Query psy13078
Match_columns 325
No_of_seqs 125 out of 384
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:52:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3moe_A Phosphoenolpyruvate car 100.0 3E-149 1E-153 1128.5 25.7 301 19-321 15-316 (624)
2 2faf_A Phosphoenolpyruvate car 100.0 1E-143 3E-148 1087.4 26.8 297 23-321 2-300 (608)
3 2zci_A Phosphoenolpyruvate car 100.0 7E-140 2E-144 1060.8 25.3 285 27-321 14-300 (610)
4 1j3b_A ATP-dependent phosphoen 100.0 3.8E-55 1.3E-59 441.2 12.3 237 39-319 5-254 (529)
5 2olr_A Phosphoenolpyruvate car 100.0 1.5E-27 5.3E-32 241.1 21.5 250 38-319 12-270 (540)
6 1ytm_A Phosphoenolpyruvate car 99.9 1.9E-27 6.5E-32 240.2 14.4 237 37-320 6-265 (532)
7 1ii2_A Phosphoenolpyruvate car 99.9 5.7E-27 2E-31 236.4 14.9 234 46-320 1-243 (524)
8 3uie_A Adenylyl-sulfate kinase 89.1 0.15 5.1E-06 43.1 1.9 40 279-320 22-65 (200)
9 1in4_A RUVB, holliday junction 88.2 0.078 2.7E-06 48.9 -0.5 48 237-303 23-70 (334)
10 4eun_A Thermoresistant glucoki 87.4 0.26 8.8E-06 41.6 2.3 40 278-320 25-64 (200)
11 1rz3_A Hypothetical protein rb 86.5 0.36 1.2E-05 40.9 2.7 38 280-319 20-60 (201)
12 3vaa_A Shikimate kinase, SK; s 84.2 0.46 1.6E-05 40.0 2.3 22 280-303 23-44 (199)
13 3c8u_A Fructokinase; YP_612366 84.1 0.48 1.6E-05 40.3 2.3 21 280-302 20-40 (208)
14 1znw_A Guanylate kinase, GMP k 83.4 0.53 1.8E-05 39.9 2.3 21 280-302 18-38 (207)
15 3ec2_A DNA replication protein 83.3 0.43 1.5E-05 39.2 1.7 23 279-303 35-57 (180)
16 1z6g_A Guanylate kinase; struc 82.7 0.52 1.8E-05 40.8 2.0 24 277-302 18-41 (218)
17 3tqc_A Pantothenate kinase; bi 82.4 1 3.5E-05 42.5 4.1 48 271-319 80-132 (321)
18 3lnc_A Guanylate kinase, GMP k 81.8 0.47 1.6E-05 40.8 1.4 23 277-301 22-44 (231)
19 4a74_A DNA repair and recombin 80.9 0.46 1.6E-05 39.7 1.0 22 280-303 23-44 (231)
20 1odf_A YGR205W, hypothetical 3 80.7 0.8 2.7E-05 42.2 2.6 21 282-302 29-49 (290)
21 2cvh_A DNA repair and recombin 80.4 0.79 2.7E-05 38.1 2.3 35 280-316 18-52 (220)
22 2ehv_A Hypothetical protein PH 80.1 0.7 2.4E-05 39.1 1.9 35 280-316 28-66 (251)
23 3aez_A Pantothenate kinase; tr 78.8 1.2 4.1E-05 41.4 3.2 53 264-318 67-129 (312)
24 2v9p_A Replication protein E1; 78.8 0.79 2.7E-05 43.0 2.0 26 277-304 121-146 (305)
25 1ixz_A ATP-dependent metallopr 78.8 0.79 2.7E-05 39.7 1.9 25 275-303 44-68 (254)
26 3mcb_B Transcription factor BT 78.5 0.47 1.6E-05 35.3 0.3 31 77-107 14-44 (58)
27 3tif_A Uncharacterized ABC tra 78.3 1 3.5E-05 39.9 2.4 41 277-320 26-70 (235)
28 1n0w_A DNA repair protein RAD5 78.2 0.82 2.8E-05 38.6 1.7 21 280-302 22-42 (243)
29 4e22_A Cytidylate kinase; P-lo 78.0 1.1 3.7E-05 39.7 2.5 22 280-303 25-46 (252)
30 2w0m_A SSO2452; RECA, SSPF, un 77.9 0.86 2.9E-05 37.8 1.8 36 281-318 22-60 (235)
31 2kjq_A DNAA-related protein; s 77.8 1 3.5E-05 37.0 2.2 33 281-315 35-70 (149)
32 2qt1_A Nicotinamide riboside k 77.8 0.97 3.3E-05 37.9 2.1 28 281-310 20-48 (207)
33 2x8a_A Nuclear valosin-contain 77.8 0.83 2.8E-05 41.2 1.8 41 275-320 39-81 (274)
34 2cbz_A Multidrug resistance-as 77.3 1.1 3.9E-05 39.7 2.4 24 277-302 26-49 (237)
35 3b9q_A Chloroplast SRP recepto 75.9 0.77 2.6E-05 42.5 1.0 40 279-320 97-139 (302)
36 2jeo_A Uridine-cytidine kinase 75.6 1.3 4.3E-05 38.7 2.3 25 277-303 20-44 (245)
37 3lkx_A Transcription factor BT 75.2 0.64 2.2E-05 35.4 0.2 31 77-107 14-44 (66)
38 1mv5_A LMRA, multidrug resista 74.6 1.4 4.7E-05 39.1 2.2 40 277-319 23-66 (243)
39 2ff7_A Alpha-hemolysin translo 74.5 1.2 4.2E-05 39.7 1.9 40 277-319 30-73 (247)
40 2pcj_A ABC transporter, lipopr 74.2 1.2 3.9E-05 39.2 1.7 40 277-319 25-68 (224)
41 2dr3_A UPF0273 protein PH0284; 74.1 1.1 3.9E-05 37.7 1.5 35 280-316 21-58 (247)
42 2ghi_A Transport protein; mult 73.9 1.5 5.3E-05 39.4 2.4 39 277-319 41-83 (260)
43 2pze_A Cystic fibrosis transme 73.8 1.3 4.5E-05 39.0 1.9 24 277-302 29-52 (229)
44 2qmh_A HPR kinase/phosphorylas 73.7 1.2 4.2E-05 40.2 1.7 47 266-320 21-67 (205)
45 1b0u_A Histidine permease; ABC 73.7 1.6 5.3E-05 39.4 2.4 40 277-319 27-70 (262)
46 3bos_A Putative DNA replicatio 73.6 1.5 5.1E-05 36.4 2.1 22 280-303 50-71 (242)
47 1rj9_A FTSY, signal recognitio 72.9 0.82 2.8E-05 42.4 0.4 37 281-320 101-141 (304)
48 1iy2_A ATP-dependent metallopr 72.6 1.5 5E-05 38.8 1.9 25 275-303 68-92 (278)
49 2ixe_A Antigen peptide transpo 72.4 1.8 6E-05 39.3 2.4 40 277-319 40-83 (271)
50 1ji0_A ABC transporter; ATP bi 72.0 1.5 5.3E-05 38.8 1.9 40 277-319 27-70 (240)
51 1htw_A HI0065; nucleotide-bind 71.8 1.7 5.7E-05 36.5 2.0 22 278-301 29-50 (158)
52 2olj_A Amino acid ABC transpor 71.8 1.8 6.3E-05 39.3 2.4 40 277-319 45-88 (263)
53 1lv7_A FTSH; alpha/beta domain 71.6 1.5 5.2E-05 38.0 1.8 24 275-302 40-63 (257)
54 3ney_A 55 kDa erythrocyte memb 71.4 2 6.9E-05 37.8 2.5 20 281-302 18-37 (197)
55 2zu0_C Probable ATP-dependent 71.4 1.9 6.5E-05 38.9 2.4 24 277-302 41-64 (267)
56 1nlf_A Regulatory protein REPA 71.3 1.4 4.9E-05 39.0 1.5 22 280-303 28-49 (279)
57 2yyz_A Sugar ABC transporter, 71.2 1.9 6.6E-05 41.2 2.5 40 277-319 24-67 (359)
58 2d2e_A SUFC protein; ABC-ATPas 70.7 1.7 5.8E-05 38.7 1.9 24 277-302 24-47 (250)
59 2it1_A 362AA long hypothetical 70.5 2 6.9E-05 41.1 2.5 40 277-319 24-67 (362)
60 2zts_A Putative uncharacterize 70.3 1.7 5.8E-05 36.6 1.7 21 280-302 28-48 (251)
61 4b4t_J 26S protease regulatory 70.0 1.8 6.2E-05 42.5 2.1 43 254-303 159-201 (405)
62 2vp4_A Deoxynucleoside kinase; 69.9 2.8 9.7E-05 36.2 3.1 34 285-319 21-54 (230)
63 2qz4_A Paraplegin; AAA+, SPG7, 69.7 1.8 6.3E-05 36.9 1.8 25 275-303 34-58 (262)
64 1cr0_A DNA primase/helicase; R 69.7 1.9 6.6E-05 38.3 2.0 37 280-318 33-73 (296)
65 1gvn_B Zeta; postsegregational 69.6 2.4 8.3E-05 38.5 2.7 19 285-303 34-52 (287)
66 1v43_A Sugar-binding transport 69.6 2.1 7.4E-05 41.1 2.5 40 277-319 32-75 (372)
67 1zu4_A FTSY; GTPase, signal re 69.6 1.2 4.2E-05 41.5 0.8 40 278-319 101-143 (320)
68 2yz2_A Putative ABC transporte 69.3 2.3 7.8E-05 38.3 2.4 40 277-319 28-71 (266)
69 1z47_A CYSA, putative ABC-tran 68.9 1.9 6.6E-05 41.2 2.0 40 277-319 36-79 (355)
70 1g6h_A High-affinity branched- 68.9 2 6.7E-05 38.5 1.9 40 277-319 28-71 (257)
71 1vpl_A ABC transporter, ATP-bi 68.7 2.4 8.1E-05 38.3 2.4 40 277-319 36-79 (256)
72 3fvq_A Fe(3+) IONS import ATP- 68.6 2.1 7.1E-05 41.1 2.1 40 277-319 25-68 (359)
73 3d31_A Sulfate/molybdate ABC t 68.5 1.8 6.1E-05 41.2 1.6 40 277-319 21-64 (348)
74 1sq5_A Pantothenate kinase; P- 68.0 2.3 8E-05 38.8 2.3 18 285-302 81-98 (308)
75 2bbs_A Cystic fibrosis transme 67.8 2.3 7.9E-05 39.2 2.2 24 277-302 59-82 (290)
76 3h4m_A Proteasome-activating n 67.8 2.2 7.4E-05 37.3 1.9 25 276-304 47-71 (285)
77 1g29_1 MALK, maltose transport 67.7 2.1 7.3E-05 41.0 2.0 40 277-319 24-67 (372)
78 1oxx_K GLCV, glucose, ABC tran 67.6 1.7 5.9E-05 41.3 1.3 40 277-319 26-69 (353)
79 1sgw_A Putative ABC transporte 67.4 2 6.8E-05 37.9 1.6 24 277-302 30-53 (214)
80 4b4t_K 26S protease regulatory 67.4 1.8 6.3E-05 42.5 1.5 25 275-303 201-225 (428)
81 2ihy_A ABC transporter, ATP-bi 67.3 2.2 7.4E-05 39.0 1.9 41 277-320 42-86 (279)
82 4b4t_M 26S protease regulatory 67.3 1.9 6.5E-05 42.5 1.6 25 275-303 210-234 (434)
83 1jbk_A CLPB protein; beta barr 67.2 2.6 8.8E-05 33.1 2.1 19 282-302 43-61 (195)
84 4fcw_A Chaperone protein CLPB; 67.2 2.7 9.4E-05 36.9 2.5 27 276-302 39-65 (311)
85 1uj2_A Uridine-cytidine kinase 66.5 2.5 8.7E-05 36.9 2.1 40 282-321 20-68 (252)
86 3e70_C DPA, signal recognition 66.4 1.6 5.4E-05 41.1 0.8 37 280-320 127-168 (328)
87 2qi9_C Vitamin B12 import ATP- 66.3 2.4 8.1E-05 38.1 1.9 39 277-319 21-63 (249)
88 2eyu_A Twitching motility prot 66.2 2.6 9E-05 38.0 2.2 39 280-320 23-65 (261)
89 2p65_A Hypothetical protein PF 66.1 2.4 8.1E-05 33.6 1.7 19 282-302 43-61 (187)
90 4b4t_L 26S protease subunit RP 65.9 2.1 7.2E-05 42.2 1.6 43 254-303 192-234 (437)
91 3syl_A Protein CBBX; photosynt 65.8 3 0.0001 36.7 2.5 26 275-302 59-85 (309)
92 2nq2_C Hypothetical ABC transp 65.7 2.5 8.4E-05 38.0 1.9 24 277-302 26-49 (253)
93 3gd7_A Fusion complex of cysti 65.1 2.7 9.1E-05 40.7 2.1 42 277-320 42-85 (390)
94 3rlf_A Maltose/maltodextrin im 65.1 2.9 9.8E-05 40.5 2.3 41 277-320 24-68 (381)
95 3b85_A Phosphate starvation-in 64.9 2.9 0.0001 36.5 2.2 21 280-302 20-40 (208)
96 3gfo_A Cobalt import ATP-bindi 64.7 2.5 8.6E-05 38.7 1.8 40 277-319 29-72 (275)
97 2r62_A Cell division protease 64.6 1.5 5.3E-05 38.0 0.3 24 275-302 39-62 (268)
98 3kta_A Chromosome segregation 64.0 1.8 6.3E-05 35.2 0.7 16 284-301 28-43 (182)
99 1m7g_A Adenylylsulfate kinase; 63.9 3.2 0.00011 35.1 2.2 39 279-319 22-65 (211)
100 3nh6_A ATP-binding cassette SU 63.7 2.3 8E-05 39.6 1.4 41 277-320 75-119 (306)
101 4g1u_C Hemin import ATP-bindin 62.9 2.8 9.6E-05 37.9 1.7 41 277-320 32-76 (266)
102 2px0_A Flagellar biosynthesis 62.7 3 0.0001 38.3 2.0 37 281-319 104-144 (296)
103 3nwj_A ATSK2; P loop, shikimat 62.5 3.2 0.00011 37.5 2.0 28 281-310 47-74 (250)
104 2og2_A Putative signal recogni 62.4 3.3 0.00011 39.6 2.2 40 279-320 154-196 (359)
105 2qby_A CDC6 homolog 1, cell di 62.4 3.3 0.00011 36.9 2.0 22 279-302 42-63 (386)
106 1l8q_A Chromosomal replication 62.3 3.7 0.00013 36.9 2.4 20 282-303 37-56 (324)
107 1ls1_A Signal recognition part 62.2 1.9 6.5E-05 39.5 0.5 38 281-320 97-137 (295)
108 2pjz_A Hypothetical protein ST 61.9 3.6 0.00012 37.3 2.3 23 277-302 26-48 (263)
109 3lda_A DNA repair protein RAD5 61.9 2.7 9.3E-05 40.6 1.5 21 280-302 176-196 (400)
110 1vma_A Cell division protein F 61.7 3.6 0.00012 38.3 2.3 37 281-319 103-142 (306)
111 2p5t_B PEZT; postsegregational 61.1 3.4 0.00012 36.3 1.9 35 282-319 32-68 (253)
112 4a82_A Cystic fibrosis transme 61.0 3.8 0.00013 40.8 2.4 41 277-320 362-406 (578)
113 1u94_A RECA protein, recombina 60.9 3 0.0001 39.6 1.7 34 280-315 61-97 (356)
114 3cf0_A Transitional endoplasmi 60.7 4.2 0.00014 36.6 2.5 20 282-303 49-68 (301)
115 2chg_A Replication factor C sm 60.3 3.7 0.00013 33.0 1.8 16 285-302 41-56 (226)
116 1v5w_A DMC1, meiotic recombina 60.3 3.6 0.00012 38.3 2.0 21 280-302 120-140 (343)
117 3b60_A Lipid A export ATP-bind 59.9 3.8 0.00013 40.8 2.2 41 277-320 364-408 (582)
118 2v1u_A Cell division control p 59.8 3.5 0.00012 36.8 1.7 22 279-302 41-62 (387)
119 3bh0_A DNAB-like replicative h 59.7 4.1 0.00014 37.3 2.2 34 280-315 66-102 (315)
120 2w58_A DNAI, primosome compone 59.7 4.6 0.00016 33.4 2.4 19 283-303 55-73 (202)
121 3tui_C Methionine import ATP-b 59.3 4.3 0.00015 39.1 2.4 41 277-320 49-93 (366)
122 2yl4_A ATP-binding cassette SU 59.0 4.2 0.00014 40.6 2.4 41 277-320 365-409 (595)
123 3b5x_A Lipid A export ATP-bind 58.8 4.2 0.00014 40.5 2.3 40 277-319 364-407 (582)
124 1pui_A ENGB, probable GTP-bind 58.1 5.2 0.00018 32.8 2.4 23 278-302 22-44 (210)
125 4b4t_H 26S protease regulatory 57.9 2.9 9.9E-05 41.9 1.0 26 274-303 237-262 (467)
126 3b9p_A CG5977-PA, isoform A; A 57.8 2.7 9.2E-05 37.0 0.6 20 282-303 54-73 (297)
127 2bbw_A Adenylate kinase 4, AK4 57.6 4.2 0.00014 35.2 1.8 19 282-302 27-45 (246)
128 1pzn_A RAD51, DNA repair and r 57.5 3 0.0001 39.1 0.9 22 280-303 129-150 (349)
129 1tf7_A KAIC; homohexamer, hexa 57.1 3.4 0.00011 40.6 1.3 22 280-303 37-58 (525)
130 2yhs_A FTSY, cell division pro 56.9 3.3 0.00011 41.9 1.2 40 278-319 289-331 (503)
131 2z43_A DNA repair and recombin 56.6 3.9 0.00013 37.5 1.5 21 280-302 105-125 (324)
132 4b4t_I 26S protease regulatory 56.4 3.8 0.00013 40.8 1.5 25 275-303 211-235 (437)
133 2f6r_A COA synthase, bifunctio 55.9 5.4 0.00018 35.9 2.3 36 282-319 73-108 (281)
134 1fnn_A CDC6P, cell division co 55.5 5 0.00017 36.0 2.0 21 280-302 40-62 (389)
135 3qf4_A ABC transporter, ATP-bi 55.2 5.3 0.00018 40.0 2.3 41 277-320 364-408 (587)
136 2i1q_A DNA repair and recombin 54.9 4.1 0.00014 36.9 1.4 21 280-302 96-116 (322)
137 1njg_A DNA polymerase III subu 54.9 3.3 0.00011 33.6 0.7 17 284-302 47-63 (250)
138 1lw7_A Transcriptional regulat 54.4 4.4 0.00015 37.6 1.5 37 19-57 4-40 (365)
139 3t15_A Ribulose bisphosphate c 54.1 3.3 0.00011 37.4 0.6 25 275-303 31-55 (293)
140 1svm_A Large T antigen; AAA+ f 54.1 5.6 0.00019 38.2 2.3 24 278-303 165-188 (377)
141 2cdn_A Adenylate kinase; phosp 53.1 5.9 0.0002 32.9 2.0 29 286-314 22-50 (201)
142 3a8t_A Adenylate isopentenyltr 52.9 6.2 0.00021 37.8 2.3 19 286-304 42-60 (339)
143 3qf4_B Uncharacterized ABC tra 52.3 7 0.00024 39.2 2.7 42 276-320 375-420 (598)
144 1j8m_F SRP54, signal recogniti 52.2 3.8 0.00013 37.8 0.7 36 282-319 98-136 (297)
145 2zr9_A Protein RECA, recombina 52.2 5 0.00017 37.8 1.5 35 280-316 59-96 (349)
146 1ko7_A HPR kinase/phosphatase; 52.1 3 0.0001 39.5 -0.0 46 267-320 132-177 (314)
147 3ux8_A Excinuclease ABC, A sub 51.4 5.7 0.0002 40.2 1.9 24 277-302 343-366 (670)
148 1knx_A Probable HPR(Ser) kinas 51.4 3.7 0.00013 38.9 0.5 79 229-320 102-180 (312)
149 4gzl_A RAS-related C3 botulinu 51.4 6.3 0.00021 32.7 1.9 31 268-301 17-47 (204)
150 1d2n_A N-ethylmaleimide-sensit 51.4 4 0.00014 35.7 0.7 19 283-303 65-83 (272)
151 3cr8_A Sulfate adenylyltranfer 50.8 4.2 0.00014 41.1 0.8 38 280-319 367-409 (552)
152 3eie_A Vacuolar protein sortin 50.7 4.1 0.00014 37.0 0.6 19 283-303 52-70 (322)
153 3uk6_A RUVB-like 2; hexameric 50.7 6.4 0.00022 35.5 1.9 20 282-303 70-89 (368)
154 2dhr_A FTSH; AAA+ protein, hex 50.3 6.1 0.00021 39.4 1.9 25 275-303 59-83 (499)
155 1sxj_C Activator 1 40 kDa subu 49.9 6.8 0.00023 35.5 2.0 14 290-303 52-65 (340)
156 3ld9_A DTMP kinase, thymidylat 49.8 7.6 0.00026 34.6 2.3 20 283-302 20-39 (223)
157 3hws_A ATP-dependent CLP prote 49.7 4.3 0.00015 37.3 0.7 15 290-304 57-71 (363)
158 2ce7_A Cell division protein F 49.6 6.3 0.00022 39.0 1.9 24 275-302 44-67 (476)
159 2gza_A Type IV secretion syste 49.0 5.3 0.00018 37.5 1.2 21 280-302 173-193 (361)
160 3n70_A Transport activator; si 48.8 8.5 0.00029 30.7 2.2 20 282-303 24-43 (145)
161 1xwi_A SKD1 protein; VPS4B, AA 48.7 4.6 0.00016 37.0 0.6 19 283-303 46-64 (322)
162 2qby_B CDC6 homolog 3, cell di 47.9 7.7 0.00026 34.9 2.0 19 282-302 45-63 (384)
163 2z4s_A Chromosomal replication 47.9 8.7 0.0003 37.0 2.5 32 282-315 130-166 (440)
164 1qhl_A Protein (cell division 47.8 3.7 0.00013 36.7 -0.1 28 291-319 34-65 (227)
165 1p5z_B DCK, deoxycytidine kina 47.6 8.2 0.00028 33.7 2.1 29 283-311 23-52 (263)
166 2onk_A Molybdate/tungstate ABC 47.6 7.4 0.00025 34.6 1.8 34 283-319 25-62 (240)
167 3zvl_A Bifunctional polynucleo 47.5 9 0.00031 36.6 2.5 27 282-310 258-284 (416)
168 2ewv_A Twitching motility prot 47.5 7.5 0.00026 36.8 1.9 39 280-320 134-176 (372)
169 3hr8_A Protein RECA; alpha and 47.5 6.2 0.00021 37.7 1.4 22 280-303 59-80 (356)
170 1ofh_A ATP-dependent HSL prote 47.3 5 0.00017 34.9 0.7 18 283-302 51-68 (310)
171 3co5_A Putative two-component 45.9 4.8 0.00016 32.2 0.3 21 282-304 27-47 (143)
172 1xp8_A RECA protein, recombina 45.7 8 0.00027 36.8 1.8 21 280-302 72-92 (366)
173 3pfi_A Holliday junction ATP-d 45.1 5.7 0.00019 35.6 0.7 18 285-304 58-75 (338)
174 4f4c_A Multidrug resistance pr 44.9 7.5 0.00026 42.9 1.7 26 277-304 439-464 (1321)
175 4hvk_A Probable cysteine desul 44.7 19 0.00065 31.4 4.0 105 31-161 46-156 (382)
176 1w1w_A Structural maintenance 44.4 12 0.00042 35.4 2.9 19 281-301 25-43 (430)
177 2dpy_A FLII, flagellum-specifi 43.8 8.4 0.00029 37.6 1.7 36 279-317 154-193 (438)
178 2hf9_A Probable hydrogenase ni 43.8 4.6 0.00016 33.7 -0.1 34 287-320 41-76 (226)
179 2q6t_A DNAB replication FORK h 43.8 9.4 0.00032 36.6 2.0 20 281-302 199-218 (444)
180 2qgz_A Helicase loader, putati 43.5 10 0.00036 34.6 2.2 20 282-303 152-171 (308)
181 3d6k_A Putative aminotransfera 42.4 36 0.0012 31.2 5.7 104 30-161 78-197 (422)
182 3ux8_A Excinuclease ABC, A sub 42.4 9.5 0.00032 38.6 1.9 23 277-301 39-61 (670)
183 3m6a_A ATP-dependent protease 42.3 11 0.00037 37.4 2.3 21 281-303 107-127 (543)
184 2vhj_A Ntpase P4, P4; non- hyd 41.9 7.8 0.00027 37.2 1.1 22 280-303 121-142 (331)
185 2r6a_A DNAB helicase, replicat 41.9 11 0.00038 36.1 2.2 36 280-317 201-240 (454)
186 2ffh_A Protein (FFH); SRP54, s 41.9 8.1 0.00028 37.8 1.2 38 281-320 97-137 (425)
187 1yqt_A RNAse L inhibitor; ATP- 41.8 12 0.0004 37.3 2.4 21 280-302 45-65 (538)
188 2qp9_X Vacuolar protein sortin 41.6 6.9 0.00023 36.4 0.7 17 285-303 87-103 (355)
189 3ozx_A RNAse L inhibitor; ATP 41.5 10 0.00035 38.0 1.9 21 280-302 292-312 (538)
190 1sxj_E Activator 1 40 kDa subu 41.1 8.6 0.00029 34.4 1.2 16 285-302 39-54 (354)
191 2ga8_A Hypothetical 39.9 kDa p 41.1 13 0.00044 36.0 2.5 22 281-302 21-42 (359)
192 1hqc_A RUVB; extended AAA-ATPa 41.0 6.9 0.00024 34.5 0.6 19 283-303 39-57 (324)
193 1oix_A RAS-related protein RAB 40.9 14 0.00049 30.2 2.4 19 284-302 29-47 (191)
194 2npi_A Protein CLP1; CLP1-PCF1 40.8 9.2 0.00031 37.6 1.5 40 275-316 131-175 (460)
195 4eaq_A DTMP kinase, thymidylat 40.8 13 0.00043 32.5 2.2 31 285-315 27-59 (229)
196 1um8_A ATP-dependent CLP prote 40.7 13 0.00043 34.2 2.3 19 283-303 73-91 (376)
197 3jvv_A Twitching mobility prot 40.5 9.9 0.00034 36.0 1.6 36 286-321 125-164 (356)
198 2vf7_A UVRA2, excinuclease ABC 40.5 11 0.00036 40.3 1.9 24 277-302 31-54 (842)
199 3d8b_A Fidgetin-like protein 1 40.4 7.4 0.00025 36.0 0.7 20 282-303 117-136 (357)
200 3llm_A ATP-dependent RNA helic 40.2 12 0.0004 32.2 1.8 15 286-300 78-92 (235)
201 3cf2_A TER ATPase, transitiona 40.1 9.3 0.00032 40.6 1.4 32 275-310 233-264 (806)
202 2c9o_A RUVB-like 1; hexameric 40.0 7.5 0.00026 37.3 0.7 14 290-303 69-82 (456)
203 3ihw_A Centg3; RAS, centaurin, 39.9 17 0.0006 29.5 2.8 22 280-301 16-37 (184)
204 1sxj_D Activator 1 41 kDa subu 39.5 7.9 0.00027 34.4 0.7 17 285-303 61-77 (353)
205 1u0l_A Probable GTPase ENGC; p 39.5 14 0.00047 33.6 2.3 18 282-301 169-186 (301)
206 2pt7_A CAG-ALFA; ATPase, prote 39.4 11 0.00037 35.1 1.6 19 281-301 170-188 (330)
207 3ppl_A Aspartate aminotransfer 39.4 88 0.003 28.5 7.7 39 29-68 79-119 (427)
208 3pih_A Uvrabc system protein A 38.8 11 0.00036 40.7 1.6 24 277-302 19-42 (916)
209 3u61_B DNA polymerase accessor 38.8 8.2 0.00028 34.4 0.7 13 291-303 55-67 (324)
210 1r6b_X CLPA protein; AAA+, N-t 38.4 15 0.0005 37.4 2.5 29 275-303 479-507 (758)
211 1p9r_A General secretion pathw 38.3 20 0.00068 34.8 3.3 37 281-320 166-206 (418)
212 3hu3_A Transitional endoplasmi 38.3 12 0.00043 36.8 1.9 24 276-303 234-257 (489)
213 3te6_A Regulatory protein SIR3 38.1 10 0.00035 35.6 1.3 24 277-302 40-63 (318)
214 1g8p_A Magnesium-chelatase 38 38.1 7.4 0.00025 34.6 0.2 16 285-302 48-63 (350)
215 4dq6_A Putative pyridoxal phos 37.9 56 0.0019 28.9 6.0 93 44-161 88-182 (391)
216 3ml6_A Chimeric complex betwee 37.8 37 0.0013 32.7 5.2 61 30-99 41-105 (385)
217 2atv_A RERG, RAS-like estrogen 37.6 16 0.00053 29.7 2.2 40 255-301 6-45 (196)
218 1tue_A Replication protein E1; 37.5 13 0.00045 33.6 1.8 17 286-302 60-76 (212)
219 3tlx_A Adenylate kinase 2; str 37.4 15 0.0005 32.1 2.1 18 286-303 31-48 (243)
220 1tf7_A KAIC; homohexamer, hexa 37.4 10 0.00035 37.1 1.2 36 280-318 279-319 (525)
221 3k1j_A LON protease, ATP-depen 37.1 13 0.00046 37.0 2.0 13 291-303 67-79 (604)
222 4f4c_A Multidrug resistance pr 36.9 13 0.00044 41.1 2.0 12 138-149 598-609 (1321)
223 1yqt_A RNAse L inhibitor; ATP- 36.7 13 0.00046 36.9 1.9 21 280-302 310-330 (538)
224 1sxj_A Activator 1 95 kDa subu 36.7 17 0.00057 35.5 2.5 30 283-314 78-107 (516)
225 2qen_A Walker-type ATPase; unk 36.4 16 0.00055 32.0 2.2 18 283-302 32-49 (350)
226 2ew1_A RAS-related protein RAB 36.1 19 0.00064 30.1 2.5 35 263-302 10-44 (201)
227 3ugs_B Undecaprenyl pyrophosph 36.1 53 0.0018 30.0 5.6 48 23-70 99-151 (225)
228 2zan_A Vacuolar protein sortin 35.8 9.6 0.00033 36.6 0.7 19 283-303 168-186 (444)
229 3pvs_A Replication-associated 35.7 9.7 0.00033 37.0 0.7 19 284-304 52-70 (447)
230 2bjv_A PSP operon transcriptio 35.4 9.9 0.00034 32.9 0.6 18 283-302 30-47 (265)
231 2yv5_A YJEQ protein; hydrolase 35.3 18 0.00061 33.0 2.4 18 282-301 165-182 (302)
232 1e69_A Chromosome segregation 34.9 10 0.00034 34.6 0.6 16 284-301 26-41 (322)
233 3aow_A Putative uncharacterize 34.9 42 0.0014 31.5 5.0 110 29-161 119-235 (448)
234 3vfd_A Spastin; ATPase, microt 34.9 10 0.00035 35.3 0.7 21 282-304 148-168 (389)
235 3con_A GTPase NRAS; structural 34.8 20 0.00069 28.6 2.4 20 283-302 20-39 (190)
236 3l8a_A METC, putative aminotra 34.6 34 0.0012 31.3 4.1 94 44-161 117-212 (421)
237 1eg5_A Aminotransferase; PLP-d 34.6 54 0.0018 28.7 5.3 36 31-67 47-82 (384)
238 2qag_B Septin-6, protein NEDD5 34.4 20 0.00069 35.2 2.7 23 279-301 37-59 (427)
239 1m2o_B GTP-binding protein SAR 34.2 18 0.00061 29.5 2.0 16 286-301 25-40 (190)
240 3j16_B RLI1P; ribosome recycli 34.2 18 0.00063 36.8 2.5 20 280-301 101-120 (608)
241 2o5v_A DNA replication and rep 33.8 18 0.00063 34.3 2.2 19 280-301 25-43 (359)
242 3k9g_A PF-32 protein; ssgcid, 33.7 8.3 0.00028 33.4 -0.1 31 289-320 33-66 (267)
243 1z06_A RAS-related protein RAB 33.6 22 0.00076 28.5 2.4 21 281-301 17-37 (189)
244 1f2t_A RAD50 ABC-ATPase; DNA d 33.5 12 0.0004 30.6 0.7 15 284-300 25-39 (149)
245 2ged_A SR-beta, signal recogni 33.4 17 0.00059 29.1 1.7 19 283-301 47-65 (193)
246 3lv8_A DTMP kinase, thymidylat 33.3 14 0.00048 33.0 1.3 35 258-301 10-44 (236)
247 2ygr_A Uvrabc system protein A 33.3 14 0.00049 40.2 1.6 24 277-302 41-64 (993)
248 1qvr_A CLPB protein; coiled co 33.1 19 0.00065 37.5 2.4 27 276-302 580-606 (854)
249 3g5u_A MCG1178, multidrug resi 33.1 18 0.00061 39.9 2.3 41 277-320 411-455 (1284)
250 3bk7_A ABC transporter ATP-bin 33.1 19 0.00066 36.5 2.4 26 275-302 109-135 (607)
251 3j16_B RLI1P; ribosome recycli 33.0 19 0.00067 36.6 2.4 19 282-302 378-396 (608)
252 1w5s_A Origin recognition comp 32.9 17 0.00059 32.9 1.8 21 282-302 50-70 (412)
253 1jr3_A DNA polymerase III subu 32.9 11 0.00039 33.6 0.7 16 285-302 41-56 (373)
254 3pqc_A Probable GTP-binding pr 32.8 16 0.00056 28.9 1.5 19 283-301 22-40 (195)
255 2oap_1 GSPE-2, type II secreti 32.6 20 0.00067 35.7 2.3 18 281-300 259-276 (511)
256 1ypw_A Transitional endoplasmi 32.6 17 0.0006 37.9 2.0 21 282-304 238-258 (806)
257 3bgw_A DNAB-like replicative h 32.5 18 0.00061 35.1 2.0 35 280-316 195-232 (444)
258 2chq_A Replication factor C sm 32.5 12 0.00041 32.5 0.7 16 285-302 41-56 (319)
259 2r6f_A Excinuclease ABC subuni 32.2 16 0.00053 39.9 1.6 24 277-302 39-62 (972)
260 1g8f_A Sulfate adenylyltransfe 32.1 17 0.00057 36.6 1.7 22 281-304 394-415 (511)
261 2obl_A ESCN; ATPase, hydrolase 31.1 15 0.00053 34.5 1.2 21 280-302 69-89 (347)
262 2r44_A Uncharacterized protein 31.0 9.6 0.00033 34.1 -0.2 18 284-303 48-65 (331)
263 3euc_A Histidinol-phosphate am 31.0 1.5E+02 0.0051 26.1 7.6 104 30-160 69-174 (367)
264 1gd9_A Aspartate aminotransfer 30.8 85 0.0029 27.9 6.0 105 30-161 65-178 (389)
265 1svi_A GTP-binding protein YSX 30.6 20 0.00068 28.7 1.7 19 283-301 22-40 (195)
266 2fz4_A DNA repair protein RAD2 30.6 20 0.0007 31.1 1.9 13 291-303 115-127 (237)
267 3ly1_A Putative histidinol-pho 30.5 97 0.0033 27.0 6.3 104 31-161 54-159 (354)
268 3io5_A Recombination and repai 30.5 17 0.00058 35.0 1.4 20 280-302 27-46 (333)
269 3get_A Histidinol-phosphate am 30.0 64 0.0022 28.4 5.1 118 31-175 68-197 (365)
270 3bk7_A ABC transporter ATP-bin 29.9 20 0.00069 36.4 1.9 21 280-302 380-400 (607)
271 2av4_A Thioredoxin-like protei 29.6 16 0.00054 31.8 0.9 28 125-152 126-153 (160)
272 3euj_A Chromosome partition pr 29.6 25 0.00086 35.0 2.5 38 279-320 27-68 (483)
273 3kl4_A SRP54, signal recogniti 29.4 24 0.00081 34.6 2.3 36 284-319 97-135 (433)
274 1fsh_A Dishevelled-1; three-he 29.2 40 0.0014 26.8 3.2 49 30-87 53-105 (105)
275 2rcn_A Probable GTPase ENGC; Y 29.1 25 0.00086 33.6 2.3 19 281-301 214-232 (358)
276 2zyj_A Alpha-aminodipate amino 29.0 38 0.0013 30.5 3.4 105 29-161 75-181 (397)
277 3e05_A Precorrin-6Y C5,15-meth 29.0 86 0.0029 25.6 5.4 40 32-71 120-160 (204)
278 3cf2_A TER ATPase, transitiona 28.7 23 0.00079 37.6 2.2 22 82-103 164-185 (806)
279 2fna_A Conserved hypothetical 28.6 21 0.00073 31.2 1.6 17 284-302 32-48 (357)
280 3cmw_A Protein RECA, recombina 28.5 20 0.00069 41.2 1.8 21 280-302 1080-1100(1706)
281 1q57_A DNA primase/helicase; d 28.4 18 0.00061 35.0 1.2 35 280-316 240-278 (503)
282 3pxi_A Negative regulator of g 28.2 27 0.00092 35.6 2.5 26 276-303 513-540 (758)
283 3v9p_A DTMP kinase, thymidylat 28.0 19 0.00063 32.0 1.1 21 283-303 24-44 (227)
284 3ozx_A RNAse L inhibitor; ATP 27.9 27 0.00094 34.8 2.5 25 276-302 18-43 (538)
285 1iqp_A RFCS; clamp loader, ext 27.5 23 0.00079 30.8 1.6 13 290-302 52-64 (327)
286 3dzz_A Putative pyridoxal 5'-p 27.4 1E+02 0.0035 27.1 5.9 109 30-161 64-178 (391)
287 2h17_A ADP-ribosylation factor 27.3 23 0.00078 28.3 1.5 21 281-301 18-38 (181)
288 1ypw_A Transitional endoplasmi 27.2 16 0.00055 38.2 0.7 20 84-103 166-185 (806)
289 2ph1_A Nucleotide-binding prot 27.2 14 0.00047 32.3 0.1 30 291-320 26-58 (262)
290 3qkt_A DNA double-strand break 27.1 17 0.00058 33.4 0.7 17 284-302 25-41 (339)
291 4a1f_A DNAB helicase, replicat 27.1 26 0.00088 33.2 2.0 34 281-316 45-81 (338)
292 3cbq_A GTP-binding protein REM 27.0 33 0.0011 28.2 2.5 21 282-302 21-41 (195)
293 2il1_A RAB12; G-protein, GDP, 26.9 37 0.0013 27.5 2.7 21 282-302 24-44 (192)
294 3lvm_A Cysteine desulfurase; s 26.8 52 0.0018 29.6 3.9 37 31-68 71-107 (423)
295 3fkq_A NTRC-like two-domain pr 26.8 14 0.00049 34.4 0.2 28 291-318 151-181 (373)
296 4aby_A DNA repair protein RECN 26.7 16 0.00055 33.8 0.5 22 277-301 56-77 (415)
297 1svv_A Threonine aldolase; str 26.3 1.1E+02 0.0037 26.5 5.7 43 28-71 49-91 (359)
298 1z6t_A APAF-1, apoptotic prote 26.3 29 0.00099 33.5 2.2 18 285-302 148-165 (591)
299 2i7t_A Cleavage and polyadenyl 26.0 76 0.0026 30.2 5.1 36 30-69 399-434 (459)
300 3llu_A RAS-related GTP-binding 25.9 23 0.00079 28.8 1.3 22 280-301 16-37 (196)
301 2wsm_A Hydrogenase expression/ 25.8 28 0.00097 28.7 1.8 34 286-319 32-67 (221)
302 3vax_A Putative uncharacterize 25.8 25 0.00086 31.4 1.6 40 31-71 66-109 (400)
303 3pxg_A Negative regulator of g 25.6 18 0.00061 35.0 0.6 12 291-302 208-219 (468)
304 3op7_A Aminotransferase class 25.5 37 0.0013 30.1 2.6 105 30-161 65-172 (375)
