BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1308
(607 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 187/291 (64%), Gaps = 30/291 (10%)
Query: 269 RIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
R+VGQ+ AI ++ AI+R G D + P+ FLFLG +G+GKTELAK LA + D +E
Sbjct: 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF-DTEE 617
Query: 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVL 387
A IR+DM+EY EKH V++LIGAPPGY+G+++GGQLT+ +++ P +V+LFDE++KAHPDV
Sbjct: 618 AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVF 677
Query: 388 TVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSIS 447
+LLQ+ D+GRLTD G+T++ ++ + ++TSNL S I L+ ++G + +
Sbjct: 678 NILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLI----LEGLQKGWPYER------ 727
Query: 448 KSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507
+D V + +L++HF R EFL R++EIV F P +K ++ +V +L+
Sbjct: 728 --------------IRDEVFK-VLQQHF-RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLS 771
Query: 508 FWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLA 557
+ + +K I++ + LA+ GYD +GAR ++ ++R++ + LA
Sbjct: 772 YLRARLAEKR-ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 821
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 186/291 (63%), Gaps = 30/291 (10%)
Query: 269 RIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
R+VGQ+ AI ++ AI+R G D + P+ FLFLG +G+GKTELAK LA + D +E
Sbjct: 15 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF-DTEE 73
Query: 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVL 387
A IR+DM+EY EKH V++LIGAPPGY+G+++GGQLT+ +++ P +V+LFD ++KAHPDV
Sbjct: 74 AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVF 133
Query: 388 TVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSIS 447
+LLQ+ D+GRLTD G+T++ ++ + ++TSNL S I L+ ++G + +
Sbjct: 134 NILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLI----LEGLQKGWPYER------ 183
Query: 448 KSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507
+D V + +L++HF R EFL R++EIV F P +K ++ +V +L+
Sbjct: 184 --------------IRDEVFK-VLQQHF-RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLS 227
Query: 508 FWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLA 557
+ + +K I++ + LA+ GYD +GAR ++ ++R++ + LA
Sbjct: 228 YLRARLAEKR-ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 277
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 182/291 (62%), Gaps = 30/291 (10%)
Query: 269 RIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
R+VGQ+ AI ++ AI+R G D + P+ FLFLG +G+GKTELAK LA + D +E
Sbjct: 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF-DTEE 76
Query: 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVL 387
A IR+D +EY EKH V++LIGAPPGY+G+++GGQLT+ +++ P +V+LFD ++KAHPDV
Sbjct: 77 AXIRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVF 136
Query: 388 TVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSIS 447
+LLQ D+GRLTD G+T++ ++ + + TSNL S I L+ ++G + +
Sbjct: 137 NILLQXLDDGRLTDSHGRTVDFRNTVIIXTSNLGSPLI----LEGLQKGWPYER------ 186
Query: 448 KSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507
+D V + +L++HF R EFL R++EIV F P +K ++ +V + +
Sbjct: 187 --------------IRDEVFK-VLQQHF-RPEFLNRLDEIVVFRPLTKEQIRQIVEIQXS 230
Query: 508 FWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLA 557
+ + +K I++ + LA+ GYD +GAR ++ ++R++ + LA
Sbjct: 231 YLRARLAEKR-ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 58/317 (18%)
Query: 262 LEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFY 320
+E L R++GQ+ A+ ++ A++R G D P+ F+FLG +G+GKTELA+ LA
Sbjct: 485 MENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544
Query: 321 IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVD 380
I D+ E+ IR+DMSEY EKH + GGQLT+++++ P +VVL D ++
Sbjct: 545 IFGDE-ESMIRIDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIE 589
Query: 381 KAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFS 440
KAHPDV +LLQ+ ++GRLTD KG+T++ ++ I +MTSN+ ++E
Sbjct: 590 KAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE---------------- 633
Query: 441 KRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHT 500
KD V+ LKR F R EF+ RI+EI+ F K L
Sbjct: 634 ----------------------KDKVMGE-LKRAF-RPEFINRIDEIIVFHSLEKKHLTE 669
Query: 501 LVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAA 559
+V ++ K L + +++I + D + +G D+ YGAR ++ +++ V +L+
Sbjct: 670 IVSL-MSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEE 728
Query: 560 HEKSVIGKGSFVRLYVQ 576
+ I KG + L V+
Sbjct: 729 LLRGNIHKGQHIVLDVE 745
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 154/298 (51%), Gaps = 34/298 (11%)
Query: 262 LEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFY 320
L RLK + GQ+ AI ++ AIK G + P+ FLF G +G+GKTE+ QL+
Sbjct: 452 LGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511
Query: 321 IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVD 380
+ + +R DMSEY E+H V++LIGAPPGY+G D GG LT + K P+AV+L DE++
Sbjct: 512 LGIE----LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE 567
Query: 381 KAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFS 440
KAHPDV +LLQ+ D G LTD G+ + ++ + VMT+N E + ++ L
Sbjct: 568 KAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGL-------- 619
Query: 441 KRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHT 500
I + ++ I + F EF R++ I++F S +H
Sbjct: 620 -----IHQDNSTDAMEEIKKIFT--------------PEFRNRLDNIIWFDHLSTDVIHQ 660
Query: 501 LVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLA 557
+V + + + LD+ +++ + LA+ GYD GAR + ++ + LA
Sbjct: 661 VVDKFI-VELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLA 717
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN + G+TPLH+AA G ++ V VLL+AGA+ N
Sbjct: 6 LLEAARAGQDDEVRILMANGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A E + EVLLK + N G++ LH G+ E+VE+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----AKDKDGYTPLHLAAREGHLEIVEV 119
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQKYA 242
LLK+GAD +D G P D A D +I ++LQK A
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 84/160 (52%), Gaps = 15/160 (9%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN + G+TPLH+AA G ++ V VLL+AGA+ N
Sbjct: 6 LLEAARAGQDDEVRILMANGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A E + EVLLK + N G++ LH G+ E+VE+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----AKDKDGYTPLHLAAREGHLEIVEV 119
Query: 208 LLKSGADPTVKDNSGHIPSDYA-----EDANIKQILQKYA 242
LLK+GAD +D G P D A ED I ++LQK A
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLAIREGHED--IAEVLQKAA 157
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 79.7 bits (195), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G+TPLH+AA NG ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
DL +H AA + EVLLK + N N G + LH G+ E+VE+
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDND-----GHTPLHLAAKYGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQ 239
LLK GAD +D G D + D ++ +ILQ
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN R GWTPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D +H A + EVLLK + N GF+ LH G+ E+VE+
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVN-----ASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK+GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
F G++ LH G+ E+VE+LLK+GAD KD+ G P A +I++ + A
Sbjct: 45 FTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 247 DLQ 249
D+
Sbjct: 105 DVN 107
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+AAI G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D +H A + EVLLK + +N T+ GF+ LH AG+ E+VE+
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGAD----VNATDTY-GFTPLHLAADAGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN LG TPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A + EVLLK + N + GF+ LH G+ E+VE+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVN-----AKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 36/122 (29%)
Query: 127 AAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMT 186
AA G+ D VR+L+ GA+ N D
Sbjct: 21 AARAGQDDEVRILMANGADVNATD------------------------------------ 44
Query: 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
+LG + LH G+ E+VE+LLK GAD DN G P A D +I++ + A
Sbjct: 45 WLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 247 DL 248
D+
Sbjct: 105 DV 106
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN +GWTPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D +H A + EVLLK + N GF+ LH G+ E+VE+
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVN-----ANDHNGFTPLHLAANIGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 11/155 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN + G+TPLH+AA G ++ V VLL+AGA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A E + EVLLK + N G++ LH G+ E+VE+
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----AKDKDGYTPLHLAAREGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQ 239
LLK+GAD +D G D + D ++ +ILQ
Sbjct: 132 LLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN GWTPLH+AA NG ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGRDDEVRILMANGA-DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + A + EVLLK + N G + LH + G+ E+VE+
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVN-----ANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK+GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D+ + +H A + EVLLK + N V G + LH + G+ E+VE+
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-----DTWGDTPLHLAAIMGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ I N DVN G TPLH+AA++G ++ V VLL+ GA+ +
Sbjct: 18 LLEAARAGQDDEVRILIANGA-DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D+ F +H A + EVLLK + N +MT G + LH G+ E+VE+
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF---DMT--GSTPLHLAADEGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED 231
LLK GAD +D G D + D
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISID 155
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D+ + +H A + EVLLK + N V G + LH + G+ E+VE+
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-----DTWGDTPLHLAAIMGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+AA +G ++ V VLL+ GA+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 150 DLF--NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D+F +H A + EVLLK + N + + MT LH G E+VE+
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT-----PLHLAAKWGYLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN +GWTPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGRDDEVRILMANGA-DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A + EVLLK + N + N G + LH G+ E+VE+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVN-AKDDN----GITPLHLAANRGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYA---EDANIKQILQK 240
LLK GAD +D G D + + ++ +ILQK
