dssp CSEEEEE--SSSSSSHHHHHHH
T ss_pred CCeEEEE--CCCCCcHHHHHHH
Confidence 3458888 9999999999873
No 136
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.26 E-value=0.37 Score=47.75 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=16.4
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. ||+|||||+||.
T Consensus 54 ~~~vll~--Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLF--GPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEE--SSSSSCHHHHHH
T ss_pred CCeEEEE--CcCCCCHHHHHH
Confidence 4567888 999999999986
No 137
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=85.20 E-value=0.34 Score=45.42 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.5
Q ss_pred EEeEcCCccchhhhccc
Q psy13077 287 IAAAFPSACGKTNLAML 303 (630)
Q Consensus 287 f~~afpSg~GKTtLam~ 303 (630)
++-.|++||||||++-+
T Consensus 5 i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33449999999999874
No 138
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.14 E-value=0.3 Score=48.85 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.1
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|+...+. |+|||||||++-+
T Consensus 48 g~~i~l~--G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 48 GRSMYLV--GMMGSGKTTVGKI 67 (250)
T ss_dssp TCCEEEE--CSTTSCHHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHHH
Confidence 6778888 9999999999763
No 139
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.13 E-value=0.33 Score=48.04 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.3
Q ss_pred eEcCCccchhhhcc
Q psy13077 289 AAFPSACGKTNLAM 302 (630)
Q Consensus 289 ~afpSg~GKTtLam 302 (630)
-.|||||||||||.
T Consensus 6 I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 6 IYGPTCSGKTDMAI 19 (253)
T ss_dssp EECCTTSSHHHHHH
T ss_pred EECCCCcCHHHHHH
Confidence 34999999999987
No 140
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.06 E-value=0.36 Score=45.03 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.6
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
...++. ||+|||||+|+.
T Consensus 55 ~~~~l~--G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLH--GSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEE--CSTTSSHHHHHH
T ss_pred CeEEEE--CCCCCCHHHHHH
Confidence 567788 999999999986
No 141
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.01 E-value=0.25 Score=51.62 Aligned_cols=21 Identities=24% Similarity=0.074 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+.+.++ ||||||||||++
T Consensus 129 ~~G~i~~I~--G~~GsGKTTL~~ 149 (349)
T 1pzn_A 129 ETQAITEVF--GEFGSGKTQLAH 149 (349)
T ss_dssp ESSEEEEEE--ESTTSSHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999987
No 142
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.93 E-value=0.21 Score=46.75 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=12.9
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|+||||||||+.
T Consensus 3 I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 3334999999999986
No 143
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.92 E-value=0.37 Score=47.76 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+. +..-+. ||||||||||.-
T Consensus 23 ~~-e~~~li--G~nGsGKSTLl~ 42 (240)
T 2onk_A 23 GR-DYCVLL--GPTGAGKSVFLE 42 (240)
T ss_dssp CS-SEEEEE--CCTTSSHHHHHH
T ss_pred CC-EEEEEE--CCCCCCHHHHHH
Confidence 44 666666 999999999965
No 144
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.65 E-value=0.36 Score=50.26 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=25.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcccC----CCCCCCeeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~----p~~pgwk~~lIGDDi 319 (630)
+.|+...+. ||||||||||...- .+. +.++.++|-|+
T Consensus 127 ~~g~vi~lv--G~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFV--GFNGSGKTTTIAKLANWLKNH-GFSVVIAASDT 167 (328)
T ss_dssp CSSEEEEEE--CCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecc
Confidence 457666666 99999999986521 112 34788888775
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.59 E-value=0.41 Score=46.06 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.4
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
.-.++. ||+|||||+||.
T Consensus 40 ~~vll~--G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLL--GPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEE--SCTTSSHHHHHH
T ss_pred ceEEEE--CCCCCCHHHHHH
Confidence 347788 999999999986
No 146
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=84.38 E-value=0.35 Score=49.58 Aligned_cols=21 Identities=19% Similarity=-0.045 Sum_probs=17.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 98 ~~g~vi~lv--G~nGsGKTTll~ 118 (302)
T 3b9q_A 98 RKPAVIMIV--GVNGGGKTTSLG 118 (302)
T ss_dssp SSCEEEEEE--CCTTSCHHHHHH
T ss_pred CCCcEEEEE--cCCCCCHHHHHH
Confidence 457777777 999999999976
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.34 E-value=0.32 Score=49.92 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.0
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
...|. ||+|||||||+.+
T Consensus 53 ~~ll~--Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 53 HVLLA--GPPGLGKTTLAHI 70 (334)
T ss_dssp CEEEE--SSTTSSHHHHHHH
T ss_pred eEEEE--CCCCCcHHHHHHH
Confidence 46666 9999999999874
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.21 E-value=0.38 Score=48.41 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..+...++. ||+|||||||+.
T Consensus 43 ~~~~~vli~--G~~G~GKTtl~~ 63 (386)
T 2qby_A 43 EKPNNIFIY--GLTGTGKTAVVK 63 (386)
T ss_dssp CCCCCEEEE--ECTTSSHHHHHH
T ss_pred CCCCeEEEE--CCCCCCHHHHHH
Confidence 445678888 999999999976
No 149
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.12 E-value=0.38 Score=45.35 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=31.8
Q ss_pred hhHhhhcCCHHHHHHHHHHHHHHHHHh------hCCCccHHHHHHHHHHHHHh
Q psy13077 582 DLEELFSFDKSFWEQEVQDLQRYFNEQ------LGADLPTAIQAEIDALKQRI 628 (630)
Q Consensus 582 ~~~~~~~~d~~~w~~e~~~l~~~f~~~------~~~~lP~ei~~~l~~~~~rl 628 (630)
+.++.+....+.|.++...+.++|.++ -++.-++++.+++.+..+++
T Consensus 163 d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3fb4_A 163 DKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215 (216)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 445566666788888999999998752 13445677777777665543
No 150
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.05 E-value=0.39 Score=46.02 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.2
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+....|. |++||||||+|-
T Consensus 7 ~~~I~l~--G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIM--GAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEE--ECTTSSHHHHHH
T ss_pred CcEEEEE--CCCCCCHHHHHH
Confidence 4455666 999999999986
No 151
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.03 E-value=0.33 Score=50.37 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=23.1
Q ss_pred eecccccccCHHHHHHHHHHhhhcCCCcEEEeCCC
Q psy13077 21 LKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGS 55 (630)
Q Consensus 21 ~~~g~~~~~~~~~~~~v~~~~~l~~p~~I~~~~gs 55 (630)
++-|.|.-++-.=+.-+++++++| +.|++.-++
T Consensus 6 i~~GtFdP~h~GHl~~~~~a~~~~--d~v~v~~~~ 38 (365)
T 1lw7_A 6 VIFGKFYPVHTGHINMIYEAFSKV--DELHVIVCS 38 (365)
T ss_dssp EEEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEE
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEECC
Confidence 455778877777777788888877 666654443
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.98 E-value=0.39 Score=44.22 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=15.1
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+....+. |++||||||+|.
T Consensus 12 ~~~I~l~--G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFII--GGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEE--ECTTSSHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 3455566 999999999986
No 153
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.98 E-value=0.38 Score=44.20 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=13.1
Q ss_pred EeEcCCccchhhhccc
Q psy13077 288 AAAFPSACGKTNLAML 303 (630)
Q Consensus 288 ~~afpSg~GKTtLam~ 303 (630)
+-.|++||||||++.+
T Consensus 4 ~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3349999999999873
No 154
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.93 E-value=0.55 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 367 ~~G~~~~iv--G~sGsGKSTll~~ 388 (582)
T 3b5x_A 367 PQGKTVALV--GRSGSGKSTIANL 388 (582)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 679888888 9999999999763
No 155
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.92 E-value=0.35 Score=46.49 Aligned_cols=16 Identities=38% Similarity=0.411 Sum_probs=13.0
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+. ||||+|||||.-
T Consensus 4 IVi~--GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 4 IVIS--GPSGTGKSTLLK 19 (186)
T ss_dssp EEEE--CCTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4455 999999999964
No 156
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.85 E-value=0.36 Score=43.55 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+. |++||||||+|.
T Consensus 5 I~l~--G~~GsGKsT~a~ 20 (173)
T 1e6c_A 5 IFMV--GARGCGMTTVGR 20 (173)
T ss_dssp EEEE--SCTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4555 999999999986
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.85 E-value=0.38 Score=43.85 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=12.9
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++||||||+|.
T Consensus 6 I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3334999999999986
No 158
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.83 E-value=0.3 Score=46.11 Aligned_cols=15 Identities=33% Similarity=0.211 Sum_probs=12.4
Q ss_pred eEcCCccchhhhccc
Q psy13077 289 AAFPSACGKTNLAML 303 (630)
Q Consensus 289 ~afpSg~GKTtLam~ 303 (630)
-.|+||||||||+.+
T Consensus 7 IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 7 IVGTSDSGKTTLITR 21 (171)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 348999999999863
No 159
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.67 E-value=0.46 Score=47.09 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...+|. ||+|||||+||.
T Consensus 67 ~~~vll~--G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFT--GNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEE--ECTTSSHHHHHH
T ss_pred CceEEEE--CCCCCCHHHHHH
Confidence 4457777 999999999984
No 160
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.63 E-value=0.39 Score=48.49 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..+...++. ||+|||||||+.
T Consensus 42 ~~~~~vll~--G~~G~GKT~l~~ 62 (387)
T 2v1u_A 42 EKPSNALLY--GLTGTGKTAVAR 62 (387)
T ss_dssp CCCCCEEEC--BCTTSSHHHHHH
T ss_pred CCCCcEEEE--CCCCCCHHHHHH
Confidence 345567888 999999999986
No 161
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.60 E-value=0.23 Score=48.39 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=17.2
Q ss_pred cccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 276 GITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 276 gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
++..+.| .++. ||+|||||+||.
T Consensus 40 ~~~~~~~--vll~--G~~GtGKT~la~ 62 (268)
T 2r62_A 40 GAKIPKG--VLLV--GPPGTGKTLLAK 62 (268)
T ss_dssp SCCCCSC--CCCB--CSSCSSHHHHHH
T ss_pred CCCCCce--EEEE--CCCCCcHHHHHH
Confidence 3333445 6677 999999999986
No 162
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.47 E-value=0.35 Score=52.91 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||+.+
T Consensus 37 ~~Ge~~~l~--G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 37 PIGRSTLVS--GTSGTGKTLFSIQ 58 (525)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHH
T ss_pred CCCeEEEEE--cCCCCCHHHHHHH
Confidence 679999888 9999999999874
No 163
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.45 E-value=0.4 Score=45.63 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=15.1
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...+|. |++||||||++-
T Consensus 5 ~~~I~l~--G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMIS--GAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEE--ESTTSSHHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 3445666 999999999986
No 164
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.34 E-value=0.39 Score=44.09 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=13.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..++ |++||||||+|.
T Consensus 5 I~l~--G~~GsGKsT~a~ 20 (184)
T 2iyv_A 5 AVLV--GLPGSGKSTIGR 20 (184)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 5566 999999999986
No 165
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.29 E-value=0.45 Score=51.32 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=20.9
Q ss_pred hccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 274 ILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 274 i~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
-+|+.-|.| .++. ||+|||||.||-.
T Consensus 176 ~~gi~~prG--vLL~--GPPGTGKTllAkA 201 (405)
T 4b4t_J 176 SLGIAQPKG--VILY--GPPGTGKTLLARA 201 (405)
T ss_dssp HHTCCCCCC--EEEE--SCSSSSHHHHHHH
T ss_pred hCCCCCCCc--eEEe--CCCCCCHHHHHHH
Confidence 346666777 8888 9999999999873
No 166
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.21 E-value=0.42 Score=51.69 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-++ ||||||||||..
T Consensus 155 ~~Gq~~~Iv--G~sGsGKSTLl~ 175 (438)
T 2dpy_A 155 GRGQRMGLF--AGSGVGKSVLLG 175 (438)
T ss_dssp BTTCEEEEE--ECTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 578899899 999999999965
No 167
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.16 E-value=0.35 Score=49.11 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=11.1
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-+|+|||||||+|-
T Consensus 7 iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKH 23 (290)
T ss_dssp EEEEESCC---CCTHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45555999999999986
No 168
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.07 E-value=0.41 Score=48.33 Aligned_cols=18 Identities=22% Similarity=-0.132 Sum_probs=15.2
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
-.++. ||+|||||+||..
T Consensus 38 ~lLl~--GppGtGKT~la~a 55 (293)
T 3t15_A 38 ILGIW--GGKGQGKSFQCEL 55 (293)
T ss_dssp EEEEE--ECTTSCHHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHHH
Confidence 46777 9999999999873
No 169
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.87 E-value=0.45 Score=44.88 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=32.7
Q ss_pred hhHhhhcCCHHHHHHHHHHHHHHHHHh------hCCCccHHHHHHHHHHHHHh
Q psy13077 582 DLEELFSFDKSFWEQEVQDLQRYFNEQ------LGADLPTAIQAEIDALKQRI 628 (630)
Q Consensus 582 ~~~~~~~~d~~~w~~e~~~l~~~f~~~------~~~~lP~ei~~~l~~~~~rl 628 (630)
+.++.+...-+.|.++...+.++|.++ -++.-++++.+++.++.+++
T Consensus 163 d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 163 DNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215 (216)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 345555666688999999999999752 13455678888777766554
No 170
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.84 E-value=0.43 Score=48.13 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.4
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. ||+|||||||+.
T Consensus 37 ~~~lll~--G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIY--GSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEE--CSSSSSHHHHHH
T ss_pred CCeEEEE--CCCCCcHHHHHH
Confidence 4568888 999999999986
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=82.79 E-value=0.44 Score=43.53 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=14.2
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.++. ||+|||||+|+.
T Consensus 41 ~ll~--G~~G~GKT~l~~ 56 (226)
T 2chg_A 41 LLFS--GPPGTGKTATAI 56 (226)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 6777 999999999986
No 172
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.75 E-value=0.55 Score=43.74 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=13.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..++-.|++||||||+|.
T Consensus 16 ~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 344444999999999984
No 173
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.65 E-value=0.52 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.4
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 365 ~~G~~~~iv--G~sGsGKSTll~~ 386 (578)
T 4a82_A 365 EKGETVAFV--GMSGGGKSTLINL 386 (578)
T ss_dssp CTTCEEEEE--CSTTSSHHHHHTT
T ss_pred CCCCEEEEE--CCCCChHHHHHHH
Confidence 679888888 9999999999764
No 174
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=82.62 E-value=0.52 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||+.
T Consensus 167 ~~~~~i~l~--G~~GsGKSTl~~ 187 (377)
T 1svm_A 167 PKKRYWLFK--GPIDSGKTTLAA 187 (377)
T ss_dssp TTCCEEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 667777777 999999999987
No 175
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.61 E-value=0.48 Score=42.58 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.3
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+. |++||||||+|.
T Consensus 3 I~l~--G~~GsGKsT~a~ 18 (168)
T 2pt5_A 3 IYLI--GFMCSGKSTVGS 18 (168)
T ss_dssp EEEE--SCTTSCHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 3455 999999999986
No 176
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=82.51 E-value=0.6 Score=43.59 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.0
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+....+. |++||||||+|-
T Consensus 20 ~~~I~l~--G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLL--GPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEE--CCTTSSHHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 4445555 999999999987
No 177
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.49 E-value=0.44 Score=51.76 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=19.8
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.|+.-|.| .++. ||+|||||.||..
T Consensus 210 ~g~~~prG--vLLy--GPPGTGKTllAkA 234 (434)
T 4b4t_M 210 MGIRAPKG--ALMY--GPPGTGKTLLARA 234 (434)
T ss_dssp HCCCCCCE--EEEE--SCTTSSHHHHHHH
T ss_pred CCCCCCCe--eEEE--CcCCCCHHHHHHH
Confidence 35655655 8888 9999999999873
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.41 E-value=0.52 Score=42.20 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=16.4
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.-.++. |++|||||+||-.
T Consensus 24 ~~~vll~--G~~GtGKt~lA~~ 43 (145)
T 3n70_A 24 DIAVWLY--GAPGTGRMTGARY 43 (145)
T ss_dssp CSCEEEE--SSTTSSHHHHHHH
T ss_pred CCCEEEE--CCCCCCHHHHHHH
Confidence 3457788 9999999999863
No 179
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.38 E-value=0.55 Score=50.54 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=26.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc----CCCCCCCeeEEeeccEE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGDDIA 320 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~----~p~~pgwk~~lIGDDia 320 (630)
..|....+. ||+|||||||..+ .++..| ++.++||++-
T Consensus 165 ~~ggii~I~--GpnGSGKTTlL~allg~l~~~~g-~I~~~ed~ie 206 (418)
T 1p9r_A 165 RPHGIILVT--GPTGSGKSTTLYAGLQELNSSER-NILTVEDPIE 206 (418)
T ss_dssp SSSEEEEEE--CSTTSCHHHHHHHHHHHHCCTTS-CEEEEESSCC
T ss_pred hcCCeEEEE--CCCCCCHHHHHHHHHhhcCCCCC-EEEEecccch
Confidence 446566777 9999999997541 122344 6888898873
No 180
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.37 E-value=0.45 Score=44.38 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.5
Q ss_pred eEcCCccchhhhccc
Q psy13077 289 AAFPSACGKTNLAML 303 (630)
Q Consensus 289 ~afpSg~GKTtLam~ 303 (630)
-.|++||||||++-+
T Consensus 6 i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 6 LTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEECTTSSHHHHHHH
T ss_pred EECCCCcCHHHHHHH
Confidence 349999999999863
No 181
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.25 E-value=0.64 Score=42.78 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.7
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..++. ||+|||||||+.
