BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1308
(607 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60649|CLPB_MOUSE Caseinolytic peptidase B protein homolog OS=Mus musculus GN=Clpb
PE=1 SV=1
Length = 677
Score = 610 bits (1572), Expect = e-173, Method: Compositional matrix adjust.
Identities = 314/558 (56%), Positives = 417/558 (74%), Gaps = 10/558 (1%)
Query: 25 YKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLEC-- 82
+ R + +++ Y T ++ S P + S N L A ++AL +++C
Sbjct: 71 WGRRGERTEIPYLTAASSERGPSPEETLPG-QDSWNGVPNKTGLGMWALAMAL-VVQCYS 128
Query: 83 --QSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL 140
S KD L AAR + +E++ + DVN RH LGWT L VA+I+ V+VLL
Sbjct: 129 KNPSNKDAALMEAARANNVQEVRRLLSEGA-DVNARHKLGWTALMVASISHNESVVQVLL 187
Query: 141 EAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAG 200
AGA+PNLGD F++V++TA E+ ++ EVL+ RED+FN+ LN +F G +ALHY V+A
Sbjct: 188 AAGADPNLGDEFSSVYKTANEQGVHSLEVLVTREDDFNNRLNHRASFKGCTALHYAVLAD 247
Query: 201 NTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKY 260
+ +V+ LL GA+P ++ GH P DYA + + ++L+ KY + QR++EAEERR++
Sbjct: 248 DYSIVKELLDRGANPLQRNEMGHTPLDYAREGEVMKLLKTSETKYMEKQRKREAEERRRF 307
Query: 261 PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFY 320
PLEQRLK+ I+GQESAI + AAI+RKENGW D++HPLVFLFLGSSGIGKTELAKQ A Y
Sbjct: 308 PLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKY 367
Query: 321 IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVD 380
+H+D K+ FIRLDMSE+QE+HEVAK IG+PPGY+GH++GGQLTK+LK+CPNAVVLFDEVD
Sbjct: 368 MHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVD 427
Query: 381 KAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFS 440
KAHPDVLT++LQLFDEGRLTDGKGKTI+CKDAIF+MTSN+AS+EIAQHALQLR+E E S
Sbjct: 428 KAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMS 487
Query: 441 KR--TPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498
+ ++ Q S+ +TIS++FK++V++PILK HFRRDEFLGRINEIVYFLPF SEL
Sbjct: 488 RNRIAENLGDVQMSD-KITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSEL 546
Query: 499 HTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAA 558
LV +ELNFWAK+A +HNI ++WD +V +L DGY+VHYGARSIKHEVER+VV+QLAA
Sbjct: 547 IQLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLAA 606
Query: 559 AHEKSVIGKGSFVRLYVQ 576
A+E+ ++ G +R+ V+
Sbjct: 607 AYEQDLLPGGCTLRITVE 624
>sp|Q5E9N5|CLPB_BOVIN Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2
SV=1
Length = 677
Score = 607 bits (1564), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/495 (61%), Positives = 390/495 (78%), Gaps = 4/495 (0%)
Query: 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG 143
S KD L AAR + +E+ + DVN RH LGWT L VAAIN V+VLL AG
Sbjct: 132 SSKDAALMEAARANNVQEVSRLLSEGA-DVNARHRLGWTALMVAAINRNDSVVQVLLAAG 190
Query: 144 ANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTE 203
A+PNLGD F++V++TA ++ ++ EVL+ RED+FN+ LN +F G +ALHY V+A +
Sbjct: 191 ADPNLGDDFSSVYKTAKDQGIHSLEVLVTREDDFNNRLNNRASFKGCTALHYAVLADDYR 250
Query: 204 VVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLE 263
V+ LL GA+P ++ GH P DYA + + ++L+ KY + QR++EAEERR++PLE
Sbjct: 251 TVKELLDGGANPLQRNEMGHTPLDYAREGEVMKLLRTSETKYQEKQRKREAEERRRFPLE 310
Query: 264 QRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR 323
QRLK+ I+GQESAI + AAI+RKENGW D++HPLVFLFLGSSGIGKTELAKQ A Y+H+
Sbjct: 311 QRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYMHK 370
Query: 324 DKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH 383
D K+ FIRLDMSE+QE+HEVAK IG+PPGY+GH++GGQLTK+LK+CPNAVVLFDEVDKAH
Sbjct: 371 DAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAH 430
Query: 384 PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKR- 442
PDVLT++LQLFDEGRLTDGKGKTI+CKDAIF+MTSN+AS+EIAQHALQLR+E E S+
Sbjct: 431 PDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNR 490
Query: 443 -TPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTL 501
++ Q S+ +TIS++FK++V++PILK HFRRDEFLGRINEIVYFLPF SEL L
Sbjct: 491 IAENLGDVQISD-KITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQL 549
Query: 502 VCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHE 561
V +ELNFWAK+A +HNI ++WD +V +L +GY+VHYGARSIKHEVER+VV+QLAAA+E
Sbjct: 550 VNKELNFWAKRAKQRHNITLLWDREVADVLVEGYNVHYGARSIKHEVERRVVNQLAAAYE 609
Query: 562 KSVIGKGSFVRLYVQ 576
+ ++ G +R+ V+
Sbjct: 610 QDLLPGGCTLRITVE 624
>sp|Q9WTT2|CLPB_RAT Caseinolytic peptidase B protein homolog OS=Rattus norvegicus
GN=Clpb PE=2 SV=1
Length = 677
Score = 605 bits (1559), Expect = e-172, Method: Compositional matrix adjust.
Identities = 313/557 (56%), Positives = 416/557 (74%), Gaps = 11/557 (1%)
Query: 26 KRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLEC--- 82
+RG + +++ Y T ++ S P + S N L A ++AL +++C
Sbjct: 73 RRG-ERTEIPYLTAASSGRGPSPEETLPG-QDSWNGVPNKAGLGMWALAMAL-VVQCYNK 129
Query: 83 -QSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLE 141
S KD L AAR + +E++ + DVN RH LGWT L VAAI+ V+VLL
Sbjct: 130 NPSNKDAALMEAARANNVQEVRRLLSEGA-DVNARHKLGWTALMVAAISHNESVVQVLLA 188
Query: 142 AGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN 201
AGA+PNLGD F++V++TA E+ ++ EVL+ RED+FN+ LN +F G +ALHY V+A +
Sbjct: 189 AGADPNLGDDFSSVYKTANEQGVHSLEVLVTREDDFNNRLNHRASFKGCTALHYAVLADD 248
Query: 202 TEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYP 261
+V+ LL GA+P ++ GH P DYA + + ++L+ KY + QR++EAEERR++P
Sbjct: 249 YSIVKELLGGGANPLQRNEMGHTPLDYAREGEVMKLLKTSETKYMEKQRKREAEERRRFP 308
Query: 262 LEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYI 321
LEQRL+ I+GQESAI + AAI+RKENGW D++HPLVFLFLGSSGIGKTELAKQ A Y+
Sbjct: 309 LEQRLEQHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYM 368
Query: 322 HRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDK 381
H+D K+ FIRLDMSE+QE+HEVAK IG+PPGY+GH++GGQLTK+LK+CPNAVVLFDEVDK
Sbjct: 369 HKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDK 428
Query: 382 AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSK 441
AHPDVLT++LQLFDEGRLTDGKGKTI+CKDAIF+MTSN+AS+EIAQHALQLR+E E S+
Sbjct: 429 AHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSR 488
Query: 442 R--TPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499
++ Q S+ +TIS++FK+++++PILK HFRRDEFLGRINEIVYFLPF SEL
Sbjct: 489 NRIAENLGDVQISD-KITISKNFKENMIRPILKAHFRRDEFLGRINEIVYFLPFCHSELI 547
Query: 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAA 559
LV +ELNFWAK+A +HNI ++WD +V +L DGY+V YGARSIKHEVER+VV+QLAAA
Sbjct: 548 QLVNKELNFWAKRAKQRHNITLLWDREVADVLVDGYNVQYGARSIKHEVERRVVNQLAAA 607
Query: 560 HEKSVIGKGSFVRLYVQ 576
+E+ ++ G +R+ V+
Sbjct: 608 YEQDLLPGGCTLRITVE 624
>sp|Q9H078|CLPB_HUMAN Caseinolytic peptidase B protein homolog OS=Homo sapiens GN=CLPB
PE=1 SV=1
Length = 707
Score = 593 bits (1529), Expect = e-168, Method: Compositional matrix adjust.
