Query psy13078
Match_columns 325
No_of_seqs 125 out of 384
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 18:51:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3749|consensus 100.0 6E-144 1E-148 1067.2 22.9 309 12-321 23-332 (640)
2 cd00819 PEPCK_GTP Phosphoenolp 100.0 3E-139 7E-144 1052.5 27.4 278 33-321 1-278 (579)
3 PF00821 PEPCK: Phosphoenolpyr 100.0 1E-139 2E-144 1059.4 19.0 278 35-321 1-280 (586)
4 PRK04210 phosphoenolpyruvate c 100.0 2E-138 4E-143 1049.1 27.8 284 28-321 8-293 (601)
5 COG1274 PckA Phosphoenolpyruva 100.0 4E-133 8E-138 993.9 23.2 291 20-320 7-299 (608)
6 cd01919 PEPCK Phosphoenolpyruv 100.0 4.7E-61 1E-65 484.1 18.6 246 47-321 1-248 (515)
7 PRK09344 phosphoenolpyruvate c 98.0 0.00017 3.6E-09 74.9 15.9 234 43-321 13-256 (526)
8 PF01293 PEPCK_ATP: Phosphoeno 98.0 0.00012 2.7E-09 74.8 14.5 224 60-319 11-239 (466)
9 PTZ00311 phosphoenolpyruvate c 98.0 0.00039 8.4E-09 72.6 17.5 242 44-322 39-288 (561)
10 PLN02597 phosphoenolpyruvate c 97.7 0.0013 2.8E-08 68.7 16.2 245 41-321 27-277 (555)
11 cd00820 PEPCK_HprK Phosphoenol 97.7 1.4E-05 3.1E-10 66.9 1.1 49 266-321 1-49 (107)
12 cd00484 PEPCK_ATP Phosphoenolp 97.5 0.008 1.7E-07 62.4 17.7 221 60-321 10-240 (508)
13 TIGR00224 pckA phosphoenolpyru 96.5 0.072 1.6E-06 55.8 14.5 233 47-319 19-262 (532)
14 COG3842 PotA ABC-type spermidi 89.3 0.25 5.5E-06 49.3 2.5 40 279-321 28-71 (352)
15 COG1167 ARO8 Transcriptional r 83.6 3.2 6.9E-05 42.1 6.9 108 28-162 132-246 (459)
16 cd01394 radB RadB. The archaea 83.5 0.68 1.5E-05 41.1 1.9 34 280-315 17-53 (218)
17 PRK06696 uridine kinase; Valid 83.5 0.74 1.6E-05 41.7 2.1 39 281-319 19-61 (223)
18 PRK09270 nucleoside triphospha 83.2 0.87 1.9E-05 41.4 2.4 22 281-302 30-51 (229)
19 cd00009 AAA The AAA+ (ATPases 83.0 1 2.3E-05 34.9 2.5 23 279-303 16-38 (151)
20 COG1117 PstB ABC-type phosphat 82.4 1.2 2.5E-05 43.0 3.0 34 278-313 29-66 (253)
21 cd01393 recA_like RecA is a b 81.5 0.92 2E-05 40.2 1.9 23 280-304 17-39 (226)
22 TIGR00554 panK_bact pantothena 81.4 1.2 2.6E-05 43.3 2.7 36 283-318 61-101 (290)
23 COG4525 TauB ABC-type taurine 80.1 1 2.2E-05 43.2 1.7 16 286-301 33-48 (259)
24 COG1136 SalX ABC-type antimicr 79.8 1.3 2.8E-05 41.9 2.3 37 280-320 29-70 (226)
25 cd00983 recA RecA is a bacter 79.3 1.1 2.4E-05 44.3 1.8 22 280-303 53-74 (325)
26 COG1116 TauB ABC-type nitrate/ 78.4 1.3 2.7E-05 42.7 1.8 38 279-319 26-67 (248)
27 TIGR03864 PQQ_ABC_ATP ABC tran 78.3 1.8 3.9E-05 39.1 2.8 38 280-320 25-66 (236)
28 PLN02165 adenylate isopentenyl 77.5 1.1 2.4E-05 44.7 1.2 35 278-316 39-73 (334)
29 PF05496 RuvB_N: Holliday junc 76.1 0.93 2E-05 43.2 0.3 37 255-306 36-72 (233)
30 COG4619 ABC-type uncharacteriz 75.7 3.3 7.2E-05 39.0 3.7 36 281-319 28-67 (223)
31 PRK09354 recA recombinase A; P 75.7 1.6 3.5E-05 43.6 1.8 22 280-303 58-79 (349)
32 cd03298 ABC_ThiQ_thiamine_tran 75.6 3.6 7.9E-05 36.3 3.9 41 277-320 19-63 (211)
33 PLN02348 phosphoribulokinase 75.4 1.9 4E-05 44.0 2.2 21 282-302 47-67 (395)
34 TIGR02012 tigrfam_recA protein 75.1 1.7 3.7E-05 42.9 1.8 21 280-302 53-73 (321)
35 KOG0951|consensus 75.1 1.9 4.2E-05 49.9 2.4 43 246-304 303-345 (1674)
36 TIGR02236 recomb_radA DNA repa 74.9 1.8 3.9E-05 41.0 1.9 21 280-302 93-113 (310)
37 PRK04301 radA DNA repair and r 74.8 1.8 3.9E-05 41.5 1.9 21 280-302 100-120 (317)
38 PRK10895 lipopolysaccharide AB 74.8 2.8 6.1E-05 37.9 3.0 38 280-320 27-68 (241)
39 PRK10419 nikE nickel transport 74.0 3.1 6.7E-05 38.7 3.1 38 280-320 36-77 (268)
40 cd01123 Rad51_DMC1_radA Rad51_ 73.9 2.2 4.7E-05 38.1 2.0 23 280-304 17-39 (235)
41 cd03238 ABC_UvrA The excision 73.8 2.5 5.5E-05 37.7 2.4 38 277-317 16-53 (176)
42 cd03250 ABCC_MRP_domain1 Domai 73.6 2.1 4.7E-05 37.7 1.9 32 277-310 26-61 (204)
43 cd03235 ABC_Metallic_Cations A 73.5 2.5 5.3E-05 37.5 2.3 22 280-303 23-44 (213)
44 TIGR00960 3a0501s02 Type II (G 73.5 2.5 5.4E-05 37.5 2.3 39 278-319 25-67 (216)
45 PRK08084 DNA replication initi 73.4 2.5 5.4E-05 38.9 2.3 23 279-303 42-64 (235)
46 TIGR02868 CydC thiol reductant 73.3 2.1 4.5E-05 43.4 1.9 26 277-304 356-381 (529)
47 TIGR03878 thermo_KaiC_2 KaiC d 73.2 2 4.4E-05 40.2 1.8 35 280-316 34-71 (259)
48 PRK11308 dppF dipeptide transp 73.0 4.2 9E-05 39.5 3.9 41 277-320 36-80 (327)
49 cd03264 ABC_drug_resistance_li 72.7 3.2 6.8E-05 36.7 2.8 35 282-320 26-64 (211)
50 COG3839 MalK ABC-type sugar tr 72.6 2.1 4.6E-05 42.7 1.8 37 280-319 27-67 (338)
51 cd03226 ABC_cobalt_CbiO_domain 72.3 2.7 5.9E-05 37.1 2.2 37 280-319 24-64 (205)
52 cd03301 ABC_MalK_N The N-termi 72.2 3.4 7.3E-05 36.5 2.8 38 280-320 24-65 (213)
53 PRK10575 iron-hydroxamate tran 72.2 3.5 7.5E-05 38.2 3.0 38 280-320 35-76 (265)
54 cd03255 ABC_MJ0796_Lo1CDE_FtsE 72.2 2.7 5.9E-05 37.2 2.3 39 278-319 26-68 (218)
55 cd03299 ABC_ModC_like Archeal 71.9 3.6 7.7E-05 37.3 3.0 39 280-321 23-65 (235)
56 TIGR02315 ABC_phnC phosphonate 71.6 2.9 6.2E-05 37.7 2.3 40 277-319 23-66 (243)
57 PRK14247 phosphate ABC transpo 71.6 2.9 6.2E-05 38.0 2.3 38 280-320 27-73 (250)
58 cd03225 ABC_cobalt_CbiO_domain 71.5 2.9 6.3E-05 36.9 2.2 37 280-319 25-65 (211)
59 TIGR03881 KaiC_arch_4 KaiC dom 71.4 2.6 5.5E-05 37.8 1.9 35 280-316 18-55 (229)
60 PLN03046 D-glycerate 3-kinase; 71.2 3.9 8.5E-05 42.6 3.4 48 268-316 197-247 (460)
61 PRK10418 nikD nickel transport 71.2 3.9 8.5E-05 37.5 3.1 37 280-319 27-71 (254)
62 TIGR03238 dnd_assoc_3 dnd syst 70.9 5.6 0.00012 41.9 4.5 42 277-320 27-70 (504)
63 PRK03846 adenylylsulfate kinas 70.9 3.1 6.7E-05 36.9 2.3 41 278-320 20-64 (198)
64 cd03261 ABC_Org_Solvent_Resist 70.7 3.1 6.7E-05 37.5 2.3 40 277-319 21-64 (235)
65 cd03258 ABC_MetN_methionine_tr 70.7 4.1 8.8E-05 36.6 3.0 41 277-320 26-70 (233)
66 cd03260 ABC_PstB_phosphate_tra 70.5 3.2 6.9E-05 37.1 2.3 39 278-319 22-69 (227)
67 COG1125 OpuBA ABC-type proline 70.3 3 6.6E-05 41.2 2.3 41 277-320 22-66 (309)
68 PF00910 RNA_helicase: RNA hel 70.2 1.8 3.9E-05 35.0 0.6 13 291-303 5-17 (107)
69 cd03247 ABCC_cytochrome_bd The 70.2 3.3 7.3E-05 35.8 2.3 40 277-319 23-66 (178)
70 COG1124 DppF ABC-type dipeptid 70.1 2.8 6E-05 40.6 1.9 25 277-303 28-52 (252)
71 cd03270 ABC_UvrA_I The excisio 70.1 3.4 7.4E-05 37.6 2.4 23 277-301 16-38 (226)
72 cd03293 ABC_NrtD_SsuB_transpor 70.1 3.1 6.6E-05 37.1 2.1 39 278-319 26-68 (220)
73 PRK08533 flagellar accessory p 69.7 3.2 6.9E-05 38.3 2.2 35 280-316 22-59 (230)
74 PRK09361 radB DNA repair and r 69.7 3 6.4E-05 37.3 1.9 35 280-316 21-58 (225)
75 cd03224 ABC_TM1139_LivF_branch 69.2 3.4 7.3E-05 36.7 2.1 37 280-319 24-64 (222)
76 cd03268 ABC_BcrA_bacitracin_re 69.1 3.5 7.6E-05 36.3 2.2 38 280-320 24-65 (208)
77 TIGR02857 CydD thiol reductant 68.9 4.2 9.2E-05 41.2 3.0 41 277-320 343-387 (529)
78 PRK11124 artP arginine transpo 68.8 3.6 7.7E-05 37.2 2.3 37 280-319 26-66 (242)
79 cd03273 ABC_SMC2_euk Eukaryoti 68.7 2 4.4E-05 39.4 0.6 13 289-301 30-42 (251)
80 cd03256 ABC_PhnC_transporter A 68.6 3.8 8.3E-05 36.8 2.4 39 278-319 23-65 (241)
81 KOG1970|consensus 68.5 2.9 6.2E-05 44.8 1.8 46 263-312 93-138 (634)
82 PRK05439 pantothenate kinase; 68.5 6.1 0.00013 38.9 4.0 36 281-316 83-123 (311)
83 TIGR03608 L_ocin_972_ABC putat 68.4 3.6 7.8E-05 36.0 2.1 37 280-319 22-62 (206)
84 cd03269 ABC_putative_ATPase Th 68.3 3.2 7E-05 36.6 1.9 22 280-303 24-45 (210)
85 PTZ00035 Rad51 protein; Provis 68.3 3.1 6.6E-05 41.0 1.8 22 280-303 116-137 (337)
86 KOG0060|consensus 67.9 3.6 7.9E-05 44.3 2.4 24 276-301 455-478 (659)
87 PRK11701 phnK phosphonate C-P 67.7 5 0.00011 36.8 3.0 36 280-318 30-69 (258)
88 cd03245 ABCC_bacteriocin_expor 67.7 4 8.6E-05 36.2 2.3 40 277-319 25-68 (220)
89 cd03254 ABCC_Glucan_exporter_l 67.6 3.5 7.5E-05 36.8 1.9 40 277-319 24-67 (229)
90 TIGR01978 sufC FeS assembly AT 67.5 4 8.6E-05 36.7 2.3 37 280-319 24-66 (243)
91 PF03215 Rad17: Rad17 cell cyc 67.5 4.3 9.4E-05 42.5 2.8 33 264-302 31-63 (519)
92 cd03257 ABC_NikE_OppD_transpor 67.3 3.5 7.6E-05 36.6 1.9 39 278-319 27-69 (228)
93 COG1127 Ttg2A ABC-type transpo 67.2 7 0.00015 38.1 3.9 43 277-322 29-75 (263)
94 cd03259 ABC_Carb_Solutes_like 67.1 4.1 9E-05 36.0 2.3 40 277-319 21-64 (213)
95 cd03266 ABC_NatA_sodium_export 67.0 3.6 7.8E-05 36.5 1.9 36 278-316 27-66 (218)
96 PRK11629 lolD lipoprotein tran 67.0 4 8.8E-05 36.8 2.2 39 278-319 31-73 (233)
97 TIGR02673 FtsE cell division A 67.0 4.2 9E-05 36.0 2.3 38 280-320 26-67 (214)
98 cd03248 ABCC_TAP TAP, the Tran 67.0 4.2 9E-05 36.3 2.3 36 280-318 38-77 (226)
99 PF00005 ABC_tran: ABC transpo 67.0 3.7 7.9E-05 33.4 1.8 21 280-302 9-29 (137)
100 PRK11607 potG putrescine trans 66.8 6.8 0.00015 39.0 4.0 38 280-320 43-84 (377)
101 PRK11174 cysteine/glutathione 66.7 3.8 8.3E-05 42.0 2.3 40 277-320 371-414 (588)
102 cd03252 ABCC_Hemolysin The ABC 66.6 5.3 0.00011 36.0 2.9 39 278-319 24-66 (237)
103 cd03223 ABCD_peroxisomal_ALDP 66.6 4.4 9.6E-05 35.0 2.3 21 280-302 25-45 (166)
104 KOG0733|consensus 66.5 3.6 7.9E-05 44.8 2.1 29 271-303 214-242 (802)
105 TIGR03410 urea_trans_UrtE urea 66.5 4.3 9.4E-05 36.3 2.3 37 280-319 24-64 (230)
106 cd03230 ABC_DR_subfamily_A Thi 66.2 4.4 9.5E-05 35.0 2.2 39 278-319 22-64 (173)
107 PRK06620 hypothetical protein; 66.1 4.4 9.4E-05 37.1 2.3 23 279-303 41-63 (214)
108 TIGR02142 modC_ABC molybdenum 66.1 7.3 0.00016 38.1 4.0 40 277-319 18-61 (354)
109 cd01918 HprK_C HprK/P, the bif 66.1 1.8 4E-05 38.3 -0.2 33 282-319 14-46 (149)
110 cd03219 ABC_Mj1267_LivG_branch 66.1 4.3 9.3E-05 36.4 2.2 40 277-319 21-64 (236)
111 cd03262 ABC_HisP_GlnQ_permease 66.0 4.5 9.8E-05 35.6 2.3 37 280-319 24-64 (213)
112 cd03296 ABC_CysA_sulfate_impor 65.9 4.4 9.6E-05 36.6 2.3 40 277-319 23-66 (239)
113 cd03272 ABC_SMC3_euk Eukaryoti 65.3 4.7 0.0001 36.3 2.3 18 281-300 22-39 (243)
114 COG4003 Uncharacterized protei 65.1 10 0.00022 31.8 3.9 40 23-75 27-66 (98)
115 cd03216 ABC_Carb_Monos_I This 65.1 4.7 0.0001 34.7 2.2 39 279-320 23-65 (163)
116 PLN02318 phosphoribulokinase/u 65.1 4.5 9.7E-05 43.8 2.4 22 283-304 64-85 (656)
117 TIGR03538 DapC_gpp succinyldia 64.8 65 0.0014 31.2 10.1 119 30-175 66-210 (393)
118 TIGR03005 ectoine_ehuA ectoine 64.8 4.8 0.0001 36.7 2.3 38 280-320 24-65 (252)
119 PF13401 AAA_22: AAA domain; P 64.7 3.5 7.6E-05 32.9 1.2 17 284-302 6-22 (131)
120 PRK14261 phosphate ABC transpo 64.6 4.8 0.0001 36.7 2.3 22 280-303 30-51 (253)
121 cd03214 ABC_Iron-Siderophores_ 64.6 5.1 0.00011 34.9 2.3 38 280-320 23-64 (180)
122 TIGR00972 3a0107s01c2 phosphat 64.6 4.9 0.00011 36.6 2.3 42 277-320 22-71 (247)
123 COG4608 AppF ABC-type oligopep 64.5 4.5 9.7E-05 39.4 2.1 42 277-321 34-79 (268)
124 PF08423 Rad51: Rad51; InterP 64.3 3.8 8.1E-05 38.6 1.5 21 280-302 36-56 (256)
125 PRK11248 tauB taurine transpor 64.3 4.9 0.00011 37.2 2.3 37 280-319 25-65 (255)
126 PRK11432 fbpC ferric transport 64.2 4.8 0.0001 39.6 2.3 41 277-320 27-71 (351)
127 TIGR03877 thermo_KaiC_1 KaiC d 63.9 4.6 0.0001 37.0 2.0 34 280-315 19-55 (237)
128 cd03251 ABCC_MsbA MsbA is an e 63.7 5.2 0.00011 35.8 2.3 40 278-320 24-67 (234)
129 COG1126 GlnQ ABC-type polar am 63.3 5.4 0.00012 38.4 2.4 40 279-321 25-68 (240)
130 PRK11247 ssuB aliphatic sulfon 63.3 5.2 0.00011 37.4 2.3 21 280-302 36-56 (257)
131 cd00267 ABC_ATPase ABC (ATP-bi 63.1 5.6 0.00012 33.6 2.3 25 277-303 20-44 (157)
132 cd03228 ABCC_MRP_Like The MRP 63.1 5.6 0.00012 34.3 2.3 40 277-319 23-66 (171)
133 PRK10416 signal recognition pa 63.1 4 8.7E-05 39.9 1.5 38 280-319 112-152 (318)
134 PRK10247 putative ABC transpor 63.1 5.7 0.00012 35.8 2.4 40 277-319 28-71 (225)
135 cd03233 ABC_PDR_domain1 The pl 63.0 5.4 0.00012 35.5 2.2 38 280-320 31-75 (202)
136 PRK13539 cytochrome c biogenes 62.9 5.5 0.00012 35.4 2.3 37 280-319 26-66 (207)
137 cd03246 ABCC_Protease_Secretio 62.9 5.7 0.00012 34.3 2.3 39 278-319 24-66 (173)
138 PRK08068 transaminase; Reviewe 62.8 39 0.00084 32.7 8.2 117 30-173 72-210 (389)
139 PRK09452 potA putrescine/sperm 62.8 5.1 0.00011 40.0 2.2 37 280-319 38-78 (375)
140 TIGR01242 26Sp45 26S proteasom 62.7 4.4 9.6E-05 39.4 1.8 26 274-303 150-175 (364)
141 cd03218 ABC_YhbG The ABC trans 62.7 5.5 0.00012 35.6 2.2 37 280-319 24-64 (232)
142 cd03265 ABC_DrrA DrrA is the A 62.7 4.9 0.00011 35.8 1.9 37 280-319 24-64 (220)
143 PRK10908 cell division protein 62.7 5.6 0.00012 35.5 2.3 38 280-320 26-67 (222)
144 TIGR03797 NHPM_micro_ABC2 NHPM 62.5 5.1 0.00011 42.2 2.3 40 277-319 474-517 (686)
145 TIGR02211 LolD_lipo_ex lipopro 62.5 5.6 0.00012 35.3 2.2 37 280-319 29-69 (221)
146 PRK13541 cytochrome c biogenes 62.4 5.7 0.00012 34.9 2.2 37 280-319 24-64 (195)
147 PRK10744 pstB phosphate transp 62.2 5.6 0.00012 36.6 2.2 22 280-303 37-58 (260)
148 PRK07366 succinyldiaminopimela 62.1 51 0.0011 31.8 8.8 106 30-162 70-184 (388)
149 PF13481 AAA_25: AAA domain; P 62.1 5.1 0.00011 34.4 1.8 21 280-302 30-50 (193)
150 TIGR01192 chvA glucan exporter 62.1 6.5 0.00014 40.8 3.0 40 277-319 356-399 (585)
151 PRK04328 hypothetical protein; 62.0 5.2 0.00011 37.2 2.0 21 280-302 21-41 (249)
152 PRK13649 cbiO cobalt transport 62.0 5.6 0.00012 37.0 2.2 37 280-319 31-71 (280)
153 PLN02796 D-glycerate 3-kinase 62.0 5.1 0.00011 40.2 2.1 20 284-303 100-119 (347)
154 PF13191 AAA_16: AAA ATPase do 61.9 5.5 0.00012 33.4 2.0 19 282-302 24-42 (185)
155 PRK14274 phosphate ABC transpo 61.9 5.8 0.00012 36.4 2.3 25 278-304 34-58 (259)
156 PLN02231 alanine transaminase 61.8 36 0.00078 35.5 8.2 124 30-174 170-315 (534)
157 PRK11650 ugpC glycerol-3-phosp 61.7 5.6 0.00012 39.2 2.3 41 277-320 25-69 (356)
158 PRK11144 modC molybdate transp 61.7 5.7 0.00012 38.9 2.3 41 277-320 19-63 (352)
159 PRK11264 putative amino-acid A 61.6 5.9 0.00013 35.9 2.3 37 280-319 27-67 (250)
160 cd03369 ABCC_NFT1 Domain 2 of 61.5 6.2 0.00013 34.9 2.3 37 280-319 32-72 (207)
161 cd02019 NK Nucleoside/nucleoti 61.5 5.1 0.00011 30.0 1.5 26 290-315 5-31 (69)
162 cd03222 ABC_RNaseL_inhibitor T 61.4 5.7 0.00012 35.5 2.1 21 280-302 23-43 (177)
163 PRK11176 lipid transporter ATP 61.4 5.6 0.00012 40.7 2.3 24 277-302 364-387 (582)
164 CHL00131 ycf16 sulfate ABC tra 61.3 6 0.00013 35.9 2.2 37 280-319 31-73 (252)
165 cd03229 ABC_Class3 This class 61.3 6.3 0.00014 34.2 2.3 40 277-319 21-64 (178)
166 cd03292 ABC_FtsE_transporter F 61.3 6.1 0.00013 34.8 2.2 38 280-320 25-66 (214)
167 PRK13640 cbiO cobalt transport 61.2 5.9 0.00013 37.2 2.2 41 277-319 28-74 (282)
168 PRK13540 cytochrome c biogenes 61.0 6.3 0.00014 34.8 2.3 38 280-320 25-66 (200)
169 TIGR01193 bacteriocin_ABC ABC- 61.0 5 0.00011 42.4 1.9 26 277-304 495-520 (708)
170 cd03271 ABC_UvrA_II The excisi 60.9 6.4 0.00014 37.5 2.4 25 276-302 15-39 (261)
171 COG1222 RPT1 ATP-dependent 26S 60.9 4.9 0.00011 41.2 1.7 42 254-302 162-203 (406)
172 PRK06067 flagellar accessory p 60.8 5.9 0.00013 35.8 2.1 35 280-316 23-60 (234)
173 KOG0730|consensus 60.8 4.5 9.8E-05 43.9 1.5 61 231-304 428-488 (693)
174 cd03295 ABC_OpuCA_Osmoprotecti 60.7 6.4 0.00014 35.7 2.3 41 277-320 22-66 (242)
175 PRK14250 phosphate ABC transpo 60.6 6.3 0.00014 35.8 2.3 38 280-320 27-68 (241)
176 TIGR02204 MsbA_rel ABC transpo 60.6 5.2 0.00011 40.8 1.9 25 277-303 361-385 (576)
177 TIGR02203 MsbA_lipidA lipid A 60.6 5.2 0.00011 40.7 1.9 26 277-304 353-378 (571)
178 PRK14273 phosphate ABC transpo 60.3 6.4 0.00014 36.0 2.3 20 280-301 31-50 (254)
179 PRK14256 phosphate ABC transpo 60.2 6.4 0.00014 35.9 2.2 39 280-320 28-74 (252)
180 PRK09087 hypothetical protein; 60.0 6.6 0.00014 36.2 2.3 21 282-304 44-64 (226)
181 PRK14259 phosphate ABC transpo 59.9 6.5 0.00014 36.6 2.3 22 280-303 37-58 (269)
182 cd03263 ABC_subfamily_A The AB 59.9 6.7 0.00015 34.8 2.3 37 280-319 26-66 (220)
183 COG4178 ABC-type uncharacteriz 59.7 6.2 0.00013 42.4 2.3 18 281-300 418-435 (604)
184 PRK13638 cbiO cobalt transport 59.6 6.6 0.00014 36.5 2.2 37 280-319 25-65 (271)
185 PRK13632 cbiO cobalt transport 59.4 6.8 0.00015 36.5 2.3 37 280-319 33-73 (271)
186 PRK13657 cyclic beta-1,2-gluca 59.4 6.3 0.00014 40.6 2.3 24 278-303 357-380 (588)
187 cd03221 ABCF_EF-3 ABCF_EF-3 E 59.4 7.3 0.00016 33.0 2.3 21 280-302 24-44 (144)
188 PRK10789 putative multidrug tr 59.4 5.6 0.00012 41.1 1.9 24 278-303 337-360 (569)
189 PRK09493 glnQ glutamine ABC tr 59.3 6.9 0.00015 35.3 2.3 38 280-320 25-66 (240)
190 PRK13648 cbiO cobalt transport 59.1 6 0.00013 36.7 1.9 39 278-319 31-73 (269)
191 TIGR02881 spore_V_K stage V sp 59.0 6.4 0.00014 36.5 2.1 19 285-303 43-61 (261)
192 PRK15481 transcriptional regul 58.9 46 0.001 32.8 8.1 118 30-175 123-258 (431)
193 PRK11831 putative ABC transpor 58.5 7.1 0.00015 36.3 2.3 40 277-319 28-71 (269)
194 PRK05973 replicative DNA helic 58.4 6.5 0.00014 37.2 2.0 34 280-315 62-98 (237)
195 KOG0727|consensus 58.3 5.8 0.00013 39.5 1.7 85 223-319 139-225 (408)
196 PRK14267 phosphate ABC transpo 58.2 7.3 0.00016 35.5 2.3 23 280-304 28-50 (253)
197 COG0396 sufC Cysteine desulfur 58.2 8.4 0.00018 37.3 2.7 34 278-313 26-59 (251)
198 PRK14262 phosphate ABC transpo 58.1 6.4 0.00014 35.8 1.9 22 280-303 27-48 (250)
199 cd03294 ABC_Pro_Gly_Bertaine T 57.8 7.4 0.00016 36.2 2.3 40 277-319 45-88 (269)
200 TIGR02324 CP_lyasePhnL phospho 57.8 7.8 0.00017 34.6 2.3 32 280-314 32-67 (224)
201 PTZ00361 26 proteosome regulat 57.5 5.6 0.00012 40.8 1.5 42 275-320 212-254 (438)
202 PRK09183 transposase/IS protei 57.5 6.7 0.00015 36.9 1.9 33 282-316 102-137 (259)
203 PRK10790 putative multidrug tr 57.5 7.1 0.00015 40.2 2.3 41 277-320 362-406 (592)
204 TIGR03265 PhnT2 putative 2-ami 57.5 7.5 0.00016 38.3 2.3 40 278-320 26-69 (353)
205 TIGR02323 CP_lyasePhnK phospho 57.4 7.4 0.00016 35.5 2.1 37 277-316 24-64 (253)
206 cd03278 ABC_SMC_barmotin Barmo 57.3 7.7 0.00017 34.8 2.2 17 286-302 24-40 (197)
207 PRK14242 phosphate transporter 57.3 7.5 0.00016 35.4 2.2 21 280-302 30-50 (253)
208 PF13555 AAA_29: P-loop contai 57.3 9.4 0.0002 29.3 2.4 20 279-300 20-39 (62)
209 PTZ00454 26S protease regulato 57.3 5.9 0.00013 40.0 1.6 25 275-303 174-198 (398)
210 PRK09544 znuC high-affinity zi 57.2 7.7 0.00017 36.0 2.3 24 277-302 25-48 (251)
211 PRK10522 multidrug transporter 57.1 7.2 0.00016 40.0 2.2 26 277-304 344-369 (547)
212 cd03244 ABCC_MRP_domain2 Domai 57.1 8.1 0.00017 34.3 2.3 40 277-319 25-68 (221)
213 COG2884 FtsE Predicted ATPase 57.0 8.1 0.00017 36.8 2.3 41 276-320 22-67 (223)
214 TIGR03375 type_I_sec_LssB type 56.8 7.3 0.00016 41.1 2.3 26 277-304 486-511 (694)
215 PRK09984 phosphonate/organopho 56.8 7.9 0.00017 35.6 2.2 37 280-319 28-71 (262)
216 PRK14249 phosphate ABC transpo 56.7 8.1 0.00018 35.2 2.3 39 280-320 28-74 (251)
217 KOG0733|consensus 56.7 6.2 0.00013 43.1 1.7 26 274-303 539-564 (802)
218 cd03290 ABCC_SUR1_N The SUR do 56.6 8.3 0.00018 34.3 2.3 34 280-316 25-62 (218)
219 PRK13538 cytochrome c biogenes 56.5 8.3 0.00018 34.1 2.3 38 279-319 24-65 (204)
220 TIGR00150 HI0065_YjeE ATPase, 56.4 8.6 0.00019 33.4 2.3 20 280-301 20-39 (133)
221 PRK11300 livG leucine/isoleuci 56.4 7.9 0.00017 35.2 2.1 37 280-319 29-69 (255)
222 PRK06893 DNA replication initi 56.3 6.6 0.00014 35.9 1.6 20 283-304 40-59 (229)
223 PLN00020 ribulose bisphosphate 56.2 9.5 0.00021 39.3 2.9 59 233-303 109-167 (413)
224 PRK10771 thiQ thiamine transpo 56.1 8.4 0.00018 34.7 2.3 42 276-320 19-64 (232)
225 PRK13477 bifunctional pantoate 56.1 6.1 0.00013 41.5 1.5 20 285-304 285-304 (512)
226 PRK10584 putative ABC transpor 56.0 8.8 0.00019 34.3 2.4 37 280-319 34-74 (228)
227 cd03234 ABCG_White The White s 56.0 8.1 0.00018 34.7 2.1 37 280-319 31-74 (226)
228 cd03237 ABC_RNaseL_inhibitor_d 56.0 8.4 0.00018 35.7 2.3 20 281-302 24-43 (246)
229 cd03249 ABC_MTABC3_MDL1_MDL2 M 56.0 8.3 0.00018 34.7 2.2 40 277-319 24-67 (238)
230 PRK10253 iron-enterobactin tra 55.9 8.4 0.00018 35.6 2.3 37 280-319 31-71 (265)
231 PRK14239 phosphate transporter 55.9 8.6 0.00019 34.9 2.3 23 280-304 29-51 (252)
232 PF06745 KaiC: KaiC; InterPro 55.8 6.6 0.00014 35.1 1.5 21 280-302 17-37 (226)
233 cd03253 ABCC_ATM1_transporter 55.7 7.5 0.00016 34.9 1.9 39 278-319 23-65 (236)
234 PRK14237 phosphate transporter 55.6 8.5 0.00018 35.7 2.3 40 277-319 41-89 (267)
235 PRK14236 phosphate transporter 55.6 8.5 0.00018 35.8 2.3 38 280-320 49-95 (272)
236 PRK14244 phosphate ABC transpo 55.5 8.7 0.00019 35.0 2.3 22 281-304 30-51 (251)
237 PRK14241 phosphate transporter 55.5 7.3 0.00016 35.8 1.8 22 280-303 28-49 (258)
238 cd03283 ABC_MutS-like MutS-lik 55.5 8.7 0.00019 34.7 2.2 19 281-301 24-42 (199)
239 PRK03992 proteasome-activating 55.5 8.5 0.00018 38.3 2.4 27 273-303 158-184 (389)
240 cd03215 ABC_Carb_Monos_II This 55.5 8.8 0.00019 33.4 2.2 38 280-320 24-65 (182)
241 PLN03187 meiotic recombination 55.4 7.4 0.00016 38.8 1.9 21 280-302 124-144 (344)
242 PRK09473 oppD oligopeptide tra 55.4 6.7 0.00014 38.2 1.6 40 278-320 38-84 (330)
243 PRK11614 livF leucine/isoleuci 55.3 8.6 0.00019 34.7 2.2 36 281-319 30-69 (237)
244 TIGR01277 thiQ thiamine ABC tr 55.2 7.3 0.00016 34.6 1.7 42 276-320 18-63 (213)
245 PRK14243 phosphate transporter 55.2 7.7 0.00017 36.0 1.9 24 278-303 32-55 (264)
246 PRK15056 manganese/iron transp 55.1 8.8 0.00019 35.7 2.3 39 278-319 29-71 (272)
247 TIGR00630 uvra excinuclease AB 55.0 7.7 0.00017 43.5 2.2 25 276-302 16-40 (924)
248 PRK09580 sufC cysteine desulfu 55.0 8.9 0.00019 34.6 2.2 37 280-319 25-67 (248)
249 PRK00349 uvrA excinuclease ABC 54.9 7.8 0.00017 43.5 2.2 25 276-302 20-44 (943)
250 PRK11153 metN DL-methionine tr 54.9 8.5 0.00018 37.5 2.2 40 278-320 27-70 (343)
251 PRK14240 phosphate transporter 54.9 9 0.0002 34.8 2.3 23 280-304 27-49 (250)
252 PRK07550 hypothetical protein; 54.8 89 0.0019 30.1 9.2 107 30-161 69-181 (386)
253 cd03267 ABC_NatA_like Similar 54.8 8.9 0.00019 34.9 2.2 36 280-318 45-84 (236)
254 TIGR02655 circ_KaiC circadian 54.6 7.8 0.00017 39.7 2.0 22 280-303 19-40 (484)
255 PRK13543 cytochrome c biogenes 54.5 9.6 0.00021 34.1 2.3 37 280-319 35-75 (214)
256 PRK15112 antimicrobial peptide 54.4 9.1 0.0002 35.5 2.3 40 277-319 34-77 (267)
257 PRK14245 phosphate ABC transpo 54.4 12 0.00026 34.1 3.0 39 280-320 27-73 (250)
258 PRK11231 fecE iron-dicitrate t 54.3 9.2 0.0002 35.0 2.3 37 280-319 26-66 (255)
259 PRK13645 cbiO cobalt transport 54.1 8.8 0.00019 36.0 2.1 37 280-319 35-75 (289)
260 COG1866 PckA Phosphoenolpyruva 53.9 3.1E+02 0.0067 29.4 14.7 226 60-322 28-259 (529)
261 PRK11022 dppD dipeptide transp 53.9 7.8 0.00017 37.6 1.8 25 277-303 28-52 (326)
262 COG1120 FepC ABC-type cobalami 53.8 9.9 0.00022 36.7 2.5 41 277-320 23-67 (258)
263 COG4136 ABC-type uncharacteriz 53.7 9.5 0.00021 35.5 2.2 22 277-300 23-44 (213)
264 cd03236 ABC_RNaseL_inhibitor_d 53.7 9.7 0.00021 35.7 2.3 28 281-310 25-56 (255)
265 TIGR01186 proV glycine betaine 53.6 8.9 0.00019 38.2 2.2 42 277-321 14-59 (363)
266 PRK11000 maltose/maltodextrin 53.5 9.1 0.0002 37.8 2.2 40 277-319 24-67 (369)
267 PRK14266 phosphate ABC transpo 53.3 10 0.00022 34.5 2.3 40 277-319 24-72 (250)
268 TIGR01189 ccmA heme ABC export 53.2 10 0.00022 33.3 2.3 37 280-319 24-64 (198)
269 TIGR03796 NHPM_micro_ABC1 NHPM 53.2 8.2 0.00018 40.8 2.0 41 276-319 499-543 (710)
270 PRK13548 hmuV hemin importer A 53.2 9.7 0.00021 35.2 2.2 38 280-320 26-67 (258)
271 PRK13647 cbiO cobalt transport 53.1 9.7 0.00021 35.6 2.2 38 280-320 29-70 (274)
272 TIGR02238 recomb_DMC1 meiotic 53.1 8.4 0.00018 37.6 1.9 22 280-303 94-115 (313)
273 PRK03695 vitamin B12-transport 53.0 10 0.00022 34.9 2.3 40 277-320 17-60 (248)
274 PTZ00377 alanine aminotransfer 52.9 50 0.0011 33.3 7.4 123 30-173 117-261 (481)
275 PRK10619 histidine/lysine/argi 52.9 10 0.00022 34.8 2.3 40 277-319 26-69 (257)
276 TIGR00968 3a0106s01 sulfate AB 52.8 10 0.00022 34.4 2.3 38 280-320 24-65 (237)
277 TIGR02769 nickel_nikE nickel i 52.6 10 0.00022 35.1 2.3 37 280-319 35-75 (265)
278 TIGR01194 cyc_pep_trnsptr cycl 52.5 8.5 0.00018 39.7 1.9 40 277-319 363-406 (555)
279 TIGR02239 recomb_RAD51 DNA rep 52.4 8.5 0.00018 37.5 1.8 21 280-302 94-114 (316)
280 PRK14238 phosphate transporter 52.2 10 0.00023 35.3 2.3 24 278-303 46-69 (271)
281 TIGR03873 F420-0_ABC_ATP propo 52.1 11 0.00023 34.7 2.3 37 280-319 25-65 (256)
282 TIGR02982 heterocyst_DevA ABC 52.0 11 0.00024 33.7 2.3 37 280-319 29-69 (220)
283 TIGR03258 PhnT 2-aminoethylpho 51.8 11 0.00023 37.5 2.3 38 280-320 29-72 (362)
284 TIGR01188 drrA daunorubicin re 51.8 11 0.00023 35.9 2.3 40 277-319 14-57 (302)
285 PRK14254 phosphate ABC transpo 51.8 11 0.00023 35.7 2.3 21 280-302 63-83 (285)
286 TIGR01842 type_I_sec_PrtD type 51.5 9.3 0.0002 39.1 2.0 40 277-319 339-382 (544)
287 PRK08903 DnaA regulatory inact 51.5 11 0.00025 33.6 2.3 34 281-316 41-77 (227)
288 PRK10070 glycine betaine trans 51.4 9.7 0.00021 38.5 2.1 38 280-320 52-93 (400)
289 PRK14265 phosphate ABC transpo 51.4 11 0.00024 35.2 2.3 38 280-319 44-89 (274)
290 PRK07324 transaminase; Validat 51.2 53 0.0011 31.9 7.0 108 29-161 63-171 (373)
291 PRK13547 hmuV hemin importer A 51.2 11 0.00025 35.4 2.4 21 280-302 25-45 (272)
292 TIGR03411 urea_trans_UrtD urea 51.1 11 0.00025 33.9 2.3 37 280-319 26-66 (242)
293 PRK08960 hypothetical protein; 51.0 98 0.0021 29.9 8.8 105 30-161 71-183 (387)
294 COG0529 CysC Adenylylsulfate k 51.0 9.9 0.00021 35.7 1.9 39 279-319 20-62 (197)
295 cd03232 ABC_PDR_domain2 The pl 51.0 11 0.00024 33.2 2.1 21 280-302 31-51 (192)
296 COG1132 MdlB ABC-type multidru 50.8 9.7 0.00021 39.1 2.0 27 277-305 350-376 (567)
297 PRK14253 phosphate ABC transpo 50.8 12 0.00025 34.1 2.3 38 280-320 27-73 (249)
298 PLN03186 DNA repair protein RA 50.6 9.3 0.0002 38.0 1.8 21 280-302 121-141 (342)
299 PRK13650 cbiO cobalt transport 50.6 11 0.00024 35.4 2.2 38 280-320 31-72 (279)
300 PF01695 IstB_IS21: IstB-like 50.3 11 0.00024 33.6 2.0 33 281-315 46-81 (178)
301 COG0467 RAD55 RecA-superfamily 50.3 11 0.00023 34.8 2.0 21 280-302 21-41 (260)
302 PRK14251 phosphate ABC transpo 50.2 12 0.00026 34.0 2.3 22 280-303 28-49 (251)
303 PRK14275 phosphate ABC transpo 49.9 12 0.00026 35.4 2.3 20 280-301 63-82 (286)
304 PRK15093 antimicrobial peptide 49.8 12 0.00025 36.3 2.3 22 280-303 31-52 (330)
305 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 49.7 12 0.00027 33.7 2.3 37 279-318 45-85 (224)
306 TIGR00958 3a01208 Conjugate Tr 49.6 12 0.00025 40.1 2.4 41 276-319 501-545 (711)
307 PRK14248 phosphate ABC transpo 49.5 12 0.00026 34.6 2.3 38 280-320 45-91 (268)
308 COG1123 ATPase components of v 49.4 19 0.0004 38.4 3.8 38 278-318 313-354 (539)
309 PLN02840 tRNA dimethylallyltra 49.4 11 0.00025 38.7 2.2 22 283-304 20-41 (421)
310 PRK06290 aspartate aminotransf 49.4 76 0.0016 31.5 7.9 119 29-175 82-224 (410)
311 cd03275 ABC_SMC1_euk Eukaryoti 49.4 13 0.00027 34.3 2.3 15 286-300 24-38 (247)
312 PRK13646 cbiO cobalt transport 49.3 12 0.00026 35.3 2.2 37 280-319 31-71 (286)
313 cd03217 ABC_FeS_Assembly ABC-t 49.2 13 0.00028 32.9 2.3 38 280-320 24-67 (200)
314 PRK14268 phosphate ABC transpo 49.1 13 0.00027 34.3 2.3 24 278-303 34-57 (258)
315 PRK15079 oligopeptide ABC tran 49.1 10 0.00022 37.0 1.8 41 277-320 42-86 (331)
316 TIGR03420 DnaA_homol_Hda DnaA 49.1 13 0.00029 32.7 2.3 20 282-303 38-57 (226)
317 PRK13637 cbiO cobalt transport 49.0 12 0.00026 35.3 2.2 38 280-320 31-72 (287)
318 PRK14272 phosphate ABC transpo 48.8 13 0.00028 33.8 2.3 38 280-320 28-74 (252)
319 CHL00195 ycf46 Ycf46; Provisio 48.5 13 0.00028 38.7 2.5 32 269-304 248-279 (489)
320 PRK14270 phosphate ABC transpo 48.4 14 0.00029 33.8 2.4 40 278-320 26-74 (251)
321 PRK06348 aspartate aminotransf 48.1 1.1E+02 0.0025 29.5 8.7 45 31-75 69-118 (384)
322 PRK10261 glutathione transport 48.1 12 0.00027 39.3 2.3 41 277-320 345-389 (623)
323 PRK14271 phosphate ABC transpo 48.1 13 0.00029 34.8 2.3 22 280-303 45-66 (276)
324 PRK10938 putative molybdenum t 48.1 12 0.00027 37.6 2.2 22 279-302 283-304 (490)
325 PRK13635 cbiO cobalt transport 48.0 13 0.00028 34.9 2.2 38 280-320 31-72 (279)
326 TIGR03499 FlhF flagellar biosy 47.9 13 0.00028 35.4 2.2 36 282-319 194-234 (282)
327 PRK10851 sulfate/thiosulfate t 47.9 13 0.00028 36.7 2.3 38 280-320 26-67 (353)
328 cd03240 ABC_Rad50 The catalyti 47.7 7.8 0.00017 34.9 0.7 18 286-303 24-41 (204)
329 cd03231 ABC_CcmA_heme_exporter 47.7 14 0.0003 32.7 2.3 39 278-319 22-64 (201)
330 PRK05942 aspartate aminotransf 47.7 62 0.0014 31.4 6.9 103 31-161 76-188 (394)
331 TIGR00635 ruvB Holliday juncti 47.7 11 0.00024 35.1 1.7 18 285-304 33-50 (305)
332 PRK09700 D-allose transporter 47.5 13 0.00028 37.8 2.2 39 278-319 27-69 (510)
333 PRK14269 phosphate ABC transpo 47.2 14 0.0003 33.6 2.3 38 280-320 26-70 (246)
334 TIGR03269 met_CoM_red_A2 methy 47.2 13 0.00029 37.7 2.3 24 277-302 21-44 (520)
335 PRK14258 phosphate ABC transpo 47.2 14 0.0003 34.1 2.3 37 280-319 31-76 (261)
336 PRK11160 cysteine/glutathione 47.1 14 0.0003 38.3 2.4 25 277-303 361-385 (574)
337 TIGR03740 galliderm_ABC gallid 47.1 14 0.00031 32.9 2.3 37 280-319 24-64 (223)
338 PRK04220 2-phosphoglycerate ki 46.9 11 0.00023 37.3 1.5 20 285-304 93-112 (301)
339 PRK14235 phosphate transporter 46.9 14 0.00031 34.2 2.3 22 280-303 43-64 (267)
340 PRK13631 cbiO cobalt transport 46.8 14 0.0003 35.9 2.2 34 280-316 50-87 (320)
341 cd03282 ABC_MSH4_euk MutS4 hom 46.5 15 0.00034 33.4 2.4 22 277-300 24-45 (204)
342 PRK14263 phosphate ABC transpo 46.4 14 0.00031 34.2 2.2 41 278-320 30-78 (261)
343 PRK13869 plasmid-partitioning 46.4 5.9 0.00013 39.8 -0.4 35 270-315 119-156 (405)
344 PRK13643 cbiO cobalt transport 46.1 14 0.0003 34.9 2.1 38 279-319 29-70 (288)
345 PLN02748 tRNA dimethylallyltra 46.1 13 0.00027 38.8 2.0 35 280-318 20-54 (468)
346 TIGR01846 type_I_sec_HlyB type 46.0 14 0.0003 39.1 2.3 26 277-304 478-503 (694)
347 PLN02772 guanylate kinase 46.0 15 0.00032 37.7 2.4 17 285-301 136-152 (398)
348 PRK13639 cbiO cobalt transport 45.4 15 0.00033 34.3 2.2 37 280-319 26-66 (275)
349 TIGR01241 FtsH_fam ATP-depende 45.3 14 0.0003 37.8 2.1 26 275-304 83-108 (495)
350 TIGR03269 met_CoM_red_A2 methy 45.3 15 0.00032 37.5 2.3 35 277-314 305-343 (520)
351 PRK14255 phosphate ABC transpo 45.2 16 0.00036 33.2 2.4 23 280-304 29-51 (252)
352 PRK00149 dnaA chromosomal repl 45.0 22 0.00048 35.8 3.4 31 283-315 149-184 (450)
353 TIGR03522 GldA_ABC_ATP gliding 44.9 15 0.00032 34.9 2.1 38 280-320 26-67 (301)
354 PRK14257 phosphate ABC transpo 44.9 16 0.00034 35.7 2.3 40 278-320 104-152 (329)
355 PRK03317 histidinol-phosphate 44.8 92 0.002 29.8 7.5 42 31-72 68-114 (368)
356 PRK09700 D-allose transporter 44.8 15 0.00032 37.3 2.2 40 277-319 284-327 (510)
357 cd03300 ABC_PotA_N PotA is an 44.4 18 0.00038 32.7 2.4 38 280-320 24-65 (232)
358 smart00763 AAA_PrkA PrkA AAA d 44.2 16 0.00035 36.9 2.3 19 282-302 78-96 (361)
359 cd03297 ABC_ModC_molybdenum_tr 44.1 15 0.00033 32.6 1.9 33 286-319 25-61 (214)
360 PRK14260 phosphate ABC transpo 44.1 17 0.00036 33.5 2.2 24 277-302 28-51 (259)
361 PRK14088 dnaA chromosomal repl 44.1 20 0.00043 36.5 3.0 29 285-315 133-166 (440)
362 COG4175 ProV ABC-type proline/ 43.9 25 0.00054 35.9 3.6 56 263-321 30-94 (386)
363 PRK13546 teichoic acids export 43.8 15 0.00032 34.6 1.9 33 276-310 44-80 (264)
364 PRK13651 cobalt transporter AT 43.7 16 0.00035 35.1 2.1 21 280-302 31-51 (305)
365 COG0468 RecA RecA/RadA recombi 43.6 14 0.0003 36.0 1.8 22 280-303 58-79 (279)
366 PF06068 TIP49: TIP49 C-termin 43.6 13 0.00029 38.1 1.7 45 246-303 25-69 (398)
367 PRK13652 cbiO cobalt transport 43.6 17 0.00037 34.0 2.2 23 277-301 25-47 (277)
368 PRK14252 phosphate ABC transpo 43.2 18 0.00039 33.4 2.3 21 280-302 40-60 (265)
369 cd04438 DEP_dishevelled DEP (D 43.1 66 0.0014 25.9 5.3 49 29-86 31-83 (84)
370 PRK07681 aspartate aminotransf 43.1 1.5E+02 0.0033 28.8 8.8 46 30-75 71-122 (399)
371 cd00879 Sar1 Sar1 subfamily. 42.9 16 0.00035 31.1 1.9 25 275-302 13-37 (190)
372 cd01130 VirB11-like_ATPase Typ 42.8 31 0.00068 30.3 3.7 35 279-317 22-60 (186)
373 cd03291 ABCC_CFTR1 The CFTR su 42.8 18 0.00039 34.5 2.3 29 279-309 60-92 (282)
374 PLN03232 ABC transporter C fam 42.7 14 0.0003 43.1 1.9 25 277-303 638-662 (1495)
375 cd03279 ABC_sbcCD SbcCD and ot 42.7 17 0.00038 32.5 2.1 20 282-303 28-47 (213)
376 PRK12726 flagellar biosynthesi 42.6 15 0.00033 37.8 1.9 35 282-318 206-243 (407)
377 TIGR01288 nodI ATP-binding ABC 42.6 18 0.00039 34.4 2.3 39 278-319 26-68 (303)
378 PRK15439 autoinducer 2 ABC tra 42.3 17 0.00037 37.1 2.2 37 280-319 35-75 (510)
379 PF13476 AAA_23: AAA domain; P 42.2 14 0.0003 31.2 1.3 16 284-301 21-36 (202)
380 PRK10982 galactose/methyl gala 42.2 17 0.00037 36.7 2.2 40 277-319 19-62 (491)
381 COG3925 N-terminal domain of t 42.0 14 0.00031 31.3 1.3 40 234-273 43-83 (103)
382 PTZ00433 tyrosine aminotransfe 41.9 1.4E+02 0.0031 29.2 8.4 44 30-73 77-131 (412)
383 PF02463 SMC_N: RecF/RecN/SMC 41.8 18 0.00038 32.1 2.0 18 281-300 23-40 (220)
384 PLN03025 replication factor C 41.8 17 0.00036 34.8 2.0 17 285-303 37-53 (319)
385 TIGR02314 ABC_MetN D-methionin 41.7 18 0.00039 35.7 2.2 40 278-320 27-70 (343)
386 COG4988 CydD ABC-type transpor 41.7 19 0.0004 38.6 2.4 24 277-302 342-365 (559)
387 PRK14264 phosphate ABC transpo 41.7 19 0.00041 34.4 2.3 38 280-320 69-115 (305)
388 PRK10261 glutathione transport 41.6 15 0.00033 38.6 1.8 25 278-304 38-62 (623)