305 1sxj_B Activator 1 37 kDa subu 25.4 23 0.00078 30.8 1.2 16 285-302 45-60 (323)
306 3lxx_A GTPase IMAP family memb 25.3 36 0.0012 28.9 2.4 23 279-301 24-46 (239)
307 2qm8_A GTPase/ATPase; G protei 25.0 36 0.0012 31.6 2.5 40 279-320 52-94 (337)
308 2xtp_A GTPase IMAP family memb 25.0 30 0.001 29.7 1.9 23 279-301 17-39 (260)
309 3dxy_A TRNA (guanine-N(7)-)-me 24.9 94 0.0032 26.5 5.1 61 35-96 131-192 (218)
310 2oil_A CATX-8, RAS-related pro 24.9 45 0.0015 26.7 2.8 20 282-301 23-42 (193)
311 1f6b_A SAR1; gtpases, N-termin 24.8 28 0.00094 28.6 1.6 16 286-301 27-42 (198)
312 3kgw_A Alanine-glyoxylate amin 24.7 1.2E+02 0.0042 26.5 5.9 110 29-161 57-166 (393)
313 2o52_A RAS-related protein RAB 24.6 38 0.0013 27.7 2.4 19 283-301 24-42 (200)
314 3th5_A RAS-related C3 botulinu 30.3 16 0.00054 29.9 0.0 31 268-301 17-47 (204)
315 2vf7_A UVRA2, excinuclease ABC 24.5 29 0.00098 37.1 1.9 25 277-303 518-542 (842)
316 1g41_A Heat shock protein HSLU 24.3 20 0.00068 35.4 0.7 17 287-303 53-69 (444)
317 2z61_A Probable aspartate amin 24.2 94 0.0032 27.5 5.0 42 30-71 68-114 (370)
318 1m8p_A Sulfate adenylyltransfe 24.2 35 0.0012 34.4 2.4 33 281-315 395-431 (573)
319 3oes_A GTPase rhebl1; small GT 24.1 37 0.0013 27.6 2.2 20 282-301 22-41 (201)
320 1wb9_A DNA mismatch repair pro 24.1 34 0.0012 36.1 2.4 20 280-301 605-624 (800)
321 3ihj_A Alanine aminotransferas 24.0 1.3E+02 0.0043 28.9 6.2 123 30-174 131-279 (498)
322 3f9t_A TDC, L-tyrosine decarbo 23.9 2.7E+02 0.0092 24.1 7.9 38 31-69 72-109 (397)
323 4eb5_A Probable cysteine desul 23.7 82 0.0028 27.6 4.5 120 29-173 44-177 (382)
324 1g60_A Adenine-specific methyl 23.5 62 0.0021 28.5 3.7 40 32-71 52-91 (260)
325 1u0j_A DNA replication protein 23.4 28 0.00097 32.1 1.5 20 284-303 104-123 (267)
326 2xxa_A Signal recognition part 23.4 39 0.0013 32.8 2.5 34 286-319 102-139 (433)
327 2j37_W Signal recognition part 23.3 30 0.001 34.5 1.8 38 282-319 99-139 (504)
328 1x6v_B Bifunctional 3'-phospho 23.2 37 0.0013 35.0 2.4 37 281-319 51-91 (630)
329 3l0i_B RAS-related protein RAB 23.1 49 0.0017 26.8 2.8 21 282-302 31-51 (199)
330 3g5u_A MCG1178, multidrug resi 23.0 35 0.0012 37.6 2.3 41 277-320 1054-1098(1284)
331 3ffh_A Histidinol-phosphate am 23.0 78 0.0027 27.8 4.2 43 29-72 68-110 (363)
332 3ele_A Amino transferase; RER0 23.0 1.7E+02 0.0057 26.1 6.5 104 31-161 79-190 (398)
333 2iw3_A Elongation factor 3A; a 22.9 32 0.0011 37.5 1.9 23 279-303 458-480 (986)
334 3qks_A DNA double-strand break 22.7 23 0.0008 30.1 0.7 15 284-300 25-39 (203)
335 4dhe_A Probable GTP-binding pr 22.6 22 0.00076 29.2 0.5 21 281-301 26-46 (223)
336 2p67_A LAO/AO transport system 22.5 42 0.0014 30.9 2.5 40 279-320 53-95 (341)
337 2h57_A ADP-ribosylation factor 22.3 37 0.0013 27.2 1.8 19 283-301 20-38 (190)
338 3c5c_A RAS-like protein 12; GD 22.3 46 0.0016 26.8 2.4 20 282-301 19-38 (187)
339 3pih_A Uvrabc system protein A 22.2 32 0.0011 37.1 1.7 22 278-301 606-627 (916)
340 3kax_A Aminotransferase, class 22.2 1.4E+02 0.0049 26.1 5.8 109 29-161 64-174 (383)
341 1vp4_A Aminotransferase, putat 22.1 52 0.0018 30.1 3.0 109 30-161 87-206 (425)
342 3u7r_A NADPH-dependent FMN red 22.1 3.7E+02 0.013 22.9 9.7 38 122-159 79-120 (190)
343 1c7n_A Cystalysin; transferase 22.1 1.6E+02 0.0055 26.2 6.2 107 30-161 68-182 (399)
344 3pxi_A Negative regulator of g 22.0 23 0.00078 36.1 0.6 15 288-302 205-219 (758)
345 1t9h_A YLOQ, probable GTPase E 22.0 20 0.0007 33.4 0.2 19 281-301 172-190 (307)
346 3ice_A Transcription terminati 21.6 34 0.0012 34.1 1.7 22 281-304 173-194 (422)
347 3rq1_A Aminotransferase class 21.6 2.1E+02 0.0072 25.7 6.9 110 30-161 82-198 (418)
348 1l3i_A Precorrin-6Y methyltran 21.2 93 0.0032 24.3 4.0 41 31-71 111-152 (192)
349 2gxq_A Heat resistant RNA depe 21.1 31 0.0011 28.1 1.1 16 287-302 41-56 (207)
350 3b6e_A Interferon-induced heli 21.1 20 0.00069 29.1 0.0 17 287-303 51-67 (216)
351 3ly5_A ATP-dependent RNA helic 21.1 23 0.00078 31.0 0.3 17 287-303 94-110 (262)
352 3cph_A RAS-related protein SEC 21.0 45 0.0015 27.0 2.1 18 284-301 20-37 (213)
353 2kvc_A Putative uncharacterize 20.8 9.7 0.00033 31.2 -2.0 43 55-97 40-85 (103)
354 1vjo_A Alanine--glyoxylate ami 20.8 1.4E+02 0.0049 26.4 5.5 108 29-160 68-176 (393)
355 1kmj_A Selenocysteine lyase; p 20.7 71 0.0024 28.2 3.5 93 45-161 84-182 (406)
356 3dm5_A SRP54, signal recogniti 20.7 47 0.0016 32.8 2.5 36 284-319 100-138 (443)
357 2v3c_C SRP54, signal recogniti 20.6 31 0.001 33.6 1.1 34 286-319 101-137 (432)
358 3nbx_X ATPase RAVA; AAA+ ATPas 20.5 26 0.00089 34.8 0.6 19 284-304 43-61 (500)
359 1gwn_A RHO-related GTP-binding 20.3 48 0.0016 27.6 2.2 19 283-301 27-45 (205)
360 1ojl_A Transcriptional regulat 20.2 44 0.0015 30.2 2.1 19 282-302 25-43 (304)
361 1qde_A EIF4A, translation init 20.1 33 0.0011 28.4 1.1 15 287-301 54-68 (224)
362 2j1l_A RHO-related GTP-binding 20.1 52 0.0018 27.2 2.4 20 282-301 32-51 (214)
363 1o4s_A Aspartate aminotransfer 20.1 90 0.0031 28.0 4.1 105 30-161 80-192 (389)
364 2b6h_A ADP-ribosylation factor 20.1 53 0.0018 26.7 2.3 19 284-302 29-47 (192)
No 1
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=100.00 E-value=3e-149 Score=1128.52 Aligned_cols=301 Identities=62% Similarity=1.109 Sum_probs=296.9
Q ss_pred ceeeeccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccce
Q psy13078 19 FSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKT 98 (325)
Q Consensus 19 ~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rT 98 (325)
+||++|||++||++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||+||||||||||||+||||||+||
T Consensus 15 ~~v~~g~~~~l~~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~ve~G~~~~L~k~pn~~l~~sdP~DvARve~rT 94 (624)
T 3moe_A 15 AKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKT 94 (624)
T ss_dssp GGEEESCTTTSCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECCCTTCCSCCGGGE
T ss_pred ceeecCChHhcCHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCCEEEeCChhhccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhh
Q psy13078 99 FICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMR 178 (325)
Q Consensus 99 fI~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~ 178 (325)
||||++++||+|++++| +++++|||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||+|||
T Consensus 95 fI~t~~~~da~p~~~~g-~~~~nnwm~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~GSp~s~~GVeiTDS~YVv~smr 173 (624)
T 3moe_A 95 VIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMR 173 (624)
T ss_dssp EEECSSHHHHSCCCSSS-CCSSCCEECHHHHHHHHHTTSTTTTTTSEEEEEEEEESCSSCTTCEEEEEEESCHHHHHHHH
T ss_pred EEecCchhhcCCcccCC-cCcccccCCHHHHHHHHHhhCcccccCCeEEEEeeecCCCCCCccceeEEccCcHHHHHhHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCHHHHHhcCCCCCceeeeeccCCCCCCCCCC-CCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHH
Q psy13078 179 IMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEF-PEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRI 257 (325)
Q Consensus 179 imtR~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~~-~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRi 257 (325)
||||||++|||.|+++ +|||||||||+||++++++ ++|||||+++||+|||++|+|||||||||||||||||||||||
T Consensus 174 IMtR~g~~vld~lg~~-~Fv~clHSvG~pl~~~~~~v~~Wpcnp~k~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRi 252 (624)
T 3moe_A 174 IMTRMGTSVLEALGDG-EFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRI 252 (624)
T ss_dssp HHSEESHHHHHHHTTC-CCEEEEEECSCCSSCSSCCBTTBCCCGGGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHH
T ss_pred HHhhCCHHHHHhhcCC-CeeeeecccCCCCCCCCccCCCCCCCCCceEEEEecccCeEEEecCCcCcchhhhHHHHHHHH
Confidence 9999999999999974 9999999999999999985 5899999999999999999999999999999999999999999
Q ss_pred HhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 258 GSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 258 aS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
||+|||+||||||||||||||||+||++||||||||||||||||||.||+|||||+|||||||-
T Consensus 253 AS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~~Gwkve~vGDDIAw 316 (624)
T 3moe_A 253 ASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAW 316 (624)
T ss_dssp HHHHHHHHTCEEESCEEEEEECTTSCEEEEEEECCTTSSHHHHHTCCCSSTTCEEEEEESSCEE
T ss_pred HHHHhhhcccHHHhHHHheecCCCCcEEEEEEEcccccccccHhhcCCCCCCceeEEecccEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999983
No 2
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=100.00 E-value=9.5e-144 Score=1087.36 Aligned_cols=297 Identities=58% Similarity=1.079 Sum_probs=291.0
Q ss_pred eccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEc
Q psy13078 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 23 ~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
+-|+++||++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||++||||||+||||+||||||+||||||
T Consensus 2 ~~~~~~l~~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~v~~G~~~~L~k~~n~~l~~sdp~DvARve~rTfI~t 81 (608)
T 2faf_A 2 STSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDPRDVARVESKTVLVT 81 (608)
T ss_dssp BSCCTTSCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECTTSBSCEEECCCTTCSSCCGGGEEEEC
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhCCCeeecCCCCCceeccCChhhcceeccceEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCC-CCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhcc
Q psy13078 103 QEKAETVPDT-KPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMT 181 (325)
Q Consensus 103 ~~~~da~p~~-~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imt 181 (325)
++++|++|+| ++|++++|+|||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||+||||||
T Consensus 82 ~~~~dagp~n~~~g~~~~~~nw~~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~gsp~s~~GVeiTDS~YVv~smriMt 161 (608)
T 2faf_A 82 PEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGCMAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMT 161 (608)
T ss_dssp SSGGGTSCCCCTTCCCCCSCCEECHHHHHHHHHHHSTTTTTTSEEEEEEEEESCTTCTTCEEEEEEESCHHHHHHHHHHS
T ss_pred CchhhcCCCCccccccccccccCCHHHHHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHhcCCCCCceeeeeccCCCCCCC-CCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhh
Q psy13078 182 RIGTPVLNLLDADQPFVKALHSVGTPVSGK-HEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGST 260 (325)
Q Consensus 182 R~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~-~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~ 260 (325)
|||++||+.|++ +|||||||||+||+.. +.+++|||||+++||+|||++|+|||||||||||||||||||||||||+
T Consensus 162 R~g~~v~~~lg~--~Fv~~vHSvG~pl~~~~~~~~~WPcn~~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~ 239 (608)
T 2faf_A 162 RVGPAVLQRLDD--DFVRCLHSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASR 239 (608)
T ss_dssp EESHHHHTTCCS--CCEEEEEECSCCSSCSSCCSTTCCCCGGGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHH
T ss_pred hcCHHHHHHhhC--ccceeecccCCcCCcccccCCCCccCCCccEEEEECCCCeEEEecCCcCcchhhhhHHHHHHHHHH
Confidence 999999999988 8999999999999644 5588999999999999999999999999999999999999999999999
Q ss_pred hhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 261 IAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 261 ~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
|||+||||||||||||||||+|+++||||||||||||||||||.|++|||||||||||||-
T Consensus 240 ~ar~EGWLAEHMlIlgvt~p~g~~~yiaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIaw 300 (608)
T 2faf_A 240 MAQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAW 300 (608)
T ss_dssp HHHHHTCEEESCEEEEEECTTSCEEEEEEECSSCTTSCCGGGCCCSSTTCEEEEEESSCEE
T ss_pred HhhhcChHHHHHHHheecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceee
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 3
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=100.00 E-value=6.5e-140 Score=1060.81 Aligned_cols=285 Identities=50% Similarity=0.893 Sum_probs=279.4
Q ss_pred cccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEEcCC
Q psy13078 27 SAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICTQE 104 (325)
Q Consensus 27 ~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t~~ 104 (325)
...|++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++|| .+|||||++||||+||||||+||||||++
T Consensus 14 ~~~n~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~v~~G~~~~L~~~k~~n~~l~~sdp~DvARve~rTfI~t~~ 93 (610)
T 2zci_A 14 PTKNKELLNWIADAVELFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRPNSYLARSNPSDVARVESRTFICSEK 93 (610)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECCTTTSTTCEEECCCGGGSSCCGGGEEECCSS
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhCCCeeecCCCCCCceeecCCChhhcceeccceEEecCc
Confidence 3468899999999999999999999999999999999999999999999 68999999999999999999999999999
Q ss_pred CCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhccccC
Q psy13078 105 KAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIG 184 (325)
Q Consensus 105 ~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imtR~g 184 (325)
++|++|+| |||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||+|||||||||
T Consensus 94 ~~dagptn---------nw~~p~e~~~~l~~~f~G~M~GRTMYViPfsMGP~gsp~s~~GVeiTDS~YVv~smrIMtR~g 164 (610)
T 2zci_A 94 EEDAGPTN---------NWAPPQAMKDEMSKHYAGSMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMG 164 (610)
T ss_dssp TTTTCTTS---------CCCCHHHHHHHHHHHHTTTTTTSEEEEEEEEESCTTCSSCEEEEEEESCHHHHHHHHHHSEES
T ss_pred hhhcCCCc---------CccCHHHHHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHHhcC
Confidence 99999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceeeeeccCCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhh
Q psy13078 185 TPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKR 264 (325)
Q Consensus 185 ~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~ 264 (325)
++||+.|+++++|||||||||+||..+++++.|||||+ +||+|||++|+|||||||||||||||||||||||||++||+
T Consensus 165 ~~v~~~lg~~~~Fv~~vHSvG~pl~~~~~dv~wPc~~~-~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~ 243 (610)
T 2zci_A 165 IEALDKIGANGSFVRCLHSVGAPLEPGQEDVAWPCNDT-KYITQFPETKEIWSYGSGYGGNAILAKKCYALRIASVMARE 243 (610)
T ss_dssp HHHHHHHTTTCCCEEEEEECSCCCCSSCCCCSSCCCSS-CEEEEETTTTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHH
T ss_pred HHHHHHhCCCCCeeeeecccCCcCCCCCcCCCCCCCCc-eEEEEecCcCeEEEecCCcCcchhhhhHHHHHHHHHHHhhh
Confidence 99999999988999999999999998888889999997 89999999999999999999999999999999999999999
Q ss_pred cchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078 265 EGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 265 EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~ 321 (325)
||||||||||||||||+|+++||||||||||||||||||.|++|||||+|||||||-
T Consensus 244 EGWLAEHMlIlgvt~P~g~~~yvaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIaw 300 (610)
T 2zci_A 244 EGWMAEHMLILKLINPEGKAYHIAAAFPSACGKTNLAMITPTIPGWTAQVVGDDIAW 300 (610)
T ss_dssp HTCEEECCEEEEEECSSSCEEEEEEECSSSHHHHHHHTCCCSSTTCEEEEEESSCEE
T ss_pred cChHHHHHHHheecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceee
Confidence 999999999999999999999999999999999999999999999999999999984
No 4
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=100.00 E-value=3.8e-55 Score=441.25 Aligned_cols=237 Identities=17% Similarity=0.132 Sum_probs=211.3
Q ss_pred HHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCC-CCcc
Q psy13078 39 NCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTK-PGVK 117 (325)
Q Consensus 39 e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~-~Gv~ 117 (325)
+.+.||+|++||||+||+|++++ ++++|+..+++ +|+++++|++ ++||++++||||++++.+ |++- +.
T Consensus 5 ~~~~l~~~~~v~~n~~~~~l~e~----a~~~g~g~~~~--~g~~~~~tg~-~tgRsp~~~fIv~~~~~~--~~~~w~~-- 73 (529)
T 1j3b_A 5 EALGIHPKKRVFWNTVSPVLVEH----TLLRGEGLLAH--HGPLVVDTTP-YTGRSPKDKFVVREPEVE--GEIWWGE-- 73 (529)
T ss_dssp GGGTCCCSSCEEESCCHHHHHHH----HHHTTSCEECT--TSCEEECCTT-CCSCCGGGEEEECCTTTT--TTSCBTT--
T ss_pred hhccCCCCCeEEECCChHHHHHH----HHHcCCCEECC--CCCEEeCCCC-cccCCCCceEEeCCCCcC--Ccccccc--
Confidence 35789999999999999998854 88999998874 7999999999 899999999999998877 5531 12
Q ss_pred CCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhcc-c-c----CHH-----
Q psy13078 118 GTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMT-R-I----GTP----- 186 (325)
Q Consensus 118 ~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imt-R-~----g~~----- 186 (325)
.||+.++++.++|.++|.+||+||+|||+||+|| .++++++.+++||||+|++++|++|+ | + +.+
T Consensus 74 ---~n~~~~~e~f~~l~~~~~~~m~gr~lyV~~~~~G-~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~~ 149 (529)
T 1j3b_A 74 ---VNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAG-ADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFV 149 (529)
T ss_dssp ---TBEEECHHHHHHHHHHHHHHHHTSCEEEEEEEEC-SSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCC
T ss_pred ---ccCcCCHHHHHHHHHHHHHHhcCCcEEEEEEeee-CCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccCC
Confidence 2899999999999999999999999999999999 99999999999999999999999999 9 5 444
Q ss_pred -HHHhcCCCCCceeeeeccCCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhc
Q psy13078 187 -VLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKRE 265 (325)
Q Consensus 187 -v~d~l~~~~~Fvr~vHSvG~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~E 265 (325)
+|..+++. +|++|+||+|+ |++ ++|+|+|++++|||+||+|||| +||++||+++++++++
T Consensus 150 pd~~i~~~p-~f~~~~~~~G~-------------~s~-~~i~~~~~~~~i~i~Gt~Y~Ge----~KK~~l~i~~~~~~~~ 210 (529)
T 1j3b_A 150 PGFTVVHAP-YFQAVPERDGT-------------RSE-VFVGISFQRRLVLIVGTKYAGE----IKKSIFTVMNYLMPKR 210 (529)
T ss_dssp CSEEEEEET-TCCCCHHHHCC-------------SSS-CEEEEETTTTEEEEESCCCTHH----HHHHHHHHHHHHGGGG
T ss_pred CCEEEEeCC-CcccCcccCCC-------------CCc-eEEEEECccCEEEEeCCccCcc----hHHHHHHHHHHHHHHC
Confidence 55566654 89999999995 444 7999999999999999999999 8899999999999999
Q ss_pred chhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccc
Q psy13078 266 GWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 266 GWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDI 319 (325)
|||+|||++ +++|+|++.+|.| |||||||||||+ | .. ++||||+
T Consensus 211 G~L~~H~sa--~~~~~g~~~~ffG--lSGtGKTtLs~~-p---~r--~lIgDD~ 254 (529)
T 1j3b_A 211 GVFPMHASA--NVGKEGDVAVFFG--LSGTGKTTLSTD-P---ER--PLIGDDE 254 (529)
T ss_dssp TCEEEECEE--EECTTCCEEEEEE--CTTSCHHHHTCB-T---TB--CEEESSE
T ss_pred CeEecccee--eeCCCCcEEEEEc--cccCChhhHhhc-c---Cc--ceEECch
Confidence 999999996 6799999999998 999999999998 4 33 7999999
No 5
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=99.95 E-value=1.5e-27 Score=241.06 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=198.4
Q ss_pred HHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcC----cccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCC-C
Q psy13078 38 DNCVELCQPSDVHICDGSEREYKELIDLMVKDK----TLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPD-T 112 (325)
Q Consensus 38 ~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G----~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~-~ 112 (325)
.+...|+.|++||++.+ .+| |++++++.| ++.+|.. .|..+ .....+++|...++||+.++..+.-.. .
T Consensus 12 ~~~~gi~~~~~v~~n~~-~~~---L~e~al~~~~~~~eeg~l~~-~Gal~-~~tg~~tgRsp~dk~Iv~~~~~~~~i~w~ 85 (540)
T 2olr_A 12 LEAYGISDVHDIVYNPS-YDL---LYQEELDPSLTGYERGVLTN-LGAVA-VDTGIFTGRSPKDKYIVRDDTTRDTFWWA 85 (540)
T ss_dssp HHHTTCCCCCCEEESCC-HHH---HHHHHHCTTCCGGGCEEECT-TSCEE-ECCCSCSSCCGGGEEEECSTTTTTTSCCT
T ss_pred hhhcCCCCCCeEEeCCC-HHH---HHHHHHhcCCCccccceecC-CCCEE-EcCCCcccCCCCceEEeCCCCCccccccc
Confidence 35678999999999998 554 999999988 4566743 57655 677889999999999998877652111 0
Q ss_pred CCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhcc-ccCHHHHHhc
Q psy13078 113 KPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMT-RIGTPVLNLL 191 (325)
Q Consensus 113 ~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imt-R~g~~v~d~l 191 (325)
..| |+.-.||..+++.-++|.+++.+.|+||+|||+|+.+| .++++.....++||++|+.|.++.|. |...+.++..
T Consensus 86 ~~~-~~~~~N~~~~~e~f~~l~~~~~~~l~~k~lyv~d~~~G-~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~~ 163 (540)
T 2olr_A 86 DKG-KGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCG-ANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGF 163 (540)
T ss_dssp TSS-SSCCSCEEECHHHHHHHHHHHHHHHTTSCEEEEEEEES-SSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTC
T ss_pred ccc-ccccccCCCCHHHHHHHHHHHHHHHcCCCEEEEeeeee-CChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcCC
Confidence 111 12124888888999999999999999999999999999 89999999999999999999999999 9988777654
Q ss_pred CCCCCceeeeeccCCCCCCCCCCCCCCCC---CCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchh
Q psy13078 192 DADQPFVKALHSVGTPVSGKHEFPEWPCD---PERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWL 268 (325)
Q Consensus 192 ~~~~~Fvr~vHSvG~pl~~~~~~~~Wpcn---~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWL 268 (325)
. .+|+-- ...-+ ....|.++ ++ ++|+++++++++++.|+.|+|+ -||. .||++..++.++|||
T Consensus 164 ~--pd~~i~-~~~~~------~~p~f~~~G~~s~-~~v~~~~~~~~~~I~Gt~Y~Ge---mKK~-~ftl~n~~l~~~G~L 229 (540)
T 2olr_A 164 K--PDFIVM-NGAKC------TNPQWKEQGLNSE-NFVAFNLTERMQLIGGTWYGGE---MKKG-MFSMMNYLLPLKGIA 229 (540)
T ss_dssp C--CSEEEE-EETTC------CCTTTTTTTCSSS-CEEEEETTTTEEEEESCCCTHH---HHHH-HHHHHHHHTGGGTCE
T ss_pred C--CCEEEE-EeccC------CCCCcccCCccCc-cEEEEEccCCeEEEeCCcCchH---hhhh-HHHHhHHHHHHCCcE
Confidence 2 256321 11000 01346655 54 7999999999999999999999 3655 999999999999999
Q ss_pred HHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccc
Q psy13078 269 AEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 269 AEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDI 319 (325)
++||.+. .+++|+..+|.| +||||||+|+|. | += .+||||+
T Consensus 230 ~mH~san--vg~~g~~~lffG--lSGtGKTTLs~d-~---~r--~lIgDDe 270 (540)
T 2olr_A 230 SMHCSAN--VGEKGDVAVFFG--LSGTGKTTLSTD-P---KR--RLIGDDE 270 (540)
T ss_dssp EECEEEE--ECTTSCEEEEEC--STTSSHHHHHCC-T---TS--EEEESSC
T ss_pred eecceee--eCCCCCEEEEEc--cCCCCHHHHhcC-c---CC--cEEecCc
Confidence 9999984 478899999986 999999999986 2 22 7999997
No 6
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=99.95 E-value=1.9e-27 Score=240.17 Aligned_cols=237 Identities=14% Similarity=0.120 Sum_probs=188.3
Q ss_pred HHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHh---cC-cccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCC
Q psy13078 37 IDNCVELCQPSDVHICDGSEREYKELIDLMVK---DK-TLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDT 112 (325)
Q Consensus 37 V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~---~G-~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~ 112 (325)
-.+...+|.|++||++.+++|. ++++++ .| ++-+|.. .|..+ .....+++|...++||+.++..+.
T Consensus 6 ~~~~~g~~~~~~i~~n~~~~~L----~e~a~~~~~~~~~eg~l~~-~Gal~-~~tg~~tgRsp~dk~iv~~~~~~~---- 75 (532)
T 1ytm_A 6 SLAKYGITGATNIVHNPSHEEL----FAAETQASLEGFEKGTVTE-MGAVN-VMTGVYTGRSPKDKFIVKNEASKE---- 75 (532)
T ss_dssp HHHHHTCCCCSEEEESCCHHHH----HHHHTCTTCCGGGCEEECT-TSSEE-ECCTTCCSBCGGGEEEECSGGGTT----
T ss_pred chHhcCCCCCCeEEECCCHHHH----HHHHHhhccCCcccceecC-CCCEE-EcCCCcccCCCCceEEeCCCCccc----
Confidence 3456789999999999988875 566777 66 4556643 56655 577789999999999998877554
Q ss_pred CCCccCCCccc----------cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhhhcc-
Q psy13078 113 KPGVKGTLGNW----------ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMT- 181 (325)
Q Consensus 113 ~~Gv~~~l~nw----------m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~imt- 181 (325)
.+| ..+++.-++|.+++.+.|+||+|||+|+.+| .++++.....++||++|+.+.++.|.
T Consensus 76 --------i~w~~~~~~~~n~~~~~e~f~~l~~~~~~~l~~k~l~v~d~~~G-~d~~~~~~vr~it~~a~~~lf~~nLf~ 146 (532)
T 1ytm_A 76 --------IWWTSDEFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFCG-ANENTRLKIRFVMEVAWQAHFVTNMFI 146 (532)
T ss_dssp --------SCCCCSSSCCSCEEECHHHHHHHHHHHHHHHSSSEEEEEEEEES-SCTTTCEEEEEEESCHHHHHHHHHHSB
T ss_pred --------ccccccccCcccCCCCHHHHHHHHHHHHHHHcCCCEEEEEEEee-CChhhceeEEEEeCHHHHHHHHHHhcc
Confidence 144 4456666778888999999999999999999 79999999999999999999999999
Q ss_pred ccCHHHHHhcCC-------CCCceeeeeccCCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhH
Q psy13078 182 RIGTPVLNLLDA-------DQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFA 254 (325)
Q Consensus 182 R~g~~v~d~l~~-------~~~Fvr~vHSvG~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfA 254 (325)
|...+.++.... ..+|....|+.|. + .+++|++++++++++..|+.|+|+ -||. .
T Consensus 147 rp~~ee~~~f~pd~~i~~~p~~f~~~~~~~G~-------------~-s~~~v~~n~~~~~~~I~gt~Y~Ge---mKK~-~ 208 (532)
T 1ytm_A 147 RPTEEELKGFEPDFVVLNASKAKVENFKELGL-------------N-SETAVVFNLAEKMQIILNTWYGGE---MKKG-M 208 (532)
T ss_dssp CCCHHHHTTCCCSEEEEEETTCCCTTTTTTTC-------------S-SSCEEEEETTTTEEEEESCCCTTH---HHHH-H
T ss_pred CCChHHhccCCCCEEEEECCccccCCcccCCC-------------C-CceEEEEECCCCEEEEeCCccCch---hhHh-H
Confidence 998776653311 1113333344442 1 257999999999999999999998 3655 9
Q ss_pred HHHHhhhhhhcchhHHhhhhhceeCCCC-ceEEEEeecCCccChhhhcccCCCCCCceEEEeccccc
Q psy13078 255 LRIGSTIAKREGWLAEHMLILGITNPEG-QKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 255 LRiaS~~Ar~EGWLAEHMlIlgit~P~G-~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA 320 (325)
||++..++.++|||++||.+ .| +++| +..+|.| +||||||.|+|. | + -.+||||+-
T Consensus 209 ftl~n~~~~~~G~L~~H~sa-nv-~~~g~~~~~ffG--lSGtGKTTLs~d-~---~--r~lIgDDe~ 265 (532)
T 1ytm_A 209 FSMMNFYLPLQGIAAMHCSA-NT-DLEGKNTAIFFG--LSGTGKTTLSTD-P---K--RLLIGDDEH 265 (532)
T ss_dssp HHHHHHHTGGGTCEEEEEEE-EE-ETTSCSEEEEEC--CTTSSHHHHHCC-T---T--EEEEESSEE
T ss_pred HHHHHHHHHHCCcEeecCee-ee-CCCCCeEEEEEe--cCCCCHHHHhhC-c---C--CCEEECCee
Confidence 99999999999999999998 66 6778 7778876 999999999986 2 2 279999973
No 7
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=99.94 E-value=5.7e-27 Score=236.35 Aligned_cols=234 Identities=17% Similarity=0.092 Sum_probs=190.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCccCCCccccC
Q psy13078 46 PSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWIS 125 (325)
Q Consensus 46 P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~~~l~nwm~ 125 (325)
|++||++.+++|.+ +++++.|+-..|.. .|..+ .....+++|...++||+.++..+.-.. .--.||..