Identities = 307/541 (56%), Positives = 397/541 (73%), Gaps = 39/541 (7%)
Query: 73 CSLALTLL-----ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVA 127
C+LA L+ + S KD L AAR + +E+ + DVN +H LGWT L VA
Sbjct: 116 CALAAALVVHCYSKSPSNKDAALLEAARANNMQEVSRLLSEGA-DVNAKHRLGWTALMVA 174
Query: 128 AINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFE------------------- 168
AIN V+VLL AGA+PNLGD F++V++TA E+ ++ E
Sbjct: 175 AINRNNSVVQVLLAAGADPNLGDDFSSVYKTAKEQGIHSLEDGGQDGASRHITNQWTSAL 234
Query: 169 -----------VLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTV 217
VL+ RED+FN+ LN +F G +ALHY V+A + V+ LL GA+P
Sbjct: 235 EFRRWLGLPAGVLITREDDFNNRLNNRASFKGCTALHYAVLADDYRTVKELLDGGANPLQ 294
Query: 218 KDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAI 277
++ GH P DYA + + ++L+ KY + QR++EAEERR++PLEQRLK+ I+GQESAI
Sbjct: 295 RNEMGHTPLDYAREGEVMKLLRTSEAKYQEKQRKREAEERRRFPLEQRLKEHIIGQESAI 354
Query: 278 NIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337
+ AAI+RKENGW D++HPLVFLFLGSSGIGKTELAKQ A Y+H+D K+ FIRLDMSE+
Sbjct: 355 ATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEF 414
Query: 338 QEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEG 397
QE+HEVAK IG+PPGY+GH++GGQLTK+LK+CPNAVVLFDEVDKAHPDVLT++LQLFDEG
Sbjct: 415 QERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEG 474
Query: 398 RLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKR--TPSISKSQGSNLD 455
RLTDGKGKTI+CKDAIF+MTSN+AS+EIAQHALQLR+E E S+ ++ Q S+
Sbjct: 475 RLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQISD-K 533
Query: 456 VTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALD 515
+TIS++FK++V++PILK HFRRDEFLGRINEIVYFLPF SEL LV +ELNFWAK+A
Sbjct: 534 ITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQ 593
Query: 516 KHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYV 575
+HNI ++WD +V +L DGY+VHYGARSIKHEVER+VV+QLAAA+E+ ++ G +R+ V
Sbjct: 594 RHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLAAAYEQDLLPGGCTLRITV 653
Query: 576 Q 576
+
Sbjct: 654 E 654
>sp|Q6MD97|CLPB_PARUW Chaperone protein ClpB OS=Protochlamydia amoebophila (strain UWE25)
GN=clpB PE=3 SV=1
Length = 868
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 223/345 (64%), Gaps = 29/345 (8%)
Query: 234 IKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTD 293
I QI+ K+ E EAE R LE L+ R+VGQE A++ +S AI+R +G +D
Sbjct: 537 IAQIVSKWTGIPVHKMLEGEAE--RLLHLENELEKRVVGQEIAVSAVSEAIRRSRSGLSD 594
Query: 294 DDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG 352
+ P+ VFLFLG +G+GKTELAK LAF + ++ EA IRLDMSEY EKH V+KLIG+PPG
Sbjct: 595 PNRPMGVFLFLGPTGVGKTELAKALAFQLF-NQDEALIRLDMSEYMEKHTVSKLIGSPPG 653
Query: 353 YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDA 412
Y+G+++GGQLT+ L++ P AVVLFDE++KAHPDV +LLQ+FD+GRLTD KG+ + CK+A
Sbjct: 654 YIGYEEGGQLTEALRRRPYAVVLFDEIEKAHPDVFNILLQVFDDGRLTDSKGRVVNCKNA 713
Query: 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILK 472
+F+MTSN+ S+ + + Q QG D + V+ P++K
Sbjct: 714 LFIMTSNIGSDLLLEKMEQ----------------NKQGLAKDEIML------VLDPVIK 751
Query: 473 RHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532
+HF R EF+ R+++I+ F+P + ++ +V +LN AK+ D+ ++ ++W LA
Sbjct: 752 KHF-RPEFINRLDDILPFVPLREHDMEKIVVIQLNLLAKRLKDR-DVELMWTPQALAHLA 809
Query: 533 -DGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQ 576
+GYD H+GAR +K ++++V++QL+ A + I S ++L ++
Sbjct: 810 KEGYDPHFGARPLKRYIQQEVINQLSTAILEGKIPPHSHIKLELE 854
>sp|Q81GM5|CLPB_BACCR Chaperone protein ClpB OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=clpB PE=3 SV=1
Length = 866
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 189/306 (61%), Gaps = 27/306 (8%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E E + LEQ L +R++GQE A++++S A+ R G D + P+ F+FLG +G+GKT
Sbjct: 559 EGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKT 618
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
ELAK LA + D +E IR+DMSEY EKH V++LIGAPPGY+G+++GGQLT+ +++ P
Sbjct: 619 ELAKTLAQSLF-DSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPY 677
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+VVL DE++KAHP+V +LLQ+ D+GR+TD +G+T++ K+ + +MTSN+ S H L
Sbjct: 678 SVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGS----AHLL- 732
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
G D +I +D +V L+ HF R EFL R++EI+ F
Sbjct: 733 ------------------DGLEEDGSIKEESRD-LVMGQLRGHF-RPEFLNRVDEIILFK 772
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551
P + +E+ +V + + + D+H + D E ++ G+D YGAR +K V+RQ
Sbjct: 773 PLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQ 832
Query: 552 VVSQLA 557
V ++LA
Sbjct: 833 VETKLA 838
>sp|Q7MNK1|CLPB_VIBVY Chaperone protein ClpB OS=Vibrio vulnificus (strain YJ016) GN=clpB
PE=3 SV=1
Length = 857
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 195/307 (63%), Gaps = 31/307 (10%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
EAE+ + +E+ L R++GQ+ A+ +++ AI+R G +D + P+ FLFLG +G+GKT
Sbjct: 553 EAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKT 612
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
EL K LA ++ D ++A +R+DMSE+ EKH VA+L+GAPPGY+G+++GG LT+ +++ P
Sbjct: 613 ELCKTLANFMF-DSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPY 671
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++ ++ + +MTSNL S+ I ++
Sbjct: 672 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFAM 731
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
L +G K+ V++ ++ +HF R EFL R++E V F
Sbjct: 732 LDYQG-------------------------IKEQVME-VVTKHF-RPEFLNRVDETVVFH 764
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIKHEVER 550
P S+ + ++ +LN A + +++H + V D +E I G+D YGAR +K +++
Sbjct: 765 PLSQDHIKSIAAIQLNRLANR-MEEHGYQLEVSDKALELIAQVGFDPVYGARPLKRAIQQ 823
Query: 551 QVVSQLA 557
+ + LA
Sbjct: 824 SIENPLA 830
>sp|Q7CU92|CLPB_AGRT5 Chaperone protein ClpB OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=clpB PE=3 SV=2
Length = 874
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 226/431 (52%), Gaps = 53/431 (12%)
Query: 154 TVHRTAAEKKMNPFEVLLKREDEFNDVL---NPNMTFLGFSALHYGVVAGNTEVVELLLK 210
T A ++K+ L KR DE + L N F L YG++ G L K
Sbjct: 460 TARWQAEKQKLGHAADLKKRLDEARNELAIAQRNGQFQRAGELTYGIIPG-------LEK 512
Query: 211 SGADPTVKDNSG--HIPSDYAEDANIKQILQKYA----EKYADLQREKEAEERRKYPLEQ 264
A +D+SG + + NI ++ ++ +K + QREK +E
Sbjct: 513 ELAAAEARDSSGAGSMVQEVVTPDNIAHVVSRWTGIPVDKMLEGQREK------LLRMED 566
Query: 265 RLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHR 323
L +VGQ A+ +S A++R G D + P+ F+FLG +G+GKTEL K LA ++
Sbjct: 567 ELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKSLARFLF- 625
Query: 324 DKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH 383
D + A +RLDMSEY EKH VA+LIGAPPGY+G+++GG LT+ +++ P VVLFDE++KAH
Sbjct: 626 DDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEIEKAH 685
Query: 384 PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRT 443
PDV VLLQ+ D+GRLTDG+G+T++ K+ I +MTSNL S + Q
Sbjct: 686 PDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTSNLGSEFMTQ---------------- 729
Query: 444 PSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVC 503
G N DV R V ++ HF R EFL RI++I+ F + E+ +V
Sbjct: 730 ------MGDNDDVDSVREL----VMERVRSHF-RPEFLNRIDDIILFHRLRRDEMGAIVE 778
Query: 504 RELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEK 562
+L D+ I + D D + LA+ GYD YGAR +K +++ V +LA
