Query psy1308
Match_columns 607
No_of_seqs 619 out of 4258
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 18:54:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 2.3E-57 5.1E-62 484.0 31.3 319 234-580 459-779 (786)
2 PRK11034 clpA ATP-dependent Cl 100.0 1.3E-43 2.7E-48 388.9 29.9 295 254-580 444-740 (758)
3 CHL00095 clpC Clp protease ATP 100.0 4.2E-43 9E-48 395.6 33.9 307 255-580 496-806 (821)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 1.1E-42 2.4E-47 389.4 30.4 297 255-576 553-851 (852)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 2.1E-41 4.5E-46 382.7 31.5 295 255-578 552-848 (852)
6 TIGR02639 ClpA ATP-dependent C 100.0 1.5E-41 3.2E-46 379.0 29.9 289 255-575 441-731 (731)
7 KOG1051|consensus 100.0 2.5E-41 5.4E-46 365.8 22.9 321 237-581 533-858 (898)
8 PRK10865 protein disaggregatio 100.0 2.4E-40 5.1E-45 372.1 28.5 315 234-579 536-852 (857)
9 KOG4412|consensus 100.0 3.1E-36 6.6E-41 259.2 13.1 179 26-232 34-214 (226)
10 PHA02791 ankyrin-like protein; 100.0 4.6E-34 1E-38 281.2 20.5 207 10-251 13-223 (284)
11 KOG4412|consensus 100.0 4E-34 8.6E-39 246.2 10.6 202 30-262 3-208 (226)
12 PHA02874 ankyrin repeat protei 100.0 1.2E-31 2.7E-36 285.4 23.0 247 9-266 14-296 (434)
13 PHA02875 ankyrin repeat protei 100.0 2.5E-31 5.3E-36 281.8 22.7 227 8-263 14-243 (413)
14 TIGR00382 clpX endopeptidase C 100.0 5E-31 1.1E-35 269.4 23.6 274 259-560 68-389 (413)
15 PHA02791 ankyrin-like protein; 100.0 3.8E-31 8.2E-36 260.6 21.6 204 7-249 41-247 (284)
16 PHA03100 ankyrin repeat protei 100.0 2.8E-31 6.1E-36 287.3 22.7 238 22-268 27-293 (480)
17 PHA03100 ankyrin repeat protei 100.0 1.6E-31 3.4E-36 289.3 20.7 238 6-250 45-311 (480)
18 COG3604 FhlA Transcriptional r 100.0 2.5E-31 5.4E-36 265.7 15.5 228 269-555 224-456 (550)
19 PHA03095 ankyrin-like protein; 100.0 1.5E-30 3.2E-35 281.1 22.7 247 11-267 29-299 (471)
20 COG3829 RocR Transcriptional r 100.0 4.5E-31 9.8E-36 267.9 17.0 228 268-553 245-477 (560)
21 KOG0510|consensus 100.0 6.1E-31 1.3E-35 273.4 17.9 233 15-250 139-405 (929)
22 PHA02878 ankyrin repeat protei 100.0 1.4E-30 3E-35 280.6 21.5 234 23-267 30-309 (477)
23 PHA02716 CPXV016; CPX019; EVM0 100.0 7.6E-31 1.7E-35 285.2 19.3 238 11-250 194-568 (764)
24 PHA02876 ankyrin repeat protei 100.0 5.1E-30 1.1E-34 288.1 24.6 242 16-266 164-450 (682)
25 PHA03095 ankyrin-like protein; 100.0 7.1E-30 1.5E-34 275.7 23.7 235 8-249 62-317 (471)
26 PHA02946 ankyin-like protein; 100.0 7.4E-30 1.6E-34 269.8 23.0 226 11-245 54-320 (446)
27 PHA02989 ankyrin repeat protei 100.0 8.4E-30 1.8E-34 275.4 22.0 234 10-247 17-314 (494)
28 PHA02716 CPXV016; CPX019; EVM0 100.0 8.6E-30 1.9E-34 277.0 21.1 196 10-211 156-425 (764)
29 PRK05342 clpX ATP-dependent pr 100.0 3E-29 6.5E-34 258.4 24.1 291 258-577 61-397 (412)
30 COG2204 AtoC Response regulato 100.0 1.4E-30 3.1E-35 265.8 13.9 236 267-560 140-379 (464)
31 PHA02946 ankyin-like protein; 100.0 3.7E-30 7.9E-35 272.1 16.7 203 30-266 37-250 (446)
32 KOG0510|consensus 100.0 3.9E-30 8.3E-35 267.5 15.5 296 24-355 82-404 (929)
33 PHA02798 ankyrin-like protein; 100.0 1.2E-29 2.6E-34 273.9 19.8 221 28-249 34-318 (489)
34 PHA02878 ankyrin repeat protei 100.0 2.7E-29 5.8E-34 270.7 21.5 233 4-246 45-325 (477)
35 KOG0509|consensus 100.0 1.9E-30 4.1E-35 265.4 11.5 200 31-262 45-249 (600)
36 PHA02874 ankyrin repeat protei 100.0 9.5E-29 2.1E-33 263.3 22.8 236 5-249 44-316 (434)
37 KOG0509|consensus 100.0 2.2E-29 4.7E-34 257.7 15.6 195 11-232 59-255 (600)
38 PHA02875 ankyrin repeat protei 100.0 1.5E-28 3.2E-33 260.5 22.0 198 6-231 45-247 (413)
39 PHA02859 ankyrin repeat protei 100.0 1.1E-28 2.5E-33 234.5 17.4 175 27-233 18-203 (209)
40 PHA02876 ankyrin repeat protei 100.0 2.3E-28 5E-33 274.7 22.4 253 4-266 186-484 (682)
41 KOG0508|consensus 100.0 1.2E-28 2.7E-33 241.4 11.5 198 27-246 39-239 (615)
42 PHA02917 ankyrin-like protein; 99.9 8.4E-27 1.8E-31 255.7 21.5 217 24-247 26-301 (661)
43 PHA02798 ankyrin-like protein; 99.9 8.8E-27 1.9E-31 251.6 19.1 189 71-267 56-300 (489)
44 KOG0508|consensus 99.9 2.7E-27 5.8E-32 232.1 11.4 216 36-281 10-235 (615)
45 PHA02795 ankyrin-like protein; 99.9 1.4E-26 3.1E-31 236.3 16.8 189 36-249 83-289 (437)
46 PHA02859 ankyrin repeat protei 99.9 2.8E-26 6.1E-31 218.1 14.5 176 83-270 18-204 (209)
47 PHA02989 ankyrin repeat protei 99.9 7E-26 1.5E-30 244.9 18.7 219 39-267 12-298 (494)
48 KOG4177|consensus 99.9 1E-26 2.3E-31 257.2 10.9 219 23-247 400-631 (1143)
49 KOG4177|consensus 99.9 1.9E-26 4.1E-31 255.2 12.0 237 22-267 366-615 (1143)
50 PHA02792 ankyrin-like protein; 99.9 5E-25 1.1E-29 232.9 20.5 255 5-267 81-452 (631)
51 PF07724 AAA_2: AAA domain (Cd 99.9 6.7E-26 1.5E-30 206.5 11.3 154 296-487 1-171 (171)
52 TIGR02974 phageshock_pspF psp 99.9 6.1E-25 1.3E-29 222.1 18.1 226 270-554 1-232 (329)
53 PHA02730 ankyrin-like protein; 99.9 7.7E-25 1.7E-29 234.0 18.7 207 14-243 25-258 (672)
54 KOG0502|consensus 99.9 2.1E-25 4.6E-30 198.1 10.9 213 28-249 60-285 (296)
55 PLN03192 Voltage-dependent pot 99.9 9.5E-25 2.1E-29 248.7 19.3 171 30-229 525-696 (823)
56 COG1221 PspF Transcriptional r 99.9 3E-24 6.6E-29 215.8 17.3 230 265-555 75-309 (403)
57 COG1219 ClpX ATP-dependent pro 99.9 3E-23 6.5E-28 195.9 22.2 277 258-559 51-371 (408)
58 PHA02795 ankyrin-like protein; 99.9 2.3E-24 5.1E-29 220.1 13.9 193 67-268 63-264 (437)
59 PHA02917 ankyrin-like protein; 99.9 4.3E-24 9.3E-29 234.4 16.7 201 43-249 12-257 (661)
60 PHA02730 ankyrin-like protein; 99.9 1.7E-23 3.7E-28 223.7 20.6 233 9-249 215-525 (672)
61 PRK15424 propionate catabolism 99.9 1.7E-23 3.6E-28 222.0 20.3 225 269-553 220-463 (538)
62 COG3283 TyrR Transcriptional r 99.9 1.8E-23 4E-28 200.0 18.4 224 268-553 204-430 (511)
63 TIGR01817 nifA Nif-specific re 99.9 5.9E-23 1.3E-27 223.2 23.1 227 269-554 197-427 (534)
64 TIGR02329 propionate_PrpR prop 99.9 2.1E-23 4.6E-28 221.8 18.6 226 269-554 213-449 (526)
65 PRK05022 anaerobic nitric oxid 99.9 1E-22 2.2E-27 219.2 23.2 229 269-555 188-420 (509)
66 PRK11608 pspF phage shock prot 99.9 5.5E-23 1.2E-27 208.2 19.7 229 269-554 7-239 (326)
67 PLN03192 Voltage-dependent pot 99.9 1.1E-23 2.3E-28 240.2 15.5 162 82-251 521-684 (823)
68 KOG0514|consensus 99.9 4.3E-24 9.2E-29 203.5 9.7 161 78-244 260-429 (452)
69 PRK10820 DNA-binding transcrip 99.9 9.6E-23 2.1E-27 219.2 19.4 227 269-554 205-436 (520)
70 KOG0507|consensus 99.9 6.7E-23 1.5E-27 212.3 13.6 257 24-317 43-304 (854)
71 KOG0745|consensus 99.9 2.5E-22 5.3E-27 196.9 16.7 241 299-558 228-511 (564)
72 TIGR00870 trp transient-recept 99.9 1.4E-22 3E-27 229.9 15.2 189 26-246 48-281 (743)
73 PRK10787 DNA-binding ATP-depen 99.9 2.2E-21 4.7E-26 215.7 23.0 299 236-605 293-602 (784)
74 PHA02743 Viral ankyrin protein 99.9 3.8E-22 8.2E-27 182.6 14.0 144 75-224 9-163 (166)
75 PRK11388 DNA-binding transcrip 99.9 8.7E-22 1.9E-26 218.8 19.4 224 269-553 326-552 (638)
76 KOG0502|consensus 99.9 3.6E-22 7.8E-27 177.6 12.5 236 22-266 23-267 (296)
77 PHA02792 ankyrin-like protein; 99.9 1.4E-21 3.1E-26 206.8 18.3 217 24-248 169-479 (631)
78 PRK05201 hslU ATP-dependent pr 99.9 9.7E-22 2.1E-26 197.6 15.6 246 260-559 7-410 (443)
79 PRK10923 glnG nitrogen regulat 99.9 1.2E-21 2.6E-26 210.9 17.1 228 269-555 139-371 (469)
80 COG0466 Lon ATP-dependent Lon 99.9 2.6E-21 5.6E-26 201.9 18.3 303 235-606 293-605 (782)
81 TIGR00763 lon ATP-dependent pr 99.9 4.4E-21 9.6E-26 215.8 21.7 285 258-605 310-606 (775)
82 KOG0505|consensus 99.9 1E-21 2.2E-26 197.3 14.3 189 34-251 44-260 (527)
83 PRK15429 formate hydrogenlyase 99.9 6.5E-21 1.4E-25 213.0 22.1 227 269-554 377-608 (686)
84 PF00158 Sigma54_activat: Sigm 99.9 2.4E-21 5.2E-26 176.0 14.0 148 270-426 1-149 (168)
85 PHA02741 hypothetical protein; 99.9 2.3E-21 5.1E-26 178.3 12.7 132 80-246 15-156 (169)
86 TIGR00870 trp transient-recept 99.9 5.2E-21 1.1E-25 217.0 18.0 212 28-265 15-264 (743)
87 TIGR00390 hslU ATP-dependent p 99.9 8.5E-21 1.8E-25 190.8 17.3 246 261-559 5-408 (441)
88 COG3284 AcoR Transcriptional a 99.9 2E-21 4.3E-26 201.7 12.5 218 272-552 317-537 (606)
89 PHA02884 ankyrin repeat protei 99.9 1.2E-20 2.6E-25 185.9 15.8 155 79-247 25-187 (300)
90 TIGR02915 PEP_resp_reg putativ 99.8 2.4E-20 5.1E-25 199.6 19.2 227 269-554 140-371 (445)
91 KOG0512|consensus 99.8 6.6E-21 1.4E-25 163.4 11.8 144 88-236 65-212 (228)
92 KOG0514|consensus 99.8 9.2E-21 2E-25 180.8 10.5 159 24-211 262-429 (452)
93 KOG0505|consensus 99.8 2.5E-20 5.3E-25 187.4 13.4 201 88-300 42-270 (527)
94 TIGR01818 ntrC nitrogen regula 99.8 6.2E-20 1.3E-24 197.5 17.1 228 269-555 135-367 (463)
95 PHA02743 Viral ankyrin protein 99.8 1.2E-20 2.7E-25 172.6 9.8 137 111-251 11-157 (166)
96 PRK15115 response regulator Gl 99.8 1.2E-19 2.5E-24 194.2 18.6 228 269-554 135-366 (444)
97 PRK11361 acetoacetate metaboli 99.8 2.1E-19 4.5E-24 193.1 19.6 227 269-554 144-375 (457)
98 PHA02736 Viral ankyrin protein 99.8 2.1E-20 4.6E-25 169.5 9.8 131 79-216 10-153 (154)
99 PHA02741 hypothetical protein; 99.8 1.1E-19 2.3E-24 167.3 13.9 137 24-214 15-157 (169)
100 KOG0195|consensus 99.8 9.8E-21 2.1E-25 175.0 5.5 134 94-232 8-143 (448)
101 KOG2004|consensus 99.8 1.6E-19 3.4E-24 187.3 14.4 281 263-606 406-727 (906)
102 PHA02884 ankyrin repeat protei 99.8 1.2E-19 2.7E-24 178.7 12.7 124 115-242 27-157 (300)
103 PHA02736 Viral ankyrin protein 99.8 3.8E-20 8.3E-25 167.8 7.3 130 113-248 10-152 (154)
104 TIGR02880 cbbX_cfxQ probable R 99.8 3.3E-18 7E-23 169.8 20.8 225 257-562 11-260 (284)
105 KOG2170|consensus 99.8 1.9E-18 4.1E-23 162.9 16.1 240 258-532 72-316 (344)
106 PRK10365 transcriptional regul 99.8 2.3E-18 4.9E-23 184.3 18.1 227 270-554 141-371 (441)
107 KOG0507|consensus 99.8 2.2E-19 4.8E-24 186.4 9.6 197 4-231 57-263 (854)
108 CHL00181 cbbX CbbX; Provisiona 99.8 1E-17 2.2E-22 166.1 20.1 225 257-562 12-261 (287)
109 KOG4369|consensus 99.8 2.3E-19 5E-24 191.1 5.9 217 29-250 756-987 (2131)
110 KOG0512|consensus 99.8 5E-18 1.1E-22 145.8 10.9 139 34-200 67-209 (228)
111 KOG3676|consensus 99.7 6.8E-18 1.5E-22 178.0 11.4 200 26-244 97-330 (782)
112 PF12796 Ank_2: Ankyrin repeat 99.7 3.1E-17 6.8E-22 133.8 10.1 89 90-219 1-89 (89)
113 KOG4369|consensus 99.7 6.9E-18 1.5E-22 180.1 7.6 237 25-268 819-1070(2131)
114 COG1220 HslU ATP-dependent pro 99.7 1.5E-16 3.2E-21 152.0 13.9 160 370-582 250-430 (444)
115 TIGR02881 spore_V_K stage V sp 99.7 8.4E-16 1.8E-20 151.6 18.3 216 269-565 7-248 (261)
116 PTZ00322 6-phosphofructo-2-kin 99.7 4.5E-16 9.8E-21 172.6 17.2 150 88-323 84-241 (664)
117 TIGR02902 spore_lonB ATP-depen 99.7 1.4E-15 2.9E-20 163.8 19.0 212 269-553 66-310 (531)
118 KOG0195|consensus 99.7 1.8E-16 3.9E-21 147.0 9.3 135 78-218 26-162 (448)
119 PF12796 Ank_2: Ankyrin repeat 99.7 3.4E-16 7.5E-21 127.6 9.8 64 86-150 26-89 (89)
120 cd00204 ANK ankyrin repeats; 99.6 1.3E-15 2.8E-20 132.3 11.7 123 82-241 3-125 (126)
121 cd00204 ANK ankyrin repeats; 99.6 2.6E-15 5.7E-20 130.3 13.6 89 61-150 5-103 (126)
122 KOG4214|consensus 99.6 2E-15 4.3E-20 116.0 7.9 109 89-235 5-113 (117)
123 PF05496 RuvB_N: Holliday junc 99.6 4.3E-14 9.3E-19 130.6 17.3 177 268-533 24-209 (233)
124 KOG3676|consensus 99.6 1.4E-14 3E-19 153.3 11.4 161 26-211 139-330 (782)
125 COG0666 Arp FOG: Ankyrin repea 99.6 4.2E-14 9E-19 136.7 13.4 130 82-245 69-203 (235)
126 COG2256 MGS1 ATPase related to 99.5 7.8E-14 1.7E-18 137.5 13.6 190 268-551 24-216 (436)
127 COG4650 RtcR Sigma54-dependent 99.5 1.8E-13 3.8E-18 128.6 9.6 201 299-550 210-421 (531)
128 KOG1710|consensus 99.5 2.4E-13 5.1E-18 126.4 9.1 122 85-242 11-132 (396)
129 COG0666 Arp FOG: Ankyrin repea 99.4 1.3E-12 2.9E-17 126.1 14.8 129 24-212 67-203 (235)
130 KOG4214|consensus 99.4 6.3E-13 1.4E-17 102.3 8.4 94 32-150 4-97 (117)
131 PF13637 Ank_4: Ankyrin repeat 99.4 4.4E-13 9.6E-18 97.6 6.1 54 86-140 1-54 (54)
132 KOG0515|consensus 99.4 8.8E-13 1.9E-17 131.9 9.4 118 90-244 554-674 (752)
133 COG1222 RPT1 ATP-dependent 26S 99.4 9.5E-12 2.1E-16 120.9 15.8 163 269-504 152-333 (406)
134 TIGR02903 spore_lon_C ATP-depe 99.4 9.3E-12 2E-16 136.3 17.4 211 269-552 155-399 (615)
135 PF13857 Ank_5: Ankyrin repeat 99.4 1.7E-13 3.6E-18 100.3 2.5 55 170-229 1-56 (56)
136 PF10431 ClpB_D2-small: C-term 99.4 2.4E-12 5.2E-17 102.3 9.2 80 493-573 1-81 (81)
137 PRK13342 recombination factor 99.4 1.6E-11 3.4E-16 129.3 17.5 185 269-551 13-200 (413)
138 PRK13341 recombination factor 99.4 1.9E-11 4.2E-16 134.9 17.9 191 268-552 28-222 (725)
139 PF13637 Ank_4: Ankyrin repeat 99.3 7.1E-13 1.5E-17 96.4 4.1 54 189-242 1-54 (54)
140 PRK14956 DNA polymerase III su 99.3 1.9E-11 4E-16 127.0 15.8 197 268-552 18-227 (484)
141 TIGR02640 gas_vesic_GvpN gas v 99.3 1.9E-11 4.1E-16 120.5 13.9 113 299-420 23-160 (262)
142 PRK13531 regulatory ATPase Rav 99.3 4.3E-11 9.3E-16 123.8 16.1 139 261-419 13-155 (498)
143 PRK07003 DNA polymerase III su 99.3 3.7E-11 8.1E-16 129.3 15.8 193 268-549 16-222 (830)
144 TIGR00635 ruvB Holliday juncti 99.3 8.2E-11 1.8E-15 119.4 17.3 193 268-550 4-204 (305)
145 PF13857 Ank_5: Ankyrin repeat 99.3 3.4E-12 7.4E-17 93.3 4.7 47 105-151 1-47 (56)
146 PRK00080 ruvB Holliday junctio 99.3 1E-10 2.2E-15 119.6 16.3 193 268-550 25-225 (328)
147 PRK14960 DNA polymerase III su 99.3 9.1E-11 2E-15 125.1 16.0 195 268-550 15-222 (702)
148 COG1223 Predicted ATPase (AAA+ 99.3 2E-10 4.4E-15 106.6 15.9 199 268-562 121-338 (368)
149 PRK12323 DNA polymerase III su 99.3 8.4E-11 1.8E-15 125.1 15.2 185 268-533 16-213 (700)
150 PF14532 Sigma54_activ_2: Sigm 99.3 1.2E-11 2.6E-16 109.5 7.5 113 271-424 1-113 (138)
151 PLN03025 replication factor C 99.3 4.6E-11 1E-15 121.5 12.7 188 269-549 14-202 (319)
152 PRK14949 DNA polymerase III su 99.3 1.2E-10 2.6E-15 127.9 16.5 198 268-550 16-223 (944)
153 PRK14957 DNA polymerase III su 99.2 1.6E-10 3.5E-15 123.3 17.0 201 268-552 16-225 (546)
154 PRK14958 DNA polymerase III su 99.2 8.9E-11 1.9E-15 125.4 15.1 199 268-551 16-224 (509)
155 PRK14962 DNA polymerase III su 99.2 1.4E-10 3E-15 122.6 15.8 185 268-551 14-222 (472)
156 KOG0515|consensus 99.2 1.6E-11 3.4E-16 123.1 7.5 91 155-250 554-644 (752)
157 CHL00081 chlI Mg-protoporyphyr 99.2 1.2E-10 2.7E-15 117.2 14.0 178 268-505 17-231 (350)
158 KOG0730|consensus 99.2 1.1E-10 2.3E-15 122.1 13.8 204 267-561 433-658 (693)
159 KOG2028|consensus 99.2 8E-11 1.7E-15 114.2 11.8 173 299-550 164-339 (554)
160 TIGR02442 Cob-chelat-sub cobal 99.2 2E-10 4.3E-15 126.8 16.6 136 269-419 5-177 (633)
161 PRK07764 DNA polymerase III su 99.2 2.1E-10 4.5E-15 128.4 16.9 200 268-552 15-226 (824)
162 PRK12402 replication factor C 99.2 2.8E-10 6.1E-15 117.3 16.8 197 268-550 15-229 (337)
163 PHA02244 ATPase-like protein 99.2 7.5E-10 1.6E-14 110.7 18.9 134 269-420 97-230 (383)
164 PRK13407 bchI magnesium chelat 99.2 2.5E-10 5.4E-15 114.9 15.6 142 268-419 8-179 (334)
165 TIGR03420 DnaA_homol_Hda DnaA 99.2 1.3E-10 2.8E-15 112.6 12.5 163 297-550 38-204 (226)
166 PLN00020 ribulose bisphosphate 99.2 4.5E-10 9.7E-15 111.3 15.6 127 276-419 127-276 (413)
167 KOG0989|consensus 99.2 2.5E-10 5.3E-15 109.0 13.1 173 269-533 37-218 (346)
168 KOG1710|consensus 99.2 1.2E-10 2.5E-15 108.7 10.5 118 31-172 13-133 (396)
169 PTZ00322 6-phosphofructo-2-kin 99.2 8.9E-11 1.9E-15 130.6 11.6 95 32-150 84-185 (664)
170 PRK14961 DNA polymerase III su 99.2 5E-10 1.1E-14 115.8 16.3 200 268-551 16-224 (363)
171 PRK14964 DNA polymerase III su 99.2 5.7E-10 1.2E-14 117.4 16.7 186 268-552 13-222 (491)
172 CHL00195 ycf46 Ycf46; Provisio 99.2 2.4E-10 5.1E-15 120.9 13.8 195 269-555 229-444 (489)
173 PRK14951 DNA polymerase III su 99.2 4.4E-10 9.6E-15 121.5 15.9 199 268-549 16-227 (618)