T Consensus 1 ~~~v~~n~~~~eL~----e~A~~~~eg~~lt~-~Gal~-~~tg~~tgRsp~dk~iv~~~~~~~~i~------w~~~n~~~ 68 (524)
T 1ii2_A 1 PPTIHRNLLSPELV----QWALKIEKDSRLTA-RGALA-VMSYAKTGRSPLDKRIVDTDDVRENVD------WGKVNMKL 68 (524)
T ss_dssp CCEEEESCCHHHHH----HHHHHHCTTCEECT-TSCEE-ECCTTCSSBCGGGEEEECCHHHHTTSC------BTTTBCEE
T ss_pred CCeeEeCCCHHHHH----HHHHHhCCCcEEcC-CCCEE-EecCcccCCCcCceEEeCCCCCccccc------cCcCcccC
Confidence 88999999888755 66788887767754 56655 577789999999999998776552211 11127788
Q ss_pred HHHHHHHHHhcCccccCCCe-EEEEecccCCCCCCCCcceeeccCchhHHhhhhhc-cccCHHHHHhcCCCC-------C
Q psy13078 126 PQDYEEAIMQRFPGCMKGRT-MYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIM-TRIGTPVLNLLDADQ-------P 196 (325)
Q Consensus 126 ~~~~~~~l~~~f~G~M~GRt-MyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~im-tR~g~~v~d~l~~~~-------~ 196 (325)
+++.-++|.+++.+.|+||+ |||+|+.+| .++++.....++|+++|+.+.|+.| .|...+.++..+... +
T Consensus 69 ~~e~f~~l~~~~~~~l~~k~~l~v~d~~~G-~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~ 147 (524)
T 1ii2_A 69 SEESFARVRKIAKEFLDTREHLFVVDCFAG-HDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGE 147 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEEEEEEEEEC-SSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHcCCCcEEEEeeeee-cChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCC
Confidence 88888889999999999997 999999999 7999999999999999999999999 699988777765443 4
Q ss_pred ceeeeeccCCCCCCCCCCCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhc
Q psy13078 197 FVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILG 276 (325)
Q Consensus 197 Fvr~vHSvG~pl~~~~~~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlg 276 (325)
|....|+.|. +. +++|+++++++.++..|+.|+|+ -||. .||++..++.++|||++||.+.
T Consensus 148 f~~~~~~~G~-------------~s-~~~v~~~~~~~~~~I~Gt~Y~Ge---mKK~-~ftl~n~~~~~~g~L~~H~san- 208 (524)
T 1ii2_A 148 CKADPSIPGL-------------TS-TTCVALNFKTREQVILGTEYAGE---MKKG-ILTVMFELMPQMNHLCMHASAN- 208 (524)
T ss_dssp SCCCTTSTTC-------------CS-SCEEEEETTTTEEEEESCCCTHH---HHHH-HHHHHHHHHHHTTCEEESEEEE-
T ss_pred ccCCcccCCc-------------Cc-ccEEEEECCCCeEEEECCcchHH---HHHH-HHHHHHHHHHHCCcEeecceee-
Confidence 5555555553 22 57999999999999999999998 3665 9999999999999999999964
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA 320 (325)
.+++|+..+|.| +||||||+|+|- |+= .+||||+-
T Consensus 209 -~g~~g~~~~ffG--lSGtGKTTLs~d----~~r--~lIgDDe~ 243 (524)
T 1ii2_A 209 -VGKQGDVTVFFG--LSGTGKTTLSAD----PHR--NLIGDDEH 243 (524)
T ss_dssp -ECTTCCEEEEEC--CTTSSHHHHHCC----TTS--EEEESSCE
T ss_pred -eCCCCCEEEEEc--cCCcchhhhhhc----cCC--eEEecchh
Confidence 367899999986 999999999984 332 48999973
No 8
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.15 E-value=0.15 Score=43.08 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=28.3
Q ss_pred CCCCceEEEEeecCCccChhhhcccCC-C--CCCceE-EEeccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKV-ECVGVPYK 320 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~p-~--~pGwkv-~~VGDDIA 320 (325)
.+.|+..++. -|||||||++|-+.- . .+|+.+ .+-||++-
T Consensus 22 ~~~g~~i~l~--G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 22 DQKGCVIWVT--GLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp TSCCEEEEEE--CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCCeEEEEE--CCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 4678888888 899999999975321 1 368753 55678774
No 9
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.23 E-value=0.078 Score=48.92 Aligned_cols=48 Identities=29% Similarity=0.336 Sum_probs=27.1
Q ss_pred EeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 237 SYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 237 S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++..-||+..++. .|+++..-++..||-.+| ..+. .|+|||||+||-+
T Consensus 23 ~l~~~~g~~~~~~----~l~~~i~~~~~~~~~~~~-------------~ll~--Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 23 SLDEFIGQENVKK----KLSLALEAAKMRGEVLDH-------------VLLA--GPPGLGKTTLAHI 70 (334)
T ss_dssp SGGGCCSCHHHHH----HHHHHHHHHHHHTCCCCC-------------EEEE--SSTTSSHHHHHHH
T ss_pred cHHHccCcHHHHH----HHHHHHHHHHhcCCCCCe-------------EEEE--CCCCCcHHHHHHH
Confidence 3445567766532 344444444444443233 3333 6899999999865
No 10
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.42 E-value=0.26 Score=41.59 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=26.0
Q ss_pred eCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEeccccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA 320 (325)
+.+.|+.+.++ -|||||||+||-+.--.-|+ +.+=|||+.
T Consensus 25 ~~~~g~~i~l~--G~~GsGKSTl~~~L~~~~g~-~~i~~d~~~ 64 (200)
T 4eun_A 25 TGEPTRHVVVM--GVSGSGKTTIAHGVADETGL-EFAEADAFH 64 (200)
T ss_dssp ---CCCEEEEE--CCTTSCHHHHHHHHHHHHCC-EEEEGGGGS
T ss_pred cCCCCcEEEEE--CCCCCCHHHHHHHHHHhhCC-eEEcccccc
Confidence 45668888777 89999999997543222266 455678763
No 11
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.52 E-value=0.36 Score=40.91 Aligned_cols=38 Identities=26% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCCceEEEEeecCCccChhhhcccC-CCC--CCceEEEecccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN-PTL--PGYKVECVGVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~-p~~--pGwkv~~VGDDI 319 (325)
+.|+. ++-.-|||||||+|+-+. ..+ .|.+|..++-|.
T Consensus 20 ~~~~~--i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLV--LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEE--EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeE--EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 34544 555579999999987532 211 377787776553
No 12
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.18 E-value=0.46 Score=39.96 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=17.1
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+...+. -|||||||++|-.
T Consensus 23 ~~~~~i~l~--G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 23 NAMVRIFLT--GYMGAGKTTLGKA 44 (199)
T ss_dssp -CCCEEEEE--CCTTSCHHHHHHH
T ss_pred CCCCEEEEE--cCCCCCHHHHHHH
Confidence 457777777 7999999999864
No 13
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.06 E-value=0.48 Score=40.26 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=15.4
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++|+. ++-.-|||||||+|+=
T Consensus 20 ~~g~~--v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQL--VALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCEE--EEEECCTTSCTHHHHH
T ss_pred CCCeE--EEEECCCCCCHHHHHH
Confidence 44655 4455899999999973
No 14
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=83.35 E-value=0.53 Score=39.94 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=16.1
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++|+.+-+. -|||||||+|+-
T Consensus 18 ~~Gei~~l~--GpnGsGKSTLl~ 38 (207)
T 1znw_A 18 AVGRVVVLS--GPSAVGKSTVVR 38 (207)
T ss_dssp -CCCEEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 458776666 899999999864
No 15
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=83.33 E-value=0.43 Score=39.23 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=18.6
Q ss_pred CCCCceEEEEeecCCccChhhhccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
-++|+..++. -|+|||||.||..
T Consensus 35 ~~~g~~~~l~--G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 35 PEEGKGLTFV--GSPGVGKTHLAVA 57 (180)
T ss_dssp GGGCCEEEEC--CSSSSSHHHHHHH
T ss_pred ccCCCEEEEE--CCCCCCHHHHHHH
Confidence 3458888888 6999999999853
No 16
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.72 E-value=0.52 Score=40.82 Aligned_cols=24 Identities=25% Similarity=0.077 Sum_probs=16.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-|. .|||||||+|+=
T Consensus 18 l~i~~G~~~~lv--GpsGsGKSTLl~ 41 (218)
T 1z6g_A 18 GSMNNIYPLVIC--GPSGVGKGTLIK 41 (218)
T ss_dssp ----CCCCEEEE--CSTTSSHHHHHH
T ss_pred eecCCCCEEEEE--CCCCCCHHHHHH
Confidence 334668877777 799999999864
No 17
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=82.44 E-value=1 Score=42.48 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=29.7
Q ss_pred hhhhhceeCCCCceEEEEeecCCccChhhhcccC----CCC-CCceEEEecccc
Q psy13078 271 HMLILGITNPEGQKKYIAAAFPSACGKTNLAMLN----PTL-PGYKVECVGVPY 319 (325)
Q Consensus 271 HMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~-pGwkv~~VGDDI 319 (325)
-+.+++-. ..++...|+-+.|||||||+||-+. ... .+=+|.+|+-|.
T Consensus 80 ~~~~l~~~-~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 80 TYQFLGKP-EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHTCC-CCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HHHHhccC-CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 34455543 2456678889999999999997422 111 233567776553
No 18
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.79 E-value=0.47 Score=40.76 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=13.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
++-+.|+.+-++ -|||||||+|+
T Consensus 22 l~v~~G~ii~l~--Gp~GsGKSTl~ 44 (231)
T 3lnc_A 22 MLKSVGVILVLS--SPSGCGKTTVA 44 (231)
T ss_dssp CCEECCCEEEEE--CSCC----CHH
T ss_pred cccCCCCEEEEE--CCCCCCHHHHH
Confidence 444568777776 89999999986
No 19
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.95 E-value=0.46 Score=39.73 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=16.6
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+-+. -|||||||+|+.+
T Consensus 23 ~~G~~~~l~--G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVF--GEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEE--ESTTSSHHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 347666555 8999999999853
No 20
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.67 E-value=0.8 Score=42.15 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.5
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
++...|+-+.|||||||+||-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 455678888999999999985
No 21
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.40 E-value=0.79 Score=38.09 Aligned_cols=35 Identities=37% Similarity=0.397 Sum_probs=23.7
Q ss_pred CCCceEEEEeecCCccChhhhcccCCCCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VG 316 (325)
|.|+.+-++ -|+|||||.||+..--.+|.+|-.+.
T Consensus 18 ~~G~~~~i~--G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVY--GPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEE--CSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred cCCEEEEEE--CCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 458776666 79999999998743113456665554
No 22
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.15 E-value=0.7 Score=39.12 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---C-CCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---T-LPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~-~pGwkv~~VG 316 (325)
|.|+.+-+. -|||||||+|+.+.- . .+|.++..+.
T Consensus 28 ~~G~~~~l~--GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 28 PEGTTVLLT--GGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcEEEEE--eCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 458877776 799999999976321 1 2455555544
No 23
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=78.83 E-value=1.2 Score=41.37 Aligned_cols=53 Identities=25% Similarity=0.203 Sum_probs=30.5
Q ss_pred hcchhHHhhhhhce-----eCCCCceEEEEeecCCccChhhhcccC----CCCCC-ceEEEeccc
Q psy13078 264 REGWLAEHMLILGI-----TNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPG-YKVECVGVP 318 (325)
Q Consensus 264 ~EGWLAEHMlIlgi-----t~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pG-wkv~~VGDD 318 (325)
..+...++-..+|+ +.++|+ .++-+.|||||||+|+=+. ++.+| -+|..|..|
T Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~g~--ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 67 RQRLFAATAEFLGEPQQNPDRPVPF--IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp HHHHHHHHHHHTTCCCCCSSSCCCE--EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred hhHHHHHHHHhhcccccccCCCCCE--EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 33444455556665 123354 5556699999999998422 22344 356666544
No 24
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=78.81 E-value=0.79 Score=43.02 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=21.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++=|.|+.+-|. -|||||||+|+++.
T Consensus 121 l~i~~Ge~vaIv--GpsGsGKSTLl~lL 146 (305)
T 2v9p_A 121 KGIPKKNCLAFI--GPPNTGKSMLCNSL 146 (305)
T ss_dssp HTCTTCSEEEEE--CSSSSSHHHHHHHH
T ss_pred EEecCCCEEEEE--CCCCCcHHHHHHHH
Confidence 455789988888 89999999998763
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.80 E-value=0.79 Score=39.70 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=18.6
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++++-|.| ..+. -|+|||||.||-.
T Consensus 44 ~~~~~~~g--~ll~--G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 44 MGARIPKG--VLLV--GPPGVGKTHLARA 68 (254)
T ss_dssp TTCCCCSE--EEEE--CCTTSSHHHHHHH
T ss_pred cCCCCCCe--EEEE--CCCCCCHHHHHHH
Confidence 45666777 5555 8999999999753
No 26
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=78.53 E-value=0.47 Score=35.25 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.9
Q ss_pred CCCCcEEeccCCCcccccccceEEEcCCCCC
Q psy13078 77 KYENCWLARTNPADVARVESKTFICTQEKAE 107 (325)
Q Consensus 77 ~~~n~~l~rsdp~DvARve~rTfI~t~~~~d 107 (325)
|-+|..+||.+|+=+|-..++||+++-..+.
T Consensus 14 k~dg~vihF~nPkVqaS~~aNTfvv~G~~e~ 44 (58)
T 3mcb_B 14 TNQGTVIHFNNPKVQASLAANTFTITGHAET 44 (58)
T ss_dssp ETTSEEEEEESCEEEEETTTTEEEEESCEEE
T ss_pred ecCCEEEEecCcceEEeeccceEEEecCCee
Confidence 4578999999999999999999999876544
No 27
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=78.34 E-value=1 Score=39.93 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=27.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
++=+.|+.+-+. -|||||||+|.= +.++..| +|.+=|.|+.
T Consensus 26 l~i~~Ge~~~ii--G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~ 70 (235)
T 3tif_A 26 LNIKEGEFVSIM--GPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTN 70 (235)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECT
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHhcCCCCCce-EEEECCEEcc
Confidence 444678888787 699999999852 2344445 3666666553
No 28
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.17 E-value=0.82 Score=38.58 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.4
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+-++ -|||||||.||+
T Consensus 22 ~~G~~~~i~--G~~GsGKTtl~~ 42 (243)
T 1n0w_A 22 ETGSITEMF--GEFRTGKTQICH 42 (243)
T ss_dssp ETTSEEEEE--CCTTSSHHHHHH
T ss_pred cCCeEEEEE--CCCCCcHHHHHH
Confidence 458877777 699999999986
No 29
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=78.03 E-value=1.1 Score=39.67 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=16.9
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.|+...|. -|||||||+++-+
T Consensus 25 ~~g~~I~I~--G~~GsGKSTl~k~ 46 (252)
T 4e22_A 25 AIAPVITVD--GPSGAGKGTLCKA 46 (252)
T ss_dssp TTSCEEEEE--CCTTSSHHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 457766666 7999999999754
No 30
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=77.90 E-value=0.86 Score=37.79 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=24.3
Q ss_pred CCceEEEEeecCCccChhhhcccCCC---CCCceEEEeccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGVP 318 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~VGDD 318 (325)
.|+.+-++ -|+|||||.|+...-- ..|.+|-.++-+
T Consensus 22 ~G~~~~i~--G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 22 QGFFIALT--GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TTCEEEEE--CSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCCEEEEE--cCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 57776665 8999999999764321 136677776644
No 31
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=77.84 E-value=1 Score=37.03 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCceEEEEeecCCccChhhhcccCCC---CCCceEEEe
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECV 315 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~V 315 (325)
.|+..++. .|+|||||.|+-+.-- -.|.++-.+
T Consensus 35 ~g~~~~l~--G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 35 HGQFIYVW--GEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSEEEEE--SSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEE--CCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 57888887 8999999999764310 147655544
No 32
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=77.83 E-value=0.97 Score=37.90 Aligned_cols=28 Identities=29% Similarity=0.134 Sum_probs=18.8
Q ss_pred CCceEEEEeecCCccChhhhcccC-CCCCCc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN-PTLPGY 310 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~-p~~pGw 310 (325)
.|+...|+ .|||||||++|-+. -.++|+
T Consensus 20 ~~~~i~i~--G~~GsGKSTl~~~L~~~~~~~ 48 (207)
T 2qt1_A 20 KTFIIGIS--GVTNSGKTTLAKNLQKHLPNC 48 (207)
T ss_dssp CCEEEEEE--ESTTSSHHHHHHHHHTTSTTE
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHHhcCCc
Confidence 35555555 89999999998543 334455
No 33
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.81 E-value=0.83 Score=41.24 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=26.0
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcccCCCC--CCceEEEeccccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAMLNPTL--PGYKVECVGVPYK 320 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~--pGwkv~~VGDDIA 320 (325)
++++-|.| +.--.|+|||||.||-..-.. ++ .+.+-|.|+.
T Consensus 39 ~~l~~~~G----vlL~Gp~GtGKTtLakala~~~~~~-~i~i~g~~l~ 81 (274)
T 2x8a_A 39 LGLVTPAG----VLLAGPPGCGKTLLAKAVANESGLN-FISVKGPELL 81 (274)
T ss_dssp TTCCCCSE----EEEESSTTSCHHHHHHHHHHHTTCE-EEEEETTTTC
T ss_pred cCCCCCCe----EEEECCCCCcHHHHHHHHHHHcCCC-EEEEEcHHHH
Confidence 46777888 444489999999997543111 12 4555566653
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=77.27 E-value=1.1 Score=39.66 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=19.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-+. .|||||||+|.-
T Consensus 26 l~i~~Ge~~~i~--G~nGsGKSTLl~ 49 (237)
T 2cbz_A 26 FSIPEGALVAVV--GQVGCGKSSLLS 49 (237)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHH
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHH
Confidence 444678888887 899999999864
No 35
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=75.90 E-value=0.77 Score=42.50 Aligned_cols=40 Identities=18% Similarity=-0.139 Sum_probs=28.0
Q ss_pred CCCCceEEEEeecCCccChhhhcccC-CC--CCCceEEEeccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN-PT--LPGYKVECVGVPYK 320 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~-p~--~pGwkv~~VGDDIA 320 (325)
-++|+.+-+. -|+|||||+|+-.. -- -.|.+|.+.|-|+-
T Consensus 97 ~~~g~vi~lv--G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 97 FRKPAVIMIV--GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SSSCEEEEEE--CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCcEEEEE--cCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 3457776666 59999999986422 11 14789999998874
No 36
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=75.58 E-value=1.3 Score=38.67 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=15.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++-++|.. |+-.-|||||||+|+=+
T Consensus 20 l~i~~g~i--igI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 20 FQSMRPFL--IGVSGGTASGKSTVCEK 44 (245)
T ss_dssp ---CCSEE--EEEECSTTSSHHHHHHH
T ss_pred ccCCCCEE--EEEECCCCCCHHHHHHH
Confidence 34455644 44458999999999753
No 37
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=75.25 E-value=0.64 Score=35.35 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.8
Q ss_pred CCCCcEEeccCCCcccccccceEEEcCCCCC
Q psy13078 77 KYENCWLARTNPADVARVESKTFICTQEKAE 107 (325)
Q Consensus 77 ~~~n~~l~rsdp~DvARve~rTfI~t~~~~d 107 (325)
|-+|..+||.+|+=+|-..++||+++-..+.
T Consensus 14 k~dg~vihF~nPkVqaS~~aNT~vv~G~~e~ 44 (66)
T 3lkx_A 14 TNQGTVIHFNNPKVQASLAANTFTITGHAET 44 (66)
T ss_dssp ETTSEEEEEESCEEEEECC-CEEEEESCEEE
T ss_pred ecCCEEEEecCcceEEeeccCeeEecCCCEE
Confidence 4578999999999999999999999876544
No 38
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.55 E-value=1.4 Score=39.10 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=26.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|.=+ .++..| +|.+=|-|+
T Consensus 23 l~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 66 (243)
T 1mv5_A 23 FEAQPNSIIAFA--GPSGGGKSTIFSLLERFYQPTAG-EITIDGQPI 66 (243)
T ss_dssp EEECTTEEEEEE--CCTTSSHHHHHHHHTTSSCCSBS-CEEETTEES
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEh
Confidence 444678887777 8999999998542 233445 466656555
No 39
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=74.51 E-value=1.2 Score=39.75 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=25.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|.-+ .++..| +|.+=|-|+
T Consensus 30 l~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~p~~G-~I~i~g~~~ 73 (247)
T 2ff7_A 30 LSIKQGEVIGIV--GRSGSGKSTLTKLIQRFYIPENG-QVLIDGHDL 73 (247)
T ss_dssp EEEETTCEEEEE--CSTTSSHHHHHHHHTTSSCCSEE-EEEETTEET
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEh
Confidence 444578888777 8999999998632 233334 455555454
No 40
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=74.25 E-value=1.2 Score=39.19 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=25.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.- +.++..| +|.+-|-|+
T Consensus 25 l~i~~Ge~~~ii--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 68 (224)
T 2pcj_A 25 LSVKKGEFVSII--GASGSGKSTLLYILGLLDAPTEG-KVFLEGKEV 68 (224)
T ss_dssp EEEETTCEEEEE--ECTTSCHHHHHHHHTTSSCCSEE-EEEETTEEC
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEEC
Confidence 334568887777 799999999853 2243344 355555554
No 41
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=74.09 E-value=1.1 Score=37.70 Aligned_cols=35 Identities=20% Similarity=0.059 Sum_probs=23.3
Q ss_pred CCCceEEEEeecCCccChhhhcccC--C-CCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN--P-TLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~--p-~~pGwkv~~VG 316 (325)
|.|+.+-++ -|+|+|||.||+-. - ...|.+|-.++
T Consensus 21 ~~G~~~~i~--G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 21 PERNVVLLS--GGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp ETTCEEEEE--ECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEE--CCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457777666 78999999997622 0 11466666654
No 42
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=73.91 E-value=1.5 Score=39.39 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=25.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|.=+. ++ .| +|.+=|-|+
T Consensus 41 l~i~~Ge~~~i~--G~nGsGKSTLl~~l~Gl~~~-~G-~I~i~g~~i 83 (260)
T 2ghi_A 41 FFIPSGTTCALV--GHTGSGKSTIAKLLYRFYDA-EG-DIKIGGKNV 83 (260)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHHHHTTSSCC-EE-EEEETTEEG
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhccCCC-Ce-EEEECCEEh
Confidence 444678888777 89999999986322 22 23 455555554
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=73.79 E-value=1.3 Score=38.96 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=18.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-+. -|||||||+|.-
T Consensus 29 l~i~~Ge~~~i~--G~nGsGKSTLl~ 52 (229)
T 2pze_A 29 FKIERGQLLAVA--GSTGAGKTSLLM 52 (229)
T ss_dssp EEEETTCEEEEE--CCTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 344678888777 899999999853
No 44
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=73.73 E-value=1.2 Score=40.21 Aligned_cols=47 Identities=19% Similarity=0.103 Sum_probs=31.1
Q ss_pred chhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEeccccc
Q psy13078 266 GWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 266 GWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA 320 (325)
+++..|-..+-+ .|+..-|+ -|||+|||.||.-.- --|+ ++|.||-.
T Consensus 21 ~~~~lHa~~v~~---~g~~ilI~--GpsGsGKStLA~~La-~~g~--~iIsdDs~ 67 (205)
T 2qmh_A 21 ERRSMHGVLVDI---YGLGVLIT--GDSGVGKSETALELV-QRGH--RLIADDRV 67 (205)
T ss_dssp CCCCEESEEEEE---TTEEEEEE--CCCTTTTHHHHHHHH-TTTC--EEEESSEE
T ss_pred cceeeeEEEEEE---CCEEEEEE--CCCCCCHHHHHHHHH-HhCC--eEEecchh
Confidence 345556655533 45555555 799999999987432 2366 99999953
No 45
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=73.69 E-value=1.6 Score=39.40 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=26.2
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|.= +.++..| +|.+-|-|+
T Consensus 27 l~i~~Ge~~~li--G~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~ 70 (262)
T 1b0u_A 27 LQARAGDVISII--GSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNI 70 (262)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEC
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEc
Confidence 444678888777 799999999853 2233334 355556555
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=73.61 E-value=1.5 Score=36.40 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.4
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.++..++. .|+|||||.||..
T Consensus 50 ~~~~~~ll~--G~~G~GKT~la~~ 71 (242)
T 3bos_A 50 DGVQAIYLW--GPVKSGRTHLIHA 71 (242)
T ss_dssp CSCSEEEEE--CSTTSSHHHHHHH
T ss_pred CCCCeEEEE--CCCCCCHHHHHHH
Confidence 346677777 7999999999864
No 47
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.95 E-value=0.82 Score=42.42 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=26.3
Q ss_pred CCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+|+..-+. -|||||||+|+-.. ++ .|-+|.++|-|+.
T Consensus 101 ~g~vi~lv--G~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVV--GVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEE--CSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCS
T ss_pred CCeEEEEE--CCCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCC
Confidence 35555555 69999999986432 21 4779999998874
No 48
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.62 E-value=1.5 Score=38.82 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=18.3
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++++-|.| ..+. -|+|||||.||-.
T Consensus 68 ~~~~~~~g--vll~--Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 68 MGARIPKG--VLLV--GPPGVGKTHLARA 92 (278)
T ss_dssp TTCCCCCE--EEEE--CCTTSSHHHHHHH
T ss_pred cCCCCCCe--EEEE--CCCcChHHHHHHH
Confidence 45666777 5555 8999999999753
No 49
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=72.42 E-value=1.8 Score=39.34 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=26.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|.-+ .++..| +|.+=|-|+
T Consensus 40 l~i~~Ge~~~i~--G~nGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i 83 (271)
T 2ixe_A 40 FTLYPGKVTALV--GPNGSGKSTVAALLQNLYQPTGG-KVLLDGEPL 83 (271)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEG
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEc
Confidence 445678888777 8999999998642 233345 466556555
No 50
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.01 E-value=1.5 Score=38.78 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=25.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|.-+ .++..| +|.+=|-|+
T Consensus 27 l~i~~Ge~~~l~--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 70 (240)
T 1ji0_A 27 LKVPRGQIVTLI--GANGAGKTTTLSAIAGLVRAQKG-KIIFNGQDI 70 (240)
T ss_dssp EEEETTCEEEEE--CSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEC
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEC
Confidence 344568887777 8999999998632 233334 455555554
No 51
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=71.84 E-value=1.7 Score=36.49 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.9
Q ss_pred eCCCCceEEEEeecCCccChhhhc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+=+.|+...+. -|+|||||+|.
T Consensus 29 ~i~~Ge~v~L~--G~nGaGKTTLl 50 (158)
T 1htw_A 29 HTEKAIMVYLN--GDLGAGKTTLT 50 (158)
T ss_dssp CCSSCEEEEEE--CSTTSSHHHHH
T ss_pred ccCCCCEEEEE--CCCCCCHHHHH
Confidence 34678887777 79999999975
No 52
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=71.78 E-value=1.8 Score=39.25 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=26.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.=+ .++..| +|.+=|-|+
T Consensus 45 l~i~~Gei~~li--G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i 88 (263)
T 2olj_A 45 VHIREGEVVVVI--GPSGSGKSTFLRCLNLLEDFDEG-EIIIDGINL 88 (263)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHHHTTSSCCSEE-EEEETTEES
T ss_pred EEEcCCCEEEEE--cCCCCcHHHHHHHHHcCCCCCCc-EEEECCEEC
Confidence 444678888787 7999999998632 233333 455555555
No 53
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=71.62 E-value=1.5 Score=37.95 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=15.7
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+|...|.| ..+. .|+|||||.||-
T Consensus 40 ~~~~~~~~--vll~--G~~GtGKT~la~ 63 (257)
T 1lv7_A 40 LGGKIPKG--VLMV--GPPGTGKTLLAK 63 (257)
T ss_dssp ---CCCCE--EEEE--CCTTSCHHHHHH
T ss_pred cCCCCCCe--EEEE--CcCCCCHHHHHH
Confidence 34455555 5555 799999999974
No 54
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.38 E-value=2 Score=37.78 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=15.3
Q ss_pred CCceEEEEeecCCccChhhhcc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.|+...+. -|||||||+|+-
T Consensus 18 ~g~~ivl~--GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLI--GASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEE--CCTTSSHHHHHH
T ss_pred CCCEEEEE--CcCCCCHHHHHH
Confidence 46665555 899999999853
No 55
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=71.38 E-value=1.9 Score=38.94 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=++|+.+-+. -|||||||+|.=
T Consensus 41 l~i~~Ge~~~l~--G~NGsGKSTLlk 64 (267)
T 2zu0_C 41 LDVHPGEVHAIM--GPNGSGKSTLSA 64 (267)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 444678887777 799999999864
No 56
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=71.27 E-value=1.4 Score=39.01 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.1
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+-|+ -|+|||||.||+.
T Consensus 28 ~~G~i~~i~--G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 28 VAGTVGALV--SPGGAGKSMLALQ 49 (279)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHH
T ss_pred cCCCEEEEE--cCCCCCHHHHHHH
Confidence 468887777 7999999999863
No 57
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=71.20 E-value=1.9 Score=41.23 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=25.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.- +.++..| +|.+=|-|+
T Consensus 24 l~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i 67 (359)
T 2yyz_A 24 FEVKDGEFVALL--GPSGCGKTTTLLMLAGIYKPTSG-EIYFDDVLV 67 (359)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEC
T ss_pred EEEcCCCEEEEE--cCCCchHHHHHHHHHCCCCCCcc-EEEECCEEC
Confidence 444678877777 899999999853 2333344 355545454
No 58
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=70.74 E-value=1.7 Score=38.73 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=18.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-+. .|||||||+|.-
T Consensus 24 l~i~~Ge~~~l~--G~nGsGKSTLlk 47 (250)
T 2d2e_A 24 LVVPKGEVHALM--GPNGAGKSTLGK 47 (250)
T ss_dssp EEEETTCEEEEE--CSTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 334568887777 799999999864
No 59
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=70.48 E-value=2 Score=41.13 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=25.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.= +.++..| +|.+=|-|+
T Consensus 24 l~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i 67 (362)
T 2it1_A 24 LKIKDGEFMALL--GPSGSGKSTLLYTIAGIYKPTSG-KIYFDEKDV 67 (362)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHHHHTSSCCSEE-EEEETTEEC
T ss_pred EEECCCCEEEEE--CCCCchHHHHHHHHhcCCCCCce-EEEECCEEC
Confidence 444678877776 899999999853 2233334 355555554
No 60
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=70.34 E-value=1.7 Score=36.59 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.0
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+-|+ .|+|+|||.||+
T Consensus 28 ~~G~l~~i~--G~pG~GKT~l~l 48 (251)
T 2zts_A 28 PEGTTVLLT--GGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCeEEEEE--eCCCCCHHHHHH
Confidence 457777776 689999999987
No 61
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.95 E-value=1.8 Score=42.49 Aligned_cols=43 Identities=30% Similarity=0.375 Sum_probs=28.7
Q ss_pred HHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 254 ALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 254 ALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.||=+...--+.- |...=+|+..|.|--.| .|+|||||.||-.
T Consensus 159 ~l~e~v~~Pl~~p---e~f~~~gi~~prGvLL~----GPPGTGKTllAkA 201 (405)
T 4b4t_J 159 EIKEVIELPVKHP---ELFESLGIAQPKGVILY----GPPGTGKTLLARA 201 (405)
T ss_dssp HHHHHTHHHHHCH---HHHHHHTCCCCCCEEEE----SCSSSSHHHHHHH
T ss_pred HHHHHHHHHHhCH---HHHHhCCCCCCCceEEe----CCCCCCHHHHHHH
Confidence 5666665543322 22233588899996655 8999999999854
No 62
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=69.92 E-value=2.8 Score=36.15 Aligned_cols=34 Identities=12% Similarity=-0.051 Sum_probs=23.6
Q ss_pred EEEEeecCCccChhhhcccCCCCCCceEEEecccc
Q psy13078 285 KYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDI 319 (325)
.+|+-..|+|||||+|+-+.--. |-+|.+.+-++
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~~~~~ 54 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICLLTEPV 54 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEEECCTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEEEecCH
Confidence 46666799999999987544333 44677777654
No 63
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.71 E-value=1.8 Score=36.95 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=16.6
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+|+..|.| .++. .|+|||||.||-.
T Consensus 34 ~g~~~~~~--vll~--G~~GtGKT~la~~ 58 (262)
T 2qz4_A 34 LGAKVPKG--ALLL--GPPGCGKTLLAKA 58 (262)
T ss_dssp --CCCCCE--EEEE--SCTTSSHHHHHHH
T ss_pred cCCCCCce--EEEE--CCCCCCHHHHHHH
Confidence 35555533 5566 7999999999853
No 64
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=69.66 E-value=1.9 Score=38.29 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=26.3
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVP 318 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDD 318 (325)
+.|+.+-|+ -|+|||||+|++.. ++-.|++|-.++-+
T Consensus 33 ~~G~~~~i~--G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVT--SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEE--ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCeEEEEE--eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 458776666 79999999998743 22348888777644
No 65
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.64 E-value=2.4 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=14.1
Q ss_pred EEEEeecCCccChhhhccc
Q psy13078 285 KYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl 303 (325)
.-|.-+.|||||||++|-.