Sbjct: 779 IQLKRLVSLLADR-KITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILG 837
Query: 563 SVIGKGSFVRL 573
I GS V++
Sbjct: 838 GEIPDGSRVKV 848
>sp|Q7AJA9|CLPB_CHLPN Chaperone protein ClpB OS=Chlamydia pneumoniae GN=clpB PE=3 SV=1
Length = 866
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 200/315 (63%), Gaps = 29/315 (9%)
Query: 269 RIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
R+VGQ A++ +S +I+ G D PL VFLFLG +G+GKTELAK LA + +K+E
Sbjct: 569 RVVGQPFAVSAVSDSIRAARVGLNDPQRPLGVFLFLGPTGVGKTELAKALADLLF-NKEE 627
Query: 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVL 387
A +R DMSEY EKH ++KLIG+ PGY+G+++GG L++ L++ P +VVLFDE++KA +VL
Sbjct: 628 AMVRFDMSEYMEKHSISKLIGSSPGYVGYEEGGSLSEALRRRPYSVVLFDEIEKADKEVL 687
Query: 388 TVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSIS 447
+LLQ+FD+G LTDGK + + CK+A+F+MTSN+ S E+A + K+G E +K
Sbjct: 688 NILLQVFDDGILTDGKKRKVNCKNALFIMTSNIGSPELADYC---SKKGSELTK------ 738
Query: 448 KSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507
+ +S VV P+LKR+ EF+ RI+EI+ F+P +K ++ +V ++
Sbjct: 739 -------EAILS------VVSPVLKRYL-SPEFMNRIDEILPFVPLTKEDIVKIVGIQMR 784
Query: 508 FWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIG 566
A++ L IN+ WD V L++ GYD +GAR +K ++++VV L+ A K I
Sbjct: 785 RIAQR-LKARRINLSWDDSVILFLSEQGYDSAFGARPLKRLIQQKVVILLSKALLKGDIK 843
Query: 567 KGSFVRLYVQWSKEV 581
+ + L + +KEV
Sbjct: 844 PDTSIELTM--AKEV 856
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 226 bits (576), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 187/298 (62%), Gaps = 24/298 (8%)
Query: 262 LEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFY 320
LE L R++GQ+ AI ++ A++R G D P+ F+FLG++G+GKTELAK LA +
Sbjct: 560 LEDELHQRVIGQDEAIEAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELAKALAEF 619
Query: 321 IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVD 380
+ D + R+DMSEYQEKH V++L+GAPPGY+G+D+GGQLT+ +++ P +VVLFDE++
Sbjct: 620 LF-DDESMMTRIDMSEYQEKHSVSRLVGAPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIE 678
Query: 381 KAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFS 440
KAHPDV +LLQ+ D+GRLTD KG+ + K+ I +MTSN+ S+ I
Sbjct: 679 KAHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNMGSSYIQSQ------------ 726
Query: 441 KRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHT 500
+ K GSN + I K+ V +LK++ R EFL RI+E + FLP +++E+
Sbjct: 727 -----MEKLSGSNKEEVIEETKKE--VMNMLKKNI-RPEFLNRIDETIMFLPLTETEIRQ 778
Query: 501 LVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIKHEVERQVVSQLA 557
+V ++ +K L ++ + + + D + + GYD +GAR +K ++R +++ L+
Sbjct: 779 IVLLQIK-GVQKMLAENGVELEMTDAALNFLSQVGYDPEFGARPVKRAIQRYLLNDLS 835
>sp|Q73BY1|CLPB_BACC1 Chaperone protein ClpB OS=Bacillus cereus (strain ATCC 10987)
GN=clpB PE=3 SV=1
Length = 866
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 196/325 (60%), Gaps = 27/325 (8%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E E + LEQ L +R++GQE A++++S A+ R G D + P+ F+FLG +G+GKT
Sbjct: 559 EGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKT 618
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
ELAK LA + D +E IR+DMSEY EKH V++LIGAPPGY+G+++GGQLT+ +++ P
Sbjct: 619 ELAKTLAQSLF-DSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPY 677
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+V+L DE++KAHP+V +LLQ+ D+GR+TD +G+T++ K+ + +MTSN+ S H L
Sbjct: 678 SVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGS----AHLL- 732
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
G D +I ++ +V L+ HF R EFL R++EI+ F
Sbjct: 733 ------------------DGLEDDGSIKEESRE-LVMGQLRGHF-RPEFLNRVDEIILFK 772
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551
P + +E+ +V + + + D+H + D E ++ G+D YGAR +K V+RQ
Sbjct: 773 PLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQ 832
Query: 552 VVSQLAAAHEKSVIGKGSFVRLYVQ 576
V ++LA S I S V + V+
Sbjct: 833 VETKLARELIASTITDNSHVVVDVE 857
>sp|Q9PKS5|CLPB_CHLMU Chaperone protein ClpB OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=clpB PE=3 SV=1
Length = 867
Score = 225 bits (573), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 193/307 (62%), Gaps = 27/307 (8%)
Query: 269 RIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
R+VGQ AI +S +I+ G +D PL VFLFLG +G+GKTELAK LA + +K+E
Sbjct: 569 RVVGQPFAITAVSDSIRSARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLF-NKEE 627
Query: 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVL 387
A IR DM+EY EKH V+KLIG+PPGY+G+++GG L++ L++ P +VVLFDE++KA +V
Sbjct: 628 AMIRFDMTEYMEKHSVSKLIGSPPGYVGYEEGGSLSEALRRRPYSVVLFDEIEKADKEVF 687
Query: 388 TVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSIS 447
+LLQ+FD+G LTD K + + CK+A+F+MTSN+ S E+A + +
Sbjct: 688 NILLQIFDDGILTDSKKRKVNCKNALFIMTSNIGSQELADYCAK---------------- 731
Query: 448 KSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507
+G+ +D + VV P LK +F EF+ RI+EI+ F+P + ++ +V ++N
Sbjct: 732 --KGTIVD----KEAVLSVVAPALKNYF-SPEFINRIDEILPFVPLTTEDIVKIVGIQMN 784
Query: 508 FWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIG 566
A + L++ I++ WD V L++ GYD +GAR +K ++++VV+ L+ A K I
Sbjct: 785 RVALRLLERR-ISLTWDDSVVLFLSEQGYDGAFGARPLKRLIQQKVVTMLSKALLKGDIK 843
Query: 567 KGSFVRL 573
G V L
Sbjct: 844 SGMSVEL 850
>sp|Q822Q4|CLPB_CHLCV Chaperone protein ClpB OS=Chlamydophila caviae (strain GPIC)
GN=clpB PE=3 SV=1
Length = 864
Score = 225 bits (573), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 200/315 (63%), Gaps = 29/315 (9%)
Query: 269 RIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
R+VGQ AI+ +S +I+ G +D PL VFLFLG +G+GKTELAK LA + +K+E
Sbjct: 569 RVVGQPFAISAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALADLLF-NKEE 627
Query: 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVL 387
A +R DM+EY EKH V+KLIG+PPGY+G+++GG L++ L++ P +VVLFDE++KA +V
Sbjct: 628 AMVRFDMTEYMEKHSVSKLIGSPPGYVGYEEGGSLSEALRRRPYSVVLFDEIEKADKEVF 687
Query: 388 TVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSIS 447
+LLQ+FDEG LTD K + + CK+A+F+MTSN+ S E+A + K+G SK T
Sbjct: 688 NILLQIFDEGILTDSKKRKVNCKNALFIMTSNIGSQELADYC---AKKGSRVSKET---- 740
Query: 448 KSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507
+S VV P LK++F EF+ RI++I+ F+P + ++ +V ++
Sbjct: 741 ---------VLS------VVAPTLKKYF-SPEFINRIDDILPFVPLNTEDIVKIVGIQMR 784
Query: 508 FWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIG 566
A++ L++ + + WD V L++ GYD +GAR +K ++++VV+ L+ A K I
Sbjct: 785 RVAQRLLERR-VTLTWDDSVILYLSEQGYDSSFGARPLKRLIQQKVVTLLSKALLKGDIK 843
Query: 567 KGSFVRLYVQWSKEV 581
+ + L + SK+V
Sbjct: 844 SDTSIELTM--SKDV 856
>sp|Q87S63|CLPB_VIBPA Chaperone protein ClpB OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=clpB PE=3 SV=1
Length = 857
Score = 225 bits (573), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 190/306 (62%), Gaps = 29/306 (9%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
EAE+ + +E L +R+VGQ A+ ++S AI+R G +D + P+ FLFLG +G+GKT
Sbjct: 553 EAEKEKLLRMEDVLHNRVVGQSEAVAVVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKT 612
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
EL K LA ++ D ++A +R+DMSE+ EKH VA+L+GAPPGY+G+++GG LT+ +++ P
Sbjct: 613 ELCKTLASFMF-DSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPY 671
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++ ++ + +MTSNL S+ I ++