174 PRK14952 DNA polymerase III su 99.2 8.2E-10 1.8E-14 119.0 17.8 199 268-551 13-223 (584)
175 PRK03992 proteasome-activating 99.2 6.7E-10 1.5E-14 115.6 16.4 204 268-555 131-352 (389)
176 PRK07994 DNA polymerase III su 99.2 5.1E-10 1.1E-14 121.3 15.7 193 268-548 16-221 (647)
177 PRK08691 DNA polymerase III su 99.2 5.2E-10 1.1E-14 120.6 15.6 198 268-552 16-225 (709)
178 PRK14959 DNA polymerase III su 99.2 7.5E-10 1.6E-14 118.9 16.4 198 268-550 16-223 (624)
179 PRK06645 DNA polymerase III su 99.1 1.1E-09 2.3E-14 116.3 17.0 200 268-552 21-234 (507)
180 PRK13765 ATP-dependent proteas 99.1 1.2E-09 2.5E-14 118.8 17.4 130 362-543 218-360 (637)
181 COG2255 RuvB Holliday junction 99.1 1.2E-09 2.5E-14 103.3 14.9 177 268-533 26-211 (332)
182 PHA02544 44 clamp loader, smal 99.1 2.7E-09 5.8E-14 108.9 18.7 186 268-549 21-211 (316)
183 PRK08903 DnaA regulatory inact 99.1 1.1E-09 2.5E-14 105.9 15.0 159 298-551 43-203 (227)
184 TIGR00764 lon_rel lon-related 99.1 1.6E-09 3.5E-14 118.3 17.3 133 363-550 210-366 (608)
185 TIGR02030 BchI-ChlI magnesium 99.1 7E-10 1.5E-14 112.0 13.2 141 269-419 5-182 (337)
186 KOG0736|consensus 99.1 1.7E-09 3.6E-14 114.6 15.7 213 266-560 670-900 (953)
187 PRK14963 DNA polymerase III su 99.1 2E-09 4.3E-14 114.9 16.6 199 268-551 14-221 (504)
188 PRK07940 DNA polymerase III su 99.1 4.3E-10 9.2E-15 116.2 11.1 167 267-503 4-186 (394)
189 TIGR00368 Mg chelatase-related 99.1 3.8E-09 8.2E-14 112.3 18.4 133 268-420 192-347 (499)
190 PTZ00454 26S protease regulato 99.1 2.3E-09 5E-14 111.0 16.1 205 268-556 145-367 (398)
191 PRK08451 DNA polymerase III su 99.1 2.2E-09 4.8E-14 114.0 16.2 196 268-551 14-222 (535)
192 PRK05563 DNA polymerase III su 99.1 2.7E-09 5.9E-14 115.7 16.6 199 268-551 16-224 (559)
193 PRK14965 DNA polymerase III su 99.1 2E-09 4.4E-14 117.2 15.5 198 268-550 16-223 (576)
194 PRK05896 DNA polymerase III su 99.1 2.9E-09 6.4E-14 113.8 16.2 198 268-550 16-223 (605)
195 PRK06305 DNA polymerase III su 99.1 3.3E-09 7.1E-14 112.2 16.2 198 268-550 17-225 (451)
196 PRK07133 DNA polymerase III su 99.1 4.2E-09 9.2E-14 114.8 17.3 198 268-550 18-222 (725)
197 TIGR02031 BchD-ChlD magnesium 99.1 1.9E-09 4.1E-14 117.7 14.6 193 299-548 18-228 (589)
198 PRK14969 DNA polymerase III su 99.0 2.6E-09 5.5E-14 115.1 14.5 199 268-550 16-223 (527)
199 PF07728 AAA_5: AAA domain (dy 99.0 5.8E-10 1.3E-14 99.0 8.0 114 299-422 1-125 (139)
200 CHL00176 ftsH cell division pr 99.0 6.3E-09 1.4E-13 113.8 17.5 199 269-551 184-399 (638)
201 PRK09111 DNA polymerase III su 99.0 1.5E-09 3.2E-14 117.8 12.5 198 268-551 24-237 (598)
202 PRK14955 DNA polymerase III su 99.0 4.2E-09 9.2E-14 110.2 15.6 197 268-550 16-231 (397)
203 KOG0733|consensus 99.0 4.1E-09 8.9E-14 109.0 14.8 209 267-562 510-740 (802)
204 PRK14953 DNA polymerase III su 99.0 2.1E-09 4.6E-14 114.2 13.2 199 268-551 16-224 (486)
205 PRK06647 DNA polymerase III su 99.0 7E-09 1.5E-13 112.1 17.2 196 268-551 16-224 (563)
206 TIGR01243 CDC48 AAA family ATP 99.0 3.5E-09 7.5E-14 119.8 15.3 204 267-560 452-677 (733)
207 PTZ00361 26 proteosome regulat 99.0 3.5E-09 7.6E-14 110.4 13.7 167 269-507 184-368 (438)
208 TIGR02397 dnaX_nterm DNA polym 99.0 9.1E-09 2E-13 106.9 16.9 196 268-551 14-222 (355)
209 TIGR01242 26Sp45 26S proteasom 99.0 5.9E-09 1.3E-13 108.2 15.3 205 268-556 122-344 (364)
210 PRK00440 rfc replication facto 99.0 1E-08 2.2E-13 104.8 16.6 183 269-550 18-206 (319)
211 PRK14970 DNA polymerase III su 99.0 7.3E-09 1.6E-13 107.8 15.4 186 268-552 17-214 (367)
212 PRK14954 DNA polymerase III su 99.0 1.1E-08 2.4E-13 111.2 17.1 197 268-550 16-231 (620)
213 KOG0727|consensus 99.0 2E-09 4.4E-14 99.4 9.1 103 297-419 189-302 (408)
214 PRK14971 DNA polymerase III su 99.0 1.1E-08 2.4E-13 111.8 16.2 196 268-551 17-226 (614)
215 PF07726 AAA_3: ATPase family 99.0 1.1E-09 2.4E-14 92.3 6.2 108 299-419 1-111 (131)
216 COG0714 MoxR-like ATPases [Gen 99.0 3.7E-09 8E-14 108.1 11.4 132 266-419 22-162 (329)
217 PF06309 Torsin: Torsin; Inte 99.0 4.5E-09 9.7E-14 88.4 9.7 112 258-376 15-127 (127)
218 KOG0738|consensus 99.0 6.7E-09 1.4E-13 102.0 12.2 114 268-395 212-341 (491)
219 TIGR02928 orc1/cdc6 family rep 98.9 2.1E-08 4.6E-13 104.5 16.6 218 269-552 16-251 (365)
220 COG2812 DnaX DNA polymerase II 98.9 2.9E-09 6.3E-14 111.7 9.9 201 268-553 16-226 (515)
221 PRK14948 DNA polymerase III su 98.9 2.1E-08 4.4E-13 109.7 16.6 197 268-550 16-225 (620)
222 PRK04195 replication factor C 98.9 1.5E-08 3.3E-13 108.9 15.3 185 269-549 15-204 (482)
223 PRK08084 DNA replication initi 98.9 1E-08 2.2E-13 99.3 12.7 163 299-551 47-213 (235)
224 PTZ00112 origin recognition co 98.9 1.5E-08 3.2E-13 110.1 14.8 213 268-552 755-986 (1164)
225 smart00763 AAA_PrkA PrkA AAA d 98.9 5.7E-08 1.2E-12 97.5 18.0 209 269-532 52-346 (361)
226 TIGR03689 pup_AAA proteasome A 98.9 1.2E-08 2.7E-13 107.8 13.9 165 269-507 183-379 (512)
227 PF01078 Mg_chelatase: Magnesi 98.9 2.8E-09 6.1E-14 98.3 8.0 130 269-421 4-159 (206)
228 PRK14950 DNA polymerase III su 98.9 2.5E-08 5.5E-13 109.3 16.8 195 268-550 16-224 (585)
229 COG0464 SpoVK ATPases of the A 98.9 6.4E-09 1.4E-13 112.7 11.3 178 297-559 276-466 (494)
230 TIGR01650 PD_CobS cobaltochela 98.9 1.1E-08 2.4E-13 101.5 11.9 111 299-419 66-186 (327)
231 TIGR01241 FtsH_fam ATP-depende 98.9 2.5E-08 5.4E-13 107.7 15.7 164 269-507 56-239 (495)
232 TIGR02639 ClpA ATP-dependent C 98.9 3.2E-08 6.9E-13 111.7 16.2 179 269-533 183-379 (731)
233 PF00004 AAA: ATPase family as 98.9 8.5E-09 1.9E-13 90.5 9.0 96 300-419 1-110 (132)
234 PRK08727 hypothetical protein; 98.9 5.7E-08 1.2E-12 94.0 15.2 163 299-552 43-209 (233)
235 smart00350 MCM minichromosome 98.9 1.9E-08 4E-13 108.6 12.9 147 261-419 196-351 (509)
236 PRK06893 DNA replication initi 98.9 1.8E-08 3.9E-13 97.3 11.4 163 299-551 41-207 (229)
237 PRK00411 cdc6 cell division co 98.8 7.1E-08 1.5E-12 101.7 16.7 212 268-550 30-257 (394)
238 PF13606 Ank_3: Ankyrin repeat 98.8 3.7E-09 8E-14 65.8 4.1 30 119-148 1-30 (30)
239 PRK11331 5-methylcytosine-spec 98.8 7.6E-08 1.6E-12 99.2 16.0 142 269-422 176-336 (459)
240 KOG0991|consensus 98.8 1E-08 2.2E-13 93.9 8.4 126 268-421 27-153 (333)
241 PTZ00111 DNA replication licen 98.8 4.6E-08 9.9E-13 108.4 15.1 148 262-420 444-609 (915)
242 PRK05642 DNA replication initi 98.8 4.8E-08 1E-12 94.5 13.2 163 299-552 47-213 (234)
243 KOG0734|consensus 98.8 4.9E-08 1.1E-12 99.6 13.5 130 268-420 304-448 (752)
244 KOG0733|consensus 98.8 2.3E-07 4.9E-12 96.4 18.4 127 269-420 191-338 (802)
245 PF13606 Ank_3: Ankyrin repeat 98.8 4E-09 8.7E-14 65.7 3.5 30 188-217 1-30 (30)
246 COG0606 Predicted ATPase with 98.8 7.3E-08 1.6E-12 98.3 13.6 136 268-421 179-336 (490)
247 KOG0818|consensus 98.8 1.1E-08 2.3E-13 102.4 7.3 92 154-249 136-227 (669)
248 PRK09862 putative ATP-dependen 98.8 5.9E-08 1.3E-12 102.7 13.1 133 269-421 192-347 (506)
249 PF00023 Ank: Ankyrin repeat H 98.8 7.8E-09 1.7E-13 66.4 4.1 33 188-220 1-33 (33)
250 KOG0728|consensus 98.8 5.1E-08 1.1E-12 90.2 10.9 162 270-504 149-329 (404)
251 COG1224 TIP49 DNA helicase TIP 98.8 8.7E-08 1.9E-12 93.4 12.9 100 371-533 292-391 (450)
252 KOG0783|consensus 98.8 2.1E-09 4.5E-14 113.5 1.5 81 113-198 45-128 (1267)
253 PRK09112 DNA polymerase III su 98.7 9E-08 2E-12 97.7 12.9 166 268-504 23-211 (351)
254 TIGR00362 DnaA chromosomal rep 98.7 5.9E-08 1.3E-12 102.3 12.0 173 299-552 138-315 (405)
255 TIGR03345 VI_ClpV1 type VI sec 98.7 3E-07 6.5E-12 104.6 18.3 179 269-533 188-384 (852)
256 COG1474 CDC6 Cdc6-related prot 98.7 2.9E-07 6.3E-12 94.3 16.0 196 269-533 18-222 (366)
257 PF00023 Ank: Ankyrin repeat H 98.7 1.7E-08 3.6E-13 64.9 4.3 32 119-150 1-32 (33)
258 cd00009 AAA The AAA+ (ATPases 98.7 1.4E-07 3.1E-12 84.0 11.9 109 298-419 20-128 (151)
259 PF13177 DNA_pol3_delta2: DNA 98.7 3.3E-08 7.1E-13 89.8 7.5 130 272-419 1-140 (162)
260 PRK12422 chromosomal replicati 98.7 1.6E-07 3.4E-12 99.1 13.3 172 299-552 143-318 (445)
261 CHL00206 ycf2 Ycf2; Provisiona 98.7 1.7E-07 3.7E-12 109.4 14.4 113 298-420 1631-1781(2281)
262 PRK14087 dnaA chromosomal repl 98.7 1.3E-07 2.8E-12 100.1 12.7 177 299-553 143-325 (450)
263 KOG0739|consensus 98.7 7.2E-08 1.6E-12 91.6 9.4 133 268-422 133-280 (439)
264 PRK07471 DNA polymerase III su 98.7 7.1E-08 1.5E-12 99.0 10.3 167 268-505 19-212 (365)
265 KOG0744|consensus 98.7 3.7E-08 8.1E-13 94.6 7.4 151 299-511 179-345 (423)
266 TIGR00678 holB DNA polymerase 98.7 4.6E-07 1E-11 84.8 14.8 155 298-533 15-179 (188)
267 PRK07399 DNA polymerase III su 98.7 1.2E-07 2.7E-12 95.3 11.5 165 268-505 4-194 (314)
268 KOG0506|consensus 98.7 2.5E-08 5.5E-13 99.4 5.7 92 83-211 503-595 (622)
269 PRK11034 clpA ATP-dependent Cl 98.7 3.3E-07 7.2E-12 102.2 14.9 185 269-532 187-382 (758)
270 PRK05564 DNA polymerase III su 98.7 1.8E-07 4E-12 95.0 12.0 121 268-419 4-131 (313)
271 PRK00149 dnaA chromosomal repl 98.6 5E-07 1.1E-11 96.5 15.5 173 299-552 150-327 (450)
272 PF00308 Bac_DnaA: Bacterial d 98.6 2.1E-07 4.6E-12 89.0 11.3 173 299-552 36-213 (219)
273 PF06068 TIP49: TIP49 C-termin 98.6 9.9E-08 2.2E-12 94.7 9.1 100 371-533 279-378 (398)
274 PRK14088 dnaA chromosomal repl 98.6 4.6E-07 1E-11 95.8 13.9 174 299-552 132-310 (440)
275 PRK08058 DNA polymerase III su 98.6 2.3E-07 5E-12 94.5 11.1 130 267-419 4-148 (329)
276 KOG0735|consensus 98.6 8.9E-07 1.9E-11 93.6 14.7 114 269-396 668-797 (952)
277 KOG3609|consensus 98.6 1.7E-07 3.6E-12 100.9 9.4 130 84-218 23-160 (822)
278 KOG0506|consensus 98.6 4.7E-08 1E-12 97.5 4.8 87 154-245 509-596 (622)
279 PRK04132 replication factor C 98.6 5.6E-07 1.2E-11 100.5 13.2 166 299-550 566-734 (846)
280 KOG0731|consensus 98.6 5.7E-07 1.2E-11 97.6 12.8 129 268-419 311-458 (774)
281 CHL00095 clpC Clp protease ATP 98.6 1.6E-06 3.5E-11 99.2 17.0 179 269-533 180-375 (821)
282 TIGR01243 CDC48 AAA family ATP 98.5 1.6E-06 3.4E-11 98.4 16.1 126 269-419 179-322 (733)
283 PRK10733 hflB ATP-dependent me 98.5 1.5E-06 3.2E-11 96.5 15.3 136 297-507 185-336 (644)
284 COG1239 ChlI Mg-chelatase subu 98.5 8.8E-07 1.9E-11 89.3 12.0 144 268-419 17-195 (423)
285 KOG0818|consensus 98.5 3.6E-07 7.8E-12 91.7 9.1 82 90-172 137-221 (669)
286 KOG0783|consensus 98.5 5.2E-08 1.1E-12 103.3 3.3 81 79-160 45-128 (1267)
287 PRK09087 hypothetical protein; 98.5 6E-07 1.3E-11 86.1 10.3 152 299-551 46-199 (226)
288 KOG0743|consensus 98.5 1.1E-06 2.3E-11 89.2 12.0 152 299-533 237-415 (457)
289 KOG0782|consensus 98.5 1.8E-07 4E-12 95.0 6.0 121 90-245 870-990 (1004)
290 PF05673 DUF815: Protein of un 98.5 5.3E-06 1.2E-10 78.4 15.1 180 268-507 27-208 (249)
291 KOG1942|consensus 98.5 2.5E-06 5.5E-11 81.0 12.5 117 371-555 297-413 (456)
292 PRK14086 dnaA chromosomal repl 98.4 1.3E-06 2.7E-11 93.9 11.8 173 299-552 316-493 (617)
293 PRK10865 protein disaggregatio 98.4 1.4E-06 3E-11 99.6 12.9 120 269-420 179-316 (857)
294 KOG0522|consensus 98.4 4.4E-07 9.6E-12 92.4 7.6 91 154-249 23-115 (560)
295 COG0470 HolB ATPase involved i 98.4 2.3E-06 5E-11 87.7 13.1 121 270-419 3-147 (325)
296 PRK06871 DNA polymerase III su 98.4 1.1E-06 2.5E-11 88.1 10.2 137 299-504 26-177 (325)
297 PRK06620 hypothetical protein; 98.4 5.8E-06 1.3E-10 78.6 14.3 61 478-550 130-192 (214)
298 TIGR03015 pepcterm_ATPase puta 98.4 1.5E-05 3.2E-10 79.3 17.9 188 299-553 45-244 (269)
299 KOG0705|consensus 98.4 3.3E-07 7.2E-12 93.7 5.7 93 154-247 627-719 (749)
300 TIGR03346 chaperone_ClpB ATP-d 98.4 3.3E-06 7.2E-11 96.9 14.0 178 269-532 174-369 (852)
301 PRK05707 DNA polymerase III su 98.4 3.1E-06 6.8E-11 85.7 11.9 138 299-505 24-177 (328)
302 PRK08769 DNA polymerase III su 98.4 1.4E-06 3.1E-11 87.3 9.1 127 273-419 9-151 (319)
303 KOG0652|consensus 98.4 2.6E-06 5.7E-11 79.5 10.0 128 269-419 172-318 (424)
304 KOG0726|consensus 98.3 1.3E-06 2.8E-11 82.9 7.7 127 270-419 187-332 (440)
305 KOG0705|consensus 98.3 1.4E-06 3E-11 89.3 8.1 63 83-146 658-720 (749)
306 KOG0729|consensus 98.3 2.6E-06 5.6E-11 79.9 8.8 129 269-420 178-325 (435)
307 KOG0651|consensus 98.3 1.7E-06 3.7E-11 83.0 7.3 103 295-420 164-280 (388)
308 COG1241 MCM2 Predicted ATPase 98.3 1.2E-05 2.7E-10 87.2 14.3 254 263-566 281-581 (682)
309 COG0465 HflB ATP-dependent Zn 98.3 6.2E-06 1.3E-10 88.1 11.7 131 268-421 150-298 (596)
310 KOG0522|consensus 98.3 1.9E-06 4.2E-11 87.9 7.5 87 88-210 22-109 (560)
311 KOG0782|consensus 98.3 1.2E-06 2.7E-11 89.1 5.8 96 77-172 890-988 (1004)
312 KOG0737|consensus 98.2 1.9E-05 4E-10 78.2 13.4 210 269-563 93-319 (386)
313 PRK07993 DNA polymerase III su 98.2 7.9E-06 1.7E-10 83.0 11.0 108 299-419 26-146 (334)
314 PRK06090 DNA polymerase III su 98.2 8.2E-06 1.8E-10 81.8 10.8 104 299-419 27-146 (319)
315 TIGR00602 rad24 checkpoint pro 98.2 1.2E-05 2.5E-10 87.8 12.7 51 268-322 84-135 (637)
316 PRK13406 bchD magnesium chelat 98.2 8.6E-06 1.9E-10 88.4 11.6 174 299-533 27-206 (584)
317 PRK06964 DNA polymerase III su 98.2 3.9E-06 8.4E-11 85.0 7.6 70 371-504 133-202 (342)
318 COG2607 Predicted ATPase (AAA+ 98.1 7.1E-05 1.5E-09 69.7 14.2 206 269-545 61-268 (287)
319 PRK15455 PrkA family serine pr 98.1 5.5E-05 1.2E-09 80.1 15.2 146 269-419 77-304 (644)
320 KOG0742|consensus 98.1 1.9E-05 4.1E-10 78.6 10.8 138 295-510 381-532 (630)
321 PRK12377 putative replication 98.1 2E-05 4.3E-10 76.3 11.0 109 298-427 102-212 (248)
322 PRK08116 hypothetical protein; 98.1 3.7E-05 8E-10 75.8 12.5 111 298-427 115-227 (268)
323 smart00382 AAA ATPases associa 98.1 7.5E-06 1.6E-10 72.2 6.7 119 298-420 3-125 (148)
324 KOG2035|consensus 98.1 3.4E-05 7.4E-10 73.1 10.8 110 299-420 36-166 (351)
325 KOG0521|consensus 98.1 2.1E-06 4.5E-11 95.5 3.1 87 150-241 655-741 (785)
326 KOG0732|consensus 98.1 3E-05 6.6E-10 86.9 12.1 130 269-419 266-414 (1080)
327 KOG0520|consensus 98.0 5.3E-06 1.1E-10 91.6 5.8 126 113-244 567-702 (975)
328 KOG0740|consensus 98.0 3.5E-05 7.5E-10 79.0 10.9 100 269-382 154-257 (428)
329 PRK08699 DNA polymerase III su 98.0 1.2E-05 2.7E-10 81.3 7.1 111 298-419 22-151 (325)
330 KOG2384|consensus 98.0 2.2E-05 4.8E-10 69.7 7.3 40 111-150 3-43 (223)
331 KOG0741|consensus 98.0 2.3E-05 4.9E-10 80.6 8.1 104 299-419 258-377 (744)
332 KOG0511|consensus 98.0 1.6E-05 3.4E-10 77.7 6.5 75 87-162 37-112 (516)
333 KOG2227|consensus 97.9 8.4E-05 1.8E-09 75.7 11.7 215 269-553 151-377 (529)
334 COG0542 clpA ATP-binding subun 97.9 0.00022 4.8E-09 78.5 15.7 112 270-399 172-300 (786)
335 COG0593 DnaA ATPase involved i 97.9 6.4E-05 1.4E-09 77.1 10.9 173 299-553 115-292 (408)
336 PF13173 AAA_14: AAA domain 97.9 5.9E-05 1.3E-09 65.6 9.2 91 299-419 4-97 (128)
337 PF12775 AAA_7: P-loop contain 97.9 0.00011 2.5E-09 72.5 11.6 115 299-419 35-156 (272)
338 PRK07276 DNA polymerase III su 97.9 8.9E-05 1.9E-09 73.2 10.4 127 272-419 6-142 (290)
339 KOG0521|consensus 97.9 1.1E-05 2.4E-10 89.8 4.4 86 119-209 655-742 (785)
340 KOG0511|consensus 97.9 8.7E-05 1.9E-09 72.7 9.7 69 123-227 39-107 (516)
341 PF00493 MCM: MCM2/3/5 family 97.9 2E-05 4.4E-10 80.3 5.8 249 262-562 18-311 (331)
342 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00033 7.1E-09 67.2 13.6 76 299-395 34-109 (231)
343 PRK05917 DNA polymerase III su 97.8 7.7E-05 1.7E-09 73.4 9.4 107 299-420 21-134 (290)
344 KOG0520|consensus 97.8 1.3E-05 2.9E-10 88.5 4.5 62 85-147 607-668 (975)
345 KOG3609|consensus 97.8 6E-05 1.3E-09 81.7 9.1 125 29-180 24-160 (822)
346 KOG0480|consensus 97.8 0.00026 5.6E-09 74.7 13.3 133 260-403 337-475 (764)
347 KOG0478|consensus 97.8 0.00017 3.7E-09 76.5 11.0 109 298-419 463-577 (804)
348 KOG2384|consensus 97.8 6.9E-05 1.5E-09 66.6 6.7 69 78-146 4-72 (223)