T Consensus 47 ~~ll~--G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFS--GTRGVGKTSIAR 63 (250)
T ss_dssp EEEEE--CSTTSCHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 56777 999999999976
No 182
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=82.18 E-value=0.37 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=17.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 173 ~~G~~i~iv--G~sGsGKSTll~ 193 (361)
T 2gza_A 173 QLERVIVVA--GETGSGKTTLMK 193 (361)
T ss_dssp HTTCCEEEE--ESSSSCHHHHHH
T ss_pred hcCCEEEEE--CCCCCCHHHHHH
Confidence 468778888 999999999865
No 183
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.14 E-value=0.49 Score=48.11 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=16.7
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|+..+|. ||+|||||+||.
T Consensus 70 ~~~vLl~--GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIA--GQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEE--ESTTSSHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 5678888 999999999987
No 184
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.11 E-value=0.46 Score=51.49 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=19.8
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+|+.-|.| .++. ||+|||||+||-.
T Consensus 201 ~g~~~prG--iLL~--GPPGtGKT~lakA 225 (428)
T 4b4t_K 201 IGIDPPRG--VLLY--GPPGTGKTMLVKA 225 (428)
T ss_dssp HCCCCCCE--EEEE--SCTTTTHHHHHHH
T ss_pred CCCCCCce--EEEE--CCCCCCHHHHHHH
Confidence 35655655 8888 9999999999874
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.10 E-value=0.57 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |++|+|||||++
T Consensus 66 ~~G~l~li~--G~pG~GKTtl~l 86 (315)
T 3bh0_A 66 KRRNFVLIA--ARPSMGKTAFAL 86 (315)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHH
Confidence 679899998 999999999988
No 186
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.08 E-value=0.57 Score=44.48 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.3
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|....|. |++||||||+|.
T Consensus 4 ~~~I~l~--G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLI--GPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEE--CCTTSSHHHHHH
T ss_pred CcEEEEE--CCCCCCHHHHHH
Confidence 4455666 999999999987
No 187
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=82.00 E-value=0.47 Score=49.15 Aligned_cols=21 Identities=19% Similarity=-0.070 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...++ |++|||||||++
T Consensus 120 ~~G~i~~I~--G~~GsGKTtla~ 140 (343)
T 1v5w_A 120 ESMAITEAF--GEFRTGKTQLSH 140 (343)
T ss_dssp CSSEEEEEE--CCTTCTHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 678888888 999999999987
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.91 E-value=0.47 Score=46.60 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.1
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
...+|. ||+|||||+||.
T Consensus 65 ~~vLl~--G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLE--GPPHSGKTALAA 82 (272)
T ss_dssp EEEEEE--CSTTSSHHHHHH
T ss_pred eEEEEE--CCCCCcHHHHHH
Confidence 356666 999999999986
No 189
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.89 E-value=0.48 Score=51.53 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=19.8
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+|+.-|.| .++. ||+|||||.||..
T Consensus 210 ~g~~~prG--vLL~--GPPGtGKTllAkA 234 (437)
T 4b4t_L 210 VGIKPPKG--VLLY--GPPGTGKTLLAKA 234 (437)
T ss_dssp HCCCCCCE--EEEE--SCTTSSHHHHHHH
T ss_pred CCCCCCCe--EEEE--CCCCCcHHHHHHH
Confidence 35555666 8888 9999999999873
No 190
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=81.85 E-value=0.53 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.3
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||.-+
T Consensus 367 ~~G~~~~iv--G~sGsGKSTLl~~ 388 (582)
T 3b60_A 367 PAGKTVALV--GRSGSGKSTIASL 388 (582)
T ss_dssp CTTCEEEEE--ECTTSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679888888 9999999999764
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.75 E-value=0.5 Score=48.18 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.4
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
.+|. ||+|||||||+.+
T Consensus 49 ~ll~--Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 49 LLFY--GPPGTGKTSTIVA 65 (340)
T ss_dssp EEEE--CSSSSSHHHHHHH
T ss_pred EEEE--CCCCCCHHHHHHH
Confidence 5666 9999999999873
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.69 E-value=0.54 Score=42.88 Aligned_cols=14 Identities=29% Similarity=0.083 Sum_probs=12.1
Q ss_pred EcCCccchhhhccc
Q psy13077 290 AFPSACGKTNLAML 303 (630)
Q Consensus 290 afpSg~GKTtLam~ 303 (630)
.|++||||||+|.+
T Consensus 6 ~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 6 EGIDGSGKTTQAKK 19 (195)
T ss_dssp ECSTTSCHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 39999999999863
No 193
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=81.61 E-value=0.56 Score=44.42 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.2
Q ss_pred EEEeEcCCccchhhhccc
Q psy13077 286 YIAAAFPSACGKTNLAML 303 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam~ 303 (630)
.++-.|+|||||||++-+
T Consensus 6 ~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 444459999999999873
No 194
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=81.35 E-value=0.39 Score=53.55 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...+. |+||||||||+-
T Consensus 367 ~~G~iI~Li--G~sGSGKSTLar 387 (552)
T 3cr8_A 367 RQGFTVFFT--GLSGAGKSTLAR 387 (552)
T ss_dssp GSCEEEEEE--ESSCHHHHHHHH
T ss_pred ccceEEEEE--CCCCChHHHHHH
Confidence 468788888 999999999975
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.32 E-value=0.44 Score=50.39 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...++ ||+|||||||+.
T Consensus 59 ~~G~i~~I~--GppGsGKSTLal 79 (356)
T 3hr8_A 59 PRGRIVEIF--GQESSGKTTLAL 79 (356)
T ss_dssp ETTEEEEEE--ESTTSSHHHHHH
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999987
No 196
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.30 E-value=0.58 Score=47.48 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=15.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..++. ||+|||||||+.
T Consensus 46 ~~li~--G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLL--GRPGTGKTVTLR 62 (389)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred eEEEE--CCCCCCHHHHHH
Confidence 67788 999999999975
No 197
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=81.20 E-value=0.59 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 368 ~~G~~~~iv--G~sGsGKSTLl~~ 389 (595)
T 2yl4_A 368 PSGSVTALV--GPSGSGKSTVLSL 389 (595)
T ss_dssp CTTCEEEEE--CCTTSSSTHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679888888 9999999999764
No 198
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=81.15 E-value=0.78 Score=42.47 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=13.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..++-.|++|||||||..
T Consensus 30 ~kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 344455999999999964
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=81.14 E-value=0.5 Score=48.38 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...++ |++|||||+|++
T Consensus 105 ~~G~i~~i~--G~~GsGKT~la~ 125 (324)
T 2z43_A 105 ETRTMTEFF--GEFGSGKTQLCH 125 (324)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHhHHHH
Confidence 668889998 999999999987
No 200
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.08 E-value=0.57 Score=49.16 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.1
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-+|||||||||||.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 44556999999999987
No 201
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=80.78 E-value=0.66 Score=49.04 Aligned_cols=21 Identities=19% Similarity=-0.045 Sum_probs=17.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 155 ~~g~vi~lv--G~nGsGKTTll~ 175 (359)
T 2og2_A 155 RKPAVIMIV--GVNGGGKTTSLG 175 (359)
T ss_dssp SSSEEEEEE--CCTTSCHHHHHH
T ss_pred CCCeEEEEE--cCCCChHHHHHH
Confidence 457777777 999999999976
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.74 E-value=0.72 Score=45.63 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=14.6
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..+|. ||+|||||+||-.
T Consensus 49 ~~ll~--G~~GtGKt~la~~ 66 (311)
T 4fcw_A 49 SFLFL--GPTGVGKTELAKT 66 (311)
T ss_dssp EEEEE--SCSSSSHHHHHHH
T ss_pred EEEEE--CCCCcCHHHHHHH
Confidence 45666 9999999999863
No 203
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.68 E-value=0.52 Score=49.29 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...++ |++|||||||++
T Consensus 59 ~~G~iv~I~--G~pGsGKTtLal 79 (349)
T 2zr9_A 59 PRGRVIEIY--GPESSGKTTVAL 79 (349)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999977
No 204
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=80.65 E-value=0.63 Score=42.33 Aligned_cols=16 Identities=13% Similarity=0.029 Sum_probs=12.9
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++||||||+|.
T Consensus 9 I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3334999999999986
No 205
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.56 E-value=0.64 Score=51.79 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 367 ~~Ge~~~iv--G~sGsGKSTll~~ 388 (587)
T 3qf4_A 367 KPGSLVAVL--GETGSGKSTLMNL 388 (587)
T ss_dssp CTTCEEEEE--CSSSSSHHHHHHT
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679888888 9999999999874
No 206
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.50 E-value=0.61 Score=46.05 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=13.9
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..+++ |++||||||+|.
T Consensus 6 lIvl~--G~pGSGKSTla~ 22 (260)
T 3a4m_A 6 LIILT--GLPGVGKSTFSK 22 (260)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred EEEEE--cCCCCCHHHHHH
Confidence 44555 999999999986
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=80.31 E-value=0.62 Score=49.06 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=25.8
Q ss_pred CCCCEEEEEeEcCCccchhhhccc-----CCCCCCCeeEEeeccEEE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML-----NPTLPGYKVECVGDDIAW 321 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~-----~p~~pgwk~~lIGDDiaW 321 (630)
+.|+...+. ||||||||||..+ .|+..| ++.++||++.|
T Consensus 134 ~~g~~i~iv--G~~GsGKTTll~~l~~~~~~~~~g-~I~~~e~~~e~ 177 (372)
T 2ewv_A 134 RKMGLILVT--GPTGSGKSTTIASMIDYINQTKSY-HIITIEDPIEY 177 (372)
T ss_dssp SSSEEEEEE--CSSSSSHHHHHHHHHHHHHHHSCC-EEEEEESSCCS
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHhhcCcCCCc-EEEEecccHhh
Confidence 457667777 9999999998642 121134 56677877643
No 208
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=80.27 E-value=0.7 Score=42.27 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
...+. |+||||||||.-
T Consensus 28 ~~~i~--G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIV--GANGSGKSNIGD 44 (182)
T ss_dssp EEEEE--ECTTSSHHHHHH
T ss_pred cEEEE--CCCCCCHHHHHH
Confidence 66677 999999999954
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.27 E-value=0.57 Score=41.93 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=16.7
Q ss_pred CEEEEEeEcCCccchhhhcccCC
Q psy13077 283 QKKYIAAAFPSACGKTNLAMLNP 305 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~~p 305 (630)
.-.++. |++|||||+||..-+
T Consensus 28 ~~vll~--G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLT--GEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEE--EETTCCHHHHHGGGC
T ss_pred CcEEEE--CCCCccHHHHHHHHH
Confidence 347777 999999999987433
No 210
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=80.18 E-value=0.67 Score=45.24 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=15.4
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|....|. |++||||||++.
T Consensus 25 ~g~~i~i~--G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFE--GPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEE--CCTTSCHHHHHH
T ss_pred CCeEEEEE--cCCCCCHHHHHH
Confidence 45445555 999999999976
No 211
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=80.12 E-value=0.71 Score=42.73 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=16.7
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|.+..+. |+||||||||.-
T Consensus 24 ~~~~~v~lv--G~~g~GKSTLl~ 44 (210)
T 1pui_A 24 DTGIEVAFA--GRSNAGKSSALN 44 (210)
T ss_dssp SCSEEEEEE--ECTTSSHHHHHT
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 457666666 999999999965
No 212
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.05 E-value=0.65 Score=43.97 Aligned_cols=14 Identities=43% Similarity=0.221 Sum_probs=11.6
Q ss_pred eEcCCccchhhhcc
Q psy13077 289 AAFPSACGKTNLAM 302 (630)
Q Consensus 289 ~afpSg~GKTtLam 302 (630)
-+|+||||||||..
T Consensus 11 i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 11 FAAWSGTGKTTLLK 24 (174)
T ss_dssp EECCTTSCHHHHHH
T ss_pred EEeCCCCCHHHHHH
Confidence 34999999999854
No 213
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=80.01 E-value=0.69 Score=47.00 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.0
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
.-.++. ||+|||||+||..
T Consensus 52 ~~vLl~--GppGtGKT~la~a 70 (322)
T 3eie_A 52 SGILLY--GPPGTGKSYLAKA 70 (322)
T ss_dssp CEEEEE--CSSSSCHHHHHHH
T ss_pred CeEEEE--CCCCCcHHHHHHH
Confidence 457888 9999999999863
No 214
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=79.95 E-value=0.44 Score=51.17 Aligned_cols=20 Identities=25% Similarity=0.090 Sum_probs=16.4
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
+...++. ||+|||||||+.+
T Consensus 130 ~~~lll~--Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 130 YNPLFIY--GGVGLGKTHLLQS 149 (440)
T ss_dssp SCCEEEE--CSSSSSHHHHHHH
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 3457788 9999999999863
No 215
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.86 E-value=0.72 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+..-+. ||||||||||..+
T Consensus 379 ~~G~~~~iv--G~sGsGKSTll~~ 400 (598)
T 3qf4_B 379 KPGQKVALV--GPTGSGKTTIVNL 400 (598)
T ss_dssp CTTCEEEEE--CCTTSSTTHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHHH
Confidence 679888888 9999999999753
No 216
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.76 E-value=0.72 Score=41.71 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=14.3
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
...+. |++||||||+|-+
T Consensus 9 ~i~l~--G~~GsGKSTva~~ 26 (168)
T 1zuh_A 9 HLVLI--GFMGSGKSSLAQE 26 (168)
T ss_dssp EEEEE--SCTTSSHHHHHHH
T ss_pred eEEEE--CCCCCCHHHHHHH
Confidence 34556 9999999999873
No 217
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=79.74 E-value=0.61 Score=50.79 Aligned_cols=22 Identities=36% Similarity=0.308 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|+...+. ||||||||||.-+
T Consensus 136 ~~Ge~v~Iv--GpnGsGKSTLlr~ 157 (460)
T 2npi_A 136 FEGPRVVIV--GGSQTGKTSLSRT 157 (460)
T ss_dssp SSCCCEEEE--ESTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 578888888 9999999999763
No 218
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.71 E-value=0.6 Score=44.51 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=15.5
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|....|. |++||||||+|-+
T Consensus 5 ~~~I~l~--G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILI--GAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEE--ECTTSSHHHHHHH
T ss_pred ceEEEEE--CCCCCCHHHHHHH
Confidence 4455566 9999999999873
No 219
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.67 E-value=0.69 Score=48.71 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=14.2
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-+|||||||||||.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 45556999999999986
No 220
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=79.62 E-value=0.65 Score=52.36 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||..
T Consensus 346 ~~Ge~vaIi--GpnGsGKSTLl~ 366 (670)
T 3ux8_A 346 PLGTFVAVT--GVSGSGKSTLVN 366 (670)
T ss_dssp ETTSEEEEE--CSTTSSHHHHHT
T ss_pred cCCCEEEEE--eeCCCCHHHHHH
Confidence 678888888 999999999974
No 221
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=79.61 E-value=0.65 Score=52.35 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLa 301 (630)
+.|+..-+. ||||||||||.
T Consensus 42 ~~Ge~~~li--GpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLT--GLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEE--CSTTSSHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHh
Confidence 679888888 99999999994
No 222
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=79.58 E-value=0.73 Score=47.19 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.8
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+-.++. ||+|||||+||.
T Consensus 46 ~~iLL~--GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLF--GPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEE--SSSSSCHHHHHH
T ss_pred ceEEEE--CCCCccHHHHHH
Confidence 458888 999999999986
No 223
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=79.56 E-value=0.72 Score=46.38 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
...++-.|+|||||||+|-
T Consensus 75 ~~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp CEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4455556999999999986
No 224
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=79.42 E-value=0.55 Score=47.66 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...++ |++|||||+|++
T Consensus 96 ~~g~i~~i~--G~~gsGKT~la~ 116 (322)
T 2i1q_A 96 ESQSVTEFA--GVFGSGKTQIMH 116 (322)
T ss_dssp ETTEEEEEE--ESTTSSHHHHHH
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999987
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.33 E-value=0.71 Score=48.55 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.1
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|....+. ||||||||||..
T Consensus 123 ~g~i~I~--GptGSGKTTlL~ 141 (356)
T 3jvv_A 123 RGLVLVT--GPTGSGKSTTLA 141 (356)
T ss_dssp SEEEEEE--CSTTSCHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 4466666 999999999965
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=79.33 E-value=0.72 Score=45.28 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.4
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
...+|. ||+|||||+||.