389 COG0079 HisC Histidinol-phosph 41.6 88 0.0019 31.1 7.0 41 30-70 59-99 (356)
390 PRK13634 cbiO cobalt transport 41.6 18 0.0004 34.1 2.2 37 280-319 31-71 (290)
391 TIGR02640 gas_vesic_GvpN gas v 41.5 12 0.00027 34.9 1.0 32 282-315 21-52 (262)
392 TIGR02880 cbbX_cfxQ probable R 41.4 11 0.00023 36.0 0.6 15 287-301 61-75 (284)
393 COG2256 MGS1 ATPase related to 41.4 9.5 0.00021 39.6 0.2 23 291-313 55-77 (436)
394 PRK00080 ruvB Holliday junctio 41.4 11 0.00023 36.2 0.5 29 284-314 53-81 (328)
395 PRK08727 hypothetical protein; 41.2 20 0.00043 33.0 2.3 31 283-315 42-75 (233)
396 TIGR02633 xylG D-xylose ABC tr 41.2 18 0.00039 36.6 2.1 39 278-319 23-67 (500)
397 PF00154 RecA: recA bacterial 41.2 16 0.00036 36.2 1.8 21 280-302 51-71 (322)
398 PRK13636 cbiO cobalt transport 41.2 19 0.00042 33.8 2.2 39 278-319 28-70 (283)
399 TIGR03719 ABC_ABC_ChvD ATP-bin 41.1 19 0.0004 37.2 2.3 21 280-302 346-366 (552)
400 TIGR01243 CDC48 AAA family ATP 40.7 15 0.00033 39.4 1.6 26 276-305 483-508 (733)
401 PRK10938 putative molybdenum t 40.6 20 0.00042 36.2 2.3 40 277-319 24-67 (490)
402 PRK06526 transposase; Provisio 40.6 18 0.00038 34.3 1.9 32 282-315 98-132 (254)
403 PRK15134 microcin C ABC transp 40.6 18 0.00039 36.9 2.1 19 280-300 33-51 (529)
404 PRK05428 HPr kinase/phosphoryl 40.2 10 0.00022 37.6 0.2 77 229-320 101-179 (308)
405 PF08477 Miro: Miro-like prote 40.1 19 0.0004 28.2 1.7 15 285-301 2-16 (119)
406 TIGR03719 ABC_ABC_ChvD ATP-bin 39.7 21 0.00045 36.9 2.4 24 277-302 26-49 (552)
407 TIGR03689 pup_AAA proteasome A 39.6 17 0.00036 38.3 1.7 24 275-302 211-234 (512)
408 TIGR01243 CDC48 AAA family ATP 39.6 18 0.00038 39.0 1.9 25 275-303 207-231 (733)
409 PRK11288 araG L-arabinose tran 39.6 19 0.00042 36.5 2.1 37 280-319 28-68 (501)
410 cd03213 ABCG_EPDR ABCG transpo 39.5 23 0.00049 31.3 2.3 20 280-301 33-52 (194)
411 PF10237 N6-adenineMlase: Prob 39.5 59 0.0013 29.2 5.0 62 25-88 93-160 (162)
412 TIGR00064 ftsY signal recognit 39.4 26 0.00055 33.5 2.8 35 283-319 73-110 (272)
413 TIGR01420 pilT_fam pilus retra 39.1 26 0.00056 34.3 2.8 34 287-320 125-162 (343)
414 PRK11147 ABC transporter ATPas 39.0 21 0.00045 37.7 2.3 21 280-302 27-47 (635)
415 PRK15134 microcin C ABC transp 39.0 21 0.00046 36.5 2.3 39 277-319 307-349 (529)
416 PRK08181 transposase; Validate 38.7 20 0.00043 34.4 1.9 33 282-316 106-141 (269)
417 COG0444 DppD ABC-type dipeptid 38.6 18 0.00039 36.1 1.6 37 281-320 30-75 (316)
418 PRK13642 cbiO cobalt transport 38.6 22 0.00048 33.2 2.2 37 280-319 31-71 (277)
419 PRK09257 aromatic amino acid a 38.5 1.9E+02 0.004 28.1 8.6 121 30-174 71-216 (396)
420 PRK14721 flhF flagellar biosyn 38.5 26 0.00056 36.0 2.8 19 281-301 190-208 (420)
421 PRK12727 flagellar biosynthesi 38.5 19 0.00042 38.5 2.0 50 268-319 335-390 (559)
422 PRK06959 putative threonine-ph 38.3 1.5E+02 0.0033 28.4 7.9 40 31-71 56-95 (339)
423 PRK12402 replication factor C 38.3 13 0.00028 34.8 0.6 16 285-302 39-54 (337)
424 PF00931 NB-ARC: NB-ARC domain 38.2 20 0.00043 32.6 1.8 22 282-303 17-38 (287)
425 PRK13644 cbiO cobalt transport 38.1 23 0.0005 33.1 2.2 37 280-319 26-66 (274)
426 PLN02368 alanine transaminase 38.0 1.5E+02 0.0033 29.7 8.1 109 31-162 110-229 (407)
427 PRK10982 galactose/methyl gala 37.9 21 0.00045 36.1 2.0 41 277-320 269-313 (491)
428 PRK14722 flhF flagellar biosyn 37.6 23 0.00049 35.9 2.2 38 280-319 135-177 (374)
429 cd03288 ABCC_SUR2 The SUR doma 37.5 21 0.00046 32.8 1.9 37 280-319 45-85 (257)
430 PRK08637 hypothetical protein; 37.3 2.1E+02 0.0045 27.8 8.7 109 30-161 46-164 (388)
431 TIGR03415 ABC_choXWV_ATP choli 37.2 22 0.00049 35.7 2.1 34 280-316 48-85 (382)
432 PLN00410 U5 snRNP protein, DIM 37.2 21 0.00046 31.5 1.7 30 124-153 107-136 (142)
433 PRK11819 putative ABC transpor 37.2 25 0.00054 36.4 2.5 24 277-302 28-51 (556)
434 PRK08636 aspartate aminotransf 37.1 2E+02 0.0042 28.1 8.5 113 30-162 73-194 (403)
435 PLN00164 glucosyltransferase; 37.1 72 0.0016 32.9 5.7 106 30-152 259-386 (480)
436 PTZ00265 multidrug resistance 37.0 20 0.00042 42.1 1.9 32 277-310 406-441 (1466)
437 TIGR00763 lon ATP-dependent pr 36.7 26 0.00055 38.2 2.6 20 286-305 349-368 (775)
438 PF13245 AAA_19: Part of AAA d 36.7 14 0.0003 28.7 0.5 13 290-302 16-28 (76)
439 COG2274 SunT ABC-type bacterio 36.7 24 0.00052 38.5 2.4 24 277-302 494-517 (709)
440 PLN02187 rooty/superroot1 36.6 1.6E+02 0.0034 30.0 8.0 46 30-75 110-160 (462)
441 COG1122 CbiO ABC-type cobalt t 36.5 26 0.00056 33.0 2.3 25 277-303 25-49 (235)
442 KOG0952|consensus 36.4 14 0.00031 42.3 0.7 14 291-304 133-146 (1230)
443 TIGR02928 orc1/cdc6 family rep 36.4 24 0.00052 33.6 2.1 20 281-302 39-58 (365)
444 PRK15064 ABC transporter ATP-b 36.3 25 0.00055 35.9 2.4 23 278-302 23-45 (530)
445 PRK09302 circadian clock prote 36.3 23 0.00049 36.3 2.0 21 280-302 271-291 (509)
446 TIGR02639 ClpA ATP-dependent C 36.1 24 0.00053 38.1 2.3 37 32-68 164-200 (731)
447 PRK13549 xylose transporter AT 36.0 24 0.00051 35.9 2.1 22 278-301 284-305 (506)
448 PRK10762 D-ribose transporter 35.9 24 0.00053 35.8 2.2 37 280-319 28-68 (501)
449 PF13173 AAA_14: AAA domain 35.9 28 0.0006 28.6 2.1 18 283-302 3-20 (128)
450 PF04851 ResIII: Type III rest 35.6 27 0.00057 28.9 2.0 20 281-302 24-43 (184)
451 PRK15064 ABC transporter ATP-b 35.6 26 0.00057 35.8 2.4 24 277-302 340-363 (530)
452 PRK04195 replication factor C 35.6 32 0.0007 35.1 3.0 20 283-304 40-59 (482)
453 TIGR03015 pepcterm_ATPase puta 35.5 23 0.0005 32.1 1.7 13 290-302 49-61 (269)
454 PRK12724 flagellar biosynthesi 35.4 25 0.00055 36.4 2.2 35 285-319 224-262 (432)
455 cd03243 ABC_MutS_homologs The 35.4 27 0.00058 31.0 2.1 17 282-300 29-45 (202)
456 TIGR03537 DapC succinyldiamino 35.3 2.9E+02 0.0063 26.2 9.2 107 30-161 38-154 (350)
457 PRK13549 xylose transporter AT 35.2 24 0.00052 35.8 2.0 20 280-301 29-48 (506)
458 cd03274 ABC_SMC4_euk Eukaryoti 35.2 24 0.00051 32.1 1.8 15 286-300 27-41 (212)
459 TIGR00954 3a01203 Peroxysomal 35.2 26 0.00056 37.3 2.3 25 277-303 473-497 (659)
460 PRK12723 flagellar biosynthesi 35.1 33 0.00071 34.8 2.9 36 284-319 174-216 (388)
461 PRK13633 cobalt transporter AT 34.9 29 0.00063 32.5 2.4 38 280-320 34-75 (280)
462 PRK11819 putative ABC transpor 34.9 27 0.00058 36.2 2.3 21 280-302 348-368 (556)
463 TIGR00679 hpr-ser Hpr(Ser) kin 34.8 18 0.00038 35.9 0.9 33 282-320 146-179 (304)
464 CHL00181 cbbX CbbX; Provisiona 34.6 27 0.00058 33.5 2.1 29 275-304 51-79 (287)
465 PLN03130 ABC transporter C fam 34.6 23 0.0005 41.9 2.0 26 276-303 637-662 (1622)
466 PLN02994 1-aminocyclopropane-1 34.3 39 0.00085 29.8 2.9 49 27-75 95-146 (153)
467 PF00308 Bac_DnaA: Bacterial d 34.3 45 0.00098 30.5 3.5 31 283-315 35-70 (219)
468 KOG0726|consensus 33.9 24 0.00052 36.0 1.7 24 275-302 214-237 (440)
469 CHL00081 chlI Mg-protoporyphyr 33.6 36 0.00078 34.2 2.9 42 256-302 15-56 (350)
470 PRK12414 putative aminotransfe 33.5 1.4E+02 0.003 29.0 6.8 91 45-161 88-180 (384)
471 PRK13537 nodulation ABC transp 33.2 31 0.00067 33.1 2.3 40 278-320 29-72 (306)
472 PRK05642 DNA replication initi 33.2 25 0.00055 32.3 1.6 19 283-303 46-64 (234)
473 PRK10787 DNA-binding ATP-depen 33.1 37 0.0008 37.4 3.1 25 278-304 345-369 (784)
474 cd01122 GP4d_helicase GP4d_hel 33.0 30 0.00064 31.7 2.1 34 281-316 29-66 (271)
475 PF09419 PGP_phosphatase: Mito 33.0 1E+02 0.0023 27.9 5.5 30 26-55 57-86 (168)
476 PHA02519 plasmid partition pro 33.0 13 0.00029 37.2 -0.2 38 270-318 104-145 (387)
477 PRK13641 cbiO cobalt transport 32.9 30 0.00066 32.6 2.2 40 277-319 28-71 (287)
478 COG4181 Predicted ABC-type tra 32.9 34 0.00075 32.5 2.4 39 281-321 35-76 (228)
479 TIGR01650 PD_CobS cobaltochela 32.8 16 0.00035 36.4 0.3 21 282-304 64-84 (327)
480 PLN02656 tyrosine transaminase 32.7 2.9E+02 0.0063 27.1 9.0 46 30-75 75-125 (409)
481 PRK15439 autoinducer 2 ABC tra 32.6 30 0.00064 35.4 2.2 40 277-319 284-327 (510)
482 PRK08361 aspartate aminotransf 32.6 2.9E+02 0.0063 26.7 8.9 107 30-161 72-184 (391)
483 PLN03210 Resistant to P. syrin 32.6 35 0.00077 38.7 2.9 25 277-303 202-226 (1153)
484 PRK06921 hypothetical protein; 32.5 31 0.00068 32.7 2.2 34 281-316 116-153 (266)
485 COG4133 CcmA ABC-type transpor 32.0 35 0.00075 32.4 2.3 19 281-301 27-45 (209)
486 PRK13705 plasmid-partitioning 31.8 13 0.00029 37.1 -0.4 38 270-318 104-145 (388)
487 PRK09147 succinyldiaminopimela 31.7 3.2E+02 0.007 26.5 9.0 39 31-69 68-113 (396)
488 COG1118 CysA ABC-type sulfate/ 31.6 36 0.00077 34.5 2.5 23 277-301 23-45 (345)
489 CHL00095 clpC Clp protease ATP 31.6 34 0.00073 37.6 2.5 27 275-302 530-557 (821)
490 PLN02410 UDP-glucoronosyl/UDP- 31.6 1.4E+02 0.003 30.7 6.8 98 33-152 254-371 (451)
491 PRK00635 excinuclease ABC subu 31.6 31 0.00066 41.7 2.3 25 276-302 20-44 (1809)
492 COG4615 PvdE ABC-type sideroph 31.5 26 0.00057 36.9 1.6 24 279-304 346-369 (546)
493 PRK08939 primosomal protein Dn 31.5 34 0.00074 33.3 2.3 35 279-315 153-190 (306)
494 PRK14087 dnaA chromosomal repl 31.5 43 0.00094 34.3 3.1 31 284-316 143-178 (450)
495 PTZ00202 tuzin; Provisional 31.3 36 0.00078 36.3 2.5 16 285-300 287-302 (550)
496 PF01255 Prenyltransf: Putativ 31.3 1.1E+02 0.0024 28.5 5.5 52 23-74 89-148 (223)
497 PRK06995 flhF flagellar biosyn 31.3 32 0.00068 36.1 2.1 37 281-319 255-296 (484)
498 PRK14489 putative bifunctional 31.2 25 0.00054 34.8 1.3 35 282-316 203-240 (366)
499 PF02562 PhoH: PhoH-like prote 31.1 25 0.00054 32.7 1.2 17 286-302 21-37 (205)
500 PRK11288 araG L-arabinose tran 31.0 33 0.00071 34.8 2.2 39 278-319 275-317 (501)
No 1
>KOG3749|consensus
Probab=100.00 E-value=6.3e-144 Score=1067.19 Aligned_cols=309 Identities=65% Similarity=1.162 Sum_probs=305.1
Q ss_pred hhhccccceeeeccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcc
Q psy13078 12 FNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADV 91 (325)
Q Consensus 12 ~~~~~~~~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~Dv 91 (325)
++++++++||++|||.+|+++|++||+|+|+||||+.|||||||++|++.|++.|+++|.+.+|.+|+||||+|+||+||
T Consensus 23 ~~~~~~~vpv~kGd~~~L~~~V~~Fv~~~~eL~qP~~i~ICdGSe~E~~~l~~~l~e~g~~~~l~~ydn~~L~rtdp~DV 102 (640)
T KOG3749|consen 23 IVPNIGQVPVLKGDLDSLPPAVRTFVEECAELCQPDGIHICDGSEFENQELLDALEEEGGLRPLPKYDNCWLARTDPRDV 102 (640)
T ss_pred eecccCcceeeecccccCCHHHHHHHHHHHHhcCcceeEecCCcHHHHHHHHHHHHHhcCcccchhhhcceeecCChhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCch
Q psy13078 92 ARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSP 171 (325)
Q Consensus 92 ARve~rTfI~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~ 171 (325)
||||++|||+|++++|+.|++.+|++++|+|||++++|..++++||||||+|||||||||||||+|||+||+||||||||
T Consensus 103 arVeskT~i~t~~~~dtv~~~~eGv~~~lg~wms~~df~~~~~~rFpgcM~GRtMYVvPFSMGpvGsplskiGiqlTDsp 182 (640)
T KOG3749|consen 103 ARVESKTVIVTSSKRDTVPGPPEGVEGQLGHWMSEEDFDFAVDERFPGCMKGRTMYVVPFSMGPVGSPLSKIGIQLTDSP 182 (640)
T ss_pred heeccceEEeccccccccCCCcccccccccccCCHHHHHHHHhhcCCccccCceEEEEeeccCCCCCcchhceeEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhccccCHHHHHhcCCCCCceeeeeccCCCCCCCCC-CCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhh
Q psy13078 172 YVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHE-FPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGK 250 (325)
Q Consensus 172 YVv~sm~imtR~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~-~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgK 250 (325)
|||+|||||||||.+|||+|+++ +|||||||||.|++..++ +++|||||++++|+|.|++|||||||||||||+||||
T Consensus 183 yvV~smRimtR~g~~Vl~~l~~~-dFvrClHSVG~Prp~~~~~v~~wpcnPe~t~i~hkp~e~EI~s~GsgyGgnsllGk 261 (640)
T KOG3749|consen 183 YVVLSMRIMTRMGTPVLDALGDG-DFVRCLHSVGMPRPGQQKIVNPWPCNPERTLIAHKPDEREIWSFGSGYGGNSLLGK 261 (640)
T ss_pred eeeeehhHHHHhccHHHHHhccc-chhhhhhhcCCCCCcccCCCCCCCCCcceeEEeecCccceeeeeccCCCCCccccc
Confidence 99999999999999999999998 699999999999999998 6779999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 251 KCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 251 KcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
|||||||||++|++||||||||||||||||+|+|+||+|||||||||||||||.|++|||||||||||||=
T Consensus 262 KcFalriaS~iak~eGWLAEhmlIlgITnP~g~k~~iaaafpSacgktnLam~~p~lPGwKV~cVgddiaW 332 (640)
T KOG3749|consen 262 KCFALRIASRLAKDEGWLAEHMLILGITNPKGEKKYIAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAW 332 (640)
T ss_pred hhhhhhhhhhhhhhhhhHHHhHHHhcccCCCCCceEEEEecccccccchHhhcCCCCCCceEEEeccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999983
No 2
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=100.00 E-value=3.3e-139 Score=1052.54 Aligned_cols=278 Identities=62% Similarity=1.090 Sum_probs=274.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCC
Q psy13078 33 LKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDT 112 (325)
Q Consensus 33 v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~ 112 (325)
|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||+.|||||||||||.||||||+||||||++++|++|+|
T Consensus 1 l~~~v~e~~~l~~Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~~~~~l~rs~p~DvARve~rTfI~s~~~~dagp~n 80 (579)
T cd00819 1 LLEWVEEAAELCQPDSVYICDGSEEEYDRLRDLMVEQGEEIRLNKYPNSYLARSDPSDVARVESRTFICSEDEEDAGPTN 80 (579)
T ss_pred CHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhcCcEeeCCCCCCCEEEeCCccccceeccceEEecCchhccCCcc
Confidence 57899999999999999999999999999999999999999999899999999999999999999999999999999997
Q ss_pred CCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhccccCHHHHHhcC
Q psy13078 113 KPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLD 192 (325)
Q Consensus 113 ~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imtR~g~~v~d~l~ 192 (325)
|||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||||||||||||++||+.|+
T Consensus 81 ---------nw~~p~e~~~~l~~lf~G~M~GRTMYVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g~~vl~~lg 151 (579)
T cd00819 81 ---------NWMDPEEMKAELKELFKGCMRGRTMYVIPFSMGPLGSPISKIGVELTDSPYVVHSMRIMTRMGKAVLDALG 151 (579)
T ss_pred ---------ccCCHHHHHHHHHhhCCcccCCCeEEEEeeecCCCCCCcccceEEEeCCHHHHHhHHHHHhcCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhh
Q psy13078 193 ADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272 (325)
Q Consensus 193 ~~~~Fvr~vHSvG~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHM 272 (325)
+ ++|||||||+|+|++.+|++ +|||||+++||+|||++|+|||||||||||||||||||||||||++||+||||||||
T Consensus 152 ~-~~Fv~~vHSvG~pl~~~~~~-~wpcn~~~~~I~h~pe~~~I~S~gSgYGGNaLlgKKcfaLRiAs~~ar~eGWLAEHM 229 (579)
T cd00819 152 E-GEFVPCLHSVGAPLSAGQKD-VWPCNPEKKYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVMARDEGWLAEHM 229 (579)
T ss_pred c-CCeeeeeccCCCcCCCCCCC-CCCCCCCccEEEEEcCCCeEEEecCCcCCCcccchhHHHHHHHHHHhHhcCcHHHhh
Confidence 8 79999999999999999987 899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 273 lIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
||||||||+|+++||||||||||||||||||.|++|||||+|||||||-
T Consensus 230 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~~gwkv~~vGDDIAw 278 (579)
T cd00819 230 LILGVTNPEGEKKYFAAAFPSACGKTNLAMLIPPLPGWKVETVGDDIAW 278 (579)
T ss_pred HHheeeCCCCCEEEEEEEcccccccccHhhcCCCCCCceeEEeccceee
Confidence 9999999999999999999999999999999999999999999999984
No 3
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents GTP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004611 phosphoenolpyruvate carboxykinase activity, 0005525 GTP binding, 0006094 gluconeogenesis; PDB: 2FAH_A 2FAF_A 2QZY_B 2ZCI_D 3MOE_A 3DT7_B 2RKD_A 2RKA_A 2RK8_A 2QF2_B ....
Probab=100.00 E-value=9.9e-140 Score=1059.39 Aligned_cols=278 Identities=62% Similarity=1.102 Sum_probs=238.9
Q ss_pred HHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCC
Q psy13078 35 SFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICTQEKAETVPDT 112 (325)
Q Consensus 35 ~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~ 112 (325)
+||+|+|+|||||+|||||||+||+++|+++|+++|+++|| .+|||||||||||.||||||+||||||++++|++|+|
T Consensus 1 ~fV~e~a~l~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~~~~~~n~~l~~sdp~DvARve~~TfI~t~~~~d~~p~~ 80 (586)
T PF00821_consen 1 EFVAEVAELCQPDSIYICDGSEEENDRLRDELVEQGEEIPLNPPKHPNCYLHRSDPSDVARVESRTFICTEDKEDAGPTN 80 (586)
T ss_dssp HHHHHHHHHH-BSEEEE----HHHHHHHHHHHHHTTSEEEE-TTTSBSEEEE---TTSSS--GGGEEEE-SSHHHHSTTS
T ss_pred CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCEEeCCCCCCCCcEEEecCccccceecCceEEEcCCccccCCcc
Confidence 69999999999999999999999999999999999999999 6899999999999999999999999999999999997
Q ss_pred CCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhccccCHHHHHhcC
Q psy13078 113 KPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLD 192 (325)
Q Consensus 113 ~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imtR~g~~v~d~l~ 192 (325)
|||+|++|+++|+++|+|||+|||||||||||||+|||+|++|||||||||||||||||||||++|||+|+
T Consensus 81 ---------nw~~~~~~~~~l~~~f~G~M~GRtMyVipfsmGP~gsp~s~~gVqlTDS~YVv~sm~imtR~g~~v~~~l~ 151 (586)
T PF00821_consen 81 ---------NWMDPEEMKAELDELFPGCMKGRTMYVIPFSMGPIGSPFSKIGVQLTDSPYVVHSMRIMTRMGYAVLDRLG 151 (586)
T ss_dssp ---------SEE-HHHHHHHHHCCSTTTTTTSEEEEEEEEESSTTSTT-EEEEEEES-HHHHHHHHHHSEESHHHHHHHT
T ss_pred ---------CCCCHHHHHHHHHHhchhhhhhchHHhhHhhhCCCCCCCccceEEccCcHHHHHhHHHHHhcCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhh
Q psy13078 193 ADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272 (325)
Q Consensus 193 ~~~~Fvr~vHSvG~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHM 272 (325)
++++|||||||||+||+.++++++|||||+++||+|||++|+|||||||||||||||||||||||||++||+||||||||
T Consensus 152 ~~~~Fv~~vHSvG~pl~~~~~~~~wpcn~~~~~I~h~p~~~~I~S~gsgYGGNaLlgKKc~aLRiAs~~ar~eGWLAEHM 231 (586)
T PF00821_consen 152 DDGEFVRCVHSVGAPLPPGQKDVNWPCNPDKRYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVIARDEGWLAEHM 231 (586)
T ss_dssp TT--SEEEEEE-S--SSTSS--BTB---GGG-EEEEECCCTEEEEES--SHHHHSTCCCCCCCHHHHHHHHHHT-EEESE
T ss_pred CCCceEeeecccCCcCCCCCCCCCCCCCccceEEEEECCCCeEEEeCCCcCcchhhhhhhhhHHHHHHHHHhhhHHhhhh
Confidence 98899999999999999999987899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 273 lIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
||||||||+||++||||||||||||||||||+||+|||||||||||||-
T Consensus 232 lIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAW 280 (586)
T PF00821_consen 232 LILGITNPEGRKTYIAAAFPSACGKTNLAMLQPTLPGWKVETVGDDIAW 280 (586)
T ss_dssp EEEEEE-TTS-EEEEEEE-TTTSSHHHHHT---SSTT-EEEEEESS-EE
T ss_pred heeeEecCCCCEEEEEEecCcccccccHHhcCCCCCCcEEEEeeccchh
Confidence 9999999999999999999999999999999999999999999999993
No 4
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=2e-138 Score=1049.08 Aligned_cols=284 Identities=57% Similarity=1.003 Sum_probs=278.8
Q ss_pred ccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEEEcCCC
Q psy13078 28 AISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFICTQEK 105 (325)
Q Consensus 28 ~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~t~~~ 105 (325)
..|++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||+ ++||||||||||+||||||+||||||+++
T Consensus 8 ~~n~~l~~wv~e~~~l~~Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~k~~~~~~~rsdp~DvARve~rTfI~s~~~ 87 (601)
T PRK04210 8 TKNPKLLEWVAEVAELTQPDRVVWCDGSEEEYDRLRDQAVEAGTEIKLNPEKRPNSFLARSDPSDVARVEDRTFICSEKE 87 (601)
T ss_pred cCCHHHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHHHHHHHcCCEeeccCCCCCceeeccCChhhhhhcccceEEecCch
Confidence 4579999999999999999999999999999999999999999999995 89999999999999999999999999999
Q ss_pred CCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhccccCH
Q psy13078 106 AETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGT 185 (325)
Q Consensus 106 ~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imtR~g~ 185 (325)
+|++|+| |||+|++|+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||||||||||||+
T Consensus 88 ~dagp~n---------nw~~p~e~~~~l~~lf~G~M~GRTMyVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g~ 158 (601)
T PRK04210 88 EDAGPTN---------NWMDPAEMRETLKGLFKGCMRGRTMYVVPFSMGPLGSPFAKIGVEITDSPYVVHSMRIMTRMGK 158 (601)
T ss_pred hhcCCcc---------CcCCHHHHHHHHHHhcCCccCCCeEEEeeeeeCCCCCCcccceEEeeCCHHHHHhHHHHHhccH
Confidence 9999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceeeeeccCCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhc
Q psy13078 186 PVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKRE 265 (325)
Q Consensus 186 ~v~d~l~~~~~Fvr~vHSvG~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~E 265 (325)
+||+.|+++++|||||||+|+|++.+|++++||||++ |||+|+|++|+|||||||||||||||||||||||||++||+|
T Consensus 159 ~~l~~l~~~~~Fv~~vHSvG~p~~~~~~~v~wpcn~~-r~i~h~pe~~~I~S~gSgYgGNaLLGkKc~ALRiAs~~ar~e 237 (601)
T PRK04210 159 AVLDVLGEDGEFVPCVHSVGAPLEPGQKDVPWPCNDT-KYIVHFPETREIWSYGSGYGGNALLGKKCFALRIASVMARDE 237 (601)
T ss_pred HHHHhhCCCCceeeeeccCCCCCCCCCCCCCCCCCCC-eEEEEeCCCcEEEEecCCCCCCccchhHHHHHHHHHHHhHhc
Confidence 9999999888999999999999999999899999975 799999999999999999999999999999999999999999
Q ss_pred chhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 266 GWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 266 GWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
|||||||||||||||+|+++||||||||||||||||||.|++|||||+|||||||-
T Consensus 238 GWLAEHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~~gwkv~~VGDDIAw 293 (601)
T PRK04210 238 GWLAEHMLILGVTSPEGRKTYFAAAFPSACGKTNLAMLIPPIPGWKVETVGDDIAW 293 (601)
T ss_pred ccHHHhhHHheeeCCCCCEEEEEEecccccccccHhhcCCCCCCceeEEeecceee
Confidence 99999999999999999999999999999999999999999999999999999984
No 5
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=100.00 E-value=3.7e-133 Score=993.88 Aligned_cols=291 Identities=53% Similarity=0.929 Sum_probs=283.2
Q ss_pred eeeeccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccc
Q psy13078 20 SLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESK 97 (325)
Q Consensus 20 ~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~r 97 (325)
+-+..+-...|+.+++||+|+++||+|++||+||||+||+|+|+++|++.|++++|+ ++||||||||||.||||+|+|
T Consensus 7 ~~l~~~~~i~n~~l~~wi~ev~~l~~P~~V~~cdGS~eE~~~l~~~~v~aG~~i~Ln~~~~pn~~l~~s~psDvAR~e~r 86 (608)
T COG1274 7 DGLDKLAPINNQGLKSWIEEVAELTEPDDVVVCDGSPEEYDYLCWKMVEAGEEIKLNPEKHPNSYLARSNPSDVARVEER 86 (608)
T ss_pred cccccccccccHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHHHHhcCceeecCcccCCCceEeecChhhhhhhhhc
Confidence 334445568899999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred eEEEcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhh
Q psy13078 98 TFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSM 177 (325)
Q Consensus 98 TfI~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm 177 (325)
||||+++++|++|+| |||+|+||+++++++|+|||||||||||||||||+|||++++|||||||+||||||
T Consensus 87 TfI~s~~~~~agPtn---------Nw~~p~e~~~~m~~l~~G~MrGrtmyVvpf~mGP~~Spf~~~gVeiTDS~YVv~sm 157 (608)
T COG1274 87 TFICSPKEEDAGPTN---------NWMDPQEMRSEMNELFRGCMRGRTMYVVPFCMGPLNSPFTILGVELTDSPYVVHSM 157 (608)
T ss_pred eeeecccccccCCcc---------CCCCHHHHHHHHHHHHHhhhcCceEEEEeeeeCCCCCCcccceeEeecCceeeeeh
Confidence 999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCHHHHHhcCCCCCceeeeeccCCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHH
Q psy13078 178 RIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRI 257 (325)
Q Consensus 178 ~imtR~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRi 257 (325)
+||||||++||++||++++|||||||+|.||++++++.+||||+ .+||.||||+++||||||||||||||||||+||||
T Consensus 158 ~imtRmG~~vl~~lG~~g~Fvk~vHSvG~pL~pg~~dv~wPcn~-~k~i~hfped~~v~S~gsgYGGNall~KKC~ALRi 236 (608)
T COG1274 158 RIMTRMGKEVLEKLGDDGNFVKCVHSVGKPLDPGQKDVAWPCNE-TKYIRHFPEDREVWSFGSGYGGNALLGKKCLALRI 236 (608)
T ss_pred HHHHHHHHHHHHhcCCCCceeeeeeccCCCCCCCcccCcCCccc-ccceeecCCCcceEeecCCccchhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999988999995 57999999999999999999999999999999999
Q ss_pred HhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEeccccc
Q psy13078 258 GSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 258 aS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA 320 (325)
||++||+|||||||||||+|+||+||++||||||||||||||||||.|++||||++|||||||
T Consensus 237 as~~A~~EGWLAEHMlil~v~~PeGk~~yftaAFPSacGKTnlAMi~p~~pGWk~~~igDDIa 299 (608)
T COG1274 237 ASVMARDEGWLAEHMLILGVTNPEGKKYYFTAAFPSACGKTNLAMIPPTIPGWKAETIGDDIA 299 (608)
T ss_pred HHHHhhhhhhHhhhheeeEecCCCCceEEEEeecccccCccchhhcCCCCCCcceeeccCcee
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 6
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=100.00 E-value=4.7e-61 Score=484.10 Aligned_cols=246 Identities=44% Similarity=0.648 Sum_probs=229.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhc-CcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCccCCCccccC
Q psy13078 47 SDVHICDGSEREYKELIDLMVKD-KTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWIS 125 (325)
Q Consensus 47 ~~I~icdGS~eE~~~l~~~l~~~-G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~~~l~nwm~ 125 (325)
+.||+|+ |.++|.++++++ |+.+.+ +|++|+++++.|+||++++||||++++.|++|.-++|. +..|+|++
T Consensus 1 ~~v~~n~----~~~~L~e~~~~~~g~~~~~---~~g~l~~~tg~~tgRsp~dkfIv~~~~~~~~~~w~~~w-~~~N~~~~ 72 (515)
T cd01919 1 DHIHIND----ENGRLLQQMLEEYGILRLT---KNGALAVTDPRDTGRSPSDKVIVTQDQRRTVPIPKTGL-SQLNRWLS 72 (515)
T ss_pred CceEECC----CHHHHHHHHHHhcCCEEEC---CCceEEECCCCccccCCCceEEeCCCccccCccccccc-cccCCCCC
Confidence 4699999 788999999999 988887 79999999999999999999999999999999765665 66789999
Q ss_pred HHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhccccCH-HHHHhcCCCCCceeeeecc
Q psy13078 126 PQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGT-PVLNLLDADQPFVKALHSV 204 (325)
Q Consensus 126 ~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imtR~g~-~v~d~l~~~~~Fvr~vHSv 204 (325)
++++++.+.+.|+++|+||||||+||+||| ++++++.++|||||+||+|+|++|+|++. ++++.+++ .|++++||.
T Consensus 73 ~~~~~~~~~~~~~~~m~gr~myV~d~~~G~-~~~~~~~~r~it~~ay~~lf~~~m~~~p~~~~l~~~~~--p~~~ii~~~ 149 (515)
T cd01919 73 EEDFEKAFNARFPGLMKGRTLFVVDFFMGP-GSPLRLIVRELTDSPYVAAFMRIMTIMPTDEELAAFGD--PDVKCLNSV 149 (515)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeceECC-CCcccccEEEEEChHHHHHHHHHhccCCChHHHhhCCC--CCEEEEeCC
Confidence 999999999999999999999999999999 99999999999999999999999999999 78888765 699999999
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCce
Q psy13078 205 GTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQK 284 (325)
Q Consensus 205 G~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~ 284 (325)
|.|+++.+ |||++.+++|+|+|++|+||++||+||| ++|||+ ||++++++.++|||+|||.+++++++ +
T Consensus 150 g~~~~~~~----w~g~~s~~~I~~~~~~~~i~i~Gt~Y~G---e~KK~~-l~~~~~l~~~~g~L~~H~s~~~~~~g--~- 218 (515)
T cd01919 150 GCPLPLQK----WPGLPSLTLVAHNPDRREQIIFGTGYGG---EMKKGF-LRMMSRLAPEEGWLAMHMSANVGTNG--D- 218 (515)
T ss_pred CCcCCccC----CCCCCCCcEEEEEcccCEEEEecCcccc---chHHHH-HHHHHHHHHhcCceeeeceeeccCCC--C-
Confidence 99988543 9999988999999999999999999999 799997 99999999999999999999987654 3
Q ss_pred EEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 285 KYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
+++.++|||||||+|||. |++++|||||++
T Consensus 219 -~~~~~GlSGtGKTTLa~~------~~~~ligDD~~~ 248 (515)
T cd01919 219 -VLVFFGLSGTGKTTLSMD------PKRELIGDDEHW 248 (515)
T ss_pred -EEEEEecccCCCcccccC------CCcCeecccEEE
Confidence 899999999999999998 788999999986
No 7
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=98.02 E-value=0.00017 Score=74.88 Aligned_cols=234 Identities=21% Similarity=0.257 Sum_probs=148.5
Q ss_pred hcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCC-CcCCCCCCCccCCCc
Q psy13078 43 LCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKA-ETVPDTKPGVKGTLG 121 (325)
Q Consensus 43 L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~-da~p~~~~Gv~~~l~ 121 (325)
+.+...|++.- |. .+|++++++.++- .+.. -|...+.|... ..|.-..+||+-+... |.... +.-|
T Consensus 13 ~~~~~~i~~n~-~~---~~L~e~a~~~~~g-~~t~-~Gal~~~tG~~-tGRSp~dk~iV~~~~~~~~i~w------g~~n 79 (526)
T PRK09344 13 ITNLSNVHYNL-SY---AELYEEALRRGEG-VLTD-TGALAVDTGKF-TGRSPKDKFIVRDPSTEDTIWW------GDDN 79 (526)
T ss_pred CCCcceeEeCC-CH---HHHHHHHHHcCCC-eecc-CCceEEecCCc-cCCCcCceeeecCccccccccc------cccC
Confidence 34446777754 43 3578888887743 3322 36666655443 6788888999833322 21111 1224
Q ss_pred cccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCccee-eccCchhHHhhhhhcc-ccCHHHHHhcCCCCCcee
Q psy13078 122 NWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGV-EITDSPYVVGSMRIMT-RIGTPVLNLLDADQPFVK 199 (325)
Q Consensus 122 nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GV-qlTDS~YVv~sm~imt-R~g~~v~d~l~~~~~Fvr 199 (325)
+-++++.+..- .++.---+++|.+||++=-.|-- |--.+-| -+|+.+|-.+-|+-|. |-..+.++. ...+|+=
T Consensus 80 ~~~~~~~f~~l-~~~~~~~l~~~~lyv~d~~vG~d--~~~~~~vrvi~~~a~~~lf~~nlf~~p~~~e~~~--~~Pd~~i 154 (526)
T PRK09344 80 KPISPEKFDAL-KQKVLAYLSGKDLFVVDGFAGAD--PEYRLPVRVITELAWHALFVRNLFIRPSEEELAS--FEPDFTI 154 (526)
T ss_pred CCCCHHHHHHH-HHHHHHHhcCCcEEEEeeeecCC--hhHeeeEEEEecHHHHHHHHhhcCCCCChhHhcc--CCCCEEE
Confidence 56787777554 44456678899999999888863 3222222 4577777666555443 433333321 1113321
Q ss_pred eeeccCCCCCCCCCCCCCCCC-------CCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhh
Q psy13078 200 ALHSVGTPVSGKHEFPEWPCD-------PERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272 (325)
Q Consensus 200 ~vHSvG~pl~~~~~~~~Wpcn-------~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHM 272 (325)
- + ...|+++ ++ ++|+.+++.+.++=-|+.|+|-- ||. .|+++..+..+.|+|+-|-
T Consensus 155 i-~-----------~p~~~~~~~~~g~~s~-~~i~~~~~~~~~~I~Gt~Y~GE~---KK~-~lt~~~~~l~~rg~l~lH~ 217 (526)
T PRK09344 155 I-N-----------APKFKADPERDGTNSE-TFIAINFTERIVLIGGTDYAGEM---KKS-IFSVMNYLLPLKGVLPMHC 217 (526)
T ss_pred E-E-----------cCCCCCCccccCCCCC-ceEEEecccCeEEEEcchhHHHH---HHH-HHHHHHHHHHHCCcEeeeC
Confidence 1 1 2335444 43 68999999999999999999953 888 8999999999999999997
Q ss_pred hhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 273 lIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
-- .+. .+|+..=|. -.||.|||+|+.- +++ ..||||.-+
T Consensus 218 sa-~i~-~~g~~~~ff--GlSGtGKSTls~~----~~~--~li~DD~~~ 256 (526)
T PRK09344 218 SA-NVG-EEGDVALFF--GLSGTGKTTLSAD----PNR--KLIGDDEHG 256 (526)
T ss_pred ee-ecC-CCCcEEEEE--eecCCCeeecccc----CCc--ceeccceEE
Confidence 54 232 345443333 5899999998754 688 669999753
No 8
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....
Probab=98.01 E-value=0.00012 Score=74.75 Aligned_cols=224 Identities=21% Similarity=0.227 Sum_probs=139.2
Q ss_pred HHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCcc-CCCccccCHHHHHHHHHhcCc
Q psy13078 60 KELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVK-GTLGNWISPQDYEEAIMQRFP 138 (325)
Q Consensus 60 ~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~-~~l~nwm~~~~~~~~l~~~f~ 138 (325)
+.|.+++++.|+-.-- + -|..++.|. .=.+|.-.++||+-+.... .+ |- +..++-++++.+. .|.++..
T Consensus 11 ~~L~e~a~~~~eg~lt-~-~Gal~v~tG-~~TGRSp~dkfIV~~~~~~--~~----v~Wg~~n~~i~~e~f~-~L~~~v~ 80 (466)
T PF01293_consen 11 PELYEEAIKRGEGVLT-K-TGALVVNTG-KFTGRSPKDKFIVDEPGTE--DK----VWWGSVNQPISEEQFE-KLLERVV 80 (466)
T ss_dssp HHHHHHHCHTTTEEE--T-TSSEEE--T-T-SSB-GGGEEEE-STTTT--TT----S-BTTSBEEE-HHHHH-HHHHHHH
T ss_pred HHHHHHHHhcCCCEEc-c-CCCEEEeCC-CccCCCCCceEEecCCccc--cc----cccccCCcccCHHHHH-HHHHHHH
Confidence 4588888886654432 2 377777776 4589999999999544322 11 11 2445669999884 4555668
Q ss_pred cccCCCeEEEEecccCCCCCCCCcc-eeeccCchhHHhhhhh-ccccCHHHHHhcCCCCCceeeeeccCCCCCCCCCCCC
Q psy13078 139 GCMKGRTMYVIPFSMGPVGSPLSKI-GVEITDSPYVVGSMRI-MTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPE 216 (325)
Q Consensus 139 G~M~GRtMyViPfsmGPigsp~s~~-GVqlTDS~YVv~sm~i-mtR~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~~~~ 216 (325)
.-.++|.+||.==..|. +|-..+ -=-+|+.+|..+=++- +.|...+.++.... +|. -+|.-+-. .++
T Consensus 81 ~yL~~k~lyv~D~~vG~--d~~~~~~vRvit~~a~~aLF~~nL~~~p~~~e~~~f~p--d~t-I~~~p~f~------~~p 149 (466)
T PF01293_consen 81 DYLSTKELYVQDGYVGA--DPDYRIKVRVITERAWHALFARNLFIRPPPEELQNFEP--DFT-IINAPDFK------ADP 149 (466)
T ss_dssp HHHTTSEEEEEEEEESS--STTT-EEEEEEESSHHHHHHHHHHSB-GSHHHHHT-S---SEE-EEEETTS--------TT
T ss_pred HHhcccceEEEEEEEec--CHHHceeEEEEeCcHHHHHHHHHhhcCCChhHhcccCC--CEE-EEeCCccc------cCC
Confidence 88999999999888887 444344 3447899999887754 45666655554322 222 12211110 011
Q ss_pred C--CCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCc
Q psy13078 217 W--PCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSA 294 (325)
Q Consensus 217 W--pcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSa 294 (325)
| ..++ .++|..+++.+.+.=-|+.|.|.- ||. -|+++-.++.+.|-|+-|--.=-.+ +|+..=| ---||
T Consensus 150 ~~~g~~s-~~~i~~d~~~~~~vI~Gt~Y~GEi---KK~-ift~~n~ll~~~g~l~mH~san~~~--~gd~alf--FGLSG 220 (466)
T PF01293_consen 150 EIDGTNS-DTFIIFDFERNVAVILGTRYAGEI---KKG-IFTVMNYLLPRNGVLPMHCSANVGK--DGDTALF--FGLSG 220 (466)
T ss_dssp CHCT-SS-S-EEEEETTTTEEEEES---THHH---HHH-HHHHHHHHHHHTT-EEEEEEEEEET--TSSEEEE--EESTT
T ss_pred CcCCCCC-CcEEEEccccCeEEEECCcccccc---hHH-HHHHHHHhhHhcCeEEEEeeeeeCC--CCCeEEE--EecCC
Confidence 1 2334 479999999999999999999994 888 8999999999999999997644333 5665222 24899
Q ss_pred cChhhhcccCCCCCCceEEEecccc
Q psy13078 295 CGKTNLAMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 295 CGKTnlAMl~p~~pGwkv~~VGDDI 319 (325)
+|||+|.. .|.. +.+|||.