349 PF01637 Arch_ATPase: Archaeal 97.7 0.00018 3.9E-09 69.6 10.2 187 271-532 2-221 (234)
350 PRK06835 DNA replication prote 97.7 0.00019 4.1E-09 72.7 10.1 110 298-427 184-295 (329)
351 KOG1969|consensus 97.7 0.00039 8.5E-09 74.6 12.4 87 294-395 321-412 (877)
352 PRK06526 transposase; Provisio 97.7 7.1E-05 1.5E-09 73.1 6.4 106 298-427 99-207 (254)
353 PRK07952 DNA replication prote 97.6 0.00031 6.7E-09 67.9 9.9 108 299-427 101-211 (244)
354 PF05729 NACHT: NACHT domain 97.6 0.00066 1.4E-08 61.7 11.4 111 299-419 2-128 (166)
355 PRK07132 DNA polymerase III su 97.6 0.0014 3.1E-08 65.4 14.4 92 299-419 20-128 (299)
356 KOG0741|consensus 97.6 0.00071 1.5E-08 69.9 12.1 69 297-382 537-610 (744)
357 PF00910 RNA_helicase: RNA hel 97.5 0.00016 3.5E-09 60.6 5.7 98 300-419 1-106 (107)
358 PRK05818 DNA polymerase III su 97.5 0.0004 8.8E-09 66.8 9.0 105 297-419 7-126 (261)
359 COG1484 DnaC DNA replication p 97.5 0.00053 1.1E-08 67.0 9.9 109 297-428 105-216 (254)
360 PRK08181 transposase; Validate 97.5 0.00024 5.1E-09 69.8 7.2 106 299-427 108-215 (269)
361 PRK08939 primosomal protein Dn 97.5 0.00084 1.8E-08 67.5 11.1 109 298-428 157-268 (306)
362 KOG0990|consensus 97.5 0.00052 1.1E-08 66.8 9.0 121 269-420 42-170 (360)
363 PF01695 IstB_IS21: IstB-like 97.5 0.00014 2.9E-09 67.1 4.9 107 298-427 48-156 (178)
364 KOG0735|consensus 97.4 0.0031 6.8E-08 67.6 14.9 183 297-560 431-629 (952)
365 PF13401 AAA_22: AAA domain; P 97.4 0.00023 4.9E-09 62.1 5.4 97 299-395 6-113 (131)
366 KOG0730|consensus 97.4 0.0012 2.5E-08 70.4 11.1 102 297-421 218-330 (693)
367 PRK09183 transposase/IS protei 97.4 0.00063 1.4E-08 66.8 8.5 106 299-428 104-213 (259)
368 KOG2505|consensus 97.4 0.0004 8.7E-09 70.6 7.0 75 164-238 404-479 (591)
369 COG5271 MDN1 AAA ATPase contai 97.4 0.0014 3.1E-08 75.8 11.6 149 299-504 1545-1701(4600)
370 KOG1514|consensus 97.3 0.0039 8.5E-08 67.0 13.2 186 299-553 424-626 (767)
371 PF07693 KAP_NTPase: KAP famil 97.2 0.023 5.1E-07 58.0 18.1 45 295-339 18-64 (325)
372 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0052 1.1E-07 61.6 12.2 147 268-419 61-282 (358)
373 PRK06921 hypothetical protein; 97.1 0.0012 2.6E-08 65.0 7.4 107 298-427 118-231 (266)
374 COG5271 MDN1 AAA ATPase contai 97.0 0.0075 1.6E-07 70.3 12.8 109 299-419 890-1007(4600)
375 smart00248 ANK ankyrin repeats 97.0 0.0012 2.7E-08 39.7 4.1 28 120-147 2-29 (30)
376 PF03215 Rad17: Rad17 cell cyc 96.9 0.033 7E-07 60.1 16.1 52 269-323 20-71 (519)
377 PHA01747 putative ATP-dependen 96.9 0.0099 2.1E-07 59.4 10.9 106 296-423 189-303 (425)
378 smart00248 ANK ankyrin repeats 96.8 0.0016 3.5E-08 39.1 3.5 28 189-216 2-29 (30)
379 PF00931 NB-ARC: NB-ARC domain 96.7 0.011 2.4E-07 59.3 10.6 125 275-419 3-137 (287)
380 TIGR02688 conserved hypothetic 96.7 0.0079 1.7E-07 61.9 9.3 100 298-422 210-314 (449)
381 PRK10536 hypothetical protein; 96.7 0.01 2.2E-07 57.3 9.4 93 299-395 76-201 (262)
382 KOG0477|consensus 96.7 0.0054 1.2E-07 64.7 7.8 140 267-419 448-597 (854)
383 KOG0479|consensus 96.7 0.0087 1.9E-07 62.8 9.1 141 262-419 295-449 (818)
384 KOG0482|consensus 96.6 0.01 2.2E-07 61.3 9.4 128 261-402 335-471 (721)
385 PF13191 AAA_16: AAA ATPase do 96.6 0.0039 8.6E-08 57.8 5.8 62 270-337 2-63 (185)
386 COG1618 Predicted nucleotide k 96.4 0.0083 1.8E-07 52.8 6.2 101 297-397 5-130 (179)
387 PRK14974 cell division protein 96.4 0.13 2.8E-06 52.3 15.6 120 295-425 138-269 (336)
388 KOG2680|consensus 96.4 0.021 4.5E-07 55.2 9.2 100 371-533 289-388 (454)
389 PF03969 AFG1_ATPase: AFG1-lik 96.3 0.018 3.8E-07 59.3 9.2 112 296-430 61-177 (362)
390 PRK04296 thymidine kinase; Pro 96.3 0.013 2.8E-07 54.7 7.5 95 299-394 4-102 (190)
391 KOG0736|consensus 96.3 0.027 5.9E-07 61.3 10.6 99 299-420 433-542 (953)
392 PF00448 SRP54: SRP54-type pro 96.2 0.019 4.1E-07 53.8 7.9 121 297-427 1-132 (196)
393 PF10923 DUF2791: P-loop Domai 96.2 0.48 1E-05 49.4 18.6 80 478-562 318-400 (416)
394 PRK12723 flagellar biosynthesi 96.2 0.069 1.5E-06 55.4 12.6 125 295-430 172-307 (388)
395 PF05970 PIF1: PIF1-like helic 96.0 0.038 8.3E-07 57.3 10.1 134 273-419 6-149 (364)
396 PRK11889 flhF flagellar biosyn 95.9 0.16 3.5E-06 52.2 13.5 122 295-429 239-371 (436)
397 PRK06581 DNA polymerase III su 95.9 0.059 1.3E-06 51.2 9.6 100 299-419 17-127 (263)
398 PF02562 PhoH: PhoH-like prote 95.9 0.049 1.1E-06 51.0 8.9 25 371-395 120-144 (205)
399 COG1485 Predicted ATPase [Gene 95.8 0.05 1.1E-06 54.3 9.2 110 298-431 66-181 (367)
400 PF05621 TniB: Bacterial TniB 95.8 0.083 1.8E-06 52.1 10.5 126 268-395 34-173 (302)
401 KOG2505|consensus 95.7 0.012 2.7E-07 60.2 4.6 42 86-128 430-471 (591)
402 PF03266 NTPase_1: NTPase; In 95.7 0.037 8E-07 50.4 7.4 23 299-321 1-23 (168)
403 KOG0481|consensus 95.7 0.021 4.5E-07 59.1 6.2 137 266-419 329-479 (729)
404 cd01120 RecA-like_NTPases RecA 95.5 0.024 5.2E-07 51.1 5.6 34 300-334 2-35 (165)
405 cd01131 PilT Pilus retraction 95.5 0.068 1.5E-06 50.3 8.7 93 299-397 3-99 (198)
406 PRK05703 flhF flagellar biosyn 95.5 0.66 1.4E-05 49.1 16.8 120 299-429 223-351 (424)
407 PF13604 AAA_30: AAA domain; P 95.5 0.05 1.1E-06 51.0 7.5 90 299-396 20-119 (196)
408 TIGR02858 spore_III_AA stage I 95.4 0.068 1.5E-06 52.7 8.7 93 299-395 113-217 (270)
409 cd03216 ABC_Carb_Monos_I This 95.4 0.023 4.9E-07 51.6 5.0 94 299-395 28-126 (163)
410 PRK12724 flagellar biosynthesi 95.4 0.73 1.6E-05 48.0 16.0 126 296-430 222-354 (432)
411 PF03158 DUF249: Multigene fam 95.3 0.064 1.4E-06 48.2 7.2 141 87-243 47-191 (192)
412 COG3267 ExeA Type II secretory 95.3 0.17 3.6E-06 48.4 10.2 191 271-532 34-232 (269)
413 PRK14722 flhF flagellar biosyn 95.1 0.61 1.3E-05 48.1 14.6 125 297-432 137-269 (374)
414 TIGR01420 pilT_fam pilus retra 94.9 0.095 2.1E-06 53.9 8.1 95 299-397 124-220 (343)
415 PRK00771 signal recognition pa 94.9 0.34 7.3E-06 51.2 12.3 119 295-425 93-222 (437)
416 PRK06995 flhF flagellar biosyn 94.8 0.73 1.6E-05 49.2 14.7 123 297-429 256-385 (484)
417 TIGR01425 SRP54_euk signal rec 94.8 0.5 1.1E-05 49.6 13.2 119 295-425 98-229 (429)
418 PHA02774 E1; Provisional 94.8 0.26 5.6E-06 53.1 11.2 97 299-423 436-535 (613)
419 KOG3347|consensus 94.8 0.074 1.6E-06 46.2 5.8 90 299-419 9-102 (176)
420 PF05272 VirE: Virulence-assoc 94.7 0.19 4.2E-06 47.0 9.0 93 298-420 53-149 (198)
421 COG1373 Predicted ATPase (AAA+ 94.6 0.31 6.8E-06 51.1 11.2 80 299-398 39-121 (398)
422 PF05609 LAP1C: Lamina-associa 94.5 0.44 9.5E-06 49.9 11.7 141 263-422 254-398 (465)
423 PF13207 AAA_17: AAA domain; P 94.4 0.038 8.2E-07 47.2 3.3 23 299-321 1-23 (121)
424 TIGR01618 phage_P_loop phage n 94.3 0.044 9.6E-07 52.0 3.7 22 297-318 12-33 (220)
425 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.3 0.11 2.5E-06 46.0 6.2 86 299-396 28-115 (144)
426 TIGR01447 recD exodeoxyribonuc 94.2 0.22 4.7E-06 54.8 9.3 92 299-395 162-284 (586)
427 PRK06696 uridine kinase; Valid 94.2 0.17 3.7E-06 48.6 7.6 59 276-340 6-64 (223)
428 PF01583 APS_kinase: Adenylyls 94.1 0.078 1.7E-06 47.3 4.6 41 296-337 1-41 (156)
429 KOG2543|consensus 94.0 0.49 1.1E-05 47.8 10.4 118 269-395 7-143 (438)
430 cd03214 ABC_Iron-Siderophores_ 94.0 0.18 3.8E-06 46.6 7.1 95 299-396 27-142 (180)
431 COG1643 HrpA HrpA-like helicas 94.0 0.3 6.6E-06 55.4 10.1 120 299-429 67-214 (845)
432 PRK10867 signal recognition pa 94.0 1.5 3.2E-05 46.3 14.6 120 295-425 98-230 (433)
433 COG4178 ABC-type uncharacteriz 93.9 0.38 8.3E-06 52.2 10.4 110 299-420 421-573 (604)
434 PF01443 Viral_helicase1: Vira 93.9 0.13 2.8E-06 49.7 6.3 26 370-395 62-87 (234)
435 PF09848 DUF2075: Uncharacteri 93.9 0.14 3E-06 53.0 6.8 23 299-321 3-25 (352)
436 COG3854 SpoIIIAA ncharacterize 93.8 0.12 2.6E-06 48.4 5.4 96 299-397 139-243 (308)
437 KOG2228|consensus 93.8 1 2.2E-05 44.8 12.0 45 373-424 140-185 (408)
438 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.13 2.7E-06 46.4 5.6 94 299-395 27-124 (157)
439 PRK14721 flhF flagellar biosyn 93.7 1.4 3.1E-05 46.2 13.9 123 297-430 191-321 (420)
440 PRK12727 flagellar biosynthesi 93.6 3.4 7.4E-05 44.5 16.5 120 298-428 351-477 (559)
441 PF12780 AAA_8: P-loop contain 93.6 0.56 1.2E-05 46.2 10.1 107 270-402 10-121 (268)
442 PTZ00293 thymidine kinase; Pro 93.5 0.16 3.4E-06 47.7 5.7 95 299-398 6-104 (211)
443 PF06128 Shigella_OspC: Shigel 93.4 0.4 8.8E-06 44.5 8.0 96 30-145 179-279 (284)
444 cd03281 ABC_MSH5_euk MutS5 hom 93.4 0.2 4.3E-06 47.7 6.5 23 298-320 30-52 (213)
445 TIGR03499 FlhF flagellar biosy 93.3 0.4 8.6E-06 47.8 8.8 27 296-322 193-219 (282)
446 PF13337 Lon_2: Putative ATP-d 93.3 0.058 1.3E-06 56.0 2.8 100 298-421 209-311 (457)
447 cd03246 ABCC_Protease_Secretio 93.3 0.22 4.7E-06 45.7 6.5 95 299-396 30-141 (173)
448 TIGR01448 recD_rel helicase, p 93.3 0.27 5.8E-06 55.7 8.4 91 299-395 340-441 (720)
449 PRK12726 flagellar biosynthesi 93.3 3.5 7.6E-05 42.5 15.3 120 296-428 205-335 (407)
450 COG1124 DppF ABC-type dipeptid 93.2 0.31 6.8E-06 46.2 7.2 23 299-321 35-57 (252)
451 PRK00131 aroK shikimate kinase 93.1 0.11 2.5E-06 47.4 4.3 26 297-322 4-29 (175)
452 cd03285 ABC_MSH2_euk MutS2 hom 93.1 0.14 3E-06 49.1 4.9 84 299-382 32-121 (222)
453 PLN03210 Resistant to P. syrin 93.0 1.8 3.9E-05 52.3 15.3 49 269-323 185-233 (1153)
454 cd03223 ABCD_peroxisomal_ALDP 92.9 0.44 9.5E-06 43.3 7.8 95 299-396 29-136 (166)
455 PRK10875 recD exonuclease V su 92.9 0.36 7.8E-06 53.4 8.4 93 299-396 169-291 (615)
456 COG1419 FlhF Flagellar GTP-bin 92.9 1.9 4.2E-05 44.4 12.9 124 297-432 203-335 (407)
457 PF13671 AAA_33: AAA domain; P 92.9 0.087 1.9E-06 46.4 3.1 23 299-321 1-23 (143)
458 PRK10416 signal recognition pa 92.9 1 2.2E-05 45.7 11.0 127 296-427 113-251 (318)
459 TIGR00959 ffh signal recogniti 92.9 1.3 2.8E-05 46.8 12.1 121 295-425 97-229 (428)
460 PRK08118 topology modulation p 92.9 0.1 2.2E-06 47.5 3.5 25 299-323 3-27 (167)
461 KOG0922|consensus 92.8 0.6 1.3E-05 50.4 9.5 121 299-431 68-216 (674)
462 cd03222 ABC_RNaseL_inhibitor T 92.8 0.18 3.9E-06 46.4 5.0 87 299-395 27-115 (177)
463 PRK13695 putative NTPase; Prov 92.6 1.1 2.4E-05 41.0 10.0 24 299-322 2-25 (174)
464 KOG1808|consensus 92.6 0.54 1.2E-05 57.2 9.7 98 298-405 441-543 (1856)
465 COG0529 CysC Adenylylsulfate k 92.5 0.2 4.2E-06 45.1 4.6 39 296-335 22-60 (197)
466 PF06128 Shigella_OspC: Shigel 92.5 0.46 9.9E-06 44.1 7.0 115 88-213 155-278 (284)
467 cd03282 ABC_MSH4_euk MutS4 hom 92.4 0.21 4.6E-06 47.1 5.1 23 299-321 31-53 (204)
468 cd03115 SRP The signal recogni 92.3 0.98 2.1E-05 41.3 9.4 38 299-337 2-39 (173)
469 PRK05541 adenylylsulfate kinas 92.3 0.21 4.6E-06 45.9 4.8 37 296-333 6-42 (176)
470 cd03247 ABCC_cytochrome_bd The 92.2 0.38 8.3E-06 44.3 6.5 95 299-396 30-143 (178)
471 PRK06547 hypothetical protein; 92.1 0.18 4E-06 46.1 4.1 27 295-321 13-39 (172)
472 cd03228 ABCC_MRP_Like The MRP 92.1 0.47 1E-05 43.4 6.9 95 299-396 30-141 (171)
473 cd01124 KaiC KaiC is a circadi 92.1 0.28 6E-06 45.5 5.5 24 300-323 2-25 (187)
474 PF13238 AAA_18: AAA domain; P 92.1 0.13 2.9E-06 44.1 3.1 22 300-321 1-22 (129)
475 PF04665 Pox_A32: Poxvirus A32 92.0 2.3 5E-05 40.9 11.6 27 297-323 13-39 (241)
476 cd02019 NK Nucleoside/nucleoti 91.9 0.16 3.4E-06 38.5 3.0 22 300-321 2-23 (69)
477 KOG2383|consensus 91.9 0.22 4.7E-06 50.5 4.7 120 297-431 114-244 (467)
478 TIGR01613 primase_Cterm phage/ 91.8 2.1 4.5E-05 43.3 11.8 45 276-322 57-101 (304)
479 TIGR01967 DEAH_box_HrpA ATP-de 91.8 1.1 2.4E-05 53.4 10.9 118 299-428 84-229 (1283)
480 PRK04220 2-phosphoglycerate ki 91.8 0.32 7E-06 48.3 5.7 29 295-323 90-118 (301)
481 PF03158 DUF249: Multigene fam 91.8 0.59 1.3E-05 42.2 6.7 137 31-210 47-191 (192)
482 PRK07667 uridine kinase; Provi 91.7 0.46 1E-05 44.4 6.5 41 297-338 17-57 (193)
483 COG0378 HypB Ni2+-binding GTPa 91.7 0.34 7.3E-06 44.4 5.2 52 294-345 9-61 (202)
484 PRK06762 hypothetical protein; 91.6 0.17 3.7E-06 46.0 3.4 25 297-321 2-26 (166)
485 cd03227 ABC_Class2 ABC-type Cl 91.6 0.65 1.4E-05 42.0 7.2 26 298-323 22-47 (162)
486 TIGR00064 ftsY signal recognit 91.6 1.9 4.1E-05 42.6 10.9 127 295-426 70-208 (272)
487 cd03215 ABC_Carb_Monos_II This 91.6 0.42 9.1E-06 44.2 6.0 24 299-322 28-51 (182)
488 cd03243 ABC_MutS_homologs The 91.5 0.24 5.2E-06 46.7 4.3 22 299-320 31-52 (202)
489 PRK05800 cobU adenosylcobinami 91.4 0.46 1E-05 43.3 6.0 23 299-321 3-25 (170)
490 PRK08485 DNA polymerase III su 91.4 0.64 1.4E-05 43.0 6.7 38 372-420 56-93 (206)
491 PRK09435 membrane ATPase/prote 91.4 0.88 1.9E-05 46.2 8.5 41 296-336 55-96 (332)
492 PRK07261 topology modulation p 91.3 0.22 4.7E-06 45.6 3.7 24 299-322 2-25 (171)
493 smart00534 MUTSac ATPase domai 91.3 0.36 7.8E-06 44.8 5.2 21 300-320 2-22 (185)
494 TIGR00554 panK_bact pantothena 91.3 1.1 2.5E-05 44.5 9.0 30 293-322 58-87 (290)
495 PRK13900 type IV secretion sys 91.2 1 2.3E-05 45.9 8.9 93 299-397 162-259 (332)
496 PRK09270 nucleoside triphospha 91.1 0.67 1.4E-05 44.7 7.1 31 294-324 30-60 (229)
497 PRK03846 adenylylsulfate kinas 91.0 0.35 7.7E-06 45.4 5.0 38 296-334 23-60 (198)
498 cd01129 PulE-GspE PulE/GspE Th 91.0 0.76 1.7E-05 45.3 7.5 92 299-397 82-174 (264)
499 PRK14723 flhF flagellar biosyn 90.9 4.7 0.0001 45.5 14.2 121 297-429 185-314 (767)
500 PRK05439 pantothenate kinase; 90.9 0.82 1.8E-05 45.9 7.7 45 293-337 82-127 (311)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-57 Score=484.03 Aligned_cols=319 Identities=42% Similarity=0.696 Sum_probs=286.2
Q ss_pred HHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhH
Q psy1308 234 IKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTE 312 (607)
Q Consensus 234 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~ 312 (607)
..+++..+...+.... .+.+......|+..+.+.++||+.|++.++.++++...|+.++++|+ +|+|.||+|||||+
T Consensus 459 Ia~vv~~~TgIPv~~l--~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTE 536 (786)
T COG0542 459 IAEVVARWTGIPVAKL--LEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTE 536 (786)
T ss_pred HHHHHHHHHCCChhhh--chhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHH
Confidence 4445555554444422 23466678889999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHH
Q psy1308 313 LAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQ 392 (607)
Q Consensus 313 la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~ 392 (607)
+|++||+.++.+ +..++++|||+|.+.|++++|+|+||||+||++||.+++.+++.|++||+||||||+||+|++.|||
T Consensus 537 LAkaLA~~Lfg~-e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQ 615 (786)
T COG0542 537 LAKALAEALFGD-EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQ 615 (786)
T ss_pred HHHHHHHHhcCC-CccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHH
Confidence 999999999987 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHH
Q psy1308 393 LFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILK 472 (607)
Q Consensus 393 ~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 472 (607)
+||+|+++|..|+++||+|++||||||+|++.+.+.... .........++.+.+.++
T Consensus 616 VlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~-----------------------~~~~~~~~~~~~v~~~l~ 672 (786)
T COG0542 616 VLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADG-----------------------DDFADKEALKEAVMEELK 672 (786)
T ss_pred HhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccc-----------------------cccchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999988764211 000011123455678899
Q ss_pred hccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHH
Q psy1308 473 RHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 473 ~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~ 551 (607)
++|+ |||++|+|++|+|.||+++++.+|+..++.++..++. .+++.+++++++.++|++ +|++.+|||+|++.|++.