T Consensus 51 ~~vll~--G~~GtGKT~la~ 68 (310)
T 1ofh_A 51 KNILMI--GPTGVGKTEIAR 68 (310)
T ss_dssp CCEEEE--CCTTSSHHHHHH
T ss_pred ceEEEE--CCCCCCHHHHHH
Confidence 457777 999999999986
No 227
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.29 E-value=0.75 Score=47.35 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=16.2
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
+...+|. ||+|||||+||..
T Consensus 51 ~~~vll~--GppGtGKT~la~~ 70 (363)
T 3hws_A 51 KSNILLI--GPTGSGKTLLAET 70 (363)
T ss_dssp CCCEEEE--CCTTSSHHHHHHH
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 3457777 9999999999874
No 228
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.27 E-value=0.77 Score=46.65 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=16.1
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. ||+|||||+|+.
T Consensus 45 ~~~vll~--G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFL--GLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEE--ECTTSSHHHHHH
T ss_pred CCcEEEE--CCCCCCHHHHHH
Confidence 4567777 999999999986
No 229
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=79.21 E-value=0.71 Score=43.83 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=12.2
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
.-+|+||||||||+.
T Consensus 8 ~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 8 QVVGYKHSGKTTLME 22 (169)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 334899999999975
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=79.12 E-value=0.8 Score=50.72 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=23.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCCC-C--CCCeeEEeecc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNPT-L--PGYKVECVGDD 318 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p~-~--pgwk~~lIGDD 318 (630)
..|....+. |+||||||||..+--. + .+-++.++|-|
T Consensus 291 ~~GeVI~LV--GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 291 KAPFVILMV--GVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp CTTEEEEEE--CCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred cCCeEEEEE--CCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 457677777 9999999998752110 0 12356666544
No 231
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=79.04 E-value=0.84 Score=48.59 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=14.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
....+++ |||||||||+|.
T Consensus 258 ~~lIil~--G~pGSGKSTla~ 276 (416)
T 3zvl_A 258 PEVVVAV--GFPGAGKSTFIQ 276 (416)
T ss_dssp CCEEEEE--SCTTSSHHHHHH
T ss_pred CEEEEEE--CCCCCCHHHHHH
Confidence 3445555 999999999987
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.01 E-value=0.76 Score=50.77 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=17.4
Q ss_pred CCCEEEEEeEcCCccchhhhccc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.|....|. ||||||||||+.+
T Consensus 107 ~g~~vll~--Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLA--GPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEE--SSSSSSHHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 46677777 9999999999863
No 233
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.84 E-value=0.68 Score=46.81 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.9
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.+|. ||+|||||||+.
T Consensus 39 ~ll~--Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLY--GPNGTGKKTRCM 54 (354)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 6666 999999999985
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.66 E-value=0.83 Score=47.07 Aligned_cols=38 Identities=16% Similarity=-0.038 Sum_probs=24.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCCC---CCCCeeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p~---~pgwk~~lIGDDi 319 (630)
..|+...+. ||+|||||||+..-.. ..|.++.+++-|.
T Consensus 102 ~~~~vi~iv--G~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 102 EPPFVIMVV--GVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSCEEEEEE--CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCeEEEEE--cCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 346566666 9999999998762110 0255677777653
No 235
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=78.66 E-value=0.67 Score=48.84 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.| .+.++ ||+|||||||++
T Consensus 27 ~~G-iteI~--G~pGsGKTtL~L 46 (333)
T 3io5_A 27 QSG-LLILA--GPSKSFKSNFGL 46 (333)
T ss_dssp CSE-EEEEE--ESSSSSHHHHHH
T ss_pred cCC-eEEEE--CCCCCCHHHHHH
Confidence 668 77888 999999999977
No 236
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=78.61 E-value=0.77 Score=42.52 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=13.5
Q ss_pred EEeEcCCccchhhhccc
Q psy13077 287 IAAAFPSACGKTNLAML 303 (630)
Q Consensus 287 f~~afpSg~GKTtLam~ 303 (630)
++-.|+|||||||++-+
T Consensus 5 i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 5 VTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33449999999999873
No 237
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=78.59 E-value=0.91 Score=43.80 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.9
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|....+. |++||||||++-
T Consensus 15 ~~~~i~i~--G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAID--GPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEE--CSSCSSHHHHHH
T ss_pred CCcEEEEE--CCCCCCHHHHHH
Confidence 35556666 999999999975
No 238
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.44 E-value=0.81 Score=45.41 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=12.6
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
+-.|+|||||||+|.
T Consensus 6 ~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 6 LTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 334999999999986
No 239
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=78.22 E-value=0.77 Score=45.67 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=13.8
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
...+. ||||||||||+-
T Consensus 11 ~i~i~--G~~GsGKsTla~ 27 (233)
T 3r20_A 11 VVAVD--GPAGTGKSSVSR 27 (233)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 34444 999999999987
No 240
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.22 E-value=0.64 Score=51.08 Aligned_cols=25 Identities=40% Similarity=0.503 Sum_probs=20.0
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+|+.-|.| .++. ||+|||||.||-.
T Consensus 238 ~Gi~pprG--ILLy--GPPGTGKTlLAkA 262 (467)
T 4b4t_H 238 LGIDPPKG--ILLY--GPPGTGKTLCARA 262 (467)
T ss_dssp HTCCCCSE--EEEC--SCTTSSHHHHHHH
T ss_pred CCCCCCCc--eEee--CCCCCcHHHHHHH
Confidence 46656666 8888 9999999999863
No 241
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.20 E-value=0.83 Score=47.85 Aligned_cols=21 Identities=33% Similarity=0.211 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|++.-++ ||||||||||..
T Consensus 69 ~~Gq~~gIi--G~nGaGKTTLl~ 89 (347)
T 2obl_A 69 GIGQRIGIF--AGSGVGKSTLLG 89 (347)
T ss_dssp ETTCEEEEE--ECTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468898899 999999999965
No 242
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=78.13 E-value=0.89 Score=46.14 Aligned_cols=19 Identities=32% Similarity=0.301 Sum_probs=15.7
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|+...+. ||||||||||.-
T Consensus 169 geiv~l~--G~sG~GKSTll~ 187 (301)
T 1u0l_A 169 GKISTMA--GLSGVGKSSLLN 187 (301)
T ss_dssp SSEEEEE--CSTTSSHHHHHH
T ss_pred CCeEEEE--CCCCCcHHHHHH
Confidence 6677777 999999999854
No 243
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.85 E-value=0.86 Score=44.60 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=30.0
Q ss_pred hhHhhhcCCHHHHHHHHHHHHHHHHHh--h----CCCccHHHHHHHHHH
Q psy13077 582 DLEELFSFDKSFWEQEVQDLQRYFNEQ--L----GADLPTAIQAEIDAL 624 (630)
Q Consensus 582 ~~~~~~~~d~~~w~~e~~~l~~~f~~~--~----~~~lP~ei~~~l~~~ 624 (630)
+.++.+..+.+.|.++...+.++|.++ + ++.-++++.+++.+.
T Consensus 192 d~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 240 (243)
T 3tlx_A 192 DNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQH 240 (243)
T ss_dssp GSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHH
Confidence 566777788889999999999999752 1 334566666666543
No 244
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=77.40 E-value=0.77 Score=47.54 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.3
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. ||||||||||..
T Consensus 169 ~~g~~v~i~--G~~GsGKTTll~ 189 (330)
T 2pt7_A 169 AIGKNVIVC--GGTGSGKTTYIK 189 (330)
T ss_dssp HHTCCEEEE--ESTTSCHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 457777777 999999999865
No 245
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=77.37 E-value=0.97 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 45 ~~Ge~~~Lv--G~NGaGKSTLlk 65 (538)
T 1yqt_A 45 KEGMVVGIV--GPNGTGKSTAVK 65 (538)
T ss_dssp CTTSEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 246
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.24 E-value=0.9 Score=47.88 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=13.9
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-+||+||||||||.
T Consensus 42 lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 44445999999999987
No 247
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=77.21 E-value=0.81 Score=54.12 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=28.8
Q ss_pred ccch-hccccCCCCCEEEEEeEcCCccchhhhcccC-----------CCCCCCeeEEee
Q psy13077 270 EHML-ILGITNPEGQKKYIAAAFPSACGKTNLAMLN-----------PTLPGYKVECVG 316 (630)
Q Consensus 270 eHm~-i~gv~~p~G~~~~f~~afpSg~GKTtLam~~-----------p~~pgwk~~lIG 316 (630)
+|=+ ++-+.=|.++-..|+ |+|||||||||. | -+++-|-|..++
T Consensus 11 ~hNLkni~~~ip~~~l~v~t--G~SGSGKSsLaf-dtl~aegqrry~es~s~y~r~~l~ 66 (916)
T 3pih_A 11 VHNLKNITVRIPKNRLVVIT--GVSGSGKSSLAM-DTIYAEGQRRYLESLSTYARQFLG 66 (916)
T ss_dssp STTCCSBCCEEETTSEEEEE--ESTTSSSHHHHT-TTHHHHHHHHHHTTSCCC------
T ss_pred ccccCcceeccCCCcEEEEE--CCCCCcHHHHHH-HHHHHHHHHHHHHhccHHHHHhcc
Confidence 3444 455566889889999 999999999998 5 345667677666
No 248
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=77.17 E-value=0.81 Score=46.11 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.2
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..++. ||+|||||+||..
T Consensus 57 ~vll~--G~~GtGKT~la~~ 74 (338)
T 3pfi_A 57 HILFS--GPAGLGKTTLANI 74 (338)
T ss_dssp CEEEE--CSTTSSHHHHHHH
T ss_pred eEEEE--CcCCCCHHHHHHH
Confidence 46777 9999999999873
No 249
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=77.17 E-value=0.94 Score=46.24 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.4
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. ||+|||||+||.
T Consensus 152 ~~~lll~--G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLY--GDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEE--CSTTSSHHHHHH
T ss_pred CceEEEE--CCCCCCHHHHHH
Confidence 4568888 999999999985
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=77.12 E-value=0.86 Score=50.22 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=18.1
Q ss_pred cccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 276 GITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 276 gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+..-|.| .++. ||+|||||||+-+
T Consensus 60 g~~ip~G--vLL~--GppGtGKTtLara 83 (499)
T 2dhr_A 60 GARIPKG--VLLV--GPPGVGKTHLARA 83 (499)
T ss_dssp SCCCCSE--EEEE--CSSSSSHHHHHHH
T ss_pred cCCCCce--EEEE--CCCCCCHHHHHHH
Confidence 3344666 6777 9999999999863
No 251
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=77.05 E-value=0.86 Score=43.15 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHHH
Q psy13077 584 EELFSFDKSFWEQEVQDLQRYFNE 607 (630)
Q Consensus 584 ~~~~~~d~~~w~~e~~~l~~~f~~ 607 (630)
++.+....+.|.+++..+.++|.+
T Consensus 161 ~~~~~~rl~~y~~~~~~l~~~~~~ 184 (214)
T 1e4v_A 161 EETVRKRLVEYHQMTAPLIGYYSK 184 (214)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556677777778888863
No 252
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.01 E-value=0.91 Score=47.48 Aligned_cols=17 Identities=47% Similarity=0.489 Sum_probs=14.1
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-+|||||||||||.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 44445999999999998
No 253
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=76.86 E-value=1 Score=44.53 Aligned_cols=18 Identities=22% Similarity=0.192 Sum_probs=14.2
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.+++-.|++||||||++.
T Consensus 22 ~~i~~~G~~g~GKst~~~ 39 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSH 39 (223)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 444445999999999986
No 254
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=76.69 E-value=1 Score=45.96 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=26.1
Q ss_pred CCCEEEEEeEcCCccchhhhcccCC----CCCCCeeEEeeccE
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAMLNP----TLPGYKVECVGDDI 319 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~~p----~~pgwk~~lIGDDi 319 (630)
.|+...|. |++|+|||||+..-. ...|.+|-+++-|.
T Consensus 104 ~g~vi~lv--G~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLF--GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEE--ESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEE--CCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46677776 999999999876211 12477788877775
No 255
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.64 E-value=0.86 Score=49.68 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=19.8
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+|+.-|.| .++. ||+|||||.||..
T Consensus 211 ~Gi~~prG--vLLy--GPPGTGKTlLAkA 235 (437)
T 4b4t_I 211 MGIKPPKG--VILY--GAPGTGKTLLAKA 235 (437)
T ss_dssp HTCCCCSE--EEEE--SSTTTTHHHHHHH
T ss_pred CCCCCCCC--CceE--CCCCchHHHHHHH
Confidence 35555655 8888 9999999999863
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=76.64 E-value=0.87 Score=47.90 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+.+.++ |++||||||||+
T Consensus 61 ~~G~ii~I~--G~pGsGKTtLal 81 (356)
T 1u94_A 61 PMGRIVEIY--GPESSGKTTLTL 81 (356)
T ss_dssp ETTSEEEEE--CSTTSSHHHHHH
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999987
No 257
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=76.63 E-value=0.88 Score=50.47 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 292 ~~Gei~~i~--G~nGsGKSTLl~ 312 (538)
T 3ozx_A 292 KEGEIIGIL--GPNGIGKTTFAR 312 (538)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999965
No 258
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=76.62 E-value=0.81 Score=46.03 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=12.4
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.||||||||||.-
T Consensus 5 v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVN 20 (270)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3445999999999843
No 259
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=76.43 E-value=1.1 Score=45.69 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.7
Q ss_pred CCCEEEEEeEcCCccchhhhc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLa 301 (630)
.|+...+. ||||+|||||.
T Consensus 164 ~G~i~~l~--G~sG~GKSTLl 182 (302)
T 2yv5_A 164 EGFICILA--GPSGVGKSSIL 182 (302)
T ss_dssp TTCEEEEE--CSTTSSHHHHH
T ss_pred cCcEEEEE--CCCCCCHHHHH
Confidence 46777777 99999999985
No 260
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.28 E-value=0.69 Score=48.70 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=17.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|....++ ||+|||||+||+
T Consensus 121 ~~gsviLI~--GpPGsGKTtLAl 141 (331)
T 2vhj_A 121 YASGMVIVT--GKGNSGKTPLVH 141 (331)
T ss_dssp EESEEEEEE--CSCSSSHHHHHH
T ss_pred CCCcEEEEE--cCCCCCHHHHHH
Confidence 557667777 999999999998
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=76.22 E-value=1.2 Score=42.95 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=24.2
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHh-----h-CCCccHHHHHHHHHHHHH
Q psy13077 585 ELFSFDKSFWEQEVQDLQRYFNEQ-----L-GADLPTAIQAEIDALKQR 627 (630)
Q Consensus 585 ~~~~~d~~~w~~e~~~l~~~f~~~-----~-~~~lP~ei~~~l~~~~~r 627 (630)
+.+....+.|.++...+.++|.++ + ++.-++++.+++.+..++
T Consensus 182 ~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 182 KALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 333334456777766677777531 1 344566777766655443
No 262
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=76.10 E-value=0.99 Score=44.77 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=16.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|+..-.+|. ||.||||||+|+
T Consensus 56 Pkkn~ili~--GPPGtGKTt~a~ 76 (212)
T 1tue_A 56 PKKNCLVFC--GPANTGKSYFGM 76 (212)
T ss_dssp TTCSEEEEE--SCGGGCHHHHHH
T ss_pred CcccEEEEE--CCCCCCHHHHHH
Confidence 554456667 999999999987
No 263
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.09 E-value=1.1 Score=46.34 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.6
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
.+..++. ||+|||||+||..
T Consensus 117 ~~~vLl~--GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLF--GPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEE--SSTTSSHHHHHHH
T ss_pred CceEEEE--CCCCCCHHHHHHH
Confidence 4467888 9999999999863
No 264
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.96 E-value=1.1 Score=46.36 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.7
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
...+|. ||+|||||+||..
T Consensus 73 ~~ill~--Gp~GtGKT~la~~ 91 (376)
T 1um8_A 73 SNILLI--GPTGSGKTLMAQT 91 (376)
T ss_dssp CCEEEE--CCTTSSHHHHHHH
T ss_pred CCEEEE--CCCCCCHHHHHHH
Confidence 357777 9999999999863
No 265
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=75.93 E-value=0.96 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=17.6
Q ss_pred cccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 276 GITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 276 gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
|..-|.| .++. ||+|||||+||-
T Consensus 45 g~~~p~g--vLL~--GppGtGKT~Lar 67 (476)
T 2ce7_A 45 GARMPKG--ILLV--GPPGTGKTLLAR 67 (476)
T ss_dssp TCCCCSE--EEEE--CCTTSSHHHHHH
T ss_pred CCCCCCe--EEEE--CCCCCCHHHHHH
Confidence 3444555 6777 999999999985
No 266
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=75.80 E-value=0.84 Score=45.40 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.8
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
...++. ||+|||||+||..
T Consensus 39 ~~vll~--G~~GtGKT~la~~ 57 (324)
T 1hqc_A 39 EHLLLF--GPPGLGKTTLAHV 57 (324)
T ss_dssp CCCEEE--CCTTCCCHHHHHH
T ss_pred CcEEEE--CCCCCCHHHHHHH
Confidence 457777 9999999999873
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.06 E-value=1.1 Score=46.77 Aligned_cols=16 Identities=56% Similarity=0.663 Sum_probs=13.2
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|||||||||||.