T Consensus 221 TGKTTLs~----d~~r--~ligDDe 239 (466)
T PF01293_consen 221 TGKTTLSA----DPER--ELIGDDE 239 (466)
T ss_dssp SSHHHHHS----BTTS--EEEESSE
T ss_pred CCcccccc----CCcc--eEEeCce
Confidence 99999876 2333 8999997
No 9
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=97.97 E-value=0.00039 Score=72.56 Aligned_cols=242 Identities=17% Similarity=0.138 Sum_probs=149.7
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCccCCCccc
Q psy13078 44 CQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNW 123 (325)
Q Consensus 44 ~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~~~l~nw 123 (325)
+++..||+.- |. .+|+++++++..+-.+.. -|...+.|... ..|.-...||+-++..+..-. -+..|.-
T Consensus 39 ~~~~~i~~Nl-~~---~~L~E~al~~~~~g~~t~-~GaL~v~TG~~-TGRSpkDKfIV~~~~~~d~i~-----Wg~vN~p 107 (561)
T PTZ00311 39 LHNTTIHRNL-TV---PELYEHALKYEKNTSITS-TGALCVYSGAK-TGRSPKDKRIVKEDSSEDDIW-----WGKVNIP 107 (561)
T ss_pred CCCCeEEeCC-CH---HHHHHHHHhhcCCcEEec-CCceEEecCCc-cCCCCCceEEeCCCCcccccc-----cCccCcc
Confidence 4667777765 43 347777773322333322 35555544443 678888888884433221100 1234678
Q ss_pred cCHHHHHHHHHhcCcccc-CCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhccc-cCHHHHHhcCCCCCceeee
Q psy13078 124 ISPQDYEEAIMQRFPGCM-KGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTR-IGTPVLNLLDADQPFVKAL 201 (325)
Q Consensus 124 m~~~~~~~~l~~~f~G~M-~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imtR-~g~~v~d~l~~~~~Fvr~v 201 (325)
++++++..-.++- ---+ ++|.+||+==-.|- ...+...-=-+|..+|-.+-|+=|.. --.+.+...++ .|.+-+
T Consensus 108 ~~~~~f~~L~~~~-~~yl~~~~~lyv~D~~vGa-Dp~~~l~vRvit~~a~~alF~~nmfirP~~~el~~~~~--~f~Pdf 183 (561)
T PTZ00311 108 LSEESFEINKKRA-IDYLNTRERLFVVDGYAGW-DPKYRLKVRVITTRAYHALFMRNMLIRPTNEELKKFGE--DFVPDF 183 (561)
T ss_pred CCHHHHHHHHHHH-HHHHhcCCCEEEEeeeeec-CcccceeEEEEecHHHHHHHHHHCCCCCChHHhhcccc--CCCCCE
Confidence 8999888754444 3444 68999999777775 22222233346777777666655443 33333322222 233222
Q ss_pred eccCCCCCCCCCCCCCCCCC------CceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhh
Q psy13078 202 HSVGTPVSGKHEFPEWPCDP------ERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLIL 275 (325)
Q Consensus 202 HSvG~pl~~~~~~~~Wpcn~------~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIl 275 (325)
-.+=.| .|++|| ..++|+.+++.+.+.=-|+.|+|-- ||. .|+....++.+.|-|.=|---.
T Consensus 184 tIi~~P--------~f~a~~~~~G~~se~~i~in~~~~~~lI~GT~YaGEi---KKg-iFt~~~~ll~~rg~l~lHasa~ 251 (561)
T PTZ00311 184 TIYNAG--------EFKANRLIEGVTSETSVALNFKRREMVILGTQYAGEM---KKG-ILTVMMYLMPKQGVLPLHSSAN 251 (561)
T ss_pred EEEECC--------CCCCCcccCCCCcccEEEEEccCCeEEEEcccchhhh---HHH-HHHHHHHHHHHCCceeeeeeEe
Confidence 222222 233332 2368888999999999999999964 888 8999999999999997776544
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEeccccccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKGR 322 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~~ 322 (325)
. +.+|+..=|. --||.|||+|+.- ||| ..||||+.|-
T Consensus 252 v--~~~g~~~~ff--GlSGtGKtTLsa~----~~~--~li~DD~~gW 288 (561)
T PTZ00311 252 V--GKKGDVTLFF--GLSGTGKTTLSAD----PNR--KLIGDDEHVW 288 (561)
T ss_pred e--CCCCCEEEEE--ccCCCCHHHhccC----CCC--ceeecccccc
Confidence 1 3456654333 5899999999873 588 7799998763
No 10
>PLN02597 phosphoenolpyruvate carboxykinase [ATP]
Probab=97.72 E-value=0.0013 Score=68.66 Aligned_cols=245 Identities=17% Similarity=0.130 Sum_probs=160.1
Q ss_pred HhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCccCCC
Q psy13078 41 VELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTL 120 (325)
Q Consensus 41 a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~~~l 120 (325)
..-++|..||+.-..+| |.+++++.++=.-+. --|...+.|... ..|.-..-||+-+...+..-.= | ++..
T Consensus 27 ~~~~~~~~v~~nl~~~~----Lye~Al~~~eG~l~~-~~GaL~v~TGk~-TGRSP~DKfIV~d~~t~~~iwW--g-~g~v 97 (555)
T PLN02597 27 DSGLKFTHVLYNLSPAE----LYEQAIKYEKGSFIT-STGALATLSGAK-TGRSPKDKRVVRDETTEDELWW--G-KGSP 97 (555)
T ss_pred cccCCcceEEeCCCHHH----HHHHHHHhCCCeEEe-cCCCEEecCCCc-CCCCcccceecCCCCcccceec--c-CCcc
Confidence 34578889998875444 666777655433221 125566655554 7788888888844332211000 0 1124
Q ss_pred ccccCHHHHHHHHHhcCccccCCCe-EEEEecccCCCCCCCCccee-eccCchhHHhhhhhcc-ccCHHHHHhcCCCCCc
Q psy13078 121 GNWISPQDYEEAIMQRFPGCMKGRT-MYVIPFSMGPVGSPLSKIGV-EITDSPYVVGSMRIMT-RIGTPVLNLLDADQPF 197 (325)
Q Consensus 121 ~nwm~~~~~~~~l~~~f~G~M~GRt-MyViPfsmGPigsp~s~~GV-qlTDS~YVv~sm~imt-R~g~~v~d~l~~~~~F 197 (325)
|+-++++.+. .|.+++-.-+++|. +||+==-.|- .|-..+-| -+|..+|-.+-|+-|. |-..+.++..++. +|
T Consensus 98 N~p~~~~~f~-~l~~~~~~~l~~~~~lfv~D~~~Ga--d~~~r~~vRvite~aw~alF~~nmfirP~~~el~~f~~P-df 173 (555)
T PLN02597 98 NIEMDEETFL-VNRERAVDYLNSLDKVFVNDQFLNW--DPENRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFGTP-DF 173 (555)
T ss_pred CccCCHHHHH-HHHHHHHHHHccCCCEEEEeeeecc--CccceeeEEEEeCHHHHHHHHHhcCCCCChHHhccCCCC-CE
Confidence 6778888776 66777777788766 9999877775 33333433 4688888877776655 4344444443222 44
Q ss_pred eeeeeccCCCCCCCCCCCCCC--CCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhh-
Q psy13078 198 VKALHSVGTPVSGKHEFPEWP--CDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLI- 274 (325)
Q Consensus 198 vr~vHSvG~pl~~~~~~~~Wp--cn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlI- 274 (325)
+ -+|.-+.|-+ +|. ++.+ ++|+.+++.+.+.=-|+.|+|-. ||. .+++..+++.+.|-|.=|---
T Consensus 174 t-Ii~ap~f~a~------~~~~g~~Se-~~i~in~~~~~~lI~GT~YaGE~---KK~-iFs~~~~ll~~rg~l~mHasaN 241 (555)
T PLN02597 174 T-IYNAGQFPCN------RYTHYMTSS-TSIDLNLKRKEMVILGTQYAGEM---KKG-LFSLMHYLMPMRGILSLHSGCN 241 (555)
T ss_pred E-EEeCCCCCCC------ccccCCCCC-cEEEEEccCCeEEEEccchhhhh---HHH-HHHHHHHHHHHCCcEeecCeec
Confidence 3 3444333222 232 4555 68888999999999999999985 888 899999999999999988765
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
+ +.+|+..=|. --||.|||+|+. .||+ ..||||--|
T Consensus 242 v---~~~g~~~lff--GlSGtGKTTLsa----d~~~--~li~DDEHg 277 (555)
T PLN02597 242 M---GKDGDVALFF--GLSGTGKTTLST----DPNR--YLIGDDEHC 277 (555)
T ss_pred c---CCCCcEEEEE--ecCCCCccceec----CCCC--ceeeccccc
Confidence 3 4456654444 479999999985 3899 899999544
No 11
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.68 E-value=1.4e-05 Score=66.92 Aligned_cols=49 Identities=22% Similarity=0.106 Sum_probs=38.9
Q ss_pred chhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 266 GWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 266 GWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
||+|.|..-+.+.. |+ +++-..|||||||+|+++.+ ..++++.|||++.
T Consensus 1 ~~~aL~~vsl~i~~--ge--~v~I~GpSGsGKSTLl~~l~---~G~i~~~g~di~~ 49 (107)
T cd00820 1 GTTSLHGVLVDVYG--KV--GVLITGDSGIGKTELALELI---KRKHRLVGDDNVE 49 (107)
T ss_pred CceEEEeeEEEEcC--CE--EEEEEcCCCCCHHHHHHHhh---CCeEEEeeEeHHH
Confidence 68889988776643 44 45556999999999999876 5689999999864
No 12
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=97.45 E-value=0.008 Score=62.42 Aligned_cols=221 Identities=21% Similarity=0.263 Sum_probs=140.8
Q ss_pred HHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCcc-CCCccccCHHHHHHHHHhcCc
Q psy13078 60 KELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVK-GTLGNWISPQDYEEAIMQRFP 138 (325)
Q Consensus 60 ~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~-~~l~nwm~~~~~~~~l~~~f~ 138 (325)
.+|.++++++++-+-- . -|...+.|.. =..|.-...||+-+...+. .+- +..|+-++++++.+-+++. -
T Consensus 10 ~eL~E~A~~~~eg~~t-~-~GaL~v~TG~-~TGRSPkDkfIV~~~~t~~------~i~wg~vn~~~~~~~f~~L~~~~-~ 79 (508)
T cd00484 10 AELYEEALKRGEGVLT-S-TGALAVDTGK-KTGRSPKDKFIVDEPSSED------DIWWGKVNQPISEETFEILRERA-V 79 (508)
T ss_pred HHHHHHHHhCCCCEEe-c-CCCeEeccCC-ccCCCCCceeEeCCCCccc------cccccccCcCCCHHHHHHHHHHH-H
Confidence 4577777777654432 2 2555554433 3778888899984433221 111 2345778888876655544 3
Q ss_pred cccCCCeEEEEecccCCCCCCCCcce-eeccCchhHHhhhhhcc-ccCHHHHHhcCCCCCceeeeeccCCCCCCCCCCCC
Q psy13078 139 GCMKGRTMYVIPFSMGPVGSPLSKIG-VEITDSPYVVGSMRIMT-RIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPE 216 (325)
Q Consensus 139 G~M~GRtMyViPfsmGPigsp~s~~G-VqlTDS~YVv~sm~imt-R~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~~~~ 216 (325)
--.++|.+||+==-.|- .|-..+- =-+|..+|-.+-|+=|. |-..+.++... .+|+= += ...
T Consensus 80 ~yl~~~~lyv~D~~vGa--dp~~r~~vRvi~~~a~~alF~~nmfi~P~~eel~~f~--pdftI----~~--------~P~ 143 (508)
T cd00484 80 DYLNTKKLFVFDGFAGA--DPEYRLKVRVITERAWHALFMRNMFIRPTEEELENFG--PDFTI----YN--------APK 143 (508)
T ss_pred HHhcCCCEEEEeeeeec--CcccceeeEEEECHHHHHHHHHhCCCCCChHHhccCC--cCEEE----EE--------CCC
Confidence 44566889999888876 3433333 34677777655554433 43333333222 13321 11 224
Q ss_pred CCCCC------CceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhh-hceeCCCCceEEEEe
Q psy13078 217 WPCDP------ERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLI-LGITNPEGQKKYIAA 289 (325)
Q Consensus 217 Wpcn~------~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlI-lgit~P~G~~~yiaa 289 (325)
|++|| ..++|+.+++.+.+.=-|+.|+|-- ||. .|++...++.+.|-|+=|--- + +.+|+..=|.
T Consensus 144 f~~~~~~~G~~s~~~iiin~~~~~~lI~GT~YaGEi---KKg-if~~~~~ll~~~g~l~lH~sanv---~~~~~~~~ff- 215 (508)
T cd00484 144 FKANPETDGMNSETFVIINFAEREMVIGGTEYAGEM---KKG-IFSVMNYLLPKKGVLSMHCSANV---GKKGDVALFF- 215 (508)
T ss_pred CcCCccccCCCcccEEEEEccCCeEEEECccchhhh---HHH-HHHHHHHHHHhCCcEeecccccc---CCCCCEEEEE-
Confidence 66554 2468999999999999999999964 888 899999999999999999765 4 3456553333
Q ss_pred ecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 290 AFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 290 AFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
--||.|||+|+.- | -. ..||||.-|
T Consensus 216 -GlSGtGKtTLsa~-~--~r---~li~DDehg 240 (508)
T cd00484 216 -GLSGTGKTTLSAD-P--NR---KLIGDDEHG 240 (508)
T ss_pred -ecCCCCHHHhccC-c--cC---Ceecccccc
Confidence 5799999999853 2 11 789999754
No 13
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=96.48 E-value=0.072 Score=55.79 Aligned_cols=233 Identities=15% Similarity=0.199 Sum_probs=143.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhc-----CcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCcc-CCC
Q psy13078 47 SDVHICDGSEREYKELIDLMVKD-----KTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVK-GTL 120 (325)
Q Consensus 47 ~~I~icdGS~eE~~~l~~~l~~~-----G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~-~~l 120 (325)
..||+.-. . .+|.++++++ ++- .+.. -|...+.|... ..|.-...||+-+...+.. +- +..
T Consensus 19 ~~v~~Nl~-~---~~L~e~a~~~~~~~~~eg-~~t~-~Gal~v~TG~~-TGRSpkDK~IV~~~~t~~~------i~Wg~v 85 (532)
T TIGR00224 19 HDIVYNPS-Y---AQLYEEELKPSLTGYEKG-VLTS-TGAVAVDTGIF-TGRSPKDKYIVEDETTKDT------IWWGPV 85 (532)
T ss_pred ceEEeCCC-H---HHHHHHHHhhccccCCCc-eecc-CCceEEecCCe-eCCCcCceEEeCCCCcccc------cccCcC
Confidence 56766553 3 3477777777 332 2222 36666655443 7888888899833322110 11 223
Q ss_pred ccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhcccc-CHHHHHhcCCCCCcee
Q psy13078 121 GNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRI-GTPVLNLLDADQPFVK 199 (325)
Q Consensus 121 ~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imtR~-g~~v~d~l~~~~~Fvr 199 (325)
|+-++++.+.. |.+++.--+++|.+||+==-+|- .......-=-+|.-+|-.+-|+-|... -.+.++... .+|.
T Consensus 86 N~p~~~~~f~~-L~~~v~~~l~~~~lyv~D~~~Ga-Dp~~rl~vRvite~AwhalF~~nmfirP~~eel~~fe--Pdft- 160 (532)
T TIGR00224 86 NKPLSEETWQH-LKGLVTRQLSRKRLFVVDAFCGA-DPKYRLSVRVVTEVAWQAHFVKNMFIRPTEEELAGFE--PDFT- 160 (532)
T ss_pred CcCCCHHHHHH-HHHHHHHHhcCCCEEEEeeeecc-CcccceeEEEEEcHHHHHHHHHhhCCCCChHHhccCC--CCEE-
Confidence 46677777644 44444445568999999887775 233333344467788877777765532 333232221 1332
Q ss_pred eeeccCCCCCCCCCCCCCC---CCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhh-h
Q psy13078 200 ALHSVGTPVSGKHEFPEWP---CDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLI-L 275 (325)
Q Consensus 200 ~vHSvG~pl~~~~~~~~Wp---cn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlI-l 275 (325)
-+|.-+.+ +..|. ++++ ++|+.+++.+.+.=.|+.|+|-- ||. -+.+..++..+.|-|.=|--- +
T Consensus 161 I~~~p~f~------~ad~~~~g~~S~-~~i~in~~~~~~lI~GT~YaGEi---KKg-iFs~~~~ll~~rg~l~lH~sanv 229 (532)
T TIGR00224 161 VMNGAKFT------NPNWKEQGLNSE-NFVAFNLTERMQLIGGTWYGGEM---KKG-MFSMMNYLLPLKGILSMHCSANV 229 (532)
T ss_pred EEeCCCCC------CCCcccCCCCcC-cEEEEecccCeEEEECcchhhhh---HHH-HHHHHHHHHHhCCeEeecCeeee
Confidence 12222211 12232 2454 69999999999999999999985 888 899999999999999988765 4
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDI 319 (325)
+ .+|+..=|. --||.|||+|+.- |- . ..||||=
T Consensus 230 ~---~~g~~~~ff--GlSGtGKTTLsad-~~--r---~li~DDE 262 (532)
T TIGR00224 230 G---EKGDVALFF--GLSGTGKTTLSTD-PK--R---RLIGDDE 262 (532)
T ss_pred C---CCCCEEEEE--ecCCCChhhhhcc-cc--c---ccccccc
Confidence 3 456543333 5799999999863 21 1 7888884
No 14
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=89.27 E-value=0.25 Score=49.32 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=28.4
Q ss_pred CCCCceEEEEeecCCccChhhhcccCC----CCCCceEEEecccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLNP----TLPGYKVECVGVPYKG 321 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~p----~~pGwkv~~VGDDIA~ 321 (325)
=++|+ |+|==-|||||||+|-++.. +-.| +|..-|-||.+
T Consensus 28 i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~ 71 (352)
T COG3842 28 IKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITD 71 (352)
T ss_pred ecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCC
Confidence 34565 44445899999999987652 3344 78888888875
No 15
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=83.63 E-value=3.2 Score=42.10 Aligned_cols=108 Identities=26% Similarity=0.405 Sum_probs=70.2
Q ss_pred ccCHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEE
Q psy13078 28 AISPKLKSFIDNCVE-----LCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFI 100 (325)
Q Consensus 28 ~l~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI 100 (325)
.-.++++++|++... -|.|++|+|++|+++=.+.+.+.+++.|..+-.. .|++.. -+.+.-.-.++
T Consensus 132 ~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~-------~~~~~~g~~~~ 204 (459)
T COG1167 132 AGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL-------QALEALGARVI 204 (459)
T ss_pred CCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH-------HHHHHcCCcEE
Confidence 445566666666554 7999999999999999998877766655444332 122211 11222222222
Q ss_pred EcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc
Q psy13078 101 CTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK 162 (325)
Q Consensus 101 ~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~ 162 (325)
- +|... +=|+++++.+.+... +=|=+||+|-.-=|.|.-+|.
T Consensus 205 ~-------vp~d~--------~G~~~e~le~~~~~~-----~~k~~y~~P~~qNPtG~tms~ 246 (459)
T COG1167 205 P-------VPVDE--------DGIDPEALEEALAQW-----KPKAVYVTPTFQNPTGVTMSL 246 (459)
T ss_pred e-------cCCCC--------CCCCHHHHHHHHhhc-----CCcEEEECCCCCCCCCCccCH
Confidence 2 22222 235888888888776 779999999999999998773
No 16
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=83.51 E-value=0.68 Score=41.13 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=25.0
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---CCCCceEEEe
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECV 315 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~V 315 (325)
|.|+.+-|+| |+|||||.||+-.- ...|-+|-.+
T Consensus 17 ~~g~i~~i~G--~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 17 ERGTVTQVYG--PPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred cCCeEEEEEC--CCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 6788888885 99999999987432 1346676555
No 17
>PRK06696 uridine kinase; Validated
Probab=83.50 E-value=0.74 Score=41.69 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=27.5
Q ss_pred CCceEEEEeecCCccChhhhcccC-CCCC--CceEEEec-ccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN-PTLP--GYKVECVG-VPY 319 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~-p~~p--Gwkv~~VG-DDI 319 (325)
.++..-|+-+.|||||||+||-.. -.++ |.+|-.++ ||.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 356788899999999999998643 2333 66666555 554
No 18
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=83.17 E-value=0.87 Score=41.40 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCceEEEEeecCCccChhhhcc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.++..-++-+-|||+|||+|+=
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~ 51 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAE 51 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 3566777778999999999763
No 19
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.02 E-value=1 Score=34.90 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=17.7
Q ss_pred CCCCceEEEEeecCCccChhhhccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.+.++..+|. .|+|||||.||..
T Consensus 16 ~~~~~~v~i~--G~~G~GKT~l~~~ 38 (151)
T cd00009 16 LPPPKNLLLY--GPPGTGKTTLARA 38 (151)
T ss_pred CCCCCeEEEE--CCCCCCHHHHHHH
Confidence 4456667776 8999999999864
No 20
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=82.39 E-value=1.2 Score=42.99 Aligned_cols=34 Identities=35% Similarity=0.635 Sum_probs=24.0
Q ss_pred eCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEE
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVE 313 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~ 313 (325)
.=|+++.+=+- -|||||||+|-= |...+||-+|+
T Consensus 29 ~i~~~~VTAlI--GPSGcGKST~LR~lNRmndl~~~~r~~ 66 (253)
T COG1117 29 DIPKNKVTALI--GPSGCGKSTLLRCLNRMNDLIPGARVE 66 (253)
T ss_pred eccCCceEEEE--CCCCcCHHHHHHHHHhhcccCcCceEE
Confidence 34778777666 799999998742 44667876654
No 21
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=81.50 E-value=0.92 Score=40.24 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=18.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
|.|+.+=|+ .|||||||.||+..
T Consensus 17 ~~g~v~~I~--G~~GsGKT~l~~~i 39 (226)
T cd01393 17 PTGRITEIF--GEFGSGKTQLCLQL 39 (226)
T ss_pred cCCcEEEEe--CCCCCChhHHHHHH
Confidence 568888888 49999999999843
No 22
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=81.40 E-value=1.2 Score=43.27 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=23.7
Q ss_pred ceEEEEeecCCccChhhhcc-cCCCCCCc----eEEEeccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAM-LNPTLPGY----KVECVGVP 318 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAM-l~p~~pGw----kv~~VGDD 318 (325)
+..-|+-|.|||||||+||- |.-.+..| +|.+++=|
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 44678889999999999983 21112211 67777744
No 23
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.10 E-value=1 Score=43.19 Aligned_cols=16 Identities=44% Similarity=0.715 Sum_probs=12.6
Q ss_pred EEEeecCCccChhhhc
Q psy13078 286 YIAAAFPSACGKTNLA 301 (325)
Q Consensus 286 yiaaAFPSaCGKTnlA 301 (325)
+++.--|||||||+|-
T Consensus 33 ~vv~lGpSGcGKTTLL 48 (259)
T COG4525 33 LVVVLGPSGCGKTTLL 48 (259)
T ss_pred EEEEEcCCCccHHHHH
Confidence 4555689999999874
No 24
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=79.81 E-value=1.3 Score=41.92 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=23.6
Q ss_pred CCCceEEEEeecCCccChhhhcc-----cCCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM-----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM-----l~p~~pGwkv~~VGDDIA 320 (325)
++|+..-|. -|||||||+|-= ..| .+=+|.+-|-|+.
T Consensus 29 ~~Ge~vaI~--GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 29 EAGEFVAIV--GPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 467766666 899999999732 223 3334566665554
No 25
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=79.26 E-value=1.1 Score=44.29 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.7
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+=|.| |+|||||+||+-
T Consensus 53 p~G~iteI~G--p~GsGKTtLal~ 74 (325)
T cd00983 53 PKGRIIEIYG--PESSGKTTLALH 74 (325)
T ss_pred cCCeEEEEEC--CCCCCHHHHHHH
Confidence 7899999986 999999999984
No 26
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.35 E-value=1.3 Score=42.73 Aligned_cols=38 Identities=34% Similarity=0.558 Sum_probs=22.4
Q ss_pred CCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
=++|+ |++-=-|||||||+|-= |..+..| .|.+-|..+
T Consensus 26 v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G-~V~~~g~~v 67 (248)
T COG1116 26 VEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSG-EVLLDGRPV 67 (248)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCccc
Confidence 34566 55555899999999832 2333334 255555544
No 27
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=78.32 E-value=1.8 Score=39.08 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
..|+..-+. .|||||||+|+-+. ++..|- |.+=|.+|.
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~i~ 66 (236)
T TIGR03864 25 RPGEFVALL--GPNGAGKSTLFSLLTRLYVAQEGQ-ISVAGHDLR 66 (236)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcc
Confidence 458888777 89999999997643 455673 665565553
No 28
>PLN02165 adenylate isopentenyltransferase
Probab=77.49 E-value=1.1 Score=44.65 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=24.6
Q ss_pred eCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEec
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VG 316 (325)
.|+.|+...|+ -|+|||||.||....-.-|+ ++|.
T Consensus 39 ~~~~g~iivIi--GPTGSGKStLA~~LA~~l~~--eIIs 73 (334)
T PLN02165 39 QNCKDKVVVIM--GATGSGKSRLSVDLATRFPS--EIIN 73 (334)
T ss_pred cCCCCCEEEEE--CCCCCcHHHHHHHHHHHcCC--ceec
Confidence 57788876666 79999999999854433344 4444
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=76.10 E-value=0.93 Score=43.25 Aligned_cols=37 Identities=38% Similarity=0.453 Sum_probs=23.0
Q ss_pred HHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCC
Q psy13078 255 LRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPT 306 (325)
Q Consensus 255 LRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~ 306 (325)
|++....|++.+---.||++- -|.|||||+||.+...
T Consensus 36 l~i~i~aa~~r~~~l~h~lf~---------------GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 36 LKILIRAAKKRGEALDHMLFY---------------GPPGLGKTTLARIIAN 72 (233)
T ss_dssp HHHHHHHHHCTTS---EEEEE---------------SSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCcceEEEE---------------CCCccchhHHHHHHHh
Confidence 566666565544334455533 5899999999998643
No 30
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=75.75 E-value=3.3 Score=38.97 Aligned_cols=36 Identities=33% Similarity=0.403 Sum_probs=23.9
Q ss_pred CCceEEEEeecCCccChhhh----cccCCCCCCceEEEecccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNL----AMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnl----AMl~p~~pGwkv~~VGDDI 319 (325)
.|+.+-|+ -||||||+.| |-|.|+..|- +.+=|.|+
T Consensus 28 ~Ge~iait--GPSG~GKStllk~va~Lisp~~G~-l~f~Ge~v 67 (223)
T COG4619 28 AGEFIAIT--GPSGCGKSTLLKIVASLISPTSGT-LLFEGEDV 67 (223)
T ss_pred CCceEEEe--CCCCccHHHHHHHHHhccCCCCce-EEEcCccc
Confidence 47766666 8999999986 5567776662 33344443
No 31
>PRK09354 recA recombinase A; Provisional
Probab=75.71 E-value=1.6 Score=43.64 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.7
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+=|.| |+|||||+||+-
T Consensus 58 p~G~IteI~G--~~GsGKTtLal~ 79 (349)
T PRK09354 58 PRGRIVEIYG--PESSGKTTLALH 79 (349)
T ss_pred cCCeEEEEEC--CCCCCHHHHHHH
Confidence 7899999996 999999999983
No 32
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.60 E-value=3.6 Score=36.33 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=28.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+...+. .|+|||||+|.-+. ++..| +|.+=|.||.
T Consensus 19 ~~i~~Ge~~~l~--G~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~~ 63 (211)
T cd03298 19 LTFAQGEITAIV--GPSGSGKSTLLNLIAGFETPQSG-RVLINGVDVT 63 (211)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcC
Confidence 444568888888 89999999997532 44556 4666666664
No 33
>PLN02348 phosphoribulokinase
Probab=75.40 E-value=1.9 Score=44.01 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.8
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
++..-|+-|-|||||||+||=
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~ 67 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMR 67 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456788899999999999873
No 34
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=75.12 E-value=1.7 Score=42.87 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=18.8
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+=|+| |+|||||+||+
T Consensus 53 p~G~iteI~G--~~GsGKTtLaL 73 (321)
T TIGR02012 53 PRGRIIEIYG--PESSGKTTLAL 73 (321)
T ss_pred cCCeEEEEEC--CCCCCHHHHHH
Confidence 7799999985 89999999987
No 35
>KOG0951|consensus
Probab=75.10 E-value=1.9 Score=49.88 Aligned_cols=43 Identities=35% Similarity=0.474 Sum_probs=32.3
Q ss_pred hhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 246 SLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 246 aLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+..|++- -.||.|.+.---=--+||||+. .|.|.||||-|||.
T Consensus 303 aF~g~~s-LNrIQS~v~daAl~~~EnmLlC---------------APTGaGKTNVAvLt 345 (1674)
T KOG0951|consen 303 AFFGKQS-LNRIQSKVYDAALRGDENMLLC---------------APTGAGKTNVAVLT 345 (1674)
T ss_pred hcccchh-hhHHHHHHHHHHhcCcCcEEEe---------------ccCCCCchHHHHHH
Confidence 3456666 7899998875555557888865 47889999999974
No 36
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=74.92 E-value=1.8 Score=41.02 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=18.1
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|..+=|+| |+|||||+||+
T Consensus 93 ~~g~i~ei~G--~~g~GKT~l~~ 113 (310)
T TIGR02236 93 ETQAITEVFG--EFGSGKTQICH 113 (310)
T ss_pred CCCeEEEEEC--CCCCCHHHHHH
Confidence 5688888884 99999999987
No 37
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=74.82 E-value=1.8 Score=41.46 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=18.5
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|..+=|+| |+|||||.||+
T Consensus 100 ~~g~vtei~G--~~GsGKT~l~~ 120 (317)
T PRK04301 100 ETQSITEFYG--EFGSGKTQICH 120 (317)
T ss_pred cCCcEEEEEC--CCCCCHhHHHH
Confidence 5688888885 99999999988
No 38
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=74.81 E-value=2.8 Score=37.90 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=26.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. -|||||||+|.-+. ++..| +|..-|.+++
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~ 68 (241)
T PRK10895 27 NSGEIVGLL--GPNGAGKTTTFYMVVGIVPRDAG-NIIIDDEDIS 68 (241)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECC
Confidence 468887777 79999999997533 33445 5777676664
No 39
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=73.95 E-value=3.1 Score=38.74 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=26.7
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
..|+.+-++ .|||||||+|+.+. ++..| +|.+=|.++.
T Consensus 36 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~sG-~i~~~g~~~~ 77 (268)
T PRK10419 36 KSGETVALL--GRSGCGKSTLARLLVGLESPSQG-NVSWRGEPLA 77 (268)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecc
Confidence 458887777 89999999998643 33445 5766666553
No 40
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=73.90 E-value=2.2 Score=38.12 Aligned_cols=23 Identities=26% Similarity=0.102 Sum_probs=18.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
|.|+.+=|+ .|||||||.||+..
T Consensus 17 ~~g~i~~i~--G~~GsGKT~l~~~l 39 (235)
T cd01123 17 ETGSITEIF--GEFGSGKTQLCHQL 39 (235)
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHH
Confidence 457777666 79999999999733
No 41
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=73.81 E-value=2.5 Score=37.72 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=24.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGV 317 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGD 317 (325)
++=+.|+..-+. -|||||||+|.-+.-...| +|...|.
T Consensus 16 l~i~~G~~~~l~--G~nG~GKSTLl~~il~~~G-~v~~~~~ 53 (176)
T cd03238 16 VSIPLNVLVVVT--GVSGSGKSTLVNEGLYASG-KARLISF 53 (176)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhhcCC-cEEECCc
Confidence 344668877777 8999999998654311223 4554444
No 42
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=73.64 E-value=2.1 Score=37.66 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=23.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGY 310 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGw 310 (325)
++=+.|+.+-+. .|||||||+|..+ .++..|.
T Consensus 26 ~~i~~G~~~~i~--G~nG~GKSTLl~~i~G~~~~~~G~ 61 (204)
T cd03250 26 LEVPKGELVAIV--GPVGSGKSSLLSALLGELEKLSGS 61 (204)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhCcCCCCCCe
Confidence 444679888888 8999999998763 3555664
No 43
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=73.51 E-value=2.5 Score=37.46 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=18.1
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++|+.+-+. .|||||||+|+-+
T Consensus 23 ~~Ge~~~l~--G~nGsGKSTLl~~ 44 (213)
T cd03235 23 KPGEFLAIV--GPNGAGKSTLLKA 44 (213)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 568888777 8999999999753
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=73.50 E-value=2.5 Score=37.51 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=25.9
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. -|||||||+|.-+ .++..| +|.+=|-|+
T Consensus 25 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 67 (216)
T TIGR00960 25 HITKGEMVFLV--GHSGAGKSTFLKLILGIEKPTRG-KIRFNGQDL 67 (216)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEeh
Confidence 33568888777 8999999998743 244456 355545444
No 45
>PRK08084 DNA replication initiation factor; Provisional
Probab=73.39 E-value=2.5 Score=38.89 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=17.8
Q ss_pred CCCCceEEEEeecCCccChhhhccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+++++..|+. .|+|||||-||..
T Consensus 42 ~~~~~~l~l~--Gp~G~GKThLl~a 64 (235)
T PRK08084 42 QEHSGYIYLW--SREGAGRSHLLHA 64 (235)
T ss_pred CCCCCeEEEE--CCCCCCHHHHHHH
Confidence 3445677888 7999999999864
No 46
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=73.29 E-value=2.1 Score=43.37 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=21.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++=|.|+++=|+ .|||||||+|+-+.
T Consensus 356 l~i~~G~~vaIv--G~SGsGKSTLl~lL 381 (529)
T TIGR02868 356 LDLPPGERVAIL--GPSGSGKSTLLMLL 381 (529)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 455779998888 89999999998754
No 47
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=73.20 E-value=2 Score=40.16 Aligned_cols=35 Identities=23% Similarity=0.061 Sum_probs=25.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC---CCCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN---PTLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~---p~~pGwkv~~VG 316 (325)
|.|..+-|+ -|+|||||.||+-. ...-|++|-.+.
T Consensus 34 p~gs~~lI~--G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINIT--GVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEE--cCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 668888887 79999999998832 224588875554
No 48
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=73.01 E-value=4.2 Score=39.54 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=28.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+..-|. .|||||||+|+.+. ++..| +|.+=|.||.
T Consensus 36 l~i~~Ge~~~Iv--G~sGsGKSTLl~~l~gl~~p~~G-~i~~~g~~l~ 80 (327)
T PRK11308 36 FTLERGKTLAVV--GESGCGKSTLARLLTMIETPTGG-ELYYQGQDLL 80 (327)
T ss_pred EEECCCCEEEEE--CCCCCcHHHHHHHHHcCCCCCCc-EEEECCEEcC
Confidence 344568877666 89999999997632 44456 4666666664
No 49
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.72 E-value=3.2 Score=36.72 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=22.8
Q ss_pred CceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
| ..-+ ..|||||||+|+-+. ++..| +|.+-|.++.
T Consensus 26 g-~~~i--~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~ 64 (211)
T cd03264 26 G-MYGL--LGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVL 64 (211)
T ss_pred C-cEEE--ECCCCCCHHHHHHHHhCCCCCCcc-EEEECCCccc
Confidence 6 4444 489999999997432 44566 4666665553
No 50
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=72.65 E-value=2.1 Score=42.67 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=23.5
Q ss_pred CCCceEEEEeecCCccChhhh----cccCCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNL----AMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnl----AMl~p~~pGwkv~~VGDDI 319 (325)
.+|+-.-+. -|||||||+| |-|.++..|- |.+=|.|+
T Consensus 27 ~~Gef~vll--GPSGcGKSTlLr~IAGLe~~~~G~-I~i~g~~v 67 (338)
T COG3839 27 EDGEFVVLL--GPSGCGKSTLLRMIAGLEEPTSGE-ILIDGRDV 67 (338)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCce-EEECCEEC
Confidence 456544444 8999999986 5566655564 44444444
No 51
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=72.35 E-value=2.7 Score=37.06 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=25.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|.-+. ++..| +|..=|.++
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 64 (205)
T cd03226 24 YAGEIIALT--GKNGAGKTTLAKILAGLIKESSG-SILLNGKPI 64 (205)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEEh
Confidence 458888777 89999999986432 45556 355555554
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=72.25 E-value=3.4 Score=36.48 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=26.2
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. -|||||||+|.-+. ++..| +|..-|.|+.
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~~~~G-~v~~~g~~~~ 65 (213)
T cd03301 24 ADGEFVVLL--GPSGCGKTTTLRMIAGLEEPTSG-RIYIGGRDVT 65 (213)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEECC
Confidence 457776666 89999999997533 33344 5777676664
No 53
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=72.21 E-value=3.5 Score=38.18 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=25.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
..|+.+-+. -|||||||+|+-+. |+..| +|..-|.|+.
T Consensus 35 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~ 76 (265)
T PRK10575 35 PAGKVTGLI--GHNGSGKSTLLKMLGRHQPPSEG-EILLDAQPLE 76 (265)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHcCCCCCCCC-EEEECCEehh
Confidence 357777666 79999999996532 44456 4666666653
No 54
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=72.20 E-value=2.7 Score=37.20 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=25.4
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. .|||||||+|+=+. |+..|- |..=|.++
T Consensus 26 ~i~~G~~~~l~--G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~ 68 (218)
T cd03255 26 SIEKGEFVAIV--GPSGSGKSTLLNILGGLDRPTSGE-VRVDGTDI 68 (218)
T ss_pred EEcCCCEEEEE--cCCCCCHHHHHHHHhCCcCCCcee-EEECCEeh
Confidence 33568887777 89999999986432 444563 54444444
No 55
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.90 E-value=3.6 Score=37.34 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYKG 321 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA~ 321 (325)
..|+.+-|. .|||||||.|.-+. ++..| +|..-|.|++.
T Consensus 23 ~~Ge~~~i~--G~nG~GKStLl~~l~G~~~p~~G-~v~i~g~~~~~ 65 (235)
T cd03299 23 ERGDYFVIL--GPTGSGKSVLLETIAGFIKPDSG-KILLNGKDITN 65 (235)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcCc
Confidence 458888887 89999999997643 44456 46666666543
No 56
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=71.63 E-value=2.9 Score=37.69 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=26.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|+-+. ++..| +|.+=|.||
T Consensus 23 ~~i~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 66 (243)
T TIGR02315 23 LNINPGEFVAII--GPSGAGKSTLLRCINRLVEPSSG-SILLEGTDI 66 (243)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCcCCCcc-EEEECCEEh
Confidence 333568887777 89999999996532 44455 355555554
No 57
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.58 E-value=2.9 Score=38.04 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=25.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CC-----CCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PT-----LPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~-----~pGwkv~~VGDDIA 320 (325)
++|+..-|. .|||||||+|+-+. ++ ..| +|..=|.||.
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~ 73 (250)
T PRK14247 27 PDNTITALM--GPSGSGKSTLLRVFNRLIELYPEARVSG-EVYLDGQDIF 73 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhccCCCCCCCCCce-EEEECCEECC
Confidence 468887777 89999999998644 21 234 4666666653
No 58
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=71.49 E-value=2.9 Score=36.85 Aligned_cols=37 Identities=27% Similarity=0.265 Sum_probs=24.8
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|+- +.++..|. |..=|.++
T Consensus 25 ~~G~~~~l~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~ 65 (211)
T cd03225 25 KKGEFVLIV--GPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDL 65 (211)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhcCCCCCCce-EEECCEEc
Confidence 468877777 899999999963 22444553 55545554
No 59
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=71.37 E-value=2.6 Score=37.77 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCCccChhhhcc--cC-CCCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM--LN-PTLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM--l~-p~~pGwkv~~VG 316 (325)
|.|+..-|+ -|+|||||.||+ +. -..+|.+|-.|.
T Consensus 18 ~~G~~~~i~--G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 18 PRGFFVAVT--GEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred cCCeEEEEE--CCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 568777777 499999999985 21 224677776554
No 60
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=71.22 E-value=3.9 Score=42.56 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=29.2
Q ss_pred hHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCC-CC--CCceEEEec
Q psy13078 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNP-TL--PGYKVECVG 316 (325)
Q Consensus 268 LAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p-~~--pGwkv~~VG 316 (325)
|++|.--.+ .+..-+-..|+-+.|||||||+|+-..- .+ .|.++-.|.
T Consensus 197 i~~h~~~~~-~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvIS 247 (460)
T PLN03046 197 IAEHRSKFK-DGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLS 247 (460)
T ss_pred HHHHHHHhc-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 666764332 0111145788899999999999974321 11 377766664
No 61
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=71.15 E-value=3.9 Score=37.50 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=26.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CC----CCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PT----LPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~----~pGwkv~~VGDDI 319 (325)
+.|+.+.+. .|||||||+|+-+. ++ ..| +|..=|.+|
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~~~~~~~~G-~i~~~g~~i 71 (254)
T PRK10418 27 QRGRVLALV--GGSGSGKSLTCAAALGILPAGVRQTAG-RVLLDGKPV 71 (254)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCCCcCC-EEEECCeec
Confidence 468888888 89999999998642 33 456 366555555
No 62
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=70.94 E-value=5.6 Score=41.87 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=29.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc--cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM--LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM--l~p~~pGwkv~~VGDDIA 320 (325)
++=++|+...++ .|||||||+|.= +..+..|-+|..=|=|+.
T Consensus 27 l~i~~GEiv~L~--G~SGsGKSTLLr~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 27 KELPSSSLLFLC--GSSGDGKSEILAENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred eeecCCCEEEEE--CCCCCCHHHHHhcCCCCCCCCCEEEECCEECC
Confidence 344789999998 799999998842 223345656776665554
No 63
>PRK03846 adenylylsulfate kinase; Provisional
Probab=70.85 E-value=3.1 Score=36.90 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=28.3
Q ss_pred eCCCCceEEEEeecCCccChhhhcccCC-CC--CCceEEEe-ccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLNP-TL--PGYKVECV-GVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~p-~~--pGwkv~~V-GDDIA 320 (325)
..++|....++ -+||||||+||-+.- .+ .|+.+-++ ||+|-
T Consensus 20 ~~~~~~~i~i~--G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 20 HGHKGVVLWFT--GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred cCCCCEEEEEE--CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 35678888888 679999999886442 22 47765666 57653
No 64
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.70 E-value=3.1 Score=37.47 Aligned_cols=40 Identities=28% Similarity=0.232 Sum_probs=26.4
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|+-+ .++..| +|..=|.++
T Consensus 21 ~~i~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~ 64 (235)
T cd03261 21 LDVRRGEILAII--GPSGSGKSTLLRLIVGLLRPDSG-EVLIDGEDI 64 (235)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEc
Confidence 334568888887 8999999998642 244456 355555554
No 65
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.69 E-value=4.1 Score=36.59 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=27.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+.+-+. .|||||||+|.-+. |+..| +|.+=|.|+.
T Consensus 26 ~~i~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~ 70 (233)
T cd03258 26 LSVPKGEIFGII--GRSGAGKSTLIRCINGLERPTSG-SVLVDGTDLT 70 (233)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcc
Confidence 333568888777 89999999996532 45556 3555555553
No 66
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=70.52 E-value=3.2 Score=37.12 Aligned_cols=39 Identities=33% Similarity=0.419 Sum_probs=26.8
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----C-----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----N-----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~-----p~~pGwkv~~VGDDI 319 (325)
+=+.|+..-+. -|||||||+|+-+ . ++..|. |.+=|.|+
T Consensus 22 ~i~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~~~~~~~~~G~-i~~~g~~~ 69 (227)
T cd03260 22 DIPKGEITALI--GPSGCGKSTLLRLLNRLNDLIPGAPDEGE-VLLDGKDI 69 (227)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHHhhcccccCCCCCeE-EEECCEEh
Confidence 33468888888 7999999999643 2 445564 66656555
No 67
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=70.31 E-value=3 Score=41.16 Aligned_cols=41 Identities=29% Similarity=0.343 Sum_probs=24.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhc-ccC---CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLA-MLN---PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlA-Ml~---p~~pGwkv~~VGDDIA 320 (325)
++=++|+-.-+ --|||||||+|- |++ .+..| +|.+=|-||.
T Consensus 22 l~I~~gef~vl--iGpSGsGKTTtLkMINrLiept~G-~I~i~g~~i~ 66 (309)
T COG1125 22 LTIEEGEFLVL--IGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDIS 66 (309)
T ss_pred EEecCCeEEEE--ECCCCCcHHHHHHHHhcccCCCCc-eEEECCeecc
Confidence 44466764444 489999999874 433 33344 3555565554
No 68
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=70.23 E-value=1.8 Score=34.98 Aligned_cols=13 Identities=38% Similarity=0.416 Sum_probs=11.7
Q ss_pred cCCccChhhhccc
Q psy13078 291 FPSACGKTNLAML 303 (325)
Q Consensus 291 FPSaCGKTnlAMl 303 (325)
-|+|||||.||..