Sbjct: 672 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFAT 731
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
L +G + +DV +S+HF R EFL R++EIV F
Sbjct: 732 LDYQG------------IKSEVMDV-VSKHF--------------RPEFLNRVDEIVVFH 764
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551
P + + ++ +L AK+ +K V D ++ I G+D YGAR +K +++
Sbjct: 765 PLGQEHIKSIASIQLERLAKRLEEKGYQLEVSDKALDLIAQVGFDPVYGARPLKRAIQQN 824
Query: 552 VVSQLA 557
V + LA
Sbjct: 825 VENPLA 830
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|Q8DEV2|CLPB_VIBVU Chaperone protein ClpB OS=Vibrio vulnificus (strain CMCP6) GN=clpB
PE=3 SV=1
Length = 857
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 194/307 (63%), Gaps = 31/307 (10%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
EAE+ + +E+ L R++GQ+ A+ +++ AI+R G +D + P+ FLFLG +G+GKT
Sbjct: 553 EAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKT 612
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
EL K LA ++ D ++A +R+DMSE+ EKH VA+L+GAPPGY+G+++GG LT+ +++ P
Sbjct: 613 ELCKTLANFMF-DSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPY 671
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++ ++ + +MTSNL S+ I ++
Sbjct: 672 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFAM 731
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
L +G K+ V++ ++ +HF R EFL R++E V F
Sbjct: 732 LDYQG-------------------------IKEQVME-VVTKHF-RPEFLNRVDETVVFH 764
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIKHEVER 550
P + + ++ +LN A + +++H + V D +E I G+D YGAR +K +++
Sbjct: 765 PLGQDHIKSIAAIQLNRLANR-MEEHGYPLEVSDKALELIAQVGFDPVYGARPLKRAIQQ 823
Query: 551 QVVSQLA 557
+ + LA
Sbjct: 824 SIENPLA 830
>sp|Q74FF1|CLPB_GEOSL Chaperone protein ClpB OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=clpB PE=3 SV=1
Length = 865
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 201/334 (60%), Gaps = 30/334 (8%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
+ R E E + +E RL R+VGQ+ A+ +++ AI+R +G +D + P+ FLFLG +
Sbjct: 554 VSRMMEGEADKLVHMEDRLITRVVGQDEALVLVANAIRRARSGLSDPNRPIGSFLFLGPT 613
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTE AK LA ++ D +A +R+DMSEYQEKH VA+LIGAPPGY+G+++GGQLT+ +
Sbjct: 614 GVGKTETAKALAEFLFNDD-QAIVRIDMSEYQEKHTVARLIGAPPGYVGYEEGGQLTEAV 672
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P ++VLFDE++KAHP+V VLLQ+ D+GRLTDG+G+T++ ++ + +MTSNL S I
Sbjct: 673 RRRPYSIVLFDEIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQWIQ 732
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
Q+ ++++ ++++ LK F + EFL RI+E
Sbjct: 733 QYG------SSDYARMKAMVTET---------------------LKEGF-KPEFLNRIDE 764
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKH 546
IV + ++ +V ++ ++ D+ + + D E + +GYD YGAR +K
Sbjct: 765 IVIYHALPLEQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKR 824
Query: 547 EVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKE 580
++R++ LA A + +G VR+ + S E
Sbjct: 825 TIQRKIQDPLALALLEGKFQEGDTVRVDLSVSGE 858
>sp|Q7NFE9|CLPB_GLOVI Chaperone protein ClpB OS=Gloeobacter violaceus (strain PCC 7421)
GN=clpB PE=3 SV=1
Length = 872
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 189/306 (61%), Gaps = 29/306 (9%)
Query: 254 AEERRKY-PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLV-FLFLGSSGIGKT 311
A ER K LE L R+VGQE A+ I+S AI+R G D + P+ F+FLG +G+GKT
Sbjct: 560 ASEREKLLHLEDELHKRVVGQEEAVRIVSEAIQRSRAGLADPNRPIASFIFLGPTGVGKT 619
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
ELAK LA ++ D + A +R+DMSEY EKH V++LIGAPPGY+G+D+GGQLT+ +++ P
Sbjct: 620 ELAKALASFLF-DDENAMVRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGQLTEAVRRRPY 678
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
AVVLFDE++KAH DV VLLQ+ D+GR+TD +G+TI+ K+A+ +MTSN+ S+ I
Sbjct: 679 AVVLFDEIEKAHNDVFNVLLQVLDDGRITDSQGRTIDFKNAVIIMTSNIGSDAI------ 732
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
LR G + ++ V++ ++ HF R EFL R+++I+ F
Sbjct: 733 LRLGGND------------------AYYEQMREEVMRA-MQVHF-RPEFLNRVDDIIIFR 772
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551
+ +L +V ++ K+ D+ + + ++ I+ GYD YGAR +K ++ +
Sbjct: 773 NLRRDQLAAIVKLQIARLEKRLADRKITLKLSEAAIDYIVEAGYDPVYGARPLKRAIQNE 832
Query: 552 VVSQLA 557
+V+ LA
Sbjct: 833 LVNPLA 838
>sp|Q6N1H2|CLPB_RHOPA Chaperone protein ClpB OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=clpB PE=3 SV=1
Length = 879
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 217/393 (55%), Gaps = 48/393 (12%)
Query: 208 LLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLK 267
L K A+ +NSG + + +I Q++ ++ D E E E+ + +E++L
Sbjct: 511 LEKKIAEIEANENSGAMVEEAVTANHIAQVVSRWTGVPVDKMLEGEKEKLLR--MEEQLG 568
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKK 326
R+VGQ A++ +S A++R G D + P+ F+FLG +G+GKTEL K LA Y+ D +
Sbjct: 569 QRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLF-DDE 627
Query: 327 EAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDV 386
A +R+DMSE+ EKH VA+LIGAPPGY+G+D+GG LT+ +++ P V+LFDE++KAHPDV
Sbjct: 628 TAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVILFDEIEKAHPDV 687
Query: 387 LTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSI 446
VLLQ+ D+GRLTDG+G+T++ ++ + VMTSNL S + EGE+ T ++
Sbjct: 688 FNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSNLGSEYLVNQ-----PEGED----TGAV 738
Query: 447 SKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCREL 506
+ V +++ HF R EFL R++EI+ F KSE+ +V +
Sbjct: 739 REQ-----------------VMGMVRAHF-RPEFLNRVDEIILFHRLQKSEMGRIVDIQF 780
Query: 507 NFWAKKALDKHNINIVWDIDVET---ILADGYDVHYGARSIKHEVERQVVSQLAAAHEKS 563
K D+ IV D+D + G+D YGAR +K ++R V LA +
Sbjct: 781 ARLTKLLEDR---KIVLDLDAAARDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEG 837
Query: 564 VIGKGSFVRLYVQWSKEVSEDSAKGGIIKLKVK 596
+ G V + SA+GG++ K
Sbjct: 838 SVKDGDHVAI-----------SAEGGVLTFNGK 859
>sp|Q89UL2|CLPB_BRAJA Chaperone protein ClpB OS=Bradyrhizobium japonicum (strain USDA
110) GN=clpB PE=3 SV=1
Length = 879
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 202/348 (58%), Gaps = 35/348 (10%)
Query: 213 ADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVG 272
AD K+NSG + + +I Q++ ++ D + E E+ + +E L R+VG
Sbjct: 516 ADIEAKENSGEMMEEAVTANHIAQVVSRWTGVPVD--KMLEGEKDKLLKMEDSLGKRVVG 573
Query: 273 QESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR 331
Q A++ ++ A++R G D + P+ F+FLG +G+GKTEL K LA Y+ D+ A +R
Sbjct: 574 QAEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFNDET-AMVR 632
Query: 332 LDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLL 391
LDMSEY EKH V++LIGAPPGY+G+D+GG LT+ +++ P VVLFDE++KAHPDV VLL
Sbjct: 633 LDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLL 692
Query: 392 QLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQG 451
Q+ D+GRLTDG+G+T++ ++ + +MTSNL S + EGE+ S
Sbjct: 693 QVLDDGRLTDGQGRTVDFRNTLIIMTSNLGSEFLVNQP-----EGEDTSA---------- 737
Query: 452 SNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWA- 510
++ V+ +++ HF R EFL R++EI+ F +SE+ +V E+ F
Sbjct: 738 ----------VREQVMG-MVRGHF-RPEFLNRVDEIILFHRLQRSEMGRIV--EIQFARL 783
Query: 511 KKALDKHNINIVWDIDVETIL-ADGYDVHYGARSIKHEVERQVVSQLA 557
+K L I + D L A G+D YGAR +K ++R + LA
Sbjct: 784 QKLLTDRKIVLTLDGAARDWLAAKGWDPAYGARPLKRVIQRYLQDPLA 831
