RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13077
(630 letters)
>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase. catalyzes the
formation of phosphoenolpyruvate by decarboxylation of
oxaloacetate.
Length = 586
Score = 1066 bits (2760), Expect = 0.0
Identities = 375/598 (62%), Positives = 445/598 (74%), Gaps = 17/598 (2%)
Query: 35 SFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVA 92
++ ELCQP V+ICDGSE EY L V+ L P+ K+ NC+LAR++P+DVA
Sbjct: 1 EWVAEVAELCQPDRVYICDGSEEEYDRLRKKAVEAGELIPLNEEKHPNCYLARSDPSDVA 60
Query: 93 RVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFS 152
RVES+TFICT +K + P NW+ P++ + + + F GCMKGRTMYVIPFS
Sbjct: 61 RVESRTFICTPDKEDAGPTN---------NWMDPEEMKAELRELFKGCMKGRTMYVIPFS 111
Query: 153 MGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKH 212
MGPVGSP SKIGV++TDSPYVV SMRIMTR+G VL+ L D FV+ LHSVG P+
Sbjct: 112 MGPVGSPFSKIGVQLTDSPYVVHSMRIMTRMGFEVLDALGEDGEFVRCLHSVGAPLEPGQ 171
Query: 213 EFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272
+ WPC+P++ I+H P I S+GSGYGGN+LLGKKCFALRI S +A+ EGWLAEHM
Sbjct: 172 KDVNWPCNPDKRYIVHFPEERTIWSFGSGYGGNALLGKKCFALRIASYMARDEGWLAEHM 231
Query: 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRA 332
LILGITNPEG+KKYIAAAFPSACGKTNLAML PTLPG+KVECVGDDIAWMKF ++G LRA
Sbjct: 232 LILGITNPEGRKKYIAAAFPSACGKTNLAMLTPTLPGWKVECVGDDIAWMKFGEDGRLRA 291
Query: 333 INPENGFFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITD 392
INPENGFFGVAPGT+ KTNP AM T+ KNTIFTNVA T DG V+WEGME+E P + D
Sbjct: 292 INPENGFFGVAPGTNEKTNPNAMATLPKNTIFTNVALTDDGDVWWEGMEEE--PPAHLID 349
Query: 393 WHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGRRPQGVPLVY 452
W KPW G AAHPNSRF P +QCP +DP+WE EGVPISAIIFGGRRP VPLVY
Sbjct: 350 WKGKPWTPESGEPAAHPNSRFTAPLAQCPNLDPDWEDPEGVPISAIIFGGRRPDTVPLVY 409
Query: 453 ESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSMEQRTN 512
E+FDW+HGVF+GASM SE TAAAE K V+ HDP AM PF GYN GDYL+HWLSM ++
Sbjct: 410 EAFDWEHGVFIGASMESETTAAAEGKVGVLRHDPMAMLPFCGYNMGDYLQHWLSMGKKG- 468
Query: 513 AKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEAL 572
KLPK+FHVNWFRK G+FLWPGFGEN RVL WILRRVE + A +PIGYIPK E L
Sbjct: 469 KKLPKIFHVNWFRKDEDGKFLWPGFGENKRVLKWILRRVE-GEVDAVETPIGYIPKYEDL 527
Query: 573 ITTNL-ASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQRIK 629
L + D EELFS DK W QEV+ +++Y+ E+ G DLP + E++AL++R+K
Sbjct: 528 NLLGLDLPEEDYEELFSIDKEEWLQEVERIEKYY-EEFGDDLPKELWEELEALEERLK 584
>gnl|CDD|238417 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (GTP) for the
phosphoryl transfer, and has a strict requirement for
divalent metal ions for activity. PEPCK's separate into
two phylogenetic groups based on their nucleotide
substrate specificity, this model describes the
GTP-dependent group.