T Consensus 34 ~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp EEEEEECCTTSCTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3444458999999999863
No 66
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=69.63 E-value=2.1 Score=41.08 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=25.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.-+ .++..| +|.+=|-|+
T Consensus 32 l~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i 75 (372)
T 1v43_A 32 LTIKDGEFLVLL--GPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDV 75 (372)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHHHHTSSCCSEE-EEEETTEEC
T ss_pred EEECCCCEEEEE--CCCCChHHHHHHHHHcCCCCCce-EEEECCEEC
Confidence 444678877777 8999999998632 233334 355545454
No 67
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=69.62 E-value=1.2 Score=41.52 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=28.3
Q ss_pred eCCCCceEEEEeecCCccChhhhcccCC-C--CCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~p-~--~pGwkv~~VGDDI 319 (325)
+...|+..-|++ |+|+|||+|+...- . ..|.||-+++-|+
T Consensus 101 ~~~~~~vI~ivG--~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 101 KENRLNIFMLVG--VNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CTTSCEEEEEES--STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCCCCeEEEEEC--CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345577777775 79999998764221 1 1599999998887
No 68
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=69.31 E-value=2.3 Score=38.34 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=25.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|.=+ .++..| +|.+-|-|+
T Consensus 28 l~i~~Ge~~~li--G~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~ 71 (266)
T 2yz2_A 28 LVINEGECLLVA--GNTGSGKSTLLQIVAGLIEPTSG-DVLYDGERK 71 (266)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEC
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCCc-EEEECCEEC
Confidence 444678888787 7999999998632 233334 355545444
No 69
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=68.94 E-value=1.9 Score=41.20 Aligned_cols=40 Identities=28% Similarity=0.239 Sum_probs=25.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.- +.++..| +|.+=|.|+
T Consensus 36 l~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i 79 (355)
T 1z47_A 36 FQIREGEMVGLL--GPSGSGKTTILRLIAGLERPTKG-DVWIGGKRV 79 (355)
T ss_dssp EEEETTCEEEEE--CSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEC
T ss_pred EEECCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCcc-EEEECCEEC
Confidence 334568877777 899999999863 2343344 355555555
No 70
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=68.88 E-value=2 Score=38.47 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=26.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|.-+ .++..| +|.+=|-|+
T Consensus 28 l~i~~Ge~~~li--G~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~ 71 (257)
T 1g6h_A 28 ISVNKGDVTLII--GPNGSGKSTLINVITGFLKADEG-RVYFENKDI 71 (257)
T ss_dssp CEEETTCEEEEE--CSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEC
T ss_pred EEEeCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEC
Confidence 334568887777 7999999998642 233344 455555555
No 71
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.70 E-value=2.4 Score=38.31 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=25.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. .|||||||+|.-+ .++..| +|.+-|-|+
T Consensus 36 l~i~~Gei~~l~--G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~ 79 (256)
T 1vpl_A 36 FEIEEGEIFGLI--GPNGAGKTTTLRIISTLIKPSSG-IVTVFGKNV 79 (256)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHHHTTSSCCSEE-EEEETTEET
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEEC
Confidence 444678887777 7999999998542 233334 355545444
No 72
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=68.57 E-value=2.1 Score=41.14 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=26.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+..-+. -|||||||+|.- +.++..| +|.+=|.||
T Consensus 25 l~i~~Ge~~~ll--GpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~i 68 (359)
T 3fvq_A 25 LSLDPGEILFII--GASGCGKTTLLRCLAGFEQPDSG-EISLSGKTI 68 (359)
T ss_dssp EEECTTCEEEEE--ESTTSSHHHHHHHHHTSSCCSEE-EEEETTEEE
T ss_pred EEEcCCCEEEEE--CCCCchHHHHHHHHhcCCCCCCc-EEEECCEEC
Confidence 444678877666 799999999853 3344445 466666665
No 73
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=68.47 E-value=1.8 Score=41.22 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=25.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.- +.++..| +|.+=|-|+
T Consensus 21 l~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i 64 (348)
T 3d31_A 21 LKVESGEYFVIL--GPTGAGKTLFLELIAGFHVPDSG-RILLDGKDV 64 (348)
T ss_dssp EEECTTCEEEEE--CCCTHHHHHHHHHHHTSSCCSEE-EEEETTEEC
T ss_pred EEEcCCCEEEEE--CCCCccHHHHHHHHHcCCCCCCc-EEEECCEEC
Confidence 344678877676 899999999863 2344445 355555454
No 74
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=68.05 E-value=2.3 Score=38.76 Aligned_cols=18 Identities=33% Similarity=0.218 Sum_probs=14.0
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
..++-.-|||||||+|+-
T Consensus 81 ~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 345556899999999874
No 75
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=67.77 E-value=2.3 Score=39.18 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=19.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-+. .|||||||+|.-
T Consensus 59 l~i~~Ge~~~i~--G~NGsGKSTLlk 82 (290)
T 2bbs_A 59 FKIERGQLLAVA--GSTGAGKTSLLM 82 (290)
T ss_dssp EEECTTCEEEEE--ESTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHH
Confidence 444679988888 799999999853
No 76
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=67.75 E-value=2.2 Score=37.29 Aligned_cols=25 Identities=36% Similarity=0.398 Sum_probs=18.0
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
|+..| +-.++. .|+|||||.||-..
T Consensus 47 ~~~~~--~~~ll~--G~~GtGKT~la~~l 71 (285)
T 3h4m_A 47 GIEPP--KGILLY--GPPGTGKTLLAKAV 71 (285)
T ss_dssp CCCCC--SEEEEE--SSSSSSHHHHHHHH
T ss_pred CCCCC--CeEEEE--CCCCCcHHHHHHHH
Confidence 44444 446666 89999999998754
No 77
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=67.69 E-value=2.1 Score=41.00 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=25.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.- +.++..| +|.+=|.|+
T Consensus 24 l~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~ 67 (372)
T 1g29_1 24 LEVKDGEFMILL--GPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLV 67 (372)
T ss_dssp EEEETTCEEEEE--CSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEE
T ss_pred EEEcCCCEEEEE--CCCCcHHHHHHHHHHcCCCCCcc-EEEECCEEC
Confidence 344568877676 899999999863 2343344 355545444
No 78
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=67.63 E-value=1.7 Score=41.28 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=25.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.= +.++..| +|.+=|-|+
T Consensus 26 l~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i 69 (353)
T 1oxx_K 26 INIENGERFGIL--GPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLV 69 (353)
T ss_dssp EEECTTCEEEEE--CSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEE
T ss_pred EEECCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 444678877777 899999999853 2343344 355545444
No 79
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=67.44 E-value=2 Score=37.85 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=18.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=++|+.+-+. .|||||||+|.=
T Consensus 30 l~i~~Ge~~~ii--G~NGsGKSTLlk 53 (214)
T 1sgw_A 30 MTIEKGNVVNFH--GPNGIGKTTLLK 53 (214)
T ss_dssp EEEETTCCEEEE--CCTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 333568887777 899999999864
No 80
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.39 E-value=1.8 Score=42.46 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=20.2
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+|+.-|.|--.| .|+|||||.||-.
T Consensus 201 ~g~~~prGiLL~----GPPGtGKT~lakA 225 (428)
T 4b4t_K 201 IGIDPPRGVLLY----GPPGTGKTMLVKA 225 (428)
T ss_dssp HCCCCCCEEEEE----SCTTTTHHHHHHH
T ss_pred CCCCCCceEEEE----CCCCCCHHHHHHH
Confidence 588889885554 8999999999864
No 81
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=67.31 E-value=2.2 Score=39.03 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=26.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
++=+.|+.+-+. -|||||||+|.-+ .++..| +|.+-|-|+.
T Consensus 42 l~i~~Ge~~~li--G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~ 86 (279)
T 2ihy_A 42 WQIAKGDKWILY--GLNGAGKTTLLNILNAYEPATSG-TVNLFGKMPG 86 (279)
T ss_dssp EEEETTCEEEEE--CCTTSSHHHHHHHHTTSSCCSEE-EEEETTBCCC
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCCe-EEEECCEEcc
Confidence 333568887777 7999999998642 233345 4666665553
No 82
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.31 E-value=1.9 Score=42.51 Aligned_cols=25 Identities=44% Similarity=0.640 Sum_probs=20.4
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+|+.-|.|--.| .|+|||||.||-.
T Consensus 210 ~g~~~prGvLLy----GPPGTGKTllAkA 234 (434)
T 4b4t_M 210 MGIRAPKGALMY----GPPGTGKTLLARA 234 (434)
T ss_dssp HCCCCCCEEEEE----SCTTSSHHHHHHH
T ss_pred CCCCCCCeeEEE----CcCCCCHHHHHHH
Confidence 588889886655 8999999999864
No 83
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=67.24 E-value=2.6 Score=33.14 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=14.4
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
++-..+. .|+|||||.||.
T Consensus 43 ~~~~ll~--G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLI--GEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEE--CCTTSCHHHHHH
T ss_pred CCceEEE--CCCCCCHHHHHH
Confidence 3445555 899999999974
No 84
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=67.20 E-value=2.7 Score=36.90 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=18.3
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++.+|..-...+.-..|+|||||.||-
T Consensus 39 ~~~~~~~~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 39 GLKDPNRPIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp TCSCTTSCSEEEEEESCSSSSHHHHHH
T ss_pred CCCCCCCCceEEEEECCCCcCHHHHHH
Confidence 456665333344445899999999985
No 85
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=66.46 E-value=2.5 Score=36.88 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=24.8
Q ss_pred CceEEEEeecCCccChhhhcccCCCCCCce--------E-EEecccccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNPTLPGYK--------V-ECVGVPYKG 321 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p~~pGwk--------v-~~VGDDIA~ 321 (325)
++..-|+-..|+|||||++|-..-..-|+. | .+=.||+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 344556667899999999986443323554 2 344677754
No 86
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=66.36 E-value=1.6 Score=41.10 Aligned_cols=37 Identities=14% Similarity=-0.001 Sum_probs=26.4
Q ss_pred CCCceEEEEeecCCccChhhhccc-----CCCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML-----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl-----~p~~pGwkv~~VGDDIA 320 (325)
+.|+.+-+. -|||||||+|+-. .| .|.+|.++|-|+-
T Consensus 127 ~~g~vi~lv--G~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFV--GFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEE--CCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCS
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHHHHHHHh--cCCEEEEEeeccc
Confidence 446555555 7899999998432 23 4779999999873
No 87
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=66.25 E-value=2.4 Score=38.14 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=25.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. .|||||||+|.-+ .++. | +|.+-|-|+
T Consensus 21 l~i~~Ge~~~li--G~NGsGKSTLlk~l~Gl~~p~-G-~i~~~g~~~ 63 (249)
T 2qi9_C 21 GEVRAGEILHLV--GPNGAGKSTLLARMAGMTSGK-G-SIQFAGQPL 63 (249)
T ss_dssp EEEETTCEEEEE--CCTTSSHHHHHHHHTTSSCCE-E-EEEETTEEG
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHhCCCCCC-e-EEEECCEEC
Confidence 334568887777 8999999998632 2333 5 466656554
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=66.24 E-value=2.6 Score=37.97 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=26.2
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-|+ -|||||||+|.-+. ++...=+|.+.||+|.
T Consensus 23 ~~g~~v~i~--Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 23 RKMGLILVT--GPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 65 (261)
T ss_dssp CSSEEEEEE--CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred CCCCEEEEE--CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence 457665555 89999999985321 2221347889999875
No 89
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=66.10 E-value=2.4 Score=33.56 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=14.2
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
.+-.++. .|+|||||.||-
T Consensus 43 ~~~vll~--G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILL--GDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEE--SCGGGCHHHHHH
T ss_pred CCceEEE--CCCCCCHHHHHH
Confidence 3445555 899999999974
No 90
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.86 E-value=2.1 Score=42.23 Aligned_cols=43 Identities=33% Similarity=0.372 Sum_probs=27.4
Q ss_pred HHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 254 ALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 254 ALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.||-+....-+.- |-..=+|+.-|.|--.| .|+|||||.||-.
T Consensus 192 ~l~e~v~~pl~~p---~~f~~~g~~~prGvLL~----GPPGtGKTllAkA 234 (437)
T 4b4t_L 192 ELREVIELPLKNP---EIFQRVGIKPPKGVLLY----GPPGTGKTLLAKA 234 (437)
T ss_dssp HHHHHHHHHHHCH---HHHHHHCCCCCCEEEEE----SCTTSSHHHHHHH
T ss_pred HHHHHHHHHHhCH---HHHHhCCCCCCCeEEEE----CCCCCcHHHHHHH
Confidence 4665555432222 12223478888886555 8999999999854
No 91
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=65.78 E-value=3 Score=36.68 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=18.7
Q ss_pred hceeCCC-CceEEEEeecCCccChhhhcc
Q psy13078 275 LGITNPE-GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~P~-G~~~yiaaAFPSaCGKTnlAM 302 (325)
.|+..+. +.-.++. .|+|||||.||-
T Consensus 59 ~g~~~~~~~~~vll~--G~~GtGKT~la~ 85 (309)
T 3syl_A 59 LGLAHETPTLHMSFT--GNPGTGKTTVAL 85 (309)
T ss_dssp HTCCSSCCCCEEEEE--ECTTSSHHHHHH
T ss_pred cCCCCCCCCceEEEE--CCCCCCHHHHHH
Confidence 4566544 4446666 699999999984
No 92
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=65.70 E-value=2.5 Score=37.98 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=18.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+-+. .|||||||+|.-
T Consensus 26 l~i~~Ge~~~l~--G~nGsGKSTLl~ 49 (253)
T 2nq2_C 26 FDLNKGDILAVL--GQNGCGKSTLLD 49 (253)
T ss_dssp EEEETTCEEEEE--CCSSSSHHHHHH
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHH
Confidence 333568887777 899999999864
No 93
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=65.13 E-value=2.7 Score=40.67 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=26.4
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC-CCC-CCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN-PTL-PGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~-p~~-pGwkv~~VGDDIA 320 (325)
++=++|+..-+. -|||||||+|.-+. ..+ ..=+|.+=|.||.
T Consensus 42 l~i~~Ge~~~ll--GpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 42 FSISPGQRVGLL--GRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWD 85 (390)
T ss_dssp EEECTTCEEEEE--ESTTSSHHHHHHHHHTCSEEEEEEEESSCBTT
T ss_pred EEEcCCCEEEEE--CCCCChHHHHHHHHhCCCCCCeEEEECCEECC
Confidence 445678887777 79999999986432 111 2224555566654
No 94
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=65.08 E-value=2.9 Score=40.54 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=27.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
++=++|+.+-+. -|||||||+|.- +.++..|- |.+=|.|+.
T Consensus 24 l~i~~Ge~~~ll--GpsGsGKSTLLr~iaGl~~p~~G~-I~i~G~~~~ 68 (381)
T 3rlf_A 24 LDIHEGEFVVFV--GPSGCGKSTLLRMIAGLETITSGD-LFIGEKRMN 68 (381)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECT
T ss_pred EEECCCCEEEEE--cCCCchHHHHHHHHHcCCCCCCeE-EEECCEECC
Confidence 444678877666 899999999853 33444453 666565654
No 95
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=64.95 E-value=2.9 Score=36.45 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=16.8
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+.+-+. -|||||||+|.-
T Consensus 20 ~~Ge~~~li--G~nGsGKSTLl~ 40 (208)
T 3b85_A 20 DTNTIVFGL--GPAGSGKTYLAM 40 (208)
T ss_dssp HHCSEEEEE--CCTTSSTTHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 458877676 899999999864
No 96
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=64.71 E-value=2.5 Score=38.67 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=27.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
++=++|+.+-+. -|||||||+|.= +.++..| +|.+=|-||
T Consensus 29 l~i~~Ge~~~ii--GpnGsGKSTLl~~l~Gl~~p~~G-~I~~~G~~i 72 (275)
T 3gfo_A 29 MNIKRGEVTAIL--GGNGVGKSTLFQNFNGILKPSSG-RILFDNKPI 72 (275)
T ss_dssp EEEETTSEEEEE--CCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEC
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHHcCCCCCCe-EEEECCEEC
Confidence 444578887777 799999999863 2344445 466666666
No 97
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=64.57 E-value=1.5 Score=37.96 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=17.6
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+++..|.| ..+. .|+|||||.||-
T Consensus 39 ~~~~~~~~--vll~--G~~GtGKT~la~ 62 (268)
T 2r62_A 39 LGAKIPKG--VLLV--GPPGTGKTLLAK 62 (268)
T ss_dssp HSCCCCSC--CCCB--CSSCSSHHHHHH
T ss_pred CCCCCCce--EEEE--CCCCCcHHHHHH
Confidence 45666666 3444 799999999984
No 98
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=63.97 E-value=1.8 Score=35.23 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=12.1
Q ss_pred eEEEEeecCCccChhhhc
Q psy13078 284 KKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlA 301 (325)
..-|+ -|+|||||||.
T Consensus 28 ~~~i~--G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIV--GANGSGKSNIG 43 (182)
T ss_dssp EEEEE--ECTTSSHHHHH
T ss_pred cEEEE--CCCCCCHHHHH
Confidence 44455 69999999983
No 99
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=63.94 E-value=3.2 Score=35.05 Aligned_cols=39 Identities=26% Similarity=0.218 Sum_probs=24.5
Q ss_pred CCCCceEEEEeecCCccChhhhcccC-CCC---CCceEEEe-cccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN-PTL---PGYKVECV-GVPY 319 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~-p~~---pGwkv~~V-GDDI 319 (325)
.+.|....+. -|+|||||++|-+. ..+ .|.++.++ ||++
T Consensus 22 ~~~~~~i~~~--G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLT--GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEE--CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEE--CCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3457666666 78999999998643 222 36555555 3544
No 100
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=63.75 E-value=2.3 Score=39.63 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=27.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+.+-|. -|||||||+|+-+. ++..| +|.+=|-||.
T Consensus 75 l~i~~Ge~vaiv--G~sGsGKSTLl~ll~gl~~p~~G-~I~i~G~~i~ 119 (306)
T 3nh6_A 75 FTVMPGQTLALV--GPSGAGKSTILRLLFRFYDISSG-CIRIDGQDIS 119 (306)
T ss_dssp EEECTTCEEEEE--SSSCHHHHHHHHHHTTSSCCSEE-EEEETTEETT
T ss_pred EEEcCCCEEEEE--CCCCchHHHHHHHHHcCCCCCCc-EEEECCEEcc
Confidence 445679988888 79999999997542 33334 3555565554
No 101
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=62.91 E-value=2.8 Score=37.94 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=27.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
++=++|+.+-+. -|||||||+|.- +.++..| +|.+=|.|+.
T Consensus 32 l~i~~Ge~~~li--G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~ 76 (266)
T 4g1u_C 32 LHIASGEMVAII--GPNGAGKSTLLRLLTGYLSPSHG-ECHLLGQNLN 76 (266)
T ss_dssp EEEETTCEEEEE--CCTTSCHHHHHHHHTSSSCCSSC-EEEETTEETT
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECC
Confidence 334568887777 799999999863 3344455 4666666654
No 102
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=62.68 E-value=3 Score=38.30 Aligned_cols=37 Identities=11% Similarity=-0.000 Sum_probs=27.1
Q ss_pred CCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
.|+..-++| |+|+|||+|+-.. ..-.|.||-.++-|.
T Consensus 104 ~g~vi~lvG--~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFG--STGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEE--STTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 466666664 7899999876532 223599999999886
No 103
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=62.46 E-value=3.2 Score=37.47 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=20.2
Q ss_pred CCceEEEEeecCCccChhhhcccCCCCCCc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNPTLPGY 310 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p~~pGw 310 (325)
.|+...++ -|||||||+++-+..-.-||
T Consensus 47 ~g~~i~l~--G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 47 NGRSMYLV--GMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TTCCEEEE--CSTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEE--CCCCCCHHHHHHHHHHhcCC
Confidence 36777777 79999999997654333355
No 104
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=62.44 E-value=3.3 Score=39.62 Aligned_cols=40 Identities=18% Similarity=-0.139 Sum_probs=27.8
Q ss_pred CCCCceEEEEeecCCccChhhhcccC-CC--CCCceEEEeccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN-PT--LPGYKVECVGVPYK 320 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~-p~--~pGwkv~~VGDDIA 320 (325)
-+.|+.+-+. -|+|||||+|+-.. -- ..|.+|..+|-|+.
T Consensus 154 ~~~g~vi~lv--G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIV--GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEE--CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCeEEEEE--cCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 3457766666 59999999986422 11 14789999998874
No 105
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.42 E-value=3.3 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=17.2
Q ss_pred CCCCceEEEEeecCCccChhhhcc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+..++..+|. .|+|||||.||-
T Consensus 42 ~~~~~~vli~--G~~G~GKTtl~~ 63 (386)
T 2qby_A 42 EEKPNNIFIY--GLTGTGKTAVVK 63 (386)
T ss_dssp TCCCCCEEEE--ECTTSSHHHHHH
T ss_pred CCCCCeEEEE--CCCCCCHHHHHH
Confidence 4456667777 799999999975
No 106
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=62.34 E-value=3.7 Score=36.89 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=16.1
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.-.++. .|+|||||.||-.
T Consensus 37 ~~~lll~--G~~GtGKT~la~~ 56 (324)
T 1l8q_A 37 YNPIFIY--GSVGTGKTHLLQA 56 (324)
T ss_dssp CSSEEEE--CSSSSSHHHHHHH
T ss_pred CCeEEEE--CCCCCcHHHHHHH
Confidence 4567777 7999999999854
No 107
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=62.16 E-value=1.9 Score=39.51 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=27.7
Q ss_pred CCceEEEEeecCCccChhhhcccCCC---CCCceEEEeccccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGVPYK 320 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~VGDDIA 320 (325)
.|+..-++ -|+|||||+++....- ..|.+|..++-|+-
T Consensus 97 ~~~~i~i~--g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLV--GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEE--CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 46666666 5999999998763321 25899999998864
No 108
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=61.92 E-value=3.6 Score=37.30 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=18.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+ |+.+-+. -|||||||+|.=
T Consensus 26 l~i~-Ge~~~i~--G~NGsGKSTLlk 48 (263)
T 2pjz_A 26 LEVN-GEKVIIL--GPNGSGKTTLLR 48 (263)
T ss_dssp EEEC-SSEEEEE--CCTTSSHHHHHH
T ss_pred EEEC-CEEEEEE--CCCCCCHHHHHH
Confidence 4446 8888777 899999999863
No 109
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=61.86 E-value=2.7 Score=40.63 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=17.5
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+-|+ -|||||||.|++
T Consensus 176 ~~Gei~~I~--G~sGsGKTTLl~ 196 (400)
T 3lda_A 176 ETGSITELF--GEFRTGKSQLCH 196 (400)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--cCCCCChHHHHH
Confidence 358777777 799999999987
No 110
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=61.70 E-value=3.6 Score=38.27 Aligned_cols=37 Identities=14% Similarity=-0.040 Sum_probs=25.4
Q ss_pred CCceEEEEeecCCccChhhhcccCCC---CCCceEEEecccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNPT---LPGYKVECVGVPY 319 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~VGDDI 319 (325)
.|+..-++| |+|||||+|+-..-- ..|.||..++-|+
T Consensus 103 ~~~vi~ivG--~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 103 PPFVIMVVG--VNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SCEEEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCeEEEEEc--CCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 455566664 799999987652211 1488999998775
No 111
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=61.05 E-value=3.4 Score=36.25 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=21.6
Q ss_pred CceEEEEeecCCccChhhhcccC-CCCC-CceEEEecccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLN-PTLP-GYKVECVGVPY 319 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~-p~~p-Gwkv~~VGDDI 319 (325)
+....++ -|||||||++|-.. ..++ ++ +..-||++
T Consensus 32 ~~~i~l~--G~~GsGKSTla~~L~~~l~~~~-~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLG--GQSGAGKTTIHRIKQKEFQGNI-VIIDGDSF 68 (253)
T ss_dssp CEEEEEE--SCGGGTTHHHHHHHHHHTTTCC-EEECGGGG
T ss_pred CeEEEEE--CCCCCCHHHHHHHHHHhcCCCc-EEEecHHH
Confidence 4445555 79999999998642 2222 33 45566765
No 112
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=60.98 E-value=3.8 Score=40.84 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=28.1
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+..-+. -|||||||+|.-+. ++..| +|..=|-||.
T Consensus 362 l~i~~G~~~~iv--G~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~~~ 406 (578)
T 4a82_A 362 LSIEKGETVAFV--GMSGGGKSTLINLIPRFYDVTSG-QILIDGHNIK 406 (578)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHTTTTTSSCCSEE-EEEETTEEGG
T ss_pred EEECCCCEEEEE--CCCCChHHHHHHHHhcCCCCCCc-EEEECCEEhh
Confidence 445779998888 69999999997543 23334 4555565554
No 113
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.91 E-value=3 Score=39.56 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---CCCCceEEEe
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECV 315 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~V 315 (325)
|.|+.+-|+| |+|||||.||+-.- ...|.+|-.|
T Consensus 61 ~~G~ii~I~G--~pGsGKTtLal~la~~~~~~g~~vlyi 97 (356)
T 1u94_A 61 PMGRIVEIYG--PESSGKTTLTLQVIAAAQREGKTCAFI 97 (356)
T ss_dssp ETTSEEEEEC--STTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCeEEEEEC--CCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4588877774 99999999987321 1245555544
No 114
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=60.73 E-value=4.2 Score=36.61 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=15.6
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++-..+. .|+|||||.||-.
T Consensus 49 ~~~vLL~--Gp~GtGKT~la~a 68 (301)
T 3cf0_A 49 SKGVLFY--GPPGCGKTLLAKA 68 (301)
T ss_dssp CSEEEEE--CSSSSSHHHHHHH
T ss_pred CceEEEE--CCCCcCHHHHHHH
Confidence 4556666 7999999999854
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=60.30 E-value=3.7 Score=33.05 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.0
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
.++. .|+|||||.||-
T Consensus 41 ~ll~--G~~G~GKT~l~~ 56 (226)
T 2chg_A 41 LLFS--GPPGTGKTATAI 56 (226)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 5555 799999999975
No 116
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=60.30 E-value=3.6 Score=38.28 Aligned_cols=21 Identities=19% Similarity=-0.070 Sum_probs=17.5
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+-|+ -|+|||||.||+
T Consensus 120 ~~G~i~~I~--G~~GsGKTtla~ 140 (343)
T 1v5w_A 120 ESMAITEAF--GEFRTGKTQLSH 140 (343)
T ss_dssp CSSEEEEEE--CCTTCTHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 568777776 799999999987
No 117
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=59.87 E-value=3.8 Score=40.83 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=27.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+.+-+. .|||||||+|+-+. ++..| +|..=|-||.
T Consensus 364 ~~i~~G~~~~iv--G~sGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~ 408 (582)
T 3b60_A 364 LKIPAGKTVALV--GRSGSGKSTIASLITRFYDIDEG-HILMDGHDLR 408 (582)
T ss_dssp EEECTTCEEEEE--ECTTSSHHHHHHHHTTTTCCSEE-EEEETTEETT
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhhccCCCCC-eEEECCEEcc
Confidence 455779988888 79999999987532 33344 4555555553
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=59.83 E-value=3.5 Score=36.83 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=17.0
Q ss_pred CCCCceEEEEeecCCccChhhhcc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+..+.-.+|. .|+|||||.||-
T Consensus 41 ~~~~~~vll~--G~~G~GKT~l~~ 62 (387)
T 2v1u_A 41 GEKPSNALLY--GLTGTGKTAVAR 62 (387)
T ss_dssp SCCCCCEEEC--BCTTSSHHHHHH
T ss_pred CCCCCcEEEE--CCCCCCHHHHHH
Confidence 3445667777 899999999975
No 119
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=59.69 E-value=4.1 Score=37.33 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=22.4
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---CCCCceEEEe
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECV 315 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~V 315 (325)
+.|+.+-|+ -|+|+|||.||+-.- ...|.+|=.+
T Consensus 66 ~~G~l~li~--G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 66 KRRNFVLIA--ARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCcEEEEE--eCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 458777777 689999999987321 1245555444
No 120
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=59.68 E-value=4.6 Score=33.37 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.4
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
+-.++. .|+|+|||.||..
T Consensus 55 ~~~~l~--G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLH--GSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEE--CSTTSSHHHHHHH
T ss_pred CeEEEE--CCCCCCHHHHHHH
Confidence 567777 6999999999753
No 121
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=59.27 E-value=4.3 Score=39.14 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=28.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
++=++|+.+-+. -|||||||+|.- |.++..| +|.+=|.||.
T Consensus 49 l~i~~Gei~~Ii--GpnGaGKSTLlr~i~GL~~p~~G-~I~i~G~~i~ 93 (366)
T 3tui_C 49 LHVPAGQIYGVI--GASGAGKSTLIRCVNLLERPTEG-SVLVDGQELT 93 (366)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECS
T ss_pred EEEcCCCEEEEE--cCCCchHHHHHHHHhcCCCCCce-EEEECCEECC
Confidence 444678887777 799999999843 3344455 5777777765
No 122
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=58.98 E-value=4.2 Score=40.59 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=27.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=|.|+.+-+. -|||||||+|.-+. ++..| +|.+=|-||.
T Consensus 365 l~i~~G~~~~iv--G~sGsGKSTLl~~l~g~~~p~~G-~i~~~g~~i~ 409 (595)
T 2yl4_A 365 LSIPSGSVTALV--GPSGSGKSTVLSLLLRLYDPASG-TISLDGHDIR 409 (595)
T ss_dssp EEECTTCEEEEE--CCTTSSSTHHHHHHTTSSCCSEE-EEEETTEETT
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCcCCCCc-EEEECCEEhh
Confidence 455779988777 89999999987532 33334 4555555553
No 123
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=58.82 E-value=4.2 Score=40.52 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=27.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPY 319 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDI 319 (325)
++=+.|+.+-+. -|||||||+|+-+. ++..| +|..=|-||
T Consensus 364 l~i~~G~~~~iv--G~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~~ 407 (582)
T 3b5x_A 364 FSIPQGKTVALV--GRSGSGKSTIANLFTRFYDVDSG-SICLDGHDV 407 (582)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEh
Confidence 455679888888 79999999986532 44445 455555555
No 124
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=58.15 E-value=5.2 Score=32.80 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=16.1
Q ss_pred eCCCCceEEEEeecCCccChhhhcc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+-+.|.+.-+. -|++||||+|.-
T Consensus 22 ~~~~~~~v~lv--G~~g~GKSTLl~ 44 (210)
T 1pui_A 22 PSDTGIEVAFA--GRSNAGKSSALN 44 (210)
T ss_dssp SCSCSEEEEEE--ECTTSSHHHHHT
T ss_pred CCCCCcEEEEE--CCCCCCHHHHHH
Confidence 34556555555 699999999853
No 125
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.87 E-value=2.9 Score=41.94 Aligned_cols=26 Identities=42% Similarity=0.517 Sum_probs=20.8
Q ss_pred hhceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 274 ILGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 274 Ilgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
=+|+.-|.|--.| .|+|||||.||-.
T Consensus 237 ~~Gi~pprGILLy----GPPGTGKTlLAkA 262 (467)
T 4b4t_H 237 TLGIDPPKGILLY----GPPGTGKTLCARA 262 (467)
T ss_dssp HHTCCCCSEEEEC----SCTTSSHHHHHHH
T ss_pred HCCCCCCCceEee----CCCCCcHHHHHHH
Confidence 3588899885555 8999999999854
No 126
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=57.79 E-value=2.7 Score=37.00 Aligned_cols=20 Identities=30% Similarity=0.228 Sum_probs=15.4
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++-..+. .|+|||||.||-.
T Consensus 54 ~~~vll~--Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLF--GPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEE--SSSSSCHHHHHHH
T ss_pred CCeEEEE--CcCCCCHHHHHHH
Confidence 4556666 8999999999853
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=57.64 E-value=4.2 Score=35.19 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=13.8
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
++.+.+. .|+|||||+|+=
T Consensus 27 ~~~i~l~--G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVIL--GPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEE--CCTTSSHHHHHH
T ss_pred CcEEEEE--CCCCCCHHHHHH
Confidence 3444444 899999999873
No 128
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=57.49 E-value=3 Score=39.11 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=18.4
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+-|. -|+|||||.|++.
T Consensus 129 ~~G~i~~I~--G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 129 ETQAITEVF--GEFGSGKTQLAHT 150 (349)
T ss_dssp ESSEEEEEE--ESTTSSHHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHHH
Confidence 568888887 6999999999874
No 129
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.08 E-value=3.4 Score=40.58 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=18.5
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+=+. -|||||||+|+.+
T Consensus 37 ~~Ge~~~l~--G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 37 PIGRSTLVS--GTSGTGKTLFSIQ 58 (525)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHH
T ss_pred CCCeEEEEE--cCCCCCHHHHHHH
Confidence 568877777 7999999999886
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=56.88 E-value=3.3 Score=41.86 Aligned_cols=40 Identities=13% Similarity=-0.093 Sum_probs=27.0
Q ss_pred eCCCCceEEEEeecCCccChhhhcccCC-C--CCCceEEEecccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGVPY 319 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl~p-~--~pGwkv~~VGDDI 319 (325)
+-+.|+.+-|. .|||||||+|+-+.- . ..|.+|.++|-|+
T Consensus 289 ~i~~GeVI~LV--GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 289 EGKAPFVILMV--GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CSCTTEEEEEE--CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred eccCCeEEEEE--CCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 34457666666 789999999864321 1 1478899987665
No 131
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=56.58 E-value=3.9 Score=37.47 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=17.4
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+-|+ -|+|||||.||+
T Consensus 105 ~~G~i~~i~--G~~GsGKT~la~ 125 (324)
T 2z43_A 105 ETRTMTEFF--GEFGSGKTQLCH 125 (324)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHhHHHH
Confidence 458877777 789999999987
No 132
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.45 E-value=3.8 Score=40.80 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=20.1
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+|+.-|.|--.| -|+|||||.||-.
T Consensus 211 ~Gi~~prGvLLy----GPPGTGKTlLAkA 235 (437)
T 4b4t_I 211 MGIKPPKGVILY----GAPGTGKTLLAKA 235 (437)
T ss_dssp HTCCCCSEEEEE----SSTTTTHHHHHHH
T ss_pred CCCCCCCCCceE----CCCCchHHHHHHH
Confidence 578888885555 8999999999854
No 133
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=55.87 E-value=5.4 Score=35.93 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=22.1
Q ss_pred CceEEEEeecCCccChhhhcccCCCCCCceEEEecccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPY 319 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDI 319 (325)
++...|+-..|+|||||++|=+.-. -|+.+ +-.|++
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg~~~-id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LGAYI-IDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HTCEE-EEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCcE-EehhHH
Confidence 3455666778999999999843222 36643 223444
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=55.46 E-value=5 Score=36.01 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=16.1
Q ss_pred CCCc--eEEEEeecCCccChhhhcc
Q psy13078 280 PEGQ--KKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~--~~yiaaAFPSaCGKTnlAM 302 (325)
..+. ..+|. .|+|||||.||-
T Consensus 40 ~~~~~~~~li~--G~~G~GKTtl~~ 62 (389)
T 1fnn_A 40 PGHHYPRATLL--GRPGTGKTVTLR 62 (389)
T ss_dssp TTSSCCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCCCeEEEE--CCCCCCHHHHHH
Confidence 3445 67776 899999999974
No 135
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=55.19 E-value=5.3 Score=40.02 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=28.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|+..-+. -|||||||+|+-+. ++..| +|..=|-||.
T Consensus 364 l~i~~Ge~~~iv--G~sGsGKSTll~~l~g~~~~~~G-~i~i~g~~i~ 408 (587)
T 3qf4_A 364 FSVKPGSLVAVL--GETGSGKSTLMNLIPRLIDPERG-RVEVDELDVR 408 (587)
T ss_dssp EEECTTCEEEEE--CSSSSSHHHHHHTTTTSSCCSEE-EEEESSSBGG
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCccCCCc-EEEECCEEcc
Confidence 445779988888 79999999997654 22233 4565565554
No 136
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=54.93 E-value=4.1 Score=36.91 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=17.1
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+-|+ -|++||||.||+
T Consensus 96 ~~g~i~~i~--G~~gsGKT~la~ 116 (322)
T 2i1q_A 96 ESQSVTEFA--GVFGSGKTQIMH 116 (322)
T ss_dssp ETTEEEEEE--ESTTSSHHHHHH
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 457777776 689999999986
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=54.88 E-value=3.3 Score=33.57 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=13.3
Q ss_pred eEEEEeecCCccChhhhcc
Q psy13078 284 KKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAM 302 (325)
...|. .|+|||||.||-
T Consensus 47 ~~ll~--G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFS--GTRGVGKTSIAR 63 (250)
T ss_dssp EEEEE--CSTTSCHHHHHH
T ss_pred EEEEE--CCCCCCHHHHHH
Confidence 44555 799999999974
No 138
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=54.43 E-value=4.4 Score=37.62 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=28.5
Q ss_pred ceeeeccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHH
Q psy13078 19 FSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSER 57 (325)
Q Consensus 19 ~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~e 57 (325)
+-++-|.|.-++-.=+.-+++++++| |.|+|.=++..
