RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13078
(325 letters)
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
2fah_A* 2qzy_A*
Length = 608
Score = 379 bits (974), Expect = e-129
Identities = 174/296 (58%), Positives = 223/296 (75%), Gaps = 4/296 (1%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
+SA+ + F++ V LC+P +V +CDGSE E KEL+ + D L P+PKY+NCW
Sbjct: 2 STSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCW 61
Query: 83 LARTNPADVARVESKTFICTQEKAETVPDTKP-GVKGTLGNWISPQDYEEAIMQRFPGCM 141
LART+P DVARVESKT + T E+++ VP P G LGNW+SP ++ A+ +RFPGCM
Sbjct: 62 LARTDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGCM 121
Query: 142 KGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKAL 201
GR +YVIPFSMGP SPL+K+GV++TDSPYVV SMRIMTR+G VL LD D FV+ L
Sbjct: 122 AGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVGPAVLQRLDDD--FVRCL 179
Query: 202 HSVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGST 260
HSVG P+ + WPCDP R ++ H P+ IVS+GSGYGGNSLLGKKCFALRI S
Sbjct: 180 HSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASR 239
Query: 261 IAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
+A+++GWLAEHMLILG+T+P G+K+Y+AAAFPSACGKTNLAM+ P+LPG+++ CVG
Sbjct: 240 MAQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVG 295
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate;
GTP-dependent, signaling protein, lyase; 2.30A
{Corynebacterium glutamicum}
Length = 610
Score = 373 bits (959), Expect = e-126
Identities = 144/296 (48%), Positives = 196/296 (66%), Gaps = 12/296 (4%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVP--KYEN 80
G + +L ++I + VEL QP V DGS+ E+ + + +V+ TL + K N
Sbjct: 10 QGEAPTKNKELLNWIADAVELFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRPN 69
Query: 81 CWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGC 140
+LAR+NP+DVARVES+TFIC++++ + P NW PQ ++ + + + G
Sbjct: 70 SYLARSNPSDVARVESRTFICSEKEEDAGP---------TNNWAPPQAMKDEMSKHYAGS 120
Query: 141 MKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKA 200
MKGRTMYV+PF MGP+ P K+GV++TDS YVV SMRIMTR+G L+ + A+ FV+
Sbjct: 121 MKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMGIEALDKIGANGSFVRC 180
Query: 201 LHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGST 260
LHSVG P+ E WPC+ + I P EI SYGSGYGGN++L KKC+ALRI S
Sbjct: 181 LHSVGAPLEPGQEDVAWPCNDTKYIT-QFPETKEIWSYGSGYGGNAILAKKCYALRIASV 239
Query: 261 IAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
+A+ EGW+AEHMLIL + NPEG+ +IAAAFPSACGKTNLAM+ PT+PG+ + VG
Sbjct: 240 MAREEGWMAEHMLILKLINPEGKAYHIAAAFPSACGKTNLAMITPTIPGWTAQVVG 295
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis,
lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB:
3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Length = 624
Score = 371 bits (954), Expect = e-125
Identities = 189/295 (64%), Positives = 229/295 (77%), Gaps = 3/295 (1%)
Query: 23 HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
G + ++ +++ F++ +LCQP +HICDGSE EY L+ M ++ +R + KY+NCW
Sbjct: 19 QGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCW 78
Query: 83 LARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMK 142
LA T+P DVAR+ESKT I TQE+ +TVP K G + LG W+S +D+E+A RFPGCMK
Sbjct: 79 LALTDPRDVARIESKTVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGCMK 137
Query: 143 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALH 202
GRTMYVIPFSMGP+GSPL+KIG+E+TDSPYVV SMRIMTR+GT VL L D F+K LH
Sbjct: 138 GRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALG-DGEFIKCLH 196
Query: 203 SVGTP-VSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTI 261
SVG P K W C+PE T+I H P EI+S+GSGYGGNSLLGKKCFALRI S +
Sbjct: 197 SVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRL 256
Query: 262 AKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
AK EGWLAEHMLILGITNPEG+KKY+AAAFPSACGKTNLAM+NPTLPG+KVECVG
Sbjct: 257 AKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVG 311
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 8e-04
Identities = 63/360 (17%), Positives = 101/360 (28%), Gaps = 128/360 (35%)
Query: 12 FNQEIRKFSLKHGYVSAISPKLKSFIDNCVELC---QPSDVHICDGSEREYKELIDLMVK 68
+ +I F L + SP+ + ++ +L P+ D S + + +
Sbjct: 180 MDFKI--FWLNLKNCN--SPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 69 DKTLRPVPKYENC-------WLARTNPADVARVESKTFICTQEKAETVPD---------- 111
+ L YENC A+ + + K + T+ K V D
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQ--VTDFLSAATTTHI 289
Query: 112 ---------TKPGVKGTLGNW--ISPQDY-EEAIMQRFPGCMKGRTMYVIPFSMGPVGSP 159
T VK L + PQD E + +P
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT----------------------TNP 327
Query: 160 L--SKIGVEITDSP----YV--VGSMRIMTRIGTPVLNLLDAD--QPFVKALHSVGTPVS 209
S I I D V ++ T I + LN+L+ + L SV
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRL-SV----- 380
Query: 210 GKHEFPE------------WPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRI 257