T Consensus 8 i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3344999999999987
No 268
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=74.98 E-value=0.99 Score=48.80 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.1
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-+|||||||||||.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 45556999999999986
No 269
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.98 E-value=1 Score=50.22 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.5
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...|. ||||||||||+.
T Consensus 59 ~g~~vll~--Gp~GtGKTtlar 78 (604)
T 3k1j_A 59 QKRHVLLI--GEPGTGKSMLGQ 78 (604)
T ss_dssp TTCCEEEE--CCTTSSHHHHHH
T ss_pred CCCEEEEE--eCCCCCHHHHHH
Confidence 35567777 999999999986
No 270
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=74.85 E-value=1.2 Score=50.12 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=18.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 101 ~~Gei~~Lv--GpNGaGKSTLLk 121 (608)
T 3j16_B 101 RPGQVLGLV--GTNGIGKSTALK 121 (608)
T ss_dssp CTTSEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCChHHHHHH
Confidence 468888888 999999999854
No 271
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.75 E-value=1 Score=46.72 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=15.0
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
-.++. ||+|||||+||.
T Consensus 86 ~iLL~--GppGtGKT~la~ 102 (355)
T 2qp9_X 86 GILLY--GPPGTGKSYLAK 102 (355)
T ss_dssp CEEEE--CSTTSCHHHHHH
T ss_pred eEEEE--CCCCCcHHHHHH
Confidence 47788 999999999986
No 272
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=74.73 E-value=1.1 Score=47.88 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=15.8
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
+-.+|. ||+|||||+||..
T Consensus 64 ~~iLl~--GppGtGKT~la~a 82 (456)
T 2c9o_A 64 RAVLLA--GPPGTGKTALALA 82 (456)
T ss_dssp CEEEEE--CCTTSSHHHHHHH
T ss_pred CeEEEE--CCCcCCHHHHHHH
Confidence 447777 9999999999873
No 273
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=74.23 E-value=1.1 Score=46.74 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.6
Q ss_pred CCCCCEEEEEeEcCCccchhhhcc
Q psy13077 279 NPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 279 ~p~G~~~~f~~afpSg~GKTtLam 302 (630)
+..+...|+. ||.|||||+++.
T Consensus 42 ~~~~~~lli~--GpPGTGKT~~v~ 63 (318)
T 3te6_A 42 SSQNKLFYIT--NADDSTKFQLVN 63 (318)
T ss_dssp TTCCCEEEEE--CCCSHHHHHHHH
T ss_pred CCCCCeEEEE--CCCCCCHHHHHH
Confidence 4556788999 999999999976
No 274
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=74.16 E-value=1.3 Score=45.77 Aligned_cols=38 Identities=21% Similarity=0.079 Sum_probs=25.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcccCCC---CCCCeeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~p~---~pgwk~~lIGDDi 319 (630)
..|+...|+ |++|+||||++..-.. ..|.++-+++-|.
T Consensus 103 ~~~~vI~iv--G~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLV--GVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEE--SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456666676 8999999998762110 1356788877664
No 275
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=74.10 E-value=1.2 Score=42.79 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=11.8
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.|++||||||+|-
T Consensus 6 ~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 6 FGPNGSGKGTQGN 18 (223)
T ss_dssp ECCTTSCHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3999999999986
No 276
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.87 E-value=1.1 Score=44.89 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.2
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.+|. ||+|||||||+.
T Consensus 61 ~ll~--G~~G~GKT~la~ 76 (353)
T 1sxj_D 61 MLFY--GPPGTGKTSTIL 76 (353)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 6677 999999999986
No 277
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.82 E-value=1.3 Score=43.27 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=15.4
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
.-.++. |++|||||+||.
T Consensus 30 ~~vll~--G~~GtGKt~la~ 47 (265)
T 2bjv_A 30 KPVLII--GERGTGKELIAS 47 (265)
T ss_dssp SCEEEE--CCTTSCHHHHHH
T ss_pred CCEEEE--CCCCCcHHHHHH
Confidence 457777 999999999985
No 278
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=73.73 E-value=1 Score=49.81 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.3
Q ss_pred CCCEEEEEeEcCCccchhhhccc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~ 303 (630)
.|...+|. |+|||||||+|.+
T Consensus 394 ~~~~I~l~--GlsGsGKSTIa~~ 414 (511)
T 1g8f_A 394 QGFSIVLG--NSLTVSREQLSIA 414 (511)
T ss_dssp CCEEEEEC--TTCCSCHHHHHHH
T ss_pred cceEEEec--ccCCCCHHHHHHH
Confidence 56667777 9999999999873
No 279
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.66 E-value=1.3 Score=43.55 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=14.9
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
.+++-.|++||||||++.+
T Consensus 25 ~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp EEEEEECSTTSSHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4555559999999999863
No 280
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.55 E-value=1 Score=49.14 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...+. |+||||||||+.
T Consensus 279 ~~G~i~~i~--G~~GsGKSTLl~ 299 (525)
T 1tf7_A 279 FKDSIILAT--GATGTGKTLLVS 299 (525)
T ss_dssp ESSCEEEEE--ECTTSSHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHH
Confidence 568888888 999999999987
No 281
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.41 E-value=1 Score=45.23 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=14.2
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.++. ||+|||||+||.
T Consensus 48 vLl~--G~~GtGKT~la~ 63 (350)
T 1g8p_A 48 VLVF--GDRGTGKSTAVR 63 (350)
T ss_dssp EEEE--CCGGGCTTHHHH
T ss_pred EEEE--CCCCccHHHHHH
Confidence 6777 999999999986
No 282
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.19 E-value=1.2 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.++..++. ||||||||||+.+
T Consensus 236 ~~~~~vLL~--Gp~GtGKTtLara 257 (806)
T 1ypw_A 236 KPPRGILLY--GPPGTGKTLIARA 257 (806)
T ss_dssp CCCCEEEEC--SCTTSSHHHHHHH
T ss_pred CCCCeEEEE--CcCCCCHHHHHHH
Confidence 346678888 9999999999863
No 283
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=73.19 E-value=1.4 Score=46.56 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.5
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...|. ||||+|||||.-
T Consensus 214 ~G~~~~lv--G~sG~GKSTLln 233 (358)
T 2rcn_A 214 TGRISIFA--GQSGVGKSSLLN 233 (358)
T ss_dssp TTSEEEEE--CCTTSSHHHHHH
T ss_pred CCCEEEEE--CCCCccHHHHHH
Confidence 47777777 999999999954
No 284
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=73.17 E-value=1.4 Score=42.10 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=14.5
Q ss_pred EEEEeEcCCccchhhhccc
Q psy13077 285 KYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~ 303 (630)
..++-.|++||||||+|-+
T Consensus 13 ~iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3444459999999999873
No 285
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.99 E-value=1.3 Score=47.96 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=15.5
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..+|. ||+||||||||.+
T Consensus 52 ~vLL~--GppGtGKTtlAr~ 69 (447)
T 3pvs_A 52 SMILW--GPPGTGKTTLAEV 69 (447)
T ss_dssp EEEEE--CSTTSSHHHHHHH
T ss_pred EEEEE--CCCCCcHHHHHHH
Confidence 56777 9999999999874
No 286
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=72.84 E-value=1.4 Score=47.22 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |++|+|||||++
T Consensus 201 ~~G~liiI~--G~pG~GKTtl~l 221 (454)
T 2r6a_A 201 QRSDLIIVA--ARPSVGKTAFAL 221 (454)
T ss_dssp CTTCEEEEE--CCTTSCHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 668888888 999999999988
No 287
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=72.77 E-value=1.4 Score=43.64 Aligned_cols=19 Identities=16% Similarity=0.037 Sum_probs=15.0
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|....|. |++||||||++.
T Consensus 27 ~~~i~~e--G~~GsGKsT~~~ 45 (236)
T 3lv8_A 27 AKFIVIE--GLEGAGKSTAIQ 45 (236)
T ss_dssp CCEEEEE--ESTTSCHHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 5445555 999999999987
No 288
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=72.50 E-value=1.3 Score=40.17 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=15.0
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|.+..+. |++|+|||||.-
T Consensus 3 ~~~ki~iv--G~~g~GKStLl~ 22 (172)
T 2gj8_A 3 HGMKVVIA--GRPNAGKSSLLN 22 (172)
T ss_dssp -CEEEEEE--ESTTSSHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 45556666 999999999854
No 289
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.20 E-value=1.5 Score=45.70 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=16.9
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
....++. ||+|||||+||..
T Consensus 148 ~~~vLL~--GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLF--GPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEE--SSTTSCHHHHHHH
T ss_pred CceEEEE--CCCCCCHHHHHHH
Confidence 4568888 9999999999873
No 290
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=72.15 E-value=1.4 Score=48.43 Aligned_cols=20 Identities=30% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|++..|+ |+||||||||+.
T Consensus 150 kGq~~~i~--G~sGvGKTtL~~ 169 (473)
T 1sky_E 150 KGGKIGLF--GGAGVGKTVLIQ 169 (473)
T ss_dssp TTCEEEEE--CCSSSCHHHHHH
T ss_pred cCCEEEEE--CCCCCCccHHHH
Confidence 47788899 999999999977
No 291
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=72.11 E-value=1.1 Score=53.39 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.6
Q ss_pred hccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 274 ILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 274 i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
++-|.=|.++-..|+ |+|||||+|||+
T Consensus 38 ni~v~iP~~~lvv~t--G~SGSGKSSLaf 64 (993)
T 2ygr_A 38 SVDLDLPRDALIVFT--GLSGSGKSSLAF 64 (993)
T ss_dssp SEEEEEESSSEEEEE--ESTTSSHHHHHT
T ss_pred ceeeeccCCCEEEEE--CCCCCcHHHHHH
Confidence 334555889889999 999999999998
No 292
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=72.10 E-value=1.2 Score=52.25 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.9
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
+-|.=|.|+-+.|+ |+|||||||||.
T Consensus 29 i~v~iP~~~l~viT--GvSGSGKSSLaf 54 (842)
T 2vf7_A 29 ISVKVPRDALVVFT--GVSGSGKSSLAF 54 (842)
T ss_dssp EEEEEESSSEEEEE--SSTTSSHHHHHT
T ss_pred eeEEecCCCEEEEE--CCCCCCHHHHHH
Confidence 33445889889999 999999999998
No 293
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.09 E-value=1.6 Score=47.54 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.0
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
+..+|. ||+||||||||..
T Consensus 78 ~~lLL~--GppGtGKTtla~~ 96 (516)
T 1sxj_A 78 RAAMLY--GPPGIGKTTAAHL 96 (516)
T ss_dssp SEEEEE--CSTTSSHHHHHHH
T ss_pred cEEEEE--CCCCCCHHHHHHH
Confidence 467777 9999999999863
No 294
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=72.01 E-value=1.3 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||+|||||||.-
T Consensus 310 ~~Ge~~~i~--G~NGsGKSTLlk 330 (538)
T 1yqt_A 310 KKGEVIGIV--GPNGIGKTTFVK 330 (538)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 295
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=71.94 E-value=1.4 Score=47.00 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |++|+|||+|++
T Consensus 198 ~~G~l~ii~--G~pg~GKT~lal 218 (444)
T 2q6t_A 198 GPGSLNIIA--ARPAMGKTAFAL 218 (444)
T ss_dssp CTTCEEEEE--ECTTSCHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHH
Confidence 568888888 999999999988
No 296
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=71.93 E-value=1.4 Score=41.03 Aligned_cols=31 Identities=32% Similarity=0.165 Sum_probs=13.9
Q ss_pred ccccchhccccCCCCCEEEEEeEcCCccchhhhc
Q psy13077 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 268 LaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLa 301 (630)
+.+||.-+. ...+..-++-.|++|+|||||.
T Consensus 17 ~~~~m~~~~---~~~~~~ki~vvG~~~~GKSsLi 47 (204)
T 4gzl_A 17 RGSHMENLY---FQGQAIKCVVVGDGAVGKTCLL 47 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHH
T ss_pred chhHHHhHh---hcCCeEEEEEECcCCCCHHHHH
Confidence 567886332 1233344444599999999996
No 297
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=71.74 E-value=1.5 Score=39.90 Aligned_cols=13 Identities=31% Similarity=0.276 Sum_probs=11.4
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.|+||||||||..
T Consensus 8 vG~~gvGKStLl~ 20 (184)
T 2zej_A 8 VGNTGSGKTTLLQ 20 (184)
T ss_dssp ESCTTSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3999999999965
No 298
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=71.65 E-value=1.6 Score=49.06 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 115 ~~Ge~~~Li--G~NGsGKSTLlk 135 (607)
T 3bk7_A 115 KDGMVVGIV--GPNGTGKTTAVK 135 (607)
T ss_dssp CTTSEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCChHHHHHH
Confidence 579888888 999999999965
No 299
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.50 E-value=1.5 Score=47.54 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
..|++..++ ||||||||||+.+
T Consensus 172 ~rGQr~~Iv--G~sG~GKTtLl~~ 193 (422)
T 3ice_A 172 GRGQRGLIV--APPKAGKTMLLQN 193 (422)
T ss_dssp BTTCEEEEE--CCSSSSHHHHHHH
T ss_pred cCCcEEEEe--cCCCCChhHHHHH
Confidence 358899999 9999999999863
No 300
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=71.49 E-value=1.2 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.0
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
+-|.=|.++-..|+ |+|||||||||.
T Consensus 37 i~v~iP~~~lvv~t--G~SGSGKSSLaf 62 (972)
T 2r6f_A 37 IDVEIPRGKLVVLT--GLSGSGKSSLAF 62 (972)
T ss_dssp EEEEEETTSEEEEE--ESTTSSHHHHHT
T ss_pred eeeeccCCcEEEEE--CCCCCCHHHHHH
Confidence 34445889889999 999999999998
No 301
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.30 E-value=1.2 Score=44.89 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=15.2
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
.-.++. ||+|||||+||.
T Consensus 47 ~~vll~--G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLE--GVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEE--SCCCHHHHHHHH
T ss_pred CeEEEE--CCCCCcHHHHHH
Confidence 357777 999999999985
No 302
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.15 E-value=1.3 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.7
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|.|++.-+. ||||||||||..+
T Consensus 442 ~~G~~vaiv--G~sGsGKSTll~l 463 (1321)
T 4f4c_A 442 NAGQTVALV--GSSGCGKSTIISL 463 (1321)
T ss_dssp CTTCEEEEE--ECSSSCHHHHHHH
T ss_pred cCCcEEEEE--ecCCCcHHHHHHH
Confidence 679988888 9999999999874
No 303
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=71.08 E-value=1.5 Score=46.90 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.1
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
+-.++. ||+|||||+||..
T Consensus 168 ~~vLL~--GppGtGKT~lA~a 186 (444)
T 2zan_A 168 RGILLF--GPPGTGKSYLAKA 186 (444)
T ss_dssp SEEEEE--CSTTSSHHHHHHH
T ss_pred ceEEEE--CCCCCCHHHHHHH
Confidence 457888 9999999999863
No 304
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=70.98 E-value=1 Score=46.52 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...|. ||||+|||||.-
T Consensus 172 ~G~~~~lv--G~sG~GKSTLln 191 (307)
T 1t9h_A 172 QDKTTVFA--GQSGVGKSSLLN 191 (307)
T ss_dssp TTSEEEEE--ESHHHHHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 58888888 999999999854
No 305
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=70.89 E-value=1.5 Score=42.32 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=13.6
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
+++-.|++||||||++.
T Consensus 4 ~i~~~G~~g~GKtt~~~ 20 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVK 20 (241)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 34445999999999976
No 306
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=70.66 E-value=1.7 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=16.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|...-++-.|+||||||||.-
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMD 60 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHH
Confidence 57887223334999999999954
No 307
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=70.62 E-value=1.7 Score=47.75 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=14.7
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+..-+. ||||||||||.-
T Consensus 30 e~~~li--G~nGsGKSTLl~ 47 (483)
T 3euj_A 30 LVTTLS--GGNGAGKSTTMA 47 (483)
T ss_dssp SEEEEE--CCTTSSHHHHHH
T ss_pred ceEEEE--CCCCCcHHHHHH
Confidence 666666 999999999853
No 308
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=70.50 E-value=1.8 Score=48.82 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.2
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
+|+..-+. ||||||||||.-
T Consensus 377 ~GEiv~ii--G~NGsGKSTLlk 396 (608)
T 3j16_B 377 DSEILVMM--GENGTGKTTLIK 396 (608)
T ss_dssp TTCEEEEE--SCTTSSHHHHHH
T ss_pred cceEEEEE--CCCCCcHHHHHH
Confidence 45667777 999999999964
No 309
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.41 E-value=1.5 Score=48.41 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=15.9
Q ss_pred CCCCEEEEEeEcCCccchhhhc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLa 301 (630)
+.|....+. ||+|||||||.