T Consensus 673 ~~F~-PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~-~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 673 KHFR-PEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLA-ERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred hhCC-HHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHH-hCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 9998 9999999999999999999999999999999999998 459999999999999986 999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEEecCCc
Q psy1308 552 VVSQLAAAHEKSVIGKGSFVRLYVQWSKE 580 (607)
Q Consensus 552 i~~~l~~~~l~~~~~~~~~v~i~~~~~~~ 580 (607)
|.++|++.++.+.+..|.++.|++.++..
T Consensus 751 i~~~La~~iL~g~~~~~~~v~v~~~~~~~ 779 (786)
T COG0542 751 IEDPLADEILFGKIEDGGTVKVDVDDEKI 779 (786)
T ss_pred HHHHHHHHHHhcccCCCcEEEEEecCceE
Confidence 99999999999999999999999998554
No 2
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=388.95 Aligned_cols=295 Identities=33% Similarity=0.562 Sum_probs=264.6
Q ss_pred HhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEe
Q psy1308 254 AEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRL 332 (607)
Q Consensus 254 ~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l 332 (607)
.+......|+..+.+.++||+.+++.+..++.....++.++++|. +++|+||+|+|||++|+.+|+.+. .+++++
T Consensus 444 ~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~----~~~i~i 519 (758)
T PRK11034 444 SDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRF 519 (758)
T ss_pred hHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC----CCcEEe
Confidence 345566788899999999999999999999999999999899998 899999999999999999999984 469999
Q ss_pred ecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 333 DMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 333 ~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
||+.|.+.+.+.+++|.++||+|++.++.+++.++..|++|||||||||+||++++.|++++++|.++|..|++++|+|+
T Consensus 520 d~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 520 DMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred echhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP 492 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p 492 (607)
+||+|||.|.+.+.+..+++.. . . . .....+.++.+|+ |||++|||.+++|.|
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~-------------~--~------~-----~~~~~~~~~~~f~-pefl~Rid~ii~f~~ 652 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIH-------------Q--D------N-----STDAMEEIKKIFT-PEFRNRLDNIIWFDH 652 (758)
T ss_pred EEEEeCCcCHHHHhhcccCccc-------------c--h------h-----hHHHHHHHHHhcC-HHHHccCCEEEEcCC
Confidence 9999999998876543221110 0 0 0 1112356678898 999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEE
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFV 571 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v 571 (607)
|+.+++.+|+..++.++.+++.. +++.++++++++++|++ +|++.+|||+|++.|++.+.+++++.++.+.+.+|+++
T Consensus 653 L~~~~l~~I~~~~l~~~~~~l~~-~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~ 731 (758)
T PRK11034 653 LSTDVIHQVVDKFIVELQAQLDQ-KGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQV 731 (758)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-CCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEE
Confidence 99999999999999999998855 59999999999999986 99999999999999999999999999999999999999
Q ss_pred EEEEecCCc
Q psy1308 572 RLYVQWSKE 580 (607)
Q Consensus 572 ~i~~~~~~~ 580 (607)
+|++.+++.
T Consensus 732 ~v~~~~~~~ 740 (758)
T PRK11034 732 TVALDKEKN 740 (758)
T ss_pred EEEEECCce
Confidence 999987664
No 3
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=4.2e-43 Score=395.61 Aligned_cols=307 Identities=40% Similarity=0.663 Sum_probs=272.3
Q ss_pred hhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 255 EERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 255 ~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
+......|++.|.+.++||+.+++.+..++.+...++.++++|. +++|+||+|+|||++|+.+|+.++.. ..+++++|
T Consensus 496 ~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-~~~~~~~d 574 (821)
T CHL00095 496 ESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-EDAMIRLD 574 (821)
T ss_pred HHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-ccceEEEE
Confidence 44556788999999999999999999999999999999999998 78999999999999999999999876 67899999
Q ss_pred cccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 334 MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 334 ~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
|+.|.+.+.+.+++|+++||+|+++++.+++.++..|++||+||||||+||++++.|++++++|.++|..|++++|+|++
T Consensus 575 ~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred chhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcchHHHHHHH--hhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeec
Q psy1308 414 FVMTSNLASNEIAQHA--LQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~ 491 (607)
||||||.|...+.... +++... .... .........+.+.+.++++|+ |||++|+|.+++|.
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~f~-peflnRid~ii~F~ 717 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELS-------------ENQL---SEKQYKRLSNLVNEELKQFFR-PEFLNRLDEIIVFR 717 (821)
T ss_pred EEEeCCcchHHHHhhccccCCccc-------------cccc---ccccHHHHHHHHHHHHHHhcC-HHHhccCCeEEEeC
Confidence 9999999998775321 111100 0000 000112234455677889998 99999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCE
Q psy1308 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSF 570 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~ 570 (607)
||+.+++.+|+...+.++.+++..+ ++.+.++++++++|++ +|++.+|||+|++.|++.+.++|++.++.+.+.+|++
T Consensus 718 pL~~~~l~~Iv~~~l~~l~~rl~~~-~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~ 796 (821)
T CHL00095 718 QLTKNDVWEIAEIMLKNLFKRLNEQ-GIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDI 796 (821)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC-CcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCCCCE
Confidence 9999999999999999999998654 9999999999999987 8999999999999999999999999999999999999
Q ss_pred EEEEEecCCc
Q psy1308 571 VRLYVQWSKE 580 (607)
Q Consensus 571 v~i~~~~~~~ 580 (607)
++|++.+++.
T Consensus 797 v~~~~~~~~~ 806 (821)
T CHL00095 797 IIVDVNDEKE 806 (821)
T ss_pred EEEEEeCCCc
Confidence 9999977763
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.1e-42 Score=389.41 Aligned_cols=297 Identities=32% Similarity=0.581 Sum_probs=267.3
Q ss_pred hhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 255 EERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 255 ~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
+......|+..+.+.++||+.+++.+...+.+...++.++++|+ +++|+||+|+|||++|+.+++.++.. ...++++|
T Consensus 553 e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-~~~~~~~d 631 (852)
T TIGR03345 553 EIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-EQNLITIN 631 (852)
T ss_pred HHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-CcceEEEe
Confidence 44567788999999999999999999999999999999999999 79999999999999999999999875 67899999
Q ss_pred cccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 334 MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 334 ~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
|+.|.+.+.+.+|+|++|||+|++++|.+++.+++.|++||+||||||+||++++.|++++++|.++|..|++++|+|++
T Consensus 632 mse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~i 711 (852)
T TIGR03345 632 MSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTV 711 (852)
T ss_pred HHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl 493 (607)
||||||+|...+.+...+.. ..+ ........+...+.++|+ |||++|++ +++|.||
T Consensus 712 iI~TSNlg~~~~~~~~~~~~----------------~~~------~~~~~~~~~~~~~~~~f~-PEflnRi~-iI~F~pL 767 (852)
T TIGR03345 712 ILLTSNAGSDLIMALCADPE----------------TAP------DPEALLEALRPELLKVFK-PAFLGRMT-VIPYLPL 767 (852)
T ss_pred EEEeCCCchHHHHHhccCcc----------------cCc------chHHHHHHHHHHHHHhcc-HHHhccee-EEEeCCC
Confidence 99999999998866431100 000 011223456678889998 99999997 8999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEE
Q psy1308 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVR 572 (607)
Q Consensus 494 ~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~ 572 (607)
+.+++.+|+...+..+.+++.+++++.++++++++++|++ +|++.+|||+|++.|++.|.++|++.++.+........+
T Consensus 768 s~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~ 847 (852)
T TIGR03345 768 DDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEPIER 847 (852)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhcCCCeeE
Confidence 9999999999999999988877779999999999999987 999999999999999999999999999999998888888
Q ss_pred EEEe
Q psy1308 573 LYVQ 576 (607)
Q Consensus 573 i~~~ 576 (607)
|++.
T Consensus 848 ~~~~ 851 (852)
T TIGR03345 848 IHLD 851 (852)
T ss_pred EEEe
Confidence 8764
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.1e-41 Score=382.71 Aligned_cols=295 Identities=43% Similarity=0.735 Sum_probs=266.8
Q ss_pred hhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 255 EERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 255 ~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
+......|+..+.+.++||+.+++.+...+.+...++.++++|. +++|.||+|+|||++|+.+|+.++.. ..+++++|
T Consensus 552 e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-~~~~i~~d 630 (852)
T TIGR03346 552 EREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-EDAMVRID 630 (852)
T ss_pred HHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-CCcEEEEe
Confidence 44566788889999999999999999999999999999999998 89999999999999999999999876 77899999
Q ss_pred cccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 334 MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 334 ~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
|+.|.+.+.+.+++|++|||+|+++++.+++.++..|++||+||||||+||++++.|++++++|.++|..|++++|+|++
T Consensus 631 ~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 631 MSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred chhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl 493 (607)
||||||.|.+.+.+...+ . . + .-....+...+.++|+ |||++|||.+++|.||
T Consensus 711 iI~TSn~g~~~~~~~~~~----------------~-----~----~-~~~~~~~~~~~~~~F~-pel~~Rid~IivF~PL 763 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGG----------------D-----D----Y-EEMREAVMEVLRAHFR-PEFLNRIDEIVVFHPL 763 (852)
T ss_pred EEEeCCcchHhHhhhccc----------------c-----c----H-HHHHHHHHHHHHhhcC-HHHhcCcCeEEecCCc
Confidence 999999999877542100 0 0 0 0112344566788998 9999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEE
Q psy1308 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVR 572 (607)
Q Consensus 494 ~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~ 572 (607)
+++++.+|+..++..+.+++..+ ++.+.++++++++|++ +|++++|+|+|++.|++.+.++|++.++.+.+.+|.++.
T Consensus 764 ~~e~l~~I~~l~L~~l~~~l~~~-~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~ 842 (852)
T TIGR03346 764 GREQIARIVEIQLGRLRKRLAER-KITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIV 842 (852)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC-CCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 99999999999999999888654 8899999999999987 899999999999999999999999999999999999999
Q ss_pred EEEecC
Q psy1308 573 LYVQWS 578 (607)
Q Consensus 573 i~~~~~ 578 (607)
|++.++
T Consensus 843 ~~~~~~ 848 (852)
T TIGR03346 843 VDVEGG 848 (852)
T ss_pred EEeeCC
Confidence 999654
No 6
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.5e-41 Score=379.03 Aligned_cols=289 Identities=36% Similarity=0.633 Sum_probs=261.4
Q ss_pred hhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 255 EERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 255 ~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
+......++..+.+.++||+.+++.+...+.+...++.++++|. +++|+||+|+|||++|+.+++.+. .+++++|
T Consensus 441 ~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~----~~~~~~d 516 (731)
T TIGR02639 441 DREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG----VHLERFD 516 (731)
T ss_pred HHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc----CCeEEEe
Confidence 44567788999999999999999999999999999999999998 899999999999999999999984 3599999
Q ss_pred cccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 334 MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 334 ~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
|++|.+.+.+.+++|+++||+|+++++.+++.++..|++||+||||||++|++++.|++++++|.++|..|++++|+|++
T Consensus 517 ~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~i 596 (731)
T TIGR02639 517 MSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVI 596 (731)
T ss_pred CchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl 493 (607)
||+|||.|.+.+.+...++.. ....+.....+++.|+ |||++|||.+++|.||
T Consensus 597 ii~Tsn~g~~~~~~~~~~f~~--------------------------~~~~~~~~~~~~~~f~-pef~~Rid~Vi~F~pL 649 (731)
T TIGR02639 597 LIMTSNAGASEMSKPPIGFGS--------------------------ENVESKSDKAIKKLFS-PEFRNRLDAIIHFNPL 649 (731)
T ss_pred EEECCCcchhhhhhccCCcch--------------------------hhhHHHHHHHHHhhcC-hHHHhcCCeEEEcCCC
Confidence 999999998876542221110 0012245567788898 9999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEE
Q psy1308 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVR 572 (607)
Q Consensus 494 ~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~ 572 (607)
+.+++.+|+..++.++.+++.. .++.+.++++++++|++ +|++.+|||+|+++|++.+.++|++.++.+.+..|+++.
T Consensus 650 s~e~l~~Iv~~~L~~l~~~l~~-~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~~~~~~ 728 (731)
T TIGR02639 650 SEEVLEKIVQKFVDELSKQLNE-KNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVK 728 (731)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-CCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCCCCEEE
Confidence 9999999999999999988865 49999999999999986 899999999999999999999999999999999999998
Q ss_pred EEE
Q psy1308 573 LYV 575 (607)
Q Consensus 573 i~~ 575 (607)
|++
T Consensus 729 ~~~ 731 (731)
T TIGR02639 729 VDL 731 (731)
T ss_pred EeC
Confidence 863
No 7
>KOG1051|consensus
Probab=100.00 E-value=2.5e-41 Score=365.83 Aligned_cols=321 Identities=42% Similarity=0.662 Sum_probs=269.5
Q ss_pred HHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHH
Q psy1308 237 ILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQ 316 (607)
Q Consensus 237 ~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~ 316 (607)
++..+...+.+.. ...+......|++.|...++||++++..++.++.+...|+.++..+.+++|.||+|+|||.+|++
T Consensus 533 ~~s~~tgip~~~~--~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAka 610 (898)
T KOG1051|consen 533 VVSRWTGIPVDRL--AEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKA 610 (898)
T ss_pred hhhhhcCCchhhh--hhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHH
Confidence 3344444443333 23345677889999999999999999999999999999999884444999999999999999999
Q ss_pred HHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhcc
Q psy1308 317 LAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDE 396 (607)
Q Consensus 317 la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~ 396 (607)
+|++++.. ++.|+++||++|.+ +++++|++|||+|++.++.+++.+++.|++|||||||||+|+++++.|++++|+
T Consensus 611 LA~~~Fgs-e~~~IriDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 611 LAEYVFGS-EENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred HHHHHcCC-ccceEEechhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 99999987 88999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHH----
Q psy1308 397 GRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILK---- 472 (607)
Q Consensus 397 ~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 472 (607)
|+++|..|++++|+|+|||||||.+...+..... .... ... .+.........+..+.+...
T Consensus 687 GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~-~~~~--------l~~------~~~~~~~~~~~k~~v~~~~~~~~~ 751 (898)
T KOG1051|consen 687 GRLTDSHGREVDFKNAIFIMTSNVGSSAIANDAS-LEEK--------LLD------MDEKRGSYRLKKVQVSDAVRIYNK 751 (898)
T ss_pred CccccCCCcEeeccceEEEEecccchHhhhcccc-cccc--------ccc------chhhhhhhhhhhhhhhhhhhcccc
Confidence 9999999999999999999999999887654321 0000 000 00000111111222334444
Q ss_pred hccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHH
Q psy1308 473 RHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 473 ~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~ 551 (607)
.+|+ |||++|+|.++.|.|++.+++.+|+...+.++.+++.++ ++.+.+++.+.+++.. +|++.+|||++++.|++.
T Consensus 752 ~~~r-~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~-~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~ 829 (898)
T KOG1051|consen 752 QFFR-KEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEER-ELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEER 829 (898)
T ss_pred cccC-hHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhh-HHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHH
Confidence 7787 999999999999999999999999999999999988765 5777889999999875 999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEEecCCcc
Q psy1308 552 VVSQLAAAHEKSVIGKGSFVRLYVQWSKEV 581 (607)
Q Consensus 552 i~~~l~~~~l~~~~~~~~~v~i~~~~~~~~ 581 (607)
+.+.++..++ ++++++.+++|.+..+...