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 36/127 (28%)
Query: 127 AAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMT 186
AA G+ D VR+L+ GA+ N D+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADV----------------------------------- 45
Query: 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
+G++ LH G+ E+VE+LLK+GAD D G P A +I++ + A
Sbjct: 46 -VGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA 104
Query: 247 DLQREKE 253
D+ + +
Sbjct: 105 DVNAKDD 111
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+ NG ++ + VLL+ A+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS 76
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A + EVLLK + N M + G++ LH G+ E+VE+
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVN-----AMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 39/119 (32%)
Query: 127 AAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMT 186
AA G+ D VR+L+ GA+ N D F
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWF---------------------------------- 46
Query: 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP---SDYAEDANIKQILQKYA 242
G + LH V G+ E++E+LLK AD D SG P + Y I ++L KY
Sbjct: 47 --GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
L AA G+ +K +EN D N G TPLH AA NG + V++LL GA+PN
Sbjct: 8 LIEAAENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 149 -GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFL-GFSALHYGVVAGNTEVVE 206
D +H A ++LL + +PN G + LHY G+ E+V+
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSK------GADPNAKDSDGRTPLHYAAENGHKEIVK 120
Query: 207 LLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
LLL GADP D+ G P D A + ++I++
Sbjct: 121 LLLSKGADPNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 36/121 (29%)
Query: 127 AAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMT 186
AA NG D V+ LLE GA+PN D
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSD---------------------------------- 36
Query: 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
G + LHY G+ E+V+LLL GADP KD+ G P YA + K+I++ K A
Sbjct: 37 --GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 247 D 247
D
Sbjct: 95 D 95
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA G E++ + N DVN G TPLH+AA NG+++ V VLL+ GA+ N
Sbjct: 10 LLEAAAAGQDDEVRILMANGA-DVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D +H A + + EVLLK + N G++ LH ++G E+VE+
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVN-----AYDRAGWTPLHLAALSGQLEIVEV 123
Query: 208 LLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAE 243
LLK GAD +D G A D +I Q + AE
Sbjct: 124 LLKHGADVNAQDALGLT----AFDISINQGQEDLAE 155
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA G + ++ ++N DVN G TPLH+AA +G ++ V VLL+ GA+ N
Sbjct: 43 LHLAAANGQLEIVEVLLKNGA-DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A ++ EVLLK + N LG +A + G ++ E+
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKHGADVN-----AQDALGLTAFDISINQGQEDLAEI 156
Query: 208 L 208
L
Sbjct: 157 L 157
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
+T A Y E+ + DVN GWTPLH+AA++G+++ V VLL+ GA+ N
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 148 LGD 150
D
Sbjct: 133 AQD 135
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 10/153 (6%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
L AA G+ +K +EN DVN G TPLH+AA NG + V++LL GA+PN
Sbjct: 8 LIEAAENGNKDRVKDLLENGA-DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 149 -GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNM-TFLGFSALHYGVVAGNTEVVE 206
D +H A ++LL + +PN G + LH G+ EVV+
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQ------GADPNAKDSDGKTPLHLAAENGHKEVVK 120
Query: 207 LLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
LLL GADP D+ G P D A + +++++
Sbjct: 121 LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247
G + LH G+ EVV+LLL GADP KD+ G P A + K++++ + AD
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+AA G + V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A + EVLLK + N G + LH G+ E+VE+
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVN-----AQDAYGLTPLHLAADRGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
LLK GAD +D G D + D ++ +ILQK
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED---ANIKQILQKYA 242
G + LH G+ E+VE+LLK GAD +D G P A D I ++L KY
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D + +H A + EVLLK + +N + T +G + LH G+ E+VE+
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLK----YGADVNADDT-IGSTPLHLAADTGHLEIVEV 131
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQ 239
LLK GAD +D G D + D ++ +ILQ
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N D N G TPLH+AA G ++ V VLL GA+ N
Sbjct: 6 LLEAARAGQDDEVRILMANGA-DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 150 DLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D T +H A+ + EVLLK + N G + L+ G+ E+VE+
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVN-----AKDATGITPLYLAAYWGHLEIVEV 119
Query: 208 LLKSGADPTVKDNSGHIPSDYAED---ANIKQILQ 239
LLK GAD +D G D + D ++ +ILQ
Sbjct: 120 LLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
L AA G+ +K IEN DVN G TPLH AA G + V++L+ GA+ N
Sbjct: 8 LIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 149 -GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D +H A E ++L+ + + N G + LHY G+ E+V+L
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVN-----AKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 208 LLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
L+ GAD D+ G P D A + ++I++
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G + LHY G+ E+V+LL+ GAD KD+ G P YA K+I++ K AD+
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 96
Query: 249 Q 249
Sbjct: 97 N 97
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
L AA G+ +K IEN DVN G TPLH AA NG + V++L+ GA+ N
Sbjct: 8 LIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 149 -GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D +H A ++L+ + + N G + LH+ G+ EVV+L
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVN-----AKDSDGRTPLHHAAENGHKEVVKL 121
Query: 208 LLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
L+ GAD D+ G P D A + +++++
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G + LH+ G+ EVV+LL+ GAD KD+ G P +A + K++++ K AD+
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 96
Query: 249 Q 249
Sbjct: 97 N 97
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G + K ++N K VN + TPLH AA G + V++LLE ANPNL
Sbjct: 51 LHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 150 DL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
+H A E + LL++E MT GF+ LH G V EL
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEAS-----QACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 208 LLKSGADPTVKDNSGHIP 225
LL+ A P +G P
Sbjct: 165 LLERDAHPNAAGKNGLTP 182
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
L AAR G +K +EN+ + N+ G TPLH+AA G V+ V LLE A+
Sbjct: 84 LHCAARIGHTNMVKLLLENNA-NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 149 -GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
F +H A K+ E+LL+R D + N G + LH V N ++V+L
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKN----GLTPLHVAVHHNNLDIVKL 197
Query: 208 LLKSGADPTVKDNSGHIPSDYAEDAN 233
LL G P +G+ P A N
Sbjct: 198 LLPRGGSPHSPAWNGYTPLHIAAKQN 223
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 82 CQSIKDLT-LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL 140
+S++ +T L AA+ G A E+ + + + + N+ + G TPLH+ A G V VL+
Sbjct: 240 AESVQGVTPLHLAAQEGHA-EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 141 EAG----ANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYG 196
+ G A +G + +H + + + LL+ + + N T LG+S LH
Sbjct: 299 KHGVMVDATTRMG--YTPLHVASHYGNIKLVKFLLQHQADVNA-----KTKLGYSPLHQA 351
Query: 197 VVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G+T++V LLLK+GA P + G P
Sbjct: 352 AQQGHTDIVTLLLKNGASPNEVSSDGTTP 380
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 121 WTPLHVAAINGKVDNVRVLLEAGANPNLGDLF--NTVHRTAAEKKMNPFEVLLKREDEFN 178
TPLHVA+ G + V+ LL+ GA+PN+ ++ +H A + LL+ + + N
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ T LH G+T +V+LLL++ A+P + +GH P
Sbjct: 75 AKAKDDQT-----PLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 77 LTLLE------CQSIKDLT-LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAI 129
L LLE C + K T L AA+YG + + +E N G TPLHVA
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVAVH 188
Query: 130 NGKVDNVRVLLEAGANPNLG--DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTF 187
+ +D V++LL G +P+ + + +H A + ++ LL+ N +
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-----ESV 243
Query: 188 LGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G + LH G+ E+V LLL A+ + + SG P
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 281
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 30/204 (14%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEF 177
G+TPLH+AA +V+ R LL+ G + N + +H A E +LL ++
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 178 NDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED-ANIKQ 236
N + N + G + LH G+ V ++L+K G G+ P A NIK
Sbjct: 272 N-LGNKS----GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK- 325
Query: 237 ILQKYAEKYADLQREKEAEERRKY-PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDD 295
L K+ ++ Q + A+ + Y PL Q Q+ +I++ +K NG + ++
Sbjct: 326 -LVKFLLQH---QADVNAKTKLGYSPLHQ------AAQQGHTDIVTLLLK---NGASPNE 372
Query: 296 HPLVFLFLGSSGIGKTELAKQLAF 319
+ S G +AK+L +
Sbjct: 373 -------VSSDGTTPLAIAKRLGY 389
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 7/108 (6%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEF 177
G TPLH+AA NG ++ V++LLEAGA+ N D +H A + ++LL+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 178 NDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
N + N G + LH G+ EVV+LLL++GAD KD +G P
Sbjct: 62 N-AKDKN----GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G + LH G+ EVV+LLL++GAD KD +G P A ++++ E AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 40/154 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN +G TPLH+AA+N ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D +G + LH + G+ E+VE+LL
Sbjct: 77 DA------------------------------------IGETPLHLVAMYGHLEIVEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
K GAD +D G D + D ++ +ILQK
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 40/154 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-- 74
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
ED F G + LH + G+ E+VE+LL
Sbjct: 75 -----------------------AEDNF-----------GITPLHLAAIRGHLEIVEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
K GAD +D G D + D ++ +ILQK
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