T Consensus 258 ~~g~~i~I~--GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFSAIVV--GETASGKTTTL 277 (511)
T ss_dssp HTTCCEEEE--ESTTSSHHHHH
T ss_pred hCCCEEEEE--CCCCCCHHHHH
Confidence 456666777 99999999984
No 310
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=70.35 E-value=1.5 Score=43.06 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=14.1
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.+|. ||+|||||+++.
T Consensus 41 ~ll~--G~~G~GKt~la~ 56 (319)
T 2chq_A 41 LLFS--GPPGTGKTATAI 56 (319)
T ss_dssp EEEE--SSSSSSHHHHHH
T ss_pred EEEE--CcCCcCHHHHHH
Confidence 6677 999999999986
No 311
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=70.34 E-value=1.8 Score=41.60 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=15.4
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
+|+...+. ||+||||||+..
T Consensus 75 ~g~~~~i~--g~TGsGKTt~~~ 94 (235)
T 3llm_A 75 QNSVVIIR--GATGCGKTTQVP 94 (235)
T ss_dssp HCSEEEEE--CCTTSSHHHHHH
T ss_pred cCCEEEEE--eCCCCCcHHhHH
Confidence 46666666 999999999644
No 312
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=70.33 E-value=1.7 Score=40.95 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.4
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|...+++ |+-||||||+++
T Consensus 3 g~i~vi~--G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVIT--GPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEE--ESTTSSHHHHHH
T ss_pred cEEEEEE--CCCCCCHHHHHH
Confidence 6677788 999999999974
No 313
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=70.27 E-value=1.4 Score=45.12 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=30.1
Q ss_pred eEcCCccchhhhccc-CCCCCCCeeEEeeccEEEEEECCCccE------EEeccCCCeeEecc
Q psy13077 289 AAFPSACGKTNLAML-NPTLPGYKVECVGDDIAWMKFDKEGVL------RAINPENGFFGVAP 344 (630)
Q Consensus 289 ~afpSg~GKTtLam~-~p~~pgwk~~lIGDDiaW~~~~~dG~l------~a~NpE~G~fgk~~ 344 (630)
-.|+||+|||||.-+ -...+|.++-+|--|.+.+.+ ||.+ ..+...+||-+-+.
T Consensus 9 i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~i--dg~~l~~~~~~~~el~~gCicc~~ 69 (318)
T 1nij_A 9 LTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSV--DDQLIGDRATQIKTLTNGCICCSR 69 (318)
T ss_dssp EEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCE--EEEEECTTSCEEEEETTSCEEECT
T ss_pred EEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCc--cHHHHhCCCCCEEEECCCceEEcc
Confidence 349999999998531 111245566666656544433 2221 12444688866554
No 314
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=70.08 E-value=1.5 Score=46.37 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=18.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+...++ |++|||||||++
T Consensus 72 ~~G~li~I~--G~pGsGKTtlal 92 (366)
T 1xp8_A 72 PRGRITEIY--GPESGGKTTLAL 92 (366)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred cCCcEEEEE--cCCCCChHHHHH
Confidence 668888887 999999999987
No 315
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=69.98 E-value=1.7 Score=48.20 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=17.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 23 ~~Gei~gLi--GpNGaGKSTLlk 43 (538)
T 3ozx_A 23 KNNTILGVL--GKNGVGKTTVLK 43 (538)
T ss_dssp CTTEEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCcHHHHHH
Confidence 468777777 999999999864
No 316
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=69.91 E-value=1.6 Score=43.12 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=14.0
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.+|. ||+|||||||+.
T Consensus 49 ~ll~--G~~G~GKT~la~ 64 (327)
T 1iqp_A 49 LLFA--GPPGVGKTTAAL 64 (327)
T ss_dssp EEEE--SCTTSSHHHHHH
T ss_pred EEEE--CcCCCCHHHHHH
Confidence 6666 999999999986
No 317
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=69.53 E-value=1.8 Score=39.89 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=12.6
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 8 v~lvG~~g~GKSTLl~ 23 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLS 23 (199)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 3444999999999964
No 318
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=69.27 E-value=1.9 Score=43.53 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.6
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..+|. ||+|||||||+.
T Consensus 40 ~~ll~--G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFS--GTRGVGKTSIAR 56 (373)
T ss_dssp EEEEE--SCTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 45677 999999999976
No 319
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=68.99 E-value=2.1 Score=45.33 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=15.9
Q ss_pred CCCEEEEEeEcCCccchhhhc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLa 301 (630)
.|+...|. ||+|||||||.
T Consensus 25 ~~~~~~i~--G~nG~GKstll 43 (430)
T 1w1w_A 25 ESNFTSII--GPNGSGKSNMM 43 (430)
T ss_dssp TCSEEEEE--CSTTSSHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHH
Confidence 36678888 99999999974
No 320
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=68.98 E-value=1.1 Score=44.34 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=10.6
Q ss_pred cCCccchhhhcc
Q psy13077 291 FPSACGKTNLAM 302 (630)
Q Consensus 291 fpSg~GKTtLam 302 (630)
||||||||||.-
T Consensus 34 GpnGsGKSTll~ 45 (227)
T 1qhl_A 34 GGNGAGKSTTMA 45 (227)
T ss_dssp SCCSHHHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 899999999844
No 321
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=68.93 E-value=1.9 Score=41.89 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=14.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|....|. |++||||||++.
T Consensus 6 g~~i~~e--G~~gsGKsT~~~ 24 (213)
T 4edh_A 6 GLFVTLE--GPEGAGKSTNRD 24 (213)
T ss_dssp CEEEEEE--CSTTSSHHHHHH
T ss_pred ceEEEEE--cCCCCCHHHHHH
Confidence 5344444 999999999986
No 322
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=68.48 E-value=2 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=19.6
Q ss_pred ccccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 275 ~gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+|+.-|.| .++. ||+|||||+||-.
T Consensus 233 ~g~~~p~G--ILL~--GPPGTGKT~LAra 257 (806)
T 3cf2_A 233 IGVKPPRG--ILLY--GPPGTGKTLIARA 257 (806)
T ss_dssp CCCCCCCE--EEEE--CCTTSCHHHHHHH
T ss_pred cCCCCCCe--EEEE--CCCCCCHHHHHHH
Confidence 35555655 7888 9999999999874
No 323
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=68.36 E-value=1.7 Score=44.12 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=24.0
Q ss_pred CCCEEEEEeEcCCccchhhhcccCCC---CCCCeeEEeeccE
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGDDI 319 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~~p~---~pgwk~~lIGDDi 319 (630)
.|+...+. |++|+|||||+..-.. ..|.++.+++-|.
T Consensus 97 ~~~~i~i~--g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLV--GLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEE--CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 46666666 9999999999762110 1245677776664
No 324
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=67.98 E-value=1.9 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 380 ~~Gei~~i~--G~NGsGKSTLlk 400 (607)
T 3bk7_A 380 RKGEVIGIV--GPNGIGKTTFVK 400 (607)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 325
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=67.69 E-value=2.1 Score=47.84 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.6
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|...+|. |+|||||||+|.
T Consensus 395 ~~~~I~l~--GlsGSGKSTiA~ 414 (573)
T 1m8p_A 395 QGFTIFLT--GYMNSGKDAIAR 414 (573)
T ss_dssp CCEEEEEE--CSTTSSHHHHHH
T ss_pred cceEEEee--cCCCCCHHHHHH
Confidence 34455555 999999999987
No 326
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=67.65 E-value=1.8 Score=52.90 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.3
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. |+||||||||..+
T Consensus 1103 ~~Ge~vaIV--G~SGsGKSTL~~l 1124 (1321)
T 4f4c_A 1103 EPGQTLALV--GPSGCGKSTVVAL 1124 (1321)
T ss_dssp CTTCEEEEE--CSTTSSTTSHHHH
T ss_pred CCCCEEEEE--CCCCChHHHHHHH
Confidence 568888888 9999999999874
No 327
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=67.57 E-value=2.2 Score=42.28 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=15.3
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
....+. ||+|||||||+.
T Consensus 32 ~~v~i~--G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLL--GIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEE--CCTTSSHHHHHH
T ss_pred CeEEEE--CCCcCCHHHHHH
Confidence 567777 999999999976
No 328
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=67.55 E-value=2.1 Score=42.27 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=11.8
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|....|. |++||||||++.
T Consensus 25 g~~I~~e--G~~GsGKsT~~~ 43 (227)
T 3v9p_A 25 GKFITFE--GIDGAGKTTHLQ 43 (227)
T ss_dssp CCEEEEE--CCC---CHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 5444444 999999999987
No 329
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=67.19 E-value=2.4 Score=45.09 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=16.2
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+...++-.|++|||||||+-
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHH
Confidence 4666344445999999999985
No 330
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.12 E-value=1.9 Score=42.34 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=14.0
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.+|. ||+|||||+|+.
T Consensus 45 ~ll~--G~~G~GKt~la~ 60 (323)
T 1sxj_B 45 MIIS--GMPGIGKTTSVH 60 (323)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CcCCCCHHHHHH
Confidence 6666 999999999986
No 331
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=66.85 E-value=2.4 Score=46.38 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=16.0
Q ss_pred CEEEEEeEcCCccchhhhccc
Q psy13077 283 QKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam~ 303 (630)
...++. ||||||||+||-.
T Consensus 239 ~~vLL~--GppGtGKT~lAra 257 (489)
T 3hu3_A 239 RGILLY--GPPGTGKTLIARA 257 (489)
T ss_dssp CEEEEE--CSTTSSHHHHHHH
T ss_pred CcEEEE--CcCCCCHHHHHHH
Confidence 357888 9999999999873
No 332
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=66.77 E-value=3.3 Score=37.10 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=15.5
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
-...-++-.|++|+|||||.-
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~ 36 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTI 36 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHH
Confidence 345555556999999999954
No 333
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=69.80 E-value=1.2 Score=41.13 Aligned_cols=32 Identities=31% Similarity=0.221 Sum_probs=20.2
Q ss_pred ccccchhccccCCCCCEEEEEeEcCCccchhhhcc
Q psy13077 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 268 LaeHm~i~gv~~p~G~~~~f~~afpSg~GKTtLam 302 (630)
.++||.-. . .+.+..-++-.|++|+|||||..
T Consensus 17 ~~~~m~~~-~--~~~~~~ki~v~G~~~~GKSsli~ 48 (204)
T 3th5_A 17 RGSHMENL-Y--FQGQAIKCVVVGDGAVGKTCLLI 48 (204)
Confidence 46777522 1 22344444555999999999963
No 334
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=66.21 E-value=2.3 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. ||||||||||..+
T Consensus 414 ~~G~~~~iv--G~sGsGKSTl~~l 435 (1284)
T 3g5u_A 414 KSGQTVALV--GNSGCGKSTTVQL 435 (1284)
T ss_dssp CTTCEEEEE--CCSSSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 679998888 9999999999764
No 335
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=65.91 E-value=2.4 Score=41.60 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=33.9
Q ss_pred hhHhhhcCCHHHHHHHHHHHHHHHHHh------hCCCccHHHHHHHHHHHHHh
Q psy13077 582 DLEELFSFDKSFWEQEVQDLQRYFNEQ------LGADLPTAIQAEIDALKQRI 628 (630)
Q Consensus 582 ~~~~~~~~d~~~w~~e~~~l~~~f~~~------~~~~lP~ei~~~l~~~~~rl 628 (630)
|.++.+.-+-+.|.++..-+.+||+++ -|+.-+++|++++.+..+++
T Consensus 162 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 162 DNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 456666667788999999999999752 24556778887777666554
No 336
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=65.89 E-value=2.4 Score=48.21 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.3
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|...+|. |+|||||||+|-
T Consensus 51 ~g~lIvLt--GlsGSGKSTlAr 70 (630)
T 1x6v_B 51 RGCTVWLT--GLSGAGKTTVSM 70 (630)
T ss_dssp CCEEEEEE--CSTTSSHHHHHH
T ss_pred CCCEEEEE--eCCCCCHHHHHH
Confidence 45556676 999999999986
No 337
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=65.17 E-value=2.5 Score=36.52 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=12.0
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
+..|++|+|||||..
T Consensus 7 ~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 7 VVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEESTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 334999999999964
No 338
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=65.02 E-value=2.6 Score=40.94 Aligned_cols=19 Identities=21% Similarity=0.057 Sum_probs=14.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|.-..|. |++||||||++.
T Consensus 3 g~~i~~e--G~~gsGKsT~~~ 21 (213)
T 4tmk_A 3 SKYIVIE--GLEGAGKTTARN 21 (213)
T ss_dssp CCEEEEE--ECTTSCHHHHHH
T ss_pred CeEEEEE--CCCCCCHHHHHH
Confidence 5445555 999999999976
No 339
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=65.00 E-value=3.2 Score=37.08 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=12.7
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 6 v~lvG~~gvGKStL~~ 21 (165)
T 2wji_A 6 IALIGNPNVGKSTIFN 21 (165)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3444999999999965
No 340
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=64.92 E-value=2 Score=44.00 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=15.4
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++.-.||+|||||||+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHH
Confidence 445666113999999999976
No 341
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=64.90 E-value=2.8 Score=41.05 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=15.7
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|....|- |++||||||++.
T Consensus 4 ~g~~i~~e--G~~g~GKst~~~ 23 (216)
T 3tmk_A 4 RGKLILIE--GLDRTGKTTQCN 23 (216)
T ss_dssp CCCEEEEE--ECSSSSHHHHHH
T ss_pred CCeEEEEE--CCCCCCHHHHHH
Confidence 36555555 999999999987
No 342
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=64.72 E-value=2.6 Score=43.65 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=23.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcccC----CCCCCCeeEEeeccE
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGDDI 319 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~----p~~pgwk~~lIGDDi 319 (630)
..|...-+. |++|+|||||.-.- ++. +-++.++|.|.
T Consensus 53 ~~g~~v~i~--G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~~d~ 93 (337)
T 2qm8_A 53 GRAIRVGIT--GVPGVGKSTTIDALGSLLTAA-GHKVAVLAVDP 93 (337)
T ss_dssp CCSEEEEEE--CCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECG
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHHHHhhhhC-CCEEEEEEEcC
Confidence 457666666 99999999985421 101 23667777665
No 343
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=64.22 E-value=2.8 Score=41.88 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=13.5
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..++. ||+|||||+|+.
T Consensus 50 ~~L~~--G~~G~GKT~la~ 66 (324)
T 3u61_B 50 IILHS--PSPGTGKTTVAK 66 (324)
T ss_dssp EEEEC--SSTTSSHHHHHH
T ss_pred EEEee--CcCCCCHHHHHH
Confidence 34455 889999999987
No 344
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.14 E-value=2.3 Score=53.51 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=20.0
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+.+.++ ||.|||||+||+
T Consensus 1080 p~g~~~l~~--G~~g~GKT~la~ 1100 (1706)
T 3cmw_A 1080 PMGRIVEIY--GPESSGKTTLTL 1100 (1706)
T ss_dssp ETTSEEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--cCCCCChHHHHH
Confidence 789999999 999999999998
No 345
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=64.06 E-value=1.7 Score=45.19 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=16.4
Q ss_pred CCCCEEEEEeEcCCccchhhhc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLa 301 (630)
..| ...+. |++|||||||.
T Consensus 59 ~~G-~~~lv--G~NGaGKStLl 77 (415)
T 4aby_A 59 GGG-FCAFT--GETGAGKSIIV 77 (415)
T ss_dssp CSS-EEEEE--ESHHHHHHHHT
T ss_pred CCC-cEEEE--CCCCCCHHHHH
Confidence 457 88888 99999999995
No 346
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=63.91 E-value=2.5 Score=39.66 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=13.3
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+. |++||||||++.
T Consensus 6 i~i~--G~~gsGkst~~~ 21 (219)
T 2h92_A 6 IALD--GPAAAGKSTIAK 21 (219)
T ss_dssp EEEE--CCTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4455 999999999985
No 347
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=63.85 E-value=2.6 Score=41.58 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.9
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|...+++ |+.|+||||+++
T Consensus 11 ~G~i~lit--G~mGsGKTT~ll 30 (223)
T 2b8t_A 11 IGWIEFIT--GPMFAGKTAELI 30 (223)
T ss_dssp CCEEEEEE--CSTTSCHHHHHH
T ss_pred CcEEEEEE--CCCCCcHHHHHH
Confidence 46677778 999999999876
No 348
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=63.71 E-value=2.7 Score=42.66 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=15.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+...++. |++|||||+||.
T Consensus 25 ~~~vLi~--Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIH--GDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEE--SCTTSCHHHHHH
T ss_pred CCcEEEE--CCCCchHHHHHH
Confidence 3457788 999999999985
No 349
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.42 E-value=2.7 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |++|+|||||++
T Consensus 195 ~~G~liiIa--G~pG~GKTtlal 215 (444)
T 3bgw_A 195 KRRNFVLIA--ARPSMGKTAFAL 215 (444)
T ss_dssp CSSCEEEEE--ECSSSSHHHHHH
T ss_pred CCCcEEEEE--eCCCCChHHHHH
Confidence 568888888 999999999988
No 350
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=63.12 E-value=2.6 Score=50.25 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.4
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+..-+. ||||||||||.-
T Consensus 459 ~~Ge~v~Li--GpNGsGKSTLLk 479 (986)
T 2iw3_A 459 KRARRYGIC--GPNGCGKSTLMR 479 (986)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888888 999999999965
No 351
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=62.88 E-value=3.1 Score=36.31 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=13.6
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 6 ~~i~v~G~~~~GKssl~~ 23 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQ 23 (168)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECcCCCCHHHHHH
Confidence 334445999999999965
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=62.42 E-value=2.8 Score=39.01 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=13.4
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||..