T Consensus 830 ~~~~la~~~l-~ei~~~~~~~i~~~~~~~~ 858 (898)
T KOG1051|consen 830 FENRLAEALL-GEVEDGLTERILVADGWSQ 858 (898)
T ss_pred HHHHHhhhhe-eeecCCceEEEEecccccc
Confidence 9999999999 9999999999999886654
No 8
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=2.4e-40 Score=372.08 Aligned_cols=315 Identities=37% Similarity=0.677 Sum_probs=273.9
Q ss_pred HHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhH
Q psy1308 234 IKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTE 312 (607)
Q Consensus 234 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~ 312 (607)
..+++..+...+..... ..+......|++.+.+.++||+.+++.+...+.+...++.++++|. +++|+||+|+|||+
T Consensus 536 i~~vv~~~tgip~~~~~--~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~ 613 (857)
T PRK10865 536 IAEVLARWTGIPVSRML--ESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 613 (857)
T ss_pred HHHHHHHHHCCCchhhh--hhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHH
Confidence 34555555554444332 3345567788999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHH
Q psy1308 313 LAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQ 392 (607)
Q Consensus 313 la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~ 392 (607)
+|+.|++.++.. ..+++.++|+.|...+.+.+++|++|||+|++.++.+++.++..|++||+||||+++++++++.|++
T Consensus 614 lA~aLa~~l~~~-~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ 692 (857)
T PRK10865 614 LCKALANFMFDS-DDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQ 692 (857)
T ss_pred HHHHHHHHhhcC-CCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHH
Confidence 999999999865 6789999999999888899999999999999999999999999999999999999999999999999
Q ss_pred hhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHH
Q psy1308 393 LFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILK 472 (607)
Q Consensus 393 ~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 472 (607)
++++|.++|..|++++|+|++||+|||.|.+.+.+. ++.. .+.. ..+.+...+.
T Consensus 693 ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~-~~~~------------------------~~~~-~~~~~~~~~~ 746 (857)
T PRK10865 693 VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQER-FGEL------------------------DYAH-MKELVLGVVS 746 (857)
T ss_pred HHhhCceecCCceEEeecccEEEEeCCcchHHHHHh-cccc------------------------chHH-HHHHHHHHHc
Confidence 999999999999999999999999999998877542 1000 0001 1234456678
Q ss_pred hccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHH
Q psy1308 473 RHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 473 ~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~ 551 (607)
++|+ |+|++|+|.+++|.||+.+++..|+..++..+.+++.+ .++.+.++++++++|+. +|++.+|||+|++.|++.
T Consensus 747 ~~f~-PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~-~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 747 HNFR-PEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE-RGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred cccc-HHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh-CCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 8897 99999999999999999999999999999998888754 48889999999999986 999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEEecCC
Q psy1308 552 VVSQLAAAHEKSVIGKGSFVRLYVQWSK 579 (607)
Q Consensus 552 i~~~l~~~~l~~~~~~~~~v~i~~~~~~ 579 (607)
+.++|++.++.+.+.+|+++.|++.+++
T Consensus 825 i~~~la~~iL~g~~~~~~~~~~~~~~~~ 852 (857)
T PRK10865 825 IENPLAQQILSGELVPGKVIRLEVNDDR 852 (857)
T ss_pred HHHHHHHHHHcCcCCCCCEEEEEEECCE
Confidence 9999999999999999999999997554
No 9
>KOG4412|consensus
Probab=100.00 E-value=3.1e-36 Score=259.16 Aligned_cols=179 Identities=26% Similarity=0.335 Sum_probs=161.6
Q ss_pred CCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHH
Q psy1308 26 KRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTF 105 (607)
Q Consensus 26 ~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L 105 (607)
.+-.|+|||||||..|+.+++.+|++.+.... +++|..||||||.||..|+.++|+.|
T Consensus 34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~----------------------ddkDdaGWtPlhia~s~g~~evVk~L 91 (226)
T KOG4412|consen 34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP----------------------DDKDDAGWTPLHIAASNGNDEVVKEL 91 (226)
T ss_pred ccccCCceeeeeeecCchhHHHHHHhcCCCCC----------------------CCccccCCchhhhhhhcCcHHHHHHH
Confidence 34479999999999999999999987543332 57899999999999999999999999
Q ss_pred HhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCC
Q psy1308 106 IENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNP 183 (607)
Q Consensus 106 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 183 (607)
+.+.++|+|..+..|+||||+|+..|..+|+.+|+++|+.++.+|. .||||.||..|.++++++|+..|+.+|.+
T Consensus 92 l~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~q--- 168 (226)
T KOG4412|consen 92 LNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQ--- 168 (226)
T ss_pred hcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcc---
Confidence 9995599999999999999999999999999999999999999987 56999999999999999999999998877
Q ss_pred CcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhh
Q psy1308 184 NMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDA 232 (607)
Q Consensus 184 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~ 232 (607)
|.+|+||||.|...|+.++..+|+++|||+...|+.| ||+..|+..
T Consensus 169 --Dk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~ 214 (226)
T KOG4412|consen 169 --DKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNE 214 (226)
T ss_pred --cccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHH
Confidence 5569999999988899999999999999999999988 998877654
No 10
>PHA02791 ankyrin-like protein; Provisional
Probab=100.00 E-value=4.6e-34 Score=281.24 Aligned_cols=207 Identities=15% Similarity=0.133 Sum_probs=180.7
Q ss_pred hhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHH
Q psy1308 10 QLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLT 89 (607)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~ 89 (607)
+++..+++. ..+.++..|+||||+|+.+|+.+++++|+..+.... . .+|+||
T Consensus 13 ~~~~~Lis~---~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-----------------------~--~d~~Tp 64 (284)
T PHA02791 13 QLKSFLSSK---DAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKN-----------------------L--LENEFP 64 (284)
T ss_pred HHHHHHHhC---CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-----------------------C--CCCCCH
Confidence 455555553 224578889999999999999999999998765332 1 136899
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--C-chHHHHHHcCCccH
Q psy1308 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--F-NTVHRTAAEKKMNP 166 (607)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~-~~l~~A~~~~~~~~ 166 (607)
||+|+..|+.++|++|++.| ++++.+|..|+||||+||..|+.+++++|+++|++++.++. + ||||+|+..|+.++
T Consensus 65 Lh~Aa~~g~~eiV~lLL~~G-advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~ei 143 (284)
T PHA02791 65 LHQAATLEDTKIVKILLFSG-MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI 143 (284)
T ss_pred HHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHH
Confidence 99999999999999999998 99999999999999999999999999999999999988654 3 69999999999999
Q ss_pred HHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCC-CcchhhhhHHHHHHHHHHhh
Q psy1308 167 FEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP-SDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 167 ~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp-l~~A~~~~~~~~~~~ll~~~ 245 (607)
+++|++++++.. +. ..|.||||+|+..|+.+++++|+++||+++.+|..|.|| ||+|+..|+.+++++|++.|
T Consensus 144 vk~LL~~~~~~~--d~----~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G 217 (284)
T PHA02791 144 VSYFLSEIPSTF--DL----AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD 217 (284)
T ss_pred HHHHHhcCCccc--cc----ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Confidence 999999876432 11 138999999999999999999999999999999999987 99999999999999999999
Q ss_pred hhHHhh
Q psy1308 246 ADLQRE 251 (607)
Q Consensus 246 ~~~~~~ 251 (607)
++....
T Consensus 218 a~in~~ 223 (284)
T PHA02791 218 INIYSV 223 (284)
T ss_pred CCCccC
Confidence 998643
No 11
>KOG4412|consensus
Probab=100.00 E-value=4e-34 Score=246.15 Aligned_cols=202 Identities=22% Similarity=0.250 Sum_probs=173.2
Q ss_pred CchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccC-CCCCHHHHHHHHcCCHHHHHHHHhc
Q psy1308 30 QSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQ-SIKDLTLFRAARYGSAKELKTFIEN 108 (607)
Q Consensus 30 g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 108 (607)
+.++.+.+|......-++.+++... ..++.++ .+|+||||+||..|+.++|.+|++.
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~----------------------kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq 60 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDP----------------------KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ 60 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcCh----------------------hhhhccccccCCceeeeeeecCchhHHHHHHhc
Confidence 4567777776666655665543311 2233444 4999999999999999999999987
Q ss_pred CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCc
Q psy1308 109 SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNM 185 (607)
Q Consensus 109 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 185 (607)
.+..+|.+|..||||||.||..|+.++|+.|+.+ |+|+|..++ .||||||+..|..+++++|+++|+.++.+
T Consensus 61 ~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~k----- 135 (226)
T KOG4412|consen 61 PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIK----- 135 (226)
T ss_pred CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCccc-----
Confidence 6688999999999999999999999999999998 999999665 67999999999999999999999999887
Q ss_pred CcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccH
Q psy1308 186 TFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPL 262 (607)
Q Consensus 186 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L 262 (607)
|..|.||||.|+.-|..+++++|+..|+.+|.+|..|+||||.|.-.|+.++...|++.|++.... |+.+ +++
T Consensus 136 D~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~e---dke~-t~~ 208 (226)
T KOG4412|consen 136 DKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRE---DKEG-TAL 208 (226)
T ss_pred ccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeec---cccC-chH
Confidence 445999999999999999999999999999999999999999998888999999999999987643 3344 554
No 12
>PHA02874 ankyrin repeat protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=285.42 Aligned_cols=247 Identities=20% Similarity=0.225 Sum_probs=209.3
Q ss_pred hhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCc------------
Q psy1308 9 RQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLA------------ 76 (607)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~------------ 76 (607)
-+.+..++.......+..+..|.||||+|++.|+.+++++|+..+......+..+.++++.|...+..
T Consensus 14 ~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~ 93 (434)
T PHA02874 14 IEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD 93 (434)
T ss_pred HHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 34556666555555556677899999999999999999999999988877778888898888544322
Q ss_pred ---------------------cchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHH
Q psy1308 77 ---------------------LTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDN 135 (607)
Q Consensus 77 ---------------------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~ 135 (607)
..++..+..|.||||+|+..|+.++|++|+++| +++|.+|..|.||||+|+..|+.++
T Consensus 94 ~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~i 172 (434)
T PHA02874 94 TSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG-ADVNIEDDNGCYPIHIAIKHNFFDI 172 (434)
T ss_pred CCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHCCcHHH
Confidence 223456788999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCC
Q psy1308 136 VRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGA 213 (607)
Q Consensus 136 v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 213 (607)
+++|+++|++++..+. +||||+|+..|+.+++++|+++|++++..+. .|+||||+|+..+. +++.+|+ .|+
T Consensus 173 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~-----~g~TpL~~A~~~~~-~~i~~Ll-~~~ 245 (434)
T PHA02874 173 IKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK-----NGFTPLHNAIIHNR-SAIELLI-NNA 245 (434)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCC-----CCCCHHHHHHHCCh-HHHHHHH-cCC
Confidence 9999999999988664 6799999999999999999999999876644 49999999999865 5666666 689
Q ss_pred CCCccCCCCCCCCcchhhhh-HHHHHHHHHHhhhhHHhhHHHhhcccccHHHHH
Q psy1308 214 DPTVKDNSGHIPSDYAEDAN-IKQILQKYAEKYADLQREKEAEERRKYPLEQRL 266 (607)
Q Consensus 214 d~~~~d~~g~Tpl~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l 266 (607)
+++.+|..|+||||+|+..+ +.+++++|+..|++... .+..+.+||..+.
T Consensus 246 ~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~---~d~~g~TpL~~A~ 296 (434)
T PHA02874 246 SINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI---KDNKGENPIDTAF 296 (434)
T ss_pred CCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCC---CCCCCCCHHHHHH
Confidence 99999999999999999875 78999999999998763 4677889985554
No 13
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.98 E-value=2.5e-31 Score=281.81 Aligned_cols=227 Identities=19% Similarity=0.213 Sum_probs=185.6
Q ss_pred hhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCC
Q psy1308 8 RRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKD 87 (607)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~ 87 (607)
.-+++..+++. ...++..+..|.||||+|+..|+.+++++|+..+.... ..+..+.
T Consensus 14 ~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-----------------------~~~~~~~ 69 (413)
T PHA02875 14 ELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-----------------------VKYPDIE 69 (413)
T ss_pred CHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-----------------------ccCCCcc
Confidence 33444455443 22334445567777777777777777777776654322 3456789
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCcc
Q psy1308 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMN 165 (607)
Q Consensus 88 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~ 165 (607)
||||.|+..|+.++|++|++.+....+..+..|.||||+|+..|+.+++++|+++|++++..+. .||||+|+..|+.+
T Consensus 70 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 70 SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999998333456677899999999999999999999999999998664 67999999999999
Q ss_pred HHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCC-CCCcchhhhhHHHHHHHHHHh
Q psy1308 166 PFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGH-IPSDYAEDANIKQILQKYAEK 244 (607)
Q Consensus 166 ~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~-Tpl~~A~~~~~~~~~~~ll~~ 244 (607)
++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..++.+++++|+++
T Consensus 150 ~v~~Ll~~g~~~~~~d~-----~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 150 GIELLIDHKACLDIEDC-----CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred HHHHHHhcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999887644 499999999999999999999999999999998875 789999999999999999999
Q ss_pred hhhHHhhHHHhhcccccHH
Q psy1308 245 YADLQREKEAEERRKYPLE 263 (607)
Q Consensus 245 ~~~~~~~~~~~~~~~~~L~ 263 (607)
|++.......+..+.+++.
T Consensus 225 gad~n~~~~~~~~~~t~l~ 243 (413)
T PHA02875 225 GADCNIMFMIEGEECTILD 243 (413)
T ss_pred CcCcchHhhcCCCchHHHH
Confidence 9998765555555666663
No 14
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.98 E-value=5e-31 Score=269.38 Aligned_cols=274 Identities=21% Similarity=0.314 Sum_probs=203.6
Q ss_pred cccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCC----CC------CCceeeeeccCCCChhHHHHHHHHHhccCcCCc
Q psy1308 259 KYPLEQRLKDRIVGQESAINIISAAIKRKENGWTD----DD------HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEA 328 (607)
Q Consensus 259 ~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~----~~------~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~ 328 (607)
+..+...+.+.++||+.+++.+..++.++..+... +. .+.+++|.||+|+|||.+|+.+|+.+. .+
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~----~p 143 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN----VP 143 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC----CC
Confidence 44567788889999999999999888654443321 11 123899999999999999999998774 45
Q ss_pred eEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhh-------CCCeEEEEecCCccCH--------------HHH
Q psy1308 329 FIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK-------CPNAVVLFDEVDKAHP--------------DVL 387 (607)
Q Consensus 329 ~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~-------~~~~vl~lDEiek~~~--------------~~~ 387 (607)
|..++++.+. ++||+|.+.++.+...++. +.++||||||||++++ .+|
T Consensus 144 f~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq 212 (413)
T TIGR00382 144 FAIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQ 212 (413)
T ss_pred eEEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHH
Confidence 8777776542 3578887666666665543 4568999999999998 699
Q ss_pred HHHHHhhccceeec---CCCcEEecCceEEEEecCc---------chHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 388 TVLLQLFDEGRLTD---GKGKTIECKDAIFVMTSNL---------ASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 388 ~~Ll~~~~~~~~~~---~~g~~~~~~~~~iI~tsn~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
+.||++++ |.+++ .+|+.+++.++++|+|||+ |.+.+.+....... +....+....
T Consensus 213 ~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~---------~gf~~~~~~~-- 280 (413)
T TIGR00382 213 QALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSS---------IGFGAEVKKK-- 280 (413)
T ss_pred HHHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcc---------cccccccccc--
Confidence 99999995 88876 6789999999999999999 55555443211100 0000000000
Q ss_pred hhcchhhhhhhhhHHHHhc-cCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhh---cCCcEEEeCHhHHHHH
Q psy1308 456 VTISRHFKDHVVQPILKRH-FRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALD---KHNINIVWDIDVETIL 531 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~-f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~---~~~i~l~~~~~a~~~L 531 (607)
.............+++.++ |+ |||++|+|.+++|.||+.+++.+|+...++.+.+++.. ..++.++++++|+++|
T Consensus 281 ~~~~~~~~~~~~~~dl~~~g~~-PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~I 359 (413)
T TIGR00382 281 SKEKADLLRQVEPEDLVKFGLI-PEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAI 359 (413)
T ss_pred chhhHHHHHHHHHHHHHHHhhH-HHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHH
Confidence 0001122334444566565 87 99999999999999999999999999987766655443 3499999999999999
Q ss_pred Hc-cCCCCCCccchhHHHHHHHHHHHHHHH
Q psy1308 532 AD-GYDVHYGARSIKHEVERQVVSQLAAAH 560 (607)
Q Consensus 532 ~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~ 560 (607)
++ +|++.+|||+|++.|++.+.+.+.+.-
T Consensus 360 a~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 360 AKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred HHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 97 899999999999999999999987763
No 15
>PHA02791 ankyrin-like protein; Provisional
Probab=99.98 E-value=3.8e-31 Score=260.61 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=172.5
Q ss_pred chhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCC
Q psy1308 7 QRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIK 86 (607)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g 86 (607)
...+++..++..- ...+.. .|.||||+|+..|+.+++++|+..+.... ..|..|
T Consensus 41 g~~eiv~~Ll~~g-a~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn-----------------------~~d~~G 94 (284)
T PHA02791 41 NNVRLVCTLLNAG-ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGMDDS-----------------------QFDDKG 94 (284)
T ss_pred CCHHHHHHHHHCc-CCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCC-----------------------CCCCCC
Confidence 3444555555442 222333 36899999999999999999987765433 567899
Q ss_pred CHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCchHHHHHHcCCc
Q psy1308 87 DLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGW-TPLHVAAINGKVDNVRVLLEAGANP-NLGDLFNTVHRTAAEKKM 164 (607)
Q Consensus 87 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~~~l~~A~~~~~~ 164 (607)
+||||+||..|+.+++++|++++ ++++.++..|+ ||||+|+..|+.++|++|++++++. +...+.||||+|+..|+.
T Consensus 95 ~TpLh~Aa~~g~~eivk~Ll~~g-adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~ 173 (284)
T PHA02791 95 NTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHV 173 (284)
T ss_pred CCHHHHHHHcCCHHHHHHHHHCC-CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCH
Confidence 99999999999999999999999 99999999885 8999999999999999999997654 323468999999999999
Q ss_pred cHHHHHHhcCCCccccCCCCcCcCCcch-hhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHH
Q psy1308 165 NPFEVLLKREDEFNDVLNPNMTFLGFSA-LHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAE 243 (607)
Q Consensus 165 ~~~~~Ll~~g~~~~~~~~~~~d~~g~Tp-Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~ 243 (607)
+++++|+++|++++..+. .|.|| ||+|+..|+.++|++|+++|+|++.+|..| ||| ++.|++++|++
T Consensus 174 eiv~lLL~~gAd~n~~d~-----~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~ 241 (284)
T PHA02791 174 DMMILLLDYMTSTNTNNS-----LLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIE 241 (284)
T ss_pred HHHHHHHHCCCCCCcccC-----CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHH
Confidence 999999999999987644 48877 999999999999999999999999999955 777 78899999999
Q ss_pred hhhhHH
Q psy1308 244 KYADLQ 249 (607)
Q Consensus 244 ~~~~~~ 249 (607)
+.++..
T Consensus 242 ~~~~~~ 247 (284)
T PHA02791 242 KHVEYK 247 (284)
T ss_pred hhhhhc
Confidence 887654
No 16
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.98 E-value=2.8e-31 Score=287.30 Aligned_cols=238 Identities=17% Similarity=0.183 Sum_probs=208.5
Q ss_pred CCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHH-----HH----------HccCccchhccCCCC
Q psy1308 22 QKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLF-----AS----------ACSLALTLLECQSIK 86 (607)
Q Consensus 22 ~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~-----a~----------~~~~~~~~~~~~~~g 86 (607)
.....+..+.||||+|+..|+.+++++|+..+.........+.++++. |. +...+..++..+..|
T Consensus 27 ~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g 106 (480)
T PHA03100 27 LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG 106 (480)
T ss_pred cchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCC
Confidence 334456678999999999999999999999998888777788889988 64 334555667788899
Q ss_pred CHHHHHHH--HcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCC--CchHHHHHH
Q psy1308 87 DLTLFRAA--RYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAING--KVDNVRVLLEAGANPNLGDL--FNTVHRTAA 160 (607)
Q Consensus 87 ~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~ 160 (607)
.||||+|+ ..|+.+++++|++.| ++++.++..|.||||+|+..| +.+++++|+++|++++..+. +||||+|+.
T Consensus 107 ~tpL~~A~~~~~~~~~iv~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 107 ITPLLYAISKKSNSYSIVEYLLDNG-ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred CchhhHHHhcccChHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 99999999 999999999999998 999999999999999999999 99999999999999988664 679999999
Q ss_pred cCCccHHHHHHhcCCCccccCCCCcCcCC------cchhhHHHhcCC--HHHHHHHHhcCCCCCccCCCCCCCCcchhhh
Q psy1308 161 EKKMNPFEVLLKREDEFNDVLNPNMTFLG------FSALHYGVVAGN--TEVVELLLKSGADPTVKDNSGHIPSDYAEDA 232 (607)
Q Consensus 161 ~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g------~TpLh~A~~~g~--~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~ 232 (607)
.|+.+++++|+++|++++..+.. | .||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..
T Consensus 186 ~~~~~iv~~Ll~~ga~~~~~~~~-----~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~ 260 (480)
T PHA03100 186 KGNIDVIKFLLDNGADINAGDIE-----TLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN 260 (480)
T ss_pred hCCHHHHHHHHHcCCCccCCCCC-----CCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 99999999999999998876443 6 899999999999 9999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHh
Q psy1308 233 NIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKD 268 (607)
Q Consensus 233 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~ 268 (607)
++.+++++|++.|++.. ..+..|.+|+..+...