+F R G+A ++ +++N++ D+N G++PLH A G+ V +L+ GA N+
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 149 --GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE 206
GD +H A+ + + LL+ + + N V G LHY G +V E
Sbjct: 64 NRGD-DTPLHLAASHGHRDIVQKLLQYKADINAV-----NEHGNVPLHYACFWGQDQVAE 117
Query: 207 LLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
L+ +GA ++ + G +P D A+ A ++++L++ AEK
Sbjct: 118 DLVANGALVSICNKYGEMPVDKAK-APLRELLRERAEKMG 156
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
GFS LH+ G + VVE+L+ GA V + P A + I+QK + AD+
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 93
Query: 249 QREKE 253
E
Sbjct: 94 NAVNE 98
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
+F R G+A ++ +++N++ D+N G++PLH A G+ V +L+ GA N+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 149 --GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE 206
GD +H A+ + + LL+ + + N V G LHY G +V E
Sbjct: 69 NRGD-DTPLHLAASHGHRDIVQKLLQYKADINAV-----NEHGNVPLHYACFWGQDQVAE 122
Query: 207 LLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
L+ +GA ++ + G +P D A+ A ++++L++ AEK
Sbjct: 123 DLVANGALVSICNKYGEMPVDKAK-APLRELLRERAEKMG 161
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
GFS LH+ G + VVE+L+ GA V + P A + I+QK + AD+
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98
Query: 249 QREKE 253
E
Sbjct: 99 NAVNE 103
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 40/154 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A R G E++ + N DVN G TPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEATRAGQDDEVRILMANGA-DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D++ G + LH G+ E+VE+LL
Sbjct: 77 DIW------------------------------------GRTPLHLAATVGHLEIVEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
+ GAD +D G D + D ++ +ILQK
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G + LH G+ E+VE+LLK GAD D G P A +I++ E AD+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 249 QREKE 253
+ +
Sbjct: 107 NAQDK 111
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLG--WTPLHVAAINGKVDNVRVLLEAGANPN 147
L AAR G+ ++L + + L+VN G TPLH+AA +V V++LL+ GA+ +
Sbjct: 28 LLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 148 LGDLFNTV--HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
D V H + E+LLK N M F+ LH EV
Sbjct: 86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-----AMDLWQFTPLHEAASKNRVEVC 140
Query: 206 ELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAE 255
LLL GADPT+ + G D A +++ L + ++ LQ +EA+
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREAD 190
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 86 KDLTLFRAARYGSAKELKTFIENSKLDV-NMRHPLGW-TPLH--VAAINGKVDNV-RVLL 140
K +L +AAR ++K + L++ N + P T LH VA+++ K V +LL
Sbjct: 178 KGHSLLQAAREADLAKVKKTL---ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL 234
Query: 141 EAGANPNLG--DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVV 198
GAN N D +H A + EVL K + N + LG +ALH +
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-----ALDSLGQTALHRAAL 289
Query: 199 AGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQK 240
AG+ + LLL G+DP++ G + +A ++QIL +
Sbjct: 290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA-VQQILSE 330
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHP-----LGWTPLHVAAINGKVDNVRVLLEAGA 144
L AAR G E++ + N P LG +PLH+AA G VLL AG
Sbjct: 6 LLEAARAGQDDEVRILMANGA-------PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 145 NPNLGDLFN--TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNT 202
+ + + +H A+E N EVLLK + N L +ALH+ +
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-----AKDMLKMTALHWATEHNHQ 113
Query: 203 EVVELLLKSGAD 214
EVVELL+K GAD
Sbjct: 114 EVVELLIKYGAD 125
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 127 AAINGKVDNVRVLLEAGANPNLGDLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPN 184
AA G+ D VR+L+ GA P D T +H A + EVLL+ V
Sbjct: 9 AARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRA-----GVSRDA 62
Query: 185 MTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEK 244
T + + LH G+ +VE+LLK GAD KD +A + N +++++ +
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 245 YADLQREKE 253
AD+ + +
Sbjct: 123 GADVHTQSK 131
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 40/154 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A R G E++ + N DVN G TPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEATRAGQDDEVRILMANGA-DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D++ G + LH G+ E+VE+LL
Sbjct: 77 DIW------------------------------------GRTPLHLAATVGHLEIVEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
+ GAD +D G D + D ++ +ILQK
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G + LH G+ E+VE+LLK GAD +D G P A +I++ E AD+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 249 QREKE 253
+ +
Sbjct: 107 NAQDK 111
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 40/154 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A R G E++ + N DVN G TPLH+AA G ++ V VLL+ GA+ N
Sbjct: 18 LLEATRAGQDDEVRILMANGA-DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G + LH G+ E+VE+LL
Sbjct: 77 DSW------------------------------------GRTPLHLAATVGHLEIVEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
+ GAD +D G D + D ++ +ILQK
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G + LH G+ E+VE+LLK GAD D+ G P A +I++ E AD+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 249 QREKE 253
+ +
Sbjct: 107 NAQDK 111
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 40/154 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN + G TPL++A +G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D +GF+ LH G+ E+ E+LL
Sbjct: 77 DA------------------------------------IGFTPLHLAAFIGHLEIAEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYA---EDANIKQILQK 240
K GAD +D G D + + ++ +ILQK
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 83 QSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA 142
Q L++ + A G L T IE + +N G+TPL AA +G++ V LL+
Sbjct: 16 QGANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQN 74
Query: 143 GANPNL-GDLFNTVHRTAAEKKMNPF-EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAG 200
GA+P L G + A K ++LL + N+ + G + L Y V
Sbjct: 75 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY-----DWNGGTPLLYAVHGN 129
Query: 201 NTEVVELLLKSGADPTVKDNSGHIPSDYA 229
+ + V++LL+SGADPT++ +SG+ D A
Sbjct: 130 HVKCVKMLLESGADPTIETDSGYNSMDLA 158
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLG--WTPLHVAAINGKVDNVRVLLE 141
S D L AA+ G + +K + VN R G TPLH AA +V V LL+
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLC--TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 142 AGANPNLGDLFNTV--HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA 199
GA+ + D V H + E+L+K N F+ LH
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-----VADLWKFTPLHEAAAK 118
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233
G E+ +LLL+ GADPT K+ G+ P D +D +
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD 152
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLG--WTPLHVAAINGKVDNVRVLLE 141
S D L AA+ G + +K + VN R G TPLH AA +V V LL+
Sbjct: 10 SEADRQLLEAAKAGDVETVKKLC--TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 142 AGANPNLGDLFNTV--HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA 199
GA+ + D V H + E+L+K N F+ LH
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-----VADLWKFTPLHEAAAK 122
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233
G E+ +LLL+ GADPT K+ G+ P D +D +
Sbjct: 123 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD 156
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L++ + A G +LK + VN G+TPL A+ G+++ VR LLE GA+P+
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 148 L--GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
+ + + + + + +LL+R+ + N + + N G + L Y V + + V
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWN----GGTPLLYAVRGNHVKCV 118
Query: 206 ELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
E LL GAD T + +SG+ P D A +++ Q
Sbjct: 119 EALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 40/154 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ N DVN G TPLH+AA+ G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILTANGA-DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
NT G + LH A + E+VE+LL
Sbjct: 77 G--NT----------------------------------GRTPLHLAAWADHLEIVEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
K GAD +D G D + D ++ +ILQK
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
+ G + LH + G+ E+VE+LLK+GAD N+G P A A+ +I++ + A
Sbjct: 45 YWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Query: 247 DLQREKE 253
D+ + +
Sbjct: 105 DVNAQDK 111
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLG--WTPLHVAAINGKVDNVRVLLE 141
S D L AA+ G + +K + VN R G TPLH AA +V V LL+
Sbjct: 8 SEADRQLLEAAKAGDVETVKKLC--TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 142 AGANPNLGDLFNTV--HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA 199
GA+ + D V H + E+L+K N F+ LH
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-----VADLWKFTPLHEAAAK 120
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233
G E+ +LLL+ GADPT K+ G+ P D +D +
Sbjct: 121 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD 154
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 7/154 (4%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L++ + A G +LK + VN G+TPL A+ G+++ VR LLE GA+P+
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 148 L--GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
+ + + + + + +LL+R+ + N + + N G + L Y V + + V
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWN----GGTPLLYAVHGNHVKCV 118
Query: 206 ELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
E LL GAD T + +SG+ P D A +++ Q
Sbjct: 119 EALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEF 177
G T LH+A+I G + +V LL+ G++PN+ D + +H + E+LL+ +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 178 NDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237
N + S LH G+ ++V+LLL GA + G P DY +D ++K +
Sbjct: 70 N-----TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124
Query: 238 L 238
L
Sbjct: 125 L 125
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 181 LNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
++P G + LH + G+ VE LL++G+DP VKD++G P
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP 46
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 8/144 (5%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L++ + A G L T IE + +N G+TPL AA +G++ V LL+ GA+P
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 148 L-GDLFNTVHRTAAEKKMNPF-EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
L G + A K ++LL + N+ + G + L Y V + + V