Length = 579
Score = 1005 bits (2602), Expect = 0.0
Identities = 356/592 (60%), Positives = 428/592 (72%), Gaps = 13/592 (2%)
Query: 33 LKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVA 92
L +++ ELCQP V+ICDGSE EY L DLMV+ + KY N +LAR++P+DVA
Sbjct: 1 LLEWVEEAAELCQPDSVYICDGSEEEYDRLRDLMVEQGEEIRLNKYPNSYLARSDPSDVA 60
Query: 93 RVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFS 152
RVES+TFIC++++ + G NW+ P++ + + + F GCM+GRTMYVIPFS
Sbjct: 61 RVESRTFICSEDEED---------AGPTNNWMDPEEMKAELKELFKGCMRGRTMYVIPFS 111
Query: 153 MGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKH 212
MGP+GSP+SKIGVE+TDSPYVV SMRIMTR+G VL+ L + FV LHSVG P+S
Sbjct: 112 MGPLGSPISKIGVELTDSPYVVHSMRIMTRMGKAVLDAL-GEGEFVPCLHSVGAPLSAGQ 170
Query: 213 EFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272
+ WPC+PE+ I+H P EI S+GSGYGGN+LLGKKCFALRI S +A+ EGWLAEHM
Sbjct: 171 K-DVWPCNPEKKYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVMARDEGWLAEHM 229
Query: 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRA 332
LILG+TNPEG+KKY AAAFPSACGKTNLAML P LPG+KVE VGDDIAWMKF ++G L A
Sbjct: 230 LILGVTNPEGEKKYFAAAFPSACGKTNLAMLIPPLPGWKVETVGDDIAWMKFGEDGRLYA 289
Query: 333 INPENGFFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITD 392
INPE GFFGVAPGT+ KTNP AM T+ KNTIFTNVA T DG V+WEG+ +E ++
Sbjct: 290 INPEAGFFGVAPGTNAKTNPNAMATLHKNTIFTNVALTEDGDVWWEGLTEEPPEHLTDWQ 349
Query: 393 WHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGRRPQGVPLVY 452
K W DG AAHPNSRF PASQCP IDP WE+ EGVPI AIIFGGRRP VPLVY
Sbjct: 350 GLGKRWTPGDGEPAAHPNSRFTAPASQCPNIDPEWENPEGVPIDAIIFGGRRPDTVPLVY 409
Query: 453 ESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSMEQRTN 512
E+F+W HGVF+GASM SE TAAAE K V+ DPFAM PF GYN GDY +HWLS ++
Sbjct: 410 EAFNWNHGVFIGASMGSETTAAAEGKVGVVRRDPFAMLPFCGYNMGDYFRHWLSFGRKLG 469
Query: 513 AKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIPKPEAL 572
AKLPK+F VNWFRK G+FLWPGFGEN RVL WI RRVE K A +PIGYIPK L
Sbjct: 470 AKLPKIFGVNWFRKDEDGKFLWPGFGENSRVLKWIFRRVE-GKANAIETPIGYIPKYGDL 528
Query: 573 ITTNLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDAL 624
L L+ LFS D+ +W QE+ +++ Y + ADLP + E++AL
Sbjct: 529 DLKGL-GKSKLDFLFSVDEDYWLQELIEIEEYLEKIGRADLPQELFDELEAL 579
>gnl|CDD|235256 PRK04210, PRK04210, phosphoenolpyruvate carboxykinase; Provisional.
Length = 601
Score = 926 bits (2395), Expect = 0.0
Identities = 339/603 (56%), Positives = 416/603 (68%), Gaps = 18/603 (2%)
Query: 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNP 88
PKL ++ EL QP V CDGSE EY L D V+ T + K N +LAR++P
Sbjct: 11 PKLLEWVAEVAELTQPDRVVWCDGSEEEYDRLRDQAVEAGTEIKLNPEKRPNSFLARSDP 70
Query: 89 ADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYV 148
+DVARVE +TFIC++++ + G NW+ P + E + F GCM+GRTMYV
Sbjct: 71 SDVARVEDRTFICSEKEED---------AGPTNNWMDPAEMRETLKGLFKGCMRGRTMYV 121
Query: 149 IPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPV 208
+PFSMGP+GSP +KIGVEITDSPYVV SMRIMTR+G VL++L D FV +HSVG P+
Sbjct: 122 VPFSMGPLGSPFAKIGVEITDSPYVVHSMRIMTRMGKAVLDVLGEDGEFVPCVHSVGAPL 181
Query: 209 SGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWL 268
+ WPC+ + I+H P EI SYGSGYGGN+LLGKKCFALRI S +A+ EGWL
Sbjct: 182 EPGQKDVPWPCNDTK-YIVHFPETREIWSYGSGYGGNALLGKKCFALRIASVMARDEGWL 240
Query: 269 AEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEG 328
AEHMLILG+T+PEG+K Y AAAFPSACGKTNLAML P +PG+KVE VGDDIAW++ ++G