T Consensus 5 G~~G~GKS~l~~~ 17 (107)
T PF00910_consen 5 GPPGIGKSTLAKE 17 (107)
T ss_pred CCCCCCHHHHHHH
Confidence 5889999999987
No 69
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=70.19 E-value=3.3 Score=35.83 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=26.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+..-+. .|+|||||+|+-+. |+..| +|.+=|.++
T Consensus 23 ~~i~~Ge~~~i~--G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~ 66 (178)
T cd03247 23 LELKQGEKIALL--GRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPV 66 (178)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhccCCCCCC-EEEECCEEH
Confidence 444678887777 89999999997532 44556 355444444
No 70
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=70.15 E-value=2.8 Score=40.59 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=19.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=..|+..=+. -|||||||+||.+
T Consensus 28 ~~i~~Ge~lgiv--GeSGsGKSTL~r~ 52 (252)
T COG1124 28 LEIERGETLGIV--GESGSGKSTLARL 52 (252)
T ss_pred EEecCCCEEEEE--cCCCCCHHHHHHH
Confidence 444568776665 7999999999874
No 71
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=70.10 E-value=3.4 Score=37.62 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=17.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
++=+.|+..=++ -|||||||+|+
T Consensus 16 l~i~~Ge~~~l~--G~sGsGKSTL~ 38 (226)
T cd03270 16 VDIPRNKLVVIT--GVSGSGKSSLA 38 (226)
T ss_pred eecCCCcEEEEE--cCCCCCHHHHH
Confidence 445678866555 89999999996
No 72
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.08 E-value=3.1 Score=37.13 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=25.7
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. .|||||||+|.-+. ++..| +|..=|-++
T Consensus 26 ~i~~G~~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 68 (220)
T cd03293 26 SVEEGEFVALV--GPSGCGKSTLLRIIAGLERPTSG-EVLVDGEPV 68 (220)
T ss_pred EEeCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 33468887777 89999999997543 33345 455545444
No 73
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=69.72 E-value=3.2 Score=38.30 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=25.1
Q ss_pred CCCceEEEEeecCCccChhhhcc--cCCC-CCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM--LNPT-LPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM--l~p~-~pGwkv~~VG 316 (325)
|.|+.+-+. -|+|||||.||+ +.-. -+|+++-.|.
T Consensus 22 ~~g~~~~i~--G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIE--GDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 678877777 799999999974 3222 3688876554
No 74
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=69.67 E-value=3 Score=37.34 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=26.0
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---CCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG 316 (325)
|.|..+-|+| |+|+|||.||+-.- ...|.+|-.|.
T Consensus 21 ~~g~i~~i~G--~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 21 ERGTITQIYG--PPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CCCeEEEEEC--CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6788888885 99999999987432 13577776664
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=69.24 E-value=3.4 Score=36.66 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|.-+. ++..| .|.+=|.++
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 64 (222)
T cd03224 24 PEGEIVALL--GRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDI 64 (222)
T ss_pred cCCeEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEc
Confidence 457777777 89999999997532 44455 355545444
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=69.13 E-value=3.5 Score=36.33 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=26.3
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
+.|+.+-|. .|||||||+|.- +.|+..| +|..=|.++.
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~ 65 (208)
T cd03268 24 KKGEIYGFL--GPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQ 65 (208)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCcCCCce-EEEECCCccc
Confidence 468877777 899999999863 2355566 4666565553
No 77
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=68.86 E-value=4.2 Score=41.16 Aligned_cols=41 Identities=32% Similarity=0.487 Sum_probs=28.4
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+++-|+ .|||||||+|+-+. ++..| +|..=|.||.
T Consensus 343 l~i~~G~~~~iv--G~sGsGKSTL~~ll~g~~~~~~G-~I~~~g~~i~ 387 (529)
T TIGR02857 343 FTVPPGERVALV--GPSGAGKSTLLNLLLGFVDPTEG-SIAVNGVPLA 387 (529)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEehh
Confidence 344679999888 79999999987643 44455 4555555543
No 78
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=68.82 E-value=3.6 Score=37.25 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=25.6
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
..|+...+. .|||||||+|+-+ .++..|- |..=|.||
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~ 66 (242)
T PRK11124 26 PQGETLVLL--GPSGAGKSSLLRVLNLLEMPRSGT-LNIAGNHF 66 (242)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEec
Confidence 468887777 8999999998742 2445563 66655554
No 79
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=68.67 E-value=2 Score=39.41 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=10.7
Q ss_pred eecCCccChhhhc
Q psy13078 289 AAFPSACGKTNLA 301 (325)
Q Consensus 289 aAFPSaCGKTnlA 301 (325)
---|||||||||.
T Consensus 30 IvG~NGsGKStll 42 (251)
T cd03273 30 ITGLNGSGKSNIL 42 (251)
T ss_pred EECCCCCCHHHHH
Confidence 3379999999993
No 80
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.61 E-value=3.8 Score=36.76 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=25.8
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. .|||||||+|+-+. ++..|- |.+=|.|+
T Consensus 23 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~ 65 (241)
T cd03256 23 SINPGEFVALI--GPSGAGKSTLLRCLNGLVEPTSGS-VLIDGTDI 65 (241)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhCCcCCCCce-EEECCEec
Confidence 33568887777 79999999997533 444553 44445444
No 81
>KOG1970|consensus
Probab=68.51 E-value=2.9 Score=44.84 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=29.7
Q ss_pred hhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceE
Q psy13078 263 KREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKV 312 (325)
Q Consensus 263 r~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv 312 (325)
-=+-||- |..-. -.+-+++..++| .|||||||++.=+...+=|+++
T Consensus 93 eVk~WL~-~~~~~-~~~l~~~iLLlt--GPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 93 EVKQWLK-QVAEF-TPKLGSRILLLT--GPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred HHHHHHH-HHHHh-ccCCCceEEEEe--CCCCCCchhHHHHHHHhhCcee
Confidence 3455887 54433 222337899999 7999999988544444455554
No 82
>PRK05439 pantothenate kinase; Provisional
Probab=68.49 E-value=6.1 Score=38.88 Aligned_cols=36 Identities=31% Similarity=0.129 Sum_probs=25.4
Q ss_pred CCceEEEEeecCCccChhhhcccC-CC---C-CCceEEEec
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN-PT---L-PGYKVECVG 316 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~-p~---~-pGwkv~~VG 316 (325)
.++..-|.-|.|+|||||+||=.. -- . .|-+|.+|.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 366778888999999999998422 11 1 355777765
No 83
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=68.43 E-value=3.6 Score=36.04 Aligned_cols=37 Identities=24% Similarity=0.155 Sum_probs=25.1
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+..-+. .|||||||+|.-+. ++..| +|..-|-+|
T Consensus 22 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 62 (206)
T TIGR03608 22 EKGKMYAII--GESGSGKSTLLNIIGLLEKFDSG-QVYLNGKET 62 (206)
T ss_pred eCCcEEEEE--CCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEc
Confidence 468887777 89999999986432 44456 455555553
No 84
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.32 E-value=3.2 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.9
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
..|+..-+. -|||||||+|+.+
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~~ 45 (210)
T cd03269 24 EKGEIFGLL--GPNGAGKTTTIRM 45 (210)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 458887777 8999999999753
No 85
>PTZ00035 Rad51 protein; Provisional
Probab=68.30 E-value=3.1 Score=40.96 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.9
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+-|.| |+|||||.|++.
T Consensus 116 ~~G~iteI~G--~~GsGKT~l~~~ 137 (337)
T PTZ00035 116 ETGSITELFG--EFRTGKTQLCHT 137 (337)
T ss_pred CCCeEEEEEC--CCCCchhHHHHH
Confidence 5688898985 999999999874
No 86
>KOG0060|consensus
Probab=67.95 E-value=3.6 Score=44.28 Aligned_cols=24 Identities=46% Similarity=0.749 Sum_probs=20.1
Q ss_pred ceeCCCCceEEEEeecCCccChhhhc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
...=|+|+..-|| -|||||||+|-
T Consensus 455 s~~V~~g~~LLIt--G~sG~GKtSLl 478 (659)
T KOG0060|consen 455 SLEVPSGQNLLIT--GPSGCGKTSLL 478 (659)
T ss_pred eeEecCCCeEEEE--CCCCCchhHHH
Confidence 3445889999999 79999999983
No 87
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=67.67 E-value=5 Score=36.80 Aligned_cols=36 Identities=25% Similarity=0.066 Sum_probs=25.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVP 318 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDD 318 (325)
..|+..-|. -|||||||+|+-+. ++..| +|.+=|.|
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~ 69 (258)
T PRK11701 30 YPGEVLGIV--GESGSGKTTLLNALSARLAPDAG-EVHYRMRD 69 (258)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCC-EEEECCcc
Confidence 458877777 79999999997532 44556 46666655
No 88
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=67.65 E-value=4 Score=36.24 Aligned_cols=40 Identities=28% Similarity=0.225 Sum_probs=26.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|.-+. ++..| .|..=|.++
T Consensus 25 ~~i~~G~~~~i~--G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~ 68 (220)
T cd03245 25 LTIRAGEKVAII--GRVGSGKSTLLKLLAGLYKPTSG-SVLLDGTDI 68 (220)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCcCCCCC-eEEECCEEh
Confidence 333568888777 89999999997422 34445 455555544
No 89
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.56 E-value=3.5 Score=36.84 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=26.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|..+. |+..| +|.+=|.+|
T Consensus 24 l~i~~G~~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 67 (229)
T cd03254 24 FSIKPGETVAIV--GPTGAGKTTLINLLMRFYDPQKG-QILIDGIDI 67 (229)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCcCCCCC-EEEECCEeH
Confidence 344678876666 89999999997533 55556 355444444
No 90
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=67.52 E-value=4 Score=36.70 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC------CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN------PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~------p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|.=+. ++..| +|..=|.|+
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~ 66 (243)
T TIGR01978 24 KKGEIHAIM--GPNGSGKSTLSKTIAGHPSYEVTSG-TILFKGQDL 66 (243)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCCcc-eEEECCEec
Confidence 468887777 89999999986321 23445 355555544
No 91
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=67.51 E-value=4.3 Score=42.49 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=21.4
Q ss_pred hcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 264 REGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 264 ~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
=+-||.++.. ..+..+...++ .|+|||||.+.=
T Consensus 31 V~~wl~~~~~----~~~~~~iLlLt--GP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFS----GSSPKRILLLT--GPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhc----cCCCcceEEEE--CCCCCCHHHHHH
Confidence 4569976542 12334555556 899999998753
No 92
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=67.29 E-value=3.5 Score=36.61 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=26.6
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+=+.|+..-+. -|||||||+|.-+. ++..|- |.+=|.+|
T Consensus 27 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~ 69 (228)
T cd03257 27 SIKKGETLGLV--GESGSGKSTLARAILGLLKPTSGS-IIFDGKDL 69 (228)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCce-EEECCEEc
Confidence 33568877777 89999999997643 455564 55555554
No 93
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.19 E-value=7 Score=38.11 Aligned_cols=43 Identities=23% Similarity=0.154 Sum_probs=32.9
Q ss_pred eeCCCCceEEEEeecCCccChhhh----cccCCCCCCceEEEeccccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNL----AMLNPTLPGYKVECVGVPYKGR 322 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnl----AMl~p~~pGwkv~~VGDDIA~~ 322 (325)
++=|.|+..=|- -|||||||.| +.+.+|..| +|++-|.||-+.
T Consensus 29 l~V~~Gei~~ii--GgSGsGKStlLr~I~Gll~P~~G-eI~i~G~~i~~l 75 (263)
T COG1127 29 LDVPRGEILAIL--GGSGSGKSTLLRLILGLLRPDKG-EILIDGEDIPQL 75 (263)
T ss_pred eeecCCcEEEEE--CCCCcCHHHHHHHHhccCCCCCC-eEEEcCcchhcc
Confidence 445789888777 7999999987 345566777 489999998653
No 94
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.08 E-value=4.1 Score=36.03 Aligned_cols=40 Identities=30% Similarity=0.323 Sum_probs=26.4
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. .|||+|||+|+-+. ++..| +|..=|.|+
T Consensus 21 ~~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~ 64 (213)
T cd03259 21 LTVEPGEFLALL--GPSGCGKTTLLRLIAGLERPDSG-EILIDGRDV 64 (213)
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEc
Confidence 344568887777 89999999986422 44445 355555555
No 95
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=67.03 E-value=3.6 Score=36.45 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=23.8
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEec
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVG 316 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VG 316 (325)
+=+.|+..-+. .|||||||+|..+. |+..| +|.+=|
T Consensus 27 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g 66 (218)
T cd03266 27 TVKPGEVTGLL--GPNGAGKTTTLRMLAGLLEPDAG-FATVDG 66 (218)
T ss_pred EEcCCcEEEEE--CCCCCCHHHHHHHHhCCcCCCCc-eEEECC
Confidence 33568777777 89999999997643 44455 344433
No 96
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=67.01 E-value=4 Score=36.76 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=26.4
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+=+.|+..-+. -|||||||+|+-+ .++..| +|.+=|.||
T Consensus 31 ~i~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i 73 (233)
T PRK11629 31 SIGEGEMMAIV--GSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPM 73 (233)
T ss_pred EEcCCcEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEEc
Confidence 33568877777 8999999998742 255566 355555555
No 97
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=66.99 E-value=4.2 Score=35.95 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=25.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. .|||||||+|+-+. ++..| +|..=|.||.
T Consensus 26 ~~G~~~~l~--G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~ 67 (214)
T TIGR02673 26 RKGEFLFLT--GPSGAGKTTLLKLLYGALTPSRG-QVRIAGEDVN 67 (214)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcc
Confidence 468877777 89999999997532 44455 4665555553
No 98
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=66.97 E-value=4.2 Score=36.34 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=24.5
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVP 318 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDD 318 (325)
+.|+..-|. .|||||||+|+-+ .|+..|- |..=|-+
T Consensus 38 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~ 77 (226)
T cd03248 38 HPGEVTALV--GPSGSGKSTVVALLENFYQPQGGQ-VLLDGKP 77 (226)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcCcCCCCcE-EEECCCc
Confidence 568888888 8999999998643 2455562 4444433
No 99
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=66.96 E-value=3.7 Score=33.36 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.0
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+..-|. -|+|||||+|.=
T Consensus 9 ~~g~~~~i~--G~nGsGKStLl~ 29 (137)
T PF00005_consen 9 KPGEIVAIV--GPNGSGKSTLLK 29 (137)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred cCCCEEEEE--ccCCCcccccee
Confidence 468887777 799999999853
No 100
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=66.81 E-value=6.8 Score=39.04 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. -|||||||+|.- +.++..|- |.+=|.+|.
T Consensus 43 ~~Ge~~~ll--GpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~ 84 (377)
T PRK11607 43 YKGEIFALL--GASGCGKSTLLRMLAGFEQPTAGQ-IMLDGVDLS 84 (377)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCceE-EEECCEECC
Confidence 357654444 899999999843 33555563 666566654
No 101
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=66.71 E-value=3.8 Score=42.02 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=27.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=|.|+++-|+ .|||||||+|+-|. |+ .| +|..=|-||.
T Consensus 371 l~i~~G~~vaIv--G~SGsGKSTL~~lL~g~~p~-~G-~I~i~g~~i~ 414 (588)
T PRK11174 371 FTLPAGQRIALV--GPSGAGKTSLLNALLGFLPY-QG-SLKINGIELR 414 (588)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCC-Cc-EEEECCEecc
Confidence 445679998888 89999999998643 32 45 4555554543
No 102
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=66.61 E-value=5.3 Score=35.96 Aligned_cols=39 Identities=26% Similarity=0.167 Sum_probs=26.8
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+=+.|+..-+. -|||||||+|+-+. ++..| +|.+=|.|+
T Consensus 24 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 66 (237)
T cd03252 24 RIKPGEVVGIV--GRSGSGKSTLTKLIQRFYVPENG-RVLVDGHDL 66 (237)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhcCcCCCCC-EEEECCeeh
Confidence 33568888777 79999999996532 44556 455556554
No 103
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=66.59 E-value=4.4 Score=35.01 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=17.3
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+..-+. .|||||||+|+-
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (166)
T cd03223 25 KPGDRLLIT--GPSGTGKSSLFR 45 (166)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 458887777 899999999954
No 104
>KOG0733|consensus
Probab=66.52 E-value=3.6 Score=44.79 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=22.9
Q ss_pred hhhhhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 271 HMLILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 271 HMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
-.+=+||..|.|--.| -|.|||||.||=.
T Consensus 214 ~~~~lGv~PprGvLlH----GPPGCGKT~lA~A 242 (802)
T KOG0733|consen 214 VFSSLGVRPPRGVLLH----GPPGCGKTSLANA 242 (802)
T ss_pred hHhhcCCCCCCceeee----CCCCccHHHHHHH
Confidence 3445899999996655 8999999999853
No 105
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=66.46 E-value=4.3 Score=36.34 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
.+|+..-+. -|||||||+|+-+. ++..| +|.+=|.|+
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 64 (230)
T TIGR03410 24 PKGEVTCVL--GRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDI 64 (230)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEC
Confidence 468888887 79999999986432 44556 355555554
No 106
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.23 E-value=4.4 Score=35.01 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=24.7
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+=+.|+..-|+ .|||||||+|.-+ .|+..| +|.+=|.++
T Consensus 22 ~i~~Ge~~~i~--G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~ 64 (173)
T cd03230 22 TVEKGEIYGLL--GPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDI 64 (173)
T ss_pred EEcCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEc
Confidence 33568777777 8999999998643 244455 344444443
No 107
>PRK06620 hypothetical protein; Validated
Probab=66.10 E-value=4.4 Score=37.12 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=18.9
Q ss_pred CCCCceEEEEeecCCccChhhhccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+|..+..|+. -|+|||||.|+.+
T Consensus 41 ~~~~~~l~l~--Gp~G~GKThLl~a 63 (214)
T PRK06620 41 NPYKFTLLIK--GPSSSGKTYLTKI 63 (214)
T ss_pred CCCcceEEEE--CCCCCCHHHHHHH
Confidence 5644578998 7999999999875
No 108
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=66.09 E-value=7.3 Score=38.08 Aligned_cols=40 Identities=28% Similarity=0.164 Sum_probs=27.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. .|||||||+|.- +.++..|. |..=|.|+
T Consensus 18 l~i~~Gei~~l~--G~nGsGKSTLl~~iaGl~~p~~G~-I~~~g~~i 61 (354)
T TIGR02142 18 FTLPGQGVTAIF--GRSGSGKTTLIRLIAGLTRPDEGE-IVLNGRTL 61 (354)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEEC
Confidence 333568877777 899999999964 33555674 55556555
No 109
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=66.07 E-value=1.8 Score=38.34 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=22.7
Q ss_pred CceEEEEeecCCccChhhhcccCCCCCCceEEEecccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDI 319 (325)
|+=.-|+ -|||+|||.||.-. -..|+ ..|+||.
T Consensus 14 g~gvLi~--G~sG~GKStlal~L-~~~g~--~lvaDD~ 46 (149)
T cd01918 14 GIGVLIT--GPSGIGKSELALEL-IKRGH--RLVADDR 46 (149)
T ss_pred CEEEEEE--cCCCCCHHHHHHHH-HHcCC--eEEECCE
Confidence 4445555 79999999998521 01466 7999995
No 110
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=66.06 E-value=4.3 Score=36.41 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=26.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|.-+. |+..| +|..=|.++
T Consensus 21 l~i~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 64 (236)
T cd03219 21 FSVRPGEIHGLI--GPNGAGKTTLFNLISGFLRPTSG-SVLFDGEDI 64 (236)
T ss_pred EEecCCcEEEEE--CCCCCCHHHHHHHHcCCCCCCCc-eEEECCEEC
Confidence 333468776666 89999999997533 45567 355555554
No 111
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=65.96 E-value=4.5 Score=35.59 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=25.2
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|.-+. ++..|. |..=|.++
T Consensus 24 ~~G~~~~l~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~ 64 (213)
T cd03262 24 KKGEVVVII--GPSGSGKSTLLRCINLLEEPDSGT-IIIDGLKL 64 (213)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCce-EEECCEEC
Confidence 458877777 89999999986432 455674 55555454
No 112
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.92 E-value=4.4 Score=36.64 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=26.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|+-+. ++..| +|..=|.++
T Consensus 23 ~~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 66 (239)
T cd03296 23 LDIPSGELVALL--GPSGSGKTTLLRLIAGLERPDSG-TILFGGEDA 66 (239)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 333568887777 89999999986532 44456 355545454
No 113
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=65.33 E-value=4.7 Score=36.34 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=12.8
Q ss_pred CCceEEEEeecCCccChhhh
Q psy13078 281 EGQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnl 300 (325)
.|...=|. -|+|||||||
T Consensus 22 ~~~~~~i~--GpNGsGKStl 39 (243)
T cd03272 22 SPKHNVVV--GRNGSGKSNF 39 (243)
T ss_pred CCCcEEEE--CCCCCCHHHH
Confidence 34444444 7999999999
No 114
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.11 E-value=10 Score=31.77 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=34.5
Q ss_pred eccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc
Q psy13078 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV 75 (325)
Q Consensus 23 ~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L 75 (325)
+-+|+--||.|++|++. || ++||.-.|++-|+++|++.+=
T Consensus 27 ~~~~~gy~PtV~D~L~r------------Cd-T~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 27 KIDFSGYNPTVIDFLRR------------CD-TEEEALEIINYLEKRGEITPE 66 (98)
T ss_pred cCCcCCCCchHHHHHHH------------hC-cHHHHHHHHHHHHHhCCCCHH
Confidence 45788899999999875 44 899999999999999998873
No 115
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=65.10 E-value=4.7 Score=34.73 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=26.3
Q ss_pred CCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
=+.|+..-+. .|||||||+|.-+. |+..| +|..=|.++.
T Consensus 23 i~~Ge~~~l~--G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~ 65 (163)
T cd03216 23 VRRGEVHALL--GENGAGKSTLMKILSGLYKPDSG-EILVDGKEVS 65 (163)
T ss_pred EeCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECC
Confidence 3468877777 89999999997543 44455 3665555553
No 116
>PLN02318 phosphoribulokinase/uridine kinase
Probab=65.05 E-value=4.5 Score=43.80 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=18.2
Q ss_pred ceEEEEeecCCccChhhhcccC
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+..-|+-|.|||||||+||-..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~L 85 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKV 85 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHH
Confidence 4678888999999999998643
No 117
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=64.80 E-value=65 Score=31.18 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHH----hh---cCCC-eEEEEcCCHHHHHHHHHHHHhcCcc----cccCCCCCcEEeccCCCcccccccc
Q psy13078 30 SPKLKSFIDNCV----EL---CQPS-DVHICDGSEREYKELIDLMVKDKTL----RPVPKYENCWLARTNPADVARVESK 97 (325)
Q Consensus 30 ~~~v~~~V~e~a----~L---~~P~-~I~icdGS~eE~~~l~~~l~~~G~~----~~L~~~~n~~l~rsdp~DvARve~r 97 (325)
.+++++.|++.. .+ ++|+ .|.+.+|+.+=...+.+.+++.|.. .+-+-| ......++....
T Consensus 66 ~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y-------~~~~~~~~~~g~ 138 (393)
T TIGR03538 66 LPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFY-------QIYEGAALLAGA 138 (393)
T ss_pred CHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCC-------cchHHHHHhcCC
Confidence 356666666655 21 6885 8999999999999999999888853 222222 222334554444
Q ss_pred eEEEcCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc-------------c
Q psy13078 98 TFICTQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK-------------I 163 (325)
Q Consensus 98 TfI~t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~-------------~ 163 (325)
..+-.+-.++ +.| .+.+++.+.+.+ +-.+++++.---|.|..++. -
T Consensus 139 ~~~~v~~~~~-------------~~~~~d~~~l~~~~~~-------~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~ 198 (393)
T TIGR03538 139 EPYFLNCTAE-------------NGFLPDFDAVPESVWR-------RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYG 198 (393)
T ss_pred eEEEeecccc-------------CCCCCCHHHHHHHHhh-------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCC
Confidence 4433322211 134 467777776653 22455556667788887763 1
Q ss_pred eeeccCchhHHh
Q psy13078 164 GVEITDSPYVVG 175 (325)
Q Consensus 164 GVqlTDS~YVv~ 175 (325)
-+=|-|..|.-.
T Consensus 199 ~~ii~De~Y~~~ 210 (393)
T TIGR03538 199 FIIASDECYSEL 210 (393)
T ss_pred EEEEECcchhhc
Confidence 245667777644
No 118
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=64.77 E-value=4.8 Score=36.73 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=26.1
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. .|||||||+|.-+. ++..| +|..=|.+|.
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~ 65 (252)
T TIGR03005 24 AAGEKVALI--GPSGSGKSTILRILMTLEPIDEG-QIQVEGEQLY 65 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcc
Confidence 468887777 89999999997533 33445 3666565553
No 119
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=64.71 E-value=3.5 Score=32.91 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=11.7
Q ss_pred eEEEEeecCCccChhhhcc
Q psy13078 284 KKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAM 302 (325)
-.+|. .|+|||||.++.
T Consensus 6 ~~~i~--G~~G~GKT~~~~ 22 (131)
T PF13401_consen 6 ILVIS--GPPGSGKTTLIK 22 (131)
T ss_dssp -EEEE--E-TTSSHHHHHH
T ss_pred ccEEE--cCCCCCHHHHHH
Confidence 34555 799999999874
No 120
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.63 E-value=4.8 Score=36.74 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.0
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+.+-|. .|||||||+|+=+
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~~ 51 (253)
T PRK14261 30 PKNRVTALI--GPSGCGKSTLLRC 51 (253)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 568887777 8999999999743
No 121
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=64.60 E-value=5.1 Score=34.86 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=25.4
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
.+|+..-+. .|||||||+|.-+ .++..| +|.+=|.|+.
T Consensus 23 ~~G~~~~l~--G~nGsGKStLl~~i~G~~~~~~G-~v~~~g~~~~ 64 (180)
T cd03214 23 EAGEIVGIL--GPNGAGKSTLLKTLAGLLKPSSG-EILLDGKDLA 64 (180)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECC
Confidence 458888887 8999999998542 244455 4555555553
No 122
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=64.57 E-value=4.9 Score=36.55 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=28.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCC----CceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLP----GYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~p----Gwkv~~VGDDIA 320 (325)
++=+.|+..-+. -|||||||+|+-+. ++.| .-+|..=|.|+.
T Consensus 22 ~~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 22 LDIPKNQVTALI--GPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcc
Confidence 333568888787 89999999987422 3321 445777677664
No 123
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=64.55 E-value=4.5 Score=39.42 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=30.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA~ 321 (325)
++=.+|+..-+. +.||||||+||= |.++..| +|.+=|.||..
T Consensus 34 f~i~~ge~~glV--GESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~ 79 (268)
T COG4608 34 FSIKEGETLGLV--GESGCGKSTLGRLILGLEEPTSG-EILFEGKDITK 79 (268)
T ss_pred EEEcCCCEEEEE--ecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhh
Confidence 444679888888 899999999985 3344455 47777777643
No 124
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=64.32 E-value=3.8 Score=38.61 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=17.8
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|..+=|+ -|||||||.|||
T Consensus 36 ~~g~itEi~--G~~gsGKTql~l 56 (256)
T PF08423_consen 36 PTGSITEIV--GESGSGKTQLCL 56 (256)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--EecccccchHHH
Confidence 348888888 689999999987
No 125
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=64.30 E-value=4.9 Score=37.18 Aligned_cols=37 Identities=35% Similarity=0.501 Sum_probs=24.8
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. -|||||||+|+-+. ++..| +|..=|-|+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 65 (255)
T PRK11248 25 ESGELLVVL--GPSGCGKTTLLNLIAGFVPYQHG-SITLDGKPV 65 (255)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEC
Confidence 468887777 79999999986532 34445 455545454
No 126
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=64.19 E-value=4.8 Score=39.65 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=26.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
++=+.|+..-+. .|||||||+|.= +.++..| +|.+=|.||.
T Consensus 27 l~i~~Ge~~~ll--GpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~ 71 (351)
T PRK11432 27 LTIKQGTMVTLL--GPSGCGKTTVLRLVAGLEKPTEG-QIFIDGEDVT 71 (351)
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHHCCCCCCce-EEEECCEECC
Confidence 333457765555 799999999853 3355556 3666666654
No 127
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=63.85 E-value=4.6 Score=36.95 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=23.1
Q ss_pred CCCceEEEEeecCCccChhhhcc--cC-CCCCCceEEEe
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM--LN-PTLPGYKVECV 315 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM--l~-p~~pGwkv~~V 315 (325)
|.|..+-|+ -|+|||||.||+ +. -...|-++-.|
T Consensus 19 ~~gs~~lI~--G~pGsGKT~la~~~l~~~~~~ge~~lyv 55 (237)
T TIGR03877 19 PERNVVLLS--GGPGTGKSIFSQQFLWNGLQMGEPGIYV 55 (237)
T ss_pred cCCeEEEEE--cCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 568777777 699999999997 22 22346555444
No 128
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.73 E-value=5.2 Score=35.83 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=27.1
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+=+.|+..-+. .|+|||||+|+-+. |+..| +|..=|.++.
T Consensus 24 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~ 67 (234)
T cd03251 24 DIPAGETVALV--GPSGSGKSTLVNLIPRFYDVDSG-RILIDGHDVR 67 (234)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhccccCCCC-EEEECCEEhh
Confidence 33568888787 89999999997432 44556 3665565543
No 129
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=63.32 E-value=5.4 Score=38.39 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=27.5
Q ss_pred CCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA~ 321 (325)
=.+|++.=|. -|||||||+|-- |.++-.| .+.+-|+++..
T Consensus 25 v~~Gevv~ii--GpSGSGKSTlLRclN~LE~~~~G-~I~i~g~~~~~ 68 (240)
T COG1126 25 VEKGEVVVII--GPSGSGKSTLLRCLNGLEEPDSG-SITVDGEDVGD 68 (240)
T ss_pred EcCCCEEEEE--CCCCCCHHHHHHHHHCCcCCCCc-eEEECCEeccc
Confidence 3469998888 599999998742 4444455 46666766643
No 130
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=63.29 E-value=5.2 Score=37.37 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=17.3
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+.+-+. -|||||||+|.=
T Consensus 36 ~~Ge~~~I~--G~NGsGKSTLlk 56 (257)
T PRK11247 36 PAGQFVAVV--GRSGCGKSTLLR 56 (257)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468887777 799999999864
No 131
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.12 E-value=5.6 Score=33.56 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=19.4
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=++|+...|+ .|+|+|||+|.-+
T Consensus 20 ~~i~~g~~~~i~--G~nGsGKStll~~ 44 (157)
T cd00267 20 LTLKAGEIVALV--GPNGSGKSTLLRA 44 (157)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 344568888787 8999999998654
No 132
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.09 E-value=5.6 Score=34.28 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=26.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|+|||||+|.= +.|+..| +|..=|.++
T Consensus 23 ~~i~~G~~~~l~--G~nGsGKstLl~~i~G~~~~~~G-~i~~~g~~~ 66 (171)
T cd03228 23 LTIKPGEKVAIV--GPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDL 66 (171)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEh
Confidence 344568888777 899999999852 2244555 355555554
No 133
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=63.07 E-value=4 Score=39.88 Aligned_cols=38 Identities=16% Similarity=-0.011 Sum_probs=27.0
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---CCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VGDDI 319 (325)
++|+..-+.| |+|+|||+|+.-.- ...|++|-.++-|.
T Consensus 112 ~~~~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 3466666664 99999998764221 12589999999886
No 134
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=63.05 E-value=5.7 Score=35.79 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=26.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+..-|+ .|||||||+|.-+ .++..| +|..=|.++
T Consensus 28 ~~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 71 (225)
T PRK10247 28 FSLRAGEFKLIT--GPSGCGKSTLLKIVASLISPTSG-TLLFEGEDI 71 (225)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcccCCCCC-eEEECCEEc
Confidence 334568888777 8999999998642 245556 354444444
No 135
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.96 E-value=5.4 Score=35.48 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCceEEEEeecCCccChhhhccc-C---C---CCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML-N---P---TLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl-~---p---~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. -|||||||+|+=+ . + +..| .|++-|.|+.
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~~~~G-~i~i~g~~~~ 75 (202)
T cd03233 31 KPGEMVLVL--GRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYK 75 (202)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHHhcccCCCCCCcce-EEEECCEECc
Confidence 457766666 8999999998632 2 3 3345 3555555543
No 136
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=62.92 E-value=5.5 Score=35.40 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=23.9
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++|+..=+. -|||||||+|.=+ .++..| +|..=|.|+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 66 (207)
T PRK13539 26 AAGEALVLT--GPNGSGKTTLLRLIAGLLPPAAG-TIKLDGGDI 66 (207)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeC
Confidence 458777777 7999999998642 244455 355445443
No 137
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=62.91 E-value=5.7 Score=34.31 Aligned_cols=39 Identities=31% Similarity=0.305 Sum_probs=25.4
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. .|||||||+|.-+ .++..|- |.+=|.++
T Consensus 24 ~i~~Ge~~~i~--G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~ 66 (173)
T cd03246 24 SIEPGESLAII--GPSGSGKSTLARLILGLLRPTSGR-VRLDGADI 66 (173)
T ss_pred EECCCCEEEEE--CCCCCCHHHHHHHHHhccCCCCCe-EEECCEEc
Confidence 33568877777 8999999998653 2455563 44444444
No 138
>PRK08068 transaminase; Reviewed
Probab=62.81 E-value=39 Score=32.66 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHH----hh-cCCC-eEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEEE
Q psy13078 30 SPKLKSFIDNCV----EL-CQPS-DVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFIC 101 (325)
Q Consensus 30 ~~~v~~~V~e~a----~L-~~P~-~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~ 101 (325)
.+++++.|++.. .+ ++|+ +|.+.+|+.+....+...+++.|..+-+. .|+ .....++...-+++-
T Consensus 72 ~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~-------~~~~~~~~~g~~~~~ 144 (389)
T PRK08068 72 YPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYP-------DYLSGVALARAQFET 144 (389)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCc-------chHHHHHhcCCEEEE
Confidence 456666666665 23 7898 89999999999988888888877533332 332 223334333333332
Q ss_pred cCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc-------------ceeec
Q psy13078 102 TQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK-------------IGVEI 167 (325)
Q Consensus 102 t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~-------------~GVql 167 (325)
.+-.++ .+| ++.+++.+.+.+. =|-+|+. .---|.|.-+++ -.+=|
T Consensus 145 i~~~~~-------------~~~~~d~~~l~~~~~~~------~~~v~l~-~P~NPTG~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 145 MPLIAE-------------NNFLPDYTKIPEEVAEK------AKLMYLN-YPNNPTGAVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred eecccc-------------cCCCCCHHHHHHhcccc------ceEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 221111 023 4667777666432 2556665 224788887775 23456
Q ss_pred cCchhH
Q psy13078 168 TDSPYV 173 (325)
Q Consensus 168 TDS~YV 173 (325)
-|..|-
T Consensus 205 ~Deay~ 210 (389)
T PRK08068 205 HDFAYG 210 (389)
T ss_pred Eehhhh
Confidence 677774
No 139
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=62.77 E-value=5.1 Score=39.95 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=23.7
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. -|||||||+|.-+ .++..|- |.+=|.|+
T Consensus 38 ~~Ge~~~Ll--GpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i 78 (375)
T PRK09452 38 NNGEFLTLL--GPSGCGKTTVLRLIAGFETPDSGR-IMLDGQDI 78 (375)
T ss_pred eCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCceE-EEECCEEC
Confidence 457766666 7999999998543 2444454 55555554
No 140
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=62.73 E-value=4.4 Score=39.45 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=19.3
Q ss_pred hhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 274 ILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 274 Ilgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
-+|+..|.| +.---|+|||||.||-.
T Consensus 150 ~~g~~~p~g----vLL~GppGtGKT~laka 175 (364)
T TIGR01242 150 EVGIEPPKG----VLLYGPPGTGKTLLAKA 175 (364)
T ss_pred hcCCCCCce----EEEECCCCCCHHHHHHH
Confidence 367888877 33338999999999853
No 141
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=62.72 E-value=5.5 Score=35.63 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=24.5
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
..|+..-+. .|||||||+|.-+. ++..| +|..=|.++
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 64 (232)
T cd03218 24 KQGEIVGLL--GPNGAGKTTTFYMIVGLVKPDSG-KILLDGQDI 64 (232)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEec
Confidence 458777777 89999999996432 33444 355555554
No 142
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.70 E-value=4.9 Score=35.82 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=25.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
.+|+.+-+. .|||||||+|.-+. ++..|. |..=|.++
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~ 64 (220)
T cd03265 24 RRGEIFGLL--GPNGAGKTTTIKMLTTLLKPTSGR-ATVAGHDV 64 (220)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEec
Confidence 458887777 79999999997543 455664 55556554
No 143
>PRK10908 cell division protein FtsE; Provisional
Probab=62.66 E-value=5.6 Score=35.48 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=27.1
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
..|+.+-+. .|||||||+|.=+ .|+..|. |.+-|.||+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~ 67 (222)
T PRK10908 26 RPGEMAFLT--GHSGAGKSTLLKLICGIERPSAGK-IWFSGHDIT 67 (222)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcc
Confidence 468888888 8999999998642 2555674 666666654
No 144
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=62.55 E-value=5.1 Score=42.15 Aligned_cols=40 Identities=28% Similarity=0.238 Sum_probs=26.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|++.-|+ -|||||||+|+-+. ++..| +|..=|-||
T Consensus 474 l~i~~Ge~vaIv--G~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i 517 (686)
T TIGR03797 474 LQIEPGEFVAIV--GPSGSGKSTLLRLLLGFETPESG-SVFYDGQDL 517 (686)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEc
Confidence 445679988888 79999999997643 33344 344444444
No 145
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=62.50 E-value=5.6 Score=35.30 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+..-+. .|||||||+|.-+. ++..|- |.+=|.|+
T Consensus 29 ~~G~~~~i~--G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~ 69 (221)
T TIGR02211 29 GKGEIVAIV--GSSGSGKSTLLHLLGGLDNPTSGE-VLFNGQSL 69 (221)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEh
Confidence 458877676 89999999997532 444553 44334343
No 146
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=62.35 E-value=5.7 Score=34.89 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=24.6
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|+|||||.|+=+ .++..| +|.+=|-+|
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i 64 (195)
T PRK13541 24 LPSAITYIK--GANGCGKSSLLRMIAGIMQPSSG-NIYYKNCNI 64 (195)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCccc
Confidence 458877777 8999999999732 244556 355555444
No 147
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=62.18 E-value=5.6 Score=36.63 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=18.2
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+.+-+. .|||||||+|+-+
T Consensus 37 ~~Ge~~~i~--G~nGsGKSTLl~~ 58 (260)
T PRK10744 37 AKNQVTAFI--GPSGCGKSTLLRT 58 (260)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 8999999999653
No 148
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=62.11 E-value=51 Score=31.80 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHh-----hcCCC-eEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEE
Q psy13078 30 SPKLKSFIDNCVE-----LCQPS-DVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFIC 101 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L~~P~-~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~ 101 (325)
.+++++.|++... -++|+ .|.+..||++-...+...+++.|..+-+ +.|++ ...+++.-....+-
T Consensus 70 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~-------~~~~~~~~g~~~~~ 142 (388)
T PRK07366 70 TLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPS-------HAGGVYLAGGQIYP 142 (388)
T ss_pred CHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcc-------hHHHHHhcCCEEEE
Confidence 4567777777653 27898 6999999999999998888888854333 23333 23444444444433
Q ss_pred cCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc
Q psy13078 102 TQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK 162 (325)
Q Consensus 102 t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~ 162 (325)
.+-..+ +.| .+.+++.+.+.+. -|-.|+.+ --=|.|.-++.
T Consensus 143 v~~~~~-------------~~~~~d~~~l~~~~~~~------~k~i~l~~-p~NPTG~~~s~ 184 (388)
T PRK07366 143 MPLRAE-------------NDFLPVFADIPTEVLAQ------ARLMVLSY-PHNPTTAIAPL 184 (388)
T ss_pred EECCCc-------------cCCCCCHHHHHHhhccc------ceEEEEeC-CCCCCCccCCH
Confidence 322111 134 3445555544321 24344444 45888887764
No 149
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=62.10 E-value=5.1 Score=34.45 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=16.4
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|....|+ -|+++|||.+++
T Consensus 30 ~~g~l~~i~--g~~g~GKT~~~~ 50 (193)
T PF13481_consen 30 PRGELTLIA--GPPGSGKTTLAL 50 (193)
T ss_dssp -TTSEEEEE--ECSTSSHHHHHH
T ss_pred cCCeEEEEE--eCCCCCHHHHHH
Confidence 357777777 689999999865
No 150
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=62.09 E-value=6.5 Score=40.83 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=26.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+++-|. .|||||||+|+-+. ++..| +|..=|.|+
T Consensus 356 ~~i~~G~~~~iv--G~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~ 399 (585)
T TIGR01192 356 FEAKAGQTVAIV--GPTGAGKTTLINLLQRVYDPTVG-QILIDGIDI 399 (585)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHccCCCCCCC-EEEECCEEh
Confidence 334569888888 79999999987654 44444 354444443
No 151
>PRK04328 hypothetical protein; Provisional
Probab=62.04 E-value=5.2 Score=37.17 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.5
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|..+.|+ .|+|||||.||+
T Consensus 21 p~gs~ili~--G~pGsGKT~l~~ 41 (249)
T PRK04328 21 PERNVVLLS--GGPGTGKSIFSQ 41 (249)
T ss_pred cCCcEEEEE--cCCCCCHHHHHH
Confidence 778888888 599999999987
No 152
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=62.02 E-value=5.6 Score=37.04 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=24.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|.-+. ++..|- |..=|.+|
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i 71 (280)
T PRK13649 31 EDGSYTAFI--GHTGSGKSTIMQLLNGLHVPTQGS-VRVDDTLI 71 (280)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEEc
Confidence 468887777 89999999996432 444453 44434343
No 153
>PLN02796 D-glycerate 3-kinase
Probab=62.01 E-value=5.1 Score=40.23 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=16.8
Q ss_pred eEEEEeecCCccChhhhccc
Q psy13078 284 KKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl 303 (325)
...|+-+-|||||||+|+..
T Consensus 100 pliIGI~G~sGSGKSTLa~~ 119 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFA 119 (347)
T ss_pred CEEEEEECCCCCcHHHHHHH
Confidence 46788889999999999763
No 154
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=61.92 E-value=5.5 Score=33.44 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=11.3
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
++..+|. .|+|||||.|..
T Consensus 24 ~~~~ll~--G~~G~GKT~ll~ 42 (185)
T PF13191_consen 24 PRNLLLT--GESGSGKTSLLR 42 (185)
T ss_dssp ---EEE---B-TTSSHHHHHH
T ss_pred CcEEEEE--CCCCCCHHHHHH
Confidence 4455555 899999999854
No 155
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.87 E-value=5.8 Score=36.44 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=19.5
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+=+.|+.+-+. -|||||||+|+-+.
T Consensus 34 ~i~~Ge~~~l~--G~nGsGKSTLl~~l 58 (259)
T PRK14274 34 SIPENEVTAII--GPSGCGKSTFIKTL 58 (259)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 33568887777 89999999998653
No 156
>PLN02231 alanine transaminase
Probab=61.77 E-value=36 Score=35.53 Aligned_cols=124 Identities=20% Similarity=0.371 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHhh-----cCCCeEEEEcCCHHHHHHHHHHHHh-cC--cccccCCCCCcEEeccCCCcccccccceEEE
Q psy13078 30 SPKLKSFIDNCVEL-----CQPSDVHICDGSEREYKELIDLMVK-DK--TLRPVPKYENCWLARTNPADVARVESKTFIC 101 (325)
Q Consensus 30 ~~~v~~~V~e~a~L-----~~P~~I~icdGS~eE~~~l~~~l~~-~G--~~~~L~~~~n~~l~rsdp~DvARve~rTfI~ 101 (325)
.+++++.|++...- +.|++|++.+|+.+=...+.+.++. .| .+++-+.|++.. ..++.-..+.+-
T Consensus 170 ~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~-------~~~~~~g~~~v~ 242 (534)
T PLN02231 170 IKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYS-------ASIALHGGTLVP 242 (534)
T ss_pred cHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHH-------HHHHHcCCEEEE
Confidence 57788888877642 7899999999999999999998874 34 555655665442 222223333332
Q ss_pred cCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcc------------e-eec
Q psy13078 102 TQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKI------------G-VEI 167 (325)
Q Consensus 102 t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~------------G-Vql 167 (325)
.+-.++ ++| ++.+++++.+.+.-..-.+=|-+||+ ---=|.|.-++.= + +=|
T Consensus 243 ~~l~~~-------------~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI 308 (534)
T PLN02231 243 YYLDEA-------------TGWGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEENQRDIVEFCKQEGLVLL 308 (534)
T ss_pred EecCcc-------------cCCCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 221111 145 57888888876532211111334444 3355888887641 2 467
Q ss_pred cCchhHH
Q psy13078 168 TDSPYVV 174 (325)
Q Consensus 168 TDS~YVv 174 (325)
.|..|--
T Consensus 309 ~DEvY~~ 315 (534)
T PLN02231 309 ADEVYQE 315 (534)
T ss_pred EEccchh
Confidence 7888864
No 157
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=61.70 E-value=5.6 Score=39.22 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=25.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
++=+.|+.+-+. .|||||||+|.- +.++..|- |.+=|.||.
T Consensus 25 l~i~~Ge~~~ll--G~sGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~ 69 (356)
T PRK11650 25 LDVADGEFIVLV--GPSGCGKSTLLRMVAGLERITSGE-IWIGGRVVN 69 (356)
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHHCCCCCCceE-EEECCEECC
Confidence 344567755555 899999999854 33555563 555555553
No 158
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=61.66 E-value=5.7 Score=38.87 Aligned_cols=41 Identities=27% Similarity=0.201 Sum_probs=26.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
++=++|+..-+. .|||||||+|.- +.++..| +|..=|.|+.
