RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13077
(630 letters)
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
2fah_A* 2qzy_A*
Length = 608
Score = 782 bits (2020), Expect = 0.0
Identities = 363/610 (59%), Positives = 460/610 (75%), Gaps = 6/610 (0%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
+SA+ + F++ V LC+P +V +CDGSE E KEL+ + D L P+PKY+NCW
Sbjct: 2 STSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCW 61
Query: 83 LARTNPADVARVESKTFICTQEKAETVPDTKP-GVKGTLGNWISPQDYEEAIMQRFPGCM 141
LART+P DVARVESKT + T E+++ VP P G LGNW+SP ++ A+ +RFPGCM
Sbjct: 62 LARTDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGCM 121
Query: 142 KGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKAL 201
GR +YVIPFSMGP SPL+K+GV++TDSPYVV SMRIMTR+G VL LD D FV+ L
Sbjct: 122 AGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVGPAVLQRLDDD--FVRCL 179
Query: 202 HSVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGST 260
HSVG P+ + WPCDP R ++ H P+ IVS+GSGYGGNSLLGKKCFALRI S
Sbjct: 180 HSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASR 239
Query: 261 IAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIA 320
+A+++GWLAEHMLILG+T+P G+K+Y+AAAFPSACGKTNLAM+ P+LPG+++ CVGDDIA
Sbjct: 240 MAQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIA 299
Query: 321 WMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGM 380
WMKFD EG LRAINPE GFFGVAPGTS++TNP AM T+ +NTIFTNV SDGGVYW+G+
Sbjct: 300 WMKFDDEGRLRAINPERGFFGVAPGTSSRTNPNAMATIARNTIFTNVGLRSDGGVYWDGL 359
Query: 381 EDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIF 440
++ P V+ T W KPWK D AHPNSRFC PA QCP +DP W+ EGVPI AIIF
Sbjct: 360 DEPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQCPIMDPRWDDPEGVPIDAIIF 419
Query: 441 GGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDY 500
GGRRP+GVPLV E+F W+HGVF+G++MRSEATAAAEHKG +MHDPFAMRPFFGYN G Y
Sbjct: 420 GGRRPRGVPLVVEAFGWRHGVFMGSAMRSEATAAAEHKGGRLMHDPFAMRPFFGYNAGRY 479
Query: 501 LKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEA 560
L+HWLS R+NA+LP++FHVNWF + ++G F+WPGFG N RVL WI R++ ++ A
Sbjct: 480 LEHWLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWIFGRIQ-GRDTARP 538
Query: 561 SPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAE 620
+PIG++PK L L VD +LF +K FWE+E + L+ Y+ E GADLP + AE
Sbjct: 539 TPIGWVPKEGDLDLGGL-PGVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRDVMAE 597
Query: 621 IDALKQRIKQ 630
++ L++R+++
Sbjct: 598 LEGLEERVRK 607
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis,
lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB:
3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Length = 624
Score = 773 bits (1996), Expect = 0.0
Identities = 406/609 (66%), Positives = 481/609 (78%), Gaps = 5/609 (0%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
G + ++ +++ F++ +LCQP +HICDGSE EY L+ M ++ +R + KY+NCW
Sbjct: 19 QGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCW 78
Query: 83 LARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMK 142
LA T+P DVAR+ESKT I TQE+ +TVP K G + LG W+S +D+E+A RFPGCMK
Sbjct: 79 LALTDPRDVARIESKTVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGCMK 137
Query: 143 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALH 202
GRTMYVIPFSMGP+GSPL+KIG+E+TDSPYVV SMRIMTR+GT VL L D F+K LH
Sbjct: 138 GRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALG-DGEFIKCLH 196
Query: 203 SVGTP-VSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTI 261
SVG P K W C+PE T+I H P EI+S+GSGYGGNSLLGKKCFALRI S +
Sbjct: 197 SVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRL 256
Query: 262 AKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAW 321