Sbjct: 241 AEHMLILGVTSPEGRKTYFAAAFPSACGKTNLAMLIPPIPGWKVETVGDDIAWIRPGEDG 300
Query: 329 VLRAINPENGFFGVAPGTSNKTNPIAMKTVFK-NTIFTNVASTSDGGVYWEGMEDEISPD 387
L AINPE GFFGVAPGT+ KTNP AM T+ N IFTNVA T DG V+WEGM +E P
Sbjct: 301 RLYAINPEAGFFGVAPGTNEKTNPNAMATLKPGNVIFTNVALTDDGDVWWEGMTEEP-PA 359
Query: 388 VSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGRRPQG 447
+ DW W G AAHPN+RF PASQCP +DP WE GVPISAIIFGGRR
Sbjct: 360 -HLIDWQGNDWTPGSGEPAAHPNARFTVPASQCPNLDPEWEDPAGVPISAIIFGGRRSDT 418
Query: 448 VPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSM 507
VPLV E+FDWQHGV++GA+M SE TAAAE K V+ DP AM PF GYN GDY +HWL
Sbjct: 419 VPLVTEAFDWQHGVYMGATMGSETTAAAEGKVGVVRRDPMAMLPFCGYNMGDYFQHWLDF 478
Query: 508 EQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYIP 567
++ +KLPK+F VNWFRK G+FLWPGFGEN+RVL WI+ RVE + E +PIGY+P
Sbjct: 479 GKKLGSKLPKIFGVNWFRKDEDGKFLWPGFGENMRVLKWIVDRVEGEADAVE-TPIGYLP 537
Query: 568 KPEALITTNL-ASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQ 626
K E L L S+ D E+LFS D W E++ ++ F E+ G LP + E++ALK+
Sbjct: 538 KYEDLDLLGLDYSEEDYEKLFSVDVDEWLAELELIEELF-EKFGDRLPKELFEELEALKK 596
Query: 627 RIK 629
R+
Sbjct: 597 RLL 599
>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 810 bits (2094), Expect = 0.0
Identities = 332/604 (54%), Positives = 409/604 (67%), Gaps = 19/604 (3%)
Query: 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNP 88
LKS+I+ EL +P DV +CDGS EY L MV+ + K+ N +LAR+NP
Sbjct: 18 QGLKSWIEEVAELTEPDDVVVCDGSPEEYDYLCWKMVEAGEEIKLNPEKHPNSYLARSNP 77
Query: 89 ADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYV 148
+DVARVE +TFIC+ K G NW+ PQ+ + + F GCM+GRTMYV
Sbjct: 78 SDVARVEERTFICSP---------KEEDAGPTNNWMDPQEMRSEMNELFRGCMRGRTMYV 128
Query: 149 IPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPV 208
+PF MGP+ SP + +GVE+TDSPYVV SMRIMTR+G VL L D FVK +HSVG P+
Sbjct: 129 VPFCMGPLNSPFTILGVELTDSPYVVHSMRIMTRMGKEVLEKLGDDGNFVKCVHSVGKPL 188
Query: 209 SGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWL 268
+ WPC+ E I H P E+ S+GSGYGGN+LLGKKC ALRI S +A+ EGWL
Sbjct: 189 DPGQKDVAWPCN-ETKYIRHFPEDREVWSFGSGYGGNALLGKKCLALRIASVMARDEGWL 247
Query: 269 AEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEG 328
AEHMLILG+TNPEG+K Y AAFPSACGKTNLAM+ PT+PG+K E +GDDIAW+KF K+G
Sbjct: 248 AEHMLILGVTNPEGKKYYFTAAFPSACGKTNLAMIPPTIPGWKAETIGDDIAWIKFGKDG 307
Query: 329 VLRAINPENGFFGVAPGTSNKTNPIAMKTV-FKNTIFTNVASTSDGGVYWEGMEDEISPD 387
L A+NPE GFFGVAPGT+ KTNP AM T+ NTIFTNVA T DG V+WEG+E E P+
Sbjct: 308 RLYAVNPEIGFFGVAPGTNEKTNPNAMATLHSGNTIFTNVALTDDGDVWWEGLEGEP-PE 366
Query: 388 VSITDWHNKPWK-KSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGRRPQ 446
+ DW W+ G AAHPNSRF P SQCP +DP W+ EGVPI AIIFGGRRP
Sbjct: 367 -ELIDWKGNDWRPGETGEPAAHPNSRFTVPLSQCPNLDPEWDDPEGVPIDAIIFGGRRPT 425
Query: 447 GVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLS 506
VPLV E+FDW+HGVF+GA+M SE TAAAE K V+ DP AM PF GYN GDY +HWL
Sbjct: 426 TVPLVTEAFDWEHGVFMGATMGSETTAAAEGKVGVLRRDPMAMLPFCGYNMGDYFRHWLE 485
Query: 507 MEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYI 566
++ KLPK+F VNWFR+G G FLWPGFGEN RVL WI+ R+E + A +PIGYI
Sbjct: 486 FGRKLRDKLPKIFGVNWFRRGEDGRFLWPGFGENSRVLKWIVDRIEGD-ANAIETPIGYI 544
Query: 567 PKPEALITTNL-ASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALK 625
PK E L L S D+E+LF+ D W E++ + Y+ G +P + E++ALK