T Consensus 261 ~~~~iv~~Ll~~gad~n---~~d~~g~tpl~~A~~~ 293 (480)
T PHA03100 261 NNPEFVKYLLDLGANPN---LVNKYGDTPLHIAILN 293 (480)
T ss_pred CCHHHHHHHHHcCCCCC---ccCCCCCcHHHHHHHh
Confidence 99999999999999765 4467788888777653
No 17
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.98 E-value=1.6e-31 Score=289.28 Aligned_cols=238 Identities=24% Similarity=0.315 Sum_probs=213.4
Q ss_pred hchhhhHHHHHhhcccCCCCCCcCCchHHHH-----HHhcCChhHHHHHhcCCCcccccccccCChHHHHH--Hc-----
Q psy1308 6 VQRRQLVLCILSNYFKQKPYKRGFQSSKLFY-----TTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFAS--AC----- 73 (607)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-----A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~--~~----- 73 (607)
....+++..++... ...+..+..|.||||+ |+..++.+++++|+..+......+..+.++++.|. ..
T Consensus 45 ~~~~~ivk~Ll~~g-~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~i 123 (480)
T PHA03100 45 ARNIDVVKILLDNG-ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSI 123 (480)
T ss_pred cCCHHHHHHHHHcC-CCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHH
Confidence 34456666776553 4456667789999999 99999999999999999988888888999999988 33
Q ss_pred -----cCccchhccCCCCCHHHHHHHHcC--CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy1308 74 -----SLALTLLECQSIKDLTLFRAARYG--SAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146 (607)
Q Consensus 74 -----~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 146 (607)
..+..++..+..|.||||+|+..| +.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g-~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~ 202 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG-VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI 202 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC-CCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc
Confidence 344455678899999999999999 999999999999 999999999999999999999999999999999999
Q ss_pred CCCCC--------CchHHHHHHcCC--ccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCC
Q psy1308 147 NLGDL--------FNTVHRTAAEKK--MNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPT 216 (607)
Q Consensus 147 ~~~d~--------~~~l~~A~~~~~--~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 216 (607)
+..+. .+|||+|+..++ .+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|+|++
T Consensus 203 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~-----~g~TpL~~A~~~~~~~iv~~Ll~~gad~n 277 (480)
T PHA03100 203 NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDV-----YGFTPLHYAVYNNNPEFVKYLLDLGANPN 277 (480)
T ss_pred cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 98654 579999999999 9999999999999988754 49999999999999999999999999999
Q ss_pred ccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHh
Q psy1308 217 VKDNSGHIPSDYAEDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 217 ~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~ 250 (607)
.+|..|.||+|+|+..++.++++.|++.|++...
T Consensus 278 ~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~ 311 (480)
T PHA03100 278 LVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 311 (480)
T ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence 9999999999999999999999999999987663
No 18
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-31 Score=265.73 Aligned_cols=228 Identities=19% Similarity=0.298 Sum_probs=201.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++.++..+.+.+.....+ ...+++.|++||||..+||+||+...+. ..||+.+||+...++...++|||
T Consensus 224 ~iIG~S~am~~ll~~i~~VA~S------d~tVLi~GETGtGKElvAraIH~~S~R~-~kPfV~~NCAAlPesLlESELFG 296 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVAKS------DSTVLIRGETGTGKELVARAIHQLSPRR-DKPFVKLNCAALPESLLESELFG 296 (550)
T ss_pred cceecCHHHHHHHHHHHHHhcC------CCeEEEecCCCccHHHHHHHHHhhCccc-CCCceeeeccccchHHHHHHHhc
Confidence 6999999999999999877654 4579999999999999999999999887 88999999999999999999999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+..| |+|... ...+.++.+++|++|||||..+|.++|.+||.++++|.|...+|...-.-++++|++||.+-+..+
T Consensus 297 HeKGAFTGA~~--~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V- 373 (550)
T COG3604 297 HEKGAFTGAIN--TRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMV- 373 (550)
T ss_pred ccccccccchh--ccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHH-
Confidence 9988 887533 345678889999999999999999999999999999999999988888889999999996655443
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC---CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF---SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl---~~~~~~~i~~~ 504 (607)
..+.|| .+||+|++.+.++.|. +++|+.-++..
T Consensus 374 -------------------------------------------~~G~FR-aDLYyRLsV~Pl~lPPLRER~~DIplLA~~ 409 (550)
T COG3604 374 -------------------------------------------RDGEFR-ADLYYRLSVFPLELPPLRERPEDIPLLAGY 409 (550)
T ss_pred -------------------------------------------HcCcch-hhhhhcccccccCCCCcccCCccHHHHHHH
Confidence 346687 9999999999888886 56899999999
Q ss_pred HHHHHHHHHhhcCCc-EEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNI-NIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i-~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
++++...++ |. .+.++++|++.|.+ |.||+|+|+|+++|+|.+...
T Consensus 410 Fle~~~~~~----gr~~l~ls~~Al~~L~~-y~wPGNVRELen~veRavlla 456 (550)
T COG3604 410 FLEKFRRRL----GRAILSLSAEALELLSS-YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHhc----CCcccccCHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHh
Confidence 998776654 55 89999999999997 999999999999999987755
No 19
>PHA03095 ankyrin-like protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=281.06 Aligned_cols=247 Identities=17% Similarity=0.169 Sum_probs=214.4
Q ss_pred hHHHHHhhcccCCCCCCcCCchHHHHHHhcC---ChhHHHHHhcCCCcccccccccCChHHHHHHcc-----------Cc
Q psy1308 11 LVLCILSNYFKQKPYKRGFQSSKLFYTTQST---QADFKSCLSVFPKIRQSNNTCMYNNLLFASACS-----------LA 76 (607)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~-----------~~ 76 (607)
.+..+++ .....+..+.+|+||||+|+..+ +.+++++|+..+...+..+..+.+++|.|...+ .+
T Consensus 29 ~v~~Ll~-~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g 107 (471)
T PHA03095 29 EVRRLLA-AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG 107 (471)
T ss_pred HHHHHHH-cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC
Confidence 4444443 34556778889999999999999 999999999999999998889999999987555 33
Q ss_pred cchhccCCCCCHHHHHHH--HcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCC-
Q psy1308 77 LTLLECQSIKDLTLFRAA--RYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAING--KVDNVRVLLEAGANPNLGDL- 151 (607)
Q Consensus 77 ~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~- 151 (607)
..++..+..|.||||+|+ ..++.+++++|++.| ++++.+|..|.||||+|+..+ +.+++++|+++|++++..|.
T Consensus 108 a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g-ad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~ 186 (471)
T PHA03095 108 ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG-ADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDR 186 (471)
T ss_pred CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCC
Confidence 455778899999999999 567899999999999 999999999999999998876 68999999999999988764
Q ss_pred -CchHHHHHHc--CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCH--HHHHHHHhcCCCCCccCCCCCCCC
Q psy1308 152 -FNTVHRTAAE--KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNT--EVVELLLKSGADPTVKDNSGHIPS 226 (607)
Q Consensus 152 -~~~l~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~--~~v~~Ll~~gad~~~~d~~g~Tpl 226 (607)
+||||+++.. ++.++++.|+++|++++..+. .|+||||+|+..|+. .+++.|++.|+++|.+|..|+|||
T Consensus 187 g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~-----~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpL 261 (471)
T PHA03095 187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM-----LGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL 261 (471)
T ss_pred CCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCC-----CCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 6799999876 677899999999999988754 499999999999975 688999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHH
Q psy1308 227 DYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLK 267 (607)
Q Consensus 227 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~ 267 (607)
|+|+..|+.+++++|+..|++.. ..+..|.+||..+..
T Consensus 262 h~A~~~~~~~~v~~LL~~gad~n---~~~~~g~tpl~~A~~ 299 (471)
T PHA03095 262 HYAAVFNNPRACRRLIALGADIN---AVSSDGNTPLSLMVR 299 (471)
T ss_pred HHHHHcCCHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHH
Confidence 99999999999999999999876 446788999966543
No 20
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-31 Score=267.91 Aligned_cols=228 Identities=22% Similarity=0.331 Sum_probs=203.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++|.+.++..+.+..++.... +.++++.|++||||..+|+.||+...+. +.||+++||++.+++...++||
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A~t------dstVLi~GESGTGKElfA~~IH~~S~R~-~~PFIaiNCaAiPe~LlESELF 317 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIAKT------DSTVLILGESGTGKELFARAIHNLSPRA-NGPFIAINCAAIPETLLESELF 317 (560)
T ss_pred hhhccCCHHHHHHHHHHHhhcCC------CCcEEEecCCCccHHHHHHHHHhcCccc-CCCeEEEecccCCHHHHHHHHh
Confidence 46899999999998888887654 4589999999999999999999999887 8999999999999999999999
Q ss_pred cCCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHH
Q psy1308 348 GAPPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426 (607)
Q Consensus 348 g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~ 426 (607)
|+.+| |+|...+|. .+.++.+++|+||||||..+|..+|..||++++++++...+|......+++||.+||....++.
T Consensus 318 Gye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i 396 (560)
T COG3829 318 GYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMI 396 (560)
T ss_pred CcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHH
Confidence 99999 999987765 6889999999999999999999999999999999999999999888899999999997666554
Q ss_pred HHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC---CHHHHHHHHH
Q psy1308 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF---SKSELHTLVC 503 (607)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl---~~~~~~~i~~ 503 (607)
+ ++.|| .+||||++.+.++.|. +++|+..++.
T Consensus 397 ~--------------------------------------------~G~FR-eDLYYRLNV~~i~iPPLReR~eDI~~L~~ 431 (560)
T COG3829 397 A--------------------------------------------EGTFR-EDLYYRLNVIPITIPPLRERKEDIPLLAE 431 (560)
T ss_pred h--------------------------------------------cCcch-hhheeeeceeeecCCCcccCcchHHHHHH
Confidence 3 35587 9999999999888776 6689999999
Q ss_pred HHHHHHHHHHhhcCCcEEE-eCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 504 RELNFWAKKALDKHNINIV-WDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 504 ~~l~~~~~~~~~~~~i~l~-~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
.+|..+.+++ +..+. ++++++..|.+ |+||+|+|+|+|.||+.+.
T Consensus 432 ~Fl~k~s~~~----~~~v~~ls~~a~~~L~~-y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 432 YFLDKFSRRY----GRNVKGLSPDALALLLR-YDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHHc----CCCcccCCHHHHHHHHh-CCCCchHHHHHHHHHHHHh
Confidence 9999877765 44454 99999999996 9999999999999999775
No 21
>KOG0510|consensus
Probab=99.97 E-value=6.1e-31 Score=273.40 Aligned_cols=233 Identities=24% Similarity=0.196 Sum_probs=203.5
Q ss_pred HHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCcc---------------ch
Q psy1308 15 ILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLAL---------------TL 79 (607)
Q Consensus 15 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~---------------~~ 79 (607)
++..|..+.+..+..|+||||+||..++.+..+.|++.+..+...+..++.++|.|...+... .+
T Consensus 139 ~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i 218 (929)
T KOG0510|consen 139 LLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI 218 (929)
T ss_pred HHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc
Confidence 445667788888999999999999999999889999999999999999999999986554332 34
Q ss_pred hccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCC--------------CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy1308 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLD--------------VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN 145 (607)
Q Consensus 80 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 145 (607)
+-.++.|.||||.|+..|++++++.+|+.+..+ +|..|.+|.||||+||..|+.+++..|+..|++
T Consensus 219 n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~ 298 (929)
T KOG0510|consen 219 NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS 298 (929)
T ss_pred ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc
Confidence 566789999999999999999999999987433 445688999999999999999999999999999
Q ss_pred CCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCC---ccCC
Q psy1308 146 PNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPT---VKDN 220 (607)
Q Consensus 146 ~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~---~~d~ 220 (607)
++.++. .+|||.||.+|++++++-||+ .. +...-+..|..|.||||.|+..||..++++|++.||+.. ..|.
T Consensus 299 I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~--~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~ 375 (929)
T KOG0510|consen 299 INSKNKDEESPLHFAAIYGRINTVERLLQ-ES--DTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADS 375 (929)
T ss_pred ccccCCCCCCchHHHHHcccHHHHHHHHh-Cc--CccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccccc
Confidence 999654 679999999999999999999 22 223334557889999999999999999999999999887 5699
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHhhhhHHh
Q psy1308 221 SGHIPSDYAEDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 221 ~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~ 250 (607)
+|.||||+|+..|+..+|++|+.+|+++..
T Consensus 376 dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~ 405 (929)
T KOG0510|consen 376 DGNTALHLAAKYGNTSAVQKLISHGADIGV 405 (929)
T ss_pred CCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence 999999999999999999999999999854
No 22
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=280.58 Aligned_cols=234 Identities=19% Similarity=0.155 Sum_probs=200.2
Q ss_pred CCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccch--------hccCCCCCHHHHHHH
Q psy1308 23 KPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTL--------LECQSIKDLTLFRAA 94 (607)
Q Consensus 23 ~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~--------~~~~~~g~t~Lh~A~ 94 (607)
.+..+..+.||||+||..|+.+++++|+..+......+..+.+++|.|+..+....+ ......+.+|+|.|+
T Consensus 30 ~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~ 109 (477)
T PHA02878 30 STSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAF 109 (477)
T ss_pred cCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHH
Confidence 344567899999999999999999999999998888899999999999876543221 111256788999999
Q ss_pred HcCCHH---------------------------------HHHHHHhcCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHH
Q psy1308 95 RYGSAK---------------------------------ELKTFIENSKLDVNMRHPL-GWTPLHVAAINGKVDNVRVLL 140 (607)
Q Consensus 95 ~~g~~~---------------------------------~v~~Ll~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll 140 (607)
..|+.+ ++++|+++| +++|.++.. |+||||+|+..|+.+++++|+
T Consensus 110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~g-adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll 188 (477)
T PHA02878 110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG-ADINMKDRHKGNTALHYATENKDQRLTELLL 188 (477)
T ss_pred HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcC-CCCCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence 888755 556666666 899999998 999999999999999999999
Q ss_pred HcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhc-CCHHHHHHHHhcCCCCCc
Q psy1308 141 EAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA-GNTEVVELLLKSGADPTV 217 (607)
Q Consensus 141 ~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gad~~~ 217 (607)
++|++++..|. +||||+|+..++.+++++|+++|++++..+. .|+||||+|+.. ++.+++++|+++|++++.
T Consensus 189 ~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~-----~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~ 263 (477)
T PHA02878 189 SYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK-----CGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263 (477)
T ss_pred HCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc
Confidence 99999998764 6799999999999999999999999987754 499999999976 799999999999999999
Q ss_pred cCC-CCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHH
Q psy1308 218 KDN-SGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLK 267 (607)
Q Consensus 218 ~d~-~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~ 267 (607)
++. .|.||||+| .++.+++++|++.|++.. ..+..|.+||..++.
T Consensus 264 ~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin---~~d~~g~TpL~~A~~ 309 (477)
T PHA02878 264 KSYILGLTALHSS--IKSERKLKLLLEYGADIN---SLNSYKLTPLSSAVK 309 (477)
T ss_pred cCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCC---CcCCCCCCHHHHHHH
Confidence 986 799999999 466789999999999876 446788999966554
No 23
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.97 E-value=7.6e-31 Score=285.24 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=185.4
Q ss_pred hHHHHHhhcccCCCCCCcCCchHHHHHHhcCCh--hHHHHHhcCCCcccccccccCChHHHHHH----------------
Q psy1308 11 LVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQA--DFKSCLSVFPKIRQSNNTCMYNNLLFASA---------------- 72 (607)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~L~~~~~~~~~~~~~~~~~l~~a~~---------------- 72 (607)
++..++++ ....+.++..|.||||+|+..|+. +++++|++.|+.+...+..+.++++.+..
T Consensus 194 IVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~ 272 (764)
T PHA02716 194 ILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIES 272 (764)
T ss_pred HHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHh
Confidence 44444433 345667788899999999999864 89999999999988888888898886421
Q ss_pred -------------------------------ccCccchhccCCCCCHHHHHHHH--cCCHHHHHHHHhcCCCCCccCCCC
Q psy1308 73 -------------------------------CSLALTLLECQSIKDLTLFRAAR--YGSAKELKTFIENSKLDVNMRHPL 119 (607)
Q Consensus 73 -------------------------------~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~ 119 (607)
+..+..++..|..|+||||+|+. .++.+++++|++.| +++|.+|..
T Consensus 273 ~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G-ADIN~kD~~ 351 (764)
T PHA02716 273 LDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG-NDLNEPDNI 351 (764)
T ss_pred ccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC-CCCccCCCC
Confidence 12233446678899999998764 46789999999998 999999999
Q ss_pred CCcHHHHHHH--------------cCCHHHHHHHHHcCCCCCCCCC--CchHHHH----HHcCCccHHHHHHhcCCCccc
Q psy1308 120 GWTPLHVAAI--------------NGKVDNVRVLLEAGANPNLGDL--FNTVHRT----AAEKKMNPFEVLLKREDEFND 179 (607)
Q Consensus 120 g~tpLh~A~~--------------~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A----~~~~~~~~~~~Ll~~g~~~~~ 179 (607)
|+||||+|+. .++.+++++|+++|++++.+|. +||||.+ ...++.+++++|++.|+....
T Consensus 352 G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~ 431 (764)
T PHA02716 352 GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMV 431 (764)
T ss_pred CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhh
Confidence 9999999875 3688999999999999998765 6699842 224678888988887642110
Q ss_pred --------------------------------------------------------cCCCCcCcCCcchhhHHHhcCCH-
Q psy1308 180 --------------------------------------------------------VLNPNMTFLGFSALHYGVVAGNT- 202 (607)
Q Consensus 180 --------------------------------------------------------~~~~~~d~~g~TpLh~A~~~g~~- 202 (607)
.+.+..|..|+||||+|+..|+.
T Consensus 432 ~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~ 511 (764)
T PHA02716 432 KHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNA 511 (764)
T ss_pred hhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCcc
Confidence 01123466799999999999876
Q ss_pred ----HHHHHHHhcCCCCCccCCCCCCCCcchhhhhHH-----HHHHHHHHhhhhHHh
Q psy1308 203 ----EVVELLLKSGADPTVKDNSGHIPSDYAEDANIK-----QILQKYAEKYADLQR 250 (607)
Q Consensus 203 ----~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~-----~~~~~ll~~~~~~~~ 250 (607)
+++++|++.|+|+|.+|.+|+||||+|+.+|+. ++++.|++++++...
T Consensus 512 ~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~ 568 (764)
T PHA02716 512 NIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDI 568 (764)
T ss_pred chhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcch
Confidence 445999999999999999999999999998855 999999999887653
No 24
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.97 E-value=5.1e-30 Score=288.11 Aligned_cols=242 Identities=19% Similarity=0.183 Sum_probs=177.5
Q ss_pred HhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCcc------------------
Q psy1308 16 LSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLAL------------------ 77 (607)
Q Consensus 16 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~------------------ 77 (607)
+.......+..+.+|.||||+||+.|+.+++++|+..+.........+.++++.|...+...
T Consensus 164 Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~ 243 (682)
T PHA02876 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLS 243 (682)
T ss_pred HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHH
Confidence 33445566778889999999999999999999999999888877778888888886544321
Q ss_pred ---------------------chhccCCCCCHHHHHHHHcCCH-HHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC-CHH
Q psy1308 78 ---------------------TLLECQSIKDLTLFRAARYGSA-KELKTFIENSKLDVNMRHPLGWTPLHVAAING-KVD 134 (607)
Q Consensus 78 ---------------------~~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~ 134 (607)
..+..+..|.||||+|+..|+. +++++|++.| ++++.+|..|.||||+|+..| +.+
T Consensus 244 L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g-adin~~d~~g~TpLh~Aa~~g~~~~ 322 (682)
T PHA02876 244 LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG-ADVNAKNIKGETPLYLMAKNGYDTE 322 (682)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCCCHH
Confidence 2334556677777777777775 4677777777 777777777777777777777 477
Q ss_pred HHHHHHHcCCCCCCCCC--CchHHHHHHc-CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhc
Q psy1308 135 NVRVLLEAGANPNLGDL--FNTVHRTAAE-KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS 211 (607)
Q Consensus 135 ~v~~Ll~~ga~~~~~d~--~~~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 211 (607)
++++|+..|++++..|. +||||+|+.. ++.+++++|++.|++++..+. .|+||||+|+..|+.+++++|+++
T Consensus 323 ~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~-----~G~TpLh~Aa~~~~~~iv~~Ll~~ 397 (682)
T PHA02876 323 NIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDY-----CDKTPIHYAAVRNNVVIINTLLDY 397 (682)
T ss_pred HHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCC-----CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 77777777777777654 4577777764 356677777777777776533 377777777777777777777777
Q ss_pred CCCCCccCCCCCCCCcchhhhh-HHHHHHHHHHhhhhHHhhHHHhhcccccHHHHH
Q psy1308 212 GADPTVKDNSGHIPSDYAEDAN-IKQILQKYAEKYADLQREKEAEERRKYPLEQRL 266 (607)
Q Consensus 212 gad~~~~d~~g~Tpl~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l 266 (607)
|++++..+..|.||||+|+..+ ...+++.|++.|++.. ..+..|.+||+.+.