T Consensus 4 ~~i~~GtFdP~h~GHl~~~~~a~~~~--d~v~v~~~~~~ 40 (365)
T 1lw7_A 4 VGVIFGKFYPVHTGHINMIYEAFSKV--DELHVIVCSDT 40 (365)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEECH
T ss_pred EEEEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEECCCC
Confidence 34566888888888888999999998 88776655444
No 139
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=54.13 E-value=3.3 Score=37.38 Aligned_cols=25 Identities=24% Similarity=-0.063 Sum_probs=17.3
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.++..|.| ..+. -|+|||||.||-.
T Consensus 31 ~~~~~p~~--lLl~--GppGtGKT~la~a 55 (293)
T 3t15_A 31 PNIKVPLI--LGIW--GGKGQGKSFQCEL 55 (293)
T ss_dssp TTCCCCSE--EEEE--ECTTSCHHHHHHH
T ss_pred CCCCCCeE--EEEE--CCCCCCHHHHHHH
Confidence 34555533 4555 7999999999864
No 140
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=54.09 E-value=5.6 Score=38.17 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=17.8
Q ss_pred eCCCCceEEEEeecCCccChhhhccc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+-|.|+..-+. .|+|||||+|+.+
T Consensus 165 ~i~~~~~i~l~--G~~GsGKSTl~~~ 188 (377)
T 1svm_A 165 NIPKKRYWLFK--GPIDSGKTTLAAA 188 (377)
T ss_dssp CCTTCCEEEEE--CSTTSSHHHHHHH
T ss_pred ccCCCCEEEEE--CCCCCCHHHHHHH
Confidence 34567655555 7999999999864
No 141
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=53.14 E-value=5.9 Score=32.89 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=18.0
Q ss_pred EEEeecCCccChhhhcccCCCCCCceEEE
Q psy13078 286 YIAAAFPSACGKTNLAMLNPTLPGYKVEC 314 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl~p~~pGwkv~~ 314 (325)
.|.-..|+|||||++|-..-..-||.+--
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 44445899999999986432222555433
No 142
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=52.86 E-value=6.2 Score=37.84 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=14.9
Q ss_pred EEEeecCCccChhhhcccC
Q psy13078 286 YIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl~ 304 (325)
-|+-..|+|||||.||...
T Consensus 42 lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3445589999999999843
No 143
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=52.27 E-value=7 Score=39.17 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=28.6
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
.++=+.|+.+-+. -|||||||+|+-+. ++..| +|..=|-||.
T Consensus 375 sl~i~~G~~~~iv--G~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~i~ 420 (598)
T 3qf4_B 375 TFHIKPGQKVALV--GPTGSGKTTIVNLLMRFYDVDRG-QILVDGIDIR 420 (598)
T ss_dssp EEECCTTCEEEEE--CCTTSSTTHHHHHHTTSSCCSEE-EEEETTEEGG
T ss_pred EEEEcCCCEEEEE--CCCCCcHHHHHHHHhcCcCCCCe-EEEECCEEhh
Confidence 3555779988888 79999999986532 33334 4666565654
No 144
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=52.23 E-value=3.8 Score=37.75 Aligned_cols=36 Identities=25% Similarity=0.130 Sum_probs=25.3
Q ss_pred CceEEEEeecCCccChhhhcccCC-C--CCCceEEEecccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGVPY 319 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p-~--~pGwkv~~VGDDI 319 (325)
++..-++ .|+|||||+++...- . ..|.||-.++-|+
T Consensus 98 ~~vi~i~--G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLV--GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEE--CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEE--CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5555554 699999998765321 1 2489999999886
No 145
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=52.16 E-value=5 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---CCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG 316 (325)
|.|+.+-|+ -|+|||||+||+-.- ..+|-+|-.+.
T Consensus 59 ~~G~iv~I~--G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 59 PRGRVIEIY--GPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCeEEEEE--CCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 458887777 689999999976321 12466665554
No 146
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=52.12 E-value=3 Score=39.54 Aligned_cols=46 Identities=20% Similarity=0.080 Sum_probs=29.7
Q ss_pred hhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEeccccc
Q psy13078 267 WLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 267 WLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA 320 (325)
|+.=|-..+.+ .|+-.-|+ -|||+|||.||...= --|| +.|+||..
T Consensus 132 ~~~~H~~~v~~---~g~~vl~~--G~sG~GKSt~a~~l~-~~g~--~lv~dD~~ 177 (314)
T 1ko7_A 132 TTSLHGVLVDV---YGVGVLIT--GDSGIGKSETALELI-KRGH--RLVADDNV 177 (314)
T ss_dssp EEEEESEEEEE---TTEEEEEE--ESTTSSHHHHHHHHH-HTTC--EEEESSEE
T ss_pred ceeeeEEEEEE---CCEEEEEE--eCCCCCHHHHHHHHH-hcCC--ceecCCeE
Confidence 45556655544 46555555 799999998874210 1388 88999954
No 147
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=51.45 E-value=5.7 Score=40.15 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=19.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++=+.|+.+=|. -|||||||+|.-
T Consensus 343 l~I~~Ge~vaIi--GpnGsGKSTLl~ 366 (670)
T 3ux8_A 343 VKIPLGTFVAVT--GVSGSGKSTLVN 366 (670)
T ss_dssp EEEETTSEEEEE--CSTTSSHHHHHT
T ss_pred eEecCCCEEEEE--eeCCCCHHHHHH
Confidence 444678877676 899999999973
No 148
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=51.42 E-value=3.7 Score=38.93 Aligned_cols=79 Identities=14% Similarity=-0.006 Sum_probs=44.6
Q ss_pred cCCCCeEEEeCCCcchhhhhhhhhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCC
Q psy13078 229 KPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLP 308 (325)
Q Consensus 229 ~p~~r~I~S~gSgYGGNaLLgKKcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~p 308 (325)
.-++..|.=|.|.+.-..+.++=...| ....| .|+.=|--.+.+ .|+-.-|+ -|||.|||.||... -..
T Consensus 102 ~A~e~~ipLl~T~~~t~~~~~~L~~~l--~~~la---~~~~~H~~~v~~---~g~gvli~--G~sG~GKStlal~l-~~~ 170 (312)
T 1knx_A 102 VNQTYQVPILKTDFFSTELSFTVETYI--NEQFA---TVAQIHGVLLEV---FGVGVLLT--GRSGIGKSECALDL-INK 170 (312)
T ss_dssp HGGGTCCCEEEESSCGGGGTTTHHHHH--HHHTC---CCEEEEEEEEEE---TTEEEEEE--ESSSSSHHHHHHHH-HTT
T ss_pred HHHHcCCEEEEeCccHHHHHHHHHHHH--HHHhh---hcceeEEEEEEE---CCEEEEEE--cCCCCCHHHHHHHH-HHc
Confidence 344555555566666666655422111 11111 234445544433 45555555 79999999887531 126
Q ss_pred CceEEEeccccc
Q psy13078 309 GYKVECVGVPYK 320 (325)
Q Consensus 309 Gwkv~~VGDDIA 320 (325)
|| +.|+||..
T Consensus 171 G~--~lv~DD~v 180 (312)
T 1knx_A 171 NH--LFVGDDAI 180 (312)
T ss_dssp TC--EEEEEEEE
T ss_pred CC--EEEeCCEE
Confidence 99 89999964
No 149
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=51.38 E-value=6.3 Score=32.70 Aligned_cols=31 Identities=32% Similarity=0.217 Sum_probs=14.7
Q ss_pred hHHhhhhhceeCCCCceEEEEeecCCccChhhhc
Q psy13078 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 268 LAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+++||-=+.. +.+..-|+-..++++|||+|.
T Consensus 17 ~~~~m~~~~~---~~~~~ki~vvG~~~~GKSsLi 47 (204)
T 4gzl_A 17 RGSHMENLYF---QGQAIKCVVVGDGAVGKTCLL 47 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHH
T ss_pred chhHHHhHhh---cCCeEEEEEECcCCCCHHHHH
Confidence 5788864432 244566666789999999996
No 150
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=51.36 E-value=4 Score=35.67 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=14.4
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
.-.++. -|+|||||.||-.
T Consensus 65 ~~vLl~--G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLE--GPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEE--CSTTSSHHHHHHH
T ss_pred eEEEEE--CCCCCcHHHHHHH
Confidence 345555 8999999999854
No 151
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=50.84 E-value=4.2 Score=41.09 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=26.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEe-cccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECV-GVPY 319 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~V-GDDI 319 (325)
.+|+.++++ -|||||||+|+-+. ++..|+++.++ ||++
T Consensus 367 ~~G~iI~Li--G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFT--GLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEE--ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEE--CCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 468888888 68999999987532 23457778744 5554
No 152
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=50.73 E-value=4.1 Score=36.98 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=14.7
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
+-.++. .|+|||||.||-.
T Consensus 52 ~~vLl~--GppGtGKT~la~a 70 (322)
T 3eie_A 52 SGILLY--GPPGTGKSYLAKA 70 (322)
T ss_dssp CEEEEE--CSSSSCHHHHHHH
T ss_pred CeEEEE--CCCCCcHHHHHHH
Confidence 345666 7999999999854
No 153
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=50.72 E-value=6.4 Score=35.51 Aligned_cols=20 Identities=40% Similarity=0.410 Sum_probs=16.3
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|+-.++. .|+|||||.||-.
T Consensus 70 ~~~vLl~--GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIA--GQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEE--ESTTSSHHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHHH
Confidence 5677777 7999999999863
No 154
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=50.32 E-value=6.1 Score=39.39 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=18.5
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+++.-|.| ..+. -|+|||||.||-.
T Consensus 59 lg~~ip~G--vLL~--GppGtGKTtLara 83 (499)
T 2dhr_A 59 MGARIPKG--VLLV--GPPGVGKTHLARA 83 (499)
T ss_dssp TSCCCCSE--EEEE--CSSSSSHHHHHHH
T ss_pred ccCCCCce--EEEE--CCCCCCHHHHHHH
Confidence 45666777 4555 8999999999753
No 155
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.89 E-value=6.8 Score=35.53 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=11.8
Q ss_pred ecCCccChhhhccc
Q psy13078 290 AFPSACGKTNLAML 303 (325)
Q Consensus 290 AFPSaCGKTnlAMl 303 (325)
..|+|||||.||-.
T Consensus 52 ~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 52 YGPPGTGKTSTIVA 65 (340)
T ss_dssp ECSSSSSHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 37999999999864
No 156
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=49.82 E-value=7.6 Score=34.60 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.1
Q ss_pred ceEEEEeecCCccChhhhcc
Q psy13078 283 QKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAM 302 (325)
+-.+|+-.-++|||||+++-
T Consensus 20 ~~~~i~~~G~~g~GKst~~~ 39 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSH 39 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 44677777999999999874
No 157
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=49.73 E-value=4.3 Score=37.28 Aligned_cols=15 Identities=40% Similarity=0.293 Sum_probs=12.4
Q ss_pred ecCCccChhhhcccC
Q psy13078 290 AFPSACGKTNLAMLN 304 (325)
Q Consensus 290 AFPSaCGKTnlAMl~ 304 (325)
..|+|||||.+|-..
T Consensus 57 ~GppGtGKT~la~~i 71 (363)
T 3hws_A 57 IGPTGSGKTLLAETL 71 (363)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 489999999998643
No 158
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=49.64 E-value=6.3 Score=39.04 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=18.1
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+|++-|.| ..+. .|+|||||.||-
T Consensus 44 ~g~~~p~g--vLL~--GppGtGKT~Lar 67 (476)
T 2ce7_A 44 IGARMPKG--ILLV--GPPGTGKTLLAR 67 (476)
T ss_dssp TTCCCCSE--EEEE--CCTTSSHHHHHH
T ss_pred cCCCCCCe--EEEE--CCCCCCHHHHHH
Confidence 45666766 4555 799999999974
No 159
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=49.01 E-value=5.3 Score=37.50 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=15.9
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+..-|+ -|||||||+|+=
T Consensus 173 ~~G~~i~iv--G~sGsGKSTll~ 193 (361)
T 2gza_A 173 QLERVIVVA--GETGSGKTTLMK 193 (361)
T ss_dssp HTTCCEEEE--ESSSSCHHHHHH
T ss_pred hcCCEEEEE--CCCCCCHHHHHH
Confidence 457766666 799999999753
No 160
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=48.76 E-value=8.5 Score=30.68 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=15.2
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
+.-.++. -|+|||||.+|=.
T Consensus 24 ~~~vll~--G~~GtGKt~lA~~ 43 (145)
T 3n70_A 24 DIAVWLY--GAPGTGRMTGARY 43 (145)
T ss_dssp CSCEEEE--SSTTSSHHHHHHH
T ss_pred CCCEEEE--CCCCCCHHHHHHH
Confidence 4456666 7999999999853
No 161
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=48.68 E-value=4.6 Score=37.04 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=14.6
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
+-..+. .|+|||||.||-.
T Consensus 46 ~~iLL~--GppGtGKT~la~a 64 (322)
T 1xwi_A 46 RGILLF--GPPGTGKSYLAKA 64 (322)
T ss_dssp SEEEEE--SSSSSCHHHHHHH
T ss_pred ceEEEE--CCCCccHHHHHHH
Confidence 445565 8999999999853
No 162
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.93 E-value=7.7 Score=34.90 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=15.2
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
++-.+|. .|+|||||.||-
T Consensus 45 ~~~vll~--G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFL--GLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEE--ECTTSSHHHHHH
T ss_pred CCcEEEE--CCCCCCHHHHHH
Confidence 4456666 799999999985
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=47.93 E-value=8.7 Score=36.96 Aligned_cols=32 Identities=22% Similarity=0.137 Sum_probs=20.9
Q ss_pred CceEEEEeecCCccChhhhcccCC-----CCCCceEEEe
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNP-----TLPGYKVECV 315 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p-----~~pGwkv~~V 315 (325)
+.-.++. .|+|||||.||...- ..||.+|-.+
T Consensus 130 ~~~lll~--Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 130 YNPLFIY--GGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp SCCEEEE--CSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCeEEEE--CCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 3456666 699999999986431 2356665544
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=47.83 E-value=3.7 Score=36.67 Aligned_cols=28 Identities=7% Similarity=-0.173 Sum_probs=12.7
Q ss_pred cCCccChhhhccc----CCCCCCceEEEecccc
Q psy13078 291 FPSACGKTNLAML----NPTLPGYKVECVGVPY 319 (325)
Q Consensus 291 FPSaCGKTnlAMl----~p~~pGwkv~~VGDDI 319 (325)
-|||||||+|.-+ .++..| .|.+=|.++
T Consensus 34 GpnGsGKSTll~~i~g~~~~~~G-~i~~~g~~~ 65 (227)
T 1qhl_A 34 GGNGAGKSTTMAAFVTALIPDLT-LLHFRNTTE 65 (227)
T ss_dssp SCCSHHHHHHHHHHHHHHSCCTT-TC-------
T ss_pred CCCCCCHHHHHHHHhcccccCCC-eEEECCEEc
Confidence 3678999997432 233445 345545454
No 165
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=47.63 E-value=8.2 Score=33.72 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=21.4
Q ss_pred ceEEEEeecCCccChhhhccc-CCCCCCce
Q psy13078 283 QKKYIAAAFPSACGKTNLAML-NPTLPGYK 311 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl-~p~~pGwk 311 (325)
+-.+|+-..++|||||++|-+ ...+.||.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~ 52 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWE 52 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 346778789999999999854 34566763
No 166
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=47.57 E-value=7.4 Score=34.60 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=21.0
Q ss_pred ceEEEEeecCCccChhhhcc----cCCCCCCceEEEecccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDI 319 (325)
+.+-+. -|||||||+|.- +.++..| +|.+=|-|+
T Consensus 25 e~~~li--G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~ 62 (240)
T 2onk_A 25 DYCVLL--GPTGAGKSVFLELIAGIVKPDRG-EVRLNGADI 62 (240)
T ss_dssp SEEEEE--CCTTSSHHHHHHHHHTSSCCSEE-EEEETTEEC
T ss_pred EEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 444444 899999999864 2343344 466556555
No 167
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=47.54 E-value=9 Score=36.59 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=17.1
Q ss_pred CceEEEEeecCCccChhhhcccCCCCCCc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNPTLPGY 310 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p~~pGw 310 (325)
.+...++ -|||||||++|-..-..-||
T Consensus 258 ~~lIil~--G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 258 PEVVVAV--GFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp CCEEEEE--SCTTSSHHHHHHHHTGGGTC
T ss_pred CEEEEEE--CCCCCCHHHHHHHHHHhcCc
Confidence 3444444 79999999998642222356
No 168
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=47.48 E-value=7.5 Score=36.76 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=25.3
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
+.|+..-|+ .|||||||+|.=+. ++...-+|.+++|++.
T Consensus 134 ~~g~~i~iv--G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e 176 (372)
T 2ewv_A 134 RKMGLILVT--GPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 176 (372)
T ss_dssp SSSEEEEEE--CSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh
Confidence 446655454 89999999985322 2222457888888764
No 169
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=47.45 E-value=6.2 Score=37.72 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=17.6
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+.+-|. -|+|||||+||+-
T Consensus 59 ~~G~i~~I~--GppGsGKSTLal~ 80 (356)
T 3hr8_A 59 PRGRIVEIF--GQESSGKTTLALH 80 (356)
T ss_dssp ETTEEEEEE--ESTTSSHHHHHHH
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 458877777 5899999999763
No 170
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=47.26 E-value=5 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=14.2
Q ss_pred ceEEEEeecCCccChhhhcc
Q psy13078 283 QKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAM 302 (325)
.-.++. .|+|||||.||-
T Consensus 51 ~~vll~--G~~GtGKT~la~ 68 (310)
T 1ofh_A 51 KNILMI--GPTGVGKTEIAR 68 (310)
T ss_dssp CCEEEE--CCTTSSHHHHHH
T ss_pred ceEEEE--CCCCCCHHHHHH
Confidence 345565 899999999985
No 171
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=45.88 E-value=4.8 Score=32.20 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=15.6
Q ss_pred CceEEEEeecCCccChhhhcccC
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+.-.++. .|+|||||.+|-..
T Consensus 27 ~~~vll~--G~~GtGKt~lA~~i 47 (143)
T 3co5_A 27 TSPVFLT--GEAGSPFETVARYF 47 (143)
T ss_dssp SSCEEEE--EETTCCHHHHHGGG
T ss_pred CCcEEEE--CCCCccHHHHHHHH
Confidence 3446666 79999999998644
No 172
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=45.65 E-value=8 Score=36.85 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=17.1
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+-|+ -|++||||.||+
T Consensus 72 ~~G~li~I~--G~pGsGKTtlal 92 (366)
T 1xp8_A 72 PRGRITEIY--GPESGGKTTLAL 92 (366)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred cCCcEEEEE--cCCCCChHHHHH
Confidence 568887775 588999999986
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=45.14 E-value=5.7 Score=35.57 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=14.0
Q ss_pred EEEEeecCCccChhhhcccC
Q psy13078 285 KYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~ 304 (325)
..+. .|+|||||.||-..
T Consensus 58 vll~--G~~GtGKT~la~~i 75 (338)
T 3pfi_A 58 ILFS--GPAGLGKTTLANII 75 (338)
T ss_dssp EEEE--CSTTSSHHHHHHHH
T ss_pred EEEE--CcCCCCHHHHHHHH
Confidence 4555 79999999998643
No 174
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=44.94 E-value=7.5 Score=42.92 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.6
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++=|.|+++-|. -|||||||+|+-+.
T Consensus 439 l~i~~G~~vaiv--G~sGsGKSTll~ll 464 (1321)
T 4f4c_A 439 LRVNAGQTVALV--GSSGCGKSTIISLL 464 (1321)
T ss_dssp EEECTTCEEEEE--ECSSSCHHHHHHHH
T ss_pred EeecCCcEEEEE--ecCCCcHHHHHHHh
Confidence 455789999888 79999999998753
No 175
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=44.73 E-value=19 Score=31.44 Aligned_cols=105 Identities=9% Similarity=0.031 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHH----hcCcccccC--CCCCcEEeccCCCcccccccceEEEcCC
Q psy13078 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMV----KDKTLRPVP--KYENCWLARTNPADVARVESKTFICTQE 104 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~----~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~t~~ 104 (325)
+++++++++... +.|+.|++++|+.+=.+.+...+. +.|..+-+. .|+.. ..+-..++-..-+.+..+-
T Consensus 46 ~~~~~~la~~~~-~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~----~~~~~~~~~~g~~~~~v~~ 120 (382)
T 4hvk_A 46 QEAREKVAKLVN-GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSV----INPAKFLQKQGFEVEYIPV 120 (382)
T ss_dssp HHHHHHHHHHTT-CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHH----HHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHcC-CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHH----HHHHHHHHhcCCEEEEecc
Confidence 366666666655 368899999999988888877776 666433332 11111 1111111111222222111
Q ss_pred CCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 105 KAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 105 ~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
.++ .-+|++++++.+++. ..+++++-.-.|.|....
T Consensus 121 ~~~--------------~~~d~~~l~~~i~~~-------~~~v~~~~~~nptG~~~~ 156 (382)
T 4hvk_A 121 GKY--------------GEVDVSFIDQKLRDD-------TILVSVQHANNEIGTIQP 156 (382)
T ss_dssp CTT--------------SCBCHHHHHHHCCTT-------EEEEECCSBCTTTCBBCC
T ss_pred CCC--------------CCcCHHHHHHHhccC-------ceEEEEECCCCCceeeCC
Confidence 111 236888888777542 247777777778886543
No 176
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=44.42 E-value=12 Score=35.39 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=14.7
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
.|+..-|. -|+|||||||.
T Consensus 25 ~~~~~~i~--G~nG~GKstll 43 (430)
T 1w1w_A 25 ESNFTSII--GPNGSGKSNMM 43 (430)
T ss_dssp TCSEEEEE--CSTTSSHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHH
Confidence 36666666 79999999963
No 177
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=43.78 E-value=8.4 Score=37.56 Aligned_cols=36 Identities=22% Similarity=0.077 Sum_probs=24.6
Q ss_pred CCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEecc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGV 317 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGD 317 (325)
=++|+..=|. -|||||||+|..+. ++..| .|...|-
T Consensus 154 i~~Gq~~~Iv--G~sGsGKSTLl~~Iag~~~~~~G-~i~~~G~ 193 (438)
T 2dpy_A 154 VGRGQRMGLF--AGSGVGKSVLLGMMARYTRADVI-VVGLIGE 193 (438)
T ss_dssp CBTTCEEEEE--ECTTSSHHHHHHHHHHHSCCSEE-EEEEESC
T ss_pred ecCCCEEEEE--CCCCCCHHHHHHHHhcccCCCeE-EEEEece
Confidence 3468887777 59999999996542 33334 5666665
No 178
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=43.76 E-value=4.6 Score=33.70 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=22.1
Q ss_pred EEeecCCccChhhhcc--cCCCCCCceEEEeccccc
Q psy13078 287 IAAAFPSACGKTNLAM--LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 287 iaaAFPSaCGKTnlAM--l~p~~pGwkv~~VGDDIA 320 (325)
|+-.-++++|||+|+. +.-.....++-+|++|..
T Consensus 41 i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 3333569999999953 222233478888888863
No 179
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=43.76 E-value=9.4 Score=36.56 Aligned_cols=20 Identities=40% Similarity=0.477 Sum_probs=15.9
Q ss_pred CCceEEEEeecCCccChhhhcc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.|+.+-|+ .|+|+|||.||+
T Consensus 199 ~G~l~ii~--G~pg~GKT~lal 218 (444)
T 2q6t_A 199 PGSLNIIA--ARPAMGKTAFAL 218 (444)
T ss_dssp TTCEEEEE--ECTTSCHHHHHH
T ss_pred CCcEEEEE--eCCCCCHHHHHH
Confidence 47766665 689999999987
No 180
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=43.50 E-value=10 Score=34.63 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.3
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++-.|+. .|+|+|||.||..
T Consensus 152 ~~~lll~--G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLY--GDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEE--CSTTSSHHHHHHH
T ss_pred CceEEEE--CCCCCCHHHHHHH
Confidence 5677887 7999999999753
No 181
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=42.37 E-value=36 Score=31.21 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHhhcCCCeEEEEcCCHHHH--HHHHHHHHhc---C-----------cccccCCCCCcEEeccCCCcccc
Q psy13078 30 SPKLKSFIDNCVELCQPSDVHICDGSEREY--KELIDLMVKD---K-----------TLRPVPKYENCWLARTNPADVAR 93 (325)
Q Consensus 30 ~~~v~~~V~e~a~L~~P~~I~icdGS~eE~--~~l~~~l~~~---G-----------~~~~L~~~~n~~l~rsdp~DvAR 93 (325)
.+++++.|++... +.|+.|++..|+.+-. ..+.+.+... | .+.+-+.|++. .++++
T Consensus 78 ~~~lr~~ia~~~~-~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~-------~~~~~ 149 (422)
T 3d6k_A 78 IADIRELWAEALG-LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRH-------FTITE 149 (422)
T ss_dssp CHHHHHHHHHHHT-CCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHH-------HHHHH
T ss_pred CHHHHHHHHHHhC-CChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHH-------HHHHH
Confidence 6778888888876 7899999999998765 4555555544 2 11111222211 23444
Q ss_pred cccceEEEcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 94 VESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 94 ve~rTfI~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
.-..+.+-.+-.++ . ++++++++.+++. +-|-+|++|..--|.|..++
T Consensus 150 ~~g~~~~~v~~~~~--------------g-~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~ 197 (422)
T 3d6k_A 150 HFGFEMINVPMTDE--------------G-PDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFS 197 (422)
T ss_dssp HHTCEEEEEEEETT--------------E-ECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCC
T ss_pred HcCCEEEecCCCCC--------------C-CCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCC
Confidence 43433332221111 1 6788888877541 12345668888889998765
No 182
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=42.35 E-value=9.5 Score=38.56 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
++=++|+.+-+. -|||||||+|.
T Consensus 39 l~i~~Ge~~~li--GpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLT--GLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEE--CSTTSSHHHHH
T ss_pred EEECCCCEEEEE--CCCCCCHHHHh
Confidence 444678888777 79999999994
No 183
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=42.33 E-value=11 Score=37.41 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=15.7
Q ss_pred CCceEEEEeecCCccChhhhccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.|+..-+. .|+|||||.||-.
T Consensus 107 ~g~~vll~--Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLA--GPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEE--SSSSSSHHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 35555555 8999999999854
No 184
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=41.91 E-value=7.8 Score=37.22 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=16.3
Q ss_pred CCCceEEEEeecCCccChhhhccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|.|+..-| ..|+|||||.||+-
T Consensus 121 ~~gsviLI--~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 121 YASGMVIV--TGKGNSGKTPLVHA 142 (331)
T ss_dssp EESEEEEE--ECSCSSSHHHHHHH
T ss_pred CCCcEEEE--EcCCCCCHHHHHHH
Confidence 34665544 48999999999874
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=41.90 E-value=11 Score=36.13 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=23.6
Q ss_pred CCCceEEEEeecCCccChhhhcccCCC----CCCceEEEecc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNPT----LPGYKVECVGV 317 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p~----~pGwkv~~VGD 317 (325)
+.|+.+-|+ .|+|+|||.||+-.-- -.|.+|-.++=
T Consensus 201 ~~G~liiI~--G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVA--ARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEE--CCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 347765555 7999999999874211 13677766653
No 186
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=41.89 E-value=8.1 Score=37.84 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=26.2
Q ss_pred CCceEEEEeecCCccChhhhcccCC---CCCCceEEEeccccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGVPYK 320 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VGDDIA 320 (325)
.++..-++ -|+|||||+++...- ...|.+|-.++-|+-
T Consensus 97 ~~~vi~i~--G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLV--GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEE--CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 35555555 589999998865221 124999999998864
No 187
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=41.81 E-value=12 Score=37.32 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=17.2
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+.+-+. -|||||||+|.-
T Consensus 45 ~~Ge~~~Lv--G~NGaGKSTLlk 65 (538)
T 1yqt_A 45 KEGMVVGIV--GPNGTGKSTAVK 65 (538)
T ss_dssp CTTSEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 458887777 799999999864
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=41.63 E-value=6.9 Score=36.36 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=13.6
Q ss_pred EEEEeecCCccChhhhccc
Q psy13078 285 KYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl 303 (325)
..+. .|+|||||.||-.
T Consensus 87 iLL~--GppGtGKT~la~a 103 (355)
T 2qp9_X 87 ILLY--GPPGTGKSYLAKA 103 (355)
T ss_dssp EEEE--CSTTSCHHHHHHH
T ss_pred EEEE--CCCCCcHHHHHHH
Confidence 5555 7999999999853
No 189
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=41.45 E-value=10 Score=37.95 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=16.9
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+..=+. -|||||||+|+-
T Consensus 292 ~~Gei~~i~--G~nGsGKSTLl~ 312 (538)
T 3ozx_A 292 KEGEIIGIL--GPNGIGKTTFAR 312 (538)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568877666 899999999863
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.10 E-value=8.6 Score=34.45 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=12.9
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
..|. .|+|||||+||-
T Consensus 39 ~ll~--Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLY--GPNGTGKKTRCM 54 (354)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4444 899999999984
No 191
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=41.08 E-value=13 Score=35.98 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=17.0
Q ss_pred CCceEEEEeecCCccChhhhcc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+|+..-|.-..|+|||||++|-
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHH
Confidence 4666555566899999999984
No 192
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=41.00 E-value=6.9 Score=34.51 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=14.4
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
....+. .|+|||||.||-.
T Consensus 39 ~~vll~--G~~GtGKT~la~~ 57 (324)
T 1hqc_A 39 EHLLLF--GPPGLGKTTLAHV 57 (324)
T ss_dssp CCCEEE--CCTTCCCHHHHHH
T ss_pred CcEEEE--CCCCCCHHHHHHH
Confidence 345555 7999999999853
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=40.91 E-value=14 Score=30.24 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=15.1
Q ss_pred eEEEEeecCCccChhhhcc
Q psy13078 284 KKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAM 302 (325)
..-++---|++||||+|.-
T Consensus 29 ~~kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHH
Confidence 3456777899999999963
No 194
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=40.84 E-value=9.2 Score=37.56 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=26.2
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcccC----CCCCCce-EEEec
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYK-VECVG 316 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwk-v~~VG 316 (325)
+.++=+.|+..-|. -|||||||+|+-+. ++..||+ |.+=|
T Consensus 131 vsl~i~~Ge~v~Iv--GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 131 IRMSNFEGPRVVIV--GGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHSSSCCCEEEE--ESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred CceEeCCCCEEEEE--CCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 33444578887777 79999999987532 2234546 65544
No 195
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=40.76 E-value=13 Score=32.50 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=20.1
Q ss_pred EEEEeecCCccChhhhcccC-CCCC-CceEEEe
Q psy13078 285 KYIAAAFPSACGKTNLAMLN-PTLP-GYKVECV 315 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl~-p~~p-Gwkv~~V 315 (325)
.+|+---|+|||||+++-+. .-++ |++|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 46666689999999987532 1111 6766544
No 196
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=40.70 E-value=13 Score=34.23 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=14.5
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
.-.++. .|+|||||.||-.
T Consensus 73 ~~ill~--Gp~GtGKT~la~~ 91 (376)
T 1um8_A 73 SNILLI--GPTGSGKTLMAQT 91 (376)
T ss_dssp CCEEEE--CCTTSSHHHHHHH
T ss_pred CCEEEE--CCCCCCHHHHHHH
Confidence 345666 7999999999853
No 197
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=40.52 E-value=9.9 Score=36.01 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=24.4
Q ss_pred EEEeecCCccChhhhccc----CCCCCCceEEEecccccc
Q psy13078 286 YIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYKG 321 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA~ 321 (325)
.++-.-|+|||||+|.-+ .++..|-+|-++.|.+.-
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~ 164 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF 164 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh
Confidence 344448999999998532 133347788888887653
No 198
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=40.51 E-value=11 Score=40.32 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=19.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|+=|.|+-+=|| -+|||||++||+
T Consensus 31 v~iP~~~l~viT--GvSGSGKSSLaf 54 (842)
T 2vf7_A 31 VKVPRDALVVFT--GVSGSGKSSLAF 54 (842)
T ss_dssp EEEESSSEEEEE--SSTTSSHHHHHT
T ss_pred EEecCCCEEEEE--CCCCCCHHHHHH
Confidence 455878777777 899999999997
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=40.37 E-value=7.4 Score=36.01 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=15.2
Q ss_pred CceEEEEeecCCccChhhhccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.+-..+. .|+|||||.||-.
T Consensus 117 ~~~vLl~--GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLF--GPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEE--SSTTSSHHHHHHH
T ss_pred CceEEEE--CCCCCCHHHHHHH
Confidence 3445665 8999999999854
No 200
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=40.15 E-value=12 Score=32.20 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=11.5
Q ss_pred EEEeecCCccChhhh
Q psy13078 286 YIAAAFPSACGKTNL 300 (325)
Q Consensus 286 yiaaAFPSaCGKTnl 300 (325)
.+...-|+|||||.+
T Consensus 78 ~~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 78 VVIIRGATGCGKTTQ 92 (235)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCcHHh
Confidence 455568999999973
No 201
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=40.13 E-value=9.3 Score=40.58 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=22.8
Q ss_pred hceeCCCCceEEEEeecCCccChhhhcccCCCCCCc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGY 310 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGw 310 (325)
+|+.-|.|--.| -|+|||||.||-..-..-|.
T Consensus 233 ~g~~~p~GILL~----GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 233 IGVKPPRGILLY----GPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCCEEEEE----CCTTSCHHHHHHHHHTTTTC
T ss_pred cCCCCCCeEEEE----CCCCCCHHHHHHHHHHHhCC
Confidence 577888775555 89999999998754433344
No 202
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=40.03 E-value=7.5 Score=37.32 Aligned_cols=14 Identities=50% Similarity=0.601 Sum_probs=12.1
Q ss_pred ecCCccChhhhccc
Q psy13078 290 AFPSACGKTNLAML 303 (325)
Q Consensus 290 AFPSaCGKTnlAMl 303 (325)
..|+|||||.||..
T Consensus 69 ~GppGtGKT~la~a 82 (456)
T 2c9o_A 69 AGPPGTGKTALALA 82 (456)
T ss_dssp ECCTTSSHHHHHHH
T ss_pred ECCCcCCHHHHHHH
Confidence 48999999999864
No 203
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=39.86 E-value=17 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=17.7
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+.-++.=|+-..+++||||+|.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~ 37 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALV 37 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHH
T ss_pred CCCCeeEEEEECCCCCCHHHHH
Confidence 3456677777889999999997
No 204
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.55 E-value=7.9 Score=34.41 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=13.1
Q ss_pred EEEEeecCCccChhhhccc
Q psy13078 285 KYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAMl 303 (325)
..+. .|+|||||.||-.
T Consensus 61 ~ll~--G~~G~GKT~la~~ 77 (353)
T 1sxj_D 61 MLFY--GPPGTGKTSTILA 77 (353)
T ss_dssp EEEE--CSTTSSHHHHHHH
T ss_pred EEEE--CCCCCCHHHHHHH
Confidence 4444 7999999999853
No 205
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=39.48 E-value=14 Score=33.56 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=13.8
Q ss_pred CceEEEEeecCCccChhhhc
Q psy13078 282 GQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlA 301 (325)
|+...+. -|||||||+|.