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE-----YDWNGGTPLLYAVHGNHVKCV 118
Query: 206 ELLLKSGADPTVKDNSGHIPSDYA 229
++LL+SGADPT++ +SG+ D A
Sbjct: 119 KMLLESGADPTIETDSGYNSMDLA 142
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 8/144 (5%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L++ + A G L T IE + +N G+TPL AA +G++ V LL+ GA+P
Sbjct: 3 LSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 148 L-GDLFNTVHRTAAEKKMNPF-EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
L G + A K ++LL + N+ + G + L Y V + + V
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE-----YDWNGGTPLLYAVHGNHVKCV 116
Query: 206 ELLLKSGADPTVKDNSGHIPSDYA 229
++LL+SGADPT++ +SG+ D A
Sbjct: 117 KMLLESGADPTIETDSGYNSMDLA 140
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
L AA+ G + ++ + N ++DVN + GWTP+ A VD V++LL G++ N+
Sbjct: 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Query: 149 GDLFNTV--HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE 206
D + H A ++ E+LL + + + V G S LH + V
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV-----NIHGDSPLHIAARENRYDCVV 194
Query: 207 LLLKSGADPTVKDNSGHIP 225
L L +D T+K+ G P
Sbjct: 195 LFLSRDSDVTLKNKEGETP 213
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 111 LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG--DLFNTVHRTAAEKKMNPFE 168
++ M H +PLH AA G VD +L++AGAN + D + A + +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 169 VLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG-ADPTVKDNSGHIPSD 227
L+K +++P G + LH G+ EVV+ LL +G D +D+ G P
Sbjct: 62 YLIKA----GALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 228 YA 229
+A
Sbjct: 117 WA 118
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN + G+TPLH+AA G ++ V VLL+AGA+ N
Sbjct: 6 LLEAARAGQDDEVRILMANGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 150 DLF 152
D F
Sbjct: 65 DKF 67
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED---ANIKQILQKYA 242
G++ LH G+ E+VE+LLK+GAD +D G D + D ++ +ILQK A
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 66/154 (42%), Gaps = 40/154 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN G TPLH+AA ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D ND G + LH + G+ E+VE+LL
Sbjct: 77 D---------------------------ND---------GSTPLHLAALFGHLEIVEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYAED---ANIKQILQK 240
K GAD +D G D + D ++ +ILQK
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
L + + A++ + S L VN+ G +PLHVAA++G+ D + +LL+ GAN
Sbjct: 56 LCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR 115
Query: 149 -GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFL-GFSALHYGVVAGNTEVVE 206
D +H + + LL + PN L G + L Y G+ E+V
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAK------PNKKDLSGNTPLIYACSGGHHELVA 169
Query: 207 LLLKSGADPTVKDNSG 222
LLL+ GA +N G
Sbjct: 170 LLLQHGASINASNNKG 185
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DV + G TPLH+AA NG ++ V++LLEAGA+ N
Sbjct: 10 LLEAARAGQDDEVRILMANGA-DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 150 DLF 152
D F
Sbjct: 69 DKF 71
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED---ANIKQILQ 239
G + LH G+ EVV+LLL++GAD +D G D + D ++ +ILQ
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 11/183 (6%)
Query: 101 ELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN-LGDLFNTVHRTA 159
E+ F+ + VN + GW+PLH+AA G+ + V+ LL GA+ N + T A
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 160 AEKKMNPFEVLLKREDEFNDVLNPNMT-FLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
A K + V+L NP+ +A+H GN ++V +LL A ++
Sbjct: 114 ASKNRHEIAVML-----LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 219 DNSGHIPSDYAED----ANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQE 274
D G+ P A D K ++ + A Y + + EK + K L LK G+E
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228
Query: 275 SAI 277
+++
Sbjct: 229 ASM 231
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 191 SALHYGVVAGNTEVVELLLKSGADPTVKDNSG----HIPSDYAEDANIKQILQKYA 242
+ALH+ AG+TE+VE LL+ G KD++G HI + D +K +L K A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G TPLH+AA NG ++ V++LLEAGA+ N A +K
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-----------AKDKN---------------- 34
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G + LH G+ EVV+LLL++GAD KD +G P
Sbjct: 35 ---------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 37/124 (29%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G + +K +E + DVN + G TPLH+AA NG ++ V++LLEAGA+ N
Sbjct: 6 LHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-- 62
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
A +K G + LH G+ EVV+LLL
Sbjct: 63 ---------AKDKN-------------------------GRTPLHLAARNGHLEVVKLLL 88
Query: 210 KSGA 213
++GA
Sbjct: 89 EAGA 92
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G + LH G+ EVV+LLL++GAD KD +G P A ++++ E AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 47/168 (27%)
Query: 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG 143
SI D A G + L ++++ D+N + G L AA G +DNV++LLE G
Sbjct: 70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Query: 144 ANPNLGDLFNTVHRTAAEKKMNPFEVLLKRED-EF-NDVLNPNMTFLGFSAL--HYGVVA 199
RED +F ND G++AL G+
Sbjct: 130 -----------------------------REDIDFQND--------FGYTALIEAVGLRE 152
Query: 200 GNT---EVVELLLKSGADPTVKDNSGHIPSDYAED---ANIKQILQKY 241
GN ++V+LL+++GAD ++KDNSG DYA I +IL +Y
Sbjct: 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 11/183 (6%)
Query: 101 ELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN-LGDLFNTVHRTA 159
E+ F+ + VN + GW+PLH+AA G + V+ LL GA+ N + T A
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 160 AEKKMNPFEVLLKREDEFNDVLNPNMT-FLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
A K + V+L NP+ +A+H GN ++V +LL A ++
Sbjct: 114 ASKNRHEIAVML-----LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
Query: 219 DNSGHIPSDYAED----ANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQE 274
D G+ P A D K ++ + A Y + + EK + K L LK G+E
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228
Query: 275 SAI 277
+++
Sbjct: 229 ASM 231
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 191 SALHYGVVAGNTEVVELLLKSGADPTVKDNSG----HIPSDYAEDANIKQILQKYA 242
+ALH+ AG+TE+VE LL+ G KD++G HI + D +K +L K A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 101 ELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN-LGDLFNTVHRTA 159
E+ F+ + VN + GW+PLH+AA G+ + V+ LL GA N + T A
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 114
Query: 160 AEKKMNPFEVLLKREDEFNDVLNPNMT-FLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
A K + V+L NP+ +A+H GN +++ +LL A ++
Sbjct: 115 ASKNRHEIAVML-----LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 169
Query: 219 DNSGHIPSDYAED----ANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVG 272
D G+ P A D K ++ + A Y + + EK + K L LK + G
Sbjct: 170 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVEG 227
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 191 SALHYGVVAGNTEVVELLLKSGADPTVKDNSG----HIPSDYAEDANIKQILQKYAE 243
+ALH+ AG+TE+VE LL+ G KD++G HI + D +K +L K A+
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 101 ELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN-LGDLFNTVHRTA 159
E+ F+ + VN + GW+PLH+AA G+ + V+ LL GA N + T A
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 113
Query: 160 AEKKMNPFEVLLKREDEFNDVLNPNMT-FLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
A K + V+L NP+ +A+H GN +++ +LL A ++
Sbjct: 114 ASKNRHEIAVML-----LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 168
Query: 219 DNSGHIPSDYAED----ANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVG 272
D G+ P A D K ++ + A Y + + EK + K L LK + G
Sbjct: 169 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVEG 226
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 191 SALHYGVVAGNTEVVELLLKSGADPTVKDNSG----HIPSDYAEDANIKQILQKYAE 243
+ALH+ AG+TE+VE LL+ G KD++G HI + D +K +L K A+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DV + G TPLH+AA NG ++ V++LLEAGA+
Sbjct: 28 LLEAARAGQDDEVRILMANGA-DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 150 DLFN 153
D F
Sbjct: 87 DKFG 90
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED---ANIKQILQ 239
G + LH G+ EVV+LLL++GAD +D G D + D ++ +ILQ
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 43/106 (40%), Gaps = 35/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G TPLHVA I+ + VR+L +AGA+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGAD---------------------------------- 183
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
LN G + LH V A V+ELLLK+GADPT + G P
Sbjct: 184 -LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHP-LGWTPLHVAAINGKVDNVRV 138
LE ++ T A E+ + ++ D+N P G TPLH+A + +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 139 LLEAGANPN 147
LL+AGA+P
Sbjct: 211 LLKAGADPT 219
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 43/106 (40%), Gaps = 35/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G TPLHVA I+ + VR+L +AGA+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGAD---------------------------------- 183
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
LN G + LH V A V+ELLLK+GADPT + G P
Sbjct: 184 -LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHP-LGWTPLHVAAINGKVDNVRV 138
LE ++ T A E+ + ++ D+N P G TPLH+A + +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 139 LLEAGANPN 147
LL+AGA+P
Sbjct: 211 LLKAGADPT 219
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA----N 145
L AA+ + L ++ +V+ R +G T LH+AA+ ++ VL+EA
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 146 PNLGDLF---NTVHRTAAEKKMNPFEVLLKREDEFNDVLNP--------NMTFLGFSALH 194
P +L+ +H + +N LL R + N+ + G L
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 195 YGVVAGNTEVVELLLKSGADPTVKDNSG 222
+ G+ E+V LL++ GAD +D+ G
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLG 154
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 13/189 (6%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
T A + E+ + + D +R G TPLH+A G + +V VL ++ P+L
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 149 GDLF--------NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAG 200
+ +H + + E+L+ + N N G +ALH V
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN----GRTALHLAVDLQ 162
Query: 201 NTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAE-KYADLQREKEAEERRK 259
N ++V LLLK GAD G+ P +I Q+ + +LQ E+E+
Sbjct: 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222
Query: 260 YPLEQRLKD 268
Y E +
Sbjct: 223 YDTESEFTE 231
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL-FNT-VHRTAAEKKMNPFEVL 170
+N ++ L TPLH+A I + + LL AG +P L D NT +H + + VL
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 171 LKR--EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214