FP W + +++ N++ Y SL+ K+ I
Sbjct: 381 ----FPPSAHIPTILLSLIWFDVIKSDVMV---VVNKLHKY-------SLVEKQPKESTI 426
Query: 258 G------STIAKREGWLAEHMLILGITNPEGQKKY-IAAAFPSACGKTNLAMLNPTLPGY 310
K E A H I+ Y I F S ++ P L Y
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIV--------DHYNIPKTFDSD------DLIPPYLDQY 472
Score = 32.5 bits (73), Expect = 0.20
Identities = 31/202 (15%), Positives = 54/202 (26%), Gaps = 60/202 (29%)
Query: 127 QDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGV-EITDSPYVVGSMRIMTRIGT 185
+E+A + F C + + LSK + I S V +
Sbjct: 23 SVFEDAFVDNFD-C------KDVQDMPKSI---LSKEEIDHIIMSKDAVSGTLRLFWT-- 70
Query: 186 PVLNLLDADQPFVKALHSVGTPVSGKHEF-----PEWPCDPERTIILHKPAANEIVSYGS 240
LL + V+ V + ++F P ++ + +
Sbjct: 71 ----LLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL----- 119
Query: 241 GYGGNSLLGK-------KCFALRIGSTIAKREGWLAEH-MLILGITNPEGQKKYIAAAFP 292
Y N + K LR + + +L G
Sbjct: 120 -YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--------G---------- 160
Query: 293 SACGKTNLAMLNPTLPGYKVEC 314
GKT +A+ YKV+C
Sbjct: 161 --SGKTWVALD--VCLSYKVQC 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.88
Identities = 56/294 (19%), Positives = 84/294 (28%), Gaps = 97/294 (32%)
Query: 66 MVKDKTLRPVPKYENCWLART--NPADVARVESKTF----ICTQE-KAETVPDTKPGVKG 118
M D L Y+ A+ N AD ++ F I T+ G
Sbjct: 1631 MGMD--L-----YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG-----G 1678
Query: 119 TLGNWISPQDYEEAIMQRFP-GCMKGRTMY--------VIPFSMGPVGSPLSKIGVEITD 169
G I ++Y I + G +K ++ F G LS + T
Sbjct: 1679 EKGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGL-LSA--TQFT- 1732
Query: 170 SP--YVVG--SMRIMTRIGTPVLNLLDADQPFVKALHSVG-----TPVSGKHEFPEWPCD 220
P ++ + + G L+ AD F A HS+G ++
Sbjct: 1733 QPALTLMEKAAFEDLKSKG-----LIPADATF--AGHSLGEYAALASLADVMSI------ 1779
Query: 221 PERTI-ILHK--PAANEIVSYGSGYGGNSLLGKKCFALRIGS---------------TIA 262
E + ++ V G S G A+ G +
Sbjct: 1780 -ESLVEVVFYRGMTMQVAVPRDEL--GRSNYG--MIAINPGRVAASFSQEALQYVVERVG 1834
Query: 263 KREGWLAEHMLILGITN---PEGQKKYIAAAFPSACGKT-NLAMLNPTLPGYKV 312
KR GWL E I N Q Y+AA G L + L K+
Sbjct: 1835 KRTGWLVE------IVNYNVENQQ--YVAA------GDLRALDTVTNVLNFIKL 1874
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.5
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 13/34 (38%)
Query: 91 VARVES--KTFICTQEKAETVPDTKP--GVKGTL 120
+ ++++ K + D+ P +K T+
Sbjct: 22 LKKLQASLKLY---------ADDSAPALAIKATM 46
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.38A {Colwellia psychrerythraea}
Length = 94
Score = 26.5 bits (59), Expect = 4.1
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 277 ITNPEGQKKYIAAAFPS 293
+ E ++Y A +
Sbjct: 13 PKDAEKLQQYGARVAST 29
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta
barrels, structural genomics, protein structure
initiative; 2.00A {Agrobacterium tumefaciens str} SCOP:
d.58.4.16
Length = 99
Score = 26.5 bits (59), Expect = 4.3
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 277 ITNPEGQKKYIAAAFP 292
+ + E K Y++ A P
Sbjct: 14 VRDSERYKDYVSTAKP 29
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 3.0A
{Thermotoga maritima} SCOP: d.215.1.1
Length = 213
Score = 26.8 bits (60), Expect = 7.8
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 114 PGVKGTLGNWIS-PQDYEEAI 133
PG+ + N I + Y A+
Sbjct: 42 PGLVDVVSNLIEVDEKYSLAV 62
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 2.0A
{Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Length = 186
Score = 26.8 bits (60), Expect = 8.7
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 114 PGVKGTLGNWIS-PQDYEEAI 133
PG+ + N I + Y A+
Sbjct: 30 PGLVDVVSNLIEVDEKYSLAV 50
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
{Wolinella succinogenes} SCOP: c.88.1.1
Length = 330
Score = 26.8 bits (60), Expect = 9.2
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 173 VVGSMRIMTRIGT--PVLNLLDA 193
+VG+MR + + P +NL +A
Sbjct: 115 LVGAMRPGSSMSADGP-MNLYNA 136
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein
structure initiative eukaryotic initiation factor; 2.10A
{Leishmania major} SCOP: c.124.1.5
Length = 383
Score = 26.8 bits (60), Expect = 9.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 48 DVHICDGS-----EREYKELIDLMVKDKTLRPVPKYENCWLARTNPA-DV 91
DV G+ ERE E+ +V + + + + W NP D+
Sbjct: 303 DVKTASGNHVEIEEREPTEITTNLVTKQRVVADGPHLSIW----NPVFDI 348
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 26.8 bits (60), Expect = 9.7
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 173 VVGSMRIMTRIGT--PVLNLLDA 193
+VG+MR T + P NL +A
Sbjct: 111 MVGAMRPSTSMSADGP-FNLYNA 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.422
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,119,618
Number of extensions: 312246
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 18
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)