Sbjct: 545 PKYEDLNLDGLDYSKEDVEKLFTIDAEGWLAEIERIWEYY-SFFGNKIPEELLDELEALK 603
Query: 626 QRIK 629
+R+
Sbjct: 604 ERLG 607
>gnl|CDD|238900 cd01919, PEPCK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP or GTP) for
the phosphoryl transfer, and has a strict requirement
for divalent metal ions for activity. PEPCK's separate
into two phylogenetic groups based on their nucleotide
substrate specificity (the ATP-, and GTP-dependent
groups).
Length = 515
Score = 497 bits (1282), Expect = e-171
Identities = 233/582 (40%), Positives = 303/582 (52%), Gaps = 74/582 (12%)
Query: 48 DVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAE 107
+HI D + R +++++ + LR +N LA T+P D R S I TQ++
Sbjct: 2 HIHINDENGRLLQQMLE---EYGILR---LTKNGALAVTDPRDTGRSPSDKVIVTQDQRR 55
Query: 108 TVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEI 167
TVP K G+ L W+S +D+E+A RFPG MKGRT++V+ F MGP GSPL I E+
Sbjct: 56 TVPIPKTGL-SQLNRWLSEEDFEKAFNARFPGLMKGRTLFVVDFFMGP-GSPLRLIVREL 113
Query: 168 TDSPYVVGSMRIMTRIGT-PVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTII 226
TDSPYV MRIMT + T L P VK L+SVG P+ +WP P T++
Sbjct: 114 TDSPYVAAFMRIMTIMPTDEELAAFG--DPDVKCLNSVGCPL----PLQKWPGLPSLTLV 167
Query: 227 LHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKY 286
H P E + +G+GYGG KK F LR+ S +A EGWLA HM TN +
Sbjct: 168 AHNPDRREQIIFGTGYGG---EMKKGF-LRMMSRLAPEEGWLAMHMSANVGTNGD----V 219
Query: 287 IAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGVAPGT 346
+ S GKT L+M K E +GDD W K D NPE G + A G
Sbjct: 220 LVFFGLSGTGKTTLSMD------PKRELIGDDEHWWKDDG-----VFNPEGGCYAKAIGL 268
Query: 347 SNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQA 406
S KT P K + KN IF NVA TSDGG+ +E +
Sbjct: 269 SVKTEPNIYKAIRKNAIFENVAETSDGGIDFEDIS------------------------- 303
Query: 407 AHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGRRPQGV-PLVYESFDWQHGVFLGA 465
AHPN+R C PAS P ID WES I +IF R GV P VY WQ GVF+ A
Sbjct: 304 AHPNTRVCYPASHIPIIDAAWES--AGHIEGVIFLTRDAFGVVPPVYRLT-WQQGVFVFA 360
Query: 466 SMRSEATAA--AEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSMEQRTNAKLPKVFHVNW 523
+ R+ ATA A HKGK+ M P RPF GY+F YL+H LSM Q LPK+F VN
Sbjct: 361 AGRTAATAGTEAGHKGKIPMFSPCFGRPFLGYHFTKYLEHLLSMMQ---HPLPKIFLVNT 417
Query: 524 FRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPI--GYIPKPEALITTNLASDV 581
RKG +G+F PGFGE ++D I + + E + +PI YIPK L+ +
Sbjct: 418 GRKGKEGKFKRPGFGETRAIIDAIFNGILDKAE-TKLTPIFNLYIPKALNLVGLGHLNPR 476
Query: 582 DLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDA 623
++ ELFS K FW++ V+D ++YF +Q+ A AI+ EI A
Sbjct: 477 NMMELFSQSKEFWDKLVEDFEKYFVDQVNA---CAIEREILA 515
>gnl|CDD|238418 cd00820, PEPCK_HprK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP or GTP) for
the phosphoryl transfer, and has a strict requirement
for divalent metal ions for activity. PEPCK's separate
into two phylogenetic groups based on their nucleotide
substrate specificity (the ATP-, and GTP-dependent
groups).HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates
the utilization of carbon sources by gram-positive
bacteria. It catalyzes both the ATP-dependent
phosphorylation of HPr and its dephosphorylation by
phosphorolysis. PEPCK and the C-terminal catalytic
domain of HprK/P are structurally similar with conserved
active site residues suggesting that these two
phosphotransferases have related functions.