T Consensus 19 l~i~~Ge~~~l~--G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~~~ 63 (352)
T PRK11144 19 LTLPAQGITAIF--GRSGAGKTSLINAISGLTRPQKG-RIVLNGRVLF 63 (352)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcc
Confidence 333568876666 799999999854 3345556 3555555543
No 159
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=61.61 E-value=5.9 Score=35.92 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=23.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+..-+. .|||||||+|+-+. ++..| +|..=|.++
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 67 (250)
T PRK11264 27 KPGEVVAII--GPSGSGKTTLLRCINLLEQPEAG-TIRVGDITI 67 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEc
Confidence 458887777 89999999987422 44445 354444444
No 160
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=61.46 E-value=6.2 Score=34.85 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|.-+. ++..|. |..=|-++
T Consensus 32 ~~G~~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~ 72 (207)
T cd03369 32 KAGEKIGIV--GRTGAGKSTLILALFRFLEAEEGK-IEIDGIDI 72 (207)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhcccCCCCCe-EEECCEEh
Confidence 468877776 89999999986533 445564 44444333
No 161
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=61.46 E-value=5.1 Score=30.05 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=16.7
Q ss_pred ecCCccChhhhccc-CCCCCCceEEEe
Q psy13078 290 AFPSACGKTNLAML-NPTLPGYKVECV 315 (325)
Q Consensus 290 AFPSaCGKTnlAMl-~p~~pGwkv~~V 315 (325)
.-|+|||||.+|=. ...+.|+++.++
T Consensus 5 ~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 5 TGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 47999999998742 233344555544
No 162
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=61.43 E-value=5.7 Score=35.50 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=16.5
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++|+..-+. -|||||||+|.=
T Consensus 23 ~~Ge~~~l~--G~nGsGKSTLl~ 43 (177)
T cd03222 23 KEGEVIGIV--GPNGTGKTTAVK 43 (177)
T ss_pred CCCCEEEEE--CCCCChHHHHHH
Confidence 458777676 899999999753
No 163
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=61.39 E-value=5.6 Score=40.72 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+++=|+ .|||||||+|+=
T Consensus 364 l~i~~G~~~aIv--G~sGsGKSTLl~ 387 (582)
T PRK11176 364 FKIPAGKTVALV--GRSGSGKSTIAN 387 (582)
T ss_pred EEeCCCCEEEEE--CCCCCCHHHHHH
Confidence 444679997777 899999999974
No 164
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=61.29 E-value=6 Score=35.92 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=24.3
Q ss_pred CCCceEEEEeecCCccChhhhcccC------CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN------PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~------p~~pGwkv~~VGDDI 319 (325)
..|+..-|+ .|||||||+|+=+. ++..| +|..=|.++
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~i~Gl~~~~~~~G-~i~~~g~~~ 73 (252)
T CHL00131 31 NKGEIHAIM--GPNGSGKSTLSKVIAGHPAYKILEG-DILFKGESI 73 (252)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHcCCCcCcCCCc-eEEECCEEc
Confidence 458888888 89999999986432 23345 355545444
No 165
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.28 E-value=6.3 Score=34.21 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=26.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=+.|+..-+. .|||||||+|+- +.++..| +|.+=|.++
T Consensus 21 ~~i~~G~~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 64 (178)
T cd03229 21 LNIEAGEIVALL--GPSGSGKSTLLRCIAGLEEPDSG-SILIDGEDL 64 (178)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEc
Confidence 444568887777 799999999863 2255556 355545444
No 166
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=61.25 E-value=6.1 Score=34.79 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=25.3
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+.+-+. .|||||||+|.-+. ++..| +|..=|.||.
T Consensus 25 ~~G~~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~ 66 (214)
T cd03292 25 SAGEFVFLV--GPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVS 66 (214)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcc
Confidence 458777777 89999999987422 44445 4665555553
No 167
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.17 E-value=5.9 Score=37.24 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=26.4
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCC--ceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPG--YKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pG--wkv~~VGDDI 319 (325)
++=+.|+..-|. .|||||||+|.-+. ++..| =+|..=|.++
T Consensus 28 l~i~~Ge~~~I~--G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 28 FSIPRGSWTALI--GHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 344568887777 89999999997532 33332 2565555554
No 168
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=61.05 E-value=6.3 Score=34.75 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=25.9
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
.+|+..-+. .|||||||+|.= +.++..|. |..=|.++.
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~ 66 (200)
T PRK13540 25 PAGGLLHLK--GSNGAGKTTLLKLIAGLLNPEKGE-ILFERQSIK 66 (200)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCee-EEECCCccc
Confidence 457777676 899999999753 33566773 666565553
No 169
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=61.04 E-value=5 Score=42.41 Aligned_cols=26 Identities=35% Similarity=0.245 Sum_probs=21.4
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++=+.|++.-|. -|||||||+|+-+.
T Consensus 495 l~i~~G~~vaIv--G~SGsGKSTLlklL 520 (708)
T TIGR01193 495 LTIKMNSKTTIV--GMSGSGKSTLAKLL 520 (708)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHH
Confidence 445679998888 79999999998754
No 170
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=60.93 E-value=6.4 Score=37.53 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.3
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.++=|.|+.+=|+ -+||||||+|+.
T Consensus 15 ~~~ip~g~~~~vt--GvSGsGKStL~~ 39 (261)
T cd03271 15 DVDIPLGVLTCVT--GVSGSGKSSLIN 39 (261)
T ss_pred eeeccCCcEEEEE--CCCCCchHHHHH
Confidence 4566999988888 799999999986
No 171
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.87 E-value=4.9 Score=41.19 Aligned_cols=42 Identities=36% Similarity=0.398 Sum_probs=31.7
Q ss_pred HHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 254 ALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 254 ALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
=+|=+..+--..--|=| =+||..|+|--.| -|.|+|||-||=
T Consensus 162 EirE~VELPL~~PElF~---~~GI~PPKGVLLY----GPPGTGKTLLAk 203 (406)
T COG1222 162 EIREVVELPLKNPELFE---ELGIDPPKGVLLY----GPPGTGKTLLAK 203 (406)
T ss_pred HHHHHhcccccCHHHHH---HcCCCCCCceEee----CCCCCcHHHHHH
Confidence 46666666655544444 4699999999999 899999998874
No 172
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=60.82 E-value=5.9 Score=35.80 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=24.8
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---CCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG 316 (325)
|.|..+.|+ -|+|+|||.||.-.- ...|-+|-.+.
T Consensus 23 ~~g~~~~i~--G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 23 PFPSLILIE--GDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred cCCcEEEEE--CCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 778888888 499999999886431 12466665554
No 173
>KOG0730|consensus
Probab=60.79 E-value=4.5 Score=43.95 Aligned_cols=61 Identities=31% Similarity=0.412 Sum_probs=38.7
Q ss_pred CCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 231 AANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 231 ~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
-.+--| +-+||+-=| |+ -|.-+....-+- .|-..=+||+-|+|--.| -|.|||||.+|=..
T Consensus 428 ~p~v~W---~dIGGlE~l-K~--elq~~V~~p~~~---pe~F~r~Gi~ppkGVLly----GPPGC~KT~lAkal 488 (693)
T KOG0730|consen 428 MPNVSW---DDIGGLEEL-KR--ELQQAVEWPLKH---PEKFARFGISPPKGVLLY----GPPGCGKTLLAKAL 488 (693)
T ss_pred CCCCCh---hhccCHHHH-HH--HHHHHHhhhhhc---hHHHHHhcCCCCceEEEE----CCCCcchHHHHHHH
Confidence 344455 467887654 32 344444433322 233445789999997777 89999999998543
No 174
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.75 E-value=6.4 Score=35.71 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=27.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
++=+.|+..-+. .|||||||+|.=+ .++..|. |..=|.++.
T Consensus 22 ~~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~ 66 (242)
T cd03295 22 LEIAKGEFLVLI--GPSGSGKTTTMKMINRLIEPTSGE-IFIDGEDIR 66 (242)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCce-EEECCeEcC
Confidence 333568887777 7999999998632 2455674 555565553
No 175
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.60 E-value=6.3 Score=35.85 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=26.7
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. -|||||||+|+-+. ++..| +|..=|.||.
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~ 68 (241)
T PRK14250 27 EGGAIYTIV--GPSGAGKSTLIKLINRLIDPTEG-SILIDGVDIK 68 (241)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhh
Confidence 458877777 89999999987532 44455 5766666654
No 176
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=60.60 E-value=5.2 Score=40.84 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=20.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=+.|++..|. .|||||||+|+-+
T Consensus 361 l~i~~Ge~i~Iv--G~sGsGKSTLlkl 385 (576)
T TIGR02204 361 LTVRPGETVALV--GPSGAGKSTLFQL 385 (576)
T ss_pred EEecCCCEEEEE--CCCCCCHHHHHHH
Confidence 444679998888 7999999998763
No 177
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=60.58 E-value=5.2 Score=40.69 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=20.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++=+.|++..|+ .|||||||+|+.+.
T Consensus 353 l~i~~G~~v~Iv--G~sGsGKSTLl~lL 378 (571)
T TIGR02203 353 LVIEPGETVALV--GRSGSGKSTLVNLI 378 (571)
T ss_pred EEecCCCEEEEE--CCCCCCHHHHHHHH
Confidence 344569999998 79999999997753
No 178
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.31 E-value=6.4 Score=35.95 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.1
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+.|+.+-+. .|||||||+|.
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl 50 (254)
T PRK14273 31 LKNSITALI--GPSGCGKSTFL 50 (254)
T ss_pred cCCCEEEEE--CCCCCCHHHHH
Confidence 468888888 89999999986
No 179
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.19 E-value=6.4 Score=35.90 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCCceEEEEeecCCccChhhhcccC----C--CC-C-CceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----P--TL-P-GYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p--~~-p-Gwkv~~VGDDIA 320 (325)
+.|+.+-|+ .|||||||+|+-+. + +. | .-+|.+=|-+|+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 28 PENSVTAII--GPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence 468887777 89999999997543 2 11 1 346777776664
No 180
>PRK09087 hypothetical protein; Validated
Probab=59.99 E-value=6.6 Score=36.24 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=16.8
Q ss_pred CceEEEEeecCCccChhhhcccC
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+...|+. -|||||||.|+.+.
T Consensus 44 ~~~l~l~--G~~GsGKThLl~~~ 64 (226)
T PRK09087 44 SPVVVLA--GPVGSGKTHLASIW 64 (226)
T ss_pred CCeEEEE--CCCCCCHHHHHHHH
Confidence 4457887 79999999998753
No 181
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.91 E-value=6.5 Score=36.62 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=18.2
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+.+-+. -|||||||+|+-+
T Consensus 37 ~~Ge~~~l~--G~nGsGKSTLl~~ 58 (269)
T PRK14259 37 PRGKVTALI--GPSGCGKSTVLRS 58 (269)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888888 7999999999753
No 182
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=59.88 E-value=6.7 Score=34.79 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=25.1
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+..-+. -|||||||+|.-+. ++..| +|.+=|.++
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 66 (220)
T cd03263 26 YKGEIFGLL--GHNGAGKTTTLKMLTGELRPTSG-TAYINGYSI 66 (220)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEec
Confidence 468777676 89999999997533 44556 355555554
No 183
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=59.75 E-value=6.2 Score=42.42 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=16.2
Q ss_pred CCceEEEEeecCCccChhhh
Q psy13078 281 EGQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnl 300 (325)
.|+..+|. -|||||||+|
T Consensus 418 ~G~~llI~--G~SG~GKTsL 435 (604)
T COG4178 418 PGERLLIT--GESGAGKTSL 435 (604)
T ss_pred CCCEEEEE--CCCCCCHHHH
Confidence 58888998 7999999997
No 184
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.60 E-value=6.6 Score=36.46 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=24.3
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
+.|+.+-|. .|||||||+|.= +.++..|- |.+=|.||
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i 65 (271)
T PRK13638 25 SLSPVTGLV--GANGCGKSTLFMNLSGLLRPQKGA-VLWQGKPL 65 (271)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHcCCCCCCccE-EEECCEEc
Confidence 458777777 899999999863 22555563 44444444
No 185
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.41 E-value=6.8 Score=36.47 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|.= +.++..|- |.+=|.||
T Consensus 33 ~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i 73 (271)
T PRK13632 33 NEGEYVAIL--GHNGSGKSTISKILTGLLKPQSGE-IKIDGITI 73 (271)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCce-EEECCEec
Confidence 468888888 899999999842 22445563 55545454
No 186
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=59.41 E-value=6.3 Score=40.61 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=19.3
Q ss_pred eCCCCceEEEEeecCCccChhhhccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+=+.|+++-|+ .|||||||+|+-+
T Consensus 357 ~i~~G~~v~Iv--G~sGsGKSTLl~l 380 (588)
T PRK13657 357 EAKPGQTVAIV--GPTGAGKSTLINL 380 (588)
T ss_pred EECCCCEEEEE--CCCCCCHHHHHHH
Confidence 33568888887 8999999999764
No 187
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=59.40 E-value=7.3 Score=33.02 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=16.9
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+..-+. .|||||||.|+=
T Consensus 24 ~~Ge~~~i~--G~nGsGKStLl~ 44 (144)
T cd03221 24 NPGDRIGLV--GRNGAGKSTLLK 44 (144)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 457777676 899999999873
No 188
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=59.37 E-value=5.6 Score=41.05 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=19.5
Q ss_pred eCCCCceEEEEeecCCccChhhhccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+=+.|+++-|. .|||||||+|+-+
T Consensus 337 ~i~~G~~~~iv--G~sGsGKSTLl~l 360 (569)
T PRK10789 337 TLKPGQMLGIC--GPTGSGKSTLLSL 360 (569)
T ss_pred EECCCCEEEEE--CCCCCCHHHHHHH
Confidence 33569888888 8999999998764
No 189
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=59.29 E-value=6.9 Score=35.35 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-++ -|||||||+|+-+. ++..|- |..=|.++.
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~ 66 (240)
T PRK09493 25 DQGEVVVII--GPSGSGKSTLLRCINKLEEITSGD-LIVDGLKVN 66 (240)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEECC
Confidence 458887777 89999999996532 445563 666565554
No 190
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.09 E-value=6 Score=36.69 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=27.3
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. .|||||||+|..+. ++..|. |.+=|-++
T Consensus 31 ~i~~Ge~~~I~--G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~ 73 (269)
T PRK13648 31 NIPKGQWTSIV--GHNGSGKSTIAKLMIGIEKVKSGE-IFYNNQAI 73 (269)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCceE-EEECCEEC
Confidence 33468888887 89999999997643 455673 66656555
No 191
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=58.96 E-value=6.4 Score=36.48 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=14.1
Q ss_pred EEEEeecCCccChhhhccc
Q psy13078 285 KYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl 303 (325)
..+.=.-|+|||||.+|-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4444458999999999943
No 192
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=58.86 E-value=46 Score=32.77 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHh--hcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEEcCCC
Q psy13078 30 SPKLKSFIDNCVE--LCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICTQEK 105 (325)
Q Consensus 30 ~~~v~~~V~e~a~--L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t~~~ 105 (325)
.+++++.+++... +-.|++|.+..|+.+=...+.+.+++.|..+-+ +-|++ ...+++.-....+-.+-.
T Consensus 123 ~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~-------~~~~~~~~g~~~~~v~~~ 195 (431)
T PRK15481 123 SPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLS-------SINMLRYAGFSASPVSVD 195 (431)
T ss_pred CHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHH-------HHHHHHHcCCeEEeeccC
Confidence 4678888887765 234679999999999999998888888854333 22322 234444444444443321
Q ss_pred CCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc------------c-e-eeccCch
Q psy13078 106 AETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK------------I-G-VEITDSP 171 (325)
Q Consensus 106 ~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~------------~-G-VqlTDS~ 171 (325)
++ | ++.+++++.+++ +=|-+|++|---=|.|.-++. . + +=|.|.+
T Consensus 196 ~~-------g--------~~~~~l~~~~~~------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~ 254 (431)
T PRK15481 196 AE-------G--------MQPEKLERALAQ------GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDH 254 (431)
T ss_pred CC-------C--------CCHHHHHHHHhc------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCc
Confidence 11 1 467777777654 236678888888999988874 1 3 4556777
Q ss_pred hHHh
Q psy13078 172 YVVG 175 (325)
Q Consensus 172 YVv~ 175 (325)
|--.
T Consensus 255 Y~~~ 258 (431)
T PRK15481 255 FALL 258 (431)
T ss_pred hhhh
Confidence 7644
No 193
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=58.54 E-value=7.1 Score=36.28 Aligned_cols=40 Identities=33% Similarity=0.304 Sum_probs=27.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+..-+. -|||||||+|.-+. ++..|. |.+=|.++
T Consensus 28 l~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i 71 (269)
T PRK11831 28 LTVPRGKITAIM--GPSGIGKTTLLRLIGGQIAPDHGE-ILFDGENI 71 (269)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCce-EEECCEEc
Confidence 444568888777 79999999997532 455664 55555454
No 194
>PRK05973 replicative DNA helicase; Provisional
Probab=58.39 E-value=6.5 Score=37.19 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=22.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC---CCCCCceEEEe
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN---PTLPGYKVECV 315 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~---p~~pGwkv~~V 315 (325)
|.|..+-|+ .++|+|||.||+-. -...|.+|-.+
T Consensus 62 ~~Gsl~LIa--G~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 62 KPGDLVLLG--ARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred CCCCEEEEE--eCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 557666666 68999999998832 12346666444
No 195
>KOG0727|consensus
Probab=58.35 E-value=5.8 Score=39.53 Aligned_cols=85 Identities=28% Similarity=0.395 Sum_probs=53.4
Q ss_pred ceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 223 RTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 223 ~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
..+-+.-|++.-=.||+-= ||=-+ .|- -+|=|.-+---.+-|-+ =+||..|.|.-.| -|.|||||-||=
T Consensus 139 ssi~ml~~~ekpdvsy~di-ggld~--qkq-eireavelplt~~~ly~---qigidpprgvlly----gppg~gktml~k 207 (408)
T KOG0727|consen 139 SSISMLGPDEKPDVSYADI-GGLDV--QKQ-EIREAVELPLTHADLYK---QIGIDPPRGVLLY----GPPGTGKTMLAK 207 (408)
T ss_pred ccccccCCCCCCCcccccc-ccchh--hHH-HHHHHHhccchHHHHHH---HhCCCCCcceEEe----CCCCCcHHHHHH
Confidence 3566667777777787654 66443 333 56777665544443333 4789999998888 799999997753
Q ss_pred cC--CCCCCceEEEecccc
Q psy13078 303 LN--PTLPGYKVECVGVPY 319 (325)
Q Consensus 303 l~--p~~pGwkv~~VGDDI 319 (325)
.. .|..-+ +++||.+.
T Consensus 208 ava~~t~a~f-irvvgsef 225 (408)
T KOG0727|consen 208 AVANHTTAAF-IRVVGSEF 225 (408)
T ss_pred HHhhccchhe-eeeccHHH
Confidence 22 222222 56666543
No 196
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=58.24 E-value=7.3 Score=35.46 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=17.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+.|+..-+. -|||||||+|.-+.
T Consensus 28 ~~Ge~~~l~--G~nGsGKSTLl~~l 50 (253)
T PRK14267 28 PQNGVFALM--GPSGCGKSTLLRTF 50 (253)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 458777676 89999999997643
No 197
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.20 E-value=8.4 Score=37.32 Aligned_cols=34 Identities=35% Similarity=0.421 Sum_probs=27.8
Q ss_pred eCCCCceEEEEeecCCccChhhhcccCCCCCCceEE
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVE 313 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~ 313 (325)
+=+.|+.+=+- -|.|+||++||...-=.|+|+|+
T Consensus 26 ~v~~GEvhaiM--GPNGsGKSTLa~~i~G~p~Y~Vt 59 (251)
T COG0396 26 TVKEGEVHAIM--GPNGSGKSTLAYTIMGHPKYEVT 59 (251)
T ss_pred eEcCCcEEEEE--CCCCCCHHHHHHHHhCCCCceEe
Confidence 34568887777 79999999999987777999875
No 198
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=58.11 E-value=6.4 Score=35.78 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=17.8
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+..-|. -|||||||+|+-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (250)
T PRK14262 27 FKNQITAII--GPSGCGKTTLLRS 48 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468887777 8999999999753
No 199
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=57.84 E-value=7.4 Score=36.22 Aligned_cols=40 Identities=25% Similarity=0.134 Sum_probs=25.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|.-+. |+..|- |.+=|.++
T Consensus 45 ~~i~~Ge~~~l~--G~nGsGKSTLl~~L~Gl~~p~~G~-i~i~g~~~ 88 (269)
T cd03294 45 LDVREGEIFVIM--GLSGSGKSTLLRCINRLIEPTSGK-VLIDGQDI 88 (269)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEc
Confidence 333568888777 89999999986532 444452 44434343
No 200
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=57.78 E-value=7.8 Score=34.57 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=22.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEE
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVEC 314 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~ 314 (325)
+.|+.+-+. .|||||||+|.-+. ++..|. |.+
T Consensus 32 ~~Ge~~~l~--G~nGsGKSTLl~~i~G~~~~~~G~-i~~ 67 (224)
T TIGR02324 32 NAGECVALS--GPSGAGKSTLLKSLYANYLPDSGR-ILV 67 (224)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCCe-EEE
Confidence 458777777 89999999987533 445574 444
No 201
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=57.53 E-value=5.6 Score=40.85 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=25.6
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcccCCC-CCCceEEEeccccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAMLNPT-LPGYKVECVGVPYK 320 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~-~pGwkv~~VGDDIA 320 (325)
+|+..|.|--.| -|+|||||.||-..-. +..--+++.|.++.
T Consensus 212 ~gi~~p~gVLL~----GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 212 IGIKPPKGVILY----GPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred cCCCCCcEEEEE----CCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 467778773333 8999999999853321 11222455665553
No 202
>PRK09183 transposase/IS protein; Provisional
Probab=57.48 E-value=6.7 Score=36.92 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=24.7
Q ss_pred CceEEEEeecCCccChhhhcccCC---CCCCceEEEec
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG 316 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG 316 (325)
|+..++. -|+|||||.||-..- ...|++|.++.
T Consensus 102 ~~~v~l~--Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 102 NENIVLL--GPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCeEEEE--eCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6677777 599999999987542 23689888765
No 203
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=57.48 E-value=7.1 Score=40.21 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=28.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+++-|. .|||||||+|+=+. +|..| +|.+=|-||.
T Consensus 362 l~i~~Ge~iaIv--G~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~ 406 (592)
T PRK10790 362 LSVPSRGFVALV--GHTGSGKSTLASLLMGYYPLTEG-EIRLDGRPLS 406 (592)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcccCCCCc-eEEECCEEhh
Confidence 455679998888 89999999987543 44556 5665555553
No 204
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=57.47 E-value=7.5 Score=38.31 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=25.0
Q ss_pred eCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
+=+.|+..=+. -|||||||+|.= +.++..|- |.+=|.|+.
T Consensus 26 ~i~~Ge~~~l~--GpsGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~ 69 (353)
T TIGR03265 26 SVKKGEFVCLL--GPSGCGKTTLLRIIAGLERQTAGT-IYQGGRDIT 69 (353)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHHCCCCCCceE-EEECCEECC
Confidence 33457765555 799999999843 23444563 666565553
No 205
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=57.40 E-value=7.4 Score=35.45 Aligned_cols=37 Identities=19% Similarity=0.019 Sum_probs=24.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEec
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVG 316 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VG 316 (325)
++=++|+.+-+. -|||||||+|.-+ .|+..|. |.+=|
T Consensus 24 l~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g 64 (253)
T TIGR02323 24 FDLYPGEVLGIV--GESGSGKSTLLGCLAGRLAPDHGT-ATYIM 64 (253)
T ss_pred EEEeCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCcE-EEEec
Confidence 344568777777 8999999998653 3555563 44433
No 206
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=57.33 E-value=7.7 Score=34.82 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=12.7
Q ss_pred EEEeecCCccChhhhcc
Q psy13078 286 YIAAAFPSACGKTNLAM 302 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAM 302 (325)
+++---|||||||||.-
T Consensus 24 ~~~i~G~nGsGKStll~ 40 (197)
T cd03278 24 LTAIVGPNGSGKSNIID 40 (197)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 33444899999999864
No 207
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=57.31 E-value=7.5 Score=35.40 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.1
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+.+-+. .|||||||+|.-
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~ 50 (253)
T PRK14242 30 EQNQVTALI--GPSGCGKSTFLR 50 (253)
T ss_pred eCCCEEEEE--CCCCCCHHHHHH
Confidence 458877777 899999999864
No 208
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=57.31 E-value=9.4 Score=29.35 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=15.9
Q ss_pred CCCCceEEEEeecCCccChhhh
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnl 300 (325)
+|.|..+.|+ -|+|+|||++
T Consensus 20 ~~~g~~tli~--G~nGsGKSTl 39 (62)
T PF13555_consen 20 DPRGDVTLIT--GPNGSGKSTL 39 (62)
T ss_pred cCCCcEEEEE--CCCCCCHHHH
Confidence 3456677777 7999999987
No 209
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=57.26 E-value=5.9 Score=39.95 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=18.1
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+|+..|.|-- + .-|+|||||.||-.
T Consensus 174 ~Gl~~pkgvL--L--~GppGTGKT~LAka 198 (398)
T PTZ00454 174 IGIDPPRGVL--L--YGPPGTGKTMLAKA 198 (398)
T ss_pred cCCCCCceEE--E--ECCCCCCHHHHHHH
Confidence 3677776633 3 38999999999854
No 210
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=57.18 E-value=7.7 Score=35.95 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=19.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-|. .|||||||+|+-
T Consensus 25 ~~i~~Ge~~~I~--G~NGsGKSTLl~ 48 (251)
T PRK09544 25 LELKPGKILTLL--GPNGAGKSTLVR 48 (251)
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHH
Confidence 333568888888 899999999974
No 211
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=57.13 E-value=7.2 Score=39.98 Aligned_cols=26 Identities=31% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++=|.|+++-+. .|||||||+|+-+.
T Consensus 344 ~~i~~G~~~aiv--G~sGsGKSTL~~ll 369 (547)
T PRK10522 344 LTIKRGELLFLI--GGNGSGKSTLAMLL 369 (547)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 444679888887 89999999998653
No 212
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=57.11 E-value=8.1 Score=34.30 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=25.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+..-+. .|||||||+|.-+. ++..|- |..=|.++
T Consensus 25 ~~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~ 68 (221)
T cd03244 25 FSIKPGEKVGIV--GRTGSGKSSLLLALFRLVELSSGS-ILIDGVDI 68 (221)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEh
Confidence 333568776666 89999999986432 445563 44444443
No 213
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=57.01 E-value=8.1 Score=36.80 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=28.2
Q ss_pred ceeCCCCceEEEEeecCCccChhhhc-----ccCCCCCCceEEEeccccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLA-----MLNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlA-----Ml~p~~pGwkv~~VGDDIA 320 (325)
.+.=|+|+-.|++ -|||.|||+|- +..|| .=+|.+-|-||.
T Consensus 22 s~~i~~Gef~fl~--GpSGAGKSTllkLi~~~e~pt--~G~i~~~~~dl~ 67 (223)
T COG2884 22 SFHIPKGEFVFLT--GPSGAGKSTLLKLIYGEERPT--RGKILVNGHDLS 67 (223)
T ss_pred eEeecCceEEEEE--CCCCCCHHHHHHHHHhhhcCC--CceEEECCeecc
Confidence 3455789999999 79999999873 23343 234566666654
No 214
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=56.83 E-value=7.3 Score=41.07 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=20.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++=|.|++.-|+ -|||||||+|+-+.
T Consensus 486 l~i~~G~~iaIv--G~sGsGKSTLlklL 511 (694)
T TIGR03375 486 LTIRPGEKVAII--GRIGSGKSTLLKLL 511 (694)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHH
Confidence 455679998888 79999999997643
No 215
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=56.76 E-value=7.9 Score=35.60 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=24.6
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCC---CceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLP---GYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~p---Gwkv~~VGDDI 319 (325)
+.|+.+-|. .|||||||+|.-+. ++.+ | .|.+-|-++
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~p~~~~~G-~i~~~g~~~ 71 (262)
T PRK09984 28 HHGEMVALL--GPSGSGKSTLLRHLSGLITGDKSAGS-HIELLGRTV 71 (262)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhccCCCCCCCce-EEEECCEec
Confidence 458887777 79999999987533 2222 4 466556554
No 216
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.69 E-value=8.1 Score=35.21 Aligned_cols=39 Identities=28% Similarity=0.206 Sum_probs=26.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCC----CceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLP----GYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~p----Gwkv~~VGDDIA 320 (325)
+.|+.+-|. .|||||||+|.-+. ++.. .-+|.+=|.++.
T Consensus 28 ~~G~~~~i~--G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 28 PERQITAII--GPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIY 74 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcc
Confidence 458887777 89999999996533 2221 356776666553
No 217
>KOG0733|consensus
Probab=56.66 E-value=6.2 Score=43.11 Aligned_cols=26 Identities=46% Similarity=0.636 Sum_probs=20.4
Q ss_pred hhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 274 ILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 274 Ilgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
=+||+-|.|--.| -|.|||||-||=.
T Consensus 539 ~lGi~~PsGvLL~----GPPGCGKTLlAKA 564 (802)
T KOG0733|consen 539 ALGIDAPSGVLLC----GPPGCGKTLLAKA 564 (802)
T ss_pred HhCCCCCCceEEe----CCCCccHHHHHHH
Confidence 3688899885443 8999999998853
No 218
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=56.59 E-value=8.3 Score=34.32 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=22.5
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VG 316 (325)
+.|+.+=+. -|||||||+|.= +.++..|. |.+=|
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g 62 (218)
T cd03290 25 PTGQLTMIV--GQVGCGKSSLLLAILGEMQTLEGK-VHWSN 62 (218)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhccCCCCCCe-EEECC
Confidence 468777777 799999999842 23455664 44433
No 219
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=56.47 E-value=8.3 Score=34.10 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
=++|+.+-+. -|+|||||+|.-+. |+..|. |..=|.++
T Consensus 24 i~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~p~~G~-v~~~g~~~ 65 (204)
T PRK13538 24 LNAGELVQIE--GPNGAGKTSLLRILAGLARPDAGE-VLWQGEPI 65 (204)
T ss_pred ECCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEc
Confidence 3467776666 89999999986532 555673 65555554
No 220
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=56.45 E-value=8.6 Score=33.44 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=15.6
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+.|....+. -|+|||||+|+
T Consensus 20 ~~~~~i~l~--G~lGaGKTtl~ 39 (133)
T TIGR00150 20 DFGTVVLLK--GDLGAGKTTLV 39 (133)
T ss_pred CCCCEEEEE--cCCCCCHHHHH
Confidence 446666666 79999999986
No 221
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=56.37 E-value=7.9 Score=35.23 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=25.3
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
..|+.+-+. -|||||||+|+-+ .|+..|. |.+=|.++
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~ 69 (255)
T PRK11300 29 REQEIVSLI--GPNGAGKTTVFNCLTGFYKPTGGT-ILLRGQHI 69 (255)
T ss_pred cCCeEEEEE--CCCCCCHHHHHHHHhCCcCCCcce-EEECCEEC
Confidence 358776666 8999999998653 2555674 66555554
No 222
>PRK06893 DNA replication initiation factor; Validated
Probab=56.28 E-value=6.6 Score=35.91 Aligned_cols=20 Identities=25% Similarity=0.109 Sum_probs=16.3
Q ss_pred ceEEEEeecCCccChhhhcccC
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
...|+. -|||||||-||...
T Consensus 40 ~~l~l~--G~~G~GKThL~~ai 59 (229)
T PRK06893 40 PFFYIW--GGKSSGKSHLLKAV 59 (229)
T ss_pred CeEEEE--CCCCCCHHHHHHHH
Confidence 357888 79999999998753
No 223
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=56.20 E-value=9.5 Score=39.32 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=41.4
Q ss_pred CeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 233 NEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 233 r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
....||..--||=.+ -|-|.=|++.-+++. .|..+++.-|.|--.| -|+|||||-+|=+
T Consensus 109 ~~~~~f~~~~g~~~~--~p~f~dk~~~hi~kn------~l~~~~ik~PlgllL~----GPPGcGKTllAra 167 (413)
T PLN00020 109 QRTRSFDNLVGGYYI--APAFMDKVAVHIAKN------FLALPNIKVPLILGIW----GGKGQGKSFQCEL 167 (413)
T ss_pred hhhcchhhhcCcccc--CHHHHHHHHHHHHhh------hhhccCCCCCeEEEee----CCCCCCHHHHHHH
Confidence 455666655555554 457777888888873 5566888888775554 7999999988643
No 224
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=56.12 E-value=8.4 Score=34.69 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=28.6
Q ss_pred ceeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
.++=..|+..-+. .|||||||+|.-+ .++..|- |..=|.+++
T Consensus 19 s~~i~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~ 64 (232)
T PRK10771 19 DLTVERGERVAIL--GPSGAGKSTLLNLIAGFLTPASGS-LTLNGQDHT 64 (232)
T ss_pred EEEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCce-EEECCeecC
Confidence 3444468888777 8999999999743 2555673 666666654
No 225
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=56.06 E-value=6.1 Score=41.48 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.1
Q ss_pred EEEEeecCCccChhhhcccC
Q psy13078 285 KYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~ 304 (325)
.-|+-.-|||||||++|-+.
T Consensus 285 ~ii~i~G~sgsGKst~a~~l 304 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAV 304 (512)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35677799999999998654
No 226
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=56.05 E-value=8.8 Score=34.32 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. .|||||||+|+-+. ++..|- |.+-|.++
T Consensus 34 ~~Ge~~~i~--G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~ 74 (228)
T PRK10584 34 KRGETIALI--GESGSGKSTLLAILAGLDDGSSGE-VSLVGQPL 74 (228)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHcCCCCCCee-EEECCEEc
Confidence 468777777 89999999997643 445563 55545444
No 227
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=55.99 E-value=8.1 Score=34.65 Aligned_cols=37 Identities=32% Similarity=0.276 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----C---CCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----P---TLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p---~~pGwkv~~VGDDI 319 (325)
..|+..-++ -|||||||+|+=+. + +..| +|.+-|.|+
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLlk~l~G~~~~~~~~~G-~i~~~g~~~ 74 (226)
T cd03234 31 ESGQVMAIL--GSSGSGKTTLLDAISGRVEGGGTTSG-QILFNGQPR 74 (226)
T ss_pred cCCeEEEEE--CCCCCCHHHHHHHHhCccCCCCCCce-EEEECCEEC
Confidence 457776666 89999999986432 3 4455 455556555
No 228
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=55.97 E-value=8.4 Score=35.75 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=16.2
Q ss_pred CCceEEEEeecCCccChhhhcc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.|+..-+. .|||||||+|.-
T Consensus 24 ~Ge~~~i~--G~NGsGKSTLlk 43 (246)
T cd03237 24 ESEVIGIL--GPNGIGKTTFIK 43 (246)
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 47777676 899999999864
No 229
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=55.95 E-value=8.3 Score=34.71 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=26.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|+-+. |+..| +|.+=|.++
T Consensus 24 ~~i~~Ge~~~l~--G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~ 67 (238)
T cd03249 24 LTIPPGKTVALV--GSSGCGKSTVVSLLERFYDPTSG-EILLDGVDI 67 (238)
T ss_pred EEecCCCEEEEE--eCCCCCHHHHHHHHhccCCCCCC-EEEECCEeh
Confidence 333568877777 79999999997532 45556 355555454
No 230
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=55.92 E-value=8.4 Score=35.63 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=25.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
..|+.+-|. .|||||||+|.-+. |+..| .|.+=|.|+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~ 71 (265)
T PRK10253 31 PDGHFTAII--GPNGCGKSTLLRTLSRLMTPAHG-HVWLDGEHI 71 (265)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHcCCCCCCCc-EEEECCEEh
Confidence 358888887 89999999997533 44445 355545454
No 231
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=55.86 E-value=8.6 Score=34.92 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=18.1
Q ss_pred CCCceEEEEeecCCccChhhhcccC
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+.|+..-+. .|||||||+|.-+.
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~l 51 (252)
T PRK14239 29 YPNEITALI--GPSGSGKSTLLRSI 51 (252)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHH
Confidence 458777676 89999999997643
No 232
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=55.79 E-value=6.6 Score=35.13 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.0
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|...-|+ -|+|+|||.||+
T Consensus 17 p~gs~~li~--G~~GsGKT~l~~ 37 (226)
T PF06745_consen 17 PKGSVVLIS--GPPGSGKTTLAL 37 (226)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--eCCCCCcHHHHH
Confidence 678787777 799999999987
No 233
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.74 E-value=7.5 Score=34.87 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=26.5
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. .|+|||||+|..+ .|+..|- |.+=|.++
T Consensus 23 ~i~~Ge~~~l~--G~nGsGKSTLl~~i~Gl~~~~~G~-v~~~g~~~ 65 (236)
T cd03253 23 TIPAGKKVAIV--GPSGSGKSTILRLLFRFYDVSSGS-ILIDGQDI 65 (236)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhcccCCCCCE-EEECCEEh
Confidence 33568877777 8999999999753 3556673 55545454
No 234
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=55.64 E-value=8.5 Score=35.74 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=27.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC-----C----CCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN-----P----TLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~-----p----~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|.-+. | +..| +|.+=|.|+
T Consensus 41 l~i~~Ge~~~I~--G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~ 89 (267)
T PRK14237 41 MQFEKNKITALI--GPSGSGKSTYLRSLNRMNDTIDIARVTG-QILYRGIDI 89 (267)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHHhccCccCCCCcce-EEEECCEEc
Confidence 334568888888 89999999997532 2 2345 466666565
No 235
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=55.59 E-value=8.5 Score=35.83 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=25.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----C-----CCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----P-----TLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p-----~~pGwkv~~VGDDIA 320 (325)
+.|+.+-|. .|||||||+|+-+. + +..|. |.+=|.|+.
T Consensus 49 ~~Ge~~~I~--G~nGsGKSTLl~~laGl~~~~~~~~~~G~-i~i~g~~i~ 95 (272)
T PRK14236 49 PKNRVTAFI--GPSGCGKSTLLRCFNRMNDLVDNCRIEGE-IRLDGQNIY 95 (272)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHhcCCCccCCCCceE-EEECCEECc
Confidence 358888887 89999999997543 2 23564 555565553
No 236
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.54 E-value=8.7 Score=35.02 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.7
Q ss_pred CCceEEEEeecCCccChhhhcccC
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
.|+.+-|. -|||||||+|+-+.
T Consensus 30 ~Ge~~~I~--G~nGsGKSTLl~~i 51 (251)
T PRK14244 30 KREVTAFI--GPSGCGKSTFLRCF 51 (251)
T ss_pred CCCEEEEE--CCCCCCHHHHHHHH
Confidence 48777676 89999999998653
No 237
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=55.53 E-value=7.3 Score=35.76 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.2
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+.+-|. -|||||||+|..+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (258)
T PRK14241 28 EPRSVTAFI--GPSGCGKSTVLRT 49 (258)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999999753
No 238
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=55.53 E-value=8.7 Score=34.66 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=14.4
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
.|+..-++ -|+|||||+|.
T Consensus 24 ~g~~~~lt--GpNg~GKSTll 42 (199)
T cd03283 24 KKNGILIT--GSNMSGKSTFL 42 (199)
T ss_pred CCcEEEEE--CCCCCChHHHH
Confidence 36556666 89999999883
No 239
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=55.48 E-value=8.5 Score=38.32 Aligned_cols=27 Identities=41% Similarity=0.486 Sum_probs=20.0
Q ss_pred hhhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 273 LILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 273 lIlgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
--+|+..|.|--.| -|+|||||.+|=.
T Consensus 158 ~~~g~~~p~gvLL~----GppGtGKT~lAka 184 (389)
T PRK03992 158 EEVGIEPPKGVLLY----GPPGTGKTLLAKA 184 (389)
T ss_pred HhcCCCCCCceEEE----CCCCCChHHHHHH
Confidence 35688888773333 8999999999743
No 240
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=55.46 E-value=8.8 Score=33.42 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=25.7
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. -|||||||+|.-+. ++..| +|.+=|.|+.
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~ 65 (182)
T cd03215 24 RAGEIVGIA--GLVGNGQTELAEALFGLRPPASG-EITLDGKPVT 65 (182)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECC
Confidence 568777776 79999999997532 44566 3555555553
No 241
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=55.44 E-value=7.4 Score=38.77 Aligned_cols=21 Identities=24% Similarity=-0.040 Sum_probs=18.4
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|..+=|+ -|+|||||.|+|
T Consensus 124 ~~G~ItEI~--G~~GsGKTql~l 144 (344)
T PLN03187 124 ETRCITEAF--GEFRSGKTQLAH 144 (344)
T ss_pred CCCeEEEEe--cCCCCChhHHHH
Confidence 668888888 799999999987
No 242
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=55.43 E-value=6.7 Score=38.17 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=26.3
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CC---CCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PT---LPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~---~pGwkv~~VGDDIA 320 (325)
+=..|+..-|. .|||||||+|+.+. ++ ..| +|.+=|.||.
T Consensus 38 ~i~~Ge~~~iv--G~sGsGKSTL~~~l~Gl~~p~~~~sG-~I~~~G~~i~ 84 (330)
T PRK09473 38 SLRAGETLGIV--GESGSGKSQTAFALMGLLAANGRIGG-SATFNGREIL 84 (330)
T ss_pred EEcCCCEEEEE--CCCCchHHHHHHHHHcCCCCCCCCCe-EEEECCEECC
Confidence 33468877776 89999999998643 22 134 4666666654
No 243
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=55.30 E-value=8.6 Score=34.68 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=24.1
Q ss_pred CCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
.|+..-++ .|||||||+|.-+ .++..| +|.+=|-++
T Consensus 30 ~Ge~~~i~--G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~ 69 (237)
T PRK11614 30 QGEIVTLI--GANGAGKTTLLGTLCGDPRATSG-RIVFDGKDI 69 (237)
T ss_pred CCcEEEEE--CCCCCCHHHHHHHHcCCCCCCCc-eEEECCEec
Confidence 58887777 8999999998632 244556 355555444
No 244
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=55.25 E-value=7.3 Score=34.62 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=28.6
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
.++=..|+..-+. .|||||||+|+.+. ++..| +|.+=|.||.
T Consensus 18 s~~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~ 63 (213)
T TIGR01277 18 DLNVADGEIVAIM--GPSGAGKSTLLNLIAGFIEPASG-SIKVNDQSHT 63 (213)
T ss_pred EEEEeCCcEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEcc
Confidence 3444568888777 89999999997643 33344 5666666653
No 245
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=55.23 E-value=7.7 Score=35.97 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.0
Q ss_pred eCCCCceEEEEeecCCccChhhhccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+=+.|+.+-+. -|||||||+|.-+
T Consensus 32 ~i~~Ge~~~i~--G~nGsGKSTLl~~ 55 (264)
T PRK14243 32 DIPKNQITAFI--GPSGCGKSTILRC 55 (264)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 33568887777 7999999999854
No 246
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=55.13 E-value=8.8 Score=35.74 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=25.7
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+=+.|+..-+. .|||||||+|.-+ .++..|. |.+=|.++
T Consensus 29 ~i~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i 71 (272)
T PRK15056 29 TVPGGSIAALV--GVNGSGKSTLFKALMGFVRLASGK-ISILGQPT 71 (272)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEEh
Confidence 33468887777 8999999998632 2455564 55545444
No 247
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.05 E-value=7.7 Score=43.47 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.1
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
-|+=|.++-+=|| -||||||++|||
T Consensus 16 ~v~iP~~~l~v~T--GvSGSGKSSLaf 40 (924)
T TIGR00630 16 DVEIPRDKLVVIT--GLSGSGKSSLAF 40 (924)
T ss_pred ccccCCCceEEEe--cCCCCCchhHHH
Confidence 4566888887777 899999999997
No 248
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=54.96 E-value=8.9 Score=34.65 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCceEEEEeecCCccChhhhcccC------CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN------PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~------p~~pGwkv~~VGDDI 319 (325)
..|+..-|. -|||||||+|.=+. ++..| +|.+=|.++
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~ 67 (248)
T PRK09580 25 RPGEVHAIM--GPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDL 67 (248)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHcCCccCCCCce-EEEECCCcc
Confidence 357777777 89999999986322 23346 455545444
No 249
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=54.92 E-value=7.8 Score=43.54 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=20.9
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
-|+=|.++-+=|| -||||||++|||
T Consensus 20 ~v~iP~~~l~v~T--GvSGSGKSSLaf 44 (943)
T PRK00349 20 DLDIPRDKLVVFT--GLSGSGKSSLAF 44 (943)
T ss_pred ccccCCCceEEEe--cCCCCCchhHHH
Confidence 4566888877777 899999999997
No 250
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=54.86 E-value=8.5 Score=37.53 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=26.9
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
+=+.|+.+-+. .|||||||+|+-+ .++..| +|.+=|.||.
T Consensus 27 ~i~~Gei~~ii--G~nGsGKSTLlk~L~Gl~~p~~G-~I~~~g~~i~ 70 (343)
T PRK11153 27 HIPAGEIFGVI--GASGAGKSTLIRCINLLERPTSG-RVLVDGQDLT 70 (343)
T ss_pred EEcCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCce-EEEECCEECC
Confidence 33568887777 7999999999743 244445 4666665653
No 251
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=54.85 E-value=9 Score=34.81 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=18.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+.|+..-+. -|||||||+|.-+.
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~i 49 (250)
T PRK14240 27 EENQVTALI--GPSGCGKSTFLRTL 49 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 458877776 89999999997543
No 252
>PRK07550 hypothetical protein; Provisional
Probab=54.83 E-value=89 Score=30.09 Aligned_cols=107 Identities=14% Similarity=0.159 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCC
Q psy13078 30 SPKLKSFIDNCVE-----LCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQE 104 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~ 104 (325)
.+++++.+++... -+.|++|++..|+.+=...+.+.+++.|..+-+.. | +| ......++...-+++-.+-
T Consensus 69 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~-p-~y---~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 69 LPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPL-P-WY---FNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred CHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcC-C-CC---cchHHHHHhcCCEEEEEec
Confidence 5677777776653 27899999999998888888888877775444322 2 11 2223345555555544443
Q ss_pred CCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 105 KAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 105 ~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
.++ .+| .+++++++.+++ +-|-.|++.-+ -|.|.-++
T Consensus 144 ~~~-------------~~~~~~~~~l~~~~~~------~~~~v~~~~P~-NPtG~~~~ 181 (386)
T PRK07550 144 DEG-------------PGLLPDPAAAEALITP------RTRAIALVTPN-NPTGVVYP 181 (386)
T ss_pred CCC-------------cCCCCCHHHHHHHhcc------cCcEEEEeCCC-CCCCcccC
Confidence 211 134 477777777754 23455555444 57777665
No 253
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=54.80 E-value=8.9 Score=34.86 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVP 318 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDD 318 (325)
+.|+.+-+. .|||||||+|+= +.++..| +|..=|.+
T Consensus 45 ~~Ge~~~i~--G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~ 84 (236)
T cd03267 45 EKGEIVGFI--GPNGAGKTTTLKILSGLLQPTSG-EVRVAGLV 84 (236)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCcCCCce-EEEECCEE
Confidence 458777777 899999999842 2244556 34443433
No 254
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=54.63 E-value=7.8 Score=39.68 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=18.6
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+=|+ -|+|||||.||+-
T Consensus 19 p~g~~~Li~--G~pGsGKT~la~q 40 (484)
T TIGR02655 19 PIGRSTLVS--GTSGTGKTLFSIQ 40 (484)
T ss_pred CCCeEEEEE--cCCCCCHHHHHHH
Confidence 678777777 7999999999983
No 255
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=54.48 E-value=9.6 Score=34.06 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
..|+..-+. .|||||||+|.-+ .++..|- |..=|.+|
T Consensus 35 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~i 75 (214)
T PRK13543 35 DAGEALLVQ--GDNGAGKTTLLRVLAGLLHVESGQ-IQIDGKTA 75 (214)
T ss_pred CCCCEEEEE--cCCCCCHHHHHHHHhCCCCCCCee-EEECCEEc
Confidence 468877777 8999999998732 2445563 44444443
No 256
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=54.43 E-value=9.1 Score=35.52 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=25.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-|. .|||||||+|.-+ .++..|- |.+=|.++
T Consensus 34 l~i~~Ge~~~i~--G~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~ 77 (267)
T PRK15112 34 FTLREGQTLAII--GENGSGKSTLAKMLAGMIEPTSGE-LLIDDHPL 77 (267)
T ss_pred EEecCCCEEEEE--cCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEC
Confidence 333468887777 8999999998542 2445563 55445444
No 257
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=54.40 E-value=12 Score=34.13 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=26.2
Q ss_pred CCCceEEEEeecCCccChhhhcccC-------CCCC-CceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN-------PTLP-GYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~-------p~~p-Gwkv~~VGDDIA 320 (325)
+.|+.+-|. .|||+|||+|+-+. |+.| .-+|..=|.++.
