RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13078
         (325 letters)



>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 250

 Score =  360 bits (925), Expect = e-126
 Identities = 147/245 (60%), Positives = 181/245 (73%), Gaps = 3/245 (1%)

Query: 23  HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
            G + ++   ++ F++N  ELCQP  +HICDGSE E   L+  M ++  LR + KY+NCW
Sbjct: 8   QGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCW 67

Query: 83  LARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMK 142
           LA T+P DVAR+ESKT I TQE+ +TVP  K G+   LG W+S +D+E+A   RFPGCMK
Sbjct: 68  LALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMK 126

Query: 143 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALH 202
           GRTMYVIPFSMGP+GSPLSKIG+E+TDSPYVV SMRIMTR+GTPVL  L   + FVK LH
Sbjct: 127 GRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEALGDGE-FVKCLH 185

Query: 203 SVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTI 261
           SVG P+   K     WPC+PE T+I H P   EI+S+GSGYGGNSLLGKKCFALR+ S +
Sbjct: 186 SVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRL 245

Query: 262 AKREG 266
           AK EG
Sbjct: 246 AKEEG 250


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score =  114 bits (288), Expect = 5e-30
 Identities = 44/50 (88%), Positives = 50/50 (100%)

Query: 267 WLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
           WLAEHML+LGITNPEG+KKY+AAAFPSACGKTNLAM+NP+LPG+KVECVG
Sbjct: 1   WLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVG 50


>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 159

 Score = 27.3 bits (60), Expect = 1.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 50  HICDGSEREYKELIDLMVKDKTLRPVPKYENCWLAR 85
            + D +ER+  EL+     D T +PV K+++C LAR
Sbjct: 127 DLSDEAERDEYELLCP---DNTRKPVDKFKDCHLAR 159


>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 95

 Score = 25.9 bits (57), Expect = 2.7
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 277 ITNPEGQKKYIAAAFP 292
           + + E  K Y++ A P
Sbjct: 12  VRDSERYKDYVSTAKP 27


>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 120

 Score = 25.7 bits (56), Expect = 4.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 37  IDNCVELCQPSDVHICDGSEREYKELID 64
           I N       +++ I DGS  E+ E I 
Sbjct: 83  ITNVTIEVIGNEIPILDGSGWEFYEAIR 110


>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
           indiana virus [TaxId: 11277]}
          Length = 409

 Score = 25.6 bits (56), Expect = 9.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 113 KPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRT 145
             GV+   G W    D +     RFP C +G +
Sbjct: 226 HWGVRLPSGVWFEMADKDLFAAARFPECPEGSS 258


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,262,271
Number of extensions: 59751
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)