RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13077
(630 letters)
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 588 bits (1518), Expect = 0.0
Identities = 259/364 (71%), Positives = 300/364 (82%), Gaps = 2/364 (0%)
Query: 267 WLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGDDIAWMKFDK 326
WLAEHML+LGITNPEG+KKY+AAAFPSACGKTNLAM+NP+LPG+KVECVGDDIAWMKFD
Sbjct: 1 WLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDA 60
Query: 327 EGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISP 386
+G LRAINPENGFFGVAPGTS KTNP A+KT+ KNTIFTNVA TSDGGVYWEG+++ ++
Sbjct: 61 QGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAS 120
Query: 387 DVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGRRPQ 446
V+IT W NK W DG AHPNSRFCTPASQCP ID WES EGVPI IIFGGRRP
Sbjct: 121 GVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPA 180
Query: 447 GVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLS 506
GVPLVYE+ WQHGVF+GA+MRSEATAAAEHKGK+IMHDPFAMRPFFGYNFG YL HWLS
Sbjct: 181 GVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLS 240
Query: 507 MEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAEASPIGYI 566
M Q AKLPK+FHVNWFRK +G+FLWPGFGEN RVL+W+ R++ K + +PIGYI
Sbjct: 241 MAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRID-GKASTKLTPIGYI 299
Query: 567 PKPEALITTNLASDVDLEELFSFDKSFWEQEVQDLQRYFNEQLGADLPTAIQAEIDALKQ 626
PK +AL L +++ ELFS K FW++EV+D+++Y +Q+ ADLP I+ EI ALKQ
Sbjct: 300 PKEDALNLKGL-GHINMMELFSISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQ 358
Query: 627 RIKQ 630
RI Q
Sbjct: 359 RISQ 362
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 362 bits (930), Expect = e-123
Identities = 147/245 (60%), Positives = 181/245 (73%), Gaps = 3/245 (1%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
G + ++ ++ F++N ELCQP +HICDGSE E L+ M ++ LR + KY+NCW
Sbjct: 8 QGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCW 67
Query: 83 LARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMK 142
LA T+P DVAR+ESKT I TQE+ +TVP K G+ LG W+S +D+E+A RFPGCMK
Sbjct: 68 LALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMK 126
Query: 143 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALH 202
GRTMYVIPFSMGP+GSPLSKIG+E+TDSPYVV SMRIMTR+GTPVL L + FVK LH
Sbjct: 127 GRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEALGDGE-FVKCLH 185
Query: 203 SVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTI 261
SVG P+ K WPC+PE T+I H P EI+S+GSGYGGNSLLGKKCFALR+ S +
Sbjct: 186 SVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRL 245
Query: 262 AKREG 266
AK EG
Sbjct: 246 AKEEG 250
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 31.9 bits (72), Expect = 0.21
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 281 EGQKKYIAAAF-PSACGKTNLAMLNPTLPGYKVECVGDD-IAWMKFDKEGVLRAINPENG 338
G+K +A F S GKT L+ T P ++ +GDD W D +GV N E G
Sbjct: 10 VGEKGDVAVFFGLSGTGKTTLS----TDPKRRL--IGDDEHGW---DDDGV---FNFEGG 57
Query: 339 FFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGMEDEISPDVSITDWHNKPW 398
+ S + P + ++ + NV DG + ++ + VS +H
Sbjct: 58 CYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNI 117
Query: 399 KKS--DGTQAAHPNSRFCTPASQCPTI 423
K A P +
Sbjct: 118 VKPVSKAGHATKVIFLTADAFGVLPPV 144
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 31.0 bits (69), Expect = 0.41
Identities = 17/176 (9%), Positives = 39/176 (22%), Gaps = 6/176 (3%)
Query: 384 ISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGR 443
+ + + + E+ + +
Sbjct: 77 VRLPHGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKA 136
Query: 444 RPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKH 503
R + + + LG +EA K D + LK
Sbjct: 137 RTRMIAQYAIGGQE-GLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKE 195
Query: 504 WLSMEQRTNAKLPKVFHVNWFRKGSQGEFLWPGFGENIRVLDWILRRVENNKEIAE 559