T Consensus 169 geiv~l~--G~sG~GKSTll 186 (301)
T 1u0l_A 169 GKISTMA--GLSGVGKSSLL 186 (301)
T ss_dssp SSEEEEE--CSTTSSHHHHH
T ss_pred CCeEEEE--CCCCCcHHHHH
Confidence 5655555 69999999875
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=39.41 E-value=11 Score=35.07 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=14.7
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
.|+..-|+ .|||||||+|.
T Consensus 170 ~g~~v~i~--G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNVIVC--GGTGSGKTTYI 188 (330)
T ss_dssp HTCCEEEE--ESTTSCHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHH
Confidence 47666666 69999999974
No 207
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=39.40 E-value=88 Score=28.52 Aligned_cols=39 Identities=8% Similarity=-0.048 Sum_probs=31.0
Q ss_pred cCHHHHHHHHHHHhhcCCCeEEEEcCCHHHH--HHHHHHHHh
Q psy13078 29 ISPKLKSFIDNCVELCQPSDVHICDGSEREY--KELIDLMVK 68 (325)
Q Consensus 29 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~--~~l~~~l~~ 68 (325)
-.+++++.|++... +.|+.|++.+|+.+=. +.+...+++
T Consensus 79 g~~~lr~~ia~~~~-~~~~~i~~t~G~~~al~~~~~~~~l~~ 119 (427)
T 3ppl_A 79 GIVDIRQIWADLLG-VPVEQVLAGDASSLNIMFDVISWSYIF 119 (427)
T ss_dssp CCHHHHHHHHHHHT-SCGGGEEECSSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC-CCcceEEEeCCcHHHHHHHHHHHHHhc
Confidence 34778888888775 7899999999999887 466666666
No 208
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=38.84 E-value=11 Score=40.71 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=19.9
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|+=|.++-+=|| -+|||||++||+
T Consensus 19 ~~ip~~~l~v~t--G~SGSGKSsLaf 42 (916)
T 3pih_A 19 VRIPKNRLVVIT--GVSGSGKSSLAM 42 (916)
T ss_dssp CEEETTSEEEEE--ESTTSSSHHHHT
T ss_pred eccCCCcEEEEE--CCCCCcHHHHHH
Confidence 455878777777 799999999998
No 209
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=38.75 E-value=8.2 Score=34.39 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=11.1
Q ss_pred cCCccChhhhccc
Q psy13078 291 FPSACGKTNLAML 303 (325)
Q Consensus 291 FPSaCGKTnlAMl 303 (325)
-|+|||||.+|-.
T Consensus 55 G~~G~GKT~la~~ 67 (324)
T 3u61_B 55 PSPGTGKTTVAKA 67 (324)
T ss_dssp SSTTSSHHHHHHH
T ss_pred CcCCCCHHHHHHH
Confidence 5799999999864
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=38.39 E-value=15 Score=37.38 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=19.6
Q ss_pred hceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 275 LGITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 275 lgit~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
.|+.+|+.-...+.=..|+|||||.||-.
T Consensus 479 ~g~~~~~~p~~~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 479 AGLGHEHKPVGSFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp TTCSCTTSCSEEEEEECSTTSSHHHHHHH
T ss_pred cccCCCCCCceEEEEECCCCCcHHHHHHH
Confidence 35666654433444458999999999843
No 211
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=38.28 E-value=20 Score=34.80 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=24.8
Q ss_pred CCceEEEEeecCCccChhhhccc----CCCCCCceEEEeccccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAML----NPTLPGYKVECVGVPYK 320 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl----~p~~pGwkv~~VGDDIA 320 (325)
.|...-|+ -|+|||||+|.-+ .++ ..-+|.+++|++-
T Consensus 166 ~ggii~I~--GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~ie 206 (418)
T 1p9r_A 166 PHGIILVT--GPTGSGKSTTLYAGLQELNS-SERNILTVEDPIE 206 (418)
T ss_dssp SSEEEEEE--CSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSCC
T ss_pred cCCeEEEE--CCCCCCHHHHHHHHHhhcCC-CCCEEEEecccch
Confidence 35444444 8999999997421 132 2557999999884
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=38.26 E-value=12 Score=36.79 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=17.3
Q ss_pred ceeCCCCceEEEEeecCCccChhhhccc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
|+..|.| .++. .|+|||||.||-.
T Consensus 234 g~~~~~~--vLL~--GppGtGKT~lAra 257 (489)
T 3hu3_A 234 GVKPPRG--ILLY--GPPGTGKTLIARA 257 (489)
T ss_dssp TCCCCCE--EEEE--CSTTSSHHHHHHH
T ss_pred CCCCCCc--EEEE--CcCCCCHHHHHHH
Confidence 4555544 5666 7999999999854
No 213
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=38.09 E-value=10 Score=35.62 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=19.7
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.+..+.-.||. .|.|||||.++-
T Consensus 40 i~~~~~~~lli~--GpPGTGKT~~v~ 63 (318)
T 3te6_A 40 LMSSQNKLFYIT--NADDSTKFQLVN 63 (318)
T ss_dssp HHTTCCCEEEEE--CCCSHHHHHHHH
T ss_pred hcCCCCCeEEEE--CCCCCCHHHHHH
Confidence 456678888998 799999998864
No 214
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.05 E-value=7.4 Score=34.65 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=12.7
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
..+. .|+|||||.||-
T Consensus 48 vLl~--G~~GtGKT~la~ 63 (350)
T 1g8p_A 48 VLVF--GDRGTGKSTAVR 63 (350)
T ss_dssp EEEE--CCGGGCTTHHHH
T ss_pred EEEE--CCCCccHHHHHH
Confidence 4555 699999999975
No 215
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=37.92 E-value=56 Score=28.86 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=52.4
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCC-CCcCCCCCCCccCCCcc
Q psy13078 44 CQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEK-AETVPDTKPGVKGTLGN 122 (325)
Q Consensus 44 ~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~-~da~p~~~~Gv~~~l~n 122 (325)
+.|+.|+++.|+.+=.+.+...+++.|..+-+.. .+|.. ..+.++.-....+-.+-. .+ + ++
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~--~~~~~---~~~~~~~~g~~~~~~~~~~~~------~------~~ 150 (391)
T 4dq6_A 88 IKSEWLIYSPGVIPAISLLINELTKANDKIMIQE--PVYSP---FNSVVKNNNRELIISPLQKLE------N------GN 150 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECS--SCCTH---HHHHHHHTTCEEEECCCEECT------T------SC
T ss_pred CcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcC--CCCHH---HHHHHHHcCCeEEeeeeeecC------C------Cc
Confidence 6799999999999888888887776664332211 11111 112333333333322211 00 0 13
Q ss_pred c-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 123 W-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 123 w-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
| ++++++++.+.+ -.+.+++-.-.|.|..++
T Consensus 151 ~~~d~~~l~~~l~~--------~~~v~i~~p~nptG~~~~ 182 (391)
T 4dq6_A 151 YIMDYEDIENKIKD--------VKLFILCNPHNPVGRVWT 182 (391)
T ss_dssp EECCHHHHHHHCTT--------EEEEEEESSBTTTTBCCC
T ss_pred eEeeHHHHHHHhhc--------CCEEEEECCCCCCCcCcC
Confidence 3 688888887765 345667666777776643
No 216
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=37.85 E-value=37 Score=32.74 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCC----CCCcEEeccCCCcccccccceE
Q psy13078 30 SPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPK----YENCWLARTNPADVARVESKTF 99 (325)
Q Consensus 30 ~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~----~~n~~l~rsdp~DvARve~rTf 99 (325)
-.++-+|+-+..+.++ +.+|...+.+.|++.|-+..... .++||+.+.|-.-.+|-++++.
T Consensus 41 G~elVdWL~~~~~~~~---------~R~eA~~~g~~Ll~~G~i~hv~~~~~F~d~~~y~f~~~~~~~~~~s~~~ 105 (385)
T 3ml6_A 41 GSDVVDWLYHHVEGFP---------ERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSGGPRPYSPQP 105 (385)
T ss_dssp HHHHHHHHHHTCCSCS---------SHHHHHHHHHHHHHHSSEEESSSCSSCCSSSEEEECCCCC------CCC
T ss_pred hHHHHHHHHHccCCCC---------CHHHHHHHHHHHHhCCcEEEcCCcceecCcceEEeeccccccCccCCCC
Confidence 3577888877544332 68999999999999999998852 5889999999999999999886
No 217
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=37.61 E-value=16 Score=29.69 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=14.2
Q ss_pred HHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhc
Q psy13078 255 LRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 255 LRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
..-.++++..+-|+-.+|. . .+..-|+-.-++++|||+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~--~~~~ki~v~G~~~vGKSsli 45 (196)
T 2atv_A 6 HHSSGVDLGTENLYFQSMA-----K--SAEVKLAIFGRAGVGKSALV 45 (196)
T ss_dssp ----------------------------CCEEEEEECCTTSSHHHHH
T ss_pred ccccccCCCccccchhccC-----C--CCceEEEEECCCCCCHHHHH
Confidence 3445667777778888885 2 23445666678999999985
No 218
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=37.54 E-value=13 Score=33.62 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.4
Q ss_pred EEEeecCCccChhhhcc
Q psy13078 286 YIAAAFPSACGKTNLAM 302 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAM 302 (325)
.+.-.-|.|+|||.+|+
T Consensus 60 ~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGM 76 (212)
T ss_dssp EEEEESCGGGCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34555899999998876
No 219
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=37.42 E-value=15 Score=32.09 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=13.8
Q ss_pred EEEeecCCccChhhhccc
Q psy13078 286 YIAAAFPSACGKTNLAML 303 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl 303 (325)
.|.-.-|+|||||++|-+
T Consensus 31 ~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 444458999999999854
No 220
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=37.39 E-value=10 Score=37.12 Aligned_cols=36 Identities=11% Similarity=-0.161 Sum_probs=24.3
Q ss_pred CCCceEEEEeecCCccChhhhcccC----CCCCCceE-EEeccc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKV-ECVGVP 318 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv-~~VGDD 318 (325)
+.|+.+-|+ -|+|||||+|+... ++ .|-+| .++++|
T Consensus 279 ~~G~i~~i~--G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee 319 (525)
T 1tf7_A 279 FKDSIILAT--GATGTGKTLLVSRFVENACA-NKERAILFAYEE 319 (525)
T ss_dssp ESSCEEEEE--ECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSS
T ss_pred CCCcEEEEE--eCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeC
Confidence 568887777 79999999998742 22 36554 444544
No 221
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=37.09 E-value=13 Score=37.04 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=11.3
Q ss_pred cCCccChhhhccc
Q psy13078 291 FPSACGKTNLAML 303 (325)
Q Consensus 291 FPSaCGKTnlAMl 303 (325)
.|||||||.||-.
T Consensus 67 Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 67 GEPGTGKSMLGQA 79 (604)
T ss_dssp CCTTSSHHHHHHH
T ss_pred eCCCCCHHHHHHH
Confidence 6999999999863
No 222
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=36.89 E-value=13 Score=41.10 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=5.7
Q ss_pred ccccCCCeEEEE
Q psy13078 138 PGCMKGRTMYVI 149 (325)
Q Consensus 138 ~G~M~GRtMyVi 149 (325)
.+.++|||..+|
T Consensus 598 ~~~~~~~T~iii 609 (1321)
T 4f4c_A 598 DKAAKGRTTIII 609 (1321)
T ss_dssp HHHHTTSEEEEE
T ss_pred HHHhCCCEEEEE
Confidence 344445555444
No 223
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=36.68 E-value=13 Score=36.91 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.0
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+..-|. -|+|||||+|+=
T Consensus 310 ~~Ge~~~i~--G~NGsGKSTLlk 330 (538)
T 1yqt_A 310 KKGEVIGIV--GPNGIGKTTFVK 330 (538)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568877666 899999999964
No 224
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=36.65 E-value=17 Score=35.54 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=19.5
Q ss_pred ceEEEEeecCCccChhhhcccCCCCCCceEEE
Q psy13078 283 QKKYIAAAFPSACGKTNLAMLNPTLPGYKVEC 314 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~ 314 (325)
+-..++ .|+|||||.||-..--.-||.+-.
T Consensus 78 ~~lLL~--GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 78 RAAMLY--GPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp SEEEEE--CSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEE--CCCCCCHHHHHHHHHHHcCCCEEE
Confidence 455665 899999999986433222665543
No 225
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=36.40 E-value=16 Score=31.97 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=13.5
Q ss_pred ceEEEEeecCCccChhhhcc
Q psy13078 283 QKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAM 302 (325)
+...|. .|.|||||.|+-
T Consensus 32 ~~v~i~--G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLL--GIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEE--CCTTSSHHHHHH
T ss_pred CeEEEE--CCCcCCHHHHHH
Confidence 444454 899999999964
No 226
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=36.13 E-value=19 Score=30.10 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=16.6
Q ss_pred hhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 263 KREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 263 r~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
.-|||+-..+. .+..+..=|+-.-++++|||+|.-
T Consensus 10 ~~~~~~~~~~~-----~~~~~~~ki~lvG~~~vGKSsLi~ 44 (201)
T 2ew1_A 10 HSSGLVPRGSM-----EDYDFLFKIVLIGNAGVGKTCLVR 44 (201)
T ss_dssp -----------------CCSEEEEEEEEESTTSSHHHHHH
T ss_pred ccccccCCCCc-----cccccceEEEEECcCCCCHHHHHH
Confidence 35777655443 122345557777899999999864
No 227
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=36.11 E-value=53 Score=29.95 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=42.5
Q ss_pred eccccccCHHHHHHHHHHHhhcCCC-----eEEEEcCCHHHHHHHHHHHHhcC
Q psy13078 23 HGYVSAISPKLKSFIDNCVELCQPS-----DVHICDGSEREYKELIDLMVKDK 70 (325)
Q Consensus 23 ~g~~~~l~~~v~~~V~e~a~L~~P~-----~I~icdGS~eE~~~l~~~l~~~G 70 (325)
-||++.||+++++-+.+..+.++-. .|-++=|+..|.-.-.+.++++|
T Consensus 99 iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv~~g 151 (225)
T 3ugs_B 99 IGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKK 151 (225)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred EeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999998766 35666799999999999999998
No 228
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=35.83 E-value=9.6 Score=36.63 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=14.5
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
+-..+. .|+|||||.||-.
T Consensus 168 ~~vLL~--GppGtGKT~lA~a 186 (444)
T 2zan_A 168 RGILLF--GPPGTGKSYLAKA 186 (444)
T ss_dssp SEEEEE--CSTTSSHHHHHHH
T ss_pred ceEEEE--CCCCCCHHHHHHH
Confidence 445555 8999999999853
No 229
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.65 E-value=9.7 Score=37.02 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=14.5
Q ss_pred eEEEEeecCCccChhhhcccC
Q psy13078 284 KKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl~ 304 (325)
-..+. .|+|||||.||-..
T Consensus 52 ~vLL~--GppGtGKTtlAr~i 70 (447)
T 3pvs_A 52 SMILW--GPPGTGKTTLAEVI 70 (447)
T ss_dssp EEEEE--CSTTSSHHHHHHHH
T ss_pred EEEEE--CCCCCcHHHHHHHH
Confidence 34555 79999999998653
No 230
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=35.43 E-value=9.9 Score=32.91 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=14.3
Q ss_pred ceEEEEeecCCccChhhhcc
Q psy13078 283 QKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAM 302 (325)
.-.++. .|+|||||.||-
T Consensus 30 ~~vll~--G~~GtGKt~la~ 47 (265)
T 2bjv_A 30 KPVLII--GERGTGKELIAS 47 (265)
T ss_dssp SCEEEE--CCTTSCHHHHHH
T ss_pred CCEEEE--CCCCCcHHHHHH
Confidence 456666 799999999984
No 231
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=35.31 E-value=18 Score=32.97 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=13.6
Q ss_pred CceEEEEeecCCccChhhhc
Q psy13078 282 GQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlA 301 (325)
|+..-+. -|||||||+|.
T Consensus 165 G~i~~l~--G~sG~GKSTLl 182 (302)
T 2yv5_A 165 GFICILA--GPSGVGKSSIL 182 (302)
T ss_dssp TCEEEEE--CSTTSSHHHHH
T ss_pred CcEEEEE--CCCCCCHHHHH
Confidence 5555555 69999999974
No 232
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=34.95 E-value=10 Score=34.59 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=12.3
Q ss_pred eEEEEeecCCccChhhhc
Q psy13078 284 KKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlA 301 (325)
.+-|. -|+|||||||.
T Consensus 26 ~~~i~--G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIV--GPNGSGKSNII 41 (322)
T ss_dssp EEEEE--CCTTTCSTHHH
T ss_pred cEEEE--CCCCCcHHHHH
Confidence 44444 79999999984
No 233
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=34.92 E-value=42 Score=31.48 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=65.1
Q ss_pred cCHHHHHHHHHHH----hhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEEEc
Q psy13078 29 ISPKLKSFIDNCV----ELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 29 l~~~v~~~V~e~a----~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
-.+++++.|++.. .+-.|+.|+++.|+.+=.+.+.+.+++.|..+-+. .|++. .+.++...-.++-.
T Consensus 119 g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~-------~~~~~~~g~~~~~v 191 (448)
T 3aow_A 119 GFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAA-------LQAFNFYEPQYIQI 191 (448)
T ss_dssp CCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHH-------HHHHHTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHH-------HHHHHHcCCEEEEe
Confidence 3567777777766 21168999999999998888888887776433221 22221 12333333333322
Q ss_pred CCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcC-ccccCCCeEEEEecccCCCCCCCC
Q psy13078 103 QEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRF-PGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 103 ~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f-~G~M~GRtMyViPfsmGPigsp~s 161 (325)
+-.+ +-++++++++.+.... ++ =+-|-+|++|-.-.|.|.-++
T Consensus 192 ~~~~---------------~g~d~~~L~~~l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~ 235 (448)
T 3aow_A 192 PLDD---------------EGMKVEILEEKLKELKSQG-KKVKVVYTVPTFQNPAGVTMN 235 (448)
T ss_dssp EEET---------------TEECHHHHHHHHHHHHHTT-CCEEEEEECCSSCTTTCCCCC
T ss_pred ccCC---------------CCCCHHHHHHHHhhhhccC-CCCeEEEECCCCCCCcCCCCC
Confidence 2110 1168898888886210 01 012345788998999998776
No 234
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=34.92 E-value=10 Score=35.30 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=16.2
Q ss_pred CceEEEEeecCCccChhhhcccC
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++-..+. .|+|||||.||-..
T Consensus 148 ~~~vLL~--GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLF--GPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEE--SSTTSCHHHHHHHH
T ss_pred CceEEEE--CCCCCCHHHHHHHH
Confidence 4556666 79999999998643
No 235
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=34.85 E-value=20 Score=28.60 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=15.1
Q ss_pred ceEEEEeecCCccChhhhcc
Q psy13078 283 QKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAM 302 (325)
+..-|+-..++++|||+|..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~ 39 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHH
Confidence 34556667789999999964
No 236
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=34.64 E-value=34 Score=31.33 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=54.5
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCC-CCcCCCCCCCccCCCcc
Q psy13078 44 CQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEK-AETVPDTKPGVKGTLGN 122 (325)
Q Consensus 44 ~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~-~da~p~~~~Gv~~~l~n 122 (325)
+.|+.|++++|+.|=.+.+.+.+.+.|..+-... .+|..+ .+.++.-..+.+-.+-. ++ ++
T Consensus 117 ~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~--~~y~~~---~~~~~~~g~~~~~~~~~~~~-------------~~ 178 (421)
T 3l8a_A 117 VVKEDILFIDGVVPAISIALQAFSEKGDAVLINS--PVYYPF---ARTIRLNDHRLVENSLQIIN-------------GR 178 (421)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEE--SCCHHH---HHHHHHTTEEEEEEECEEET-------------TE
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECC--CCcHHH---HHHHHHCCCEEEeccccccC-------------CC
Confidence 5799999999999988888888877664332211 111111 12333333333322211 01 13
Q ss_pred c-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 123 W-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 123 w-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
| +|.+++++.+.+ ..-.+.++.-.-+|.|..++
T Consensus 179 ~~~d~~~le~~i~~------~~~~~vil~~p~nptG~~~~ 212 (421)
T 3l8a_A 179 FEIDFEQLEKDIID------NNVKIYLLCSPHNPGGRVWD 212 (421)
T ss_dssp EECCHHHHHHHHHH------TTEEEEEEESSBTTTTBCCC
T ss_pred eeeCHHHHHHHhhc------cCCeEEEECCCCCCCCCcCC
Confidence 3 689999998874 12245566777888887654
No 237
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=34.62 E-value=54 Score=28.74 Aligned_cols=36 Identities=8% Similarity=0.227 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHH
Q psy13078 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMV 67 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~ 67 (325)
+++++++++... +.|+.|+++.|+.+=...+...+.
T Consensus 47 ~~l~~~la~~~g-~~~~~v~~~~g~t~a~~~~~~~~~ 82 (384)
T 1eg5_A 47 EKAREKVAKVLG-VSPSEIFFTSCATESINWILKTVA 82 (384)
T ss_dssp HHHHHHHHHHHT-SCGGGEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCeEEEECCHHHHHHHHHHhhh
Confidence 566777776665 568899999999888888887776
No 238
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.41 E-value=20 Score=35.23 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=17.3
Q ss_pred CCCCceEEEEeecCCccChhhhc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
=+.|+..-++-..|||||||+|.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLl 59 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLM 59 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHH
Confidence 35687755666799999999985
No 239
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=34.23 E-value=18 Score=29.54 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=12.3
Q ss_pred EEEeecCCccChhhhc
Q psy13078 286 YIAAAFPSACGKTNLA 301 (325)
Q Consensus 286 yiaaAFPSaCGKTnlA 301 (325)
-|+-..++++|||+|.
T Consensus 25 ki~~vG~~~vGKSsli 40 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLL 40 (190)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455569999999985
No 240
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=34.21 E-value=18 Score=36.78 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=16.5
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
++|+.+=+. -|||||||+|.
T Consensus 101 ~~Gei~~Lv--GpNGaGKSTLL 120 (608)
T 3j16_B 101 RPGQVLGLV--GTNGIGKSTAL 120 (608)
T ss_dssp CTTSEEEEE--CCTTSSHHHHH
T ss_pred CCCCEEEEE--CCCCChHHHHH
Confidence 358887777 79999999984
No 241
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=33.76 E-value=18 Score=34.32 Aligned_cols=19 Identities=47% Similarity=0.511 Sum_probs=14.2
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+.| ...|. -|+|||||||.
T Consensus 25 ~~g-~~~i~--G~nG~GKttll 43 (359)
T 2o5v_A 25 PEG-VTGIY--GENGAGKTNLL 43 (359)
T ss_dssp CSE-EEEEE--CCTTSSHHHHH
T ss_pred cCC-eEEEE--CCCCCChhHHH
Confidence 445 55555 79999999984
No 242
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=33.70 E-value=8.3 Score=33.44 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=20.4
Q ss_pred eecCCccChhhhcccCC---CCCCceEEEeccccc
Q psy13078 289 AAFPSACGKTNLAMLNP---TLPGYKVECVGVPYK 320 (325)
Q Consensus 289 aAFPSaCGKTnlAMl~p---~~pGwkv~~VGDDIA 320 (325)
+..=.|+|||++|.... . .|.||-.|-=|..
T Consensus 33 ~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 33 ASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred EeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 34455899998876221 1 6899988865543
No 243
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=33.61 E-value=22 Score=28.49 Aligned_cols=21 Identities=29% Similarity=0.135 Sum_probs=15.5
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
..+..-|+-.-++++|||+|.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli 37 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLT 37 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 345566777789999999984
No 244
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=33.48 E-value=12 Score=30.61 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=11.3
Q ss_pred eEEEEeecCCccChhhh
Q psy13078 284 KKYIAAAFPSACGKTNL 300 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnl 300 (325)
..-|. -|.|+||||+
T Consensus 25 ~~~I~--G~NGsGKSti 39 (149)
T 1f2t_A 25 INLII--GQNGSGKSSL 39 (149)
T ss_dssp EEEEE--CCTTSSHHHH
T ss_pred eEEEE--CCCCCCHHHH
Confidence 34444 5999999997
No 245
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=33.39 E-value=17 Score=29.09 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=14.4
Q ss_pred ceEEEEeecCCccChhhhc
Q psy13078 283 QKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlA 301 (325)
+..-|+-..++++|||+|.
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3445666679999999985
No 246
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=33.31 E-value=14 Score=33.03 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=0.0
Q ss_pred HhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhc
Q psy13078 258 GSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 258 aS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+..++-+.+.+.+++. +-.+|+-.-|+|||||+++
T Consensus 10 ~~~~~~~~~~~~~~~~---------~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 10 GVDLGTENLYFQSNAM---------NAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp -------------------------CCCEEEEEESTTSCHHHHH
T ss_pred cccccccccccccCCC---------CCeEEEEECCCCCCHHHHH
No 247
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=33.30 E-value=14 Score=40.23 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=19.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|+=|.++-+=|| -+||+||++||+
T Consensus 41 v~iP~~~lvv~t--G~SGSGKSSLaf 64 (993)
T 2ygr_A 41 LDLPRDALIVFT--GLSGSGKSSLAF 64 (993)
T ss_dssp EEEESSSEEEEE--ESTTSSHHHHHT
T ss_pred eeccCCCEEEEE--CCCCCcHHHHHH
Confidence 455877777777 799999999998
No 248
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.08 E-value=19 Score=37.50 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=18.3
Q ss_pred ceeCCCCceEEEEeecCCccChhhhcc
Q psy13078 276 GITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 276 git~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|+++|+.-...+.-..|+|||||.||-
T Consensus 580 g~~~~~~p~~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 580 GLKDPNRPIGSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp GCSCSSSCSEEEEEBSCSSSSHHHHHH
T ss_pred ccCCCCCCceEEEEECCCCCCHHHHHH
Confidence 566775433334444899999999984
No 249
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=33.06 E-value=18 Score=39.89 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=28.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=|.|+++-+. -|||||||+|+-+. ++..| +|.+=|-||.
T Consensus 411 l~i~~G~~~~iv--G~sGsGKSTl~~ll~g~~~~~~G-~i~i~g~~i~ 455 (1284)
T 3g5u_A 411 LKVKSGQTVALV--GNSGCGKSTTVQLMQRLYDPLDG-MVSIDGQDIR 455 (1284)
T ss_dssp EEECTTCEEEEE--CCSSSSHHHHHHHTTTSSCCSEE-EEEETTEEGG
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEHH
Confidence 455779998888 89999999997654 23334 4555565553
No 250
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=33.06 E-value=19 Score=36.52 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=19.4
Q ss_pred hceeC-CCCceEEEEeecCCccChhhhcc
Q psy13078 275 LGITN-PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 275 lgit~-P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
-+|+. +.|+.+-+. -|||||||+|.=
T Consensus 109 ~~vs~i~~Ge~~~Li--G~NGsGKSTLlk 135 (607)
T 3bk7_A 109 YRLPIVKDGMVVGIV--GPNGTGKTTAVK 135 (607)
T ss_dssp ECCCCCCTTSEEEEE--CCTTSSHHHHHH
T ss_pred CCCCCCCCCCEEEEE--CCCCChHHHHHH
Confidence 34543 468888777 799999999863
No 251
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=33.02 E-value=19 Score=36.62 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=13.9
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
|+..=+. -|||||||+|+=
T Consensus 378 GEiv~ii--G~NGsGKSTLlk 396 (608)
T 3j16_B 378 SEILVMM--GENGTGKTTLIK 396 (608)
T ss_dssp TCEEEEE--SCTTSSHHHHHH
T ss_pred ceEEEEE--CCCCCcHHHHHH
Confidence 4554444 899999999863
No 252
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=32.94 E-value=17 Score=32.85 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=15.3
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
++..+|+--.|+|+|||.||-
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHH
Confidence 445666225899999999975
No 253
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=32.94 E-value=11 Score=33.61 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=12.8
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
..|. .|+|||||.||-
T Consensus 41 ~ll~--G~~G~GKT~la~ 56 (373)
T 1jr3_A 41 YLFS--GTRGVGKTSIAR 56 (373)
T ss_dssp EEEE--SCTTSSHHHHHH
T ss_pred EEEE--CCCCCCHHHHHH
Confidence 4455 799999999975
No 254
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=32.76 E-value=16 Score=28.91 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=14.0
Q ss_pred ceEEEEeecCCccChhhhc
Q psy13078 283 QKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlA 301 (325)
...-|+-..++++|||+|.
T Consensus 22 ~~~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3344555678999999986
No 255
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=32.60 E-value=20 Score=35.72 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=13.5
Q ss_pred CCceEEEEeecCCccChhhh
Q psy13078 281 EGQKKYIAAAFPSACGKTNL 300 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnl 300 (325)
.|+..-|+ -|+|||||+|
T Consensus 259 ~g~~i~I~--GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVV--GETASGKTTT 276 (511)
T ss_dssp TTCCEEEE--ESTTSSHHHH
T ss_pred CCCEEEEE--CCCCCCHHHH
Confidence 46554444 7999999998
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=32.60 E-value=17 Score=37.90 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=15.8
Q ss_pred CceEEEEeecCCccChhhhcccC
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
++...+. -|||||||.||-..
T Consensus 238 ~~~vLL~--Gp~GtGKTtLaral 258 (806)
T 1ypw_A 238 PRGILLY--GPPGTGKTLIARAV 258 (806)
T ss_dssp CCEEEEC--SCTTSSHHHHHHHH
T ss_pred CCeEEEE--CcCCCCHHHHHHHH
Confidence 4455555 89999999998653
No 257
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=32.54 E-value=18 Score=35.15 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=22.3
Q ss_pred CCCceEEEEeecCCccChhhhcccCC---CCCCceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG 316 (325)
+.|+.+-|+ .++|+|||.||+-.- ...|++|=.++
T Consensus 195 ~~G~liiIa--G~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 195 KRRNFVLIA--ARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSSCEEEEE--ECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEE--eCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 347666666 578999999987321 12366665554
No 258
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=32.53 E-value=12 Score=32.53 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=12.9
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
..+. .|+|||||.+|-
T Consensus 41 ~ll~--G~~G~GKt~la~ 56 (319)
T 2chq_A 41 LLFS--GPPGTGKTATAI 56 (319)
T ss_dssp EEEE--SSSSSSHHHHHH
T ss_pred EEEE--CcCCcCHHHHHH
Confidence 4555 799999999985
No 259
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=32.22 E-value=16 Score=39.88 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.0
Q ss_pred eeCCCCceEEEEeecCCccChhhhcc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|+=|.++-+=|| -+||+||++||+
T Consensus 39 v~iP~~~lvv~t--G~SGSGKSSLaf 62 (972)
T 2r6f_A 39 VEIPRGKLVVLT--GLSGSGKSSLAF 62 (972)
T ss_dssp EEEETTSEEEEE--ESTTSSHHHHHT
T ss_pred eeccCCcEEEEE--CCCCCCHHHHHH
Confidence 555878777777 799999999998
No 260
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=32.05 E-value=17 Score=36.56 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=17.7
Q ss_pred CCceEEEEeecCCccChhhhcccC
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
+|...+++ -+||||||++|-+.
T Consensus 394 ~~~~I~l~--GlsGsGKSTIa~~L 415 (511)
T 1g8f_A 394 QGFSIVLG--NSLTVSREQLSIAL 415 (511)
T ss_dssp CCEEEEEC--TTCCSCHHHHHHHH
T ss_pred cceEEEec--ccCCCCHHHHHHHH
Confidence 56778887 78999999998643
No 261
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=31.05 E-value=15 Score=34.50 Aligned_cols=21 Identities=33% Similarity=0.211 Sum_probs=16.6
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++|++.=+. -|||||||+|..
T Consensus 69 ~~Gq~~gIi--G~nGaGKTTLl~ 89 (347)
T 2obl_A 69 GIGQRIGIF--AGSGVGKSTLLG 89 (347)
T ss_dssp ETTCEEEEE--ECTTSSHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 358777666 699999999865
No 262
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=31.04 E-value=9.6 Score=34.13 Aligned_cols=18 Identities=11% Similarity=-0.156 Sum_probs=13.2
Q ss_pred eEEEEeecCCccChhhhccc
Q psy13078 284 KKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl 303 (325)
-..+. .|+|||||.||-.
T Consensus 48 ~vll~--G~pGtGKT~la~~ 65 (331)
T 2r44_A 48 HILLE--GVPGLAKTLSVNT 65 (331)
T ss_dssp CEEEE--SCCCHHHHHHHHH
T ss_pred eEEEE--CCCCCcHHHHHHH
Confidence 34444 6999999999753
No 263
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=30.98 E-value=1.5e+02 Score=26.06 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEEEcCCCCC
Q psy13078 30 SPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFICTQEKAE 107 (325)
Q Consensus 30 ~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~t~~~~d 107 (325)
.+++++.+++....-.|+.|+++.|+.+=.+.+.+.+++.|..+-+. .|++ ..+.++.-..+.+..+-..+
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~-------~~~~~~~~g~~~~~v~~~~~ 141 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVM-------YAMSAQFAGLEFVGVPLRAD 141 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCC-------SCHHHHTTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHH-------HHHHHHHcCCeEEEecCCCC
Confidence 46788888877765578999999999988888877777766433221 2222 22334433333332221111
Q ss_pred cCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCC
Q psy13078 108 TVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPL 160 (325)
Q Consensus 108 a~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~ 160 (325)
--++++++++.+++. +-| +.++...-.|.|..+
T Consensus 142 --------------~~~d~~~l~~~l~~~-----~~~-~v~~~~~~nptG~~~ 174 (367)
T 3euc_A 142 --------------FTLDRGAMLAAMAEH-----QPA-IVYLAYPNNPTGNLF 174 (367)
T ss_dssp --------------SCCCHHHHHHHHHHH-----CCS-EEEEESSCTTTCCCC
T ss_pred --------------CCCCHHHHHHHhhcc-----CCC-EEEEcCCCCCCCCCC
Confidence 236889999988773 223 334445567888765
No 264
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=30.80 E-value=85 Score=27.89 Aligned_cols=105 Identities=12% Similarity=0.234 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHH----hh-cCCCe-EEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEE
Q psy13078 30 SPKLKSFIDNCV----EL-CQPSD-VHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFIC 101 (325)
Q Consensus 30 ~~~v~~~V~e~a----~L-~~P~~-I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~ 101 (325)
.+++++.+++.. .+ +.|+. |+++.|+.+=.+.+...+.+.|..+-+ +.|++. .+.++.-....+.
T Consensus 65 ~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~-------~~~~~~~g~~~~~ 137 (389)
T 1gd9_A 65 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSY-------APAVILAGGKPVE 137 (389)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTH-------HHHHHHHTCEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhH-------HHHHHHCCCEEEE
Confidence 456666666655 33 67899 999999888777776666555532222 223321 1334433333332
Q ss_pred cCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 102 TQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 102 t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
.+-..+ +.| ++++++++.+.+ .-.+.+++..-.|.|.-++
T Consensus 138 v~~~~~-------------~~~~~d~~~l~~~l~~-------~~~~v~~~~~~nptG~~~~ 178 (389)
T 1gd9_A 138 VPTYEE-------------DEFRLNVDELKKYVTD-------KTRALIINSPCNPTGAVLT 178 (389)
T ss_dssp EECCGG-------------GTTCCCHHHHHHHCCT-------TEEEEEEESSCTTTCCCCC
T ss_pred eccCCc-------------cCCCCCHHHHHHhcCc-------CceEEEEECCCCCCCcCCC
Confidence 221111 123 588888877754 1235566777778887664
No 265
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=30.65 E-value=20 Score=28.66 Aligned_cols=19 Identities=32% Similarity=0.184 Sum_probs=14.2
Q ss_pred ceEEEEeecCCccChhhhc
Q psy13078 283 QKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlA 301 (325)
+..-|+-..++++|||+|.
