BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13078
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
pdb|1M51|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|1NHX|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|B Chain B, Pepck Complex With A Gtp-Competitive Inhibitor
Length = 625
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 218/295 (73%), Gaps = 3/295 (1%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
G + ++ ++ F++N ELCQP +HICDGSE E L+ M ++ LR + KY+NCW
Sbjct: 20 QGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCW 79
Query: 83 LARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMK 142
LA T+P DVAR+ESKT I TQE+ +TVP K G+ LG W+S +D+E+A RFPGCMK
Sbjct: 80 LALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLS-QLGRWMSEEDFEKAFNARFPGCMK 138
Query: 143 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALH 202
GRTMYVIPFSMGP+GSPLSKIG+E+TDSPYVV SMRIMTR+GTPVL L D FVK LH
Sbjct: 139 GRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAL-GDGEFVKCLH 197
Query: 203 SVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVXXXXXXXXXXXXXKKCFALRIGSTI 261
SVG P+ K WPC+PE T+I H P EI+ KKCFALR+ S +
Sbjct: 198 SVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRL 257
Query: 262 AKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
AK EGWLAEHML+LGITNPEG+KKY+AAAFPSACGKTNLAM+NP+LPG+KVECVG
Sbjct: 258 AKEEGWLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVG 312
>pdb|2QF2|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QF2|B Chain B, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QEW|A Chain A, Rat Cytosolic Pepck, In Complex With Manganese Ion.
pdb|2QEY|A Chain A, Rat Cytosolic Pepck In Complex With Gtp
pdb|2QF1|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid.
pdb|2RK7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK8|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RK8|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RKA|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKA|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKD|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With 3-
Phosphonopropionate
pdb|2RKE|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Sulfoacetate.
pdb|3DT2|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DT7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DTB|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
pdb|3DTB|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
Length = 624
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/301 (59%), Positives = 220/301 (73%), Gaps = 5/301 (1%)
Query: 19 FSLK--HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP 76
FS K G + ++ +++ F++ +LCQP +HICDGSE EY L+ M ++ +R +
Sbjct: 13 FSAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLK 72
Query: 77 KYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQR 136
KY+NCWLA T+P DVAR+ESKT I TQE+ +TVP K G + LG W+S +D+E+A R
Sbjct: 73 KYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNAR 131
Query: 137 FPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQP 196
FPGCMKGRTMYVIPFSMGP+GSPL+KIG+E+TDSPYVV SMRIMTR+GT VL L D
Sbjct: 132 FPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEAL-GDGE 190
Query: 197 FVKALHSVGTPVSGKHEF-PEWPCDPERTIILHKPAANEIVXXXXXXXXXXXXXKKCFAL 255
F+K LHSVG P+ K W C+PE T+I H P EI+ KKCFAL
Sbjct: 191 FIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFAL 250
Query: 256 RIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECV 315
RI S +AK EGWLAEHMLILGITNPEG+KKY+AAAFPSACGKTNLAM+NPTLPG+KVECV
Sbjct: 251 RIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECV 310
Query: 316 G 316
G
Sbjct: 311 G 311
>pdb|3MOE|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Beta-Sulfopyruvate And Gtp
pdb|3MOF|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOF|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOH|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
pdb|3MOH|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
Length = 624
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/301 (59%), Positives = 220/301 (73%), Gaps = 5/301 (1%)
Query: 19 FSLK--HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP 76
FS K G + ++ +++ F++ +LCQP +HICDGSE EY L+ M ++ +R +
Sbjct: 13 FSAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLK 72
Query: 77 KYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQR 136
KY+NCWLA T+P DVAR+ESKT I TQE+ +TVP K G + LG W+S +D+E+A R
Sbjct: 73 KYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNAR 131
Query: 137 FPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQP 196
FPGCMKGRTMYVIPFSMGP+GSPL+KIG+E+TDSPYVV SMRIMTR+GT VL L D
Sbjct: 132 FPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEAL-GDGE 190
Query: 197 FVKALHSVGTPVSGKHEF-PEWPCDPERTIILHKPAANEIVXXXXXXXXXXXXXKKCFAL 255
F+K LHSVG P+ K W C+PE T+I H P EI+ KKCFAL
Sbjct: 191 FIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFAL 250
Query: 256 RIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECV 315
RI S +AK EGWLAEHMLILGITNPEG+KKY+AAAFPSACGKTNLAM+NPTLPG+KVECV
Sbjct: 251 RIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECV 310
Query: 316 G 316
G
Sbjct: 311 G 311
>pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Mad Data
Length = 625