AK EGWLAEHMLILGITNPEG+KKY+AAAFPSACGKTNLAM+NPTLPG+KVECVGDDIAW
Sbjct: 257 AKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAW 316
Query: 322 MKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGME 381
MKFD +G LRAINPENGFFGVAPGTS KTNP A+KT+ KNTIFTNVA TSDGGVYWEG++
Sbjct: 317 MKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGID 376
Query: 382 DEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFG 441
+ ++P V+IT W NK W+ D AHPNSRFCTPASQCP IDP WES EGVPI IIFG
Sbjct: 377 EPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFG 436
Query: 442 GRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYL 501
GRRP GVPLVYE+ WQHGVF+GA+MRSEATA AEHKGKVIMHDPFAMRPFFGYNFG YL
Sbjct: 437 GRRPAGVPLVYEALSWQHGVFVGAAMRSEATAGAEHKGKVIMHDPFAMRPFFGYNFGKYL 496
Query: 502 KHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEAS 561
HWLSM R AKLPK+FHVNWFRK G+FLWPGFGEN RVL+W+ R+E ++ A+ +
Sbjct: 497 AHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIE-GEDSAKLT 555
Query: 562 PIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEI 621
PIGY+PK +AL L DV++EELF K FWE+EV+++ +Y +Q+ ADLP I+ E+
Sbjct: 556 PIGYVPKEDALNLKGL-GDVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIEREL 614
Query: 622 DALKQRIKQ 630
ALKQRI Q
Sbjct: 615 RALKQRISQ 623
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate;
GTP-dependent, signaling protein, lyase; 2.30A
{Corynebacterium glutamicum}
Length = 610
Score = 753 bits (1946), Expect = 0.0
Identities = 289/613 (47%), Positives = 389/613 (63%), Gaps = 20/613 (3%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYEN 80
G + +L ++I + VEL QP V DGS+ E+ + + +V+ TL + K N
Sbjct: 10 QGEAPTKNKELLNWIADAVELFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRPN 69
Query: 81 CWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGC 140
+LAR+NP+DVARVES+TFIC++++ + P NW PQ ++ + + + G
Sbjct: 70 SYLARSNPSDVARVESRTFICSEKEEDAGP---------TNNWAPPQAMKDEMSKHYAGS 120
Query: 141 MKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKA 200
MKGRTMYV+PF MGP+ P K+GV++TDS YVV SMRIMTR+G L+ + A+ FV+
Sbjct: 121 MKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMGIEALDKIGANGSFVRC 180
Query: 201 LHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGST 260
LHSVG P+ E WPC+ + I P EI SYGSGYGGN++L KKC+ALRI S
Sbjct: 181 LHSVGAPLEPGQEDVAWPCNDTKYIT-QFPETKEIWSYGSGYGGNAILAKKCYALRIASV 239
Query: 261 IAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIA 320
+A+ EGW+AEHMLIL + NPEG+ +IAAAFPSACGKTNLAM+ PT+PG+ + VGDDIA
Sbjct: 240 MAREEGWMAEHMLILKLINPEGKAYHIAAAFPSACGKTNLAMITPTIPGWTAQVVGDDIA 299
Query: 321 WMKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFK-NTIFTNVASTSDGGVYWEG 379
W+K ++G L A+NPENGFFGVAPGT+ +NPIAMKT+ NT+FTNVA T DG ++WEG
Sbjct: 300 WLKLREDG-LYAVNPENGFFGVAPGTNYASNPIAMKTMEPGNTLFTNVALTDDGDIWWEG 358
Query: 380 MEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAII 439
M+ + + DW W AAHPNSR+C Q P P + EGV I AI+
Sbjct: 359 MDGD--APAHLIDWMGNDWTPESDENAAHPNSRYCVAIDQSPAAAPEFNDWEGVKIDAIL 416
Query: 440 FGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAA-AEHKGKVIMHDPFAMRPFFGYNFG 498
FGGRR VPLV +++DW+HG +GA + S TAA AE K + HDP AM PF GYN G
Sbjct: 417 FGGRRADTVPLVTQTYDWEHGTMVGALLASGQTAASAEAKVGTLRHDPMAMLPFIGYNAG 476
Query: 499 DYLKHWLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIA 558
+YL++W+ M + K+P +F VNWFR+G G FLWPGFG+N RVL W++ R+E A
Sbjct: 477 EYLQNWIDMGNKGGDKMPSIFLVNWFRRGEDGRFLWPGFGDNSRVLKWVIDRIE-GHVGA 535
Query: 559 EASPIGYIPKPEALITTNL-ASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAI 617
+ + +G+ K E L L D++E + W +V+D Y LG +P +
Sbjct: 536 DETVVGHTAKAEDLDLDGLDTPIEDVKEALTAPAEQWANDVEDNAEYL-TFLGPRVPAEV 594