+ + +L + G + LH + G +VELL+ GAD
Sbjct: 98 TQSCTTPHLHSILKAT-NYNGHTCLHLASIHGYLGIVELLVSLGAD 142
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 184 NMTFLGF------SALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
++ FL F + LH V+ E+ E LL +G DP ++D G+ P
Sbjct: 34 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG--------- 143
AAR G E++ IE + +++ G T LH+A G VD + L G
Sbjct: 27 AARKGQTDEVRRLIETG-VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ 85
Query: 144 ------ANPNLGDLFNTVHRTAAEKKMNPFEVLLKR--EDEFNDVLNPNMTFLGFSALHY 195
N DL + A E+ P E LL E E N++ + G +ALH+
Sbjct: 86 KPIHLAVXANKTDLVVALVEGAKERGQXP-ESLLNECDEREVNEIGSHVKHCKGQTALHW 144
Query: 196 GVVAGNT--EVVELLLKSGADPTVKDNSGHIP 225
V G E +++L++ GA PT KD + P
Sbjct: 145 CVGLGPEYLEXIKILVQLGASPTAKDKADETP 176
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L AA+ G A+E+K + DVN R G TPLH+AA NG + V++LL GA+ N
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 36/129 (27%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G TPLH AA NG + V+ LL GA+ N A K N
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVN-----------ARSKDGN-------------- 43
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
+ LH G+ E+V+LLL GAD + G+ P A+ +I++
Sbjct: 44 -----------TPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK 92
Query: 240 KYAEKYADL 248
K AD+
Sbjct: 93 LLDAKGADV 101
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L AA+ G A+ +K + DVN R G TP H+A NG + V++L GA+ N
Sbjct: 46 LHLAAKNGHAEIVKLLLAKGA-DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 86 KDLTLFRAARYGSAKEL-KTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA 144
+++TL A + +L K +I + + L TPLH A G + V L++ GA
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 145 NPNL--GDLFNTVHRTAA---------------------EKKMNPFEVLLKREDE----- 176
+P+L G+ + +H A + M P R
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 177 ----FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230
FN +N + +ALH+ V+AGNT V+ LLL++GA+ ++ G D A+
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL- 148
+ +A +YG + + +E + DV T LH AAIN ++D V+ + GA +
Sbjct: 13 IVKATQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 149 -GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
GDL +T A + V L + +++ G S +H G+T +V
Sbjct: 72 GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE----GCSCIHLAAQFGHTSIVAY 127
Query: 208 LLKSGADPTVKDNSGHIPSDYA 229
L+ G D + D +G P +A
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWA 149
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
L AA G + LK I+ ++ DVN++ GWTPLH AA GK + R+L+E NL
Sbjct: 202 ALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-----NL 255
Query: 149 GDL--FNTVHRTA 159
D+ N V +TA
Sbjct: 256 CDMEAVNKVGQTA 268
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 41/196 (20%)
Query: 68 LFASACSLA-----LTLLE------CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMR 116
+F +ACS L LLE ++ LT A ++ F+ + ++N
Sbjct: 43 VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102
Query: 117 HPLGWTPLHVAAINGKVDNVRVLLEAGANPNL----GDL--------------FNTVHRT 158
GW PLH AA G +D L+ GA+ GD N V+R
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 159 AAEKKMNPFE---VLLKREDEF------NDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + E ++L+ ++ NDV + G +ALH G TEV++LL+
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS---GGTALHVAAAKGYTEVLKLLI 219
Query: 210 KSGADPTVKDNSGHIP 225
++ D +KD G P
Sbjct: 220 QARYDVNIKDYDGWTP 235
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 39/173 (22%)
Query: 87 DLTLFRAA-RYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN 145
D +F AA G +E+ +E D+N + G T LH A I+ VD V+ L+E GAN
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 146 PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
N D N+ G+ LH G ++
Sbjct: 99 INQPD---------------------------NE---------GWIPLHAAASCGYLDIA 122
Query: 206 ELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA-DLQREKEAEER 257
E L+ GA ++ G P D AE+ ++++LQ + D++ ++ EER
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 124 LHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKM----NPFEVLLKREDEFND 179
L AA G+V+ VR LLEAGANPN N+ R + M E+LL E N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAP---NSYGRRPIQVMMMGSARVAELLLLHGAEPNC 72
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED 231
+T +H G + + +L ++GA V+D G +P D AE+
Sbjct: 73 ADPATLT----RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 163 KMNPFEVLLKR--EDEFN-------DVLNPNMTF-LGFSALHYGVVAGNTEVVELLLKSG 212
K NP +LL E EF+ +V +P++ G +ALH V AG+TE+V+ L++ G
Sbjct: 34 KFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 213 ADPTVKDNSGHIPSDYAEDANIKQILQ--------KYAEKYADLQ 249
+ D+ G P A N Q+ + +A Y+D+Q
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ 138
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA 144
+T A E+ F+ ++VN GWTPLH AA V + L+E+GA
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
T A + E+ + + D +R G TPLH+A G + +V VL ++ P+L
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 149 GDLF--------NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAG 200
+ +H + + E+L+ + N N G +ALH V
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN----GRTALHLAVDLQ 159
Query: 201 NTEVVELLLKSGADPTVKDNSGHIP 225
N ++V LLLK GAD G+ P
Sbjct: 160 NPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL-FNT-VHRTAAEKKMNPFEVL 170
+N ++ L TPLH+A I + + LL AG +P L D NT +H + + VL
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 171 LKR--EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214
+ + +L + G + LH + G +VELL+ GAD
Sbjct: 95 TQSCTTPHLHSILKAT-NYNGHTCLHLASIHGYLGIVELLVSLGAD 139
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 184 NMTFLGF------SALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229
++ FL F + LH V+ E+ E LL +G DP ++D G+ P A
Sbjct: 31 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 82
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 121 WTPLHVAAINGKVDNVRVLLEAGANPNL--GDLFNTVHRTAAEKKMNPFEVLLKREDEFN 178
W+P+H AAI+G ++R L+ G N+ D + +H ++ ++LLK + N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGA 213
V T + L V+G+ + V LLL+ GA
Sbjct: 64 GV-----TADWHTPLFNACVSGSWDCVNLLLQHGA 93
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 90 LFRAARYGSAKELKTFIE-NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
+ AAR G + + + I +D + H LG TPL++A N + V+ LLE+GA+ N
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISH-LG-TPLYLACENQQRACVKKLLESGADVNQ 162
Query: 149 G----DLFNTVHRTAAEK 162
G + V RTA+E+
Sbjct: 163 GKGQDSPLHAVARTASEE 180
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGAN--PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
TPL A ++G D V +LL+ GA+ P DL + +H A + L+ +
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIA----YGG 125
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
++ ++ LG + L+ V+ LL+SGAD V G +D+ + + +
Sbjct: 126 NIDHKISHLG-TPLYLACENQQRACVKKLLESGAD--VNQGKG-------QDSPLHAVAR 175
Query: 240 KYAEKYADL-------QREKEAEERRKYPL 262
+E+ A L + K AE +R L
Sbjct: 176 TASEELACLLMDFGADTQAKNAEGKRPVEL 205
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 29/130 (22%)
Query: 266 LKDRIVGQESAINIISAAI----KRKENGWTDDDHPLV---FLFLGSSGIGKTELAKQLA 318
L D ++GQE A +++ A+ KR NG T + L L +G +G GKT LA+ LA
Sbjct: 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72
Query: 319 FYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC-------PN 371
+ F D + E GY+G D + K L+KC
Sbjct: 73 RLLDV----PFTMADATTLTEA-----------GYVGEDVENIIQKLLQKCDYDVQKAQR 117
Query: 372 AVVLFDEVDK 381
+V D++DK
Sbjct: 118 GIVYIDQIDK 127
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 29/130 (22%)
Query: 266 LKDRIVGQESAINIISAAI----KRKENGWTDDDHPLV---FLFLGSSGIGKTELAKQLA 318
L D ++GQE A +++ A+ KR NG T + L L +G +G GKT LA+ LA
Sbjct: 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72
Query: 319 FYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC-------PN 371
+ F D + E GY+G D + K L+KC
Sbjct: 73 RLLDV----PFTMADATTLTEA-----------GYVGEDVENIIQKLLQKCDYDVQKAQR 117
Query: 372 AVVLFDEVDK 381
+V D++DK
Sbjct: 118 GIVYIDQIDK 127
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 93 AARYGSAKELKTFIENS---KLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
A + S L+ ++++ LD+ R+ G T LHVA + V++LLE GA+ +
Sbjct: 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145
Query: 150 DLFNT----VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
D+ + +H ++ ++LL+ N + + G SALH G +V
Sbjct: 146 DIKSGRSPLIH-AVENNSLSMVQLLLQHGANVNAQM-----YSGSSALHSASGRGLLPLV 199
Query: 206 ELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
L++SGAD ++K+ P A + IL+ A + A
Sbjct: 200 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 12/159 (7%)
Query: 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF--NTVHRTAAEKKMNPFEVLLKREDE 176
L TPLH+A I VR+L+ AGA+P D H + LL
Sbjct: 45 LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104
Query: 177 FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKD-NSGHIPSDYAEDAN-- 233
L + G +ALH V E V+LLL+ GAD D SG P +A + N
Sbjct: 105 GTLDLEAR-NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163
Query: 234 -IKQILQKY-----AEKYADLQREKEAEERRKYPLEQRL 266
+ Q+L ++ A+ Y+ A R PL + L
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G++ LH V ++VELLL+ GADP ++ +G P A A ++L+ + K AD+
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF 152
AA GS K LK F+ DVN G+T AA+ GKV ++ L + GAN NL
Sbjct: 99 AAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157
Query: 153 N-----------TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN 201
T AAEK EVL DE +N +G +AL + +++ +
Sbjct: 158 KEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSD 214
Query: 202 TEVVE----LLLKSGADPTVKDNSGHIP 225
VE LLL GAD V+ G P
Sbjct: 215 DSDVEAITHLLLDHGADVNVRGERGKTP 242
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNL----GDLFNTVHRTAAEKKMNPFEVLLKRED 175
GWTPLH A + D V +LL GA+P L G + A K+ ++ L +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKL--LKLFLSKGA 116
Query: 176 EFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
+ N+ F GF+A V G + ++ L K GA+ ++
Sbjct: 117 DVNEC-----DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEV 169
D +R G TP +AAI G V +++ L GA+ N D F A K+ +
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 143
Query: 170 LLKREDEFN-----DVLNPNMTFLGFSALHYGVVAGNTEVVELLL-KSGADPTVKDNSGH 223
L KR N + G +AL G+ EV+++LL + GAD DN G
Sbjct: 144 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 203
Query: 224 IPSDYA----EDANIKQILQKYAEKYADLQREKEAEERRKYPL 262
+A +D++++ I + AD+ ER K PL
Sbjct: 204 NALIHALLSSDDSDVEAITHLLLDHGADVNVRG---ERGKTPL 243
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ--------K 240
G +ALH V AG+TE+V+ L++ G + D+ G P A N Q+ +