+ E+ + + E G + +D L E + +++E
Sbjct: 196 LGAPERLYLK--EPTADLLDEKPQQSDETE---LGISYDEIDDYLEGKEVSAKVSE 246
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 30.7 bits (68), Expect = 0.48
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 540 NIRVLDWILR-RVENNKEIAEASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWEQEV 598
+++V +R R N++E++ S N + + FSFD S+W
Sbjct: 2 SVKV---AVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 58
Query: 599 QD 600
+
Sbjct: 59 PE 60
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 29.9 bits (66), Expect = 0.71
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 7/135 (5%)
Query: 376 YWEGMEDEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPI 435
YW+G+ + + IT + G + ++ + +D
Sbjct: 22 YWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQ 81
Query: 436 SAIIFGGRRPQGVPLVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGY 495
AI + + GV +G + + ++ P PF
Sbjct: 82 QAINDAKLVINEL------NADEIGVLIGTGIGGLKVLEDQQT-ILLDKGPSRCSPFMIP 134
Query: 496 NFGDYLKHWLSMEQR 510
+ L+
Sbjct: 135 MMIANMASGLTAINL 149
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 29.9 bits (67), Expect = 0.96
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 281 EGQKKYIAAAF-PSACGKTNLAMLNPTLPGYKVECVGDD-IAWMKFDKEGVLRAINPENG 338
G++ + F S GKT L+ P + +GDD W GV N E G
Sbjct: 10 VGKQGDVTVFFGLSGTGKTTLSAD----PHRNL--IGDDEHVW---TDRGV---FNIEGG 57
Query: 339 FFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVY 376
+ A G + KT V + N G
Sbjct: 58 CYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEI 95
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 29.2 bits (64), Expect = 1.5
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 540 NIRVLDWILR-RVENNKEIAEASPI---GYIPKPEALITTNLASDVDLEELFSFDKSFWE 595
NI+V ++R R N E ++ + E + T +D + ++FD F
Sbjct: 1 NIQV---VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 57
Query: 596 QEVQD 600
Q
Sbjct: 58 STKQI 62
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 29.1 bits (64), Expect = 1.6
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 540 NIRVLDWILR-RVENNKEIAEASPIGYIPKPEALITTNLASDVDL---EELFSFDKSFWE 595
NIRV R R E + ++ + +++FSFD+ F
Sbjct: 46 NIRV---FCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHP 102
Query: 596 QEVQD 600
Q
Sbjct: 103 LSSQS 107
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 29.1 bits (64), Expect = 1.8
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 539 ENIRVLDWILR-RVENNKEIAEASP-IGYIPKPEALITTNLASDVDL-----EELFSFDK 591
I V +R R N +E+A+ + +P L+ VDL + F FD
Sbjct: 30 HRICV---CVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDF 86
Query: 592 SFWEQEVQD 600
+F E +
Sbjct: 87 AFDETASNE 95
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 28.8 bits (63), Expect = 2.4
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 538 GENIRVLDWILR-RVENNKEIAE-ASPIGYIPKPEALITTNLASDVDLEELFSFDKSFWE 595
+I+V + R R +N EI PI P+ + + F+FD+ F
Sbjct: 4 ANSIKV---VARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGS----FTFDRVFDM 56
Query: 596 QEVQD 600
Q
Sbjct: 57 SCKQS 61
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 159
Score = 27.7 bits (61), Expect = 2.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 HICDGSEREYKELIDLMVKDKTLRPVPKYENCWLAR 85
+ D +ER+ EL+ D T +PV K+++C LAR
Sbjct: 127 DLSDEAERDEYELLCP---DNTRKPVDKFKDCHLAR 159
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 27.7 bits (60), Expect = 4.0
Identities = 24/208 (11%), Positives = 49/208 (23%), Gaps = 13/208 (6%)
Query: 342 VAPGTSNKTNPIAMKTVFKNTIFT-NVASTSDGGVYWEGMED----EISPDVSITDWHNK 396
+ + P + T F F N+AS DG ++ E I+PD +
Sbjct: 7 IYADKPIELAPAKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV 66
Query: 397 PWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPISAIIFGGRR-------PQGVP 449
K S ++ + + + +S V +