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E R LE L R++GQ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + + +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMF-GEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ + +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ + S+GS+ + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGA---SEGSDYETVRKTMMKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NINI V D E I +GYD YGAR +
Sbjct: 708 IIVFHKLTKDELKEIVTMMVNKLTHR-LSEQNINIVVTDKAKEKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ V L+
Sbjct: 767 RAIQKTVEDNLS 778
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E R LE L R++GQ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + + +A IR+DMSE+ EKH V++L+GAPPGY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMF-GEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ + +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ + S+GS+ + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGA---SEGSDYETVRKTMMKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NINI V D E I +GYD YGAR +
Sbjct: 708 IIVFHKLTKDELKEIVTMMVNKLTHR-LSEQNINIVVTDKAKEKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ V L+
Sbjct: 767 RAIQKTVEDNLS 778
>sp|Q81TT4|CLPB_BACAN Chaperone protein ClpB OS=Bacillus anthracis GN=clpB PE=3 SV=1
Length = 866
Score = 223 bits (569), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 189/306 (61%), Gaps = 27/306 (8%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E E + LEQ L +R++GQE A++++S A+ R G D + P+ F+FLG +G+GKT
Sbjct: 559 EGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKT 618
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
ELAK LA + D +E IR+DMSEY EKH V++LIGAPPGY+G+++GGQLT+ +++ P
Sbjct: 619 ELAKTLAQSLF-DSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPY 677
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+V+L DE++KAHP+V +LLQ+ D+GR+TD +G+T++ K+ + +MTSN+ S H L
Sbjct: 678 SVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGS----AHLL- 732
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
G D +I ++ +V L+ HF R EFL R++EI+ F
Sbjct: 733 ------------------DGLEEDGSIKEESRE-LVMGQLRGHF-RPEFLNRVDEIILFK 772
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551
P + +E+ +V + + + D+H + + E ++ G+D YGAR +K V+RQ
Sbjct: 773 PLTTNEIKGIVDKIVKELQGRLADRHITVKLTEAAKEFVVEAGFDPMYGARPLKRYVQRQ 832
Query: 552 VVSQLA 557
V ++LA
Sbjct: 833 VETKLA 838
>sp|Q7WSY8|CLPB_PROFC Chaperone protein ClpB OS=Propionibacterium freudenreichii subsp.
shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1)
GN=clpB PE=2 SV=2
Length = 866
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 187/309 (60%), Gaps = 33/309 (10%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E E + +E R+ R+VGQ++A+ +S A++R G +D + P F+FLG +G+GKT
Sbjct: 556 EGESEKLLDMENRIGKRLVGQQAAVKAVSDAVRRSRAGISDPNRPTGSFMFLGPTGVGKT 615
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
ELAK LA ++ D + A +R+DMSEY EKH V++L+GAPPGY+G+++GGQLT+ +++ P
Sbjct: 616 ELAKALADFLF-DDETAMVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRRPY 674
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+VVL DE++KAHPDV +LLQ+ D+GRLTDG+G+T++ ++ I +MTSNL S +A
Sbjct: 675 SVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNVILIMTSNLGSQFMAD---- 730
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
PS+S + N V ++K HF R EFL R++EIV F
Sbjct: 731 ------------PSMSPEERRNQ------------VMAVVKDHF-RPEFLNRLDEIVLFD 765
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA-DGYDVHYGARSIKHEVER 550
S+ +L +V L+ ++ L + I+I LA GYD YGAR ++ ++
Sbjct: 766 ELSREDLDKIVDISLDKLNRR-LAERRISIDVSAAAREWLARTGYDPVYGARPLRRLIQT 824
Query: 551 QVVSQLAAA 559
V QLA A
Sbjct: 825 TVEDQLARA 833
>sp|P74459|CLPB1_SYNY3 Chaperone protein ClpB 1 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=clpB1 PE=3 SV=1
Length = 898
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 193/313 (61%), Gaps = 30/313 (9%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
+ R E E ++ LE L R++GQ+ A+ +SAAI+R G D P+ FLF+G +
Sbjct: 563 MNRLMETERQKLLQLEGHLHQRVIGQKEAVAAVSAAIRRARAGMKDPSRPIGSFLFMGPT 622
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA ++ D +EA +R+DMSEY EKH V++LIGAPPGY+G+++GGQL++ +
Sbjct: 623 GVGKTELARALAGFLF-DSEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLSEAV 681
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +VVL DEV+KAH DV +LLQ+ D+GR+TD +G+ ++ ++ I VMTSN+ S+
Sbjct: 682 RRRPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDSQGRVVDFRNTIIVMTSNIGSD--- 738
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
H L L + ++ K + +S L++HF R EFL RI++
Sbjct: 739 -HILSLSADDADYDKMQKQVLQS---------------------LRKHF-RPEFLNRIDD 775
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIK 545
++ F + EL +V ++ +K LD+ I + + D ++ I++ GYD YGAR +K
Sbjct: 776 LIIFHTLKRDELRRIVVLQIK-RIEKLLDEQKITLSLSDAALDHIVSAGYDPTYGARPLK 834
Query: 546 HEVERQVVSQLAA 558
++RQ+ + +A
Sbjct: 835 RAIQRQLENPIAT 847
>sp|O84115|CLPB_CHLTR Chaperone protein ClpB OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=clpB PE=3 SV=1
Length = 867
Score = 222 bits (566), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/418 (34%), Positives = 238/418 (56%), Gaps = 38/418 (9%)
Query: 158 TAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTV 217
T ++K N E L E+E + N + L Y ++ E + L A+ +
Sbjct: 469 TGLKEKKNALENLKFAEEEAERTADYNRV----AELRYSLIPSLEEEIHL-----AEEAL 519
Query: 218 KDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAI 277
G + + ++ I Q++ + +Q+ E E + LE+ L++R+VGQ AI
Sbjct: 520 NQRDGRLLQEEVDERLIAQVVANWT--GIPVQKMLEGESEKLLVLEESLEERVVGQPFAI 577
Query: 278 NIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSE 336
+S +I+ G +D PL VFLFLG +G+GKTELAK LA + +K+EA IR DM+E
Sbjct: 578 AAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLF-NKEEAMIRFDMTE 636
Query: 337 YQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDE 396
Y EKH V+KLIG+PPGY+G+++GG L++ L++ P +VVLFDE++KA +V +LLQ+FD+
Sbjct: 637 YMEKHSVSKLIGSPPGYVGYEEGGSLSEALRRRPYSVVLFDEIEKADKEVFNILLQIFDD 696
Query: 397 GRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDV 456
G LTD K + + CK+A+F+MTSN+ S E+A + + +G+ +D
Sbjct: 697 GILTDSKKRKVNCKNALFIMTSNIGSQELADYCTK------------------KGTIVD- 737
Query: 457 TISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDK 516
+ VV P LK +F EF+ RI++I+ F+P + ++ +V ++N A + L++
Sbjct: 738 ---KEAVLSVVAPALKNYF-SPEFINRIDDILPFVPLTTEDIVKIVGIQMNRVALRLLER 793
Query: 517 HNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRL 573
I++ WD + L++ GYD +GAR +K ++++VV+ L+ A K I G V L
Sbjct: 794 -KISLTWDDSLVLFLSEQGYDSAFGARPLKRLIQQKVVTMLSKALLKGDIKPGMAVEL 850
>sp|Q8VYJ7|CLPB4_ARATH Chaperone protein ClpB4, mitochondrial OS=Arabidopsis thaliana
GN=CLPB4 PE=1 SV=1
Length = 964
Score = 222 bits (566), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 207/342 (60%), Gaps = 32/342 (9%)
Query: 231 DANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG 290
D +I +I+ K+ L +++E + LE+ L R++GQ+ A+ ++ AI+R G
Sbjct: 618 DLDIAEIVSKWT--GIPLSNLQQSEREKLVMLEEVLHHRVIGQDMAVKSVADAIRRSRAG 675
Query: 291 WTDDDHPLV-FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
+D + P+ F+F+G +G+GKTELAK LA Y+ + + A +R+DMSEY EKH V++L+GA
Sbjct: 676 LSDPNRPIASFMFMGPTGVGKTELAKALAGYLF-NTENAIVRVDMSEYMEKHSVSRLVGA 734
Query: 350 PPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC 409
PPGY+G+++GGQLT+ +++ P +VVLFDE++KAHPDV +LLQL D+GR+TD +G+T+
Sbjct: 735 PPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHPDVFNILLQLLDDGRITDSQGRTVSF 794