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 27 EEKSVVAFI--GPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 458776666 89999999997543 3221 346777676664
No 258
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=54.31 E-value=9.2 Score=35.02 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=26.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
..|+..-+. .|||||||+|.-+. ++..| +|..-|.++
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~ 66 (255)
T PRK11231 26 PTGKITALI--GPNGCGKSTLLKCFARLLTPQSG-TVFLGDKPI 66 (255)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCcCCCCc-EEEECCEEh
Confidence 458887777 89999999997533 44556 466656554
No 259
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=54.12 E-value=8.8 Score=36.03 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=24.6
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+=+. .|||||||+|.-+. ++..|- |..=|-||
T Consensus 35 ~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i 75 (289)
T PRK13645 35 KKNKVTCVI--GTTGSGKSTMIQLTNGLIISETGQ-TIVGDYAI 75 (289)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCce-EEECCEEc
Confidence 457776666 89999999997533 555663 55545444
No 260
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=53.95 E-value=3.1e+02 Score=29.43 Aligned_cols=226 Identities=18% Similarity=0.204 Sum_probs=125.7
Q ss_pred HHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCC-CCcCCCCCCCccCCCccccCHHHHHHHHHhcCc
Q psy13078 60 KELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEK-AETVPDTKPGVKGTLGNWISPQDYEEAIMQRFP 138 (325)
Q Consensus 60 ~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~-~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~ 138 (325)
+.|-++.++.|+-..- . -|...++|. .=..|....-||+-++. +|..+. +.-++.++++.+.. |..++-
T Consensus 28 ~~L~e~~i~~~eg~lt-~-~Gal~~~TG-~~TGRSPkDkfiV~~~~t~~~i~W------~~~Nkpi~~e~f~~-L~~~~~ 97 (529)
T COG1866 28 AQLYEEAIRRGEGVLT-A-TGALRVDTG-IYTGRSPKDKFIVRDDSTRDTIWW------GTRNKPISPETFDR-LKGDVT 97 (529)
T ss_pred HHHHHHHhhcCCCccC-C-CCceEEecc-cccCCCCCCceEEecCcccccccc------cccCccCCHHHHHH-HHHHHH
Confidence 4677777777743322 1 244333332 33566666667764433 343333 12457777776654 555667
Q ss_pred cccCCCeEEEEecccCCCCCCCCccee-eccCchhHHhhhhhc-cccCHHHHHhcCCCCCceeeeeccCCCCCCCCCCCC
Q psy13078 139 GCMKGRTMYVIPFSMGPVGSPLSKIGV-EITDSPYVVGSMRIM-TRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPE 216 (325)
Q Consensus 139 G~M~GRtMyViPfsmGPigsp~s~~GV-qlTDS~YVv~sm~im-tR~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~~~~ 216 (325)
--.+||.+||+=-.-|-= +-..+-| -+|-++|=.|=|+=| .|-..+.+..-.. +|+-- ++.. . ...
T Consensus 98 ~yl~~k~lfv~d~~~Ga~--~~~~l~vrvvte~Awh~lF~~nlfIrP~~e~l~~~~~--dftvi--n~p~-f-----~~~ 165 (529)
T COG1866 98 DYLSGKDLFVVDGFAGAD--PDYRLPVRVVTEVAWHALFIRNLFIRPTGEELSTFKP--DFTVI--NAPS-F-----KAD 165 (529)
T ss_pred HHhccCcEEEEEeeecCC--ccceeeeEeehhhHHHHHHHHhcccccchhhhccCCC--CeEEE--eCCc-C-----CCC
Confidence 778999999987666642 2222222 357777766655544 3545543333222 44321 1100 0 001
Q ss_pred CC---CCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCC
Q psy13078 217 WP---CDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPS 293 (325)
Q Consensus 217 Wp---cn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPS 293 (325)
|- +|.+ .+|+.+-+++.+.-=|+-|+|-- ||. -.+.--++--.+|=|. |.-....+|+|...-|- -=|
T Consensus 166 ~~~~g~~Se-~~i~~n~~~~~~lIggT~YaGEM---KK~-~fs~mnylLP~~~i~~--MHcsANvG~~gdvalFF--GLS 236 (529)
T COG1866 166 PKRDGLRSE-TFVAFNFTERIVLIGGTWYAGEM---KKG-IFSVMNYLLPLKGILS--MHCSANVGEKGDVALFF--GLS 236 (529)
T ss_pred hhhcccccc-cEEEEecccceeeeeccchhhhh---hhh-HHHHhhcccccccccc--ceeccccCcCCCeEEEE--ecc
Confidence 11 2344 68888888888888899999853 665 3333222223333332 33335567778876554 369
Q ss_pred ccChhhhcccCCCCCCceEEEeccccccc
Q psy13078 294 ACGKTNLAMLNPTLPGYKVECVGVPYKGR 322 (325)
Q Consensus 294 aCGKTnlAMl~p~~pGwkv~~VGDDIA~~ 322 (325)
|.|||+|. +.|.= +.||||+-|-
T Consensus 237 GTGKTTLS----aDp~R--~LIGDDEHgW 259 (529)
T COG1866 237 GTGKTTLS----ADPHR--RLIGDDEHGW 259 (529)
T ss_pred CCCcceec----cCCcc--ccccCccccc
Confidence 99999883 33443 8999998763
No 261
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=53.93 E-value=7.8 Score=37.59 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=18.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=+.|+..=+. .|||||||.|+.+
T Consensus 28 l~i~~Ge~~~lv--G~sGsGKSTL~~~ 52 (326)
T PRK11022 28 YSVKQGEVVGIV--GESGSGKSVSSLA 52 (326)
T ss_pred EEECCCCEEEEE--CCCCChHHHHHHH
Confidence 344568776666 8999999999753
No 262
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=53.81 E-value=9.9 Score=36.68 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=26.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhc--c--cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLA--M--LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlA--M--l~p~~pGwkv~~VGDDIA 320 (325)
++=|+|+.+=|- -|.|||||+|- | +.++..| .|..=|-||.
T Consensus 23 ~~i~~G~i~~ii--GpNG~GKSTLLk~l~g~l~p~~G-~V~l~g~~i~ 67 (258)
T COG1120 23 FSIPKGEITGIL--GPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIA 67 (258)
T ss_pred EEecCCcEEEEE--CCCCCCHHHHHHHHhccCCCCCC-EEEECCCchh
Confidence 445678776666 79999999983 1 2244445 3666665554
No 263
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=53.75 E-value=9.5 Score=35.53 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=16.3
Q ss_pred eeCCCCceEEEEeecCCccChhhh
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnl 300 (325)
.|=-+|+..-+- -||||||++|
T Consensus 23 ~Tia~GeivtlM--GPSGcGKSTL 44 (213)
T COG4136 23 FTIAKGEIVTLM--GPSGCGKSTL 44 (213)
T ss_pred EEecCCcEEEEE--CCCCccHHHH
Confidence 344568776555 7999999876
No 264
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=53.66 E-value=9.7 Score=35.66 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=20.5
Q ss_pred CCceEEEEeecCCccChhhhccc----CCCCCCc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAML----NPTLPGY 310 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGw 310 (325)
.|+.+-+. -|||||||+|.-+ .++..|.
T Consensus 25 ~Ge~~~Iv--G~nGsGKSTLlk~l~Gl~~p~~G~ 56 (255)
T cd03236 25 EGQVLGLV--GPNGIGKSTALKILAGKLKPNLGK 56 (255)
T ss_pred CCCEEEEE--CCCCCCHHHHHHHHhCCcCCCCce
Confidence 58888887 8999999998542 2445664
No 265
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=53.56 E-value=8.9 Score=38.18 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=28.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA~ 321 (325)
++=+.|+..-+. -|||||||+|.-+ .++..|- |.+=|.||..
T Consensus 14 ~~i~~Gei~~l~--G~sGsGKSTLLr~L~Gl~~p~~G~-I~i~G~~i~~ 59 (363)
T TIGR01186 14 LAIAKGEIFVIM--GLSGSGKSTTVRMLNRLIEPTAGQ-IFIDGENIMK 59 (363)
T ss_pred EEEcCCCEEEEE--CCCCChHHHHHHHHhCCCCCCceE-EEECCEECCc
Confidence 334568887777 8999999998653 3555564 6666666653
No 266
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=53.50 E-value=9.1 Score=37.82 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=25.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. .|||||||+|.-+. ++..|. |.+=|.|+
T Consensus 24 l~i~~Ge~~~l~--G~nGsGKSTLL~~iaGl~~p~~G~-I~~~g~~i 67 (369)
T PRK11000 24 LDIHEGEFVVFV--GPSGCGKSTLLRMIAGLEDITSGD-LFIGEKRM 67 (369)
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCceE-EEECCEEC
Confidence 333567766666 79999999986533 445564 55545454
No 267
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.29 E-value=10 Score=34.53 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=26.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC-------C--CCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN-------P--TLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~-------p--~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|+-+. | +..| +|..=|.+|
T Consensus 24 ~~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i 72 (250)
T PRK14266 24 LDIPKNSVTALI--GPSGCGKSTFIRTLNRMNDLIPGFRHEG-HIYLDGVDI 72 (250)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHHhhhccCCCCCCcc-EEEECCEEc
Confidence 333468887777 89999999997543 2 1346 466656554
No 268
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=53.22 E-value=10 Score=33.33 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
.+|+..-+. -|+|||||+|.-+. ++..| +|.+=|.++
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 64 (198)
T TIGR01189 24 NAGEALQVT--GPNGIGKTTLLRILAGLLRPDSG-EVRWNGTAL 64 (198)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEc
Confidence 357776666 89999999997532 44455 455555554
No 269
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=53.21 E-value=8.2 Score=40.76 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=28.0
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
.++=|.|+++-|. .|||||||+|+-+. ++..| +|.+=|-||
T Consensus 499 sl~i~~Ge~vaIv--G~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i 543 (710)
T TIGR03796 499 SLTLQPGQRVALV--GGSGSGKSTIAKLVAGLYQPWSG-EILFDGIPR 543 (710)
T ss_pred eEEEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEeH
Confidence 4555779998888 89999999998644 44445 344434343
No 270
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=53.19 E-value=9.7 Score=35.18 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=26.1
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
+.|+.+-|. -|||||||+|.-+ .++..|. |.+=|.++.
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~p~~G~-i~~~g~~~~ 67 (258)
T PRK13548 26 RPGEVVAIL--GPNGAGKSTLLRALSGELSPDSGE-VRLNGRPLA 67 (258)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEcc
Confidence 458877777 7999999998732 3555674 655565553
No 271
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.11 E-value=9.7 Score=35.64 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=25.3
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
..|+.+-|. .|||||||+|.=+ .++..| +|.+-|.|+.
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~ 70 (274)
T PRK13647 29 PEGSKTALL--GPNGAGKSTLLLHLNGIYLPQRG-RVKVMGREVN 70 (274)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHhcCCCCCce-EEEECCEECC
Confidence 458777666 8999999998642 234445 4666665553
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=53.10 E-value=8.4 Score=37.61 Aligned_cols=22 Identities=23% Similarity=0.159 Sum_probs=18.6
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|..+=|+ -|+|||||.|||.
T Consensus 94 ~~G~iteI~--G~~GsGKTql~lq 115 (313)
T TIGR02238 94 ESMSITEVF--GEFRCGKTQLSHT 115 (313)
T ss_pred cCCeEEEEE--CCCCCCcCHHHHH
Confidence 568888888 5999999999973
No 273
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=53.02 E-value=10 Score=34.85 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=27.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+.+-+. .|+|||||+|.-+. |+ .| .|.+=|.||.
T Consensus 17 l~i~~Gei~~l~--G~nGsGKSTLl~~l~Gl~~~-~G-~i~~~g~~i~ 60 (248)
T PRK03695 17 AEVRAGEILHLV--GPNGAGKSTLLARMAGLLPG-SG-SIQFAGQPLE 60 (248)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHcCCCCC-Ce-EEEECCEecC
Confidence 444668887777 89999999986432 32 45 4666676664
No 274
>PTZ00377 alanine aminotransferase; Provisional
Probab=52.94 E-value=50 Score=33.34 Aligned_cols=123 Identities=24% Similarity=0.386 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHhh-----cCCCeEEEEcCCHHHHHHHHHHHH-hcCccc--ccCCCCCcEEeccCCCcccccccceEEE
Q psy13078 30 SPKLKSFIDNCVEL-----CQPSDVHICDGSEREYKELIDLMV-KDKTLR--PVPKYENCWLARTNPADVARVESKTFIC 101 (325)
Q Consensus 30 ~~~v~~~V~e~a~L-----~~P~~I~icdGS~eE~~~l~~~l~-~~G~~~--~L~~~~n~~l~rsdp~DvARve~rTfI~ 101 (325)
.+++++.|++...- +.|++|++..|+.+=...+.+.++ +.|..+ +-+.|++. ...++.-..+.+.
T Consensus 117 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y-------~~~~~~~g~~~v~ 189 (481)
T PTZ00377 117 YPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLY-------SAAITLLGGKQVP 189 (481)
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhH-------HHHHHHcCCEEEE
Confidence 56777777777653 799999999999999999988887 567433 33334332 2344444444433
Q ss_pred cCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc------------ce-eec
Q psy13078 102 TQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK------------IG-VEI 167 (325)
Q Consensus 102 t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~------------~G-Vql 167 (325)
.+-.++ ++| ++++++++.+.+.-..-=+-|-+|++-. -=|.|.-++. .+ +=|
T Consensus 190 v~~~~~-------------~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P-~NPTG~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 190 YYLDEE-------------KGWSLDQEELEEAYEQAVRNGITPRALVVINP-GNPTGQVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred EEeccc-------------cCCCCCHHHHHHHHHHHHhcCCCeeEEEEECC-CCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 322211 134 5788888887642110001234566633 3499988872 22 467
Q ss_pred cCchhH
Q psy13078 168 TDSPYV 173 (325)
Q Consensus 168 TDS~YV 173 (325)
.|.+|-
T Consensus 256 ~De~Y~ 261 (481)
T PTZ00377 256 ADEVYQ 261 (481)
T ss_pred EehhhH
Confidence 888886
No 275
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=52.85 E-value=10 Score=34.78 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=26.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+..-|. -|||||||+|+-+. ++..| +|..=|.++
T Consensus 26 ~~i~~Ge~~~l~--G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~ 69 (257)
T PRK10619 26 LQANAGDVISII--GSSGSGKSTFLRCINFLEKPSEG-SIVVNGQTI 69 (257)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEc
Confidence 444568888777 79999999996432 44445 466656555
No 276
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=52.79 E-value=10 Score=34.44 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
..|+..-++ .|||||||+|.- +.++..| +|.+=|.+|+
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~i~G~~~~~~G-~i~i~g~~~~ 65 (237)
T TIGR00968 24 PTGSLVALL--GPSGSGKSTLLRIIAGLEQPDSG-RIRLNGQDAT 65 (237)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcC
Confidence 458887777 899999999843 2355566 4666666664
No 277
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=52.62 E-value=10 Score=35.09 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=24.1
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+..-|. -|||||||+|.-+. ++..| +|.+=|.+|
T Consensus 35 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i 75 (265)
T TIGR02769 35 EEGETVGLL--GRSGCGKSTLARLLLGLEKPAQG-TVSFRGQDL 75 (265)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEc
Confidence 468877777 89999999987532 34445 344444444
No 278
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=52.53 E-value=8.5 Score=39.68 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=27.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+++-+. .|||||||+|+-+. ++-.|- |.+-|.||
T Consensus 363 ~~i~~G~~~aiv--G~sGsGKSTl~~ll~g~~~p~~G~-i~~~g~~i 406 (555)
T TIGR01194 363 LRIAQGDIVFIV--GENGCGKSTLAKLFCGLYIPQEGE-ILLDGAAV 406 (555)
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEC
Confidence 455679998888 89999999998754 333443 44444444
No 279
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=52.42 E-value=8.5 Score=37.53 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=17.2
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+=++| |+|||||.||+
T Consensus 94 ~~g~i~~i~G--~~g~GKT~l~~ 114 (316)
T TIGR02239 94 ETGSITEIFG--EFRTGKTQLCH 114 (316)
T ss_pred CCCeEEEEEC--CCCCCcCHHHH
Confidence 4477777775 99999999997
No 280
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=52.24 E-value=10 Score=35.29 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=18.8
Q ss_pred eCCCCceEEEEeecCCccChhhhccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+=+.|+.+-+. .|||||||+|+-+
T Consensus 46 ~i~~Ge~~~I~--G~nGsGKSTLl~~ 69 (271)
T PRK14238 46 DIHENEVTAII--GPSGCGKSTYIKT 69 (271)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 33568888777 7999999999754
No 281
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=52.15 E-value=11 Score=34.67 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=25.4
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
..|+..-+. .|+|||||+|+-+. |+..| +|..=|.++
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~ 65 (256)
T TIGR03873 25 PPGSLTGLL--GPNGSGKSTLLRLLAGALRPDAG-TVDLAGVDL 65 (256)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHcCCCCCCCC-EEEECCEEc
Confidence 458888777 89999999986533 44556 355555454
No 282
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=51.96 E-value=11 Score=33.69 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=24.3
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+.|+..-|. -|||||||+|.=+ .|+..| +|.+-|.++
T Consensus 29 ~~G~~~~I~--G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~ 69 (220)
T TIGR02982 29 NPGEIVILT--GPSGSGKTTLLTLIGGLRSVQEG-SLKVLGQEL 69 (220)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEh
Confidence 568777777 8999999998532 244556 255545554
No 283
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=51.81 E-value=11 Score=37.52 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCC--CceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLP--GYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~p--Gwkv~~VGDDIA 320 (325)
+.|+.+ +--.|||||||+|.= +.++.. | +|.+=|.|+.
T Consensus 29 ~~Ge~~--~llGpsGsGKSTLLr~iaGl~~p~~~~G-~i~~~g~~~~ 72 (362)
T TIGR03258 29 EAGELL--ALIGKSGCGKTTLLRAIAGFVKAAGLTG-RIAIADRDLT 72 (362)
T ss_pred CCCCEE--EEECCCCCCHHHHHHHHhCCCCCCCCCE-EEEECCEECC
Confidence 456654 444899999999742 334445 6 4666666654
No 284
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=51.77 E-value=11 Score=35.89 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=27.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|+|||||+|.-+ .++..| +|.+-|.|+
T Consensus 14 ~~i~~Ge~~~l~--G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 57 (302)
T TIGR01188 14 FKVREGEVFGFL--GPNGAGKTTTIRMLTTLLRPTSG-TARVAGYDV 57 (302)
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEc
Confidence 333568877777 7999999998742 244556 466666665
No 285
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.76 E-value=11 Score=35.71 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=17.3
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
..|+..-|. .|||||||+|.-
T Consensus 63 ~~Ge~~~I~--G~nGsGKSTLl~ 83 (285)
T PRK14254 63 PENQVTAMI--GPSGCGKSTFLR 83 (285)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 358888787 899999999963
No 286
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=51.53 E-value=9.3 Score=39.10 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=27.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|++.-|. -|||||||+|+-+. ++..|- |..=|-||
T Consensus 339 ~~i~~G~~~~iv--G~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~i 382 (544)
T TIGR01842 339 FRLQAGEALAII--GPSGSGKSTLARLIVGIWPPTSGS-VRLDGADL 382 (544)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCce-EEECCEeh
Confidence 444679888888 79999999998643 445552 44444443
No 287
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=51.46 E-value=11 Score=33.65 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=22.9
Q ss_pred CCceEEEEeecCCccChhhhcccCCC---CCCceEEEec
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVG 316 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~VG 316 (325)
.++-.++. -|+|||||.||-..-- -.|+.+.++.
T Consensus 41 ~~~~~~l~--G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLW--GEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEE--CCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 35567777 7999999999864321 2566666554
No 288
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=51.45 E-value=9.7 Score=38.48 Aligned_cols=38 Identities=29% Similarity=0.247 Sum_probs=26.0
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
+.|+.+-+. -|||||||+|.-+ .++..| +|.+=|.||.
T Consensus 52 ~~Gei~~Lv--G~NGsGKSTLLr~I~Gl~~p~sG-~I~i~G~~i~ 93 (400)
T PRK10070 52 EEGEIFVIM--GLSGSGKSTMVRLLNRLIEPTRG-QVLIDGVDIA 93 (400)
T ss_pred cCCCEEEEE--CCCCchHHHHHHHHHcCCCCCCC-EEEECCEECC
Confidence 568887777 8999999998642 344556 3555555553
No 289
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.42 E-value=11 Score=35.24 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=25.7
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCC----CceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLP----GYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~p----Gwkv~~VGDDI 319 (325)
+.|+..-|. .|||||||+|+-+. ++.| .-+|..=|.||
T Consensus 44 ~~Ge~~~Ii--G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 44 PAKKIIAFI--GPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 468888777 89999999997532 1112 33576666665
No 290
>PRK07324 transaminase; Validated
Probab=51.22 E-value=53 Score=31.85 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=66.3
Q ss_pred cCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCc
Q psy13078 29 ISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAET 108 (325)
Q Consensus 29 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da 108 (325)
-.+++++-|++...-+.|++|.++.|+.+=...+...++..|..+=+. .|. | ....++++...-..+..+-.++
T Consensus 63 G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~-~P~-y---~~~~~~~~~~g~~v~~v~~~~~- 136 (373)
T PRK07324 63 GSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISV-YPT-Y---QQLYDIPESLGAEVDYWQLKEE- 136 (373)
T ss_pred CCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEc-CCC-c---hhHHHHHHHcCCEEEEEecccc-
Confidence 367888888887655789999999999998888888887777544332 232 1 1122444444433333222211
Q ss_pred CCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 109 VPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 109 ~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
++| .+.+++.+.+.+ +-| +.+++..-=|.|.-++
T Consensus 137 ------------~~~~~d~~~l~~~~~~------~~k-li~i~~p~NPtG~~~~ 171 (373)
T PRK07324 137 ------------NGWLPDLDELRRLVRP------NTK-LICINNANNPTGALMD 171 (373)
T ss_pred ------------cCCCCCHHHHHHhCCC------CCc-EEEEeCCCCCCCCCCC
Confidence 145 467777665543 223 6677777778887776
No 291
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=51.20 E-value=11 Score=35.39 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=17.3
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
..|+.+-+. .|||||||+|.=
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~ 45 (272)
T PRK13547 25 EPGRVTALL--GRNGAGKSTLLK 45 (272)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 358887777 899999999864
No 292
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=51.13 E-value=11 Score=33.88 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=24.1
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
..|+.+-+. -|||||||+|.- +.++..| +|..=|.++
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~ 66 (242)
T TIGR03411 26 DPGELRVII--GPNGAGKTTMMDVITGKTRPDEG-SVLFGGTDL 66 (242)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCC-eEEECCeec
Confidence 458887777 799999999853 2244556 355444444
No 293
>PRK08960 hypothetical protein; Provisional
Probab=51.05 E-value=98 Score=29.90 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEEc
Q psy13078 30 SPKLKSFIDNCVE-----LCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
.+++++.|++... -+.|++|.+..|+.+=...+...+.+.|..+-+ +.|++.. ..++.-..+.+..
T Consensus 71 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~-------~~~~~~g~~~~~v 143 (387)
T PRK08960 71 LPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNR-------HFLRLVEGAAQLV 143 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchH-------HHHHhcCCeEEEE
Confidence 4677777777653 279999999999999999998888887754333 2344332 1223223333322
Q ss_pred CCCCCcCCCCCCCccCCCcc-ccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 103 QEKAETVPDTKPGVKGTLGN-WISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 103 ~~~~da~p~~~~Gv~~~l~n-wm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
+-.++ ++ .++.+++.+.+.+ ...+.+++..-=|.|.-++
T Consensus 144 ~~~~~-------------~~~~~d~~~l~~~~~~-------~~~~i~i~~p~NPtG~~~~ 183 (387)
T PRK08960 144 PVGPD-------------SRYQLTPALVERHWNA-------DTVGALVASPANPTGTLLS 183 (387)
T ss_pred ecCcc-------------cCCCCCHHHHHHHhCc-------cceEEEEECCCCCCCcCcC
Confidence 21111 12 3567777766543 2345566555568887665
No 294
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=51.02 E-value=9.9 Score=35.68 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=29.5
Q ss_pred CCCCceEEEEeecCCccChhhhcccCCC---CCCceEEEe-cccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECV-GVPY 319 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~V-GDDI 319 (325)
+-+|...|+| -.||+|||++|...-. .-|+.+... ||.+
T Consensus 20 ~~~~~viW~T--GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 20 GQKGAVIWFT--GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CCCCeEEEee--cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 4457899999 7999999999986432 368888776 4543
No 295
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.01 E-value=11 Score=33.21 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=16.2
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
..|+..=+. .|||||||+|.-
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLl~ 51 (192)
T cd03232 31 KPGTLTALM--GESGAGKTTLLD 51 (192)
T ss_pred eCCcEEEEE--CCCCCCHHHHHH
Confidence 347666666 899999999864
No 296
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=50.84 E-value=9.7 Score=39.09 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=21.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccCC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLNP 305 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~p 305 (325)
++=+.|++.-+. -|||||||+|+-|..
T Consensus 350 ~~i~~Ge~vaiV--G~sGsGKSTl~~LL~ 376 (567)
T COG1132 350 FSIEPGEKVAIV--GPSGSGKSTLIKLLL 376 (567)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHh
Confidence 335679888777 799999999987653
No 297
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.78 E-value=12 Score=34.11 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=25.3
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CC-----CCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PT-----LPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~-----~pGwkv~~VGDDIA 320 (325)
..|+.+-+. .|||||||+|+-+. ++ ..| +|+.-|-+++
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~ 73 (249)
T PRK14253 27 PARQVTALI--GPSGCGKSTLLRCLNRMNDLIEGVKITG-KLTMDGEDIY 73 (249)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEEcc
Confidence 458777777 89999999998543 21 345 4555554543
No 298
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=50.61 E-value=9.3 Score=37.96 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.6
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+=|+| |+|||||.||+
T Consensus 121 ~~g~i~~i~G--~~g~GKT~l~~ 141 (342)
T PLN03186 121 ETGSITEIYG--EFRTGKTQLCH 141 (342)
T ss_pred cCceEEEEEC--CCCCCccHHHH
Confidence 4587777775 99999999997
No 299
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=50.57 E-value=11 Score=35.35 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=25.7
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
+.|+.+-+. .|||||||+|.-+ .++..| +|.+=|-||.
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~ 72 (279)
T PRK13650 31 KQGEWLSII--GHNGSGKSTTVRLIDGLLEAESG-QIIIDGDLLT 72 (279)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECC
Confidence 458877777 8999999998653 245566 3555555553
No 300
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=50.29 E-value=11 Score=33.57 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=20.3
Q ss_pred CCceEEEEeecCCccChhhhcccCCC---CCCceEEEe
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECV 315 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~V 315 (325)
+++-.|+.| |+|+|||-||...-- -.|.+|.++
T Consensus 46 ~~~~l~l~G--~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 46 NGENLILYG--PPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp C--EEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred cCeEEEEEh--hHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 355688886 899999999875321 156666654
No 301
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=50.28 E-value=11 Score=34.85 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.5
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+-|+ -|+|||||.+|+
T Consensus 21 p~g~~~lI~--G~pGsGKT~f~~ 41 (260)
T COG0467 21 PRGSVVLIT--GPPGTGKTIFAL 41 (260)
T ss_pred cCCcEEEEE--cCCCCcHHHHHH
Confidence 788888887 789999999987
No 302
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.17 E-value=12 Score=34.04 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=17.7
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+.+-+. -|||||||+|+-+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (251)
T PRK14251 28 EEKELTALI--GPSGCGKSTFLRC 49 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468887777 8999999998753
No 303
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.88 E-value=12 Score=35.36 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.9
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
..|+..-+. .|||||||+|.
T Consensus 63 ~~Ge~~~l~--G~nGsGKSTLl 82 (286)
T PRK14275 63 LSKYVTAII--GPSGCGKSTFL 82 (286)
T ss_pred cCCCEEEEE--CCCCCCHHHHH
Confidence 458888887 89999999986
No 304
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=49.75 E-value=12 Score=36.31 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=16.9
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.+|+..=|. .|||||||+|+.+
T Consensus 31 ~~Ge~~~iv--G~sGsGKSTLl~~ 52 (330)
T PRK15093 31 TEGEIRGLV--GESGSGKSLIAKA 52 (330)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 457776555 8999999999763
No 305
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=49.67 E-value=12 Score=33.74 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVP 318 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDD 318 (325)
=+.|+..-+. -|||||||+|+-+. ++..|. |..-|-+
T Consensus 45 i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~ 85 (224)
T cd03220 45 VPRGERIGLI--GRNGAGKSTLLRLLAGIYPPDSGT-VTVRGRV 85 (224)
T ss_pred EcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEE
Confidence 3468776666 89999999997533 444553 5544433
No 306
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=49.60 E-value=12 Score=40.06 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=27.3
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
.++=+.|+++-|+ -|||||||+|+=+. ++-.| +|..=|-||
T Consensus 501 sl~i~~Ge~vaIv--G~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i 545 (711)
T TIGR00958 501 TFTLHPGEVVALV--GPSGSGKSTVAALLQNLYQPTGG-QVLLDGVPL 545 (711)
T ss_pred eEEEcCCCEEEEE--CCCCCCHHHHHHHHHhccCCCCC-EEEECCEEH
Confidence 3555779998888 79999999987533 44445 344434333
No 307
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.53 E-value=12 Score=34.57 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCceEEEEeecCCccChhhhcccC-------C--CCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN-------P--TLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~-------p--~~pGwkv~~VGDDIA 320 (325)
..|+..-+. .|||||||+|.-+. | +..| +|..-|.|+.
T Consensus 45 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~ 91 (268)
T PRK14248 45 EKHAVTALI--GPSGCGKSTFLRSINRMNDLIPSARSEG-EILYEGLNIL 91 (268)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHhcccccCCCCCce-EEEECCEEcc
Confidence 458877777 89999999986322 2 3446 4666666653
No 308
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=49.43 E-value=19 Score=38.41 Aligned_cols=38 Identities=26% Similarity=0.223 Sum_probs=28.2
Q ss_pred eCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVP 318 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDD 318 (325)
.=.+|+..=+. -+||||||+||= |.|| .+=.+.+.|+|
T Consensus 313 ~l~~GE~lglV--GeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~ 354 (539)
T COG1123 313 DLREGETLGLV--GESGSGKSTLARILAGLLPP-SSGSIIFDGQD 354 (539)
T ss_pred EecCCCEEEEE--CCCCCCHHHHHHHHhCCCCC-CCceEEEeCcc
Confidence 33568887777 799999999873 3354 45568888987
No 309
>PLN02840 tRNA dimethylallyltransferase
Probab=49.41 E-value=11 Score=38.67 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=17.2
Q ss_pred ceEEEEeecCCccChhhhcccC
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+...|+-+-|+|||||.||...
T Consensus 20 ~~~vi~I~GptgsGKTtla~~L 41 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALEL 41 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3345677799999999999844
No 310
>PRK06290 aspartate aminotransferase; Provisional
Probab=49.41 E-value=76 Score=31.50 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=74.1
Q ss_pred cCHHHHHHHHHHHh----h--cCCC-eEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceE
Q psy13078 29 ISPKLKSFIDNCVE----L--CQPS-DVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTF 99 (325)
Q Consensus 29 l~~~v~~~V~e~a~----L--~~P~-~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTf 99 (325)
-.+++++.|++... + +.|+ +|.+..|+++=...+.+.+.+.|..+-+. .|++ ....++....+.
T Consensus 82 G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~-------~~~~~~~~g~~v 154 (410)
T PRK06290 82 GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPV-------TGTHTKYYGGEV 154 (410)
T ss_pred CcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCcc-------HHHHHHHcCCEE
Confidence 35677777777653 2 7887 79999999999988888888887544332 2322 234455555555
Q ss_pred EEcCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEE-ecccCCCCCCCCc------------ce-
Q psy13078 100 ICTQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVI-PFSMGPVGSPLSK------------IG- 164 (325)
Q Consensus 100 I~t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyVi-PfsmGPigsp~s~------------~G- 164 (325)
+-.+-.++ ++| ++.+++.+.+.+ +-|-.|+. | --|.|.-++. .+
T Consensus 155 ~~v~~~~~-------------~~~~~d~~~l~~~~~~------~~k~i~l~nP--~NPTG~v~s~e~l~~l~~la~~~~~ 213 (410)
T PRK06290 155 YNLPLLEE-------------NNFLPDLDSIPKDIKE------KAKLLYLNYP--NNPTGAVATKEFYEEVVDFAKENNI 213 (410)
T ss_pred EEEecCCC-------------cCCcCCHHHHHHhhcc------cceEEEEECC--CCCCCcCCCHHHHHHHHHHHHHcCe
Confidence 44433221 134 367777666643 23667777 4 5888888773 12
Q ss_pred eeccCchhHHh
Q psy13078 165 VEITDSPYVVG 175 (325)
Q Consensus 165 VqlTDS~YVv~ 175 (325)
+=|.|..|.-.
T Consensus 214 ~iI~DEaY~~~ 224 (410)
T PRK06290 214 IVVQDAAYAAL 224 (410)
T ss_pred EEEEecchhhc
Confidence 46677777744
No 311
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=49.37 E-value=13 Score=34.29 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.2
Q ss_pred EEEeecCCccChhhh
Q psy13078 286 YIAAAFPSACGKTNL 300 (325)
Q Consensus 286 yiaaAFPSaCGKTnl 300 (325)
+.+-.-|+|||||||
T Consensus 24 ~~~i~G~NGsGKStl 38 (247)
T cd03275 24 FTCIIGPNGSGKSNL 38 (247)
T ss_pred eEEEECCCCCCHHHH
Confidence 444558999999999
No 312
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=49.34 E-value=12 Score=35.26 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=24.1
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++|+.+-|. .|||||||+|.=+ .++..| +|.+-|-+|
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~i 71 (286)
T PRK13646 31 EQGKYYAIV--GQTGSGKSTLIQNINALLKPTTG-TVTVDDITI 71 (286)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEC
Confidence 458777666 8999999998632 244445 355545444
No 313
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=49.21 E-value=13 Score=32.94 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=25.4
Q ss_pred CCCceEEEEeecCCccChhhhcc----c--CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----L--NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l--~p~~pGwkv~~VGDDIA 320 (325)
..|+..-+. .|||||||+|.= + .++..| +|.+=|.+++
T Consensus 24 ~~Ge~~~i~--G~nGsGKStLl~~l~G~~~~~p~~G-~i~~~g~~~~ 67 (200)
T cd03217 24 KKGEVHALM--GPNGSGKSTLAKTIMGHPKYEVTEG-EILFKGEDIT 67 (200)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHHHhCCCcCCCCcc-EEEECCEECC
Confidence 347777676 899999998643 2 133456 5777677765
No 314
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.15 E-value=13 Score=34.28 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=18.0
Q ss_pred eCCCCceEEEEeecCCccChhhhccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+=+.|+.+-|. -|||||||+|.-+
T Consensus 34 ~i~~Ge~~~i~--G~nGsGKSTLl~~ 57 (258)
T PRK14268 34 QIPKNSVTALI--GPSGCGKSTFIRC 57 (258)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 33468776666 8999999999753
No 315
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=49.11 E-value=10 Score=36.95 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=27.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
++=.+|+..-|. .|||||||.|+.+ .++..| +|.+=|.||.
T Consensus 42 l~i~~Ge~~~lv--G~sGsGKSTLlk~i~Gl~~p~~G-~I~~~G~~i~ 86 (331)
T PRK15079 42 LRLYEGETLGVV--GESGCGKSTFARAIIGLVKATDG-EVAWLGKDLL 86 (331)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHHCCCCCCCc-EEEECCEECC
Confidence 333568877776 8999999998763 244455 4666676664
No 316
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=49.08 E-value=13 Score=32.72 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.4
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++-.++. .|+|||||.||..
T Consensus 38 ~~~lll~--G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLW--GESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 5667888 5999999999865
No 317
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=49.04 E-value=12 Score=35.33 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
+.|+.+=|. .|||||||+|.= +.++..| .|.+=|.||.
T Consensus 31 ~~Ge~~~i~--G~nGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~ 72 (287)
T PRK13637 31 EDGEFVGLI--GHTGSGKSTLIQHLNGLLKPTSG-KIIIDGVDIT 72 (287)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHhcCCCCCcc-EEEECCEECC
Confidence 468777666 899999999852 2244456 4666665654
No 318
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.81 E-value=13 Score=33.76 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=24.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCC-----CCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTL-----PGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~-----pGwkv~~VGDDIA 320 (325)
..|+..-+. .|||||||+|.-+. ++. .| +|.+=|.+|.
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~ 74 (252)
T PRK14272 28 QRGTVNALI--GPSGCGKTTFLRAINRMHDLTPGARVTG-RILLDGQDIY 74 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhccCCCCcCCCCce-eEEECCEEcc
Confidence 358776666 89999999997533 221 36 3666566654
No 319
>CHL00195 ycf46 Ycf46; Provisional
Probab=48.50 E-value=13 Score=38.70 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=23.0
Q ss_pred HHhhhhhceeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 269 AEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 269 AEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+++.--.|+..|+|--.| .|+|||||.+|=..
T Consensus 248 ~~~~~~~gl~~pkGILL~----GPpGTGKTllAkai 279 (489)
T CHL00195 248 SKQASNYGLPTPRGLLLV----GIQGTGKSLTAKAI 279 (489)
T ss_pred hHHHHhcCCCCCceEEEE----CCCCCcHHHHHHHH
Confidence 444555688888874444 89999999987543
No 320
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.37 E-value=14 Score=33.76 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=27.5
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CC-----CCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PT-----LPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~-----~pGwkv~~VGDDIA 320 (325)
+=+.|+.+.++ .|||+|||+|+-+. ++ ..| +|..=|.||+
T Consensus 26 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~ 74 (251)
T PRK14270 26 PIYENKITALI--GPSGCGKSTFLRCLNRMNDLISNVKIEG-EVLLDGKNIY 74 (251)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHHhccCcccCCCCcc-EEEECCEecc
Confidence 33568888888 89999999997532 21 236 5777676664
No 321
>PRK06348 aspartate aminotransferase; Provisional
Probab=48.15 E-value=1.1e+02 Score=29.49 Aligned_cols=45 Identities=7% Similarity=-0.037 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc
Q psy13078 31 PKLKSFIDNCVE-----LCQPSDVHICDGSEREYKELIDLMVKDKTLRPV 75 (325)
Q Consensus 31 ~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L 75 (325)
+++++.|++... -++|++|.+.+|+.+=...+...+++.|..+-+
T Consensus 69 ~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv 118 (384)
T PRK06348 69 VELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVII 118 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEE
Confidence 567777777663 379999999999999888888888877754433
No 322
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=48.11 E-value=12 Score=39.34 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=27.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
++=++|+.+-+. -|||||||+|+= +.++..| +|.+=|.||.
T Consensus 345 ~~i~~Ge~~~lv--G~nGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~i~ 389 (623)
T PRK10261 345 FDLWPGETLSLV--GESGSGKSTTGRALLRLVESQGG-EIIFNGQRID 389 (623)
T ss_pred eEEcCCCEEEEE--CCCCCCHHHHHHHHHcCCCCCCc-EEEECCEECC
Confidence 444678888887 899999999864 2244445 3666566653
No 323
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.10 E-value=13 Score=34.80 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.1
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+.+-|. .|||||||+|+-+
T Consensus 45 ~~Ge~~~I~--G~nGsGKSTLl~~ 66 (276)
T PRK14271 45 PARAVTSLM--GPTGSGKTTFLRT 66 (276)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468888787 8999999998753
No 324
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=48.08 E-value=12 Score=37.62 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.0
Q ss_pred CCCCceEEEEeecCCccChhhhcc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
=+.|+.+.+. -|||||||+|.-
T Consensus 283 i~~Ge~~~i~--G~NGsGKSTLl~ 304 (490)
T PRK10938 283 VNPGEHWQIV--GPNGAGKSTLLS 304 (490)
T ss_pred EcCCCEEEEE--CCCCCCHHHHHH
Confidence 3468888888 799999999963
No 325
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.96 E-value=13 Score=34.93 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=26.3
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
..|+.+-|. .|||||||+|.= +.++..| +|.+=|.||.
T Consensus 31 ~~Ge~~~i~--G~nGaGKSTLl~~i~G~~~p~~G-~i~~~g~~i~ 72 (279)
T PRK13635 31 YEGEWVAIV--GHNGSGKSTLAKLLNGLLLPEAG-TITVGGMVLS 72 (279)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECC
Confidence 458876666 899999999852 2255567 4666666664
No 326
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.92 E-value=13 Score=35.45 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=23.9
Q ss_pred CceEEEEeecCCccChhhhcccCCC-C--C-C-ceEEEecccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNPT-L--P-G-YKVECVGVPY 319 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p~-~--p-G-wkv~~VGDDI 319 (325)
++..-|+ -|+|+|||+|+.-.-. + - | ++|-+|--|-
T Consensus 194 ~~vi~~v--GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALV--GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEE--CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4444444 7999999998763322 2 2 4 9999887664
No 327
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=47.88 E-value=13 Score=36.68 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=25.9
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
+.|+..-+. -|||||||+|.-+ .++..| +|.+=|.|+.
T Consensus 26 ~~Ge~~~ll--GpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~ 67 (353)
T PRK10851 26 PSGQMVALL--GPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVS 67 (353)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECC
Confidence 457765555 8999999998642 345566 3666676764
No 328
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=47.74 E-value=7.8 Score=34.89 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=13.3
Q ss_pred EEEeecCCccChhhhccc
Q psy13078 286 YIAAAFPSACGKTNLAML 303 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl 303 (325)
.++---|+|+|||||.-.
T Consensus 24 ~~~i~G~NGsGKTTLl~a 41 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEA 41 (204)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 444458999999998643
No 329
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=47.70 E-value=14 Score=32.67 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=25.2
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. -|||||||+|.-+ .|+..| +|..-|.|+
T Consensus 22 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 64 (201)
T cd03231 22 TLAAGEALQVT--GPNGSGKTTLLRILAGLSPPLAG-RVLLNGGPL 64 (201)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEec
Confidence 33568877777 8999999998532 234444 455555554
No 330
>PRK05942 aspartate aminotransferase; Provisional
Probab=47.67 E-value=62 Score=31.39 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHh----h-cCCC-eEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEEc
Q psy13078 31 PKLKSFIDNCVE----L-CQPS-DVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 31 ~~v~~~V~e~a~----L-~~P~-~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
+++++.|++... + ++|+ .|.+++|+.+=...+...+++.|..+-+ +.|++.+.. ++.-....+-.
T Consensus 76 ~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~-------~~~~g~~~~~v 148 (394)
T PRK05942 76 ASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRG-------PLIAGAQIYPI 148 (394)
T ss_pred HHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH-------HHHcCCEEEEe
Confidence 455555555442 2 6898 5899999999999998888888854443 345543221 11111222111
Q ss_pred CCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEE-ecccCCCCCCCC
Q psy13078 103 QEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVI-PFSMGPVGSPLS 161 (325)
Q Consensus 103 ~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyVi-PfsmGPigsp~s 161 (325)
+-..+ ++| ++++++++.+.+ +=|-+|+. | -=|.|.-++
T Consensus 149 ~~~~~-------------~~~~~d~~~l~~~~~~------~~k~i~l~~P--~NPtG~~~s 188 (394)
T PRK05942 149 ILKPE-------------NDWLIDLSSIPEEVAQ------QAKILYFNYP--SNPTTATAP 188 (394)
T ss_pred ecCCc-------------cCCccCHHHHHHhccc------cceEEEEcCC--CCCCCCcCC
Confidence 11111 134 778888777653 33556665 5 558888776
No 331
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=47.65 E-value=11 Score=35.09 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=14.4
Q ss_pred EEEEeecCCccChhhhcccC
Q psy13078 285 KYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~ 304 (325)
.++. -|+|||||.||...
T Consensus 33 ~ll~--Gp~G~GKT~la~~i 50 (305)
T TIGR00635 33 LLLY--GPPGLGKTTLAHII 50 (305)
T ss_pred EEEE--CCCCCCHHHHHHHH
Confidence 5555 89999999999744
No 332
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=47.53 E-value=13 Score=37.80 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=25.7
Q ss_pred eCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
+=++|+.+-+. -|||||||+|.= +.++..|. |.+=|.||
T Consensus 27 ~i~~Ge~~~li--G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i 69 (510)
T PRK09700 27 TVYPGEIHALL--GENGAGKSTLMKVLSGIHEPTKGT-ITINNINY 69 (510)
T ss_pred EEcCCcEEEEE--CCCCCCHHHHHHHHcCCcCCCccE-EEECCEEC
Confidence 33568887777 799999999852 23445564 55555554
No 333
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.23 E-value=14 Score=33.64 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=24.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----C---CCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----P---TLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p---~~pGwkv~~VGDDIA 320 (325)
..|+.+-++ -|||+|||+|.=+. + +..| +|.+=|.||.
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~~~~G-~i~~~g~~i~ 70 (246)
T PRK14269 26 EQNKITALI--GASGCGKSTFLRCFNRMNDKIAKIDG-LVEIEGKDVK 70 (246)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcccCCCCCCce-EEEECCEecc
Confidence 458777777 89999999986432 1 2345 4665565553
No 334
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=47.20 E-value=13 Score=37.74 Aligned_cols=24 Identities=33% Similarity=0.214 Sum_probs=18.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=..|+.+-+. -|||||||+|.-
T Consensus 21 ~~i~~Ge~~~ii--G~nGsGKSTLl~ 44 (520)
T TIGR03269 21 FTIEEGEVLGIL--GRSGAGKSVLMH 44 (520)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 333568887777 799999999864
No 335
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.16 E-value=14 Score=34.12 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CC-----CCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PT-----LPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~-----~pGwkv~~VGDDI 319 (325)
+.|+..-|+ -|||||||+|.=+. |+ ..| +|..-|.||
T Consensus 31 ~~Ge~~~I~--G~nGsGKSTLl~~l~Gl~~~~g~i~~~G-~i~~~g~~i 76 (261)
T PRK14258 31 YQSKVTAII--GPSGCGKSTFLKCLNRMNELESEVRVEG-RVEFFNQNI 76 (261)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhcccCCCCCccccc-eEEECCEEh
Confidence 457777666 89999999986422 32 245 577767665
No 336
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=47.10 E-value=14 Score=38.35 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=19.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=|.|+++-|. -|||||||+|+-+
T Consensus 361 ~~i~~G~~~aiv--G~sGsGKSTL~~l 385 (574)
T PRK11160 361 LQIKAGEKVALL--GRTGCGKSTLLQL 385 (574)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHH
Confidence 444678888888 7999999998754
No 337
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=47.07 E-value=14 Score=32.91 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
..|+..-+. -|||||||+|.- +.|+..|. |..-|.++
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~~~ 64 (223)
T TIGR03740 24 PKNSVYGLL--GPNGAGKSTLLKMITGILRPTSGE-IIFDGHPW 64 (223)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCceE-EEECCEec
Confidence 357776666 899999999853 23556673 44444333
No 338
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=46.95 E-value=11 Score=37.26 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=16.0
Q ss_pred EEEEeecCCccChhhhcccC
Q psy13078 285 KYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~ 304 (325)
.-|..+-|||||||++|-..