Query: 618 QAEIDALKQRIKQ 630
++ DALK RI
Sbjct: 595 HSQFDALKARISA 607
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 6e-08
Identities = 82/416 (19%), Positives = 127/416 (30%), Gaps = 140/416 (33%)
Query: 54 GSEREY-KELIDL------MVKD------KTLRPVPKYENCWLARTNPADVARVESKTFI 100
G+ +Y +EL DL +V D +TL L RT D +V ++
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE--------LIRT-TLDAEKVFTQGLN 214
Query: 101 CTQ--EKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGS 158
+ E PD +DY + IP S
Sbjct: 215 ILEWLENPSNTPD---------------KDY----------------LLSIPISC----- 238
Query: 159 PLSKIGVEITDSPYVV---------GSMRI----MTRIGTPVL------------NLLDA 193
PL IGV I + YVV G +R T ++ + +
Sbjct: 239 PL--IGV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 194 DQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCF 253
+ + L +G V +P P IL N G S +
Sbjct: 296 VRKAITVLFFIG--VRCYEAYPNTSLPPS---ILEDSLEN-------NEGVPSPM----L 339
Query: 254 ALR------IGSTIAKREGWLAEHMLI-LGITNPEGQKKYIAAAFPSACGKTNLAMLNPT 306
++ + + K L + + + N G K + + P + L LN T
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVSGPPQS-----LYGLNLT 392
Query: 307 LPGYKVECVGDDIAWMKFDKEGVLRAINPENGFFGV-APGTS---NKTNPIAMKTVFKNT 362
L K G D + + F + R + N F V +P S + + K + KN
Sbjct: 393 LRKAKAP-SGLDQSRIPFSE----RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 363 IFTN-------VASTSDGGVYWEGMEDEISPDVSITDW-HNKP--WKKSDGTQAAH 408
+ N V T DG + IS I D P W+ + +A H
Sbjct: 448 VSFNAKDIQIPVYDTFDGSD-LRVLSGSISE--RIVDCIIRLPVKWETTTQFKATH 500
Score = 30.0 bits (67), Expect = 3.2
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 47/137 (34%)
Query: 424 DPNWESHEGVPISAII----------FGGRRPQGVPLVYESFDWQHGVFLGASMRSEAT- 472
D +++ G I I+ FGG + + + Y + ++ + +++E
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET--IVDGKLKTEKIF 1707
Query: 473 -AAAEHKGKVIMHDP--------------FAMRPFFGYNFGDYLKHWLSMEQRTNAKLPK 517
EH M + ++ +
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLM----EKAA------FEDLKSKGLIPADA 1757
Query: 518 VF--HVNWFRKGSQGEF 532
F H S GE+
Sbjct: 1758 TFAGH-------SLGEY 1767
Score = 29.2 bits (65), Expect = 4.7
Identities = 74/449 (16%), Positives = 128/449 (28%), Gaps = 162/449 (36%)
Query: 271 HMLILGI----TNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDK 326
H L + + K + + +A + A +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-----------ALFRAVG 150
Query: 327 EGVLR--AINPENGFFGVAPGTSN----------KTNPIAMKTVFK---NTIFTNVASTS 371
EG + AI FG G ++ +T + + + K T+ + +T
Sbjct: 151 EGNAQLVAI------FG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 372 DGG-VYWEGMEDEISPDVSITDWHNKPWKKSDG---------------TQAAH------- 408
D V+ +G+ I +W P D Q AH
Sbjct: 204 DAEKVFTQGLN--------ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 409 ----P---NSRFCT--------PASQCPTIDPNWESHEGVPISAI--IF--GGRRPQGVP 449
P S + +WES AI +F G R + P
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 450 LVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAM---RPFFGYNFGDYLKHWLS 506
L S+ ++ E G P M +
Sbjct: 316 NTS----------LPPSILEDSLENNE--GV-----PSPMLSIS---NLTQEQVQDYV-- 353
Query: 507 MEQRTNAKLPKVFHV-----NWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEAS 561
+TN+ LP V N + + G +++ L+ LR+ +
Sbjct: 354 --NKTNSHLPAGKQVEISLVNGAKN-----LVVSGPPQSLYGLNLTLRKA--------KA 398
Query: 562 PIGY----IP----KPEA----L-IT----TNL---ASDVDLEELFSFDKSFWEQEVQDL 601
P G IP K + L + ++L ASD+ ++L + SF +D+
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN---AKDI 455
Query: 602 QR--YFNEQLGADLPTAIQAEIDALKQRI 628
Q Y G+DL + ++ +RI
Sbjct: 456 QIPVYDTFD-GSDL----RVLSGSISERI 479
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.020