Query: 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQP 469
K+ + +MTSN+ S+ H L+ + E+ + I K Q VV+
Sbjct: 795 KNCVVIMTSNIGSH----HILETLRNNEDSKEAVYEIMKRQ---------------VVE- 834
Query: 470 ILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVET 529
L R R EF+ RI+E + F P +E+ +V ++ K +L++ I + + +
Sbjct: 835 -LARQNFRPEFMNRIDEYIVFQPLDSNEISKIVELQMR-RVKNSLEQKKIKLQYTKEAVD 892
Query: 530 ILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSF 570
+LA G+D +YGAR +K +++ V +++A I KG F
Sbjct: 893 LLAQLGFDPNYGARPVKRVIQQMVENEIAVG-----ILKGDF 929
>sp|Q7UBW5|CLPB_SHIFL Chaperone protein ClpB OS=Shigella flexneri GN=clpB PE=3 SV=2
Length = 857
Score = 222 bits (565), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 207/354 (58%), Gaps = 33/354 (9%)
Query: 231 DANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG 290
DA I ++L ++ + R E+E + +EQ L R++GQ A++ +S AI+R G
Sbjct: 533 DAEIAEVLARWT--GIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAG 590
Query: 291 WTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
D + P+ FLFLG +G+GKTEL K LA ++ D EA +R+DMSE+ EKH V++L+GA
Sbjct: 591 LADPNRPIGSFLFLGPTGVGKTELCKALANFMF-DSDEAMVRIDMSEFMEKHSVSRLVGA 649
Query: 350 PPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC 409
PPGY+G+++GG LT+ +++ P +V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++
Sbjct: 650 PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF 709
Query: 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQP 469
++ + +MTSNL S+ I E F + LD H K+ V+
Sbjct: 710 RNTVVIMTSNLGSDLIQ----------ERFGE------------LDYA---HMKELVLGV 744
Query: 470 ILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVE 528
+ H R EF+ RI+E+V F P + + ++ +L K+ L++ I + D ++
Sbjct: 745 V--SHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKR-LEERGYEIHISDEALK 801
Query: 529 TILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVS 582
+ +GYD YGAR +K +++Q+ + LA + G +RL V + V+
Sbjct: 802 LLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVA 855
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 222 bits (565), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 187/307 (60%), Gaps = 30/307 (9%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E E + LE L R+VGQ+ AI ++ AI+R G D + P+ FLFLG +G+GKT
Sbjct: 543 EGEREKLLRLEDELHKRVVGQDEAIVAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKT 602
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
ELAK LA + D +E +R+DMSEYQEKH VA+LIGAPPGY+G+++GGQLT+ +++ P
Sbjct: 603 ELAKTLAASLF-DTEENMVRIDMSEYQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPY 661
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+V+LFDE++KAHPDV VLLQ+ D+GRLTDG+G+T++ ++ + ++TSN+ S I +
Sbjct: 662 SVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIILTSNIGSPLIFE---- 717
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
G + + R F +L++HF R EFL R++EIV F
Sbjct: 718 ---------------GIQSGQSYETIRERVFG------VLQQHF-RPEFLNRLDEIVVFR 755
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVER 550
P ++ ++ +V +L +K L + I + + LA GYD +GAR +K ++R
Sbjct: 756 PLAREQIAAIVQIQLE-AVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQR 814
Query: 551 QVVSQLA 557
++ + L+
Sbjct: 815 ELETPLS 821
>sp|Q8DJ40|CLPB1_THEEB Chaperone protein ClpB 1 OS=Thermosynechococcus elongatus (strain
BP-1) GN=clpB1 PE=3 SV=1
Length = 871
Score = 222 bits (565), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 203/334 (60%), Gaps = 30/334 (8%)
Query: 227 DYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKR 286
D +A+I +I+ K+ + + E+E ++ LE+ L R+VGQ+ A++ ++ AI+R
Sbjct: 534 DEVTEADIAEIISKWT--GIPVSKLVESEAQKLLHLEEELHKRVVGQDEAVSAVAEAIQR 591
Query: 287 KENGWTDDDHPLV-FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345
G D + P+ F+FLG +G+GKTELAK LA ++ D +EA +R+DMSEY EKH V++
Sbjct: 592 SRAGLADPNRPIASFIFLGPTGVGKTELAKALAAFMF-DTEEALVRIDMSEYMEKHAVSR 650
Query: 346 LIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGK 405
LIGAPPGY+G+D+GGQLT+ +++ P AVVLFDE++KAHPDV V LQ+ D+GR+TD +G+
Sbjct: 651 LIGAPPGYVGYDEGGQLTEAIRRRPYAVVLFDEIEKAHPDVFNVFLQILDDGRVTDSQGR 710
Query: 406 TIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDH 465
T++ K+ I +MTSN+ S Q+ L + + +S+ + ++
Sbjct: 711 TVDFKNTIIIMTSNIGS----QYILDVAGDDSRYSEMYNRVMEA---------------- 750
Query: 466 VVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDI 525
++ HF R EFL R++E + F K +L +V ++ ++ D+H + +
Sbjct: 751 -----MRAHF-RPEFLNRVDEFIIFHSLRKDQLRQIVQLQVQRLQQRLSDRHITLSLTEK 804
Query: 526 DVETILADGYDVHYGARSIKHEVERQVVSQLAAA 559
++ + GYD YGAR +K +++Q+ + +A A
Sbjct: 805 AIDFLAEVGYDPVYGARPLKRAIQKQLETPIAKA 838
>sp|Q1RGR1|CLPB_RICBR Chaperone protein ClpB OS=Rickettsia bellii (strain RML369-C)
GN=clpB PE=3 SV=1
Length = 858
Score = 222 bits (565), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 192/322 (59%), Gaps = 31/322 (9%)
Query: 254 AEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTE 312
+E R +EQ+L++ ++GQ+ AI +S A++R G D + PL FLFLG +G+GKTE
Sbjct: 553 SERERLLVMEQKLRESVIGQDEAIKSVSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTE 612
Query: 313 LAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNA 372
L K LA ++ D + A +R+DMSEY EKH +++LIGAPPGY+G+D GG LT+ +++ P
Sbjct: 613 LTKALAGFLF-DDRNAILRIDMSEYMEKHAISRLIGAPPGYVGYDQGGVLTEAVRRRPYQ 671
Query: 373 VVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQL 432
V+LFDEV+KAHPD+ ++LQ+ DEGRLTD +G T++ K+ I V+TSNL + +
Sbjct: 672 VILFDEVEKAHPDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVNQ---- 727
Query: 433 RKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP 492
KEGE+ K KD V++ + + + EFL R++EI+ F
Sbjct: 728 -KEGEDTYK--------------------VKDQVMEYV--KMVFKPEFLNRLDEIILFHR 764
Query: 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQ 551
++S +H +V +L KK L NI + +D LA+ GYD +GAR +K ++R+
Sbjct: 765 LNQSNIHDIVKIQLE-GLKKILSAQNIILEFDEPALNYLAEKGYDPSFGARPLKRLIQRE 823
Query: 552 VVSQLAAAHEKSVIGKGSFVRL 573
+ + LA + G V++
Sbjct: 824 IQNNLAKMILAGEVSSGKIVKI 845
>sp|P63284|CLPB_ECOLI Chaperone protein ClpB OS=Escherichia coli (strain K12) GN=clpB
PE=1 SV=1
Length = 857
Score = 221 bits (564), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 207/354 (58%), Gaps = 33/354 (9%)
Query: 231 DANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG 290
DA I ++L ++ + R E+E + +EQ L R++GQ A++ +S AI+R G
Sbjct: 533 DAEIAEVLARWT--GIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAG 590
Query: 291 WTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
D + P+ FLFLG +G+GKTEL K LA ++ D EA +R+DMSE+ EKH V++L+GA
Sbjct: 591 LADPNRPIGSFLFLGPTGVGKTELCKALANFMF-DSDEAMVRIDMSEFMEKHSVSRLVGA 649
Query: 350 PPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC 409
PPGY+G+++GG LT+ +++ P +V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++
Sbjct: 650 PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF 709
Query: 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQP 469
++ + +MTSNL S+ I E F + LD H K+ V+
Sbjct: 710 RNTVVIMTSNLGSDLIQ----------ERFGE------------LDYA---HMKELVLGV 744
Query: 470 ILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVE 528
+ H R EF+ RI+E+V F P + + ++ +L K+ L++ I + D ++
Sbjct: 745 V--SHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKR-LEERGYEIHISDEALK 801
Query: 529 TILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVS 582