Score = 342 bits (878), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 172/295 (58%), Positives = 206/295 (69%), Gaps = 3/295 (1%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
G + ++ ++ F++N ELCQP +HICDGSE E L+ ++ LR + KY+NCW
Sbjct: 20 QGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQXEEEGILRRLKKYDNCW 79
Query: 83 LARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMK 142
LA T+P DVAR+ESKT I TQE+ +TVP K G+ LG W S +D+E+A RFPGC K
Sbjct: 80 LALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLS-QLGRWXSEEDFEKAFNARFPGCXK 138
Query: 143 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALH 202
GRT YVIPFS GP+GSPLSKIG+E+TDSPYVV S RI TR GTPVL L D FVK LH
Sbjct: 139 GRTXYVIPFSXGPLGSPLSKIGIELTDSPYVVASXRIXTRXGTPVLEAL-GDGEFVKCLH 197
Query: 203 SVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVXXXXXXXXXXXXXKKCFALRIGSTI 261
SVG P+ K WPC+PE T+I H P EI+ KKCFALR S +
Sbjct: 198 SVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRXASRL 257
Query: 262 AKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
AK EGWLAEH L+LGITNPEG+KKY+AAAFPSACGKTNLA NP+LPG+KVECVG
Sbjct: 258 AKEEGWLAEHXLVLGITNPEGEKKYLAAAFPSACGKTNLAXXNPSLPGWKVECVG 312
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
Length = 608
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 161/293 (54%), Positives = 208/293 (70%), Gaps = 4/293 (1%)
Query: 26 VSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLAR 85
+SA+ + F++ V LC+P +V +CDGSE E KEL+ + D L P+PKY+NCWLAR
Sbjct: 5 LSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLAR 64
Query: 86 TNPADVARVESKTFICTQEKAETVPDTKPGVKGT-LGNWISPQDYEEAIMQRFPGCMKGR 144
T+P DVARVESKT + T E+++ VP P LGNW+SP ++ A+ +RFPGCM GR
Sbjct: 65 TDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGCMAGR 124
Query: 145 TMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSV 204
+YVIPFSMGP SPL+K+GV++TDSPYVV SMRIMTR+G VL LD D FV+ LHSV
Sbjct: 125 PLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVGPAVLQRLDDD--FVRCLHSV 182
Query: 205 GTPVSGKHEF-PEWPCDPERTIILHKPAANEIVXXXXXXXXXXXXXKKCFALRIGSTIAK 263
G P+ WPCDP R ++ H P+ IV KKCFALRI S +A+
Sbjct: 183 GRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASRMAQ 242
Query: 264 REGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
++GWLAEHMLILG+T+P G+K+Y+AAAFPSACGKTNLAM+ P+LPG+++ CVG
Sbjct: 243 QQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVG 295
>pdb|2ZCI|A Chain A, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|B Chain B, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|C Chain C, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|D Chain D, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
Length = 610
Score = 260 bits (664), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/287 (46%), Positives = 182/287 (63%), Gaps = 12/287 (4%)
Query: 32 KLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPA 89
+L ++I + VEL QP V DGS+ E+ + + +V+ TL + K N +LAR+NP+
Sbjct: 19 ELLNWIADAVELFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRPNSYLARSNPS 78
Query: 90 DVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVI 149
DVARVES+TFIC++++ + P NW PQ ++ + + + G MKGRTMYV+
Sbjct: 79 DVARVESRTFICSEKEEDAGPTN---------NWAPPQAMKDEMSKHYAGSMKGRTMYVV 129
Query: 150 PFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVS 209
PF MGP+ P K+GV++TDS YVV SMRIMTR+G L+ + A+ FV+ LHSVG P+
Sbjct: 130 PFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMGIEALDKIGANGSFVRCLHSVGAPLE 189
Query: 210 GKHEFPEWPCDPERTIILHKPAANEIVXXXXXXXXXXXXXKKCFALRIGSTIAKREGWLA 269
E WPC+ + I P EI KKC+ALRI S +A+ EGW+A
Sbjct: 190 PGQEDVAWPCN-DTKYITQFPETKEIWSYGSGYGGNAILAKKCYALRIASVMAREEGWMA 248
Query: 270 EHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
EHMLIL + NPEG+ +IAAAFPSACGKTNLAM+ PT+PG+ + VG
Sbjct: 249 EHMLILKLINPEGKAYHIAAAFPSACGKTNLAMITPTIPGWTAQVVG 295
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum
Transferrin
Length = 696
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 60 KELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
++ +L+ +D T RPV YENC+LA+ + A VAR
Sbjct: 224 RDQYELLCRDNTRRPVDDYENCYLAQVPSHAVVAR 258
>pdb|3MC2|A Chain A, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|B Chain B, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|C Chain C, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
pdb|3MC2|D Chain D, Crystal Structure Of The Murine Inhibitor Of Carbonic
Anhydrase
Length = 687
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 60 KELIDLMVKDKTLRPVPKYENCWLAR 85
++ +L+ D T RPV +YE C+LAR
Sbjct: 226 RDQYELLCMDNTRRPVEEYEQCYLAR 251
>pdb|1TFD|A Chain A, High-Resolution X-Ray Studies On Rabbit Serum Transferrin:
Preliminary Structure Analysis Of The N-Terminal Half-
Molecule At 2.3 Angstroms Resolution
Length = 304
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 57 REYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
++ ++ +L+ D T +PV +YE C LAR + A VAR
Sbjct: 217 KDERDQYELLCLDNTRKPVDEYEQCHLARVPSHAVVAR 254
>pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resolution
Length = 676
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 57 REYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
++ ++ +L+ D T +PV +YE C LAR + A VAR
Sbjct: 217 KDERDQYELLCLDNTRKPVDEYEQCHLARVPSHAVVAR 254