Identities = 55/323 (17%), Positives = 91/323 (28%), Gaps = 111/323 (34%)
Query: 12 FNQEIRKFSLKHGYVSAISPKLKSFIDNCVELC---QPSDVHICDGSEREYKELIDLMVK 68
+ +I F L + SP+ + ++ +L P+ D S + + +
Sbjct: 180 MDFKI--FWLNLKNCN--SPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 69 DKTLRPVPKYENC-------WLARTNPADVARVESKTFICTQEKAETVPD---------- 111
+ L YENC A+ + + K + T+ K V D
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQ--VTDFLSAATTTHI 289
Query: 112 ---------TKPGVKGTLGNW--ISPQDY-EEAIMQRFPGCMKGRTMYVIPFSMGPVGSP 159
T VK L + PQD E + +P
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT----------------------TNP 327
Query: 160 L--SKIGVEITDSP----YV--VGSMRIMTRIGTPVLNLLDAD-QPFVKALHSVGTPVSG 210
S I I D V ++ T I + + L A+ + L SV
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SV------ 380
Query: 211 KHEFPE------------WPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIG 258
FP W + +++ N++ Y SL+ K+ I
Sbjct: 381 ---FPPSAHIPTILLSLIWFDVIKSDVMV---VVNKLHKY-------SLVEKQPKESTIS 427
Query: 259 ------STIAKREGWLAEHMLIL 275
K E A H I+
Sbjct: 428 IPSIYLELKVKLENEYALHRSIV 450
Score = 35.2 bits (80), Expect = 0.077
Identities = 59/459 (12%), Positives = 116/459 (25%), Gaps = 120/459 (26%)
Query: 190 LLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLL- 248
L + FV D ++I L K + I+ G L
Sbjct: 22 LSVFEDAFVDNFDCKDVQ------------DMPKSI-LSKEEIDHIIMSKDAVSGTLRLF 68
Query: 249 ------GKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302
++ + + +L + + YI + L
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-------RDRLYN 121
Query: 303 LNPTLPGYKV---ECVGDDIAWMKFDKEGVLRAINPENGFF--GVAPGTSNKTNPIAMKT 357
N Y V + +K + L + P GV G+ KT
Sbjct: 122 DNQVFAKYNVSRLQPY------LKLRQ--ALLELRPAKNVLIDGVL-GSG--------KT 164
Query: 358 VFKNTIFTN--VASTSDGGVYWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCT 415
+ + V D ++W +++ SP+ ++ + K + D + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDH---- 219
Query: 416 PASQCPTIDPNWESHEGVPISAIIFGGRRPQG------V--PLVYESFDWQHGVFLGASM 467
S + + E + ++ V + +F+ + L
Sbjct: 220 --SSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 468 RSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSMEQRTNAKLPKVFHVNWFRKG 527
+ + I D +M L +L LP+
Sbjct: 275 KQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCR---PQDLPREVL-----TT 325
Query: 528 SQGEFLWPGFGENIRVLDWILR-----RVENNK--EIAEASPIGYIPKPEALITTNLASD 580
+ E+IR D + V +K I E+S L
Sbjct: 326 N--PRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESS------------LNVLEPA 369
Query: 581 VDLEELFS----FDKS----------FW----EQEVQDL 601
+ ++F F S W + +V +
Sbjct: 370 -EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.086
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 24/89 (26%)
Query: 539 ENIRVLDWILRRVENNKEIAEASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQEV 598
E+IR W R E K + E A S V +E + ++++
Sbjct: 85 ESIR--KW---REEQRKRLQE--------LDAA-------SKVMEQEW----REKAKKDL 120
Query: 599 QDLQRYFNEQLGADLPTAIQAEIDALKQR 627
++ + +EQ+ + A+ +Q
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADKAFYQQP 149
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 33.3 bits (77), Expect = 0.21
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 538 GENIRVLDWILR-RVENNKEIAEASP--IGYIP-KPEALITTNLASDVDLEELFSFDKSF 593
G+NI+V ++R R N E ++ + P + E + T +D + ++FD F
Sbjct: 7 GKNIQV---VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVF 63
Query: 594 WEQEVQD 600
Q
Sbjct: 64 GASTKQI 70
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 32.6 bits (75), Expect = 0.34
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 535 PGFGENIRVLDWILR-RVENNKEIAEASPIGYIPKPEALITTNLASDVDLEELFSFDKSF 593