T Consensus 14 ~i~~~--G~~g~GKTsl~~ 30 (218)
T 1nrj_B 14 SIIIA--GPQNSGKTSLLT 30 (218)
T ss_dssp EEEEE--CSTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 34445 999999999964
No 353
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=62.35 E-value=3 Score=43.70 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+...++ |++|+|||||++
T Consensus 44 ~~G~LiiIa--G~pG~GKTt~al 64 (338)
T 4a1f_A 44 NKGSLVIIG--ARPSMGKTSLMM 64 (338)
T ss_dssp CTTCEEEEE--ECTTSCHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHH
Confidence 568888888 999999999987
No 354
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=62.33 E-value=3.2 Score=36.04 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=12.8
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+. |++|+|||||..
T Consensus 4 i~v~--G~~~~GKSsli~ 19 (161)
T 2dyk_A 4 VVIV--GRPNVGKSSLFN 19 (161)
T ss_dssp EEEE--CCTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4455 999999999964
No 355
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=62.28 E-value=2.5 Score=45.71 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ |++|+|||||++
T Consensus 240 ~~G~l~li~--G~pG~GKT~lal 260 (503)
T 1q57_A 240 RGGEVIMVT--SGSGMVMSTFVR 260 (503)
T ss_dssp CTTCEEEEE--ESSCHHHHHHHH
T ss_pred CCCeEEEEe--ecCCCCchHHHH
Confidence 568888888 999999999987
No 356
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=62.12 E-value=3.2 Score=36.72 Aligned_cols=19 Identities=26% Similarity=0.107 Sum_probs=14.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 8 ~~~i~v~G~~~~GKSsli~ 26 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMH 26 (182)
T ss_dssp EEEEEEECCTTSSHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHH
Confidence 3444445999999999964
No 357
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=62.11 E-value=4.7 Score=36.23 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=13.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 8 ~~i~lvG~~gvGKStL~~ 25 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFN 25 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 334445999999999965
No 358
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=62.04 E-value=3.3 Score=36.12 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.6
Q ss_pred EeEcCCccchhhhc
Q psy13077 288 AAAFPSACGKTNLA 301 (630)
Q Consensus 288 ~~afpSg~GKTtLa 301 (630)
+-.|++|+|||||.
T Consensus 7 ~v~G~~~~GKssli 20 (170)
T 1ek0_A 7 VLLGEAAVGKSSIV 20 (170)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 33499999999995
No 359
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=62.01 E-value=3.3 Score=35.92 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=12.3
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 7 i~v~G~~~~GKssl~~ 22 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTL 22 (168)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3334999999999954
No 360
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=62.00 E-value=4.4 Score=37.06 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=15.9
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
.+..-++-.|++|+|||||..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~ 38 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVH 38 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHH
Confidence 345555556999999999973
No 361
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=61.93 E-value=3.2 Score=37.61 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=13.5
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||..
T Consensus 50 ~i~vv--G~~g~GKSsll~ 66 (193)
T 2ged_A 50 SIIIA--GPQNSGKTSLLT 66 (193)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 44455 999999999965
No 362
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=61.90 E-value=2.8 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.2
Q ss_pred CCCCCEEEEEeEcCCccchhhhcc
Q psy13077 279 NPEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 279 ~p~G~~~~f~~afpSg~GKTtLam 302 (630)
=|.|+..-++ |+||||||||+.
T Consensus 520 i~~Geiv~I~--G~nGSGKSTLl~ 541 (842)
T 2vf7_A 520 FPLGVMTSVT--GVSGSGKSTLVS 541 (842)
T ss_dssp EESSSEEEEE--CCTTSSHHHHCC
T ss_pred EcCCCEEEEE--cCCCcCHHHHHH
Confidence 3778888788 999999999987
No 363
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=61.62 E-value=3 Score=41.30 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=14.9
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
...++. ||+|+|||+|+.
T Consensus 31 ~~v~i~--G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVL--GLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEE--ESTTSSHHHHHH
T ss_pred CcEEEE--CCCCCCHHHHHH
Confidence 356666 999999999976
No 364
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=61.17 E-value=3.4 Score=36.24 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=12.2
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
+-.|++|+|||||..
T Consensus 6 ~ivG~~~~GKSsli~ 20 (169)
T 3q85_A 6 MLVGESGVGKSTLAG 20 (169)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 334999999999965
No 365
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=61.14 E-value=3 Score=45.15 Aligned_cols=35 Identities=31% Similarity=0.219 Sum_probs=23.1
Q ss_pred EEEEeEcCCccchhhhcccCCC---CCCCeeEEeeccE
Q psy13077 285 KYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGDDI 319 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~~p~---~pgwk~~lIGDDi 319 (630)
..+.-+||+|+||||++..-.. ..|.+|-+|+-|.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3334449999999998662100 1377888888774
No 366
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=61.12 E-value=4.5 Score=35.67 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=14.6
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+..-++-.|++|+|||||.-
T Consensus 8 ~~~~i~v~G~~~~GKssli~ 27 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTI 27 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34444555999999999963
No 367
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=60.86 E-value=3 Score=49.33 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=17.5
Q ss_pred CCCCEEEEEeEcCCccchhhhc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLa 301 (630)
|.|+..-+. |+||||||||.
T Consensus 608 ~~Geiv~I~--G~SGSGKSTLl 627 (916)
T 3pih_A 608 PLGVFVCVT--GVSGSGKSSLV 627 (916)
T ss_dssp ESSSEEEEE--CSTTSSHHHHH
T ss_pred cCCcEEEEE--ccCCCChhhhH
Confidence 678887777 99999999995
No 368
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=60.79 E-value=5.1 Score=35.42 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=14.4
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 6 ~~ki~v~G~~~~GKssl~~ 24 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTT 24 (178)
T ss_dssp EEEEEEECCTTSSHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHH
Confidence 3444555999999999965
No 369
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=60.70 E-value=4.3 Score=35.12 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=12.0
Q ss_pred EEeEcCCccchhhhc
Q psy13077 287 IAAAFPSACGKTNLA 301 (630)
Q Consensus 287 f~~afpSg~GKTtLa 301 (630)
++-.|++|+|||||.
T Consensus 6 i~v~G~~~~GKSsli 20 (167)
T 1kao_A 6 VVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334499999999994
No 370
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=60.58 E-value=3.6 Score=39.44 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=23.5
Q ss_pred CCCCEEEEEeEcCCccchhhhcccC---CCCCCCeeEEee
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAMLN---PTLPGYKVECVG 316 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~~---p~~pgwk~~lIG 316 (630)
..|+..+++ |+.|+||||+++-. -...|.++-++-
T Consensus 6 ~~g~i~v~~--G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIV--GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEE--CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEE--CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 347777777 99999999987711 001366676663
No 371
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=60.45 E-value=3.3 Score=45.53 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.2
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
|.-.++. ||+|||||+||..
T Consensus 41 ~~~VLL~--GpPGtGKT~LAra 60 (500)
T 3nbx_X 41 GESVFLL--GPPGIAKSLIARR 60 (500)
T ss_dssp TCEEEEE--CCSSSSHHHHHHH
T ss_pred CCeeEee--cCchHHHHHHHHH
Confidence 3467777 9999999999863
No 372
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=60.09 E-value=4.6 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.001 Sum_probs=14.7
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
.-+..+. |++|+|||||.-
T Consensus 8 ~~~i~v~--G~~~~GKssl~~ 26 (178)
T 2lkc_A 8 PPVVTIM--GHVDHGKTTLLD 26 (178)
T ss_dssp CCEEEEE--SCTTTTHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 3455566 999999999965
No 373
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=60.03 E-value=3.5 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.0
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
+.|++.-+. ||||||||||..+
T Consensus 1057 ~~Ge~v~iv--G~sGsGKSTl~~~ 1078 (1284)
T 3g5u_A 1057 KKGQTLALV--GSSGCGKSTVVQL 1078 (1284)
T ss_dssp CSSSEEEEE--CSSSTTHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888888 9999999999764
No 374
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=60.03 E-value=3.7 Score=36.18 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=12.6
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 7 i~i~G~~~vGKSsl~~ 22 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLAS 22 (175)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCccHHHHHH
Confidence 3444999999999964
No 375
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.00 E-value=3.4 Score=39.86 Aligned_cols=45 Identities=9% Similarity=0.196 Sum_probs=32.5
Q ss_pred hhhhHhhhcCCHHHHHHHHHHHHHHHHHh------hCCCccHHHHHHHHHH
Q psy13077 580 DVDLEELFSFDKSFWEQEVQDLQRYFNEQ------LGADLPTAIQAEIDAL 624 (630)
Q Consensus 580 ~~~~~~~~~~d~~~w~~e~~~l~~~f~~~------~~~~lP~ei~~~l~~~ 624 (630)
.-|.++.+.-+-+.|.++...|.+||+++ -|+.-++++.+++.+.
T Consensus 151 ~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~ 201 (206)
T 3sr0_A 151 EDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEV 201 (206)
T ss_dssp GGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence 34677888888899999999999999763 1344556666665544
No 376
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=59.80 E-value=3.3 Score=43.63 Aligned_cols=20 Identities=45% Similarity=0.453 Sum_probs=15.6
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.| ...|. ||+|+|||||.-
T Consensus 25 ~~g-~~~i~--G~nG~GKttll~ 44 (359)
T 2o5v_A 25 PEG-VTGIY--GENGAGKTNLLE 44 (359)
T ss_dssp CSE-EEEEE--CCTTSSHHHHHH
T ss_pred cCC-eEEEE--CCCCCChhHHHH
Confidence 345 66677 999999999943
No 377
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=59.75 E-value=3.8 Score=35.78 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=12.3
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.+. |++|+|||||..
T Consensus 4 ~~~--G~~~~GKssl~~ 18 (164)
T 1r8s_A 4 LMV--GLDAAGKTTILY 18 (164)
T ss_dssp EEE--CSTTSSHHHHHH
T ss_pred EEE--CCCCCCHHHHHH
Confidence 445 999999999964
No 378
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=59.61 E-value=3.7 Score=44.25 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.7
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
-.++. ||+|||||+|+.
T Consensus 203 ~~LL~--G~pG~GKT~la~ 219 (468)
T 3pxg_A 203 NPVLI--GEPGVGKTAIAE 219 (468)
T ss_dssp EEEEE--SCTTTTTHHHHH
T ss_pred CeEEE--CCCCCCHHHHHH
Confidence 46777 999999999986
No 379
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=59.56 E-value=3.6 Score=41.91 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCEEEEEeEcCCccchhhhcccCC-C--CCCCeeEEeeccE
Q psy13077 282 GQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGDDI 319 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~~p-~--~pgwk~~lIGDDi 319 (630)
++...+. |++|+||||++..-. . ..|.++-+++-|.
T Consensus 98 ~~vi~i~--G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLV--GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEE--CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEE--CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5555555 999999999876211 0 1255666666553
No 380
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=59.51 E-value=3.6 Score=35.99 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=11.3
Q ss_pred EcCCccchhhhcc
Q psy13077 290 AFPSACGKTNLAM 302 (630)
Q Consensus 290 afpSg~GKTtLam 302 (630)
.|++|+|||||.-
T Consensus 8 vG~~~~GKSsli~ 20 (166)
T 3q72_A 8 LGAPGVGKSALAR 20 (166)
T ss_dssp EESTTSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3999999999965
No 381
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=59.31 E-value=3.2 Score=45.21 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.7
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
-.++. ||+||||||||-
T Consensus 52 ~iLl~--GppGtGKT~lar 68 (444)
T 1g41_A 52 NILMI--GPTGVGKTEIAR 68 (444)
T ss_dssp CEEEE--CCTTSSHHHHHH
T ss_pred eEEEE--cCCCCCHHHHHH
Confidence 37777 999999999986
No 382
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=59.25 E-value=4.1 Score=35.99 Aligned_cols=18 Identities=17% Similarity=0.054 Sum_probs=13.6
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 8 ~~i~v~G~~~~GKSsli~ 25 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMN 25 (177)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 344445999999999954
No 383
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=59.19 E-value=4.7 Score=35.15 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.3
Q ss_pred EEeEcCCccchhhhc
Q psy13077 287 IAAAFPSACGKTNLA 301 (630)
Q Consensus 287 f~~afpSg~GKTtLa 301 (630)
++-.|++|+|||||.
T Consensus 6 i~v~G~~~~GKssli 20 (172)
T 2erx_A 6 VAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 444599999999996
No 384
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=58.90 E-value=3.7 Score=35.83 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=12.4
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 6 i~v~G~~~~GKssli~ 21 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLV 21 (170)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 3334999999999954
No 385
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=58.70 E-value=4.9 Score=34.95 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=12.3
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||.-
T Consensus 6 i~v~G~~~~GKssli~ 21 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3334999999999943
No 386
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=58.37 E-value=4.1 Score=35.99 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=14.3
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||.-
T Consensus 9 ~~~i~v~G~~~~GKssl~~ 27 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLL 27 (181)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3444445999999999965
No 387
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=58.37 E-value=4.1 Score=35.70 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=12.5
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 10 i~v~G~~~~GKssl~~ 25 (171)
T 1upt_A 10 ILILGLDGAGKTTILY 25 (171)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3334999999999965
No 388
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.31 E-value=4.3 Score=46.05 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.5
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..+|. ||+|||||+||..
T Consensus 490 ~~ll~--G~~GtGKT~la~~ 507 (758)
T 1r6b_X 490 SFLFA--GPTGVGKTEVTVQ 507 (758)
T ss_dssp EEEEE--CSTTSSHHHHHHH
T ss_pred EEEEE--CCCCCcHHHHHHH
Confidence 35555 9999999999863
No 389
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=58.18 E-value=3.6 Score=44.46 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=25.1
Q ss_pred CCCEEEEEeEcCCccchhhhcccCC---CCCCCeeEEeeccE
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGDDI 319 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam~~p---~~pgwk~~lIGDDi 319 (630)
.++...|+ |++||||||++..-. ...|.++.+++-|.
T Consensus 97 ~~~vi~i~--G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLV--GLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEE--CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 35555555 999999999876211 01367888888885
No 390
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=58.05 E-value=4.7 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=13.4
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 7 ~~i~v~G~~~~GKssli~ 24 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVL 24 (170)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 334445999999999963
No 391
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=57.64 E-value=3.8 Score=42.84 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=14.5
Q ss_pred CCCCEEEEEeEcCCccchhhhc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLa 301 (630)
+.| ...++ ||+|+|||||-
T Consensus 22 ~~g-~~~i~--G~NGaGKTTll 40 (365)
T 3qf7_A 22 QSG-ITVVE--GPNGAGKSSLF 40 (365)
T ss_dssp CSE-EEEEE--CCTTSSHHHHH
T ss_pred CCC-eEEEE--CCCCCCHHHHH
Confidence 345 55566 99999999993
No 392
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=57.57 E-value=4.3 Score=36.21 Aligned_cols=18 Identities=28% Similarity=0.135 Sum_probs=13.6
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 12 ~ki~v~G~~~~GKSsli~ 29 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLY 29 (195)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 344445999999999954
No 393
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=57.53 E-value=3.9 Score=36.66 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=13.5
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||.-
T Consensus 25 ~i~v~--G~~~~GKSsli~ 41 (195)
T 3pqc_A 25 EVAFV--GRSNVGKSSLLN 41 (195)
T ss_dssp EEEEE--EBTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 44555 999999999964
No 394
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=57.52 E-value=4.3 Score=35.43 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=13.1
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-.|++|+|||||..
T Consensus 8 ~i~v~G~~~~GKSsli~ 24 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMW 24 (170)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 34445999999999953
No 395
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=57.45 E-value=4.2 Score=36.29 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=14.1
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 6 ~~ki~~~G~~~~GKSsli~ 24 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTI 24 (181)
T ss_dssp EEEEEEEESTTSSHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHH
Confidence 3444555999999999944
No 396
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=57.19 E-value=4.1 Score=35.87 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 15 ~~i~v~G~~~~GKssli~ 32 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLIT 32 (179)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 334444999999999964
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=57.16 E-value=4.4 Score=35.23 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=12.9
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-.|++|+|||||..
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVL 24 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34444999999999953
No 398
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.86 E-value=4.4 Score=41.20 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.3
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.| ...|. |++|||||||.-
T Consensus 24 ~g-~~~i~--G~NGsGKS~ll~ 42 (322)
T 1e69_A 24 DR-VTAIV--GPNGSGKSNIID 42 (322)
T ss_dssp SS-EEEEE--CCTTTCSTHHHH
T ss_pred CC-cEEEE--CCCCCcHHHHHH
Confidence 35 67777 999999999954
No 399
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=56.80 E-value=4.4 Score=37.21 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=13.5
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||..