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 241 YAEKYADLQ 249
+A Y+D+Q
Sbjct: 130 FAMTYSDMQ 138
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA 144
+T A E+ F+ ++VN GWTPLH AA V + L+E+GA
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G++ LH V ++VELLL+ GADP ++ +G P A A ++L+ + K AD+
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF 152
AA GS K LK F+ DVN G+T AA+ GKV ++ L + GAN NL
Sbjct: 79 AAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 153 N-----------TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN 201
T AAEK EVL DE +N +G +AL + +++ +
Sbjct: 138 KEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSD 194
Query: 202 TEVVE----LLLKSGADPTVKDNSGHIP 225
VE LLL GAD V+ G P
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTP 222
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 15/160 (9%)
Query: 115 MRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLK 172
+R G TP +AAI G V +++ L GA+ N D F A K+ + L K
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 173 REDEFN-----DVLNPNMTFLGFSALHYGVVAGNTEVVELLL-KSGADPTVKDNSGHIPS 226
R N + G +AL G+ EV+++LL + GAD DN G
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Query: 227 DYA----EDANIKQILQKYAEKYADLQREKEAEERRKYPL 262
+A +D++++ I + AD+ ER K PL
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRG---ERGKTPL 223
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNL----GDLFNTVHRTAAEKKMNPFEVLLKRED 175
GWTPLH A + D V +LL GA+P L G + A K+ ++ L +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL--LKLFLSKGA 96
Query: 176 EFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
+ N+ F GF+A V G + ++ L K GA+ ++
Sbjct: 97 DVNEC-----DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 266 LKDRIVGQESAINIISAAIKRK------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAF 319
L I+GQ A ++ A++ + + + P L +G +G+GKTE+A++LA
Sbjct: 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA- 71
Query: 320 YIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEV 379
+ FI+++ +++ E V K + + L GG + + N +V DE+
Sbjct: 72 ---KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQ---NGIVFIDEI 125
Query: 380 DK 381
DK
Sbjct: 126 DK 127
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV----AKLIGAPPGYL 354
+ G G+GKT LAK +A + R F+R+ + +++ E+ +GA PG +
Sbjct: 110 ILCLAGPPGVGKTSLAKSIAKSLGRK----FVRISLGGVRDESEIRGHRRTYVGAMPGRI 165
Query: 355 --GHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD 385
G G+L N V L DE+DK D
Sbjct: 166 IQGMKKAGKL--------NPVFLLDEIDKMSSD 190
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 121 WTPLHVAAINGKVDNVRVLLEAGANPNL--GDLFNTVHRTAAEKKMNPFEVLLKREDEFN 178
W+P+H AAI+G ++R L+ G N+ D + +H ++ ++LLK + N
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGA 213
V T L F+A V+G+ + V LLL+ GA
Sbjct: 120 GVTADWHTPL-FNA----CVSGSWDCVNLLLQHGA 149
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 60 NTCMYNNLLFASACSLALTLLECQSIK---DLT--LFRAARYGSAKELKTFIE-NSKLDV 113
+T ++N + S + L L S++ DL + AAR G + + + I +D
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG----DLFNTVHRTAAEK 162
+ H LG TPL++A N + V+ LLE+GA+ N G + V RTA+E+
Sbjct: 186 KISH-LG-TPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEE 236
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGAN--PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
TPL A ++G D V +LL+ GA+ P DL + +H A + L+ +
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIA----YGG 181
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
++ ++ LG + L+ V+ LL+SGAD V G +D+ + +++
Sbjct: 182 NIDHKISHLG-TPLYLACENQQRACVKKLLESGAD--VNQGKG-------QDSPLHAVVR 231
Query: 240 KYAEKYADL-------QREKEAEERRK---YPLEQRLKDRIVGQESA 276
+E+ A L + K AE +R P E L + +E A
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGA 278
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 124 LHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKM----NPFEVLLKREDEFND 179
L AA G+V+ VR LLEAGA PN N+ R + M E+LL E N
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAP---NSYGRRPIQVMMMGSARVAELLLLHGAEPNC 72
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED 231
+T +H G + + +L ++GA V+D G +P D AE+
Sbjct: 73 ADPATLT----RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 124 LHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVL-- 181
L AA G+V+ VR LLEAGA+PN + F P +V++ + ++L
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGR----------RPIQVMMMGSAQVAELLLL 65
Query: 182 ---NPNMTFLG--FSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236
PN +H G + + +L ++GA V D G +P D AE+ +
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD 125
Query: 237 I 237
I
Sbjct: 126 I 126
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 99 AKELKTFIENSKLDVNMR-HP--LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN-- 153
A E+ +F+ + +VN+ +P GWTP H+A G ++ V+ L + P+L + N
Sbjct: 48 AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG 107
Query: 154 --TVHRTAAEKKMNPFEVLLKR------EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
+H +K + L++ +D+FN + LH G+ +++
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI-----------PLHRAASVGSLKLI 156
Query: 206 ELLLKSGADPT-VKDNSGHIPSDYA-----EDANIKQILQKYAEKYADLQREKEAE 255
ELL G +D G P +A DA + +++KY +Y DL K A+
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV-LLVEKYGAEY-DLVDNKGAK 210
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANP 146
+ L RAA GS K ++ K VN + GWTPL A G D +L+E GA
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Query: 147 NLGD 150
+L D
Sbjct: 202 DLVD 205
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 157 RTAAEKKMNPF------------EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEV 204
R A ++NP EV+ + E ND PN G +ALH + N +
Sbjct: 12 RKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE--GITALHNAICGANYSI 69
Query: 205 VELLLKSGADPTVKDNSGHIPSDYAEDAN 233
V+ L+ +GA+ D+ G P A N
Sbjct: 70 VDFLITAGANVNSPDSHGWTPLHCAASCN 98
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 99 AKELKTFIENSKLDVNMR-HP--LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN-- 153
A E+ +F+ + +VN+ +P GWTP H+A G ++ V+ L + P+L + N
Sbjct: 48 AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG 107
Query: 154 --TVHRTAAEKKMNPFEVLLKR------EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
+H +K + L++ +D+FN + LH G+ +++
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI-----------PLHRAASVGSLKLI 156
Query: 206 ELLLKSGADPT-VKDNSGHIPSDYA-----EDANIKQILQKYAEKYADLQREKEAE 255
ELL G +D G P +A DA + +++KY +Y DL K A+
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV-LLVEKYGAEY-DLVDNKGAK 210
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANP 146
+ L RAA GS K ++ K VN + GWTPL A G D +L+E GA
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Query: 147 NLGD 150
+L D
Sbjct: 202 DLVD 205
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 99 AKELKTFIENSKLDVNMR-HP--LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN-- 153
A E+ +F+ + +VN+ +P GWTP H+A G ++ V+ L + P+L + N
Sbjct: 48 AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG 107
Query: 154 --TVHRTAAEKKMNPFEVLLKR------EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
+H +K + L++ +D+FN + LH G+ +++
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI-----------PLHRAASVGSLKLI 156
Query: 206 ELLLKSGADPT-VKDNSGHIPSDYA-----EDANIKQILQKYAEKYADLQREKEAE 255
ELL G +D G P +A DA + +++KY +Y DL K A+
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV-LLVEKYGAEY-DLVDNKGAK 210
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANP 146
+ L RAA GS K ++ K VN + GWTPL A G D +L+E GA
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Query: 147 NLGD 150
+L D
Sbjct: 202 DLVD 205
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 111 LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVL 170
+DVN+R P G+TPL +A+ +G LE G N+ A ++ F
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGG------LETG---------NSEEEEDAPAVISDFIYQ 45
Query: 171 LKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230
L+ G +ALH ++ + LL++ AD ++DN G P A
Sbjct: 46 -------GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 231 DANIKQILQ 239
A+ + + Q
Sbjct: 99 SADAQGVFQ 107
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 31/137 (22%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN--TVHRTAAEKKMNPFEVLLKR---- 173
G T LH+AA + D + LLEA A+ N+ D +H + F++L++
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 174 --------------------EDEFNDVLNPNMTF-----LGFSALHYGVVAGNTEVVELL 208
E D++N + LG SALH+ N + +L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 209 LKSGADPTVKDNSGHIP 225
LK+GA+ +++N P
Sbjct: 177 LKNGANKDMQNNREETP 193
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 37/156 (23%)
Query: 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG 143
S+ D A + G E+K ++ + DVN G PLH AA G+++ + LL G
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 144 ANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTE 203
A+ N D + + L V G+
Sbjct: 64 ADINAPDKHH------------------------------------ITPLLSAVYEGHVS 87
Query: 204 VVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
V+LLL GAD TVK G + ++ IK +LQ
Sbjct: 88 CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNV-RVLLEAGANPN 147
L AARY + K +E S D N++ +G TPLH AA++ V ++L+ A
Sbjct: 28 ALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT-- 83
Query: 148 LGDLFNTVHRTAAEKKMNPFEVLLKR---EDEFNDVLNPNMTF-----LGFSALHYGVVA 199
DL +H P +L R E D++N + LG SALH+
Sbjct: 84 --DLDARMH-----DGTTPL-ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIP 225
N + +LLK+GA+ +++N P
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETP 161
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVL 181
TPL +AA G + +VLL+ AN ++ D + + R A+++M+ +++ DE+N V
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH--HDIVRLLDEYNLVR 217
Query: 182 NPNM 185
+P +
Sbjct: 218 SPQL 221
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
G +ALH ++ + LL++ AD ++DN G P A A+ + + Q
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 21/145 (14%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNV-RVLLEAGANPNL 148
L AARY + K +E S D N++ +G TPLH AA++ V ++L+ A
Sbjct: 61 LHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT--- 115
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKR---EDEFNDVLNPNMTF-----LGFSALHYGVVAG 200
DL +H P +L R E D++N + LG SALH+
Sbjct: 116 -DLDARMH-----DGTTPL-ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168
Query: 201 NTEVVELLLKSGADPTVKDNSGHIP 225
N + +LLK+GA+ +++N P
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETP 193
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 111 LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVL 170
+DVN+R P G+TPL +A+ +G LE G N+ A ++ F
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGG------LETG---------NSEEEEDAPAVISDFIYQ 45