G +RV +R R + + P + + + FD +
Sbjct: 17 QGPPARVRV---AVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFY 73
Query: 594 WEQEVQD 600
E+ Q
Sbjct: 74 GERSTQQ 80
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 31.8 bits (73), Expect = 0.75
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 538 GENIRVLDWILR-RVENNKEIAEASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQ 596
+NI+V +R R N++E S + T D L + F+FD+SF +
Sbjct: 22 NQNIQV---YVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPE 78
Query: 597 EVQD 600
Q
Sbjct: 79 SKQC 82
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 31.0 bits (71), Expect = 1.1
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 538 GENIRVLDWILR-RVENNKEIAEASP--IGYIPKPEALITTNLASDVDLEEL------FS 588
+NI+V I+R R N +E E + I +I + + F+
Sbjct: 3 SDNIKV---IVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFT 59
Query: 589 FDKSFWEQEVQD 600
FD + +
Sbjct: 60 FDAVYDQTSCNY 71
>3qs3_A Fimbrillin MATB homolog, ECPD; pilin, IG-like fold, biofilm,
adhesion, immunoglobulin-like major pilin domain
involved in biofilms; HET: FLC; 2.10A {Escherichia coli}
Length = 191
Score = 30.6 bits (68), Expect = 1.2
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 330 LRAINPENGFFGVA-PGTSNKTNPIAMKTVFKNTI--FTNVASTSDGGVYWEGMEDEISP 386
++ N + G F VA G S T + NT+ ST + GV + G E +
Sbjct: 36 IKGFNSQKGLFDVAIEGDSTATAFKLTSRLITNTLTQLDTSGSTLNVGVDYNGTAVEKTG 95
Query: 387 DVSITD 392
D + D
Sbjct: 96 DTVMID 101
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 31.0 bits (71), Expect = 1.3
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 538 GENIRVLDWILR-RVENNKEIAEASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQ 596
G +++V +R R N++E++ S N + + FSFD S+W
Sbjct: 3 GASVKV---AVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSH 59
Query: 597 EVQDLQRY 604
+ Y
Sbjct: 60 TSPEDINY 67
>3qs2_A Fimbrillin MATB homolog; pilin, IG-like fold, biofilms, adhesion,
immunoglobulin-like major pilin domain involved in
biofilms; 1.78A {Escherichia coli}
Length = 188
Score = 30.2 bits (67), Expect = 1.3
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 330 LRAINPENGFFGVA-PGTSNKTNPIAMKTVFKNTI--FTNVASTSDGGVYWEGMEDEISP 386
++ N + G F VA G S T + NT+ ST + GV + G E +
Sbjct: 54 IKGFNSQKGLFDVAIEGDSTATAFKLTSRLITNTLTQLDTSGSTLNVGVDYNGTAVEKTG 113
Query: 387 DVSITD 392
D + D
Sbjct: 114 DTVMID 119
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 30.6 bits (70), Expect = 1.7
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 538 GENIRVLDWILR-RVENNKEIAEASP--IGYIPKPEALITTNLASDVDLEELFSFDKSFW 594
+I+V + R R +N EI + + + + + + F+FD+ F
Sbjct: 5 ANSIKV---VARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK-----EAQGSFTFDRVFD 56
Query: 595 EQEVQD 600
Q
Sbjct: 57 MSCKQS 62
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 30.3 bits (69), Expect = 1.7
Identities = 18/66 (27%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 540 NIRVLDWILR-RVENNKEIAEASPIGYIPKPEA----LITTNLASDVDLEELFSFDKSFW 594
NIRV R R E + S I EA +T N L F FD F
Sbjct: 6 NIRV---YCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFE 62
Query: 595 EQEVQD 600
Sbjct: 63 PSHTNK 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.1
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 595 EQEVQDLQRYFNEQLGAD--LPT-AIQAEID 622
+Q ++ LQ +L AD P AI+A ++
Sbjct: 19 KQALKKLQASL--KLYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 5.1
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 13/34 (38%)
Query: 91 VARVES--KTFICTQEKAETVPDTKP--GVKGTL 120
+ ++++ K + D+ P +K T+
Sbjct: 22 LKKLQASLKLY---------ADDSAPALAIKATM 46
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 30.2 bits (69), Expect = 2.2