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound
Sulfate Ions
Length = 342
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 218 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 260
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 574 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 616
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 555 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 597
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 555 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 597
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 552 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 594
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 555 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 597
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 343
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 219 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 261
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated)
pdb|2HAU|B Chain B, Apo-Human Serum Transferrin (Non-Glycosylated)
Length = 676
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 552 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 594
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 693
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 55 SEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVARVESKTFI 100
+E++Y +L+ D T +PV +Y NC LAR N A V R + + +
Sbjct: 569 NEKDY----ELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV 611
>pdb|1LGB|C Chain C, Interaction Of A Legume Lectin With The N2 Fragment Of
Human Lactotransferrin Or With The Isolated Biantennary
Glycopeptide: Role Of The Fucose Moiety
Length = 159
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLAR 85
D S+ ++ +L+ D T +PV K+++C LAR
Sbjct: 127 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLAR 159
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 691
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of
Apolactoferrin, A Protein Displaying Large-Scale
Conformational Change
Length = 691
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin
Length = 691
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA|A Chain A, Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure
Of Human Copper-lactoferrin At 2.1 Angstroms Resolution
Length = 691
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The
Milk Of Transgenic Cows
Length = 692
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 218 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 259
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution
Using Crystals Grown At Ph 6.5
Length = 691
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1H44|A Chain A, R210l N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 218 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 259
>pdb|1VFD|A Chain A, Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121
Replaced By Glu (R121e)
Length = 330
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 218 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 259
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A
Resolution
Length = 690
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 216 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 257
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121
Replaced By Ser (r121s)
Length = 333
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1DSN|A Chain A, D60s N-Terminal Lobe Human Lactoferrin
Length = 333
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1H43|A Chain A, R210e N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 218 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 259
>pdb|1LCT|A Chain A, Structure Of The Recombinant N-Terminal Lobe Of Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 333
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1H45|A Chain A, R210g N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 218 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 259
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form.
pdb|1L5T|B Chain B, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form
Length = 332
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 258
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 218 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 259
>pdb|2PMS|A Chain A, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
pdb|2PMS|B Chain B, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
Length = 344
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLART-NPADVAR 93
D S+ ++ +L+ D T +PV K+++C LAR + A VAR
Sbjct: 218 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVAR 259
>pdb|1HSE|A Chain A, H253m N Terminal Lobe Of Human Lactoferrin
Length = 334
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 53 DGSEREYKELIDLMVKDKTLRPVPKYENCWLAR 85
D S+ ++ +L+ D T +PV K+++C LAR
Sbjct: 217 DLSDEAERDEYELLCPDNTRKPVDKFKDCHLAR 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,648,402
Number of Sequences: 62578
Number of extensions: 383084
Number of successful extensions: 925
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 51
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)