Length = 107
Score = 98.5 bits (245), Expect = 1e-24
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 266 GWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFD 325
G + H +++ + K + S GKT LA+ K VGDD ++ D
Sbjct: 1 GTTSLHGVLVDVYG----KVGVLITGDSGIGKTELALELI---KRKHRLVGDDNVEIRED 53
Query: 326 KEGVLRAINPENGFFGVAPG 345
+ L NPE G
Sbjct: 54 SKDELIGRNPELGLEIRLRL 73
Score = 44.2 bits (104), Expect = 1e-05
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 510 RTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWIL 548
R N L VN +G WPGF +++
Sbjct: 72 RLNIFLITKKTVNVRPGDKEG---WPGFRNVAVIIEVAA 107
>gnl|CDD|233658 TIGR01962, NuoD, NADH dehydrogenase I, D subunit. This model
recognizes specificially the D subunit of NADH
dehydrogenase I complex. It excludes the related chain
of NAD(P)H-quinone oxidoreductases from chloroplast and
Synechocystis, where the quinone may be plastoquinone
rather than ubiquinone. This subunit often appears as a
C/D fusion [Energy metabolism, Electron transport].
Length = 386
Score = 33.1 bits (76), Expect = 0.44
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 488 AMRPFFGYNFGDYLKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIR-VLDW 546
AM PF Y F + K E T A++ H +FR G L + E IR L+
Sbjct: 119 AMTPFL-YAFREREKILDLFEAITGARM----HSAYFRIGGVALDLPENWLEEIREFLEQ 173
Query: 547 ILRRVENNKEIAEASPI--------GYIPKPEAL 572
+R+ + + + + I G + +AL
Sbjct: 174 FPKRLRDYETLLNENRIWKQRTQGVGVVSAKDAL 207
>gnl|CDD|218691 pfam05685, Uma2, Putative restriction endonuclease. This family
consists of hypothetical proteins that are greatly
expanded in cyanobacteria. The proteins are found
sporadically in other bacteria. A small number of member
proteins also contain pfam02861 domains that are
involved in protein interactions. Solutions of several
structures for members of this family show that it is
likely to be acting as an endonuclease.
Length = 113
Score = 30.4 bits (69), Expect = 0.99
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 365 TNVASTSDGGVYWEGMEDEISPDVSITDWHNKPW 398
SD GV E + E PDV++ +
Sbjct: 21 LGRVFGSDTGVRLEPLGSERVPDVAVVLGERREL 54
>gnl|CDD|222722 pfam14381, EDR1, Ethylene-responsive protein kinase Le-CTR1. EDR1
regulates disease resistance and ethylene-induced
senescence, and is also involved in stress response
signalling and cell death regulation.
Length = 203
Score = 29.9 bits (68), Expect = 2.7
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 44 CQPSDVHIC---DGSEREYKELIDLMVKDKTLRP 74
C D REY L+DLM TL P
Sbjct: 172 CGSDDDASNLVKFDDGREY--LVDLMGAPGTLIP 203
>gnl|CDD|216532 pfam01497, Peripla_BP_2, Periplasmic binding protein. This family
includes bacterial periplasmic binding proteins. Several
of which are involved in iron transport.