T Consensus 25 ki~~v--G~~~vGKSsli~ 41 (190)
T 1m2o_B 25 KLLFL--GLDNAGKTTLLH 41 (190)
T ss_dssp EEEEE--ESTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 45555 999999999954
No 400
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=56.62 E-value=4.4 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
++|+...+. ||+|+|||||.-
T Consensus 605 ~~g~i~~It--GpNGsGKSTlLr 625 (800)
T 1wb9_A 605 PQRRMLIIT--GPNMGGKSTYMR 625 (800)
T ss_dssp SSSCEEEEE--CCTTSSHHHHHH
T ss_pred CCCcEEEEE--CCCCCChHHHHH
Confidence 568888888 999999999944
No 401
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=56.56 E-value=4.6 Score=35.86 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=13.3
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 19 ~ki~v~G~~~~GKSsli~ 36 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTL 36 (187)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 334444999999999954
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=56.52 E-value=4.2 Score=37.90 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=13.0
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-.|.+|+|||||..
T Consensus 32 ~i~i~G~~g~GKTTl~~ 48 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIE 48 (221)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 33444999999999964
No 403
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=56.50 E-value=4.6 Score=40.30 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.4
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|+.. ++..++.||||||++.
T Consensus 4 ~g~l~-I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 4 RGRLK-VFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCCEE-EEEESSTTSSHHHHHH
T ss_pred CceEE-EEEECCCCCcHHHHHH
Confidence 46543 4445899999999966
No 404
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=56.47 E-value=4.3 Score=47.08 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=14.5
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..+|. ||+|||||+||..
T Consensus 590 ~vLl~--Gp~GtGKT~lA~~ 607 (854)
T 1qvr_A 590 SFLFL--GPTGVGKTELAKT 607 (854)
T ss_dssp EEEEB--SCSSSSHHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHHH
Confidence 45555 9999999999863
No 405
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=56.29 E-value=4.6 Score=36.69 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.1
Q ss_pred EEEEEeEcCCccchhhhc
Q psy13077 284 KKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLa 301 (630)
...+. ||.|+|||||.
T Consensus 25 ~~~I~--G~NGsGKStil 40 (149)
T 1f2t_A 25 INLII--GQNGSGKSSLL 40 (149)
T ss_dssp EEEEE--CCTTSSHHHHH
T ss_pred eEEEE--CCCCCCHHHHH
Confidence 55666 99999999983
No 406
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=56.18 E-value=4.6 Score=36.41 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=14.0
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++..|.+|+|||||..
T Consensus 22 ~ki~vvG~~~~GKSsli~ 39 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 344445999999999965
No 407
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=56.03 E-value=4.2 Score=38.06 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=18.6
Q ss_pred EeEcCCccchhhhcc--cCCCCCCCeeEEeecc
Q psy13077 288 AAAFPSACGKTNLAM--LNPTLPGYKVECVGDD 318 (630)
Q Consensus 288 ~~afpSg~GKTtLam--~~p~~pgwk~~lIGDD 318 (630)
.-.|.+|+|||||.. +.-.....++.+|++|
T Consensus 42 ~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 42 DFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 334999999999965 1010112456677665
No 408
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=55.69 E-value=2.4 Score=49.14 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.2
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
++..++. ||+|||||+||-+
T Consensus 511 ~~~vLL~--GppGtGKT~Laka 530 (806)
T 1ypw_A 511 SKGVLFY--GPPGCGKTLLAKA 530 (806)
T ss_dssp CCCCCCB--CCTTSSHHHHHHH
T ss_pred CceeEEE--CCCCCCHHHHHHH
Confidence 4456777 9999999999863
No 409
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=55.62 E-value=4.8 Score=35.71 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 13 ~ki~v~G~~~~GKSsli~ 30 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVL 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 344445999999999953
No 410
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=55.54 E-value=4.1 Score=45.21 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCEEEEEeEcCCccchhhhccc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam~ 303 (630)
+...+++ |+|||||||+|.+
T Consensus 372 ~~~I~l~--G~~GsGKSTia~~ 391 (546)
T 2gks_A 372 GFCVWLT--GLPCAGKSTIAEI 391 (546)
T ss_dssp CEEEEEE--CSTTSSHHHHHHH
T ss_pred ceEEEcc--CCCCCCHHHHHHH
Confidence 4455566 9999999999873
No 411
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=55.50 E-value=4.5 Score=43.51 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=12.9
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-.|+||+|||||.-
T Consensus 71 ~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFIN 87 (413)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 34444999999999953
No 412
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=55.45 E-value=3.8 Score=39.30 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.8
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.++. |+|||||||+|.
T Consensus 2 ilV~--Gg~~SGKS~~A~ 17 (180)
T 1c9k_A 2 ILVT--GGARSGKSRHAE 17 (180)
T ss_dssp EEEE--ECTTSSHHHHHH
T ss_pred EEEE--CCCCCcHHHHHH
Confidence 3566 999999999998
No 413
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=55.16 E-value=3.3 Score=49.36 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.8
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
..|+..-+. ||||||||||.-
T Consensus 697 ~~GeivaIi--GpNGSGKSTLLk 717 (986)
T 2iw3_A 697 SLSSRIAVI--GPNGAGKSTLIN 717 (986)
T ss_dssp ETTCEEEEC--SCCCHHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 458877777 999999999965
No 414
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=55.06 E-value=5 Score=35.67 Aligned_cols=15 Identities=33% Similarity=0.211 Sum_probs=12.3
Q ss_pred EEeEcCCccchhhhc
Q psy13077 287 IAAAFPSACGKTNLA 301 (630)
Q Consensus 287 f~~afpSg~GKTtLa 301 (630)
++-.|++|+|||||.
T Consensus 8 i~~~G~~~~GKssl~ 22 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLL 22 (186)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 444499999999996
No 415
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=55.06 E-value=3.7 Score=41.70 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.3
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
+-.|+||+|||||.-
T Consensus 22 ~lvG~nG~GKSTLl~ 36 (301)
T 2qnr_A 22 MVVGESGLGKSTLIN 36 (301)
T ss_dssp EEEEETTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 444999999999954
No 416
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=55.00 E-value=4.4 Score=38.98 Aligned_cols=17 Identities=24% Similarity=0.075 Sum_probs=14.4
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..+|+ |+.|||||++|+
T Consensus 7 i~l~t--G~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLIT--GTPGSGKTLKMV 23 (199)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred EEEEE--eCCCCCHHHHHH
Confidence 35677 999999999987
No 417
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=54.86 E-value=5.1 Score=35.52 Aligned_cols=18 Identities=28% Similarity=0.143 Sum_probs=13.8
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 11 ~~i~v~G~~~~GKssli~ 28 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLV 28 (180)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 344445999999999964
No 418
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=54.81 E-value=5 Score=36.36 Aligned_cols=19 Identities=32% Similarity=0.153 Sum_probs=14.1
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||.-
T Consensus 25 ~~ki~v~G~~~~GKSsLi~ 43 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLS 43 (193)
T ss_dssp EEEEEEESSTTSSHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHH
Confidence 3444555999999999964
No 419
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=54.79 E-value=4.3 Score=36.21 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=12.6
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 21 i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 21 ILILGLDGAGKTTILY 36 (183)
T ss_dssp EEEEEETTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3334999999999965
No 420
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=54.73 E-value=4.8 Score=44.30 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=14.1
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..++-.|++||||||+|.
T Consensus 36 ~lIvlvGlpGSGKSTia~ 53 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISK 53 (520)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 344445999999999987
No 421
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=54.71 E-value=4.6 Score=44.56 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=23.9
Q ss_pred EEEEEeEcCCccchhhhcccCC-C--CCCCeeEEeeccE
Q psy13077 284 KKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGDDI 319 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~~p-~--~pgwk~~lIGDDi 319 (630)
...++-+|+.|+|||||+..-- . ..|.+|-+|..|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 3445555999999999986210 0 1277888888874
No 422
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=54.69 E-value=4.8 Score=35.99 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=13.6
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 11 ~ki~v~G~~~~GKSsli~ 28 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLH 28 (186)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 334445999999999964
No 423
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=54.56 E-value=4.4 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=18.9
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|.|+..-++ |+||||||||..+
T Consensus 666 ~~GeivaI~--G~nGSGKSTLl~~ 687 (993)
T 2ygr_A 666 PLGVLTSVT--GVSGSGKSTLVND 687 (993)
T ss_dssp ESSSEEEEE--CSTTSSHHHHHTT
T ss_pred CCCCEEEEE--cCCCCCHHHHHHH
Confidence 678887777 9999999999863
No 424
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=54.42 E-value=5.1 Score=35.68 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.0
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-.|++|+|||||.-
T Consensus 6 ki~v~G~~~~GKSsli~ 22 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTI 22 (189)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34445999999999954
No 425
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=54.31 E-value=5.2 Score=35.18 Aligned_cols=18 Identities=17% Similarity=-0.077 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 16 ~~i~v~G~~~~GKSsli~ 33 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLH 33 (179)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 344445999999999954
No 426
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=54.26 E-value=4.9 Score=43.64 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=14.3
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+...+. |+.|+||||||.
T Consensus 148 ~~v~I~--G~~GiGKTtLa~ 165 (591)
T 1z6t_A 148 GWVTIH--GMAGCGKSVLAA 165 (591)
T ss_dssp EEEEEE--CCTTSSHHHHHH
T ss_pred ceEEEE--cCCCCCHHHHHH
Confidence 344455 999999999986
No 427
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=54.22 E-value=5.2 Score=35.83 Aligned_cols=18 Identities=28% Similarity=0.061 Sum_probs=13.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 15 ~ki~vvG~~~~GKssL~~ 32 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLK 32 (198)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 444455999999999953
No 428
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=54.09 E-value=5.1 Score=43.56 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=23.2
Q ss_pred EEEEeEcCCccchhhhcccCC---CCCCCeeEEeeccE
Q psy13077 285 KYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGDDI 319 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam~~p---~~pgwk~~lIGDDi 319 (630)
..+.-+|++|+||||++.--. ...|.+|-+|.-|.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 444445999999999876110 01477888887663
No 429
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=54.08 E-value=5.4 Score=43.01 Aligned_cols=34 Identities=24% Similarity=0.033 Sum_probs=21.9
Q ss_pred EEEeEcCCccchhhhcccCC-C--CC-CCeeEEeeccE
Q psy13077 286 YIAAAFPSACGKTNLAMLNP-T--LP-GYKVECVGDDI 319 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam~~p-~--~p-gwk~~lIGDDi 319 (630)
.++.+|++|+||||++.--. . .. |.+|-+|--|.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 33334899999999987211 0 12 77777776664
No 430
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=54.01 E-value=4.7 Score=36.41 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=13.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||.-
T Consensus 25 ~i~v~--G~~~~GKSsli~ 41 (195)
T 1svi_A 25 EIALA--GRSNVGKSSFIN 41 (195)
T ss_dssp EEEEE--EBTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 34444 999999999964
No 431
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=53.98 E-value=5.4 Score=40.59 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.4
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
...+|. ||.|||||.||+
T Consensus 105 n~~~l~--GppgtGKt~~a~ 122 (267)
T 1u0j_A 105 NTIWLF--GPATTGKTNIAE 122 (267)
T ss_dssp CEEEEE--CSTTSSHHHHHH
T ss_pred cEEEEE--CCCCCCHHHHHH
Confidence 356777 999999999998
No 432
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=53.83 E-value=6.3 Score=35.63 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=14.7
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+..-++-.|++|+|||||..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~ 38 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTY 38 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHH
Confidence 34445555999999999953
No 433
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=53.70 E-value=5.6 Score=45.25 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.1
Q ss_pred EEEEEeEcCCccchhhhccc
Q psy13077 284 KKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~ 303 (630)
..+|. ||+|||||+||..
T Consensus 523 ~~Ll~--Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFL--GPTGVGKTELARA 540 (758)
T ss_dssp EEEEE--SCTTSSHHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHHH
Confidence 46666 9999999999874
No 434
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=53.68 E-value=5.4 Score=35.39 Aligned_cols=17 Identities=35% Similarity=0.227 Sum_probs=13.4
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||..
T Consensus 10 ki~v~--G~~~~GKssl~~ 26 (182)
T 3bwd_D 10 KCVTV--GDGAVGKTCLLI 26 (182)
T ss_dssp EEEEE--CSTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 34555 999999999964
No 435
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=53.21 E-value=5.1 Score=35.84 Aligned_cols=16 Identities=31% Similarity=0.235 Sum_probs=12.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+. |++|+|||||.-
T Consensus 4 i~v~--G~~~~GKSsli~ 19 (190)
T 2cxx_A 4 IIFA--GRSNVGKSTLIY 19 (190)
T ss_dssp EEEE--EBTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 3445 999999999965
No 436
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=53.06 E-value=5.2 Score=36.29 Aligned_cols=17 Identities=29% Similarity=0.120 Sum_probs=13.0
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-.|++|+|||||..
T Consensus 18 ki~ivG~~~vGKSsL~~ 34 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLK 34 (181)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 33444999999999965
No 437
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=52.90 E-value=5.2 Score=43.01 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=13.4
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-.|++||||||++.
T Consensus 41 ~IvlvGlpGsGKSTia~ 57 (469)
T 1bif_A 41 LIVMVGLPARGKTYISK 57 (469)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 33444999999999986
No 438
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=52.89 E-value=4.7 Score=37.32 Aligned_cols=17 Identities=29% Similarity=0.145 Sum_probs=13.3
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||..
T Consensus 27 ki~lv--G~~~vGKSsLi~ 43 (198)
T 1f6b_A 27 KLVFL--GLDNAGKTTLLH 43 (198)
T ss_dssp EEEEE--EETTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 34455 999999999965
No 439
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=52.89 E-value=5.2 Score=39.35 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=12.6
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|||||||.-
T Consensus 6 i~lvG~~g~GKTTL~n 21 (271)
T 3k53_A 6 VALVGNPNVGKTTIFN 21 (271)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3445999999999954
No 440
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=52.81 E-value=6.8 Score=35.39 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=14.3
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|.+|+|||||..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~ 35 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIIN 35 (199)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3444445999999999965
No 441
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=52.71 E-value=6.7 Score=36.24 Aligned_cols=19 Identities=26% Similarity=0.099 Sum_probs=14.6
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~ 41 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAG 41 (195)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHH
Confidence 3445556999999999964
No 442
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=52.67 E-value=5.7 Score=35.80 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=13.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 17 ~ki~v~G~~~~GKSsli~ 34 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLL 34 (196)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 344455999999999954
No 443
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=52.52 E-value=5.5 Score=45.33 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.5
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
-.++. ||+|||||++|-
T Consensus 203 ~vLL~--G~pGtGKT~la~ 219 (758)
T 3pxi_A 203 NPVLI--GEPGVGKTAIAE 219 (758)
T ss_dssp EEEEE--SCTTTTTHHHHH
T ss_pred CeEEE--CCCCCCHHHHHH
Confidence 46777 999999999975
No 444
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=52.21 E-value=5.8 Score=35.39 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=12.5
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||.-
T Consensus 10 i~v~G~~~~GKSsli~ 25 (208)
T 3clv_A 10 TVLLGESSVGKSSIVL 25 (208)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3444999999999953
No 445
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=52.19 E-value=5.8 Score=36.19 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~ 39 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTV 39 (187)
T ss_dssp EEEEEEECCTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3444445999999999964
No 446
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=52.05 E-value=5.5 Score=38.24 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=21.8
Q ss_pred EEEEEeEcCCccchhhhcccCC---CCCCCeeEEeeccE
Q psy13077 284 KKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGDDI 319 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~~p---~~pgwk~~lIGDDi 319 (630)
...++..|..|+|||||+..-- . .|.++-+|--|.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 3555556999999999977210 1 255566655443
No 447
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=51.97 E-value=5.5 Score=35.58 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=6.7
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 11 i~v~G~~~~GKssl~~ 26 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLF 26 (183)
T ss_dssp EEEECCCCC-------
T ss_pred EEEECCCCCCHHHHHH
Confidence 4444999999999954
No 448
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=51.93 E-value=5.2 Score=35.55 Aligned_cols=18 Identities=17% Similarity=0.133 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|.+|+|||||..
T Consensus 8 ~ki~~vG~~~vGKTsli~ 25 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIH 25 (178)
T ss_dssp EEEEEECCGGGCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 334444999999999965
No 449
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=51.88 E-value=6 Score=35.52 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 19 ~~i~v~G~~~~GKssl~~ 36 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILK 36 (186)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 334444999999999965
No 450
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=51.83 E-value=6 Score=35.96 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=13.8
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 22 ~ki~v~G~~~~GKSsli~ 39 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLL 39 (191)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 344555999999999964
No 451
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=51.72 E-value=6 Score=35.79 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=13.6
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 23 ~ki~vvG~~~~GKSsli~ 40 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLF 40 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 344445999999999964
No 452
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=51.64 E-value=8.5 Score=35.87 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=15.0
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
...-++-.|.+|+|||||.-
T Consensus 14 ~~~ki~v~G~~~~GKSsli~ 33 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVK 33 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHH
Confidence 34445555999999999966
No 453
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=51.63 E-value=5.7 Score=36.11 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=12.7
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++++|||||..