Query: 171 LKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230
L+ G +ALH ++ + LL++ AD ++DN G P A
Sbjct: 46 -------GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 231 DANIKQILQ 239
A+ + + Q
Sbjct: 99 SADAQGVFQ 107
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 37/153 (24%)
Query: 87 DLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146
D A + G E+K ++ + DVN G PLH AA G+++ + LL GA+
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61
Query: 147 NLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE 206
N D + + L V G+ V+
Sbjct: 62 NAPDKHH------------------------------------ITPLLSAVYEGHVSCVK 85
Query: 207 LLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
LLL GAD TVK G + ++ IK +LQ
Sbjct: 86 LLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNV-RVLLEAGANPN 147
L AARY + K +E S D N++ +G TPLH AA++ V ++L+ A
Sbjct: 61 ALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT-- 116
Query: 148 LGDLFNTVHRTAAEKKMNPFEVLLKR---EDEFNDVLNPNMTF-----LGFSALHYGVVA 199
DL +H P +L R E D++N + LG SALH+
Sbjct: 117 --DLDARMH-----DGTTPL-ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 168
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIP 225
N + +LLK+GA+ +++N P
Sbjct: 169 NNVDAAVVLLKNGANKDMQNNREETP 194
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 111 LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVL 170
+DVN+R P G+TPL +A+ +G LE G N+ A ++ F
Sbjct: 2 MDVNVRGPDGFTPLMIASCSGGG------LETG---------NSEEEEDAPAVISDFIYQ 46
Query: 171 LKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230
L+ G +ALH ++ + LL++ AD ++DN G P A
Sbjct: 47 -------GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 231 DANIKQILQ 239
A+ + + Q
Sbjct: 100 SADAQGVFQ 108
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVL 181
TPL +AA G + +VLL+ AN ++ D + + R A+++M+ +++ DE+N V
Sbjct: 193 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH--HDIVRLLDEYNLVR 250
Query: 182 NPNM 185
+P +
Sbjct: 251 SPQL 254
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 21/146 (14%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNV-RVLLEAGANPN 147
L AARY + K +E S D ++ +G TPLH AA++ V ++LL A
Sbjct: 25 ALHLAARYSRSDAAKRLLEASA-DAXIQDNMGRTPLH-AAVSADAQGVFQILLRNRAT-- 80
Query: 148 LGDLFNTVHRTAAEKKMNPFEVLLKR---EDEFNDVLNPNMTF-----LGFSALHYGVVA 199
DL +H P +L R E D++N + LG SALH+
Sbjct: 81 --DLDARMH-----DGTTPL-ILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAV 132
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIP 225
N + +LLK+GA+ +++N P
Sbjct: 133 NNVDAAVVLLKNGANKDMQNNKEETP 158
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
G +ALH ++ + LL++ AD ++DN G P A A+ + + Q
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQ 72
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMN 165
TPL +AA G + +VLL+ AN ++ D + + R A+++M+
Sbjct: 157 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 200
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230
G +ALHY + N E ++LLL+ A + + SG P D A+
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
AA + LL RE D LN G +AL ++ G+T + LLK GA P V+
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNR----FGKTALQV-MMFGSTAIALELLKQGASPNVQ 70
Query: 219 DNSGHIPSDYAEDANIKQILQKYAEKYADL 248
D SG P A L+ E AD+
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADV 100
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD 150
N++ G +P+H AA G +D ++VL+E GA+ N+ D
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 104
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
AA + LL RE D LN G +AL ++ G+T + LLK GA P V+
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNR----FGKTALQV-MMFGSTAIALELLKQGASPNVQ 64
Query: 219 DNSGHIPSDYAEDANIKQILQKYAEKYADL 248
D SG P A L+ E AD+
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD 150
N++ G +P+H AA G +D ++VL+E GA+ N+ D
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 85 IKDLTLFR----AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL 140
+KD T F AAR G L+T +EN + DVN+ G PLH+AA G + V L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEN-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 141 EAGANPNLG 149
+ A+ N+G
Sbjct: 124 KHTAS-NVG 131
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 182 NPNMT-FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
NP++ GF+ +H AG + ++ LL++ AD ++DN G++P
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP 106
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQRE 251
GN E+ LL GA+P +KD +G A A LQ E AD+ E
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE 99
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 35/139 (25%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNT----VHRTAAEKKMNPFEVLLK-RE 174
G T LH+AA + D + LL+AGA+ N D NT +H A M F++LL+ R
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQD--NTGRTPLHAAVAADAMGVFQILLRNRA 108
Query: 175 DEFNDVLNPNMTFL----------------------------GFSALHYGVVAGNTEVVE 206
N ++ T L G +ALH+ NTE V
Sbjct: 109 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVN 168
Query: 207 LLLKSGADPTVKDNSGHIP 225
+LL A+ +D+ P
Sbjct: 169 ILLMHHANRDAQDDKDETP 187
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFN 178
+G TPL +AA+ G L+ G D+ N TA LL + E
Sbjct: 1 MGLTPLMIAAVRGGG------LDTGE-----DIENNEDSTA-----QVISDLLAQGAE-- 42
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQIL 238
LN M G ++LH + + LL +GAD +DN+G P A A+ +
Sbjct: 43 --LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVF 100
Query: 239 Q 239
Q
Sbjct: 101 Q 101
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 266 LKDRIVGQESAINIISAAIKRKENGWT---------DDDHPLVFLFLGSSGIGKTELAKQ 316
L I+GQ++A ++ A++ N W + P L +G +G+GKTE+A++
Sbjct: 12 LDKHIIGQDNAKRSVAIALR---NRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARR 68
Query: 317 LAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345
LA + FI+++ +++ E V K
Sbjct: 69 LAKLAN----APFIKVEATKFTEVGYVGK 93
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 266 LKDRIVGQESAINIISAAIKRKENGWT---------DDDHPLVFLFLGSSGIGKTELAKQ 316
L I+GQ++A ++ A++ N W + P L +G +G+GKTE+A++
Sbjct: 19 LDKHIIGQDNAKRSVAIALR---NRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARR 75
Query: 317 LAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345
LA + FI+++ +++ E V K
Sbjct: 76 LAKLAN----APFIKVEATKFTEVGYVGK 100
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 266 LKDRIVGQESAINIISAAIKRKENGWT---------DDDHPLVFLFLGSSGIGKTELAKQ 316
L I+GQ++A ++ A++ N W + P L +G +G+GKTE+A++
Sbjct: 13 LDKHIIGQDNAKRSVAIALR---NRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARR 69
Query: 317 LAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345
LA + FI+++ +++ E V K
Sbjct: 70 LAKLAN----APFIKVEATKFTEVGYVGK 94
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 182 NPNMT-FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
NP++ GF+ +H AG + ++ LL+ AD ++DN G++P
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP 106
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 85 IKDLTLFR----AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL 140
+KD T F AAR G L+T +E + DVN+ G PLH+AA G + V L+
Sbjct: 65 LKDRTGFAVIHDAARAGQLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 141 EAGANPNLG 149
+ A+ N+G
Sbjct: 124 KHTAS-NVG 131
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQRE 251
GN E+ LL GA+P +KD +G A A LQ E AD+ E
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE 99
>pdb|1JB1|A Chain A, Lactobacillus Casei Hprk/p Bound To Phosphate
Length = 205
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 283 AIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342
A +R +G D + L L G SG+GK+E A +L HR + R+D+ YQ+ +
Sbjct: 20 AERRSXHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADD--RVDV--YQQDEQ 75
Query: 343 VAKLIGAPPGYLGH 356
++GA P L H
Sbjct: 76 T--IVGAAPPILSH 87
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 22/90 (24%)
Query: 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYL 354
D P L G G GKT L K +A K AFIR++ SE+ K YL
Sbjct: 204 DPPRGVLLYGPPGTGKTMLVKAVA----NSTKAAFIRVNGSEFVHK------------YL 247
Query: 355 GHDDGGQLTK---RL-KKCPNAVVLFDEVD 380
G +G ++ + RL ++ +++ DEVD
Sbjct: 248 G--EGPRMVRDVFRLARENAPSIIFIDEVD 275
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 266 LKDRIVGQESAINIISAAIKRK------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAF 319
L I+GQ A ++ A++ + + + P L +G +G+GKTE+A++LA
Sbjct: 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72
Query: 320 YIHRDKKEAFIRLDMSEYQEKHEVAK 345
+ FI+++ +++ E V K
Sbjct: 73 LAN----APFIKVEATKFTEVGYVGK 94
>pdb|1KKL|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|B Chain B, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|C Chain C, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKM|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|B Chain B, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|C Chain C, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
Length = 205
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 283 AIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342
A +R +G D + L L G SG+GK+E A +L HR + R+D+ YQ+ +
Sbjct: 20 AERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADD--RVDV--YQQDEQ 75
Query: 343 VAKLIGAPPGYLGH 356
++GA P L H
Sbjct: 76 T--IVGAAPPILSH 87
>pdb|2QMH|A Chain A, Structure Of V267f Mutant HprkP
pdb|2QMH|B Chain B, Structure Of V267f Mutant HprkP
pdb|2QMH|C Chain C, Structure Of V267f Mutant HprkP
pdb|2QMH|D Chain D, Structure Of V267f Mutant HprkP
pdb|2QMH|E Chain E, Structure Of V267f Mutant HprkP
pdb|2QMH|F Chain F, Structure Of V267f Mutant HprkP
pdb|2QMH|G Chain G, Structure Of V267f Mutant HprkP
pdb|2QMH|H Chain H, Structure Of V267f Mutant HprkP
pdb|2QMH|I Chain I, Structure Of V267f Mutant HprkP
pdb|2QMH|J Chain J, Structure Of V267f Mutant HprkP
pdb|2QMH|K Chain K, Structure Of V267f Mutant HprkP
pdb|2QMH|L Chain L, Structure Of V267f Mutant HprkP
Length = 205
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 283 AIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342
A +R +G D + L L G SG+GK+E A +L HR + R+D+ YQ+ +
Sbjct: 20 AERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADD--RVDV--YQQDEQ 75
Query: 343 VAKLIGAPPGYLGH 356
++GA P L H
Sbjct: 76 T--IVGAAPPILSH 87
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 99 AKELKTFIENS---KLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTV 155
+K+LK+F+ + K DV+ G + + A + V V LL AGA NL + +
Sbjct: 12 SKQLKSFLSSKDTFKADVH-----GHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPL 66
Query: 156 HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLK 210
H+ A + ++LL F+ + + G +AL+Y V +GN + V+L +K
Sbjct: 67 HQAATLEDTKIVKILL-----FSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVK 116