T Consensus 22 ~~~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3445566679999999985
No 266
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=30.60 E-value=20 Score=31.12 Aligned_cols=13 Identities=46% Similarity=0.833 Sum_probs=11.2
Q ss_pred cCCccChhhhccc
Q psy13078 291 FPSACGKTNLAML 303 (325)
Q Consensus 291 FPSaCGKTnlAMl 303 (325)
-|.|+|||.+|++
T Consensus 115 ~~tG~GKT~~a~~ 127 (237)
T 2fz4_A 115 LPTGSGKTHVAMA 127 (237)
T ss_dssp ESSSTTHHHHHHH
T ss_pred eCCCCCHHHHHHH
Confidence 4999999999864
No 267
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=30.53 E-value=97 Score=27.04 Aligned_cols=104 Identities=11% Similarity=0.146 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEEEcCCCCCc
Q psy13078 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFICTQEKAET 108 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~t~~~~da 108 (325)
+++++.+++... +.|+.|+++.|+.+=...+...+.+.|..+-+. .|++. .+.++....+.+-.+-..+
T Consensus 54 ~~l~~~la~~~~-~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~- 124 (354)
T 3ly1_A 54 LMLGNKLAAHHQ-VEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDG-------EHFAKIAGMKVTKVKMLDN- 124 (354)
T ss_dssp HHHHHHHHHHTT-SCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHH-------HHHHHHTTCEEEEECCCTT-
T ss_pred HHHHHHHHHHhC-CChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHH-------HHHHHHcCCEEEEecCCCC-
Confidence 455555555554 469999999999998888888877776433221 22221 2334433333333222111
Q ss_pred CCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 109 VPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 109 ~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
.-++++++++.+++. ..-.+.++...-.|.|..++
T Consensus 125 -------------~~~d~~~l~~~l~~~-----~~~~~v~l~~p~nptG~~~~ 159 (354)
T 3ly1_A 125 -------------WAFDIEGLKAAVAAY-----SGPSIVYLVNPNNPTGTITP 159 (354)
T ss_dssp -------------SCCCHHHHHHHHHTC-----SSCEEEEEESSCTTTCCCCC
T ss_pred -------------CCCCHHHHHHHhccC-----CCCCEEEEeCCCCCcCCCcC
Confidence 235788888888741 11234445566778887654
No 268
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=30.51 E-value=17 Score=35.02 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.| .+=| +-|++||||+||+
T Consensus 27 ~~G-iteI--~G~pGsGKTtL~L 46 (333)
T 3io5_A 27 QSG-LLIL--AGPSKSFKSNFGL 46 (333)
T ss_dssp CSE-EEEE--EESSSSSHHHHHH
T ss_pred cCC-eEEE--ECCCCCCHHHHHH
Confidence 557 5444 4699999999976
No 269
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=30.04 E-value=64 Score=28.40 Aligned_cols=118 Identities=16% Similarity=0.063 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCcCC
Q psy13078 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVP 110 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p 110 (325)
+++++.+++... +.|+.|++++|+.+=...+...+++.|..+-+.. | +|. ...+.++.-....+..+-..
T Consensus 68 ~~lr~~la~~~~-~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~-~-~~~---~~~~~~~~~g~~~~~v~~~~---- 137 (365)
T 3get_A 68 IELKSTLAQKYK-VQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAG-V-TFA---MYEIYAKQCGAKCYKTQSIT---- 137 (365)
T ss_dssp HHHHHHHHHHHT-CCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECS-S-CCT---HHHHHHHHHTCEEEECSSSS----
T ss_pred HHHHHHHHHHhC-CCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeC-C-ChH---HHHHHHHHcCCEEEEEecCC----
Confidence 678888777765 4799999999999988888888877774433321 1 111 11234444444443332200
Q ss_pred CCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc------------ceeeccCchhHHh
Q psy13078 111 DTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK------------IGVEITDSPYVVG 175 (325)
Q Consensus 111 ~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~------------~GVqlTDS~YVv~ 175 (325)
.+|++++++++.+++ .-.+.++...-.|.|..++. -..=+-|..|.-.
T Consensus 138 ----------~~~~d~~~l~~~l~~-------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~ 197 (365)
T 3get_A 138 ----------HNLDEFKKLYETHKD-------EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEF 197 (365)
T ss_dssp ----------CCHHHHHHHHHHTTT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHH
T ss_pred ----------CCCCCHHHHHHHhCC-------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHH
Confidence 123677777777652 22345555566788876542 1345677777643
No 270
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=29.88 E-value=20 Score=36.42 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.0
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.|+..-+. -|+|||||+|.=
T Consensus 380 ~~Gei~~i~--G~NGsGKSTLlk 400 (607)
T 3bk7_A 380 RKGEVIGIV--GPNGIGKTTFVK 400 (607)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468877666 799999999864
No 271
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=29.65 E-value=16 Score=31.78 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCccccCCCeEEEEecc
Q psy13078 125 SPQDYEEAIMQRFPGCMKGRTMYVIPFS 152 (325)
Q Consensus 125 ~~~~~~~~l~~~f~G~M~GRtMyViPfs 152 (325)
+.+++.+.|.+.++|.||||.+-+-|+-
T Consensus 126 ~k~~l~~~ie~~~r~a~~g~~~v~~p~~ 153 (160)
T 2av4_A 126 NKQEFIDIVETIFRGARKGRGLVISPKD 153 (160)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEECSSC
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 4789999999999999999999998864
No 272
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=29.55 E-value=25 Score=35.05 Aligned_cols=38 Identities=8% Similarity=-0.120 Sum_probs=21.9
Q ss_pred CCCCceEEEEeecCCccChhhhcc----cCCCCCCceEEEeccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAM----LNPTLPGYKVECVGVPYK 320 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAM----l~p~~pGwkv~~VGDDIA 320 (325)
=++ +.+-+. -|||||||+|.- +.++..|- |.+-|.|+.
T Consensus 27 i~~-e~~~li--G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~~~ 68 (483)
T 3euj_A 27 FDE-LVTTLS--GGNGAGKSTTMAGFVTALIPDLTL-LNFRNTTEA 68 (483)
T ss_dssp CCS-SEEEEE--CCTTSSHHHHHHHHHHHHCCCTTT-CCCCCTTSC
T ss_pred Ecc-ceEEEE--CCCCCcHHHHHHHHhcCCCCCCCE-EEECCEEcc
Confidence 344 444444 899999999843 22444453 444455543
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=29.38 E-value=24 Score=34.64 Aligned_cols=36 Identities=28% Similarity=0.141 Sum_probs=24.8
Q ss_pred eEEEEeecCCccChhhhcccCC---CCCCceEEEecccc
Q psy13078 284 KKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGVPY 319 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VGDDI 319 (325)
...|.-+-|+|+|||+|+--.- .-.|.||-+|+-|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3455555799999999854211 01599999988775
No 274
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=29.21 E-value=40 Score=26.82 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCC----CCCcEEeccC
Q psy13078 30 SPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPK----YENCWLARTN 87 (325)
Q Consensus 30 ~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~----~~n~~l~rsd 87 (325)
-.++-+|+-+..+-+ -|.+|...+-+.|++.|-+.+... .++||+.|.|
T Consensus 53 G~dlVdWL~~~~~~~---------~~r~eAv~lg~~Ll~~G~I~hv~~~~~F~D~~~y~f~~ 105 (105)
T 1fsh_A 53 GADVVDWLYTHVEGF---------KERREARKYASSMLKHGFLRHTVNKITFSEQCYYVFGD 105 (105)
T ss_dssp HHHHHHHHHHHCCCC---------SSHHHHHHHHHHHHHTTTEECSSSSCCCCSSSCCEECC
T ss_pred cHHHHHHHHHhCcCC---------CCHHHHHHHHHHHHHCCcEEEcCCCCcccCCCeeecCC
Confidence 356777777654211 289999999999999999999842 3566655543
No 275
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=29.09 E-value=25 Score=33.60 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=14.3
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
.|+..-+. -|||||||+|.
T Consensus 214 ~G~~~~lv--G~sG~GKSTLl 232 (358)
T 2rcn_A 214 TGRISIFA--GQSGVGKSSLL 232 (358)
T ss_dssp TTSEEEEE--CCTTSSHHHHH
T ss_pred CCCEEEEE--CCCCccHHHHH
Confidence 36655554 89999999984
No 276
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=28.99 E-value=38 Score=30.50 Aligned_cols=105 Identities=18% Similarity=0.339 Sum_probs=62.9
Q ss_pred cCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEEcCCCC
Q psy13078 29 ISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICTQEKA 106 (325)
Q Consensus 29 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t~~~~ 106 (325)
..+++++.+++... +.|+.|+++.|+.+=.+.+.+.+.+.|..+-+ +.|++. .+.++.-....+-.+-.+
T Consensus 75 ~~~~l~~~la~~~g-~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~-------~~~~~~~g~~~~~~~~~~ 146 (397)
T 2zyj_A 75 GYAPLRAFVAEWIG-VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGA-------IQAFRLQGPRFLTVPAGE 146 (397)
T ss_dssp CCHHHHHHHHHHHT-SCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHH-------HHHHHTTCCEEEEEEEET
T ss_pred CCHHHHHHHHHHhC-CChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHH-------HHHHHHcCCEEEecCcCC
Confidence 34667777777665 78999999999988888887777666632222 122221 123333222222211110
Q ss_pred CcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 107 ETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 107 da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
+-++++++++.+++. +-|-.||+|-.-.|.|..++
T Consensus 147 ---------------~~~d~~~l~~~l~~~-----~~~~v~~~~~~~nptG~~~~ 181 (397)
T 2zyj_A 147 ---------------EGPDLDALEEVLKRE-----RPRFLYLIPSFQNPTGGLTP 181 (397)
T ss_dssp ---------------TEECHHHHHHHHHHC-----CCSCEEECCBSCTTTCCBCC
T ss_pred ---------------CCCCHHHHHHHHhhc-----CCeEEEECCCCcCCCCCcCC
Confidence 116888998888762 22445778888888887665
No 277
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=28.99 E-value=86 Score=25.57 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEc-CCHHHHHHHHHHHHhcCc
Q psy13078 32 KLKSFIDNCVELCQPSDVHICD-GSEREYKELIDLMVKDKT 71 (325)
Q Consensus 32 ~v~~~V~e~a~L~~P~~I~icd-GS~eE~~~l~~~l~~~G~ 71 (325)
...++++++.++++|..++++. -+.++.+.+.+.+.+.|-
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 120 MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 5778999999999999988877 566778888888888884
No 278
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=28.67 E-value=23 Score=37.59 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=17.3
Q ss_pred EEeccCCCcccccccceEEEcC
Q psy13078 82 WLARTNPADVARVESKTFICTQ 103 (325)
Q Consensus 82 ~l~rsdp~DvARve~rTfI~t~ 103 (325)
.+..++|.+...|...|.|...
T Consensus 164 ~V~~~~P~~~~~v~~~T~i~~~ 185 (806)
T 3cf2_A 164 KVVETDPSPYCIVAPDTVIHCE 185 (806)
T ss_dssp EEEEESSSSEEECCTTSBCCBC
T ss_pred EEEEEeCCCCeEECCCcEEEEe
Confidence 4667889998888888888654
No 279
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=28.64 E-value=21 Score=31.18 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=13.0
Q ss_pred eEEEEeecCCccChhhhcc
Q psy13078 284 KKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAM 302 (325)
...|. .|+|+|||.|+-
T Consensus 32 ~v~i~--G~~G~GKT~L~~ 48 (357)
T 2fna_A 32 ITLVL--GLRRTGKSSIIK 48 (357)
T ss_dssp EEEEE--ESTTSSHHHHHH
T ss_pred cEEEE--CCCCCCHHHHHH
Confidence 44444 799999999964
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=28.51 E-value=20 Score=41.24 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.1
Q ss_pred CCCceEEEEeecCCccChhhhcc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAM 302 (325)
|.|+.+=+. -|.+||||-||+
T Consensus 1080 p~g~~~l~~--G~~g~GKT~la~ 1100 (1706)
T 3cmw_A 1080 PMGRIVEIY--GPESSGKTTLTL 1100 (1706)
T ss_dssp ETTSEEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--cCCCCChHHHHH
Confidence 789998888 799999999998
No 281
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=28.40 E-value=18 Score=35.03 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=23.9
Q ss_pred CCCceEEEEeecCCccChhhhcccC---CCCC-CceEEEec
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLAMLN---PTLP-GYKVECVG 316 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlAMl~---p~~p-Gwkv~~VG 316 (325)
+.|+.+-|+ -|+|+|||.||+-. -... |++|-.++
T Consensus 240 ~~G~l~li~--G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVT--SGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEE--ESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEe--ecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 457776665 68899999998732 1234 88887664
No 282
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.25 E-value=27 Score=35.64 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=17.8
Q ss_pred ceeCCCCc--eEEEEeecCCccChhhhccc
Q psy13078 276 GITNPEGQ--KKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 276 git~P~G~--~~yiaaAFPSaCGKTnlAMl 303 (325)
|+.+|..- ...+. .|+|||||.||-.
T Consensus 513 ~~~~~~~p~~~~Ll~--Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 513 GLKDPKRPIGSFIFL--GPTGVGKTELARA 540 (758)
T ss_dssp TCSCTTSCSEEEEEE--SCTTSSHHHHHHH
T ss_pred ccCCCCCCceEEEEE--CCCCCCHHHHHHH
Confidence 45566433 24555 8999999999853
No 283
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=27.98 E-value=19 Score=32.04 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=13.8
Q ss_pred ceEEEEeecCCccChhhhccc
Q psy13078 283 QKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlAMl 303 (325)
+-.+|+---|+|||||+++-+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~ 44 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQW 44 (227)
T ss_dssp CCCEEEEECCC---CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346788889999999998753
No 284
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=27.92 E-value=27 Score=34.84 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=18.7
Q ss_pred ceeCC-CCceEEEEeecCCccChhhhcc
Q psy13078 276 GITNP-EGQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 276 git~P-~G~~~yiaaAFPSaCGKTnlAM 302 (325)
++.-| +|+.+=+. -|+|||||+|.=
T Consensus 18 ~l~~~~~Gei~gLi--GpNGaGKSTLlk 43 (538)
T 3ozx_A 18 GLPTPKNNTILGVL--GKNGVGKTTVLK 43 (538)
T ss_dssp CCCCCCTTEEEEEE--CCTTSSHHHHHH
T ss_pred CCCCCCCCCEEEEE--CCCCCcHHHHHH
Confidence 45555 48777677 799999999853
No 285
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=27.50 E-value=23 Score=30.80 Aligned_cols=13 Identities=46% Similarity=0.577 Sum_probs=11.2
Q ss_pred ecCCccChhhhcc
Q psy13078 290 AFPSACGKTNLAM 302 (325)
Q Consensus 290 AFPSaCGKTnlAM 302 (325)
..|+|+|||.+|-
T Consensus 52 ~G~~G~GKT~la~ 64 (327)
T 1iqp_A 52 AGPPGVGKTTAAL 64 (327)
T ss_dssp ESCTTSSHHHHHH
T ss_pred ECcCCCCHHHHHH
Confidence 4799999999985
No 286
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=27.37 E-value=1e+02 Score=27.14 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHhh-----cCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCC
Q psy13078 30 SPKLKSFIDNCVEL-----CQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQE 104 (325)
Q Consensus 30 ~~~v~~~V~e~a~L-----~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~ 104 (325)
.+++++-+++...- +.|+.|++++|+.+=...+.+.+++.|..+-... | +|.. ..+.++.-..+.+-.+-
T Consensus 64 ~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~-~-~~~~---~~~~~~~~g~~~~~~~~ 138 (391)
T 3dzz_A 64 PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQE-P-VYNM---FYSVIEGNGRRVISSDL 138 (391)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECS-S-CCHH---HHHHHHHTTCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECC-C-CcHH---HHHHHHHcCCEEEEeee
Confidence 44555545444322 6799999999988888888887776664332211 1 1111 12334433333333221
Q ss_pred CCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 105 KAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 105 ~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
..+ -++| ++++++++.+++. .-.+.++.-.-.|.|..++
T Consensus 139 ~~~------------~~~~~~d~~~l~~~l~~~------~~~~v~i~~p~nptG~~~~ 178 (391)
T 3dzz_A 139 IYE------------NSKYSVNWADLEEKLATP------SVRMMVFCNPHNPIGYAWS 178 (391)
T ss_dssp EEE------------TTEEECCHHHHHHHHTST------TEEEEEEESSBTTTTBCCC
T ss_pred eec------------CCceeecHHHHHHHHhcc------CceEEEEECCCCCCCcccC
Confidence 100 0244 7889998888631 1234455555677776653
No 287
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=27.34 E-value=23 Score=28.30 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=14.7
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
..+..-|+-.-++++|||+|.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli 38 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTIL 38 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHH
T ss_pred CCceeEEEEECCCCCCHHHHH
Confidence 345566777788999999985
No 288
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.24 E-value=16 Score=38.17 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=14.7
Q ss_pred eccCCCcccccccceEEEcC
Q psy13078 84 ARTNPADVARVESKTFICTQ 103 (325)
Q Consensus 84 ~rsdp~DvARve~rTfI~t~ 103 (325)
.-++|.....+..+|.+-..
T Consensus 166 ~~~~p~~~~~v~~~t~~~~~ 185 (806)
T 1ypw_A 166 VETDPSPYCIVAPDTVIHCE 185 (806)
T ss_dssp EEETTTTCCBCCSSSEEEEC
T ss_pred EeccCCCCceecCCeEEEec
Confidence 34678888888888877654
No 289
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=27.23 E-value=14 Score=32.28 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=19.4
Q ss_pred cCCccChhhhcccCCC---CCCceEEEeccccc
Q psy13078 291 FPSACGKTNLAMLNPT---LPGYKVECVGVPYK 320 (325)
Q Consensus 291 FPSaCGKTnlAMl~p~---~pGwkv~~VGDDIA 320 (325)
.-.|+|||++|.-... .-|.||-.|-=|.-
T Consensus 26 ~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 26 GKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3448999988764322 25888877755543
No 290
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=27.14 E-value=17 Score=33.40 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=12.5
Q ss_pred eEEEEeecCCccChhhhcc
Q psy13078 284 KKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAM 302 (325)
..-|. -|.|+||||+.-
T Consensus 25 ~~~i~--G~NGsGKS~lle 41 (339)
T 3qkt_A 25 INLII--GQNGSGKSSLLD 41 (339)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred eEEEE--CCCCCCHHHHHH
Confidence 34444 699999999954
No 291
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=27.11 E-value=26 Score=33.17 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=21.5
Q ss_pred CCceEEEEeecCCccChhhhcccCC---CCCCceEEEec
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVG 316 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VG 316 (325)
.|+.+-|+ -++|+|||.||+-.- ...|.+|-.++
T Consensus 45 ~G~LiiIa--G~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 45 KGSLVIIG--ARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp TTCEEEEE--ECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEE--eCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47666555 678899999986321 12566665543
No 292
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=27.04 E-value=33 Score=28.15 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=15.9
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
-...-|+-..++++|||+|.-
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~ 41 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAG 41 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHH
Confidence 345567778899999999953
No 293
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=26.85 E-value=37 Score=27.48 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=16.2
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
.+..-|+-..++++|||+|.-
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~ 44 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLME 44 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHH
Confidence 445567777899999999853
No 294
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=26.84 E-value=52 Score=29.58 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHh
Q psy13078 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVK 68 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~ 68 (325)
+++++++++... +.|+.|++++|+.+=.+.+...+.+
T Consensus 71 ~~l~~~la~~~~-~~~~~v~~~~ggt~a~~~a~~~l~~ 107 (423)
T 3lvm_A 71 DIARNQIADLVG-ADPREIVFTSGATESDNLAIKGAAN 107 (423)
T ss_dssp HHHHHHHHHHHT-CCGGGEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCeEEEeCChHHHHHHHHHHHHH
Confidence 556666666655 3788999999988877777776664
No 295
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.79 E-value=14 Score=34.38 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=18.5
Q ss_pred cCCccChhhhcccCCC---CCCceEEEeccc
Q psy13078 291 FPSACGKTNLAMLNPT---LPGYKVECVGVP 318 (325)
Q Consensus 291 FPSaCGKTnlAMl~p~---~pGwkv~~VGDD 318 (325)
.-.|+|||++|.-... .-|.||=.|-=|
T Consensus 151 ~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 151 PCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3458999998764321 148888777644
No 296
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=26.72 E-value=16 Score=33.80 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=16.5
Q ss_pred eeCCCCceEEEEeecCCccChhhhc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
++=..| ..-++ -|+|||||||.
T Consensus 56 l~~~~G-~~~lv--G~NGaGKStLl 77 (415)
T 4aby_A 56 LELGGG-FCAFT--GETGAGKSIIV 77 (415)
T ss_dssp EECCSS-EEEEE--ESHHHHHHHHT
T ss_pred EecCCC-cEEEE--CCCCCCHHHHH
Confidence 333457 77777 59999999995
No 297
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=26.33 E-value=1.1e+02 Score=26.49 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCc
Q psy13078 28 AISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKT 71 (325)
Q Consensus 28 ~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~ 71 (325)
.+-+++.+++++... +.|+.|+++.|+.+=.+.+...+.+.|.
T Consensus 49 ~~~~~~~~~l~~~~g-~~~~~v~~~~g~t~a~~~~~~~~~~~gd 91 (359)
T 1svv_A 49 SHCAKAARLIGELLE-RPDADVHFISGGTQTNLIACSLALRPWE 91 (359)
T ss_dssp HHHHHHHHHHHHHHT-CTTSEEEEESCHHHHHHHHHHHHCCTTE
T ss_pred HHHHHHHHHHHHHhC-CCCccEEEeCCchHHHHHHHHHHhCCCC
Confidence 445667777777666 7899999999999888888888877664
No 298
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=26.30 E-value=29 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=13.9
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
.-++--.|.|+|||.||-
T Consensus 148 ~~v~I~G~~GiGKTtLa~ 165 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAA 165 (591)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 345555899999999984
No 299
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=26.01 E-value=76 Score=30.16 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhc
Q psy13078 30 SPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKD 69 (325)
Q Consensus 30 ~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~ 69 (325)
-+++.+||.+. +|..|++.-|.+++.+.+++.+.++
T Consensus 399 ~~~l~~~i~~~----~p~~v~~vHGe~~~~~~~~~~l~~~ 434 (459)
T 2i7t_A 399 YQQTSEFIRAL----KPPHVILVHGEQNEMARLKAALIRE 434 (459)
T ss_dssp HHHHHHHHHHH----CCSEEEEESSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCeEEEeCCCHHHHHHHHHHHHHH
Confidence 46788888774 6999999999999999999877653
No 300
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=25.91 E-value=23 Score=28.82 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=13.9
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
|..++.=|+-..++++|||+|.
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi 37 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQ 37 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHH
Confidence 3344455666678999999993
No 301
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=25.85 E-value=28 Score=28.69 Aligned_cols=34 Identities=15% Similarity=-0.031 Sum_probs=20.0
Q ss_pred EEEeecCCccChhhhcc--cCCCCCCceEEEecccc
Q psy13078 286 YIAAAFPSACGKTNLAM--LNPTLPGYKVECVGVPY 319 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAM--l~p~~pGwkv~~VGDDI 319 (325)
-++-..++++|||+|+- +.-.....+|-+|+.|.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~ 67 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence 34444588999999853 22112236677776554
No 302
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=25.76 E-value=25 Score=31.35 Aligned_cols=40 Identities=8% Similarity=0.264 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHH----hcCc
Q psy13078 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMV----KDKT 71 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~----~~G~ 71 (325)
+++++++++... ++|+.|++++|+.+=.+.+...+. +.|.
T Consensus 66 ~~l~~~la~~~~-~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd 109 (400)
T 3vax_A 66 ERAREYLASTVS-AEPDELIFTSGATESNNIALLGLAPYGERTGR 109 (400)
T ss_dssp HHHHHHHHHHTT-CCGGGEEEESCHHHHHHHHHHTTHHHHHHHTC
T ss_pred HHHHHHHHHHcC-CCCCcEEEeCCHHHHHHHHHHHHHHhhccCCC
Confidence 455556655544 468899999999888888777776 5664
No 303
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.56 E-value=18 Score=34.98 Aligned_cols=12 Identities=33% Similarity=0.291 Sum_probs=10.9
Q ss_pred cCCccChhhhcc
Q psy13078 291 FPSACGKTNLAM 302 (325)
Q Consensus 291 FPSaCGKTnlAM 302 (325)
.|+|||||.+|-
T Consensus 208 G~pG~GKT~la~ 219 (468)
T 3pxg_A 208 GEPGVGKTAIAE 219 (468)
T ss_dssp SCTTTTTHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 899999999975
No 304
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=25.48 E-value=37 Score=30.14 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEEEcCCCCC
Q psy13078 30 SPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFICTQEKAE 107 (325)
Q Consensus 30 ~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~t~~~~d 107 (325)
.+++++-+++...-+.|+.|+++.|+.+=...+...+++.|..+-+. .|++. .+.++.-..+.+..+-..+
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~-------~~~~~~~g~~~~~v~~~~~ 137 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQL-------YDIPKSLGAEVDLWQIEEE 137 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHH-------HHHHHHTTCEEEEEEEEGG
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhH-------HHHHHHcCCEEEEEecccc
Confidence 45666666665444789999999999888888888887777433321 23221 1233333333322211100
Q ss_pred cCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 108 TVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 108 a~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
..| +|++++++.+++ .-.+.++...-.|.|...+
T Consensus 138 -------------~~~~~d~~~l~~~l~~-------~~~~v~~~~~~nptG~~~~ 172 (375)
T 3op7_A 138 -------------NGWLPDLEKLRQLIRP-------TTKMICINNANNPTGAVMD 172 (375)
T ss_dssp -------------GTTEECHHHHHHHCCT-------TCCEEEEESSCTTTCCCCC
T ss_pred -------------CCCCCCHHHHHHhhcc-------CCeEEEEcCCCCCCCCCCC
Confidence 133 588888877753 2235556666688888876
No 305
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.37 E-value=23 Score=30.77 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=12.6
Q ss_pred EEEEeecCCccChhhhcc
Q psy13078 285 KYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 285 ~yiaaAFPSaCGKTnlAM 302 (325)
..+. .|+|+|||.+|-
T Consensus 45 ~ll~--G~~G~GKt~la~ 60 (323)
T 1sxj_B 45 MIIS--GMPGIGKTTSVH 60 (323)
T ss_dssp EEEE--CSTTSSHHHHHH
T ss_pred EEEE--CcCCCCHHHHHH
Confidence 4444 799999999975
No 306
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=25.34 E-value=36 Score=28.90 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=16.1
Q ss_pred CCCCceEEEEeecCCccChhhhc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
.|..+..-|+-..++++|||+|.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStli 46 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATG 46 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHH
Confidence 34556677788889999999985
No 307
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=25.03 E-value=36 Score=31.59 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=26.5
Q ss_pred CCCCceEEEEeecCCccChhhhcc-cCCCC--CCceEEEeccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAM-LNPTL--PGYKVECVGVPYK 320 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAM-l~p~~--pGwkv~~VGDDIA 320 (325)
-++|+. ++-.-|+|||||+|.- |...+ .|-+|.++|.|+.
T Consensus 52 ~~~g~~--v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 52 TGRAIR--VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp CCCSEE--EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred cCCCeE--EEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 344554 4555899999999743 22111 3789999998874
No 308
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=24.98 E-value=30 Score=29.70 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=15.4
Q ss_pred CCCCceEEEEeecCCccChhhhc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+|..+..-|+-..++++|||+|.
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAG 39 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHH
Confidence 34455566777789999999984
No 309
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=24.93 E-value=94 Score=26.52 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCeEEEE-cCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCccccccc
Q psy13078 35 SFIDNCVELCQPSDVHIC-DGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVES 96 (325)
Q Consensus 35 ~~V~e~a~L~~P~~I~ic-dGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~ 96 (325)
.|++++.++++|..++++ +..+.-.+.+.+.+.+.+.+..+.. .+-|..|.+..-+.+.|.
T Consensus 131 ~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~t~fE~ 192 (218)
T 3dxy_A 131 PFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSE-SNDYVPRPASRPVTKFEQ 192 (218)
T ss_dssp HHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEECCT-TSSCBCCCTTSCCCTTCC
T ss_pred HHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcccccC-cCccCCCCCCCCCcHHHH
Confidence 599999999999998765 4445445667766766655554432 333444444444444444
No 310
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=24.87 E-value=45 Score=26.66 Aligned_cols=20 Identities=30% Similarity=0.132 Sum_probs=15.6
Q ss_pred CceEEEEeecCCccChhhhc
Q psy13078 282 GQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlA 301 (325)
.+..=|+-..++++|||+|.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi 42 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLL 42 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHH
T ss_pred CcceEEEEECcCCCCHHHHH
Confidence 34456777789999999985
No 311
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=24.78 E-value=28 Score=28.64 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=12.9
Q ss_pred EEEeecCCccChhhhc
Q psy13078 286 YIAAAFPSACGKTNLA 301 (325)
Q Consensus 286 yiaaAFPSaCGKTnlA 301 (325)
-|+-..++++|||+|.
T Consensus 27 ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLL 42 (198)
T ss_dssp EEEEEEETTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566689999999985
No 312
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=24.67 E-value=1.2e+02 Score=26.49 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCCc
Q psy13078 29 ISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAET 108 (325)
Q Consensus 29 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~da 108 (325)
+-.++++++++....-.++.|+++.|..+-.+.+...+++.|..+-+.. ++.|-.+ ....++......+..+-.++
T Consensus 57 ~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~-~~~~~~~--~~~~~~~~g~~~~~~~~~~~- 132 (393)
T 3kgw_A 57 IMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGT-NGIWGMR--AAEIADRIGARVHQMIKKPG- 132 (393)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEE-SSHHHHH--HHHHHHHTTCEEEEEECCTT-
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEe-CCchhHH--HHHHHHHcCCceEEEeCCCC-
Confidence 3456677777777665555799988888888888887777665433321 1111000 12334433433333222111
Q ss_pred CCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 109 VPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 109 ~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
.-++++++++.+++. +=| +.++.-.-.|.|...+
T Consensus 133 -------------~~~d~~~l~~~i~~~-----~~~-~v~~~~~~nptG~~~~ 166 (393)
T 3kgw_A 133 -------------EHYTLQEVEEGLAQH-----KPV-LLFLVHGESSTGVVQP 166 (393)
T ss_dssp -------------CCCCHHHHHHHHHHH-----CCS-EEEEESEETTTTEECC
T ss_pred -------------CCCCHHHHHHHHhhC-----CCc-EEEEeccCCcchhhcc
Confidence 237899999999872 123 4455555778886543
No 313
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=24.62 E-value=38 Score=27.69 Aligned_cols=19 Identities=16% Similarity=-0.039 Sum_probs=14.4
Q ss_pred ceEEEEeecCCccChhhhc
Q psy13078 283 QKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlA 301 (325)
+..=|+-..++++|||+|.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi 42 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLL 42 (200)
T ss_dssp EEEEEEEEESTTSSHHHHH
T ss_pred cceEEEEECcCCCCHHHHH
Confidence 3445666679999999985
No 314
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=30.35 E-value=16 Score=29.86 Aligned_cols=31 Identities=32% Similarity=0.193 Sum_probs=20.5
Q ss_pred hHHhhhhhceeCCCCceEEEEeecCCccChhhhc
Q psy13078 268 LAEHMLILGITNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 268 LAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
.|+||-=+ -++.+..-|+-.-++++|||+|.
T Consensus 17 ~~~~m~~~---~~~~~~~ki~v~G~~~~GKSsli 47 (204)
T 3th5_A 17 RGSHMENL---YFQGQAIKCVVVGDGAVGKTCLL 47 (204)
Confidence 35676532 12345566777789999999985
No 315
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=24.46 E-value=29 Score=37.05 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=18.8
Q ss_pred eeCCCCceEEEEeecCCccChhhhccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
++=|.|+.+=|+ -|||||||+|+-+
T Consensus 518 l~i~~Geiv~I~--G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 518 VRFPLGVMTSVT--GVSGSGKSTLVSQ 542 (842)
T ss_dssp EEEESSSEEEEE--CCTTSSHHHHCCC
T ss_pred EEEcCCCEEEEE--cCCCcCHHHHHHH
Confidence 334677766555 8999999999874
No 316
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=24.29 E-value=20 Score=35.41 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEeecCCccChhhhccc
Q psy13078 287 IAAAFPSACGKTNLAML 303 (325)
Q Consensus 287 iaaAFPSaCGKTnlAMl 303 (325)
+.-..|+|||||.+|-.
T Consensus 53 iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARR 69 (444)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 33348999999999753
No 317
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=24.24 E-value=94 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHhh-----cCCCeEEEEcCCHHHHHHHHHHHHhcCc
Q psy13078 30 SPKLKSFIDNCVEL-----CQPSDVHICDGSEREYKELIDLMVKDKT 71 (325)
Q Consensus 30 ~~~v~~~V~e~a~L-----~~P~~I~icdGS~eE~~~l~~~l~~~G~ 71 (325)
.+++++.+++...- +.|+.|+++.|+.+=.+.+.+.+.+.|.
T Consensus 68 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd 114 (370)
T 2z61_A 68 ILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGD 114 (370)
T ss_dssp CHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCC
Confidence 46677777776653 7899999999998888887777766553
No 318
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=24.16 E-value=35 Score=34.44 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=21.2
Q ss_pred CCceEEEEeecCCccChhhhcccCC-CCC--C-ceEEEe
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNP-TLP--G-YKVECV 315 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p-~~p--G-wkv~~V 315 (325)
.|...+|+ -+||||||++|-..- .+. | +++.++
T Consensus 395 ~~~~I~l~--GlsGSGKSTiA~~La~~L~~~G~~~~~~l 431 (573)
T 1m8p_A 395 QGFTIFLT--GYMNSGKDAIARALQVTLNQQGGRSVSLL 431 (573)
T ss_dssp CCEEEEEE--CSTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred cceEEEee--cCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 35556666 799999999986432 222 4 665555
No 319
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=24.11 E-value=37 Score=27.63 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=14.9
Q ss_pred CceEEEEeecCCccChhhhc
Q psy13078 282 GQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlA 301 (325)
-+..=|+-..++++|||+|.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli 41 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLA 41 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEEECCCCcCHHHHH
Confidence 34555666789999999985
No 320
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=24.11 E-value=34 Score=36.09 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCCceEEEEeecCCccChhhhc
Q psy13078 280 PEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 280 P~G~~~yiaaAFPSaCGKTnlA 301 (325)
++|+..-|+ .|+|||||+|.