T Consensus 93 ~iIlI~G~sgsGKStlA~~L 112 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFEL 112 (301)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 44677799999999998743
No 339
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=46.85 E-value=14 Score=34.23 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=17.6
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+.+-+. -|||||||+|.-+
T Consensus 43 ~~Ge~~~i~--G~nGsGKSTLl~~ 64 (267)
T PRK14235 43 PEKTVTAFI--GPSGCGKSTFLRC 64 (267)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458877776 8999999999754
No 340
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.75 E-value=14 Score=35.87 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=23.1
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VG 316 (325)
+.|+.+-|. -|||||||+|.-+. ++..| +|.+=|
T Consensus 50 ~~Ge~~~I~--G~nGsGKSTLl~~L~Gl~~p~~G-~I~i~g 87 (320)
T PRK13631 50 EKNKIYFII--GNSGSGKSTLVTHFNGLIKSKYG-TIQVGD 87 (320)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCC-eEEECC
Confidence 468777776 89999999997543 34445 455444
No 341
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=46.49 E-value=15 Score=33.36 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=17.3
Q ss_pred eeCCCCceEEEEeecCCccChhhh
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnl 300 (325)
++..+|+..-++ -||+||||.+
T Consensus 24 ~~~~~~~~~~l~--G~n~~GKstl 45 (204)
T cd03282 24 LTRGSSRFHIIT--GPNMSGKSTY 45 (204)
T ss_pred EeeCCCcEEEEE--CCCCCCHHHH
Confidence 345567777777 8999999995
No 342
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.38 E-value=14 Score=34.24 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=27.7
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCC----CCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTL----PGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~----pGwkv~~VGDDIA 320 (325)
+=+.|+.+-|. -|||||||+|.=+. ++. -.-+|..-|.||.
T Consensus 30 ~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 30 PIRKNEITGFI--GPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 33568887777 89999999986432 221 1347887777764
No 343
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=46.37 E-value=5.9 Score=39.80 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=27.1
Q ss_pred HhhhhhceeCCCCceEEEEeecCCccChhhhcccCC---CCCCceEEEe
Q psy13078 270 EHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECV 315 (325)
Q Consensus 270 EHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~V 315 (325)
|+|-|+.|.|.+| |+|||++|.-.. ..-|+||=+|
T Consensus 119 ~~~~vIav~n~KG-----------GvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 119 EHLQVIAVTNFKG-----------GSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CCceEEEEEcCCC-----------CCCHHHHHHHHHHHHHhcCCceEEE
Confidence 7888888888887 899999776332 2469998777
No 344
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.12 E-value=14 Score=34.91 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
=++|+..-|. -|||||||+|+-+. ++..| +|.+=|-+|
T Consensus 29 i~~Ge~v~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i 70 (288)
T PRK13643 29 VKKGSYTALI--GHTGSGKSTLLQHLNGLLQPTEG-KVTVGDIVV 70 (288)
T ss_pred EcCCCEEEEE--CCCCChHHHHHHHHhcCCCCCCc-EEEECCEEC
Confidence 3567766665 89999999986532 33345 344444444
No 345
>PLN02748 tRNA dimethylallyltransferase
Probab=46.11 E-value=13 Score=38.80 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=22.4
Q ss_pred CCCceEEEEeecCCccChhhhcccCCCCCCceEEEeccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVP 318 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDD 318 (325)
++++...| +.|+|+|||.||......-+ .++|+=|
T Consensus 20 ~~~~~i~i--~GptgsGKs~la~~la~~~~--~eii~~D 54 (468)
T PLN02748 20 GKAKVVVV--MGPTGSGKSKLAVDLASHFP--VEIINAD 54 (468)
T ss_pred CCCCEEEE--ECCCCCCHHHHHHHHHHhcC--eeEEcCc
Confidence 34555555 47999999999985443222 3666555
No 346
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=46.01 E-value=14 Score=39.12 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=20.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++=|.|++.-|+ -|||||||+|+-+.
T Consensus 478 l~i~~G~~vaiv--G~sGsGKSTL~~ll 503 (694)
T TIGR01846 478 LDIKPGEFIGIV--GPSGSGKSTLTKLL 503 (694)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHH
Confidence 334568888888 79999999998643
No 347
>PLN02772 guanylate kinase
Probab=45.97 E-value=15 Score=37.72 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=12.7
Q ss_pred EEEEeecCCccChhhhc
Q psy13078 285 KYIAAAFPSACGKTNLA 301 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlA 301 (325)
+-+.-+-|||+||++|.
T Consensus 136 k~iVlsGPSGvGKsTL~ 152 (398)
T PLN02772 136 KPIVISGPSGVGKGTLI 152 (398)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34444589999999975
No 348
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=45.44 E-value=15 Score=34.31 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=25.2
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
..|+..-+. .|||||||+|.-+. |+..| +|.+=|-++
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~ 66 (275)
T PRK13639 26 EKGEMVALL--GPNGAGKSTLFLHFNGILKPTSG-EVLIKGEPI 66 (275)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEC
Confidence 458887777 89999999986533 44455 455555554
No 349
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=45.30 E-value=14 Score=37.82 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=18.7
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+|..-|.| ..+. -|+|||||.||-..
T Consensus 83 ~g~~~~~g--iLL~--GppGtGKT~la~al 108 (495)
T TIGR01241 83 LGAKIPKG--VLLV--GPPGTGKTLLAKAV 108 (495)
T ss_pred cCCCCCCc--EEEE--CCCCCCHHHHHHHH
Confidence 36666766 4454 89999999997543
No 350
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=45.28 E-value=15 Score=37.45 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=23.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEE
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVEC 314 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~ 314 (325)
++=++|+.+-+. -|||||||+|.-+. |+..|. |.+
T Consensus 305 ~~i~~Ge~~~l~--G~NGsGKSTLl~~l~Gl~~p~~G~-i~~ 343 (520)
T TIGR03269 305 LEVKEGEIFGIV--GTSGAGKTTLSKIIAGVLEPTSGE-VNV 343 (520)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCeE-EEE
Confidence 334568888777 79999999986432 445563 443
No 351
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.24 E-value=16 Score=33.17 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.3
Q ss_pred CCCceEEEEeecCCccChhhhcccC
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
..|+..-+. -|||||||+|.-+.
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~~l 51 (252)
T PRK14255 29 NQNEITALI--GPSGCGKSTYLRTL 51 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 458887777 89999999997543
No 352
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=45.01 E-value=22 Score=35.83 Aligned_cols=31 Identities=29% Similarity=0.178 Sum_probs=21.3
Q ss_pred ceEEEEeecCCccChhhhcccCCC-----CCCceEEEe
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLNPT-----LPGYKVECV 315 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~p~-----~pGwkv~~V 315 (325)
.-.|+. .|+|||||-||...-. -||.+|..+
T Consensus 149 ~~l~l~--G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 149 NPLFIY--GGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CeEEEE--CCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 347787 7999999999764321 256766654
No 353
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=44.92 E-value=15 Score=34.94 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=26.0
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
+.|+.+-+. .|+|||||+|.= +.++..| +|.+-|.|++
T Consensus 26 ~~Gei~~l~--G~NGaGKTTLl~~l~Gl~~~~~G-~i~i~g~~~~ 67 (301)
T TIGR03522 26 QKGRIVGFL--GPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVL 67 (301)
T ss_pred eCCeEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcc
Confidence 568877666 899999999853 2244566 3666666654
No 354
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.91 E-value=16 Score=35.70 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=26.0
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----C-----CCCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----P-----TLPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p-----~~pGwkv~~VGDDIA 320 (325)
+=+.|+.+=|+ .|||||||+|.-+. + +..| .|.+=|.||.
T Consensus 104 ~I~~Ge~v~Iv--G~~GsGKSTLl~~L~g~~~~~~~~p~~G-~I~idG~~i~ 152 (329)
T PRK14257 104 DIKRNKVTAFI--GPSGCGKSTFLRNLNQLNDLIEGTSHEG-EIYFLGTNTR 152 (329)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcc
Confidence 33568776555 89999999986432 1 1245 4666666664
No 355
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=44.85 E-value=92 Score=29.80 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH----h-hcCCCeEEEEcCCHHHHHHHHHHHHhcCcc
Q psy13078 31 PKLKSFIDNCV----E-LCQPSDVHICDGSEREYKELIDLMVKDKTL 72 (325)
Q Consensus 31 ~~v~~~V~e~a----~-L~~P~~I~icdGS~eE~~~l~~~l~~~G~~ 72 (325)
+++++.|++.. . -+.|++|++..|+.+=...+.+.+.+.|..
T Consensus 68 ~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~ 114 (368)
T PRK03317 68 VALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRT 114 (368)
T ss_pred HHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCE
Confidence 45666666654 3 379999999999999999999999888743
No 356
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=44.83 E-value=15 Score=37.31 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=26.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|.=+. ++..| +|..=|.++
T Consensus 284 l~i~~Ge~~~l~--G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~~ 327 (510)
T PRK09700 284 FSVCRGEILGFA--GLVGSGRTELMNCLFGVDKRAGG-EIRLNGKDI 327 (510)
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHHHhCCCcCCCC-eEEECCEEC
Confidence 334568888887 79999999986422 33445 455555554
No 357
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.42 E-value=18 Score=32.69 Aligned_cols=38 Identities=32% Similarity=0.408 Sum_probs=26.2
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
..|+.+-++ .|||||||+|.-+ .++..| +|..-|.++.
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~ 65 (232)
T cd03300 24 KEGEFFTLL--GPSGCGKTTLLRLIAGFETPTSG-EILLDGKDIT 65 (232)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcC
Confidence 358888887 8999999998542 244456 4666565553
No 358
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=44.17 E-value=16 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=14.6
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
.+..+++ -|.|||||+||=
T Consensus 78 r~il~L~--GPPGsGKStla~ 96 (361)
T smart00763 78 KQILYLL--GPVGGGKSSLVE 96 (361)
T ss_pred CcEEEEE--CCCCCCHHHHHH
Confidence 4444555 899999999985
No 359
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.14 E-value=15 Score=32.58 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=19.7
Q ss_pred EEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 286 YIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
.++-..|||||||+|+-+. ++..| +|..=|-++
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~ 61 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPDGG-TIVLNGTVL 61 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEec
Confidence 3444489999999987532 44445 344444443
No 360
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.07 E-value=17 Score=33.52 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=18.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=..|+.+-+. -|||||||+|.=
T Consensus 28 l~i~~Ge~~~l~--G~nGsGKSTLlk 51 (259)
T PRK14260 28 MDIYRNKVTAII--GPSGCGKSTFIK 51 (259)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 333458888777 799999999864
No 361
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=44.05 E-value=20 Score=36.48 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=20.5
Q ss_pred EEEEeecCCccChhhhcccCC-----CCCCceEEEe
Q psy13078 285 KYIAAAFPSACGKTNLAMLNP-----TLPGYKVECV 315 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~p-----~~pGwkv~~V 315 (325)
.|+. .|+|||||-||-... ..|+.+|-.+
T Consensus 133 l~ly--G~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 133 LFIY--GGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred EEEE--cCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 7888 599999999976322 1367777664
No 362
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=43.92 E-value=25 Score=35.91 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=42.3
Q ss_pred hhcchhHHhhhhhceeC-----CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccccc
Q psy13078 263 KREGWLAEHMLILGITN-----PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 263 r~EGWLAEHMlIlgit~-----P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA~ 321 (325)
-+.-=|+++.+.+|+.| ++|+..-|- -=|||||++|.= |.+|..| ||.+=|+||+.
T Consensus 30 ~k~ei~~~tg~vvGv~~~sl~v~~GeIfViM--GLSGSGKSTLvR~~NrLiept~G-~ilv~g~di~~ 94 (386)
T COG4175 30 SKAEILKKTGLVVGVNDASLDVEEGEIFVIM--GLSGSGKSTLVRLLNRLIEPTRG-EILVDGKDIAK 94 (386)
T ss_pred cHHHHHHhhCcEEeeccceeeecCCeEEEEE--ecCCCCHHHHHHHHhccCCCCCc-eEEECCcchhc
Confidence 34557999999999887 668776666 569999999864 3344455 58888999875
No 363
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=43.81 E-value=15 Score=34.57 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=23.7
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccC----CCCCCc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGY 310 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGw 310 (325)
.++=+.|+..-+. .|+|||||+|.-+. |+..|.
T Consensus 44 s~~i~~Ge~~~li--G~NGsGKSTLlk~L~Gl~~p~~G~ 80 (264)
T PRK13546 44 SLKAYEGDVIGLV--GINGSGKSTLSNIIGGSLSPTVGK 80 (264)
T ss_pred EEEEcCCCEEEEE--CCCCCCHHHHHHHHhCCcCCCceE
Confidence 3444568887777 89999999997643 555674
No 364
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=43.72 E-value=16 Score=35.13 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=16.3
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.+|+..-|. -|||||||+|+=
T Consensus 31 ~~Ge~v~ii--G~nGsGKSTLl~ 51 (305)
T PRK13651 31 NQGEFIAII--GQTGSGKTTFIE 51 (305)
T ss_pred eCCCEEEEE--CCCCCcHHHHHH
Confidence 457766666 899999999864
No 365
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=43.60 E-value=14 Score=35.95 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=18.8
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+=|. -|.++|||++||-
T Consensus 58 ~~g~ItEiy--G~~gsGKT~lal~ 79 (279)
T COG0468 58 PRGRITEIY--GPESSGKTTLALQ 79 (279)
T ss_pred ccceEEEEe--cCCCcchhhHHHH
Confidence 679998888 6778899999984
No 366
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=43.59 E-value=13 Score=38.12 Aligned_cols=45 Identities=36% Similarity=0.450 Sum_probs=25.0
Q ss_pred hhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 246 SLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 246 aLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
-|.|++- |=|.|-.+. -|.=-| .=.||-.-++ -|+|||||-|||-
T Consensus 25 GlVGQ~~-AReAagiiv--------~mIk~~--K~aGr~iLia--GppGtGKTAlA~~ 69 (398)
T PF06068_consen 25 GLVGQEK-AREAAGIIV--------DMIKEG--KIAGRAILIA--GPPGTGKTALAMA 69 (398)
T ss_dssp TEES-HH-HHHHHHHHH--------HHHHTT----TT-EEEEE--E-TTSSHHHHHHH
T ss_pred cccChHH-HHHHHHHHH--------HHHhcc--cccCcEEEEe--CCCCCCchHHHHH
Confidence 4788866 444444433 222111 1237777776 7999999999994
No 367
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.59 E-value=17 Score=34.02 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=17.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
++=+.|+..-|. .|||||||+|+
T Consensus 25 l~i~~Ge~~~i~--G~NGsGKSTLl 47 (277)
T PRK13652 25 FIAPRNSRIAVI--GPNGAGKSTLF 47 (277)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHH
Confidence 333568887777 89999999985
No 368
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.17 E-value=18 Score=33.42 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.5
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
..|+.+-|. .|||||||+|.-
T Consensus 40 ~~Ge~~~i~--G~nGsGKSTLl~ 60 (265)
T PRK14252 40 HEKQVTALI--GPSGCGKSTFLR 60 (265)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 358888887 799999999974
No 369
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=43.11 E-value=66 Score=25.94 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=36.7
Q ss_pred cCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCC----CCCcEEecc
Q psy13078 29 ISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPK----YENCWLART 86 (325)
Q Consensus 29 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~----~~n~~l~rs 86 (325)
+-.++-+|+-+-.+.+ .|.+|+..+-++|++.|-+..... .++||+.+-
T Consensus 31 ~GsdlVdWL~~~~~~~---------~~R~eAv~~g~~Ll~~G~i~HV~~~h~F~d~~yy~~~ 83 (84)
T cd04438 31 IGSDLVDWLLSHVEGL---------TDRREARKYASSLLKLGYIRHTVNKITFSEQCYYVFG 83 (84)
T ss_pred cchHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHCCcEEecCCCccccCCeEEecC
Confidence 3456778887765422 389999999999999999988742 467777654
No 370
>PRK07681 aspartate aminotransferase; Provisional
Probab=43.06 E-value=1.5e+02 Score=28.77 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHh-----hcCC-CeEEEEcCCHHHHHHHHHHHHhcCccccc
Q psy13078 30 SPKLKSFIDNCVE-----LCQP-SDVHICDGSEREYKELIDLMVKDKTLRPV 75 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L~~P-~~I~icdGS~eE~~~l~~~l~~~G~~~~L 75 (325)
.+++++.|++... -+.| ++|++..|+.+=...+...+++.|..+-+
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv 122 (399)
T PRK07681 71 IQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILV 122 (399)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEE
Confidence 4556666665543 2788 89999999999999988888888854444
No 371
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=42.91 E-value=16 Score=31.10 Aligned_cols=25 Identities=32% Similarity=0.281 Sum_probs=16.9
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
||++..+++. +-.-|+++|||+|.-
T Consensus 13 ~~~~~~~~ki---~ilG~~~~GKStLi~ 37 (190)
T cd00879 13 LGLYNKEAKI---LFLGLDNAGKTTLLH 37 (190)
T ss_pred hhcccCCCEE---EEECCCCCCHHHHHH
Confidence 4666544433 334699999999975
No 372
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=42.80 E-value=31 Score=30.30 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=21.9
Q ss_pred CCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGV 317 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGD 317 (325)
-..|+..-|+ -|+|||||+|+- +.| |..++-++-|
T Consensus 22 v~~g~~i~I~--G~tGSGKTTll~aL~~~i~--~~~~~i~ied 60 (186)
T cd01130 22 VEARKNILIS--GGTGSGKTTLLNALLAFIP--PDERIITIED 60 (186)
T ss_pred HhCCCEEEEE--CCCCCCHHHHHHHHHhhcC--CCCCEEEECC
Confidence 3346666565 699999999743 223 4555555544
No 373
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=42.79 E-value=18 Score=34.53 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCCCceEEEEeecCCccChhhhccc----CCCCCC
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAML----NPTLPG 309 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pG 309 (325)
=+.|+..-+. .|||||||+|+-+ .|+..|
T Consensus 60 i~~Ge~~~li--G~NGsGKSTLl~~I~Gl~~p~~G 92 (282)
T cd03291 60 IEKGEMLAIT--GSTGSGKTSLLMLILGELEPSEG 92 (282)
T ss_pred EcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc
Confidence 3568888777 8999999999753 244455
No 374
>PLN03232 ABC transporter C family member; Provisional
Probab=42.70 E-value=14 Score=43.13 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=|.|+++-|+ .|||||||+|+.+
T Consensus 638 l~i~~Ge~vaIv--G~sGSGKSTLl~l 662 (1495)
T PLN03232 638 LEIPVGSLVAIV--GGTGEGKTSLISA 662 (1495)
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHH
Confidence 555789998888 8999999999764
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=42.67 E-value=17 Score=32.52 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.2
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|+.+=|. -|+|||||||.=+
T Consensus 28 ~~~~~i~--G~NGsGKSTll~~ 47 (213)
T cd03279 28 NGLFLIC--GPTGAGKSTILDA 47 (213)
T ss_pred cCEEEEE--CCCCCCHHHHHHH
Confidence 4454444 7999999999543
No 376
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.63 E-value=15 Score=37.78 Aligned_cols=35 Identities=11% Similarity=-0.056 Sum_probs=22.8
Q ss_pred CceEEEEeecCCccChhhhcccCCC---CCCceEEEeccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGVP 318 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~VGDD 318 (325)
|+.+-++ -|+|||||+|+--.-. .-|.+|-+|.-|
T Consensus 206 ~~ii~lv--GptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 206 HRIISLI--GQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred CeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5555555 5999999987542211 257888877655
No 377
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=42.58 E-value=18 Score=34.38 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=25.6
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. .|+|||||+|.-+. ++..| +|.+-|.|+
T Consensus 26 ~i~~Ge~~~l~--G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 68 (303)
T TIGR01288 26 TIARGECFGLL--GPNGAGKSTIARMLLGMISPDRG-KITVLGEPV 68 (303)
T ss_pred EEcCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 33568777777 89999999986432 44456 355555554
No 378
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=42.26 E-value=17 Score=37.09 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. -|||||||+|.-+. ++..| +|.+=|.++
T Consensus 35 ~~Ge~~~li--G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 75 (510)
T PRK15439 35 HAGEVHALL--GGNGAGKSTLMKIIAGIVPPDSG-TLEIGGNPC 75 (510)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 468887777 89999999996432 33334 355445444
No 379
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=42.22 E-value=14 Score=31.19 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.0
Q ss_pred eEEEEeecCCccChhhhc
Q psy13078 284 KKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlA 301 (325)
.+=|+| |+|+|||+++
T Consensus 21 ~~vi~G--~Ng~GKStil 36 (202)
T PF13476_consen 21 LNVIYG--PNGSGKSTIL 36 (202)
T ss_dssp EEEEEE--STTSSHHHHH
T ss_pred cEEEEC--CCCCCHHHHH
Confidence 444553 9999999985
No 380
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=42.18 E-value=17 Score=36.67 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=25.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.=+ .++..|. |.+=|.|+
T Consensus 19 ~~i~~Ge~~~li--G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~ 62 (491)
T PRK10982 19 LKVRPHSIHALM--GENGAGKSTLLKCLFGIYQKDSGS-ILFQGKEI 62 (491)
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHHHcCCCCCCceE-EEECCEEC
Confidence 333568877777 7999999999632 2444554 45555554
No 381
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.99 E-value=14 Score=31.34 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=33.6
Q ss_pred eEEEeCCCcch-hhhhhhhhhHHHHHhhhhhhcchhHHhhh
Q psy13078 234 EIVSYGSGYGG-NSLLGKKCFALRIGSTIAKREGWLAEHML 273 (325)
Q Consensus 234 ~I~S~gSgYGG-NaLLgKKcfALRiaS~~Ar~EGWLAEHMl 273 (325)
.+.-|||.--- ++|-||||+-.-++-.++.-|++|+|-..
T Consensus 43 LviV~G~sipnd~~l~GKkv~i~d~~~Av~~Pe~~Ls~A~a 83 (103)
T COG3925 43 LVIVFGSSIPNDSALNGKKVWIGDIERAVAHPELFLSEAKA 83 (103)
T ss_pred EEEEeccccCCCccccCceEEEecHHHHhhChHHHHHHHHh
Confidence 35667888766 78999999999999999999999999654
No 382
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=41.86 E-value=1.4e+02 Score=29.24 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHh-----------hcCCCeEEEEcCCHHHHHHHHHHHHhcCccc
Q psy13078 30 SPKLKSFIDNCVE-----------LCQPSDVHICDGSEREYKELIDLMVKDKTLR 73 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----------L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~ 73 (325)
.+++++.|++... -+.|++|.+..|+.+=...+.+.+.+.|..+
T Consensus 77 ~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~v 131 (412)
T PTZ00433 77 SPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNI 131 (412)
T ss_pred cHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEE
Confidence 4667777777654 2789999999999999999988888777433
No 383
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=41.80 E-value=18 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.6
Q ss_pred CCceEEEEeecCCccChhhh
Q psy13078 281 EGQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnl 300 (325)
+...++|. -|.|+||||+
T Consensus 23 ~~~~~~i~--G~NGsGKS~i 40 (220)
T PF02463_consen 23 SPGLNVIV--GPNGSGKSNI 40 (220)
T ss_dssp TSSEEEEE--ESTTSSHHHH
T ss_pred CCCCEEEE--cCCCCCHHHH
Confidence 44577777 7999999997
No 384
>PLN03025 replication factor C subunit; Provisional
Probab=41.78 E-value=17 Score=34.81 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=13.8
Q ss_pred EEEEeecCCccChhhhccc
Q psy13078 285 KYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl 303 (325)
.++. .|+|||||++|..
T Consensus 37 lll~--Gp~G~GKTtla~~ 53 (319)
T PLN03025 37 LILS--GPPGTGKTTSILA 53 (319)
T ss_pred EEEE--CCCCCCHHHHHHH
Confidence 4554 7999999999874
No 385
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=41.74 E-value=18 Score=35.69 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=25.6
Q ss_pred eCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
+=+.|+.+=|. .|||||||+|.- +.++..|- |.+=|-||.
T Consensus 27 ~i~~Gei~gIi--G~sGaGKSTLlr~I~gl~~p~~G~-I~i~G~~i~ 70 (343)
T TIGR02314 27 HVPAGQIYGVI--GASGAGKSTLIRCVNLLERPTSGS-VIVDGQDLT 70 (343)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCceE-EEECCEECC
Confidence 33567776666 899999999853 33444554 555555553
No 386
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=19 Score=38.59 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=18.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.+=|.|+++=+. -|||||||+|.=
T Consensus 342 ~t~~~g~~talv--G~SGaGKSTLl~ 365 (559)
T COG4988 342 LTIKAGQLTALV--GASGAGKSTLLN 365 (559)
T ss_pred eEecCCcEEEEE--CCCCCCHHHHHH
Confidence 445678888777 799999999853
No 387
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.65 E-value=19 Score=34.40 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=26.7
Q ss_pred CCCceEEEEeecCCccChhhhcccC-----C----CCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN-----P----TLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~-----p----~~pGwkv~~VGDDIA 320 (325)
..|+...|. .|||||||+|.-+. | +..| +|.+=|.+|.
T Consensus 69 ~~Ge~~~Iv--G~nGsGKSTLl~~L~Gl~~~~~~~p~~G-~I~i~g~~i~ 115 (305)
T PRK14264 69 PEKSVTALI--GPSGCGKSTFLRCLNRMNDRIKAARIDG-SVELDGQDIY 115 (305)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcc
Confidence 468888888 89999999997432 2 3456 4666666553
No 388
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=41.62 E-value=15 Score=38.64 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=19.1
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+=+.|+.+-+. -|||||||+|+.+.
T Consensus 38 ~v~~Ge~~~lv--G~nGsGKSTLl~~l 62 (623)
T PRK10261 38 SLQRGETLAIV--GESGSGKSVTALAL 62 (623)
T ss_pred EECCCCEEEEE--CCCCChHHHHHHHH
Confidence 33568877666 79999999998643
No 389
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=41.59 E-value=88 Score=31.08 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcC
Q psy13078 30 SPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDK 70 (325)
Q Consensus 30 ~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G 70 (325)
+.++++=+++.-....|+.|.+=.||+|=.+.|.+..++.|
T Consensus 59 ~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~g 99 (356)
T COG0079 59 YRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPG 99 (356)
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCC
Confidence 34566666666666889999999999999999999999997
No 390
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.58 E-value=18 Score=34.14 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=22.8
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
..|+..=|. .|||||||+|.-+ .++..| +|.+=|-+|
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i 71 (290)
T PRK13634 31 PSGSYVAII--GHTGSGKSTLLQHLNGLLQPTSG-TVTIGERVI 71 (290)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHhcCCCCCCc-EEEECCEEC
Confidence 457766665 8999999998642 244444 344444333
No 391
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=41.53 E-value=12 Score=34.90 Aligned_cols=32 Identities=28% Similarity=0.244 Sum_probs=20.7
Q ss_pred CceEEEEeecCCccChhhhcccCCCCCCceEEEe
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECV 315 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~V 315 (325)
|+-..+. -|+|||||.||...-..-|.++..+
T Consensus 21 g~~vLL~--G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 21 GYPVHLR--GPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred CCeEEEE--cCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4445555 6999999999986543335554433
No 392
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=41.44 E-value=11 Score=35.96 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=11.9
Q ss_pred EEeecCCccChhhhc
Q psy13078 287 IAAAFPSACGKTNLA 301 (325)
Q Consensus 287 iaaAFPSaCGKTnlA 301 (325)
+.=--|+|||||.+|
T Consensus 61 vll~G~pGTGKT~lA 75 (284)
T TIGR02880 61 MSFTGNPGTGKTTVA 75 (284)
T ss_pred EEEEcCCCCCHHHHH
Confidence 333379999999999
No 393
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=41.44 E-value=9.5 Score=39.55 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=16.1
Q ss_pred cCCccChhhhcccCCCCCCceEE
Q psy13078 291 FPSACGKTNLAMLNPTLPGYKVE 313 (325)
Q Consensus 291 FPSaCGKTnlAMl~p~~pGwkv~ 313 (325)
-|.|||||+||.+..-.-+..++
T Consensus 55 GPPG~GKTTlA~liA~~~~~~f~ 77 (436)
T COG2256 55 GPPGTGKTTLARLIAGTTNAAFE 77 (436)
T ss_pred CCCCCCHHHHHHHHHHhhCCceE
Confidence 58999999999986533333333
No 394
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.35 E-value=11 Score=36.24 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=19.6
Q ss_pred eEEEEeecCCccChhhhcccCCCCCCceEEE
Q psy13078 284 KKYIAAAFPSACGKTNLAMLNPTLPGYKVEC 314 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~ 314 (325)
..+|. -|+|||||.||....-.-||++..
T Consensus 53 ~~ll~--GppG~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 53 HVLLY--GPPGLGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred cEEEE--CCCCccHHHHHHHHHHHhCCCeEE
Confidence 34554 799999999998654444555443
No 395
>PRK08727 hypothetical protein; Validated
Probab=41.23 E-value=20 Score=32.99 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=19.7
Q ss_pred ceEEEEeecCCccChhhhcccCC---CCCCceEEEe
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECV 315 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~V 315 (325)
.-.|+. -|||||||-||-..- --.|.+|.++
T Consensus 42 ~~l~l~--G~~G~GKThL~~a~~~~~~~~~~~~~y~ 75 (233)
T PRK08727 42 DWLYLS--GPAGTGKTHLALALCAAAEQAGRSSAYL 75 (233)
T ss_pred CeEEEE--CCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 347777 689999998865321 1246666654
No 396
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=41.18 E-value=18 Score=36.59 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=24.4
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCC--CCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPT--LPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~--~pGwkv~~VGDDI 319 (325)
+=++|+.+-+. -|||||||+|.-+ .|+ ..|. |.+-|-+|
T Consensus 23 ~i~~Ge~~~li--G~nGsGKSTLl~~i~G~~~~~~~~G~-i~~~g~~~ 67 (500)
T TIGR02633 23 EVRPGECVGLC--GENGAGKSTLMKILSGVYPHGTWDGE-IYWSGSPL 67 (500)
T ss_pred EEeCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEEC
Confidence 33568777676 7999999998532 232 2343 55555554
No 397
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=41.16 E-value=16 Score=36.22 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=18.4
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+=|.+ |++||||+||+
T Consensus 51 p~G~ivEi~G--~~ssGKttLaL 71 (322)
T PF00154_consen 51 PRGRIVEIYG--PESSGKTTLAL 71 (322)
T ss_dssp ETTSEEEEEE--STTSSHHHHHH
T ss_pred ccCceEEEeC--CCCCchhhhHH
Confidence 7899998885 78999999986
No 398
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.15 E-value=19 Score=33.80 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=27.2
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
+=..|+..-+. .|||||||+|.-+. ++..| +|.+=|.|+
T Consensus 28 ~i~~Ge~~~i~--G~nGaGKSTLl~~i~Gl~~p~~G-~i~i~g~~~ 70 (283)
T PRK13636 28 NIKKGEVTAIL--GGNGAGKSTLFQNLNGILKPSSG-RILFDGKPI 70 (283)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCcc-EEEECCEEC
Confidence 33468887777 89999999986532 44556 466666665
No 399
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=41.09 E-value=19 Score=37.19 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.5
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
..|+.+-+. .|+|||||+|.-
T Consensus 346 ~~Ge~~~l~--G~NGsGKSTLl~ 366 (552)
T TIGR03719 346 PPGGIVGVI--GPNGAGKSTLFR 366 (552)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 458888888 799999999864
No 400
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=40.68 E-value=15 Score=39.43 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=18.3
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccCC
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLNP 305 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~p 305 (325)
|+..|.|- -+ --|+|||||.||-...
T Consensus 483 g~~~~~gi--LL--~GppGtGKT~lakalA 508 (733)
T TIGR01243 483 GIRPPKGV--LL--FGPPGTGKTLLAKAVA 508 (733)
T ss_pred CCCCCceE--EE--ECCCCCCHHHHHHHHH
Confidence 66667662 22 3899999999987543
No 401
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=40.62 E-value=20 Score=36.21 Aligned_cols=40 Identities=23% Similarity=0.134 Sum_probs=26.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.= +.++..|- |..-|.++
T Consensus 24 l~i~~Ge~~~li--G~nGsGKSTLl~~l~G~~~p~~G~-i~~~~~~~ 67 (490)
T PRK10938 24 LTLNAGDSWAFV--GANGSGKSALARALAGELPLLSGE-RQSQFSHI 67 (490)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhccCCCCCce-EEECCccc
Confidence 344568888888 799999999862 22445563 44435444
No 402
>PRK06526 transposase; Provisional
Probab=40.57 E-value=18 Score=34.26 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=21.5
Q ss_pred CceEEEEeecCCccChhhhcccCCC---CCCceEEEe
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECV 315 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~V 315 (325)
++-.++. .|+|||||-||.-... -.|++|.++
T Consensus 98 ~~nlll~--Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFL--GPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEE--eCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 3456777 5999999999873211 257777554
No 403
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=40.56 E-value=18 Score=36.93 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.9
Q ss_pred CCCceEEEEeecCCccChhhh
Q psy13078 280 PEGQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnl 300 (325)
..|+.+-|. -|||||||+|
T Consensus 33 ~~Ge~~~ii--G~nGsGKSTL 51 (529)
T PRK15134 33 EAGETLALV--GESGSGKSVT 51 (529)
T ss_pred eCCCEEEEE--CCCCCcHHHH
Confidence 458887777 7999999998
No 404
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=40.22 E-value=10 Score=37.55 Aligned_cols=77 Identities=19% Similarity=0.117 Sum_probs=44.0
Q ss_pred cCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhcee-CCCCceEEEEeecCCccChhhhcc-cCCC
Q psy13078 229 KPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGIT-NPEGQKKYIAAAFPSACGKTNLAM-LNPT 306 (325)
Q Consensus 229 ~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit-~P~G~~~yiaaAFPSaCGKTnlAM-l~p~ 306 (325)
..++..|-=|-|.+.-..++.+=- ..-+.-||++..+=|.. +=.|.=.-|+ -|||.||+.||. |.-
T Consensus 101 ~a~~~~ipll~t~~~t~~~i~~l~---------~~L~~~la~~~~iHg~~v~V~G~GvLi~--G~SG~GKSelALeLi~- 168 (308)
T PRK05428 101 AAKEAGIPLLRTPLSTTRLISKLT---------NYLDRKLAPRTSVHGVLVDIYGIGVLIT--GESGIGKSETALELIK- 168 (308)
T ss_pred HHHHcCCcEEEeCCcHHHHHHHHH---------HHHHHHhhhcceeeeEEEEECCEEEEEE--cCCCCCHHHHHHHHHH-
Confidence 444555555566665555543311 12233455554444421 2235556666 799999999887 322
Q ss_pred CCCceEEEeccccc
Q psy13078 307 LPGYKVECVGVPYK 320 (325)
Q Consensus 307 ~pGwkv~~VGDDIA 320 (325)
-|+ +.|+||..
T Consensus 169 -rGh--~LVaDD~v 179 (308)
T PRK05428 169 -RGH--RLVADDAV 179 (308)
T ss_pred -cCC--ceEecCeE
Confidence 377 79999974
No 405
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=40.13 E-value=19 Score=28.21 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=11.4
Q ss_pred EEEEeecCCccChhhhc
Q psy13078 285 KYIAAAFPSACGKTNLA 301 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlA 301 (325)
..|. .+++||||+|.
T Consensus 2 I~V~--G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVL--GDSGVGKTSLI 16 (119)
T ss_dssp EEEE--CSTTSSHHHHH
T ss_pred EEEE--CcCCCCHHHHH
Confidence 3444 58999999984
No 406
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=39.72 E-value=21 Score=36.86 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=19.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=++|+.+-+. .|+|||||+|.-
T Consensus 26 ~~i~~Ge~~~li--G~NGsGKSTLl~ 49 (552)
T TIGR03719 26 LSFFPGAKIGVL--GLNGAGKSTLLR 49 (552)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHH
Confidence 344678888888 799999999864
No 407
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=39.64 E-value=17 Score=38.30 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=17.9
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.|+..|.|-- +. -|+|||||.+|-
T Consensus 211 ~gl~~p~GIL--Ly--GPPGTGKT~LAK 234 (512)
T TIGR03689 211 YDLKPPKGVL--LY--GPPGCGKTLIAK 234 (512)
T ss_pred ccCCCCcceE--EE--CCCCCcHHHHHH
Confidence 4677787733 33 899999999885
No 408
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=39.61 E-value=18 Score=38.96 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=18.1
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+|+..|+| .++. -|+|||||.||-.
T Consensus 207 ~gi~~~~g--iLL~--GppGtGKT~lara 231 (733)
T TIGR01243 207 LGIEPPKG--VLLY--GPPGTGKTLLAKA 231 (733)
T ss_pred cCCCCCce--EEEE--CCCCCChHHHHHH
Confidence 46666655 5566 6999999999753
No 409
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=39.61 E-value=19 Score=36.46 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=25.5
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
+.|+.+-+. -|||||||+|.= +.++..|. |.+=|.||
T Consensus 28 ~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i 68 (501)
T PRK11288 28 RAGQVHALM--GENGAGKSTLLKILSGNYQPDAGS-ILIDGQEM 68 (501)
T ss_pred eCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEC
Confidence 468877777 799999999842 23555676 55555555
No 410
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=39.49 E-value=23 Score=31.31 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=15.5
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
..|+..=+. .|+|||||+|.
T Consensus 33 ~~Ge~~~l~--G~nGsGKStLl 52 (194)
T cd03213 33 KPGELTAIM--GPSGAGKSTLL 52 (194)
T ss_pred cCCcEEEEE--CCCCCCHHHHH
Confidence 357666666 89999999985
No 411
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=39.47 E-value=59 Score=29.21 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=39.8
Q ss_pred cccccCHHHHHHHHHHHhhcCCC--eEEEEcCCHHHHHHHHHHHHhcCcccccCCC----CCcEEeccCC
Q psy13078 25 YVSAISPKLKSFIDNCVELCQPS--DVHICDGSEREYKELIDLMVKDKTLRPVPKY----ENCWLARTNP 88 (325)
Q Consensus 25 ~~~~l~~~v~~~V~e~a~L~~P~--~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~----~n~~l~rsdp 88 (325)
|=--|+++++..+++.++++.-. +|++|+|..- +.+..+++.-.+..=.+++ -|-|.+.++.
T Consensus 93 DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~--~~~~~~ll~~~~~~f~p~h~~~L~n~f~~~~n~ 160 (162)
T PF10237_consen 93 DPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEM--EELIKKLLGLRMCDFQPEHPNNLSNEFRCYANY 160 (162)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHH--HHHHHHHhCeeEEeEEeccccCCcceeEeEecC
Confidence 33459999999999999998777 9999998554 5555555521111111233 3467766654
No 412
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.44 E-value=26 Score=33.47 Aligned_cols=35 Identities=14% Similarity=-0.056 Sum_probs=24.0
Q ss_pred ceEEEEeecCCccChhhhcccCC---CCCCceEEEecccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGVPY 319 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VGDDI 319 (325)
+..-++ -|.|||||+++--.- .--|+||-.|.=|.
T Consensus 73 ~vi~l~--G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 73 NVILFV--GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred eEEEEE--CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 344444 699999998654211 13599999998775
No 413
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=39.06 E-value=26 Score=34.27 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=23.0
Q ss_pred EEeecCCccChhhhcc--cC--CCCCCceEEEeccccc
Q psy13078 287 IAAAFPSACGKTNLAM--LN--PTLPGYKVECVGVPYK 320 (325)
Q Consensus 287 iaaAFPSaCGKTnlAM--l~--p~~pGwkv~~VGDDIA 320 (325)
|.-+-|+|||||+|.- +. +...+-+|-++.|.+-
T Consensus 125 ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 125 ILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh
Confidence 4445899999999853 22 3233567888888763
No 414
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=39.02 E-value=21 Score=37.69 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=17.6
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+.+-+. .|+|||||+|.-
T Consensus 27 ~~Ge~v~Lv--G~NGsGKSTLLr 47 (635)
T PRK11147 27 EDNERVCLV--GRNGAGKSTLMK 47 (635)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468888777 799999999974
No 415
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=38.99 E-value=21 Score=36.46 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=25.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|.-+ .| ..| +|..=|.||
T Consensus 307 l~i~~Ge~~~i~--G~nGsGKSTLlk~l~Gl~~-~~G-~i~~~g~~i 349 (529)
T PRK15134 307 FTLRPGETLGLV--GESGSGKSTTGLALLRLIN-SQG-EIWFDGQPL 349 (529)
T ss_pred eEEcCCCEEEEE--CCCCCCHHHHHHHHhCcCC-CCc-EEEECCEEc
Confidence 444568887777 8999999998542 23 345 455555554
No 416
>PRK08181 transposase; Validated
Probab=38.67 E-value=20 Score=34.44 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=23.6
Q ss_pred CceEEEEeecCCccChhhhcccCC---CCCCceEEEec
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG 316 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG 316 (325)
++-.++. .|+|||||-||...- .-.|++|.++-
T Consensus 106 ~~nlll~--Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLF--GPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEE--ecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 4456777 799999999987542 13688887653
No 417
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=38.63 E-value=18 Score=36.13 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=24.8
Q ss_pred CCceEEEEeecCCccChhhhccc----CCC-----CCCceEEEeccccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAML----NPT-----LPGYKVECVGVPYK 320 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl----~p~-----~pGwkv~~VGDDIA 320 (325)
+|+..=+. -=||||||.||+. .|. ..| +|.+=|.||-
T Consensus 30 ~GE~lgiV--GESGsGKS~~~~aim~llp~~~~~i~~G-~i~f~g~~l~ 75 (316)
T COG0444 30 KGEILGIV--GESGSGKSVLAKAIMGLLPKPNARIVGG-EILFDGKDLL 75 (316)
T ss_pred CCcEEEEE--cCCCCCHHHHHHHHHhccCCCCCeEeee-EEEECCcccc
Confidence 46665555 5799999999872 342 234 7777777764
No 418
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.61 E-value=22 Score=33.22 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=24.8
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
..|+..=|+ .|||||||+|.-+ .|+..| +|.+=|-||
T Consensus 31 ~~Ge~~~I~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i 71 (277)
T PRK13642 31 TKGEWVSII--GQNGSGKSTTARLIDGLFEEFEG-KVKIDGELL 71 (277)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHhcCCCCCCC-EEEECCEEC
Confidence 458776555 8999999998653 255566 455555554
No 419
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=38.53 E-value=1.9e+02 Score=28.15 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHh-----hcCCCeE--EEEcCCHHHHHHHHHHH--HhcCccccc--CCCCCcEEeccCCCcccccccce
Q psy13078 30 SPKLKSFIDNCVE-----LCQPSDV--HICDGSEREYKELIDLM--VKDKTLRPV--PKYENCWLARTNPADVARVESKT 98 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L~~P~~I--~icdGS~eE~~~l~~~l--~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rT 98 (325)
.+++++.|++... -+.|++| .|+.|+.+=...+.+.+ ++.|..+-+ +.|++. .++++.-.-+
T Consensus 71 ~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~-------~~~~~~~g~~ 143 (396)
T PRK09257 71 LAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNH-------RAIFEAAGLE 143 (396)
T ss_pred CHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccH-------HHHHHHcCCc
Confidence 4667777776642 1479987 99999999877777655 356643333 234332 3445544444
Q ss_pred EEEcCC-CCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcc------------e-
Q psy13078 99 FICTQE-KAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKI------------G- 164 (325)
Q Consensus 99 fI~t~~-~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~------------G- 164 (325)
.+-.+- .+| +.=++.+++.+.+.+. =..+.+||+|..-=|.|.-+|.- +
T Consensus 144 ~v~v~~~~~~-------------~~~~d~~~l~~~~~~~----~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~ 206 (396)
T PRK09257 144 VKTYPYYDAA-------------TKGLDFDAMLADLSQA----PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGL 206 (396)
T ss_pred EEEEeccccc-------------cCccCHHHHHHHHHhC----CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc
Confidence 443321 111 0125778887777642 12357888999999999887642 2
Q ss_pred eeccCchhHH
Q psy13078 165 VEITDSPYVV 174 (325)
Q Consensus 165 VqlTDS~YVv 174 (325)
+=|.|-+|--
T Consensus 207 ~ii~De~Y~~ 216 (396)
T PRK09257 207 IPFLDIAYQG 216 (396)
T ss_pred EEEEeccccc
Confidence 2466877764
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.51 E-value=26 Score=36.00 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=13.8
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
+|++. +---|+|||||+|.
T Consensus 190 ~g~vi--~lvGpnG~GKTTtl 208 (420)
T PRK14721 190 QGGVY--ALIGPTGVGKTTTT 208 (420)
T ss_pred CCcEE--EEECCCCCCHHHHH
Confidence 35444 44489999999986
No 421
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.47 E-value=19 Score=38.47 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=28.9
Q ss_pred hHHhhhhhceeC-CCCceEEEEeecCCccChhhhcc-cCCC----CCCceEEEecccc
Q psy13078 268 LAEHMLILGITN-PEGQKKYIAAAFPSACGKTNLAM-LNPT----LPGYKVECVGVPY 319 (325)
Q Consensus 268 LAEHMlIlgit~-P~G~~~yiaaAFPSaCGKTnlAM-l~p~----~pGwkv~~VGDDI 319 (325)
|+++.-+....- .+|+..-|+ -|+|||||+|+. |..- -.|.||-+|.-|.
T Consensus 335 L~~~l~v~~~~~l~~G~vIaLV--GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 335 LSKRLPVAPVDPLERGGVIALV--GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred HHHhcCcCccccccCCCEEEEE--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 455544433211 235555555 689999998863 2221 1368888887654
No 422
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=38.35 E-value=1.5e+02 Score=28.37 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCc
Q psy13078 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKT 71 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~ 71 (325)
.++++.+++...+-.|++|.+..||+|=...|.. +++.|.
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~~~g~ 95 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LLPRGR 95 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hcCCCe
Confidence 6889999998888888999999999987776654 566664
No 423
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=38.32 E-value=13 Score=34.75 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.0
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
.++. -|+|||||.||-
T Consensus 39 lll~--Gp~GtGKT~la~ 54 (337)
T PRK12402 39 LLVQ--GPPGSGKTAAVR 54 (337)
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4555 799999999984
No 424
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=38.18 E-value=20 Score=32.63 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=16.2
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.....|+--.++|+|||.||.-
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~ 38 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQ 38 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeee
Confidence 3445555558999999999963
No 425
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.13 E-value=23 Score=33.14 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=24.6
Q ss_pred CCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
+.|+..-|. .|+|||||+|.= +.++..|- |.+-|.++
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~ 66 (274)
T PRK13644 26 KKGEYIGII--GKNGSGKSTLALHLNGLLRPQKGK-VLVSGIDT 66 (274)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCce-EEECCEEC
Confidence 457776666 899999999853 22445563 55555555
No 426
>PLN02368 alanine transaminase
Probab=37.99 E-value=1.5e+02 Score=29.72 Aligned_cols=109 Identities=20% Similarity=0.374 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHh----h-cCCCeEEEEcCCHHHHHHHHHHHH-hcCcc--cccCCCCCcEEeccCCCcccccccceEEEc
Q psy13078 31 PKLKSFIDNCVE----L-CQPSDVHICDGSEREYKELIDLMV-KDKTL--RPVPKYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 31 ~~v~~~V~e~a~----L-~~P~~I~icdGS~eE~~~l~~~l~-~~G~~--~~L~~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
+++++-|++... + +.|++|+|..|+.+-...+...++ +.|.. ++-+-|++ ...+++.-..+.+-.