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 193 LHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEK 244
LH +T++V++LL SG D + D+ G+ YA D+ Q ++ + +K
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKK 117
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 13/184 (7%)
Query: 100 KELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTA 159
K+ K+ +N N R TPL VA + G + + L+E D+ +
Sbjct: 15 KDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIW 74
Query: 160 AEK--KMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTV 217
A K ++ E LL + N F G + L + ++ G +E+ LL+ GA+
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVN-----TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
Query: 218 KDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAI 277
++ G P A +I++K E AD+ R L RI G++ I
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADIS------ARDLTGLTAEASARIFGRQEVI 183
Query: 278 NIIS 281
I +
Sbjct: 184 KIFT 187
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229
G + L+ GN +V+ LL GADP + + SG P D+
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
AA + LL RE D LN G +AL ++ G+ V LLK GA P V+
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNR----FGKTALQV-MMFGSPAVALELLKQGASPNVQ 72
Query: 219 DNSGHIPSDYAEDANIKQILQKYAEKYADL 248
D SG P A L+ E AD+
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADV 102
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD 150
N++ G +P+H AA G +D ++VL+E GA+ N D
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD 106
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218
AA + LL RE D LN G +AL ++ G+ V LLK GA P V+
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNR----FGKTALQV-MMFGSPAVALELLKQGASPNVQ 70
Query: 219 DNSGHIPSDYAEDANIKQILQKYAEKYADL 248
D SG P A L+ E AD+
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADV 100
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD 150
N++ G +P+H AA G +D ++VL+E GA+ N D
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD 104
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 182 NPNMT-FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
NP++ GF+ +H AG + ++ LL+ AD ++DN G++P
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQRE 251
GN E+ LL GA+P +KD +G A A LQ E AD+ E
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 85 IKDLTLFR----AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL 140
+KD T F AAR G L+T +E + DVN+ G PLH+AA G + V L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 141 EAGANPNLG 149
+ A+ N+G
Sbjct: 124 KHTAS-NVG 131
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 182 NPNMT-FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
NP++ GF+ +H AG + ++ LL+ AD ++DN G++P
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQRE 251
GN E+ LL GA+P +KD +G A A LQ E AD+ E
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 85 IKDLTLFR----AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL 140
+KD T F AAR G L+T +E + DVN+ G PLH+AA G + V L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 141 EAGANPNLG 149
+ A+ N+G
Sbjct: 124 KHTAS-NVG 131
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333
++ +F+G++G GKT L + Y+ + K A++ LD
Sbjct: 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 266 LKDRIVGQESAINIISAAIKRKENGWTDDD---------HPLVFLFLGSSGIGKTELAKQ 316
L I+GQ A ++ A++ N W P L +G +G+GKTE+A++
Sbjct: 13 LDQHIIGQADAKRAVAIALR---NRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARR 69
Query: 317 LAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345
LA + FI+++ +++ E V K
Sbjct: 70 LAKLAN----APFIKVEATKFTEVGYVGK 94
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN--TVHRTAAEKKMNPFEVLLKREDE 176
G T L V + G + R LL GANP+L D +H A ++ + LL+ + +
Sbjct: 37 FGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 177 FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGH 223
N N G LH G+ VVE L+K A N GH
Sbjct: 96 VNIEDNE-----GNLPLHLAAKEGHLRVVEFLVKHTA-----SNVGH 132
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQRE 251
GN E+ LL GA+P +KD +G+ A A LQ E AD+ E
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE 99
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
AAR G L+T +E + DVN+ G PLH+AA G + V L++ A+ N+G
Sbjct: 77 AARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-NVG 131
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 24/131 (18%)
Query: 129 INGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFL 188
+NG DN L++A TAA + E LL+ N
Sbjct: 229 VNGGQDNATPLIQA---------------TAANSLLA-CEFLLQNGANVNQA-----DSA 267
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA---EDANIKQILQKYAEKY 245
G LH+ + G+T + L LK GAD +D+ G P A +A+I +L+ +
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327
Query: 246 ADLQREKEAEE 256
A+ + + +E
Sbjct: 328 AEAAQGQAGDE 338
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 24/131 (18%)
Query: 129 INGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFL 188
+NG DN L++A TAA + E LL+ N
Sbjct: 229 VNGGQDNATPLIQA---------------TAANSLLA-CEFLLQNGANVNQA-----DSA 267
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA---EDANIKQILQKYAEKY 245
G LH+ + G+T + L LK GAD +D+ G P A +A+I +L+ +
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327
Query: 246 ADLQREKEAEE 256
A+ + + +E
Sbjct: 328 AEAAQGQAGDE 338
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLK 172
VN+ G T LH + + V+ LL++G + +R M LK
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK-----VDKQNRAGYSPIMLTALATLK 158
Query: 173 REDEFNDVL--------NPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSG 222
+D+ VL N + G +AL V G +VV+ LL AD V+D+ G
Sbjct: 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG 216
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 24/131 (18%)
Query: 129 INGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFL 188
+NG DN L++A TAA + E LL+ N
Sbjct: 229 VNGGQDNATPLIQA---------------TAANSLLA-CEFLLQNGANVNQA-----DSA 267
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA---EDANIKQILQKYAEKY 245
G LH+ + G+T + L LK GAD +D+ G P A +A+I +L+ +
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327
Query: 246 ADLQREKEAEE 256
A+ + + +E
Sbjct: 328 AEAAQGQAGDE 338
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 267 KDRIVG--QESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAF--YIH 322
++ +VG QE +++ +A K W + H + GS+G GKT +LA +
Sbjct: 78 EENVVGKLQEILCDMLPSADK-----WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLE 132
Query: 323 RDKKEAFIRLD---MSEYQEKHEVAKLIGAP 350
+ KK AFI D ++ ++ A+L+ AP
Sbjct: 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAP 163
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 188 LGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQK 240
LG +ALH G ++V+LLL GA +++ + D A +A +L+K
Sbjct: 139 LGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKK 191
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMN 165
TPL +AA G + +VLL+ AN ++ D + + R A+++M+
Sbjct: 83 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 126
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 293 DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG 352
D D+ + FL LG SG+GKT + Q Y FI +++EK V + G P G
Sbjct: 7 DYDYLIKFLALGDSGVGKTSVLYQ---YTDGKFNSKFITTVGIDFREKRVVYRANG-PDG 62
Query: 353 YLG 355
+G
Sbjct: 63 AVG 65
>pdb|1Y4T|A Chain A, Ferric Binding Protein From Campylobacter Jejuni
pdb|1Y4T|D Chain D, Ferric Binding Protein From Campylobacter Jejuni
pdb|3E13|X Chain X, Iron Reconstituted Ferric Binding Protein From
Campylobacter Jejuni
Length = 322
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 425 IAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRI 484
I H KE +KR I+ ++ +N+D++ ++++D + EF G I
Sbjct: 85 IPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYED----------LAKAEFKGEI 134
Query: 485 NEIVYFLPFSKSELHTLVC----RELNFWAKKALD 515
P+SK+ L +++ +E WAK L+
Sbjct: 135 VMRSATAPYSKTLLASIIANDGNKEAKAWAKGVLE 169
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIH-RDKKEAFIRLDM---SEYQEKHEVAKLIGAP 350
V L +G G GKT A +LA YI R K A I D + Y++ ++A+ I P
Sbjct: 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVP 156
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIH-RDKKEAFIRLDM---SEYQEKHEVAKLIGAP 350
V L +G G GKT A +LA YI R K A I D + Y++ ++A+ I P
Sbjct: 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVP 156
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 30/146 (20%)
Query: 266 LKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK 325
+KDRI + +A+ ++ A R++ G + L F G+ G GKT +A ++A +HR
Sbjct: 32 VKDRIR-ETAALLLVERA--RQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-- 86
Query: 326 KEAFIRLDMSEYQEKHEVA----KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDK 381
+ ++ H V+ L+G Y+GH + + LK+ V+ DE
Sbjct: 87 --------LGYVRKGHLVSVTRDDLVGQ---YIGH-TAPKTKEVLKRAMGGVLFIDEAYY 134
Query: 382 AH-PD--------VLTVLLQLFDEGR 398
+ PD + +LLQ+ + R
Sbjct: 135 LYRPDNERDYGQEAIEILLQVMENNR 160
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 30/146 (20%)
Query: 266 LKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK 325
+KDRI + +A+ ++ A R++ G + L F G+ G GKT +A ++A +HR
Sbjct: 39 VKDRIR-ETAALLLVERA--RQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-- 93
Query: 326 KEAFIRLDMSEYQEKHEVA----KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDK 381
+ ++ H V+ L+G Y+GH + + LK+ V+ DE
Sbjct: 94 --------LGYVRKGHLVSVTRDDLVGQ---YIGH-TAPKTKEVLKRAMGGVLFIDEAYY 141
Query: 382 AH-PD--------VLTVLLQLFDEGR 398
+ PD + +LLQ+ + R
Sbjct: 142 LYRPDNERDYGQEAIEILLQVMENNR 167
>pdb|3C7M|A Chain A, Crystal Structure Of Reduced Dsbl
pdb|3C7M|B Chain B, Crystal Structure Of Reduced Dsbl
Length = 195
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 282 AAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341
AA K+ W+D P F+ G G ++ + A KE ++ + +++ +
Sbjct: 102 AAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAAL------KEPAVQETLEKWKASY 155
Query: 342 EVAKLIGAP 350
+VAK+ G P
Sbjct: 156 DVAKIQGVP 164
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 291 WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFI 330
W + D P V G+ G+ + E AK LA +H K +I
Sbjct: 325 WNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYI 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,386,156
Number of Sequences: 62578
Number of extensions: 728927
Number of successful extensions: 2802
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2132
Number of HSP's gapped (non-prelim): 406
length of query: 607
length of database: 14,973,337
effective HSP length: 104
effective length of query: 503
effective length of database: 8,465,225
effective search space: 4258008175
effective search space used: 4258008175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)