Sbjct: 67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQY 126
Query: 450 LVYESFDWQHGVFLGASMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYLKHWLSMEQ 509
L +S+ + + F FG++L + +
Sbjct: 127 LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA-ANGLKRFGNFLYVSNTEKM 185
Query: 510 RTNAKLPKVFHVNWFRKGSQGEFLWPGF 537
+ + F
Sbjct: 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDF 213
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.8 bits (60), Expect = 4.0
Identities = 20/175 (11%), Positives = 39/175 (22%), Gaps = 3/175 (1%)
Query: 265 EGWLAEHMLILGITNPEGQKKYIAAAF--PSACGKTNLAM-LNPTLPGYKVECVGDDIAW 321
W +G + AA P GKT A + L +E D+
Sbjct: 31 ANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 90
Query: 322 MKFDKEGVLRAINPENGFFGVAPGTSNKTNPIAMKTVFKNTIFTNVASTSDGGVYWEGME 381
GV A++ + + + + + G
Sbjct: 91 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC 150
Query: 382 DEISPDVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHEGVPIS 436
+ S + + K + A+ + E +
Sbjct: 151 RKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 205
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 286
Score = 27.2 bits (60), Expect = 6.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 539 ENIRVLDWILRRVENNKEIAEASPIGYIPKPEALITTNLASDVDLEE 585
+ L + + E N E+A A Y P+ ++T NL +D ++
Sbjct: 109 QQYAHLTALAKAAEENPELAAALGSDYTITPDIIVTRNLIADAEINR 155
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 95
Score = 25.5 bits (56), Expect = 6.5
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 277 ITNPEGQKKYIAAAFP 292
+ + E K Y++ A P
Sbjct: 12 VRDSERYKDYVSTAKP 27
>d2fbla1 d.63.1.2 (A:2-151) Hypothetical protein NE1496
{Nitrosomonas europaea [TaxId: 915]}
Length = 150
Score = 26.5 bits (58), Expect = 7.1
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 584 EELFSFDKSFW-EQEVQDLQRYFNEQLGADLP 614
+ +F W +EV + +RY N+ L +P
Sbjct: 119 DAAQAFIPPPWFGEEVTEDKRYKNKALALSIP 150
>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus
[TaxId: 63363]}
Length = 120
Score = 26.0 bits (57), Expect = 7.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 37 IDNCVELCQPSDVHICDGSEREYKELID 64
I N +++ I DGS E+ E I
Sbjct: 83 ITNVTIEVIGNEIPILDGSGWEFYEAIR 110
>d1xbwa_ d.58.4.5 (A:) Hypothetical protein IsdG {Staphylococcus
aureus [TaxId: 1280]}
Length = 109
Score = 25.6 bits (56), Expect = 8.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 388 VSITDWHNKP----WKKSDGTQAAHPNSRFCTPASQCPTIDPNWESHE 431
+T W +K W KSD +AAH + R P I+ +++
Sbjct: 55 KILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNEDESSPIINNKVITYD 102
>d1usra_ b.68.1.1 (A:) Paramyxovirus hemagglutinin-neuraminidase
head domain {Newcastle disease virus [TaxId: 11176]}
Length = 448
Score = 26.7 bits (59), Expect = 9.6
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 387 DVSITDWHNKPWKKSDGTQAAHPNSRFCTPASQCP 421
+++++ P S C +++CP
Sbjct: 305 PMTVSNKTATLHSPYTFNAFTRPGSIPCQASARCP 339
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835
{Bacillus halodurans [TaxId: 86665]}
Length = 212
Score = 26.2 bits (57), Expect = 9.8
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 255 LRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAML-NPTLPGYKVE 313
+ I ++E + I + + K + P + + + +P K++
Sbjct: 33 TLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLV--DDPETAKQQLIDWMEAAGVPSQKID 90
Query: 314 CVGDDIAWMKFDKEGVLRAINPE 336
D I + F E
Sbjct: 91 HTMDIINTISFKGGHGQSLATRE 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,538,076
Number of extensions: 124772
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 24
Length of query: 630
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 539
Effective length of database: 1,158,166
Effective search space: 624251474
Effective search space used: 624251474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)