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 539 ENIRVLDWILR-RVENNKEIAEASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQE 597
+ V +R R N++E + G + N+ VD + F+FD+ F E
Sbjct: 4 GAVAV---CVRVRPLNSREESL----GETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNE 56
Query: 598 VQD 600
Sbjct: 57 TTK 59
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 30.1 bits (68), Expect = 2.3
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 447 GVPLVYESFDW----QHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLK 502
GVPL Y +DW Q G A A A I + PFF Y+
Sbjct: 220 GVPL-Y-GYDWIIPYQPGTVASAISNQNAIERAMRYQAPIQYSAEYQSPFFRYSDQQGRT 277
Query: 503 HWLSME 508
H + E
Sbjct: 278 HEVWFE 283
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2,
protein structure initiative; 2.05A {Bordetella
parapertussis}
Length = 333
Score = 30.0 bits (68), Expect = 2.5
Identities = 10/70 (14%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 544 LDWILRRVENNKEIAEASPIGYIPK-PEALITTNLASDV-DLEELFSFDKSFWEQEVQDL 601
+++ L E K EA + Y + + L + ++ + D + + + L
Sbjct: 259 MNYALG-EEAQKAFCEA--MYYGAVNRKVQYSEKLKHRLPSIDSVQLVDTALLIKNMSAL 315
Query: 602 QRYFNEQLGA 611
+N+++ +
Sbjct: 316 LDLWNKRIAS 325
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 29.4 bits (67), Expect = 3.1
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 540 NIRVLDWILR-RVENNKEIAEASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQEV 598
NIRV I R R ++ + + F DK F Q
Sbjct: 5 NIRV---IARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQAS 61
Query: 599 QD 600
Q
Sbjct: 62 QQ 63
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 28.7 bits (65), Expect = 6.1
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 535 PGFGENIRVLDWILR-RVENNKEIAEASP--IGYIP-KPEALITTNLASDVDLEELFSFD 590
G E++RV ++R R N KE A + + + + + ++ + F+FD
Sbjct: 17 QGSSESVRV---VVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFD 73
Query: 591 KSFWEQEVQD 600
+ Q
Sbjct: 74 AVYDWNAKQF 83
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm,
flagellar rotatio magnesium, metal-binding,
phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A
3h1e_A 3h1f_A
Length = 129
Score = 27.5 bits (62), Expect = 6.2
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 364 FTNVASTSDGGVYWEGMEDEISPDVSITDW 393
+ +V G WE ++ V ITDW
Sbjct: 30 YEDVLEAEHGVEAWEKLDANADTKVLITDW 59
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 28.3 bits (64), Expect = 8.2
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 9/64 (14%)
Query: 538 GENIRVLDWILR-RVENNKEIAEASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQ 596
+R+ +R + P + + + F FD +F
Sbjct: 21 LSAVRI---AVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNE-----FHFDHAFPAT 72
Query: 597 EVQD 600
QD
Sbjct: 73 ISQD 76
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 27.9 bits (63), Expect = 9.5
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 539 ENIRVLDWILR-RVENNKEIAE-ASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQ 596
NI+V + R R N E+ I + ++ + + ++FD+ F
Sbjct: 7 CNIKV---MCRFRPLNESEVNRGDKYIAKFQGEDTVVIAS--------KPYAFDRVFQSS 55
Query: 597 EVQD 600
Q+
Sbjct: 56 TSQE 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,245,712
Number of extensions: 644877
Number of successful extensions: 1401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1375
Number of HSP's successfully gapped: 31
Length of query: 630
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 531
Effective length of database: 3,937,614
Effective search space: 2090873034
Effective search space used: 2090873034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)