+ +GYD YGAR +K +++Q+ + LA + G +RL V + V+
Sbjct: 802 LLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVA 855
>sp|P63286|CLPB_ECOL6 Chaperone protein ClpB OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=clpB PE=3 SV=1
Length = 857
Score = 221 bits (564), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 207/354 (58%), Gaps = 33/354 (9%)
Query: 231 DANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG 290
DA I ++L ++ + R E+E + +EQ L R++GQ A++ +S AI+R G
Sbjct: 533 DAEIAEVLARWT--GIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAG 590
Query: 291 WTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
D + P+ FLFLG +G+GKTEL K LA ++ D EA +R+DMSE+ EKH V++L+GA
Sbjct: 591 LADPNRPIGSFLFLGPTGVGKTELCKALANFMF-DSDEAMVRIDMSEFMEKHSVSRLVGA 649
Query: 350 PPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC 409
PPGY+G+++GG LT+ +++ P +V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++
Sbjct: 650 PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF 709
Query: 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQP 469
++ + +MTSNL S+ I E F + LD H K+ V+
Sbjct: 710 RNTVVIMTSNLGSDLIQ----------ERFGE------------LDYA---HMKELVLGV 744
Query: 470 ILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVE 528
+ H R EF+ RI+E+V F P + + ++ +L K+ L++ I + D ++
Sbjct: 745 V--SHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKR-LEERGYEIHISDEALK 801
Query: 529 TILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVS 582
+ +GYD YGAR +K +++Q+ + LA + G +RL V + V+
Sbjct: 802 LLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVA 855
>sp|P63285|CLPB_ECO57 Chaperone protein ClpB OS=Escherichia coli O157:H7 GN=clpB PE=3
SV=1
Length = 857
Score = 221 bits (564), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 207/354 (58%), Gaps = 33/354 (9%)
Query: 231 DANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG 290
DA I ++L ++ + R E+E + +EQ L R++GQ A++ +S AI+R G
Sbjct: 533 DAEIAEVLARWT--GIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAG 590
Query: 291 WTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
D + P+ FLFLG +G+GKTEL K LA ++ D EA +R+DMSE+ EKH V++L+GA
Sbjct: 591 LADPNRPIGSFLFLGPTGVGKTELCKALANFMF-DSDEAMVRIDMSEFMEKHSVSRLVGA 649
Query: 350 PPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC 409
PPGY+G+++GG LT+ +++ P +V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++
Sbjct: 650 PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF 709
Query: 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQP 469
++ + +MTSNL S+ I E F + LD H K+ V+
Sbjct: 710 RNTVVIMTSNLGSDLIQ----------ERFGE------------LDYA---HMKELVLGV 744
Query: 470 ILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVE 528
+ H R EF+ RI+E+V F P + + ++ +L K+ L++ I + D ++
Sbjct: 745 V--SHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKR-LEERGYEIHISDEALK 801
Query: 529 TILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVS 582
+ +GYD YGAR +K +++Q+ + LA + G +RL V + V+
Sbjct: 802 LLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVA 855
>sp|Q8YM56|CLPB2_NOSS1 Chaperone protein ClpB 2 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=clpB2 PE=3 SV=2
Length = 872
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 205/348 (58%), Gaps = 32/348 (9%)
Query: 231 DANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG 290
+A+I +I+ K+ + + E+E+ + LE L R++GQ+ A+ ++ AI+R G
Sbjct: 539 EADIAEIISKWT--GIPISKLVESEKEKLLHLEDELHHRVIGQDEAVTAVADAIQRSRAG 596
Query: 291 WTDDDHPLV-FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
D + P F+FLG +G+GKTELAK LA Y+ D ++A +R+DMSEY EKH V++LIGA
Sbjct: 597 LADPNRPTASFVFLGPTGVGKTELAKALASYMF-DTEDALVRIDMSEYMEKHAVSRLIGA 655
Query: 350 PPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC 409
PPGY+G+++GGQLT+ +++ P AV+LFDE++KAHPDV + LQ+ D+GR+TD +G T++
Sbjct: 656 PPGYVGYEEGGQLTETIRRRPYAVILFDEIEKAHPDVFNIFLQILDDGRVTDAQGHTVDF 715
Query: 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQP 469
K+ I +MTSN+ S Q+ L + + + + H V
Sbjct: 716 KNTIIIMTSNIGS----QYILDIAGDNSRYDEMR---------------------HRVME 750
Query: 470 ILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVE 528
++ F R EFL RI+E++ F K EL +V ++ K LD I++ + D+ ++
Sbjct: 751 AMRNSF-RPEFLNRIDEVIIFHSLDKKELRQIVQLQVERL-KARLDDRKISLRLSDVALD 808
Query: 529 TILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQ 576
+ GYD +GAR +K ++R++ +Q+A A + G + + VQ
Sbjct: 809 FLAEVGYDPVFGARPLKRAIQRELETQIAKAILRGEFNDGDTIFVDVQ 856
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 187/312 (59%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E R LEQ L DR++GQ A+ IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + +++A IR+DMSE+ EKH V++L+GAPPGY+GHD+GGQLT+++
Sbjct: 548 GVGKTELARALAESMF-GEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDEGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+ ++ ++ + +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQVDFRNTVIIMTSNVGAQELQ 666
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
G S+G + + K+ LK F R EFL R+++
Sbjct: 667 DQRFAGFGGG------------SEGHDYETIRKTMMKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIK 545
I+ F SK EL +V +N ++ L + +INI V D E I +GYD YGAR +
Sbjct: 708 IIVFHKLSKDELKEIVTMMVNKLTQR-LSEQDINIVVTDKAKEKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ V L+
Sbjct: 767 RAIQKTVEDNLS 778
>sp|Q9A9T4|CLPB_CAUCR Chaperone protein ClpB OS=Caulobacter crescentus (strain ATCC 19089
/ CB15) GN=clpB PE=3 SV=1
Length = 859
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 182/307 (59%), Gaps = 31/307 (10%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E E + +E L+ R+VGQ+ A+ +S A++R G D P+ FLFLG +G+GKT
Sbjct: 551 EGEREKLLKMEDELRGRVVGQDEALEAVSDAVRRARAGLQDPSKPIGSFLFLGPTGVGKT 610
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
EL K LA ++ D+ A R+DMSEY EKH V++LIGAPPGY+G+D+GG LT+ +++ P
Sbjct: 611 ELTKSLAEFLFADEA-AITRMDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAIRRRPY 669
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
VVLFDE++KAHPDV VLLQ+ D+GRLTDG+G+T++ ++ + +MTSNL + +A
Sbjct: 670 QVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLASQ--- 726
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
++GE+ P + T+ HF R EFL RI+EI+ F
Sbjct: 727 --EDGEDVEAVRPMVMN--------TVRGHF--------------RPEFLNRIDEIILFK 762
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVER 550
S+ + +V +L +K L + + D + LAD GYD YGAR +K +++
Sbjct: 763 RLSRHNMGDIVRIQLQ-RVEKLLADRRMALALDAEALNWLADKGYDPVYGARPLKRVIQK 821
Query: 551 QVVSQLA 557
++V +A
Sbjct: 822 ELVDPIA 828
>sp|Q6MIV0|CLPB_BDEBA Chaperone protein ClpB OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=clpB PE=3 SV=1
Length = 855
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 189/307 (61%), Gaps = 33/307 (10%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E+E ++ +E LK R+VGQ+ A+ I++ AI+R +D + P+ F+FLG +G+GKT
Sbjct: 555 ESESQKLLHMEDSLKHRVVGQDHALTIVADAIRRARAEISDPNRPIGTFMFLGPTGVGKT 614
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
E K LA ++ D ++A +R+DMSEY EKH V++LIGAPPGY+G+++GGQLT+ +++ P
Sbjct: 615 ETVKALAEFLF-DDEQAVVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTESVRRRPY 673
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+VVL DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++ K+ + +MTSN+ S I