T Consensus 26 i~v~G~~~~GKSsli~ 41 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLF 41 (191)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 4444999999999964
No 454
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=51.62 E-value=8 Score=35.09 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=14.0
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 14 ~~ki~v~G~~~~GKSsli~ 32 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTL 32 (206)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHH
Confidence 3444445999999999954
No 455
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=51.56 E-value=5.7 Score=35.86 Aligned_cols=19 Identities=42% Similarity=0.417 Sum_probs=14.0
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 7 ~~ki~v~G~~~vGKSsli~ 25 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLH 25 (184)
T ss_dssp EEEEEEEESTTSSHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHH
Confidence 3344445999999999964
No 456
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=51.50 E-value=5.5 Score=47.11 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=17.7
Q ss_pred CCCCEEEEEeEcCCccchhhhc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLA 301 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLa 301 (630)
++|+...+. ||+|+|||||-
T Consensus 671 ~~g~i~~It--GPNGaGKSTlL 690 (918)
T 3thx_B 671 DSERVMIIT--GPNMGGKSSYI 690 (918)
T ss_dssp TSCCEEEEE--SCCCHHHHHHH
T ss_pred CCCeEEEEE--CCCCCchHHHH
Confidence 568888888 99999999994
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.06 E-value=5.2 Score=50.36 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.2
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
|.|+.+.++ |++||||||||+
T Consensus 381 ~~G~lilI~--G~pGsGKTtLaL 401 (1706)
T 3cmw_A 381 PMGRIVEIY--GPESSGKTTLTL 401 (1706)
T ss_dssp ETTSEEEEE--CSTTSSHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHH
Confidence 578899999 999999999987
No 458
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=50.74 E-value=6.3 Score=35.98 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=13.0
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-.|++|+|||||..
T Consensus 10 ki~v~G~~~~GKSsli~ 26 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLF 26 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34444999999999963
No 459
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=50.62 E-value=6.3 Score=44.69 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
+.-.++. ||+|||||+|+.
T Consensus 207 ~~~vlL~--G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLV--GESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEE--CCTTSSHHHHHH
T ss_pred CCCeEEE--cCCCCCHHHHHH
Confidence 4456777 999999999975
No 460
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=50.58 E-value=6.3 Score=36.39 Aligned_cols=17 Identities=24% Similarity=0.081 Sum_probs=13.3
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||..
T Consensus 9 ki~vv--G~~~~GKTsli~ 25 (214)
T 2fh5_B 9 AVLFV--GLCDSGKTLLFV 25 (214)
T ss_dssp EEEEE--CSTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 34455 999999999964
No 461
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.52 E-value=4.2 Score=43.81 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=22.4
Q ss_pred EEEEEeEcCCccchhhhcccCC-C--CCCCeeEEeeccE
Q psy13077 284 KKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGDDI 319 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam~~p-~--~pgwk~~lIGDDi 319 (630)
...|+ |++|+|||||+..-. . ..|+++-+|.-|.
T Consensus 101 vI~iv--G~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 101 VILLV--GIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CEEEE--CCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred EEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 44455 899999999986211 0 1256787777764
No 462
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=50.49 E-value=5.2 Score=51.13 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.1
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ ||+|||||+||+
T Consensus 1425 ~~g~~vll~--GppGtGKT~LA~ 1445 (2050)
T 3cmu_A 1425 PMGRIVEIY--GPESSGKTTLTL 1445 (2050)
T ss_dssp ETTSEEEEE--CCTTSSHHHHHH
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 568889999 999999999996
No 463
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=50.25 E-value=4.2 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=18.5
Q ss_pred CCCCEEEEEeEcCCccchhhhccc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|.|+..-++ |+||||||||..+
T Consensus 648 ~~Geiv~I~--G~nGSGKSTLl~~ 669 (972)
T 2r6f_A 648 PLGTFVAVT--GVSGSGKSTLVNE 669 (972)
T ss_dssp ESSSEEECC--BCTTSSHHHHHTT
T ss_pred cCCCEEEEE--cCCCCCHHHHHHH
Confidence 678777777 9999999999864
No 464
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=50.14 E-value=6.2 Score=35.75 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 22 ~ki~v~G~~~~GKSsli~ 39 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIIN 39 (190)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 334444999999999964
No 465
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=49.90 E-value=6.3 Score=39.47 Aligned_cols=17 Identities=35% Similarity=0.169 Sum_probs=13.3
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-+|.++||||||--
T Consensus 5 kI~lvG~~nvGKSTL~n 21 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFN 21 (272)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34455999999999954
No 466
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=49.66 E-value=6.5 Score=45.88 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=17.9
Q ss_pred cccCCCCCEEEEEeEcCCccchhhhccc
Q psy13077 276 GITNPEGQKKYIAAAFPSACGKTNLAML 303 (630)
Q Consensus 276 gv~~p~G~~~~f~~afpSg~GKTtLam~ 303 (630)
|+.-|.| .+++ ||.|||||.||..
T Consensus 507 g~~~~~g--vLl~--GPPGtGKT~lAka 530 (806)
T 3cf2_A 507 GMTPSKG--VLFY--GPPGCGKTLLAKA 530 (806)
T ss_dssp CCCCCSC--CEEE--SSTTSSHHHHHHH
T ss_pred CCCCCce--EEEe--cCCCCCchHHHHH
Confidence 3333444 7788 9999999999864
No 467
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=49.65 E-value=6.3 Score=45.64 Aligned_cols=19 Identities=21% Similarity=0.266 Sum_probs=16.6
Q ss_pred CCEEEEEeEcCCccchhhhcc
Q psy13077 282 GQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 282 G~~~~f~~afpSg~GKTtLam 302 (630)
|+...+. ||+|+|||||.-
T Consensus 576 g~i~~I~--GpNGsGKSTlLr 594 (765)
T 1ewq_A 576 HELVLIT--GPNMAGKSTFLR 594 (765)
T ss_dssp SCEEEEE--SCSSSSHHHHHH
T ss_pred CcEEEEE--CCCCCChHHHHH
Confidence 7888888 999999999944
No 468
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=49.33 E-value=6.4 Score=35.87 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=14.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 23 ~~ki~vvG~~~~GKSsli~ 41 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVC 41 (192)
T ss_dssp EEEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHH
Confidence 3445555999999999964
No 469
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=49.31 E-value=6.7 Score=46.86 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=17.2
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
+|+...++ ||+|+|||||.-
T Consensus 788 ~g~i~~It--GpNgsGKSTlLr 807 (1022)
T 2o8b_B 788 KAYCVLVT--GPNMGGKSTLMR 807 (1022)
T ss_dssp CCCEEEEE--CCTTSSHHHHHH
T ss_pred CCcEEEEE--CCCCCChHHHHH
Confidence 47888888 999999999944
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=49.22 E-value=6.9 Score=35.71 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=13.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||..
T Consensus 30 ki~v~--G~~~vGKSsli~ 46 (196)
T 2atv_A 30 KLAIF--GRAGVGKSALVV 46 (196)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 34444 999999999964
No 471
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=49.08 E-value=8.1 Score=36.91 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=14.9
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
...-++-.|+||+|||||.-
T Consensus 28 ~~~~i~lvG~~g~GKStlin 47 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGN 47 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34445555999999999964
No 472
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=48.94 E-value=8.5 Score=35.12 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=14.3
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~ 44 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLME 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3444555999999999965
No 473
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=48.93 E-value=6.7 Score=35.42 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=13.3
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..+. |++|+|||||..
T Consensus 18 ~i~v~--G~~~~GKssl~~ 34 (187)
T 1zj6_A 18 KVIIV--GLDNAGKTTILY 34 (187)
T ss_dssp EEEEE--ESTTSSHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 34444 999999999965
No 474
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=48.65 E-value=6.7 Score=35.95 Aligned_cols=17 Identities=18% Similarity=0.086 Sum_probs=12.7
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-.|.+|+|||||..
T Consensus 22 ki~~vG~~~vGKTsLi~ 38 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQK 38 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 33344999999999943
No 475
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=48.57 E-value=7.2 Score=35.42 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=13.9
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|.+|+|||||..
T Consensus 24 ~ki~~vG~~~~GKSsl~~ 41 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLL 41 (194)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 444555999999999964
No 476
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=48.57 E-value=6.7 Score=35.95 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=14.5
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++++|||||.-
T Consensus 33 ~~ki~vvG~~~~GKSsli~ 51 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLL 51 (199)
T ss_dssp EEEEEEECCTTSCCTTTTT
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3445555999999999954
No 477
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=48.55 E-value=7.3 Score=34.96 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 16 ~~i~v~G~~~~GKssli~ 33 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLL 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 334445999999999854
No 478
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=48.46 E-value=6.6 Score=42.66 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.2
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|++..+| +++|||||+|++
T Consensus 174 rGQR~lIf--g~~g~GKT~Ll~ 193 (427)
T 3l0o_A 174 KGQRGMIV--APPKAGKTTILK 193 (427)
T ss_dssp TTCEEEEE--ECTTCCHHHHHH
T ss_pred CCceEEEe--cCCCCChhHHHH
Confidence 58899999 999999999985
No 479
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=48.26 E-value=6.8 Score=36.10 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=13.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~ 43 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLH 43 (200)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 344445999999999964
No 480
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=48.11 E-value=6.3 Score=35.48 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=14.1
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 21 ~~~i~v~G~~~~GKSsli~ 39 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILY 39 (181)
T ss_dssp CEEEEEEEETTSSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHH
Confidence 3444445999999999965
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=48.04 E-value=7.2 Score=37.08 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=13.8
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
...+. ||+|||||||.-
T Consensus 25 ~~~I~--G~NgsGKStil~ 41 (203)
T 3qks_A 25 INLII--GQNGSGKSSLLD 41 (203)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred eEEEE--cCCCCCHHHHHH
Confidence 56666 999999999943
No 482
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=47.99 E-value=7.4 Score=41.82 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.3
Q ss_pred EeEcCCccchhhhcc
Q psy13077 288 AAAFPSACGKTNLAM 302 (630)
Q Consensus 288 ~~afpSg~GKTtLam 302 (630)
+-.|+||+|||||.-
T Consensus 35 ~lvG~sGaGKSTLln 49 (418)
T 2qag_C 35 MVVGESGLGKSTLIN 49 (418)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCcHHHHHH
Confidence 445999999999964
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=47.95 E-value=7.4 Score=35.44 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=12.9
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-.|++|+|||||..
T Consensus 22 ki~~~G~~~~GKssl~~ 38 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVV 38 (201)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 33444999999999954
No 484
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=47.93 E-value=7.4 Score=35.46 Aligned_cols=19 Identities=26% Similarity=0.092 Sum_probs=14.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||..
T Consensus 8 ~~ki~v~G~~~~GKSsli~ 26 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMN 26 (207)
T ss_dssp EEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHH
Confidence 3444445999999999964
No 485
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=47.79 E-value=7 Score=36.55 Aligned_cols=19 Identities=26% Similarity=0.055 Sum_probs=14.2
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
..-++-.|++|+|||||.-
T Consensus 26 ~~ki~lvG~~~vGKSsLi~ 44 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVR 44 (201)
T ss_dssp EEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHH
Confidence 3444445999999999964
No 486
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=47.78 E-value=7.5 Score=35.27 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 23 ~ki~v~G~~~~GKSsli~ 40 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVN 40 (188)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 334445999999999954
No 487
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=47.78 E-value=7.4 Score=36.01 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=13.7
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++++|||||..
T Consensus 26 ~ki~vvG~~~~GKSsLi~ 43 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLY 43 (217)
T ss_dssp EEEEEESCTTSSHHHHHH
T ss_pred EEEEEECcCCCCHHHHHH
Confidence 344445999999999964
No 488
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=47.76 E-value=7.5 Score=35.62 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=13.4
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 29 ~ki~v~G~~~~GKSsli~ 46 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLM 46 (199)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 334444999999999964
No 489
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=47.60 E-value=7.6 Score=35.56 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=13.0
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++-.|++++|||||..
T Consensus 22 ~i~v~G~~~~GKSsli~ 38 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLV 38 (213)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 33444999999999964
No 490
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=47.34 E-value=5.8 Score=44.11 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.7
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
.|++..+| +++|||||+|++
T Consensus 174 rGQR~~I~--g~~g~GKT~Lal 193 (515)
T 2r9v_A 174 RGQRELII--GDRQTGKTAIAI 193 (515)
T ss_dssp TTCBEEEE--EETTSSHHHHHH
T ss_pred cCCEEEEE--cCCCCCccHHHH
Confidence 58899999 999999999963
No 491
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=47.34 E-value=5.7 Score=37.85 Aligned_cols=17 Identities=24% Similarity=0.090 Sum_probs=14.0
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
.++-.|++||||||++-
T Consensus 8 iI~i~g~~GsGk~ti~~ 24 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAK 24 (201)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEeCCCCCCHHHHHH
Confidence 45555999999999987
No 492
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=47.25 E-value=8.3 Score=38.00 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=15.9
Q ss_pred CCCEEEEEeEcCCccchhhhcc
Q psy13077 281 EGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 281 ~G~~~~f~~afpSg~GKTtLam 302 (630)
+|...-++-.|.||+|||||.-
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin 26 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLIN 26 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHHH
Confidence 3555556667999999999973
No 493
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=47.14 E-value=8.8 Score=35.22 Aligned_cols=20 Identities=25% Similarity=0.193 Sum_probs=14.6
Q ss_pred CEEEEEeEcCCccchhhhcc
Q psy13077 283 QKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 283 ~~~~f~~afpSg~GKTtLam 302 (630)
+..-++-.|.+|+|||||.-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~ 42 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAH 42 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHH
Confidence 34444445999999999964
No 494
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=46.90 E-value=5.4 Score=37.05 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.3
Q ss_pred EEEEEeEcCCccchhhhcc
Q psy13077 284 KKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 284 ~~~f~~afpSg~GKTtLam 302 (630)
+..++ |.+|+|||||.-
T Consensus 31 ~i~v~--G~~~~GKSslin 47 (223)
T 4dhe_A 31 EIAFA--GRSNAGKSTAIN 47 (223)
T ss_dssp EEEEE--ESCHHHHHHHHH
T ss_pred EEEEE--cCCCCCHHHHHH
Confidence 34444 999999999965
No 495
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=46.69 E-value=7.4 Score=35.98 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=12.8
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
..+. |++|+|||||..
T Consensus 28 i~vv--G~~~~GKSsli~ 43 (207)
T 2fv8_A 28 LVVV--GDGACGKTCLLI 43 (207)
T ss_dssp EEEE--ECTTSSHHHHHH
T ss_pred EEEE--CcCCCCHHHHHH
Confidence 4444 999999999964
No 496
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=46.67 E-value=5.5 Score=44.58 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=12.6
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|+||||||||.-
T Consensus 48 iaIvG~nGsGKSTLL~ 63 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLE 63 (608)
T ss_dssp EECCCCTTSCHHHHHH
T ss_pred EEEECCCCChHHHHHH
Confidence 4444999999999953
No 497
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=46.58 E-value=8.5 Score=36.33 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=13.1
Q ss_pred EEEeEcCCccchhhhcc
Q psy13077 286 YIAAAFPSACGKTNLAM 302 (630)
Q Consensus 286 ~f~~afpSg~GKTtLam 302 (630)
-++..|++|+|||||.-
T Consensus 31 kI~vvG~~~vGKSsLin 47 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMN 47 (228)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 33344999999999965
No 498
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=46.38 E-value=7.7 Score=45.97 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.9
Q ss_pred CCCCEEEEEeEcCCccchhhhcc
Q psy13077 280 PEGQKKYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 280 p~G~~~~f~~afpSg~GKTtLam 302 (630)
+.|+...++ ||+|+|||||.-
T Consensus 660 ~~g~i~~It--GpNGsGKSTlLr 680 (934)
T 3thx_A 660 DKQMFHIIT--GPNMGGKSTYIR 680 (934)
T ss_dssp TTBCEEEEE--CCTTSSHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 568888888 999999999953
No 499
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=46.31 E-value=7.7 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=12.7
Q ss_pred EEeEcCCccchhhhcc
Q psy13077 287 IAAAFPSACGKTNLAM 302 (630)
Q Consensus 287 f~~afpSg~GKTtLam 302 (630)
++-.|++|+|||||..
T Consensus 32 i~v~G~~~vGKSsLi~ 47 (192)
T 2b6h_A 32 ILMVGLDAAGKTTILY 47 (192)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3334999999999965
No 500
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=46.19 E-value=7.7 Score=35.57 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=13.5
Q ss_pred EEEEeEcCCccchhhhcc
Q psy13077 285 KYIAAAFPSACGKTNLAM 302 (630)
Q Consensus 285 ~~f~~afpSg~GKTtLam 302 (630)
.-++-.|++|+|||||..
T Consensus 9 ~ki~v~G~~~~GKSsli~ 26 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLL 26 (206)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 334445999999999964
Done!