T Consensus 605 ~~g~i~~It--GpNGsGKSTlL 624 (800)
T 1wb9_A 605 PQRRMLIIT--GPNMGGKSTYM 624 (800)
T ss_dssp SSSCEEEEE--CCTTSSHHHHH
T ss_pred CCCcEEEEE--CCCCCChHHHH
Confidence 568877777 79999999873
No 321
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=24.04 E-value=1.3e+02 Score=28.91 Aligned_cols=123 Identities=13% Similarity=0.261 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHh-----h-cCCCeEEEEcCCHHHHHHHHHHHHhcCc------ccccCCCCCcEEeccCCCcccccccc
Q psy13078 30 SPKLKSFIDNCVE-----L-CQPSDVHICDGSEREYKELIDLMVKDKT------LRPVPKYENCWLARTNPADVARVESK 97 (325)
Q Consensus 30 ~~~v~~~V~e~a~-----L-~~P~~I~icdGS~eE~~~l~~~l~~~G~------~~~L~~~~n~~l~rsdp~DvARve~r 97 (325)
.+++++.|++... + +.|++|++.+|+.+=...+.+.+++.|. +.+-+.|+.. .+.++.-.-
T Consensus 131 ~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~-------~~~~~~~g~ 203 (498)
T 3ihj_A 131 VNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLY-------SAVISELDA 203 (498)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHH-------HHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhH-------HHHHHHcCC
Confidence 3566666666553 2 5899999999999988888888877652 2222233321 233333333
Q ss_pred eEEEcCCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc-------------c
Q psy13078 98 TFICTQEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK-------------I 163 (325)
Q Consensus 98 TfI~t~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~-------------~ 163 (325)
+.+-.+-.++ ++| ++.+++++.+++.=.+ -+-|-+||+ .---|.|.-++. -
T Consensus 204 ~~v~~~~~~~-------------~~~~~d~~~le~~l~~~~~~-~~~k~i~l~-np~NPTG~v~s~~~l~~i~~la~~~~ 268 (498)
T 3ihj_A 204 IQVNYYLDEE-------------NCWALNVNELRRAVQEAKDH-CDPKVLCII-NPGNPTGQVQSRKCIEDVIHFAWEEK 268 (498)
T ss_dssp EEEEEECBGG-------------GTTBCCHHHHHHHHHHHTTT-SEEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred EEEEeecccc-------------ccCCCCHHHHHHHHHhhhcc-CCCeEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 3332221111 133 5889999998875222 012445555 555688888763 1
Q ss_pred eeeccCchhHH
Q psy13078 164 GVEITDSPYVV 174 (325)
Q Consensus 164 GVqlTDS~YVv 174 (325)
.+=|.|.+|--
T Consensus 269 ~~li~De~y~~ 279 (498)
T 3ihj_A 269 LFLLADEVYQD 279 (498)
T ss_dssp CEEEEECTTTT
T ss_pred cEEEEEcCccc
Confidence 35567777753
No 322
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=23.94 E-value=2.7e+02 Score=24.14 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhc
Q psy13078 31 PKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKD 69 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~ 69 (325)
.++++++++... +.|+.|++++|+.+=...+...+.+.
T Consensus 72 ~~l~~~la~~~~-~~~~~i~~~~ggt~a~~~~~~~~~~~ 109 (397)
T 3f9t_A 72 EKAVALLGSLLN-NKDAYGHIVSGGTEANLMALRCIKNI 109 (397)
T ss_dssp HHHHHHHHHHTT-CTTCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCCEEEecCcHHHHHHHHHHHHHH
Confidence 456666666654 47899999999988888777777654
No 323
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=23.71 E-value=82 Score=27.59 Aligned_cols=120 Identities=8% Similarity=0.012 Sum_probs=64.1
Q ss_pred cCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHH----hcCcccccCCCCCcEEeccCCCcccccccceEEEcCC
Q psy13078 29 ISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMV----KDKTLRPVPKYENCWLARTNPADVARVESKTFICTQE 104 (325)
Q Consensus 29 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~----~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~ 104 (325)
.-+++++++++... +.|+.|+++.|+.+=...+...+. +.|..+-+.. + +|-....+-..++...-+.+..+-
T Consensus 44 ~~~~l~~~la~~~g-~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~-~-~~~~~~~~~~~~~~~g~~~~~v~~ 120 (382)
T 4eb5_A 44 AVQEAREKVAKLVN-GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSA-V-EHMSVINPAKFLQKQGFEVEYIPV 120 (382)
T ss_dssp HHHHHHHHHHHHHT-CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEET-T-CCHHHHHHHHHHTTTTCEEEEECB
T ss_pred HHHHHHHHHHHHhC-CCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECC-C-cchHHHHHHHHHHhCCcEEEEecc
Confidence 44667777777665 368899999998887777777776 5553322211 0 110000000000001112222111
Q ss_pred CCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCc---------c-eeeccCchhH
Q psy13078 105 KAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSK---------I-GVEITDSPYV 173 (325)
Q Consensus 105 ~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~---------~-GVqlTDS~YV 173 (325)
.++ .-+|++++++.++++ -.+++++-.-.|.|..... . .. +-|..|-
T Consensus 121 ~~~--------------~~~d~~~l~~~i~~~-------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~ 177 (382)
T 4eb5_A 121 GKY--------------GEVDVSFIDQKLRDD-------TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATAS 177 (382)
T ss_dssp CTT--------------SCBCHHHHHHHCCTT-------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTT
T ss_pred CCC--------------CccCHHHHHHHhcCC-------CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchh
Confidence 100 126888888777541 2467777777788876542 2 34 7787776
No 324
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=23.48 E-value=62 Score=28.49 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCc
Q psy13078 32 KLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKT 71 (325)
Q Consensus 32 ~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~ 71 (325)
-+..|++++.++++|+.+.++.-.+.+...+...+.+.|-
T Consensus 52 ~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~~~~~~~~~gf 91 (260)
T 1g60_A 52 FTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGM 91 (260)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCcHHHHHHHHHHHhhcc
Confidence 4677888889999999987777556667777777777763
No 325
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=23.42 E-value=28 Score=32.15 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=15.0
Q ss_pred eEEEEeecCCccChhhhccc
Q psy13078 284 KKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl 303 (325)
+..+.-.-|.+||||.||+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 33455557999999999983
No 326
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=23.37 E-value=39 Score=32.84 Aligned_cols=34 Identities=21% Similarity=-0.035 Sum_probs=22.9
Q ss_pred EEEeecCCccChhhhcccCCC---CC-CceEEEecccc
Q psy13078 286 YIAAAFPSACGKTNLAMLNPT---LP-GYKVECVGVPY 319 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl~p~---~p-Gwkv~~VGDDI 319 (325)
-|+-+-++|+|||++|.-.-. .. |+||-.|--|.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 333335899999998763211 13 99998887775
No 327
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=23.30 E-value=30 Score=34.51 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=25.0
Q ss_pred CceEEEEeecCCccChhhhcccCC-C--CCCceEEEecccc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAMLNP-T--LPGYKVECVGVPY 319 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAMl~p-~--~pGwkv~~VGDDI 319 (325)
++.+.|+-+-+.++|||+|+--.- . ..|+||-.|.+|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 334455555678999999865211 0 1399999999886
No 328
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=23.15 E-value=37 Score=35.03 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCceEEEEeecCCccChhhhcccCC-CC--CCceEEEe-cccc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLNP-TL--PGYKVECV-GVPY 319 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~p-~~--pGwkv~~V-GDDI 319 (325)
+|...+++ -+||||||++|-..- .+ -||++-.+ ||.+
T Consensus 51 ~g~lIvLt--GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLT--GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEE--CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEE--eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 46667777 789999999986432 22 27877666 4443
No 329
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=23.15 E-value=49 Score=26.80 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=16.2
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
.+..-|+-.-++++|||+|.-
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~ 51 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLL 51 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHH
Confidence 345667777899999999853
No 330
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=23.05 E-value=35 Score=37.62 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=26.3
Q ss_pred eeCCCCceEEEEeecCCccChhhhcccC----CCCCCceEEEeccccc
Q psy13078 277 ITNPEGQKKYIAAAFPSACGKTNLAMLN----PTLPGYKVECVGVPYK 320 (325)
Q Consensus 277 it~P~G~~~yiaaAFPSaCGKTnlAMl~----p~~pGwkv~~VGDDIA 320 (325)
++=+.|++.=|+ -|||||||+|+-+. ++..| +|..=|-||.
T Consensus 1054 l~i~~Ge~v~iv--G~sGsGKSTl~~~l~g~~~p~~G-~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1054 LEVKKGQTLALV--GSSGCGKSTVVQLLERFYDPMAG-SVFLDGKEIK 1098 (1284)
T ss_dssp EEECSSSEEEEE--CSSSTTHHHHHHHHTTSSCCSEE-EEESSSSCTT
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHHhcCcCCCCC-EEEECCEEcc
Confidence 344568887777 89999999987532 33333 4555555554
No 331
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=23.04 E-value=78 Score=27.85 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcc
Q psy13078 29 ISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTL 72 (325)
Q Consensus 29 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~ 72 (325)
..+++++.+++... +.|+.|++++|+.+=.+.+.+.+++.|..
T Consensus 68 ~~~~lr~~la~~~~-~~~~~v~~~~g~t~a~~~~~~~~~~~gd~ 110 (363)
T 3ffh_A 68 WASSLRKEVADFYQ-LEEEELIFTAGVDELIELLTRVLLDTTTN 110 (363)
T ss_dssp -CHHHHHHHHHHHT-CCGGGEEEESSHHHHHHHHHHHHCSTTCE
T ss_pred chHHHHHHHHHHhC-CChhhEEEeCCHHHHHHHHHHHHccCCCE
Confidence 34677878777776 67999999999998888888877766643
No 332
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=22.97 E-value=1.7e+02 Score=26.06 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcC-ccccc--CCCCCcEEeccCCCcccccccceEEEc
Q psy13078 31 PKLKSFIDNCVE-----LCQPSDVHICDGSEREYKELIDLMVKDK-TLRPV--PKYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 31 ~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~l~~~G-~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
+++++.+++... -+.|+.|+++.|+.+=...+.+.+++.| ..+-+ +.|++ ..+.++.-..+.+..
T Consensus 79 ~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~-------~~~~~~~~g~~~~~v 151 (398)
T 3ele_A 79 VETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPE-------YKVFVNAAGARLVEV 151 (398)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTH-------HHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchh-------hHHHHHHcCCEEEEE
Confidence 556665555542 1689999999999998888888887777 33222 12222 123444444444333
Q ss_pred CCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 103 QEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 103 ~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
+-.++ +.-++++++++.+++ .-.+.++.-.-.|.|.-++
T Consensus 152 ~~~~~-------------~~~~d~~~l~~~l~~-------~~~~v~~~~p~nptG~~~~ 190 (398)
T 3ele_A 152 PADTE-------------HFQIDFDALEERINA-------HTRGVIINSPNNPSGTVYS 190 (398)
T ss_dssp CCCTT-------------TSSCCHHHHHHTCCT-------TEEEEEECSSCTTTCCCCC
T ss_pred ecCCc-------------CCcCCHHHHHHHhCc-------CCCEEEEcCCCCCCCCCCC
Confidence 22111 123577777776643 1234455555677887665
No 333
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=22.87 E-value=32 Score=37.49 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.2
Q ss_pred CCCCceEEEEeecCCccChhhhccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAML 303 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl 303 (325)
=+.|+.+-+. .|||||||+|.-+
T Consensus 458 I~~Ge~v~Li--GpNGsGKSTLLk~ 480 (986)
T 2iw3_A 458 LKRARRYGIC--GPNGCGKSTLMRA 480 (986)
T ss_dssp EETTCEEEEE--CSTTSSHHHHHHH
T ss_pred EcCCCEEEEE--CCCCCCHHHHHHH
Confidence 3468888777 7999999999643
No 334
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=22.70 E-value=23 Score=30.13 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=11.5
Q ss_pred eEEEEeecCCccChhhh
Q psy13078 284 KKYIAAAFPSACGKTNL 300 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnl 300 (325)
..-|. -|.|+||||+
T Consensus 25 ~~~I~--G~NgsGKSti 39 (203)
T 3qks_A 25 INLII--GQNGSGKSSL 39 (203)
T ss_dssp EEEEE--CCTTSSHHHH
T ss_pred eEEEE--cCCCCCHHHH
Confidence 44444 5999999997
No 335
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=22.55 E-value=22 Score=29.22 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=15.5
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
..+..-|+-.-++++|||+|.
T Consensus 26 ~~~~~~i~v~G~~~~GKSsli 46 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAI 46 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHH
Confidence 344455666789999999985
No 336
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=22.51 E-value=42 Score=30.90 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=25.3
Q ss_pred CCCCceEEEEeecCCccChhhhcccC-CCC--CCceEEEeccccc
Q psy13078 279 NPEGQKKYIAAAFPSACGKTNLAMLN-PTL--PGYKVECVGVPYK 320 (325)
Q Consensus 279 ~P~G~~~yiaaAFPSaCGKTnlAMl~-p~~--pGwkv~~VGDDIA 320 (325)
..+|...-++ .|.|+|||+|+-.. ..+ .|-+|.+++.|..
T Consensus 53 ~~~~~~i~i~--G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 53 CGNTLRLGVT--GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp CSCSEEEEEE--ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cCCCEEEEEE--cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 3445555555 49999999885321 111 3778888887763
No 337
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=22.33 E-value=37 Score=27.17 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=14.1
Q ss_pred ceEEEEeecCCccChhhhc
Q psy13078 283 QKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlA 301 (325)
+..-|+-..++++|||+|.
T Consensus 20 ~~~ki~v~G~~~~GKSsli 38 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTII 38 (190)
T ss_dssp -CEEEEEEECTTSSHHHHH
T ss_pred CccEEEEECCCCCCHHHHH
Confidence 3455666679999999985
No 338
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=22.28 E-value=46 Score=26.82 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=15.2
Q ss_pred CceEEEEeecCCccChhhhc
Q psy13078 282 GQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlA 301 (325)
.+..-|+-..++++|||+|.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi 38 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALT 38 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHH
T ss_pred CceEEEEEECCCCCcHHHHH
Confidence 34456777789999999996
No 339
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=22.20 E-value=32 Score=37.08 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=16.7
Q ss_pred eCCCCceEEEEeecCCccChhhhc
Q psy13078 278 TNPEGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 278 t~P~G~~~yiaaAFPSaCGKTnlA 301 (325)
+=|.|+.+=|+ -|||||||+|+
T Consensus 606 ~I~~Geiv~I~--G~SGSGKSTLl 627 (916)
T 3pih_A 606 EIPLGVFVCVT--GVSGSGKSSLV 627 (916)
T ss_dssp EEESSSEEEEE--CSTTSSHHHHH
T ss_pred EEcCCcEEEEE--ccCCCChhhhH
Confidence 33667765555 89999999996
No 340
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=22.17 E-value=1.4e+02 Score=26.07 Aligned_cols=109 Identities=11% Similarity=0.151 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHHhh-cCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCC
Q psy13078 29 ISPKLKSFIDNCVEL-CQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAE 107 (325)
Q Consensus 29 l~~~v~~~V~e~a~L-~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~d 107 (325)
+-+++.+|+.+...+ +.|+.|+++.|+.+=.+.+...+++.|..+-+.. | +|.. ..+.++.-....+-.+-..+
T Consensus 64 ~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~-~-~~~~---~~~~~~~~g~~~~~~~~~~~ 138 (383)
T 3kax_A 64 IGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTKENESVLVQP-P-IYPP---FFEMVTTNNRQLCVSPLQKQ 138 (383)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHCCTTCEEEECS-S-CCHH---HHHHHHHTTCEEEECCCEEE
T ss_pred HHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEcC-C-CcHH---HHHHHHHcCCEEEeccceec
Confidence 334444444443322 6899999999999888888888776664333211 1 1111 11334433333333221111
Q ss_pred cCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 108 TVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 108 a~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
+ +.| ++++++++.+++ .-.+.+++-.-.|.|..++
T Consensus 139 ------~------~~~~~d~~~l~~~l~~-------~~~~v~i~~p~nptG~~~~ 174 (383)
T 3kax_A 139 ------N------DTYAIDFEHLEKQFQQ-------GVKLMLLCSPHNPIGRVWK 174 (383)
T ss_dssp ------T------TEEECCHHHHHHHHTT-------TCCEEEEESSBTTTTBCCC
T ss_pred ------C------CcEEEcHHHHHHHhCc-------CCeEEEEeCCCCCCCcCcC
Confidence 0 134 688888888832 2235566777788887654
No 341
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=22.13 E-value=52 Score=30.13 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHH----hh--cCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEE
Q psy13078 30 SPKLKSFIDNCV----EL--CQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFIC 101 (325)
Q Consensus 30 ~~~v~~~V~e~a----~L--~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~ 101 (325)
.+++++.+++.. .+ +.|+.|+++.|+.+=.+.+...+.+.|..+-. +.|++ ..+.++.-..+.+-
T Consensus 87 ~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~-------~~~~~~~~g~~~~~ 159 (425)
T 1vp4_A 87 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLG-------AINAFRQYLANFVV 159 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHH-------HHHHHHTTTCEEEE
T ss_pred CHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHH-------HHHHHHHcCCEEEE
Confidence 456676666665 44 68999999999988888887777666632222 12222 11333333333322
Q ss_pred cCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCc---cccCCCeEEEEecccCCCCCCCC
Q psy13078 102 TQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFP---GCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 102 t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~---G~M~GRtMyViPfsmGPigsp~s 161 (325)
.+-.++ -++++++++.+.+.-. |- +-|-.||+|..-.|.|..++
T Consensus 160 v~~~~~---------------~~d~~~l~~~l~~~~~~~~~~-~~~~v~~~~~~~nptG~~~~ 206 (425)
T 1vp4_A 160 VPLEDD---------------GMDLNVLERKLSEFDKNGKIK-QVKFIYVVSNFHNPAGVTTS 206 (425)
T ss_dssp EEEETT---------------EECHHHHHHHHHHHHHTTCGG-GEEEEEEECSSCTTTCCCCC
T ss_pred eccCCC---------------CCCHHHHHHHHHhhhhcccCC-CceEEEECCCCCCCCCCcCC
Confidence 211101 1688888888865100 00 11334678888889998765
No 342
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=22.13 E-value=3.7e+02 Score=22.91 Aligned_cols=38 Identities=29% Similarity=0.236 Sum_probs=28.6
Q ss_pred cccCHHHHHHHHHhc----CccccCCCeEEEEecccCCCCCC
Q psy13078 122 NWISPQDYEEAIMQR----FPGCMKGRTMYVIPFSMGPVGSP 159 (325)
Q Consensus 122 nwm~~~~~~~~l~~~----f~G~M~GRtMyViPfsmGPigsp 159 (325)
|+.-|.-++..|+=+ -.+..+||..-++=.|.|+.|+-
T Consensus 79 n~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~ 120 (190)
T 3u7r_A 79 NRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA 120 (190)
T ss_dssp TTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH
T ss_pred cccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH
Confidence 555566666666532 35789999999999999999974
No 343
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=22.10 E-value=1.6e+02 Score=26.18 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhh-----cCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEEc
Q psy13078 30 SPKLKSFIDNCVEL-----CQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 30 ~~~v~~~V~e~a~L-----~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
.+++++-+++...- +.|+.|+++.|+.+=.+.+.+.+.+.|..+-. +.|++. .+.++.-....+-.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~-------~~~~~~~g~~~~~~ 140 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPF-------FMAIKNQERKIIEC 140 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHH-------HHHHHTTTCEEEEC
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhH-------HHHHHHcCCEEEec
Confidence 45666666555421 67999999999988888888877666632222 122221 12333333333322
Q ss_pred CCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 103 QEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 103 ~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
+-..+ + ++| ++++++++.+++. .-.+.+++-.-.|.|..++
T Consensus 141 ~~~~~------~------g~~~~d~~~l~~~l~~~------~~~~v~~~~~~nptG~~~~ 182 (399)
T 1c7n_A 141 ELLEK------D------GYYTIDFQKLEKLSKDK------NNKALLFCSPHNPVGRVWK 182 (399)
T ss_dssp CCEEE------T------TEEECCHHHHHHHHTCT------TEEEEEEESSBTTTTBCCC
T ss_pred ccccC------C------CCEEEcHHHHHHHhccC------CCcEEEEcCCCCCCCcCcC
Confidence 21100 0 134 7888888888631 1235566777788887766
No 344
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.04 E-value=23 Score=36.14 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=12.0
Q ss_pred EeecCCccChhhhcc
Q psy13078 288 AAAFPSACGKTNLAM 302 (325)
Q Consensus 288 aaAFPSaCGKTnlAM 302 (325)
.=-.|+|||||.+|-
T Consensus 205 LL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 205 VLIGEPGVGKTAIAE 219 (758)
T ss_dssp EEESCTTTTTHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 334899999999974
No 345
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=22.02 E-value=20 Score=33.36 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=14.9
Q ss_pred CCceEEEEeecCCccChhhhc
Q psy13078 281 EGQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlA 301 (325)
+|+..-+. -|||+|||+|.
T Consensus 172 ~G~~~~lv--G~sG~GKSTLl 190 (307)
T 1t9h_A 172 QDKTTVFA--GQSGVGKSSLL 190 (307)
T ss_dssp TTSEEEEE--ESHHHHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHH
Confidence 47766555 79999999975
No 346
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=21.59 E-value=34 Score=34.07 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=16.9
Q ss_pred CCceEEEEeecCCccChhhhcccC
Q psy13078 281 EGQKKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 281 ~G~~~yiaaAFPSaCGKTnlAMl~ 304 (325)
.|++.=|. -||+||||.|+.+.
T Consensus 173 rGQr~~Iv--G~sG~GKTtLl~~I 194 (422)
T 3ice_A 173 RGQRGLIV--APPKAGKTMLLQNI 194 (422)
T ss_dssp TTCEEEEE--CCSSSSHHHHHHHH
T ss_pred CCcEEEEe--cCCCCChhHHHHHH
Confidence 46666555 69999999999653
No 347
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=21.56 E-value=2.1e+02 Score=25.70 Aligned_cols=110 Identities=9% Similarity=0.090 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHH-hhcCCC---eEEEEcCCHHHHHHHHHHHHhcCcccccC--CCCCcEEeccCCCcccccccceEEEcC
Q psy13078 30 SPKLKSFIDNCV-ELCQPS---DVHICDGSEREYKELIDLMVKDKTLRPVP--KYENCWLARTNPADVARVESKTFICTQ 103 (325)
Q Consensus 30 ~~~v~~~V~e~a-~L~~P~---~I~icdGS~eE~~~l~~~l~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~t~ 103 (325)
.+++++.|++.. ....|+ .|+++.|+.+=...+.+.+++.|..+-+. .|++ ..+.++.-..+.+-.+
T Consensus 82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~-------~~~~~~~~g~~~~~v~ 154 (418)
T 3rq1_A 82 IPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGA-------YRVICSDTGRTLVTYS 154 (418)
T ss_dssp CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTH-------HHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchh-------HHHHHHHcCCEEEEEe
Confidence 566777777644 444688 99999999998888888887777543332 2222 1234444444443322
Q ss_pred CCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecc-cCCCCCCCC
Q psy13078 104 EKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFS-MGPVGSPLS 161 (325)
Q Consensus 104 ~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfs-mGPigsp~s 161 (325)
-..+ ..-++++++++.+++.... +-|.++++... -.|.|..++
T Consensus 155 ~~~~-------------~~~~d~~~l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~ 198 (418)
T 3rq1_A 155 LFDE-------------HNNFNHEAFQNRVNELAAK--QTNVVVIFNTPGNNPTGYSIE 198 (418)
T ss_dssp SBCT-------------TSSBCHHHHHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCC
T ss_pred eeCC-------------CCCcCHHHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCC
Confidence 1111 0135788888888753210 12348888766 799999876
No 348
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=21.23 E-value=93 Score=24.31 Aligned_cols=41 Identities=10% Similarity=-0.026 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEE-EcCCHHHHHHHHHHHHhcCc
Q psy13078 31 PKLKSFIDNCVELCQPSDVHI-CDGSEREYKELIDLMVKDKT 71 (325)
Q Consensus 31 ~~v~~~V~e~a~L~~P~~I~i-cdGS~eE~~~l~~~l~~~G~ 71 (325)
..+.+++.++.++++|..+++ .+-+.++.+.+.+.+.+.|-
T Consensus 111 ~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 111 GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF 152 (192)
T ss_dssp TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC
Confidence 346889999999999996655 45678888899999988884
No 349
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=21.12 E-value=31 Score=28.06 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=11.6
Q ss_pred EEeecCCccChhhhcc
Q psy13078 287 IAAAFPSACGKTNLAM 302 (325)
Q Consensus 287 iaaAFPSaCGKTnlAM 302 (325)
+....|.|+|||-.+.
T Consensus 41 ~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFA 56 (207)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCChHHHHHH
Confidence 4444799999997543
No 350
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=21.11 E-value=20 Score=29.12 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=13.1
Q ss_pred EEeecCCccChhhhccc
Q psy13078 287 IAAAFPSACGKTNLAML 303 (325)
Q Consensus 287 iaaAFPSaCGKTnlAMl 303 (325)
+....|.|+|||-++.+
T Consensus 51 ~li~~~tGsGKT~~~~~ 67 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVY 67 (216)
T ss_dssp EEEECSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 44458999999987754
No 351
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=21.08 E-value=23 Score=30.99 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=13.1
Q ss_pred EEeecCCccChhhhccc
Q psy13078 287 IAAAFPSACGKTNLAML 303 (325)
Q Consensus 287 iaaAFPSaCGKTnlAMl 303 (325)
+....|.|+|||..+++
T Consensus 94 ~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 94 LLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CEECCCTTSCHHHHHHH
T ss_pred EEEEccCCCCchHHHHH
Confidence 45568999999987654
No 352
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=21.03 E-value=45 Score=26.95 Aligned_cols=18 Identities=28% Similarity=0.082 Sum_probs=13.8
Q ss_pred eEEEEeecCCccChhhhc
Q psy13078 284 KKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlA 301 (325)
..-|+-..++++|||+|.
T Consensus 20 ~~~i~v~G~~~~GKSsli 37 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLL 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 344566679999999986
No 353
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=20.78 E-value=9.7 Score=31.22 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCcccccCC---CCCcEEeccCCCcccccccc
Q psy13078 55 SEREYKELIDLMVKDKTLRPVPK---YENCWLARTNPADVARVESK 97 (325)
Q Consensus 55 S~eE~~~l~~~l~~~G~~~~L~~---~~n~~l~rsdp~DvARve~r 97 (325)
|++|.+.+.+.|+++|.+.+..- --..+-.-..|.|++||..|
T Consensus 40 tdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~ar 85 (103)
T 2kvc_A 40 SHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERVRAR 85 (103)
T ss_dssp CHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCSSCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 89999999999999985444320 00111122446677777654
No 354
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=20.78 E-value=1.4e+02 Score=26.38 Aligned_cols=108 Identities=8% Similarity=0.108 Sum_probs=61.5
Q ss_pred cCHHHHHHHHHHHhhcCCC-eEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccceEEEcCCCCC
Q psy13078 29 ISPKLKSFIDNCVELCQPS-DVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAE 107 (325)
Q Consensus 29 l~~~v~~~V~e~a~L~~P~-~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rTfI~t~~~~d 107 (325)
+-+++.+++++.... .|+ .|+++.|+.+=...+...+++.|..+-+.. | +|... ...+.++...-+.+..+-..
T Consensus 68 ~~~~~~~~la~~~g~-~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~-~-~~~~~-~~~~~~~~~g~~~~~v~~~~- 142 (393)
T 1vjo_A 68 LMDEIQSLLRYVWQT-ENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGV-A-GYFGN-RLVDMAGRYGADVRTISKPW- 142 (393)
T ss_dssp HHHHHHHHHHHHHTC-CCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEE-S-SHHHH-HHHHHHHHTTCEEEEEECCT-
T ss_pred HHHHHHHHHHHHhCC-CCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEc-C-ChhHH-HHHHHHHHcCCceEEEecCC-
Confidence 345666666666554 678 899999998888888887776664322211 1 11110 01233333333333222110
Q ss_pred cCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCC
Q psy13078 108 TVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPL 160 (325)
Q Consensus 108 a~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~ 160 (325)
.-.++++++++.+++. .-.+++++-.-.|.|...
T Consensus 143 -------------~~~~d~~~l~~~l~~~------~~~~v~~~~~~nptG~~~ 176 (393)
T 1vjo_A 143 -------------GEVFSLEELRTALETH------RPAILALVHAETSTGARQ 176 (393)
T ss_dssp -------------TCCCCHHHHHHHHHHH------CCSEEEEESEETTTTEEC
T ss_pred -------------CCCCCHHHHHHHHhhC------CceEEEEeccCCCcceec
Confidence 1137899999998763 124677777777887654
No 355
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=20.68 E-value=71 Score=28.18 Aligned_cols=93 Identities=4% Similarity=0.008 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHH----HhcCcccccC--CCCCcEEeccCCCcccccccceEEEcCCCCCcCCCCCCCccC
Q psy13078 45 QPSDVHICDGSEREYKELIDLM----VKDKTLRPVP--KYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKG 118 (325)
Q Consensus 45 ~P~~I~icdGS~eE~~~l~~~l----~~~G~~~~L~--~~~n~~l~rsdp~DvARve~rTfI~t~~~~da~p~~~~Gv~~ 118 (325)
.|+.|+++.|+.+=...+...+ ++.|..+-+. .|++.+. ....+++...-..+..+-..
T Consensus 84 ~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~------------ 148 (406)
T 1kmj_A 84 SAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIV---PWQMLCARVGAELRVIPLNP------------ 148 (406)
T ss_dssp CGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTH---HHHHHHHHHTCEEEEECBCT------------
T ss_pred CCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHH---HHHHHHHhCCCEEEEEecCC------------
Confidence 4789999999887777777666 4455322221 1221110 00122332222222222110
Q ss_pred CCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 119 TLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 119 ~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
.-.++++++++.+++. -.+.+++-...|.|...+
T Consensus 149 --~~~~d~~~l~~~l~~~-------~~~v~~~~~~nptG~~~~ 182 (406)
T 1kmj_A 149 --DGTLQLETLPTLFDEK-------TRLLAITHVSNVLGTENP 182 (406)
T ss_dssp --TSCBCGGGHHHHCCTT-------EEEEEEESBCTTTCCBCC
T ss_pred --CCCcCHHHHHHHhccC-------CeEEEEeCCCccccCcCC
Confidence 0136788888777541 235566777788887665
No 356
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=20.66 E-value=47 Score=32.78 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=24.1
Q ss_pred eEEEEeecCCccChhhhcccCC---CCCCceEEEecccc
Q psy13078 284 KKYIAAAFPSACGKTNLAMLNP---TLPGYKVECVGVPY 319 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl~p---~~pGwkv~~VGDDI 319 (325)
...|.-+-|+|+|||+++--.- .-.|+||-.|.-|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4555556689999999864211 12599998887663
No 357
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=20.58 E-value=31 Score=33.56 Aligned_cols=34 Identities=21% Similarity=0.065 Sum_probs=22.9
Q ss_pred EEEeecCCccChhhhcccCCC---CCCceEEEecccc
Q psy13078 286 YIAAAFPSACGKTNLAMLNPT---LPGYKVECVGVPY 319 (325)
Q Consensus 286 yiaaAFPSaCGKTnlAMl~p~---~pGwkv~~VGDDI 319 (325)
.|+-+-|+|+|||+||.-.-- -.|+||-+|.-|.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 344445899999998753211 2488999888774
No 358
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=20.51 E-value=26 Score=34.82 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=13.8
Q ss_pred eEEEEeecCCccChhhhcccC
Q psy13078 284 KKYIAAAFPSACGKTNLAMLN 304 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAMl~ 304 (325)
-..+. .|+|||||.||-..
T Consensus 43 ~VLL~--GpPGtGKT~LAraL 61 (500)
T 3nbx_X 43 SVFLL--GPPGIAKSLIARRL 61 (500)
T ss_dssp EEEEE--CCSSSSHHHHHHHG
T ss_pred eeEee--cCchHHHHHHHHHH
Confidence 34444 69999999998643
No 359
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=20.28 E-value=48 Score=27.55 Aligned_cols=19 Identities=42% Similarity=0.413 Sum_probs=15.1
Q ss_pred ceEEEEeecCCccChhhhc
Q psy13078 283 QKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 283 ~~~yiaaAFPSaCGKTnlA 301 (325)
+..-|+-..++++|||+|.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi 45 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALL 45 (205)
T ss_dssp CEEEEEEEESTTSSHHHHH
T ss_pred eeeEEEEECCCCCCHHHHH
Confidence 4556777789999999985
No 360
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=20.23 E-value=44 Score=30.22 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=14.6
Q ss_pred CceEEEEeecCCccChhhhcc
Q psy13078 282 GQKKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlAM 302 (325)
+.-..|. .|+|+|||.+|-
T Consensus 25 ~~~vLi~--Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIH--GDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEE--SCTTSCHHHHHH
T ss_pred CCcEEEE--CCCCchHHHHHH
Confidence 3456666 799999999984
No 361
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=20.14 E-value=33 Score=28.40 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=11.6
Q ss_pred EEeecCCccChhhhc
Q psy13078 287 IAAAFPSACGKTNLA 301 (325)
Q Consensus 287 iaaAFPSaCGKTnlA 301 (325)
+....|.|+|||-.+
T Consensus 54 ~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 54 VLAQAQSGTGKTGTF 68 (224)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 455689999999653
No 362
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=20.13 E-value=52 Score=27.21 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=15.5
Q ss_pred CceEEEEeecCCccChhhhc
Q psy13078 282 GQKKYIAAAFPSACGKTNLA 301 (325)
Q Consensus 282 G~~~yiaaAFPSaCGKTnlA 301 (325)
-+..-|+-..++++|||+|.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli 51 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLL 51 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHH
T ss_pred cceEEEEEECcCCCCHHHHH
Confidence 34556777789999999995
No 363
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=20.05 E-value=90 Score=28.03 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHH----hh-cCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--CCCCCcEEeccCCCcccccccceEEEc
Q psy13078 30 SPKLKSFIDNCV----EL-CQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVARVESKTFICT 102 (325)
Q Consensus 30 ~~~v~~~V~e~a----~L-~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L--~~~~n~~l~rsdp~DvARve~rTfI~t 102 (325)
.+++++-+++.. .+ +.|+.|+++.|+.+=.+.+...+.+.|..+-+ +.|++. .+.++.-.-..+..
T Consensus 80 ~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~-------~~~~~~~g~~~~~v 152 (389)
T 1o4s_A 80 IYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSY-------IPQIILAGGTVNVV 152 (389)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTH-------HHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhH-------HHHHHHcCCEEEEE
Confidence 355666555554 22 48999999999998888888877766643222 223332 13333333333322
Q ss_pred CCCCCcCCCCCCCccCCCccc-cCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCC
Q psy13078 103 QEKAETVPDTKPGVKGTLGNW-ISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLS 161 (325)
Q Consensus 103 ~~~~da~p~~~~Gv~~~l~nw-m~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s 161 (325)
+-..+ .+| ++++++++.+++ .-.+.+++-.-.|.|..++
T Consensus 153 ~~~~~-------------~~~~~d~~~l~~~l~~-------~~~~v~~~~p~nptG~~~~ 192 (389)
T 1o4s_A 153 ETFMS-------------KNFQPSLEEVEGLLVG-------KTKAVLINSPNNPTGVVYR 192 (389)
T ss_dssp ECCGG-------------GTTCCCHHHHHHTCCT-------TEEEEEEESSCTTTCCCCC
T ss_pred ecCCc-------------cCCCCCHHHHHHhccc-------CceEEEEcCCCCCCCCCCC
Confidence 21111 023 577877776654 1235566666678888765
No 364
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=20.05 E-value=53 Score=26.69 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=14.0
Q ss_pred eEEEEeecCCccChhhhcc
Q psy13078 284 KKYIAAAFPSACGKTNLAM 302 (325)
Q Consensus 284 ~~yiaaAFPSaCGKTnlAM 302 (325)
..-|+-.-++++|||+|.-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~ 47 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILY 47 (192)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3445556799999999854
Done!