Sbjct: 674 SVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVLIMTSNVGSQSI------ 727
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
LD +S + K V L+ F R EFL RI+EIV F
Sbjct: 728 ----------------------LDPGMSENQKREAVNEALRERF-RPEFLNRIDEIVMFK 764
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA-DGYDVHYGARSIKHEVER 550
++++ +V +L+ A++ L I I ++ + LA GYD YGAR +K ++
Sbjct: 765 SLGEAQISGIVKVQLDLVAQR-LRAKKIGIDFNQEAIDFLAKKGYDPIYGARPLKRVIQT 823
Query: 551 QVVSQLA 557
++++ L+
Sbjct: 824 ELLNPLS 830
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 189/312 (60%), Gaps = 23/312 (7%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
L + E E + LE L +R++GQ+ A+N IS A++R G D P+ F+FLG +
Sbjct: 488 LTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA + D +A IR+DMSE+ EKH V++L+GAP GY+GHDDGGQLT+++
Sbjct: 548 GVGKTELARALAESMFGDD-DAMIRVDMSEFMEKHAVSRLVGAPLGYVGHDDGGQLTEKV 606
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+G LTD KG+T++ ++ I +MTSN+ + E+
Sbjct: 607 RRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQEL- 665
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + F+ S S G + + K+ LK F R EFL R+++
Sbjct: 666 --------QDQRFAGFGGS---SDGQDYETIRKTMLKE------LKNSF-RPEFLNRVDD 707
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIK 545
I+ F +K EL +V +N + L + NIN IV D + I +GYD YGAR +
Sbjct: 708 IIVFHKLTKEELKEIVTMMVNKLTNR-LSEQNINIIVTDKAKDKIAEEGYDPEYGARPLI 766
Query: 546 HEVERQVVSQLA 557
+++ + L+
Sbjct: 767 RAIQKTIEDNLS 778
>sp|Q9RVI3|CLPB_DEIRA Chaperone protein ClpB OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=clpB PE=3 SV=2
Length = 852
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/307 (40%), Positives = 189/307 (61%), Gaps = 30/307 (9%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E E + LE++L R++GQ+ AI +S AI+R G D + PL F+FLG SG+GKT
Sbjct: 543 EGEREKLLHLEEQLHGRVIGQDRAIVSVSDAIRRARAGLNDPNRPLGSFMFLGPSGVGKT 602
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
ELAK LA ++ D +A +R+DMSEY EKH VA+LIGAPPGY+G ++GGQLT+ +++ P
Sbjct: 603 ELAKALAEFLF-DSSDAMVRIDMSEYMEKHTVARLIGAPPGYVGFEEGGQLTEAVRRRPY 661
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
AV+LFDE++KAHPDV VLLQ+ D+GRLTDG+G+T++ ++ + +MTSN+ S I L+
Sbjct: 662 AVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNIGSPLI----LE 717
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
+++ GE+ TI D L+ F R EFL R+++I+ F
Sbjct: 718 MQQRGEDAE----------------TIKSAVMDE-----LRGEF-RPEFLNRVDDIIVFD 755
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVER 550
+ +L ++V +L ++ L + I + D + LA+ GYD YGAR ++ + +
Sbjct: 756 ALTAKDLQSIVDIQLGGL-RRRLAERRITLHLTEDAKDKLAELGYDPAYGARPLRRTISQ 814
Query: 551 QVVSQLA 557
+ + LA
Sbjct: 815 YIETPLA 821
>sp|Q8KG79|CLPB1_CHLTE Probable chaperone protein ClpB 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=clpB1 PE=3 SV=1
Length = 438
Score = 219 bits (557), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 189/309 (61%), Gaps = 28/309 (9%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
++E ++ +E L R+VGQ+ A+ +S A+KR G D+ P+ F+FLG +G+GKT
Sbjct: 126 QSERQKLLGIESELHRRVVGQDEAVRAVSDAVKRSRAGMGDEKRPIGSFIFLGPTGVGKT 185
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
ELA+ LA Y+ D ++A IR+DMSEY E H V++L+GAPPGY+G+++GGQLT+ +++ P
Sbjct: 186 ELARTLAEYLF-DDEDALIRIDMSEYMEAHTVSRLVGAPPGYVGYEEGGQLTEAVRRKPF 244
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+VVL DE++KAHPDV +LLQ+ D+GRLTD KG+T+ K+ I +MTSN+ + I
Sbjct: 245 SVVLLDEIEKAHPDVFNILLQILDDGRLTDSKGRTVNFKNTIIIMTSNIGAQLIQSEMEH 304
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
L +G + D ++ K+ + Q +LK+ R EFL RI+E++ F
Sbjct: 305 L-----------------EGRDADAALA-GLKEKLFQ-LLKQQV-RPEFLNRIDEVILFT 344
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETIL---ADGYDVHYGARSIKHEV 548
P ++ L +V + N + A + I +I E ++ G+D +GAR +K +
Sbjct: 345 PLTRENLREIVTIQFNRIKETARRQR---ITLEISDEALMWLAKTGFDPAFGARPLKRVM 401
Query: 549 ERQVVSQLA 557
+RQ+ ++L+
Sbjct: 402 QRQITNRLS 410
>sp|Q9JTP9|CLPB_NEIMA Chaperone protein ClpB OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=clpB PE=3 SV=1
Length = 859
Score = 219 bits (557), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 187/309 (60%), Gaps = 32/309 (10%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKT 311
E E + +E+ L R+VGQ+ A+ +S AI+R +G D + P FLFLG +G+GKT
Sbjct: 557 EGERDKLLKMEEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKT 616
Query: 312 ELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371
EL K LA ++ D ++ IR+DMSEY EKH VA+LIGAPPGY+G+++GG LT+++++ P
Sbjct: 617 ELCKALAGFLF-DSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPY 675
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
+V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++ K+ + VMTSN+ S I Q +Q
Sbjct: 676 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQMGIQ 735
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
+ +E VV +K HF R E + RI+E+V F
Sbjct: 736 DYEAVKE---------------------------VVMEDVKEHF-RPEMINRIDEVVVFH 767
Query: 492 PFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIKHEVER 550
++ + ++ +L K+ L+K N+ + V D ++ I G+D YGAR +K ++
Sbjct: 768 GLDQANIRSIAKIQLKGLEKR-LEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQS 826
Query: 551 QVVSQLAAA 559
++ + LA A
Sbjct: 827 EIENPLAKA 835
>sp|Q7CQ01|CLPB_SALTY Chaperone protein ClpB OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=clpB PE=3 SV=1
Length = 857
Score = 218 bits (556), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 205/345 (59%), Gaps = 33/345 (9%)
Query: 231 DANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG 290
DA I ++L ++ + R E E + +EQ L R++GQ A+ +S AI+R G
Sbjct: 533 DAEIAEVLARWT--GIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAG 590
Query: 291 WTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
+D + P+ FLFLG +G+GKTEL K LA ++ D +A +R+DMSE+ EKH V++L+GA
Sbjct: 591 LSDPNRPIGSFLFLGPTGVGKTELCKALANFMF-DSDDAMVRIDMSEFMEKHSVSRLVGA 649
Query: 350 PPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC 409
PPGY+G+++GG LT+ +++ P +V+L DEV+KAHPDV +LLQ+ D+GRLTDG+G+T++
Sbjct: 650 PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF 709
Query: 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQP 469
++ + +MTSNL S+ I E F + LD K+ V+
Sbjct: 710 RNTVVIMTSNLGSDLIQ----------ERFGE------------LDYG---RMKEMVL-G 743
Query: 470 ILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI-VWDIDVE 528
++ ++F R EF+ RI+E+V F P + + ++ +L K+ L++ I + D ++
Sbjct: 744 VVSQNF-RPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKR-LEERGYEIHISDEALK 801
Query: 529 TILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRL 573
+ A+GYD YGAR +K +++Q+ + LA + G +RL
Sbjct: 802 LLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRL 846
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,033,414
Number of Sequences: 539616
Number of extensions: 9657707
Number of successful extensions: 40585
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 1081
Number of HSP's that attempted gapping in prelim test: 34432
Number of HSP's gapped (non-prelim): 4577
length of query: 607
length of database: 191,569,459
effective HSP length: 123
effective length of query: 484
effective length of database: 125,196,691
effective search space: 60595198444
effective search space used: 60595198444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)