Length = 236
Score = 30.0 bits (68), Expect = 2.9
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 568 KPEALITTNLASDVDLEE--------LFSFDKSFWEQEVQDL-----QRYFNEQLGADLP 614
KP+ +I + D F+ S + + + + E +L
Sbjct: 60 KPDLIIGSAGIGLTDKAYELLSLIIPTVIFESSSTGEGILEQIRALGELLGLEDEAEELV 119
Query: 615 TAIQAEIDALKQRIKQ 630
+ + IDA K RI
Sbjct: 120 AELDSAIDAAKARIDS 135
>gnl|CDD|234621 PRK00082, hrcA, heat-inducible transcription repressor;
Provisional.
Length = 339
Score = 29.8 bits (68), Expect = 4.0
Identities = 7/47 (14%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 586 LFSFDKSFWEQEVQDLQRYFNEQLG----ADLPTAIQAEIDALKQRI 628
+ + ++++ + NE+L +++ + ++ E+D L+Q
Sbjct: 164 VIELPEGISPSDLEEASNFLNERLVGLTLSEIRSKLRTELDQLRQEY 210
>gnl|CDD|146762 pfam04294, VanW, VanW like protein. Family members include
vancomycin resistance protein W (VanW). Genes encoding
members of this family have been found in vancomycin
resistance gene clusters vanB and vanG. The function of
VanW is unknown.
Length = 132
Score = 28.2 bits (64), Expect = 5.6
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 11/43 (25%)
Query: 9 VFSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVE------LCQ 45
FSFN+ + + + GYV A ++ + +CQ
Sbjct: 24 TFSFNKTVGPRTAEKGYVEA-----PVIVNGKLVDGVGGGICQ 61
>gnl|CDD|215903 pfam00405, Transferrin, Transferrin.
Length = 328
Score = 29.0 bits (65), Expect = 7.2
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 64 DLMVKDKTLRPVPKYENCWLARTNPAD--VARV 94
+L+ D T +PV +Y++C LAR P+ VAR
Sbjct: 223 ELLCPDNTRKPVDEYKDCHLARV-PSHAVVARS 254
>gnl|CDD|179541 PRK03114, PRK03114, NTPase; Reviewed.
Length = 169
Score = 28.4 bits (64), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 342 VAPGTSNKTNPIAMKTVFKNTIFTNVASTSD 372
+A G+ NKT A++ V+K+ T+V+ S
Sbjct: 3 IAVGSKNKTKVGAVEKVWKDAEITSVSVPSG 33
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase
inhibitor.
Length = 537
Score = 29.1 bits (65), Expect = 8.0
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 164 GVEITDSPY---VVGSMRIMTRIGTPVLNL---LDADQPFVKALHSVGTPVSGKHEFPEW 217
G E TD + GS++ +T++ + VL + L + PF + + T + +FPEW
Sbjct: 158 GFEGTDRHLENFIKGSLKQVTQLISNVLAMYTQLHS-LPFKPSRNETET--APSSKFPEW 214
Query: 218 PCDPERTIILHKPAA---NEIVSY-GSGY 242
+ ++ ++ H P + IV+ GSG+
Sbjct: 215 MTEGDQELLKHDPLGMHVDTIVALDGSGH 243
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 28.7 bits (64), Expect = 8.1
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 267 WLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLA----MLNPTLPGYKVE 313
+ E + +T + + A PS CGKT L +N +PG++VE
Sbjct: 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
>gnl|CDD|149922 pfam09015, NgoMIV_restric, NgoMIV restriction enzyme. Members of
this family are prokaryotic DNA restriction enzymes,
exhibiting an alpha/beta structure, with a central
region comprising a mixed six-stranded beta-sheet with
alpha-helices on each side. A long 'arm' protrudes out
of the core of the domain between strands beta2 and
beta3 and is mainly involved in the tetramerisation
interface of the protein. These restriction enzymes
recognise the double-stranded sequence GCCGGC and cleave
after G-1.
Length = 277
Score = 28.6 bits (64), Expect = 8.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 547 ILRRVENNKEIAEASPIGYIPKPEALITTNLASD 580
+ R + N E+A A Y KP+ ++ SD
Sbjct: 108 LARLAKENPELAAALGSDYTIKPDIVVVREPESD 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,176,733
Number of extensions: 3281110
Number of successful extensions: 2853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2809
Number of HSP's successfully gapped: 27
Length of query: 630
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 527
Effective length of database: 6,369,140
Effective search space: 3356536780
Effective search space used: 3356536780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)