T Consensus 398 gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin---~~d~~G~TpLh~Aa 450 (682)
T PHA02876 398 GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN---SKNKDLSTPLHYAC 450 (682)
T ss_pred CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC---cCCCCCChHHHHHH
Confidence 7777777777777777776543 3456777777777654 34566777775443
No 25
>PHA03095 ankyrin-like protein; Provisional
Probab=99.97 E-value=7.1e-30 Score=275.73 Aligned_cols=235 Identities=17% Similarity=0.105 Sum_probs=206.3
Q ss_pred hhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcC-ChhHHHHHhcCCCcccccccccCChHHHHHH------------cc
Q psy1308 8 RRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQST-QADFKSCLSVFPKIRQSNNTCMYNNLLFASA------------CS 74 (607)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~------------~~ 74 (607)
..+++..++ ......+..+..|.||||+|+..| +.+++++|+..+......+..+.+++|.|.. +.
T Consensus 62 ~~~iv~~Ll-~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~ 140 (471)
T PHA03095 62 VKDIVRLLL-EAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR 140 (471)
T ss_pred hHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH
Confidence 334444454 344556777889999999999999 5999999999999999889999999999862 22
Q ss_pred CccchhccCCCCCHHHHHHHHcC--CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCCCC
Q psy1308 75 LALTLLECQSIKDLTLFRAARYG--SAKELKTFIENSKLDVNMRHPLGWTPLHVAAIN--GKVDNVRVLLEAGANPNLGD 150 (607)
Q Consensus 75 ~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~ga~~~~~d 150 (607)
.+..++..+..|.||||+|+..+ +.+++++|+++| ++++..|..|+||||+|+.. ++.+++++|+++|++++.+|
T Consensus 141 ~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d 219 (471)
T PHA03095 141 KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG-ADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATD 219 (471)
T ss_pred cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccC
Confidence 34456778899999999999876 689999999999 99999999999999999975 78899999999999999977
Q ss_pred C--CchHHHHHHcCCc--cHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCC
Q psy1308 151 L--FNTVHRTAAEKKM--NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPS 226 (607)
Q Consensus 151 ~--~~~l~~A~~~~~~--~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl 226 (607)
. +||||+|+..++. .+++.|++.|++++..+. .|+||||+|+..|+.+++++|+++|||++.+|.+|+|||
T Consensus 220 ~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~-----~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl 294 (471)
T PHA03095 220 MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNR-----YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294 (471)
T ss_pred CCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 5 6799999999986 578899999999988754 499999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHhhhhHH
Q psy1308 227 DYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 227 ~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
|+|+..++.++++.|+..+++..
T Consensus 295 ~~A~~~~~~~~v~~LL~~~~~~~ 317 (471)
T PHA03095 295 SLMVRNNNGRAVRAALAKNPSAE 317 (471)
T ss_pred HHHHHhCCHHHHHHHHHhCCCHH
Confidence 99999999999999999987765
No 26
>PHA02946 ankyin-like protein; Provisional
Probab=99.97 E-value=7.4e-30 Score=269.81 Aligned_cols=226 Identities=12% Similarity=0.114 Sum_probs=125.6
Q ss_pred hHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHcc------------Cccc
Q psy1308 11 LVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACS------------LALT 78 (607)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~------------~~~~ 78 (607)
++..++++ ....+.++..|+||||+||..|+.+++++|+..+..+...+..+.+++|+|.... .+..
T Consensus 54 iv~~Ll~~-Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad 132 (446)
T PHA02946 54 FVEELLHR-GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK 132 (446)
T ss_pred HHHHHHHC-cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 44444443 3456677888889999999999999999888887766655555555555543221 1112
Q ss_pred hh-ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCC--Cc
Q psy1308 79 LL-ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAING--KVDNVRVLLEAGANPNLGDL--FN 153 (607)
Q Consensus 79 ~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~--~~ 153 (607)
++ ..+..|.|||| ||..|+.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|+++|++++.+|. +|
T Consensus 133 in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g-ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~T 210 (446)
T PHA02946 133 INNSVDEEGCGPLL-ACTDPSERVFKKIMSIG-FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNT 210 (446)
T ss_pred cccccCCCCCcHHH-HHHCCChHHHHHHHhcc-ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCC
Confidence 22 13455555554 44445555555555555 555555555566655555433 24555555555555555432 44
Q ss_pred hHHHHHHcC--CccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCC-HHHHHHHHhcCCCCC--------------
Q psy1308 154 TVHRTAAEK--KMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN-TEVVELLLKSGADPT-------------- 216 (607)
Q Consensus 154 ~l~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~gad~~-------------- 216 (607)
|||+|+..+ +.+++++|+. |++++..+. .|.||||+|+..++ .+++++|+++|++.+
T Consensus 211 pLH~Aa~~~~~~~~iv~lLl~-gadin~~d~-----~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~ 284 (446)
T PHA02946 211 PLHIVCSKTVKNVDIINLLLP-STDVNKQNK-----FGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDD 284 (446)
T ss_pred HHHHHHHcCCCcHHHHHHHHc-CCCCCCCCC-----CCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchH
Confidence 566555543 4455555553 555554422 25566665555555 355555555554321
Q ss_pred ------cc-CCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 217 ------VK-DNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 217 ------~~-d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
.. +..|+||||+|+.+|+.+++++|++++
T Consensus 285 ~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~ 320 (446)
T PHA02946 285 VLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND 320 (446)
T ss_pred HHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 11 123445555555555555555555544
No 27
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.97 E-value=8.4e-30 Score=275.38 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=182.8
Q ss_pred hhHHHHHhhcccCCCCCCcCCchHHHHHHhc--CChhHHHHHhcCCCcccccccccCChHHHHH----------------
Q psy1308 10 QLVLCILSNYFKQKPYKRGFQSSKLFYTTQS--TQADFKSCLSVFPKIRQSNNTCMYNNLLFAS---------------- 71 (607)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~---------------- 71 (607)
+.+..+++. ....+.. ..|.||||+++.. ++.+++++|++.|+.++..+ .+.++++.+.
T Consensus 17 ~~v~~LL~~-GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~ 93 (494)
T PHA02989 17 NALEFLLRT-GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKL 93 (494)
T ss_pred HHHHHHHHc-CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHH
Confidence 344445533 3334444 5689998765544 37899999999999887654 3477887653
Q ss_pred HccCccchhccCCCCCHHHHHHHHc---CCHHHHHHHHhcCCCCC-ccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCC
Q psy1308 72 ACSLALTLLECQSIKDLTLFRAARY---GSAKELKTFIENSKLDV-NMRHPLGWTPLHVAAIN--GKVDNVRVLLEAGAN 145 (607)
Q Consensus 72 ~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~-~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~ga~ 145 (607)
++..+..++..+..|.||||.|+.. |+.++|++|+++| +|+ +.+|..|+||||+|+.. ++.++|++|+++|++
T Consensus 94 Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G-adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad 172 (494)
T PHA02989 94 LLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG-INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN 172 (494)
T ss_pred HHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC-CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence 2345667788899999999998766 6899999999999 999 89999999999999764 689999999999999
Q ss_pred CCC-C--CCCchHHHHHHcC----CccHHHHHHhcCCCccccCC---------------------------------CCc
Q psy1308 146 PNL-G--DLFNTVHRTAAEK----KMNPFEVLLKREDEFNDVLN---------------------------------PNM 185 (607)
Q Consensus 146 ~~~-~--d~~~~l~~A~~~~----~~~~~~~Ll~~g~~~~~~~~---------------------------------~~~ 185 (607)
++. . .+.||||+|+..+ +.+++++|+++|++++..+. +..
T Consensus 173 i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~ 252 (494)
T PHA02989 173 LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKK 252 (494)
T ss_pred ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCC
Confidence 987 3 3578999998764 88999999999999887652 234
Q ss_pred CcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhh
Q psy1308 186 TFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247 (607)
Q Consensus 186 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~ 247 (607)
|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.++++.|++.++.
T Consensus 253 d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~ 314 (494)
T PHA02989 253 DKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG 314 (494)
T ss_pred CCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 56677888888877888888888888888888887888888888877777777777766543
No 28
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.97 E-value=8.6e-30 Score=277.04 Aligned_cols=196 Identities=14% Similarity=0.106 Sum_probs=116.9
Q ss_pred hhHHHHHhhcccCCCCC-CcCCchHHHHHHh--cCChhHHHHHhcCCCcccccccccCChHHHHHHcc------------
Q psy1308 10 QLVLCILSNYFKQKPYK-RGFQSSKLFYTTQ--STQADFKSCLSVFPKIRQSNNTCMYNNLLFASACS------------ 74 (607)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~--~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~------------ 74 (607)
+++..+++.-....+.. +..|+||||+|+. +++.+++++|++.+......+..+.+++|.|...+
T Consensus 156 eiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe 235 (764)
T PHA02716 156 DLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIE 235 (764)
T ss_pred HHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 34445554432344555 7789999999865 46789999999888777766666666666664333
Q ss_pred CccchhccCCCCCHHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCCCccCC
Q psy1308 75 LALTLLECQSIKDLTLFRA-------------------------------------ARYGSAKELKTFIENSKLDVNMRH 117 (607)
Q Consensus 75 ~~~~~~~~~~~g~t~Lh~A-------------------------------------~~~g~~~~v~~Ll~~~~~~~~~~d 117 (607)
.+..++.++..|+||||+| +..|+.+++++|+++| +++|.+|
T Consensus 236 ~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G-AdIN~kD 314 (764)
T PHA02716 236 LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG-VKLHYKD 314 (764)
T ss_pred cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC-CceeccC
Confidence 2233445566666666643 2345556666666665 6666666
Q ss_pred CCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCC--CchHHHHHH--------------cCCccHHHHHHhcCCCccc
Q psy1308 118 PLGWTPLHVAAI--NGKVDNVRVLLEAGANPNLGDL--FNTVHRTAA--------------EKKMNPFEVLLKREDEFND 179 (607)
Q Consensus 118 ~~g~tpLh~A~~--~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~--------------~~~~~~~~~Ll~~g~~~~~ 179 (607)
..|+||||+|+. .++.+++++|+++|++++.+|. +||||+|+. .++.+++++|+++|++++.
T Consensus 315 ~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~ 394 (764)
T PHA02716 315 SAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA 394 (764)
T ss_pred CCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence 666666666543 3456666666666666666553 446666543 2455666666666666665
Q ss_pred cCCCCcCcCCcchhhH----HHhcCCHHHHHHHHhc
Q psy1308 180 VLNPNMTFLGFSALHY----GVVAGNTEVVELLLKS 211 (607)
Q Consensus 180 ~~~~~~d~~g~TpLh~----A~~~g~~~~v~~Ll~~ 211 (607)
.+.. |+||||. |...++.+++++|++.
T Consensus 395 kn~~-----G~TPLh~y~~~a~n~~~~dIvklLis~ 425 (764)
T PHA02716 395 VNCL-----GYTPLTSYICTAQNYMYYDIIDCLISD 425 (764)
T ss_pred cCCC-----CCChHHHHHHHHHhcChHHHHHHHHhC
Confidence 5333 6666662 1123455565555554
No 29
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.97 E-value=3e-29 Score=258.36 Aligned_cols=291 Identities=21% Similarity=0.290 Sum_probs=201.0
Q ss_pred ccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCC-------CCCC-ceeeeeccCCCChhHHHHHHHHHhccCcCCce
Q psy1308 258 RKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTD-------DDHP-LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAF 329 (607)
Q Consensus 258 ~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~-------~~~p-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~ 329 (607)
.+..+...|.+.++||+.+++.+..++..+...... ...+ .+++|.||+|+|||.+|+.+|..+. .+|
T Consensus 61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~----~pf 136 (412)
T PRK05342 61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD----VPF 136 (412)
T ss_pred CHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC----CCc
Confidence 344567778889999999999998877543222211 1112 3799999999999999999998874 469
Q ss_pred EEeecccccccchhHhhhcCCCCCccCCCCchhhHH-------HhhCCCeEEEEecCCccCHH--------------HHH
Q psy1308 330 IRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKR-------LKKCPNAVVLFDEVDKAHPD--------------VLT 388 (607)
Q Consensus 330 ~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~-------~~~~~~~vl~lDEiek~~~~--------------~~~ 388 (607)
+.++++.+.. .||+|.+....+..+ ++.+.++||||||||++++. +|+
T Consensus 137 ~~id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~ 205 (412)
T PRK05342 137 AIADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQ 205 (412)
T ss_pred eecchhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHH
Confidence 9999987643 467776554444433 34567899999999999763 999
Q ss_pred HHHHhhccce--eecCCCcEEecCceEEEEecCc---------chHHHHHHHhhhhhcccccccCCCCcccccCCCcchh
Q psy1308 389 VLLQLFDEGR--LTDGKGKTIECKDAIFVMTSNL---------ASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVT 457 (607)
Q Consensus 389 ~Ll~~~~~~~--~~~~~g~~~~~~~~~iI~tsn~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (607)
.||++|+... +++.+|++.++.+.++|+|||+ |.+.+.+...... ...+ ..+........
T Consensus 206 ~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~--~~gf-------~~~~~~~~~~~ 276 (412)
T PRK05342 206 ALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKK--GIGF-------GAEVKSKKEKR 276 (412)
T ss_pred HHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhc--ccCC-------ccccccccccc
Confidence 9999998443 2456777777777788888877 4444443221110 0000 00000000000
Q ss_pred cchhhhhhhhhHHHHhc-cCChhhhccccceeeeccCCHHHHHHHHHHHHHHH----HHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 458 ISRHFKDHVVQPILKRH-FRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFW----AKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 458 ~~~~~~~~~~~~~l~~~-f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~----~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
......+.+..+.|.+. |+ |||++|+|.+++|.||+.+++.+|+...++.+ .+.+ ...++.++++++++++|+
T Consensus 277 ~~~~~~~~~~~~dL~~~gf~-PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l-~~~~i~L~~t~~al~~Ia 354 (412)
T PRK05342 277 TEGELLKQVEPEDLIKFGLI-PEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLF-EMDGVELEFTDEALEAIA 354 (412)
T ss_pred hhHHHHHhcCHHHHHHHhhh-HHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEECHHHHHHHH
Confidence 01233344444556665 77 99999999999999999999999998654444 3444 446999999999999999
Q ss_pred c-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEEEEEec
Q psy1308 533 D-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQW 577 (607)
Q Consensus 533 ~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~ 577 (607)
+ +|+..+|||+|++.|++.+.+++.+.-...+ ...++|+.+.
T Consensus 355 ~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~---~~~v~I~~~~ 397 (412)
T PRK05342 355 KKAIERKTGARGLRSILEEILLDVMFELPSRED---VEKVVITKEV 397 (412)
T ss_pred HhCCCCCCCCchHHHHHHHHhHHHHHhccccCC---CceEEECHHH
Confidence 7 8999999999999999999999976643222 2345554443
No 30
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-30 Score=265.84 Aligned_cols=236 Identities=20% Similarity=0.267 Sum_probs=204.8
Q ss_pred HhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhh
Q psy1308 267 KDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKL 346 (607)
Q Consensus 267 ~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~l 346 (607)
...++|++.++..+.+.+.+.... ..++++.|++||||..+||.||+...+. +.||+++||+.++.+...++|
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s------~a~VLI~GESGtGKElvAr~IH~~S~R~-~~PFVavNcaAip~~l~ESEL 212 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPS------DASVLITGESGTGKELVARAIHQASPRA-KGPFIAVNCAAIPENLLESEL 212 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHHhhCccc-CCCceeeecccCCHHHHHHHh
Confidence 346999999999999999888754 4589999999999999999999999887 789999999999999999999
Q ss_pred hcCCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 347 IGAPPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 347 lg~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
||+.+| |+|.... ..+.++.+++|++|||||+.+|.++|..||.+++++.++..+|......+++||.+||.+.++.
T Consensus 213 FGhekGAFTGA~~~--r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~ 290 (464)
T COG2204 213 FGHEKGAFTGAITR--RIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEE 290 (464)
T ss_pred hcccccCcCCcccc--cCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHH
Confidence 999988 8886443 4578999999999999999999999999999999999999999888889999999999766554
Q ss_pred HHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC---CHHHHHHHH
Q psy1308 426 AQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF---SKSELHTLV 502 (607)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl---~~~~~~~i~ 502 (607)
.. .+.|+ ++||+|++.+.+..|. +++||..++
T Consensus 291 v~--------------------------------------------~G~FR-eDLyyRLnV~~i~iPpLRER~EDIp~L~ 325 (464)
T COG2204 291 VA--------------------------------------------AGRFR-EDLYYRLNVVPLRLPPLRERKEDIPLLA 325 (464)
T ss_pred HH--------------------------------------------cCCcH-HHHHhhhccceecCCcccccchhHHHHH
Confidence 32 45687 9999999998777775 668999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHH
Q psy1308 503 CRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAH 560 (607)
Q Consensus 503 ~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~ 560 (607)
.+++.+.+.+... -...++++++..|.. |+||+|+|+|+|++++.+.-.-...+
T Consensus 326 ~hfl~~~~~~~~~---~~~~~s~~a~~~L~~-y~WPGNVREL~N~ver~~il~~~~~i 379 (464)
T COG2204 326 EHFLKRFAAELGR---PPKGFSPEALAALLA-YDWPGNVRELENVVERAVILSEGPEI 379 (464)
T ss_pred HHHHHHHHHHcCC---CCCCCCHHHHHHHHh-CCCChHHHHHHHHHHHHHhcCCcccc
Confidence 9999988876532 256899999999996 99999999999999998765443333
No 31
>PHA02946 ankyin-like protein; Provisional
Probab=99.97 E-value=3.7e-30 Score=272.12 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=133.2
Q ss_pred CchHHHHHHh--cCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHh
Q psy1308 30 QSSKLFYTTQ--STQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIE 107 (607)
Q Consensus 30 g~t~L~~A~~--~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 107 (607)
+.++||.++. .++.+++++|+..+..+. ..|..|.||||+||..|+.++|++|++
T Consensus 37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn-----------------------~~d~~G~TpLh~Aa~~g~~eiv~lLL~ 93 (446)
T PHA02946 37 NYHILHAYCGIKGLDERFVEELLHRGYSPN-----------------------ETDDDGNYPLHIASKINNNRIVAMLLT 93 (446)
T ss_pred CChHHHHHHHhcCCCHHHHHHHHHCcCCCC-----------------------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3688888764 446788999988776554 456667777777777777777777777
Q ss_pred cCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCC---CCCCchHHHHHHcCCccHHHHHHhcCCCccccCC
Q psy1308 108 NSKLDVNMRHPLGWTPLHVAAING--KVDNVRVLLEAGANPNL---GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLN 182 (607)
Q Consensus 108 ~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~---~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 182 (607)
+| +++|.+|..|+||||+|+..+ ..+++++|+++|++++. .++.|||| ||..++.+++++|+++|++++..+.
T Consensus 94 ~G-Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~ 171 (446)
T PHA02946 94 HG-ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK 171 (446)
T ss_pred Cc-CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCC
Confidence 66 777777777777777766654 35667777777777763 23345665 5556667777777777776665533
Q ss_pred CCcCcCCcchhhHHHhcC--CHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh--HHHHHHHHHHhhhhHHhhHHHhhcc
Q psy1308 183 PNMTFLGFSALHYGVVAG--NTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN--IKQILQKYAEKYADLQREKEAEERR 258 (607)
Q Consensus 183 ~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~ 258 (607)
.|+||||+|+..+ +.+++++|+++|+|++.+|.+|+||||+|+..+ +.+++++|+. +++.. ..+..+
T Consensus 172 -----~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin---~~d~~G 242 (446)
T PHA02946 172 -----FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN---KQNKFG 242 (446)
T ss_pred -----CCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC---CCCCCC
Confidence 3777777766543 356677777777777777777777777777654 5666666663 45443 335566
Q ss_pred cccHHHHH
Q psy1308 259 KYPLEQRL 266 (607)
Q Consensus 259 ~~~L~~~l 266 (607)
.+||+.+.
T Consensus 243 ~TpLh~A~ 250 (446)
T PHA02946 243 DSPLTLLI 250 (446)
T ss_pred CCHHHHHH
Confidence 66664433
No 32
>KOG0510|consensus
Probab=99.97 E-value=3.9e-30 Score=267.47 Aligned_cols=296 Identities=16% Similarity=0.154 Sum_probs=235.7
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHH----------HccCccchhccCCCCCHHHHHH
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFAS----------ACSLALTLLECQSIKDLTLFRA 93 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~----------~~~~~~~~~~~~~~g~t~Lh~A 93 (607)
..+|.+|+||||+|+.....+.+++|++.++..+..+..+..++|.|. +..++.+.+..|..|.||||+|
T Consensus 82 ~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A 161 (929)
T KOG0510|consen 82 YAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLA 161 (929)
T ss_pred hhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHH
Confidence 447889999999999999999999999999999999999999998884 3445566788899999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-----cCCCCCCCCC--CchHHHHHHcCCccH
Q psy1308 94 ARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLE-----AGANPNLGDL--FNTVHRTAAEKKMNP 166 (607)
Q Consensus 94 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-----~ga~~~~~d~--~~~l~~A~~~~~~~~ 166 (607)
|..++.+..+.|++.+ +++-..|.+|++|+|.|+.+|..++.++.+. .+..+|..+. .+|||.|+..|++++
T Consensus 162 ~~~~~~E~~k~Li~~~-a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~ 240 (929)
T KOG0510|consen 162 ARKNKVEAKKELINKG-ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEM 240 (929)
T ss_pred HhcChHHHHHHHHhcC-CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHH
Confidence 9999999889999988 9999999999999999999999999999997 5677777554 569999999999999
Q ss_pred HHHHHhcCCCccccCC----------CCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHH
Q psy1308 167 FEVLLKREDEFNDVLN----------PNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236 (607)
Q Consensus 167 ~~~Ll~~g~~~~~~~~----------~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~ 236 (607)
++.+|+.|+....... +..|.+|.||||+||..|+.++++.|+..|++++.+++++.||||.|+..|+..