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~-------y~~~~~~~g~~~v~v 182 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPL-------YSATISLLGGTLVPY 182 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCcc-------HHHHHHHcCCEEEEE
Confidence 456665555542 2 689999999999999988888887 56743 33333432 223344444443332
Q ss_pred CCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCC-C-eEEEEecccCCCCCCCCc
Q psy13078 103 QEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKG-R-TMYVIPFSMGPVGSPLSK 162 (325)
Q Consensus 103 ~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~G-R-tMyViPfsmGPigsp~s~ 162 (325)
+-.++ .+| ++.+++++.+++.-. ++ | .++|+..---|.|.-++.
T Consensus 183 ~~~~~-------------~~~~~d~~~le~~i~~~~~---~~~~~k~l~l~nP~NPTG~v~s~ 229 (407)
T PLN02368 183 YLEES-------------ENWGLDVNNLRQSVAQARS---KGITVRAMVIINPGNPTGQCLSE 229 (407)
T ss_pred ecccc-------------cCCCCCHHHHHHHHHHHhh---cCCCeEEEEEECCCCCCCccCCH
Confidence 21111 134 677888877764211 22 2 345665556688877653
No 427
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=37.88 E-value=21 Score=36.10 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=27.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
++=+.|+.+-+. -|+|||||+|.=+ .++..| +|..=|.||.
T Consensus 269 l~i~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~ 313 (491)
T PRK10982 269 FDLHKGEILGIA--GLVGAKRTDIVETLFGIREKSAG-TITLHGKKIN 313 (491)
T ss_pred EEEeCCcEEEEe--cCCCCCHHHHHHHHcCCCcCCcc-EEEECCEECC
Confidence 334668888777 7999999998532 244456 4665555653
No 428
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.61 E-value=23 Score=35.88 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=24.3
Q ss_pred CCCceEEEEeecCCccChhhhcccCCC----CCC-ceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNPT----LPG-YKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p~----~pG-wkv~~VGDDI 319 (325)
++|+.+-+. -|+|+|||.|+-..-. ..| .||-+|..|.
T Consensus 135 ~~g~ii~lv--GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 135 ERGGVFALM--GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 346555555 8999999998653221 135 5787776664
No 429
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=37.51 E-value=21 Score=32.84 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=25.5
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
+.|+.+-|. .|||||||+|..+ .|+..|. |..=|.|+
T Consensus 45 ~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~~~G~-i~i~g~~i 85 (257)
T cd03288 45 KPGQKVGIC--GRTGSGKSSLSLAFFRMVDIFDGK-IVIDGIDI 85 (257)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHcccCCCCCe-EEECCEEh
Confidence 457777666 8999999999753 3556673 55555554
No 430
>PRK08637 hypothetical protein; Provisional
Probab=37.31 E-value=2.1e+02 Score=27.80 Aligned_cols=109 Identities=15% Similarity=0.201 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHh----hcCC---CeEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCccc-ccccceE
Q psy13078 30 SPKLKSFIDNCVE----LCQP---SDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVA-RVESKTF 99 (325)
Q Consensus 30 ~~~v~~~V~e~a~----L~~P---~~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvA-Rve~rTf 99 (325)
.+++++.+.+... ...| ++|+|..|+.+=...+.+.+.+.|..+-+. -|++. ..++ +......
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~-------~~~~~~~~g~~v 118 (388)
T PRK08637 46 IPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNY-------KLTFNTRRGAEI 118 (388)
T ss_pred CHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccH-------HHHHHHhcCCEE
Confidence 3555555554331 2333 578999999999988888888877544442 23222 1221 1223233
Q ss_pred EEcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 100 ICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 100 I~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
+-.+-..+ ++.++.+++++.++..-+ +.+.+||+|..--|.|..++
T Consensus 119 v~v~~~~~-------------~~~~d~~~l~~~~~~~~~---~~~~~~~~~~P~NPTG~~~s 164 (388)
T PRK08637 119 VTYPIFDE-------------DGGFDTDALKEALQAAYN---KGKVIVILNFPNNPTGYTPT 164 (388)
T ss_pred EEecccCC-------------CCcCCHHHHHHHHHhhcc---CCCEEEEEeCCCCCCCCCCC
Confidence 32221101 123578888887762111 25778999999999999877
No 431
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=37.23 E-value=22 Score=35.73 Aligned_cols=34 Identities=26% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VG 316 (325)
++|+..-+. .|||||||+|.-+. ++..|- |.+=|
T Consensus 48 ~~Gei~~I~--G~nGsGKSTLlr~L~Gl~~p~~G~-I~idG 85 (382)
T TIGR03415 48 EEGEICVLM--GLSGSGKSSLLRAVNGLNPVSRGS-VLVKD 85 (382)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCCcE-EEECC
Confidence 568887777 89999999997532 444565 54444
No 432
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=37.17 E-value=21 Score=31.50 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHhcCccccCCCeEEEEeccc
Q psy13078 124 ISPQDYEEAIMQRFPGCMKGRTMYVIPFSM 153 (325)
Q Consensus 124 m~~~~~~~~l~~~f~G~M~GRtMyViPfsm 153 (325)
.+.+++.+.+...++|.|+||.+-+-|+-.
T Consensus 107 ~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~ 136 (142)
T PLN00410 107 KDKQEFIDIVETVYRGARKGRGLVISPKDY 136 (142)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEECCCcc
Confidence 478899999999999999999998877643
No 433
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=37.15 E-value=25 Score=36.41 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=19.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-+. .|||||||+|.-
T Consensus 28 ~~i~~Ge~~~ii--G~NGsGKSTLlk 51 (556)
T PRK11819 28 LSFFPGAKIGVL--GLNGAGKSTLLR 51 (556)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHH
Confidence 444678888888 799999999864
No 434
>PRK08636 aspartate aminotransferase; Provisional
Probab=37.09 E-value=2e+02 Score=28.14 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHH----hh-cCCC-eEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEEE
Q psy13078 30 SPKLKSFIDNCV----EL-CQPS-DVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFIC 101 (325)
Q Consensus 30 ~~~v~~~V~e~a----~L-~~P~-~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~ 101 (325)
.+++++.|++.. .+ +.|+ +|++..|+.+-...+.+.+.+.|-.+-+. .|++. ...++....+.+-
T Consensus 73 ~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~-------~~~~~~~g~~~~~ 145 (403)
T PRK08636 73 IYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIH-------SQAFILAGGNVHK 145 (403)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcch-------HHHHHhcCCEEEE
Confidence 345666666654 22 7888 79999999999989988888877544432 34332 2344444444433
Q ss_pred cCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecc-cCCCCCCCCc
Q psy13078 102 TQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFS-MGPVGSPLSK 162 (325)
Q Consensus 102 t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfs-mGPigsp~s~ 162 (325)
.+-..+. +.=++++.+...+.+.++.. +.|+-||+|=+ -=|.|.-++.
T Consensus 146 v~~~~~~------------~~~~d~~~l~~~l~~~~~~~-~~~~~~i~~~~P~NPTG~~~s~ 194 (403)
T PRK08636 146 MPLEYNE------------DFELDEDQFFENLEKALRES-SPKPKYVVVNFPHNPTTATVEK 194 (403)
T ss_pred Eeccccc------------cCccChhhhhhHHHHHHhhc-cCCceEEEEeCCCCCCCccCCH
Confidence 2211110 01245555555554444321 23677777754 6677766654
No 435
>PLN00164 glucosyltransferase; Provisional
Probab=37.06 E-value=72 Score=32.91 Aligned_cols=106 Identities=19% Similarity=0.332 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHhhcCCC--eEEEEcCC-----HHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEc
Q psy13078 30 SPKLKSFIDNCVELCQPS--DVHICDGS-----EREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 30 ~~~v~~~V~e~a~L~~P~--~I~icdGS-----~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
.+++.+|+++ ||+ -||||=|| +++.++|...|...|. +. -|..|+++..-.+..+..
T Consensus 259 ~~~~~~wLd~-----~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~--~f-----lWv~~~~~~~~~~~~~~~---- 322 (480)
T PLN00164 259 PHECVRWLDA-----QPPASVVFLCFGSMGFFDAPQVREIAAGLERSGH--RF-----LWVLRGPPAAGSRHPTDA---- 322 (480)
T ss_pred hHHHHHHHHh-----CCCCceEEEEecccccCCHHHHHHHHHHHHHcCC--CE-----EEEEcCCccccccccccc----
Confidence 3568888887 444 49999999 6778888888877665 21 256665432110000000
Q ss_pred CCCCCcCCCC-CC--CccCCC-ccccCHHHHHHH-----------HHhcCccccCCCeEEEEecc
Q psy13078 103 QEKAETVPDT-KP--GVKGTL-GNWISPQDYEEA-----------IMQRFPGCMKGRTMYVIPFS 152 (325)
Q Consensus 103 ~~~~da~p~~-~~--Gv~~~l-~nwm~~~~~~~~-----------l~~~f~G~M~GRtMyViPfs 152 (325)
+..+.-|.+ .+ .-++.+ ..|....+.... ++..+.+...|..|.++|+.
T Consensus 323 -~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~ 386 (480)
T PLN00164 323 -DLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLY 386 (480)
T ss_pred -chhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcc
Confidence 000011111 00 011222 368887777665 34566778899999998863
No 436
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=37.00 E-value=20 Score=42.10 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=23.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGY 310 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGw 310 (325)
++=+.|+.+-+. .|||||||+|+-|. ++..|-
T Consensus 406 l~i~~Ge~vaIv--G~SGsGKSTLl~lL~gl~~p~~G~ 441 (1466)
T PTZ00265 406 FTLTEGKTYAFV--GESGCGKSTILKLIERLYDPTEGD 441 (1466)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHHHhccCCCCe
Confidence 444679998888 89999999987643 444554
No 437
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=36.68 E-value=26 Score=38.21 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=15.2
Q ss_pred EEEeecCCccChhhhcccCC
Q psy13078 286 YIAAAFPSACGKTNLAMLNP 305 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl~p 305 (325)
-+.-.-|+|||||.+|-...
T Consensus 349 ~lll~GppG~GKT~lAk~iA 368 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIA 368 (775)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34445899999999998543
No 438
>PF13245 AAA_19: Part of AAA domain
Probab=36.67 E-value=14 Score=28.74 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=10.2
Q ss_pred ecCCccChhhhcc
Q psy13078 290 AFPSACGKTNLAM 302 (325)
Q Consensus 290 AFPSaCGKTnlAM 302 (325)
--|.|+|||.++.
T Consensus 16 ~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 16 QGPPGTGKTTTLA 28 (76)
T ss_pred ECCCCCCHHHHHH
Confidence 3789999997654
No 439
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=36.66 E-value=24 Score=38.52 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=18.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=|.|++.=|. -+||||||+||=
T Consensus 494 L~I~~Ge~vaIv--G~SGsGKSTL~K 517 (709)
T COG2274 494 LEIPPGEKVAIV--GRSGSGKSTLLK 517 (709)
T ss_pred EEeCCCCEEEEE--CCCCCCHHHHHH
Confidence 444668877776 789999999984
No 440
>PLN02187 rooty/superroot1
Probab=36.61 E-value=1.6e+02 Score=29.96 Aligned_cols=46 Identities=7% Similarity=0.184 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc
Q psy13078 30 SPKLKSFIDNCVE-----LCQPSDVHICDGSEREYKELIDLMVKDKTLRPV 75 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L 75 (325)
.+++++.|++... -++|++|++..|+.+=...+...+.+.|..+-+
T Consensus 110 ~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv 160 (462)
T PLN02187 110 ILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILL 160 (462)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEE
Confidence 3457777777664 279999999999999999999988888855444
No 441
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.45 E-value=26 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=18.4
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=++|+...+. -|+|||||+|+-+
T Consensus 25 ~~i~~Ge~~~i~--G~nGsGKSTL~~~ 49 (235)
T COG1122 25 LEIEKGERVLLI--GPNGSGKSTLLKL 49 (235)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHH
Confidence 444567766666 7999999998763
No 442
>KOG0952|consensus
Probab=36.42 E-value=14 Score=42.31 Aligned_cols=14 Identities=50% Similarity=0.574 Sum_probs=12.4
Q ss_pred cCCccChhhhcccC
Q psy13078 291 FPSACGKTNLAMLN 304 (325)
Q Consensus 291 FPSaCGKTnlAMl~ 304 (325)
.|.|+|||++|||.
T Consensus 133 APTGsGKT~la~L~ 146 (1230)
T KOG0952|consen 133 APTGSGKTVLAELC 146 (1230)
T ss_pred CCCCCCchHHHHHH
Confidence 68999999999973
No 443
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=36.38 E-value=24 Score=33.63 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCceEEEEeecCCccChhhhcc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.+.-.||. .|+|||||.++.
T Consensus 39 ~~~~i~I~--G~~GtGKT~l~~ 58 (365)
T TIGR02928 39 RPSNVFIY--GKTGTGKTAVTK 58 (365)
T ss_pred CCCcEEEE--CCCCCCHHHHHH
Confidence 34457887 899999999985
No 444
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=36.32 E-value=25 Score=35.90 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.0
Q ss_pred eCCCCceEEEEeecCCccChhhhcc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+=..|+.+-+. .|||||||+|.=
T Consensus 23 ~i~~Ge~~~li--G~NGsGKSTLl~ 45 (530)
T PRK15064 23 KFGGGNRYGLI--GANGCGKSTFMK 45 (530)
T ss_pred EECCCCEEEEE--CCCCCCHHHHHH
Confidence 33458887777 799999999864
No 445
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.32 E-value=23 Score=36.27 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=17.6
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|..+-|. -|+|||||.||+
T Consensus 271 ~~g~~~li~--G~~G~GKT~l~~ 291 (509)
T PRK09302 271 FRGSIILVS--GATGTGKTLLAS 291 (509)
T ss_pred CCCcEEEEE--cCCCCCHHHHHH
Confidence 668888886 499999999986
No 446
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=36.10 E-value=24 Score=38.08 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHh
Q psy13078 32 KLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVK 68 (325)
Q Consensus 32 ~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~ 68 (325)
.+.+|-.+..+.++|..+-=+-|-++|.+++.+.|..
T Consensus 164 ~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~ 200 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCR 200 (731)
T ss_pred HHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc
Confidence 5667777888888888775566888888888766543
No 447
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=36.04 E-value=24 Score=35.90 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=17.4
Q ss_pred eCCCCceEEEEeecCCccChhhhc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+=+.|+.+-+. -|||||||+|.
T Consensus 284 ~i~~Ge~~~l~--G~NGsGKSTLl 305 (506)
T PRK13549 284 SLRRGEILGIA--GLVGAGRTELV 305 (506)
T ss_pred EEcCCcEEEEe--CCCCCCHHHHH
Confidence 33568877777 79999999985
No 448
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=35.94 E-value=24 Score=35.75 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=24.6
Q ss_pred CCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
..|+.+-+. -|||||||+|.-+ .++..|. |.+-|.|+
T Consensus 28 ~~Ge~~~l~--G~NGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~ 68 (501)
T PRK10762 28 YPGRVMALV--GENGAGKSTMMKVLTGIYTRDAGS-ILYLGKEV 68 (501)
T ss_pred cCCeEEEEE--CCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEC
Confidence 457777777 7999999998532 2445565 45555554
No 449
>PF13173 AAA_14: AAA domain
Probab=35.88 E-value=28 Score=28.62 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=13.0
Q ss_pred ceEEEEeecCCccChhhhcc
Q psy13078 283 QKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAM 302 (325)
+.+-+. .|-+||||.|+.
T Consensus 3 ~~~~l~--G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILT--GPRGVGKTTLLK 20 (128)
T ss_pred CeEEEE--CCCCCCHHHHHH
Confidence 334444 789999999973
No 450
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=35.63 E-value=27 Score=28.90 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=14.3
Q ss_pred CCceEEEEeecCCccChhhhcc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.+...+. -|.|+|||-+|+
T Consensus 24 ~~~~~ll~--~~tGsGKT~~~~ 43 (184)
T PF04851_consen 24 EERRVLLN--APTGSGKTIIAL 43 (184)
T ss_dssp GCSEEEEE--ESTTSSHHHHHH
T ss_pred CCCCEEEE--ECCCCCcChhhh
Confidence 34444554 399999998876
No 451
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=35.61 E-value=26 Score=35.78 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=19.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-+. .|||||||+|.-
T Consensus 340 ~~i~~Ge~~~l~--G~NGsGKSTLl~ 363 (530)
T PRK15064 340 LLLEAGERLAII--GENGVGKTTLLR 363 (530)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHH
Confidence 444568888888 799999999964
No 452
>PRK04195 replication factor C large subunit; Provisional
Probab=35.60 E-value=32 Score=35.08 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=14.7
Q ss_pred ceEEEEeecCCccChhhhcccC
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+-..+. .|+|||||.+|-..
T Consensus 40 ~~lLL~--GppG~GKTtla~al 59 (482)
T PRK04195 40 KALLLY--GPPGVGKTSLAHAL 59 (482)
T ss_pred CeEEEE--CCCCCCHHHHHHHH
Confidence 344454 89999999998643
No 453
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=35.46 E-value=23 Score=32.09 Aligned_cols=13 Identities=31% Similarity=0.238 Sum_probs=11.4
Q ss_pred ecCCccChhhhcc
Q psy13078 290 AFPSACGKTNLAM 302 (325)
Q Consensus 290 AFPSaCGKTnlAM 302 (325)
-.|+|+|||.|+.
T Consensus 49 ~G~~G~GKTtl~~ 61 (269)
T TIGR03015 49 TGEVGAGKTTLIR 61 (269)
T ss_pred EcCCCCCHHHHHH
Confidence 4799999999987
No 454
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.44 E-value=25 Score=36.43 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=25.2
Q ss_pred EEEEeecCCccChhhhcccCC----CCCCceEEEecccc
Q psy13078 285 KYIAAAFPSACGKTNLAMLNP----TLPGYKVECVGVPY 319 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~p----~~pGwkv~~VGDDI 319 (325)
+.++-.-|+|||||++|.-.- ...|.+|-.+.-|.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 344445799999999876332 23688999888775
No 455
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=35.35 E-value=27 Score=31.00 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=13.3
Q ss_pred CceEEEEeecCCccChhhh
Q psy13078 282 GQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnl 300 (325)
|+..-++ .|+|||||+|
T Consensus 29 ~~~~~l~--G~Ng~GKStl 45 (202)
T cd03243 29 GRLLLIT--GPNMGGKSTY 45 (202)
T ss_pred CeEEEEE--CCCCCccHHH
Confidence 5555566 8999999987
No 456
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=35.27 E-value=2.9e+02 Score=26.25 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHH----hh-cCCC-eEEEEcCCHHHHHHHHHHHHhcCc---ccccCCCCCcEEeccCCCcccccccceEE
Q psy13078 30 SPKLKSFIDNCV----EL-CQPS-DVHICDGSEREYKELIDLMVKDKT---LRPVPKYENCWLARTNPADVARVESKTFI 100 (325)
Q Consensus 30 ~~~v~~~V~e~a----~L-~~P~-~I~icdGS~eE~~~l~~~l~~~G~---~~~L~~~~n~~l~rsdp~DvARve~rTfI 100 (325)
.+++++.|++.. .+ +.|+ +|.+..|+.+=...+...+.+.|. .+-+.. | .+......++...-+.+
T Consensus 38 ~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~-p----~y~~~~~~~~~~g~~~~ 112 (350)
T TIGR03537 38 TKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGT-P----GYPVYERGALFAGGEPT 112 (350)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcC-C----CCcchHHHHHhcCCEEE
Confidence 456666666654 33 6798 999999999999888888877652 222211 1 11223344444444444
Q ss_pred EcCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 101 CTQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 101 ~t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
-.+-..+ +.| ++++++++.+.+. -|-.| +.---=|.|.-++
T Consensus 113 ~v~~~~~-------------~~~~~d~~~l~~~~~~~------~~~i~-i~~p~NPtG~~~~ 154 (350)
T TIGR03537 113 AVKLKKE-------------DGFLLRLEKVEKSILEE------TKIVW-INYPHNPTGATAP 154 (350)
T ss_pred EcccCcc-------------cCCccCHHHHHHhhhhc------cEEEE-EeCCCCCcCcccC
Confidence 4332211 135 6888887776542 23333 3333567775554
No 457
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=35.20 E-value=24 Score=35.85 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=16.4
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
..|+.+-+. -|||||||+|.
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl 48 (506)
T PRK13549 29 RAGEIVSLC--GENGAGKSTLM 48 (506)
T ss_pred eCCeEEEEE--CCCCCCHHHHH
Confidence 458777777 79999999985
No 458
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=35.18 E-value=24 Score=32.12 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=11.4
Q ss_pred EEEeecCCccChhhh
Q psy13078 286 YIAAAFPSACGKTNL 300 (325)
Q Consensus 286 yiaaAFPSaCGKTnl 300 (325)
.++-.-|+|+|||||
T Consensus 27 i~~ivGpNGaGKSTl 41 (212)
T cd03274 27 FSAIVGPNGSGKSNV 41 (212)
T ss_pred eEEEECCCCCCHHHH
Confidence 344557888999998
No 459
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=35.16 E-value=26 Score=37.34 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=19.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=+.|+..=+. .|||||||+|.-+
T Consensus 473 l~i~~Ge~~~Iv--G~nGsGKSTLl~l 497 (659)
T TIGR00954 473 FEVPSGNHLLIC--GPNGCGKSSLFRI 497 (659)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHH
Confidence 344568887777 7999999998653
No 460
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.11 E-value=33 Score=34.81 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=25.1
Q ss_pred eEEEEeecCCccChhhhcc-cCC------CCCCceEEEecccc
Q psy13078 284 KKYIAAAFPSACGKTNLAM-LNP------TLPGYKVECVGVPY 319 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAM-l~p------~~pGwkv~~VGDDI 319 (325)
...|+-..|.|.|||+++- |.- ...|.+|-+|.-|-
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 3466667899999999874 111 12588999887663
No 461
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=34.90 E-value=29 Score=32.50 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=25.0
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-|. .|+|||||+|.=+. ++..| +|.+=|.++.
T Consensus 34 ~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~ 75 (280)
T PRK13633 34 KKGEFLVIL--GRNGSGKSTIAKHMNALLIPSEG-KVYVDGLDTS 75 (280)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEecc
Confidence 458776666 89999999985422 44456 4665555553
No 462
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=34.89 E-value=27 Score=36.17 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.4
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
..|+.+-+. .|+|||||+|.-
T Consensus 348 ~~Ge~~~l~--G~NGsGKSTLl~ 368 (556)
T PRK11819 348 PPGGIVGII--GPNGAGKSTLFK 368 (556)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468888887 799999999864
No 463
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=34.79 E-value=18 Score=35.91 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=24.3
Q ss_pred CceEEEEeecCCccChhhhcc-cCCCCCCceEEEeccccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM-LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM-l~p~~pGwkv~~VGDDIA 320 (325)
|+-.-|+ -+||.||+.||. |.- -|+ +.|+||..
T Consensus 146 g~gvli~--G~sg~GKS~lal~Li~--rg~--~lvaDD~~ 179 (304)
T TIGR00679 146 GVGVLIT--GKSGVGKSETALELIN--RGH--RLVADDAV 179 (304)
T ss_pred CEEEEEE--cCCCCCHHHHHHHHHH--cCC--ceeecCeE
Confidence 5555555 799999999876 322 477 79999974
No 464
>CHL00181 cbbX CbbX; Provisional
Probab=34.58 E-value=27 Score=33.53 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=19.3
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+|+..|+ .-..+.=--|+|||||.+|-..
T Consensus 51 ~g~~~~~-~~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 51 LGLTSSN-PGLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred cCCCCCC-CCceEEEECCCCCCHHHHHHHH
Confidence 3665553 2233444589999999999765
No 465
>PLN03130 ABC transporter C family member; Provisional
Probab=34.55 E-value=23 Score=41.92 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=21.6
Q ss_pred ceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.++=|.|+++-|+ .|||||||+|+.+
T Consensus 637 nl~i~~Ge~vaIv--G~sGSGKSTLl~l 662 (1622)
T PLN03130 637 NLDVPVGSLVAIV--GSTGEGKTSLISA 662 (1622)
T ss_pred eEEecCCCEEEEE--CCCCCCHHHHHHH
Confidence 3556789998888 8999999999764
No 466
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=34.31 E-value=39 Score=29.76 Aligned_cols=49 Identities=6% Similarity=0.088 Sum_probs=39.0
Q ss_pred cccCHHHHHHHHHHHh---hcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc
Q psy13078 27 SAISPKLKSFIDNCVE---LCQPSDVHICDGSEREYKELIDLMVKDKTLRPV 75 (325)
Q Consensus 27 ~~l~~~v~~~V~e~a~---L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L 75 (325)
..|-+.+.+|+.+.-. -..|++|+++.|..+=...+...+.+.|..+-+
T Consensus 95 ~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlV 146 (153)
T PLN02994 95 ANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLV 146 (153)
T ss_pred HHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEE
Confidence 4566777778877633 268999999999999999999999988876554
No 467
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=34.29 E-value=45 Score=30.51 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=20.6
Q ss_pred ceEEEEeecCCccChhhhcccC-----CCCCCceEEEe
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLN-----PTLPGYKVECV 315 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~-----p~~pGwkv~~V 315 (325)
...|+. -|||+|||-|.+.. -.-|+-+|-.+
T Consensus 35 ~~l~l~--G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 35 NPLFLY--GPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp SEEEEE--ESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CceEEE--CCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 458998 79999999985532 11356666655
No 468
>KOG0726|consensus
Probab=33.87 E-value=24 Score=35.96 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.0
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|||+.|+|...| -+.|.|||-||=
T Consensus 214 mGikpPKGVIly----G~PGTGKTLLAK 237 (440)
T KOG0726|consen 214 MGIKPPKGVILY----GEPGTGKTLLAK 237 (440)
T ss_pred cCCCCCCeeEEe----CCCCCchhHHHH
Confidence 589999998888 578999999975
No 469
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=33.60 E-value=36 Score=34.16 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 256 RIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 256 RiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
=+....+.++ +-..|++.+.+|.---..+. .|+|+|||.+|=
T Consensus 15 pf~~ivGq~~---~k~al~~~~~~p~~~~vli~--G~~GtGKs~~ar 56 (350)
T CHL00081 15 PFTAIVGQEE---MKLALILNVIDPKIGGVMIM--GDRGTGKSTTIR 56 (350)
T ss_pred CHHHHhChHH---HHHHHHHhccCCCCCeEEEE--cCCCCCHHHHHH
Confidence 3444445443 44668888889873334455 799999999874
No 470
>PRK12414 putative aminotransferase; Provisional
Probab=33.51 E-value=1.4e+02 Score=28.98 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=50.3
Q ss_pred CC-CeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCccCCCccc
Q psy13078 45 QP-SDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNW 123 (325)
Q Consensus 45 ~P-~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~~~l~nw 123 (325)
.| +.|++..|+.+-...+.+.++..|..+-+.. |. | ......++....+.+..+-..+ +|
T Consensus 88 ~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~-p~-y---~~~~~~~~~~g~~~~~v~~~~~--------------~~ 148 (384)
T PRK12414 88 DPASEVTVIASASEGLYAAISALVHPGDEVIYFE-PS-F---DSYAPIVRLQGATPVAIKLSPE--------------DF 148 (384)
T ss_pred CCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeC-CC-c---cchHHHHHHcCCEEEEEecCcc--------------cc
Confidence 45 6899999999988888888887775444321 22 1 1123334443444433322111 23
Q ss_pred -cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 124 -ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 124 -m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
++++++++.+++ .-.++++..--=|.|.-++
T Consensus 149 ~~d~~~l~~~l~~-------~~~~v~i~~p~NPTG~~~s 180 (384)
T PRK12414 149 RVNWDEVAAAITP-------RTRMIIVNTPHNPSATVFS 180 (384)
T ss_pred ccCHHHHHhhcCc-------ccEEEEEcCCCCCCCcCCC
Confidence 567776665532 2345666555667666543
No 471
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=33.24 E-value=31 Score=33.06 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=26.7
Q ss_pred eCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
+=+.|+..-+. .|+|||||+|.-+ .++..| +|.+-|-|+.
T Consensus 29 ~i~~Gei~gll--GpNGaGKSTLl~~l~Gl~~p~~G-~v~i~G~~~~ 72 (306)
T PRK13537 29 HVQRGECFGLL--GPNGAGKTTTLRMLLGLTHPDAG-SISLCGEPVP 72 (306)
T ss_pred EEeCCcEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEecc
Confidence 33568776665 8999999998532 244556 4777776664
No 472
>PRK05642 DNA replication initiation factor; Validated
Probab=33.17 E-value=25 Score=32.34 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=15.1
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
.-.|+. .|+|||||-||..
T Consensus 46 ~~l~l~--G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLW--GKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEE--CCCCCCHHHHHHH
Confidence 456777 7999999999664
No 473
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=33.13 E-value=37 Score=37.44 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=17.9
Q ss_pred eCCCCceEEEEeecCCccChhhhcccC
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
.++.|....+. -|+|||||.+|-..
T Consensus 345 ~~~~g~~i~l~--GppG~GKTtl~~~i 369 (784)
T PRK10787 345 NKIKGPILCLV--GPPGVGKTSLGQSI 369 (784)
T ss_pred ccCCCceEEEE--CCCCCCHHHHHHHH
Confidence 34567655554 89999999998643
No 474
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=33.02 E-value=30 Score=31.70 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=22.6
Q ss_pred CCceEEEEeecCCccChhhhcccC---CCCC-CceEEEec
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN---PTLP-GYKVECVG 316 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~---p~~p-Gwkv~~VG 316 (325)
.|+.+-|+ .|+|+|||.|+.-. -... |++|-.++
T Consensus 29 ~g~~~~i~--g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILT--AGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEE--cCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 36544444 79999999987632 1234 88886665
No 475
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=33.02 E-value=1e+02 Score=27.89 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=26.2
Q ss_pred ccccCHHHHHHHHHHHhhcCCCeEEEEcCC
Q psy13078 26 VSAISPKLKSFIDNCVELCQPSDVHICDGS 55 (325)
Q Consensus 26 ~~~l~~~v~~~V~e~a~L~~P~~I~icdGS 55 (325)
-..+++++.+|++++-+.--.++|.|++-|
T Consensus 57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNs 86 (168)
T PF09419_consen 57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNS 86 (168)
T ss_pred cCcCCHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 367899999999999999888899998766
No 476
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=32.99 E-value=13 Score=37.21 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=25.8
Q ss_pred HhhhhhceeCCCCceEEEEeecCCccChhhhcccCC---CCCCceEEEec-cc
Q psy13078 270 EHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG-VP 318 (325)
Q Consensus 270 EHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG-DD 318 (325)
+++-|+.|.|.+| |+|||++|.-.. ..-|+||=+|= ||
T Consensus 104 ~~~~vIav~n~KG-----------GVGKTTta~nLA~~LA~~G~rVLlIDl~D 145 (387)
T PHA02519 104 KNPVVLAVMSHKG-----------GVYKTSSAVHTAQWLALQGHRVLLIEGND 145 (387)
T ss_pred CCceEEEEecCCC-----------CCcHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3456666666665 899998776332 24799998885 44
No 477
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.91 E-value=30 Score=32.55 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=25.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-|. .|+|+|||+|.- +.++..| +|.+=|-|+
T Consensus 28 l~i~~Ge~~~ii--G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 71 (287)
T PRK13641 28 FELEEGSFVALV--GHTGSGKSTLMQHFNALLKPSSG-TITIAGYHI 71 (287)
T ss_pred EEEeCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEC
Confidence 344568887676 899999999854 2244445 244444443
No 478
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.90 E-value=34 Score=32.51 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=28.2
Q ss_pred CCceEEEEeecCCccChhhhcccCCC---CCCceEEEecccccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGVPYKG 321 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~VGDDIA~ 321 (325)
.|+..=|. -|||+||++|-|+..- ..+=.|+..|-++.+
T Consensus 35 ~Ge~vaiV--G~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ 76 (228)
T COG4181 35 RGETVAIV--GPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK 76 (228)
T ss_pred CCceEEEE--cCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhh
Confidence 37777666 7999999999886532 245568888877654
No 479
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=32.83 E-value=16 Score=36.40 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=16.0
Q ss_pred CceEEEEeecCCccChhhhcccC
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++..++. -|+|||||.+|...
T Consensus 64 ~~~ilL~--G~pGtGKTtla~~l 84 (327)
T TIGR01650 64 DRRVMVQ--GYHGTGKSTHIEQI 84 (327)
T ss_pred CCcEEEE--eCCCChHHHHHHHH
Confidence 3456665 79999999998854
No 480
>PLN02656 tyrosine transaminase
Probab=32.74 E-value=2.9e+02 Score=27.11 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc
Q psy13078 30 SPKLKSFIDNCVE-----LCQPSDVHICDGSEREYKELIDLMVKDKTLRPV 75 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L 75 (325)
.+++++.|++... -++|++|++..|+.+=...+...+++.|..+-+
T Consensus 75 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv 125 (409)
T PLN02656 75 LPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILL 125 (409)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEE
Confidence 3567777766654 268999999999999888888888877754444
No 481
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=32.60 E-value=30 Score=35.38 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=26.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|+|||||+|.-+. ++..| +|++=|.+|
T Consensus 284 l~i~~Ge~~~l~--G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i 327 (510)
T PRK15439 284 LEVRAGEILGLA--GVVGAGRTELAETLYGLRPARGG-RIMLNGKEI 327 (510)
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHHHcCCCCCCCc-EEEECCEEC
Confidence 444568877777 89999999987532 33445 465556554
No 482
>PRK08361 aspartate aminotransferase; Provisional
Probab=32.59 E-value=2.9e+02 Score=26.70 Aligned_cols=107 Identities=18% Similarity=0.296 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCC
Q psy13078 30 SPKLKSFIDNCVE-----LCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQE 104 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~ 104 (325)
.+++++.+++... -+.|++|++..|+.+=...+...+.+.|..+-+.. |. |.. ....++.-...++..+-
T Consensus 72 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~-p~-y~~---~~~~~~~~g~~~~~v~~ 146 (391)
T PRK08361 72 IPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPD-PA-FVC---YVEDAKIAEAKPIRIPL 146 (391)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcC-CC-Ccc---cHHHHHHcCCEEEEEec
Confidence 3566666666542 27799999999998887878777777665333321 21 111 12333333334433221
Q ss_pred CCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 105 KAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 105 ~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
..+ ++| ++++++++.+.+. ..+.|+.----|.|..++
T Consensus 147 ~~~-------------~~~~~d~~~l~~~i~~~-------~~~v~i~~p~NPtG~~~~ 184 (391)
T PRK08361 147 REE-------------NEFQPDPDELLELITKR-------TRMIVINYPNNPTGATLD 184 (391)
T ss_pred CCc-------------cCCCCCHHHHHHhcccc-------cEEEEEeCCCCCCCcCcC
Confidence 111 134 7888888777542 234444433556776655
No 483
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=32.57 E-value=35 Score=38.68 Aligned_cols=25 Identities=28% Similarity=0.137 Sum_probs=17.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
....+++..-|. .|+|+|||+||-.
T Consensus 202 l~~~~~~vvgI~--G~gGiGKTTLA~~ 226 (1153)
T PLN03210 202 LESEEVRMVGIW--GSSGIGKTTIARA 226 (1153)
T ss_pred cccCceEEEEEE--cCCCCchHHHHHH
Confidence 444455554444 8999999999964
No 484
>PRK06921 hypothetical protein; Provisional
Probab=32.55 E-value=31 Score=32.72 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCceEEEEeecCCccChhhhcccC--CCC-C-CceEEEec
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN--PTL-P-GYKVECVG 316 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~--p~~-p-Gwkv~~VG 316 (325)
++...|+. -|+|+|||-||... -.+ . |.+|-.+.
T Consensus 116 ~~~~l~l~--G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALL--GQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEE--CCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 46678888 59999999988643 222 2 77776553
No 485
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=31.99 E-value=35 Score=32.42 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=16.8
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
.|+-.+|+ -|.|||||+|-
T Consensus 27 ~Ge~~~i~--G~NG~GKTtLL 45 (209)
T COG4133 27 AGEALQIT--GPNGAGKTTLL 45 (209)
T ss_pred CCCEEEEE--CCCCCcHHHHH
Confidence 49999999 79999999984
No 486
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=31.83 E-value=13 Score=37.11 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=27.4
Q ss_pred HhhhhhceeCCCCceEEEEeecCCccChhhhcccCC---CCCCceEEEec-cc
Q psy13078 270 EHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG-VP 318 (325)
Q Consensus 270 EHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG-DD 318 (325)
+++-|+.|.|.+| |+|||++|.-.. ..-|+||=+|= ||
T Consensus 104 ~~~~vIai~n~KG-----------GVGKTT~a~nLA~~LA~~G~rVLlID~~D 145 (388)
T PRK13705 104 VFPPVIGVAAHKG-----------GVYKTSVSVHLAQDLALKGLRVLLVEGND 145 (388)
T ss_pred CCCeEEEEECCCC-----------CchHHHHHHHHHHHHHhcCCCeEEEcCCC
Confidence 6667777777766 899999776432 14799998885 55
No 487
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=31.74 E-value=3.2e+02 Score=26.46 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=30.5
Q ss_pred HHHHHHHHHHH----hh--cCCC-eEEEEcCCHHHHHHHHHHHHhc
Q psy13078 31 PKLKSFIDNCV----EL--CQPS-DVHICDGSEREYKELIDLMVKD 69 (325)
Q Consensus 31 ~~v~~~V~e~a----~L--~~P~-~I~icdGS~eE~~~l~~~l~~~ 69 (325)
+++++.|++.. .+ +.|+ .|.+..|+.+=...+.+.+++.
T Consensus 68 ~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~ 113 (396)
T PRK09147 68 PALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDR 113 (396)
T ss_pred HHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCC
Confidence 56666666654 33 6785 8999999999999998888887
No 488
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=31.63 E-value=36 Score=34.49 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=16.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+.=++|+..=.. -|||||||+|-
T Consensus 23 l~i~~Ge~vaLl--GpSGaGKsTlL 45 (345)
T COG1118 23 LDIKSGELVALL--GPSGAGKSTLL 45 (345)
T ss_pred eeecCCcEEEEE--CCCCCcHHHHH
Confidence 334567766555 79999999873
No 489
>CHL00095 clpC Clp protease ATP binding subunit
Probab=31.59 E-value=34 Score=37.55 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=18.1
Q ss_pred hceeCCCCce-EEEEeecCCccChhhhcc
Q psy13078 275 LGITNPEGQK-KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~P~G~~-~yiaaAFPSaCGKTnlAM 302 (325)
.|+.+|+.-. .|+ =.-|+|||||.||-
T Consensus 530 ~gl~~~~~p~~~~l-f~Gp~GvGKt~lA~ 557 (821)
T CHL00095 530 VGLKNPNRPIASFL-FSGPTGVGKTELTK 557 (821)
T ss_pred hcccCCCCCceEEE-EECCCCCcHHHHHH
Confidence 5667774332 232 25899999999884
No 490
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=31.59 E-value=1.4e+02 Score=30.65 Aligned_cols=98 Identities=17% Similarity=0.311 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhcCC--CeEEEEcCCH-----HHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEE-EcCC
Q psy13078 33 LKSFIDNCVELCQP--SDVHICDGSE-----REYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFI-CTQE 104 (325)
Q Consensus 33 v~~~V~e~a~L~~P--~~I~icdGS~-----eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI-~t~~ 104 (325)
..+|+++ || .-||||=||. ++.++|...|...|. .-| |..|++..| ++. +. ..++
T Consensus 254 ~~~wLd~-----~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~-~Fl------Wv~r~~~~~----~~~-~~~~lp~ 316 (451)
T PLN02410 254 CIEWLNK-----QKKNSVIFVSLGSLALMEINEVMETASGLDSSNQ-QFL------WVIRPGSVR----GSE-WIESLPK 316 (451)
T ss_pred HHHHHHh-----CCCCcEEEEEccccccCCHHHHHHHHHHHHhcCC-CeE------EEEccCccc----ccc-hhhcCCh
Confidence 4567665 44 5799999954 778888777777776 223 566642110 000 00 0010
Q ss_pred C-CCcCCCCCCCccCCCccccCHHHHHHH-----------HHhcCccccCCCeEEEEecc
Q psy13078 105 K-AETVPDTKPGVKGTLGNWISPQDYEEA-----------IMQRFPGCMKGRTMYVIPFS 152 (325)
Q Consensus 105 ~-~da~p~~~~Gv~~~l~nwm~~~~~~~~-----------l~~~f~G~M~GRtMyViPfs 152 (325)
. ++-.+. ++....|....+.... .+..+.+...|..|.++|+.
T Consensus 317 ~f~er~~~-----~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 371 (451)
T PLN02410 317 EFSKIISG-----RGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFS 371 (451)
T ss_pred hHHHhccC-----CeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecccc
Confidence 0 000111 1233478888887776 56777888999999999974
No 491
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=31.58 E-value=31 Score=41.69 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=20.3
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
-|+=|.++-+=|| -+|||||++||+
T Consensus 20 ~v~IP~~klvViT--GvSGSGKSSLaF 44 (1809)
T PRK00635 20 SIEFCPREIVLLT--GVSGSGKSSLAF 44 (1809)
T ss_pred eeccCCCcEEEEE--CCCCCCHHHHHH
Confidence 3556877777666 899999999997
No 492
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=31.54 E-value=26 Score=36.87 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=20.1
Q ss_pred CCCCceEEEEeecCCccChhhhcccC
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
=.+|+..|+. --.|||||+++||.
T Consensus 346 ikrGelvFli--G~NGsGKST~~~LL 369 (546)
T COG4615 346 IKRGELVFLI--GGNGSGKSTLAMLL 369 (546)
T ss_pred EecCcEEEEE--CCCCCcHHHHHHHH
Confidence 3469999999 56899999999974
No 493
>PRK08939 primosomal protein DnaI; Reviewed
Probab=31.53 E-value=34 Score=33.28 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=25.1
Q ss_pred CCCCceEEEEeecCCccChhhhcccCCC---CCCceEEEe
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECV 315 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~V 315 (325)
++.++-.|+.| |+|+|||-||....- -.|++|.++
T Consensus 153 ~~~~~gl~L~G--~~G~GKThLa~Aia~~l~~~g~~v~~~ 190 (306)
T PRK08939 153 GEKVKGLYLYG--DFGVGKSYLLAAIANELAKKGVSSTLL 190 (306)
T ss_pred cCCCCeEEEEC--CCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 34567789995 789999999874321 358888765
No 494
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=31.48 E-value=43 Score=34.28 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=22.2
Q ss_pred eEEEEeecCCccChhhhcccCC-----CCCCceEEEec
Q psy13078 284 KKYIAAAFPSACGKTNLAMLNP-----TLPGYKVECVG 316 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl~p-----~~pGwkv~~VG 316 (325)
-.|+. .|+|||||-|+...- ..||.+|-++.
T Consensus 143 pl~i~--G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~ 178 (450)
T PRK14087 143 PLFIY--GESGMGKTHLLKAAKNYIESNFSDLKVSYMS 178 (450)
T ss_pred ceEEE--CCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 37777 789999999875432 24788877664
No 495
>PTZ00202 tuzin; Provisional
Probab=31.31 E-value=36 Score=36.33 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=14.5
Q ss_pred EEEEeecCCccChhhh
Q psy13078 285 KYIAAAFPSACGKTNL 300 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnl 300 (325)
.+++-.-|+|||||+|
T Consensus 287 rivvLtG~~G~GKTTL 302 (550)
T PTZ00202 287 RIVVFTGFRGCGKSSL 302 (550)
T ss_pred eEEEEECCCCCCHHHH
Confidence 4888889999999999
No 496
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=31.30 E-value=1.1e+02 Score=28.46 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=38.5
Q ss_pred eccccccCHHHHHHHHHHHhhcCCC-----eEEEEcCCHHHHHHHHHHHHh---cCcccc
Q psy13078 23 HGYVSAISPKLKSFIDNCVELCQPS-----DVHICDGSEREYKELIDLMVK---DKTLRP 74 (325)
Q Consensus 23 ~g~~~~l~~~v~~~V~e~a~L~~P~-----~I~icdGS~eE~~~l~~~l~~---~G~~~~ 74 (325)
-||++.||+++++-+++..+.++-. .|-++-|+..|.....+.+.+ +|.+.+
T Consensus 89 iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~~~~~~~ 148 (223)
T PF01255_consen 89 IGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEVQSGKLSP 148 (223)
T ss_dssp ES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHHHTTSSGG
T ss_pred EeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhhccCcccc
Confidence 3999999999999999999988533 455667899999999888875 554433
No 497
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.29 E-value=32 Score=36.09 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=23.3
Q ss_pred CCceEEEEeecCCccChhhhcccCC----CCCCc-eEEEecccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNP----TLPGY-KVECVGVPY 319 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p----~~pGw-kv~~VGDDI 319 (325)
+|+.+-+. .|+|||||+|+-..- ...|. ||-+|-.|-
T Consensus 255 ~g~Vi~Lv--GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 255 RGGVFALM--GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CCcEEEEE--CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 45555555 799999998864322 12354 787776663
No 498
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=31.21 E-value=25 Score=34.77 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=24.1
Q ss_pred CceEEEEeecCCccChhhhcc-cCCCC--CCceEEEec
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM-LNPTL--PGYKVECVG 316 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM-l~p~~--pGwkv~~VG 316 (325)
++.+-|.-.-+|++|||.|.- |.+.+ .||+|-+|-
T Consensus 203 ~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 203 GAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 344455555789999999943 33433 599998886
No 499
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=31.09 E-value=25 Score=32.71 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=12.4
Q ss_pred EEEeecCCccChhhhcc
Q psy13078 286 YIAAAFPSACGKTNLAM 302 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAM 302 (325)
.+.+--|.|||||-||.
T Consensus 21 ~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp EEEEE--TTSSTTHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 56666899999999986
No 500
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=30.95 E-value=33 Score=34.84 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=25.3
Q ss_pred eCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
+=+.|+.+-+. -|+|||||+|.= +.++..|. |..=|.|+
T Consensus 275 ~i~~Ge~~~ii--G~NGsGKSTLlk~l~G~~~p~~G~-i~~~g~~~ 317 (501)
T PRK11288 275 SVRAGEIVGLF--GLVGAGRSELMKLLYGATRRTAGQ-VYLDGKPI 317 (501)
T ss_pred EEeCCcEEEEE--cCCCCCHHHHHHHHcCCCcCCCce-EEECCEEC
Confidence 33568888777 799999999742 23445564 55445454
Done!