T Consensus 241 lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~n 320 (929)
T KOG0510|consen 241 LKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRIN 320 (929)
T ss_pred HHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHH
Confidence 9999998876543321 346788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHH
Q psy1308 237 ILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQ 316 (607)
Q Consensus 237 ~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~ 316 (607)
.++.|++ -.+....++.|..+.+|| ++..+++.-+.+.-.+++...... .+
T Consensus 321 tv~rLL~-~~~~rllne~D~~g~tpL------Hlaa~~gH~~v~qlLl~~GA~~~~----------~~------------ 371 (929)
T KOG0510|consen 321 TVERLLQ-ESDTRLLNESDLHGMTPL------HLAAKSGHDRVVQLLLNKGALFLN----------MS------------ 371 (929)
T ss_pred HHHHHHh-CcCccccccccccCCCch------hhhhhcCHHHHHHHHHhcChhhhc----------cc------------
Confidence 9999998 445555667788899999 444444444444444443332110 00
Q ss_pred HHHHhccCcCCceEEeecccccccchhHhhhcCCCCCcc
Q psy1308 317 LAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLG 355 (607)
Q Consensus 317 la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g 355 (607)
..+.+++++++.|...++....+.|-+...++|
T Consensus 372 ------e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~ 404 (929)
T KOG0510|consen 372 ------EADSDGNTALHLAAKYGNTSAVQKLISHGADIG 404 (929)
T ss_pred ------ccccCCchhhhHHHHhccHHHHHHHHHcCCcee
Confidence 114667777777777777666655544444444
No 33
>PHA02798 ankyrin-like protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=273.86 Aligned_cols=221 Identities=19% Similarity=0.160 Sum_probs=185.8
Q ss_pred cCCchHHHHH--HhcCChhHHHHHhcCCCcccccccccCChHHHHH---------------HccCccchhccCCCCCHHH
Q psy1308 28 GFQSSKLFYT--TQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFAS---------------ACSLALTLLECQSIKDLTL 90 (607)
Q Consensus 28 ~~g~t~L~~A--~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~---------------~~~~~~~~~~~~~~g~t~L 90 (607)
..|.|+++.+ ...++.+++++|++.|..+...+.++.++++.+. +...+..++..|..|.|||
T Consensus 34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpL 113 (489)
T PHA02798 34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113 (489)
T ss_pred cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHH
Confidence 4566776533 3445889999999999988888888888887653 3345566788899999999
Q ss_pred HHHHHcC---CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCCC---CCchHHHHHHc
Q psy1308 91 FRAARYG---SAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGK---VDNVRVLLEAGANPNLGD---LFNTVHRTAAE 161 (607)
Q Consensus 91 h~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d---~~~~l~~A~~~ 161 (607)
|+|+.++ +.+++++|+++| ++++.+|..|.||||+|++.++ .+++++|+++|++++..+ +.||||.++..
T Consensus 114 h~a~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~ 192 (489)
T PHA02798 114 YCLLSNGYINNLEILLFMIENG-ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKY 192 (489)
T ss_pred HHHHHcCCcChHHHHHHHHHcC-CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHh
Confidence 9999986 789999999999 9999999999999999999988 999999999999999864 35799988765
Q ss_pred ----CCccHHHHHHhcCCCccccC----------------------------------CCCcCcCCcchhhHHHhcCCHH
Q psy1308 162 ----KKMNPFEVLLKREDEFNDVL----------------------------------NPNMTFLGFSALHYGVVAGNTE 203 (607)
Q Consensus 162 ----~~~~~~~~Ll~~g~~~~~~~----------------------------------~~~~d~~g~TpLh~A~~~g~~~ 203 (607)
++.+++++|+++|++++..+ -+.+|..|+||||+|+.+|+.+
T Consensus 193 ~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~ 272 (489)
T PHA02798 193 NIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRK 272 (489)
T ss_pred ccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHH
Confidence 47899999999998877532 1235667999999999999999
Q ss_pred HHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 204 VVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 204 ~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
++++|+++|||++.+|..|+||||+|+..++.++++.|++.+++..
T Consensus 273 ~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 273 IFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred HHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence 9999999999999999999999999999999999999998887765
No 34
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=270.66 Aligned_cols=233 Identities=16% Similarity=0.110 Sum_probs=188.9
Q ss_pred hhhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHH---------------
Q psy1308 4 ILVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLL--------------- 68 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~--------------- 68 (607)
+.....+++..++++ ....+..+..|+||||+||..|+.+++++|+..+..... ..+.++++
T Consensus 45 ~~~g~~e~vk~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll 121 (477)
T PHA02878 45 VEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIIL 121 (477)
T ss_pred HHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHH
Confidence 334555667777754 345667788999999999999999999999875432221 11111111
Q ss_pred ----------------------------HHHHccCccchhccCCC-CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q psy1308 69 ----------------------------FASACSLALTLLECQSI-KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPL 119 (607)
Q Consensus 69 ----------------------------~a~~~~~~~~~~~~~~~-g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 119 (607)
...+...+..++..+.. |.||||+||..|+.+++++|++.| +++|.+|..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g-ad~n~~d~~ 200 (477)
T PHA02878 122 TNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYG-ANVNIPDKT 200 (477)
T ss_pred hCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC-CCCCCcCCC
Confidence 11233455566677777 999999999999999999999999 999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHc-CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHH
Q psy1308 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAE-KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYG 196 (607)
Q Consensus 120 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A 196 (607)
|+||||+|+..|+.+++++|+++|++++.+|. +||||+|+.. ++.+++++|+++|++++..+. ..|+||||+|
T Consensus 201 g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~----~~g~TpLh~A 276 (477)
T PHA02878 201 NNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY----ILGLTALHSS 276 (477)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC----CCCCCHHHHH
Confidence 99999999999999999999999999999775 6799999976 789999999999999987653 2499999999
Q ss_pred HhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh-HHHHHHHHHHhhh
Q psy1308 197 VVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN-IKQILQKYAEKYA 246 (607)
Q Consensus 197 ~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~-~~~~~~~ll~~~~ 246 (607)
.++.+++++|+++|+|++.+|..|+||||+|+..+ ..++++.|+....
T Consensus 277 --~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~ 325 (477)
T PHA02878 277 --IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNIC 325 (477)
T ss_pred --ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHH
Confidence 57889999999999999999999999999999753 4567777776543
No 35
>KOG0509|consensus
Probab=99.97 E-value=1.9e-30 Score=265.39 Aligned_cols=200 Identities=27% Similarity=0.251 Sum_probs=178.1
Q ss_pred chHHHHHHhcCChhHHHHHhcC-CCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcC
Q psy1308 31 SSKLFYTTQSTQADFKSCLSVF-PKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENS 109 (607)
Q Consensus 31 ~t~L~~A~~~g~~~~v~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 109 (607)
.+-++.|++.|.++.++.|++. +..+ +..|.+|.|+||+||.+++++++++|+++|
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v-----------------------~~~D~~g~tlLHWAAiNNrl~v~r~li~~g 101 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESV-----------------------NNPDREGVTLLHWAAINNRLDVARYLISHG 101 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCC-----------------------CCCCcCCccceeHHHHcCcHHHHHHHHHcC
Confidence 4668999999999999999876 4333 467889999999999999999999999999
Q ss_pred CCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCc--hHHHHHHcCCccHHHHHHhcCCCccccCCCCcC
Q psy1308 110 KLDVNMRH-PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN--TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMT 186 (607)
Q Consensus 110 ~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~--~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d 186 (607)
+++|..+ ..|.|||||||++|+..+|.+|+++||||+.+|.+| |+|.|++.++.-.+.+||.+|++++..|++
T Consensus 102 -advn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~--- 177 (600)
T KOG0509|consen 102 -ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNN--- 177 (600)
T ss_pred -CCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCC---
Confidence 9999998 678999999999999999999999999999998765 999999999999999999999999988666
Q ss_pred cCCcchhhHHHhcCCHHHHHHHHhcCCCCCccC-CCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccH
Q psy1308 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKD-NSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPL 262 (607)
Q Consensus 187 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L 262 (607)
|+||||||+..|+...+..||+.|+++...| +.|.||||+|+..|+..++..+++.+++... .+.+|.+|+
T Consensus 178 --grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~---~~~~g~tp~ 249 (600)
T KOG0509|consen 178 --GRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDK---TNTNGKTPF 249 (600)
T ss_pred --CCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccc---cccCCCCHH
Confidence 9999999999999988999999999999998 9999999999999999999955555555543 233456665
No 36
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.96 E-value=9.5e-29 Score=263.27 Aligned_cols=236 Identities=17% Similarity=0.157 Sum_probs=196.9
Q ss_pred hhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcc-----------------------ccccc
Q psy1308 5 LVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIR-----------------------QSNNT 61 (607)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~-----------------------~~~~~ 61 (607)
.....+++..++. .....+..+..|.||||+|+..|+.+++++|+..+... ...+.
T Consensus 44 ~~g~~~iv~~Ll~-~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~ 122 (434)
T PHA02874 44 RSGDAKIVELFIK-HGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDA 122 (434)
T ss_pred HcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCC
Confidence 3445556666654 34455667788999999999999999999999876532 23356
Q ss_pred ccCChHHHHHHcc----------CccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC
Q psy1308 62 CMYNNLLFASACS----------LALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAING 131 (607)
Q Consensus 62 ~~~~~l~~a~~~~----------~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 131 (607)
.+.+++|.|+..+ .+..++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|
T Consensus 123 ~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~g 201 (434)
T PHA02874 123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEYG 201 (434)
T ss_pred CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcC
Confidence 7789999986443 44556778899999999999999999999999999 999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCC--CCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcC-CHHHHHHH
Q psy1308 132 KVDNVRVLLEAGANPNLGD--LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAG-NTEVVELL 208 (607)
Q Consensus 132 ~~~~v~~Ll~~ga~~~~~d--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g-~~~~v~~L 208 (607)
+.+++++|+++|++++..+ ++||||.|+..+. +++++|+ .|++++.. |..|+||||+|+..+ +.+++++|
T Consensus 202 ~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~-----d~~G~TpLh~A~~~~~~~~iv~~L 274 (434)
T PHA02874 202 DYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQ-----DIDGSTPLHHAINPPCDIDIIDIL 274 (434)
T ss_pred CHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCc-----CCCCCCHHHHHHhcCCcHHHHHHH
Confidence 9999999999999998865 4679999999765 5667666 57887765 445999999999876 78999999
Q ss_pred HhcCCCCCccCCCCCCCCcchhhhh-HHHHHHHHHHhhhhHH
Q psy1308 209 LKSGADPTVKDNSGHIPSDYAEDAN-IKQILQKYAEKYADLQ 249 (607)
Q Consensus 209 l~~gad~~~~d~~g~Tpl~~A~~~~-~~~~~~~ll~~~~~~~ 249 (607)
+++|+|++.+|..|+||||+|+..+ ..++++.++..+....
T Consensus 275 l~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~ 316 (434)
T PHA02874 275 LYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIK 316 (434)
T ss_pred HHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchh
Confidence 9999999999999999999999887 7788898988776543
No 37
>KOG0509|consensus
Probab=99.96 E-value=2.2e-29 Score=257.65 Aligned_cols=195 Identities=24% Similarity=0.248 Sum_probs=175.3
Q ss_pred hHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHH
Q psy1308 11 LVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTL 90 (607)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~L 90 (607)
-+..++.......+..|..|-|+||+||.+++.+++++|++.++.++.. ....+.|||
T Consensus 59 ~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~----------------------gG~l~stPL 116 (600)
T KOG0509|consen 59 TVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAI----------------------GGVLGSTPL 116 (600)
T ss_pred HHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCcccc----------------------CCCCCCCcc
Confidence 3444554446666777889999999999999999999999998877632 235788999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHH
Q psy1308 91 FRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFE 168 (607)
Q Consensus 91 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~ 168 (607)
|+||++|++.+|++|+++| +|++.+|.+|.||||+|++.|+..+|-+|+.+|+|++.+|. .||||+||..|+...+.
T Consensus 117 HWAar~G~~~vv~lLlqhG-Adpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~ 195 (600)
T KOG0509|consen 117 HWAARNGHISVVDLLLQHG-ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVR 195 (600)
T ss_pred hHHHHcCcHHHHHHHHHcC-CCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999886 56999999999988899
Q ss_pred HHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhh
Q psy1308 169 VLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDA 232 (607)
Q Consensus 169 ~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~ 232 (607)
.|++.|+.++..+++ .|+||||+|+..|+..++.+|++.|++.+.+|.+|.||+.+|.++
T Consensus 196 ~LL~f~a~~~~~d~~----~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 196 RLLKFGASLLLTDDN----HGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred HHHHhcccccccccc----cCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence 999999999988644 499999999999999999977788899999999999999999887
No 38
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=260.53 Aligned_cols=198 Identities=16% Similarity=0.162 Sum_probs=169.5
Q ss_pred hchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCC
Q psy1308 6 VQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSI 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~ 85 (607)
....+++..++.. ...++..+..+.||||+|+..|+.+++++|+..+.... ...+..
T Consensus 45 ~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~----------------------~~~~~~ 101 (413)
T PHA02875 45 FRDSEAIKLLMKH-GAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD----------------------DVFYKD 101 (413)
T ss_pred cCCHHHHHHHHhC-CCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccc----------------------ccccCC
Confidence 3444555555543 34455556778999999999999999999998765432 134567
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCC
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKK 163 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~ 163 (607)
|.||||+|+..|+.+++++|++.| ++++.++..|.||||+|+..|+.+++++|+++|++++.+|. +||||+|+..|+
T Consensus 102 g~tpL~~A~~~~~~~iv~~Ll~~g-ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~ 180 (413)
T PHA02875 102 GMTPLHLATILKKLDIMKLLIARG-ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180 (413)
T ss_pred CCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 999999999999999999999999 99999999999999999999999999999999999998765 679999999999
Q ss_pred ccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCcc---CCCCCCCCcchhh
Q psy1308 164 MNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK---DNSGHIPSDYAED 231 (607)
Q Consensus 164 ~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~---d~~g~Tpl~~A~~ 231 (607)
.+++++|+++|++++..+.. .+.||+|+|+..|+.+++++|+++|+|++.. +..+.||+++++.
T Consensus 181 ~eiv~~Ll~~ga~~n~~~~~----~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~ 247 (413)
T PHA02875 181 IAICKMLLDSGANIDYFGKN----GCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICN 247 (413)
T ss_pred HHHHHHHHhCCCCCCcCCCC----CCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence 99999999999999987554 1468999999999999999999999999876 6778899987653
No 39
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=234.55 Aligned_cols=175 Identities=18% Similarity=0.196 Sum_probs=153.9
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcC--CHHHHHH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYG--SAKELKT 104 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~ 104 (607)
.+.+.||||+|+..|+.++++.|+... +..+..|.||||+|+..+ +.+++++
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~--------------------------n~~~~~g~TpLh~a~~~~~~~~eiv~~ 71 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKFV--------------------------NDCNDLYETPIFSCLEKDKVNVEILKF 71 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHhh--------------------------hccCccCCCHHHHHHHcCCCCHHHHHH
Confidence 345689999999999999999997431 356788999999999865 8999999
Q ss_pred HHhcCCCCCccCC-CCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCC--CchHHHHHHc--CCccHHHHHHhcCCC
Q psy1308 105 FIENSKLDVNMRH-PLGWTPLHVAAIN---GKVDNVRVLLEAGANPNLGDL--FNTVHRTAAE--KKMNPFEVLLKREDE 176 (607)
Q Consensus 105 Ll~~~~~~~~~~d-~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~--~~~~~~~~Ll~~g~~ 176 (607)
|+++| +++|.++ ..|+||||+|+.. ++.+++++|+++|+++|.+|. .||||+|+.. ++.+++++|+++|++
T Consensus 72 Ll~~g-advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad 150 (209)
T PHA02859 72 LIENG-ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS 150 (209)
T ss_pred HHHCC-CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence 99999 9999997 4899999998864 479999999999999999765 6799998864 678999999999999
Q ss_pred ccccCCCCcCcCCcchhhH-HHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh
Q psy1308 177 FNDVLNPNMTFLGFSALHY-GVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233 (607)
Q Consensus 177 ~~~~~~~~~d~~g~TpLh~-A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~ 233 (607)
++..+. .|.||||. |+..++.+++++|+++|+|++.+|..|+||||+|...+
T Consensus 151 in~~d~-----~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 151 FLNKDF-----DNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred cccccC-----CCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 987744 49999995 56788999999999999999999999999999998765
No 40
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.96 E-value=2.3e-28 Score=274.74 Aligned_cols=253 Identities=23% Similarity=0.220 Sum_probs=211.5
Q ss_pred hhhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCC-----------------------------
Q psy1308 4 ILVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPK----------------------------- 54 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~----------------------------- 54 (607)
+.....+++..+++. ....+..+..|.||||+|+..|+.+++++|+....
T Consensus 186 a~~G~~~iv~~LL~~-Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~ 264 (682)
T PHA02876 186 AERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGF 264 (682)
T ss_pred HHCCCHHHHHHHHHC-CCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCC
Confidence 344455566666543 44455667788999999999999999888775443
Q ss_pred cccccccccCChHHHHHHccC-----------ccchhccCCCCCHHHHHHHHcC-CHHHHHHHHhcCCCCCccCCCCCCc
Q psy1308 55 IRQSNNTCMYNNLLFASACSL-----------ALTLLECQSIKDLTLFRAARYG-SAKELKTFIENSKLDVNMRHPLGWT 122 (607)
Q Consensus 55 ~~~~~~~~~~~~l~~a~~~~~-----------~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t 122 (607)
.....+.++.+++|+|+..+. +..++..|..|.||||+|+..| +.++++.|+..| ++++.+|..|.|
T Consensus 265 ~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g-adin~~d~~g~T 343 (682)
T PHA02876 265 SVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLG-ADVNAADRLYIT 343 (682)
T ss_pred CCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC-CCCCCcccCCCc
Confidence 233445678999999875443 3345678899999999999999 699999999999 999999999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhc
Q psy1308 123 PLHVAAIN-GKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA 199 (607)
Q Consensus 123 pLh~A~~~-g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~ 199 (607)
|||+|+.. ++.+++++|+++|++++.+|. +||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..
T Consensus 344 pLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~-----g~T~Lh~A~~~ 418 (682)
T PHA02876 344 PLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK-----IGTALHFALCG 418 (682)
T ss_pred HHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC-----CCchHHHHHHc
Confidence 99999985 578999999999999999775 67999999999999999999999999887554 99999999976
Q ss_pred CC-HHHHHHHHhcCCCCCccCCCCCCCCcchhhhh-HHHHHHHHHHhhhhHHhhHHHhhcccccHHHHH
Q psy1308 200 GN-TEVVELLLKSGADPTVKDNSGHIPSDYAEDAN-IKQILQKYAEKYADLQREKEAEERRKYPLEQRL 266 (607)
Q Consensus 200 g~-~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l 266 (607)
++ ..++++|+++|++++.+|..|+||||+|+..+ +.+++++|++.|++.. ..+..+.+|+..+.
T Consensus 419 ~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n---~~d~~g~tpl~~a~ 484 (682)
T PHA02876 419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVN---AINIQNQYPLLIAL 484 (682)
T ss_pred CCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCC---CCCCCCCCHHHHHH
Confidence 65 56799999999999999999999999999876 6899999999999876 44678889986554
No 41
>KOG0508|consensus
Probab=99.95 E-value=1.2e-28 Score=241.40 Aligned_cols=198 Identities=21% Similarity=0.275 Sum_probs=172.9
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCC-cccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPK-IRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTF 105 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L 105 (607)
...|.|||..||++||.++|++|++... ....... ....-....|.+||-.|+..||+++|+.|
T Consensus 39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~Gs---------------V~FDge~IegappLWaAsaAGHl~vVk~L 103 (615)
T KOG0508|consen 39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGS---------------VRFDGETIEGAPPLWAASAAGHLEVVKLL 103 (615)
T ss_pred ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCce---------------EEeCCcccCCCchhhHHhccCcHHHHHHH
Confidence 4457899999999999999999998532 2222111 11123346789999999999999999999
Q ss_pred HhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCC
Q psy1308 106 IENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNP 183 (607)
Q Consensus 106 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 183 (607)
++++ +++|.......|||--||..|+.++||+|+++|+|+++.|. .|.||+||..|+.+++++|++.|+|+|.+...
T Consensus 104 ~~~g-a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~k 182 (615)
T KOG0508|consen 104 LRRG-ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYK 182 (615)
T ss_pred HHhc-CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhccc
Confidence 9999 99999998899999999999999999999999999999776 56999999999999999999999999988544
Q ss_pred CcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhh
Q psy1308 184 NMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246 (607)
Q Consensus 184 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~ 246 (607)
|+|+||.|++.|+.+++++|+++|+.+.. |..|.|||..|+..|+.++|.+|+....
T Consensus 183 -----GNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~~~ 239 (615)
T KOG0508|consen 183 -----GNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQCET 239 (615)
T ss_pred -----CchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhcCCc
Confidence 99999999999999999999999998865 5669999999999999999999996433
No 42
>PHA02917 ankyrin-like protein; Provisional
Probab=99.95 E-value=8.4e-27 Score=255.73 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=180.8
Q ss_pred CCCCcCCchHHHHHHhc---CChhHHHHHhcCCCcccccccccCChHHHHHHccCcc-------ch-hc---cC-CCCCH
Q psy1308 24 PYKRGFQSSKLFYTTQS---TQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLAL-------TL-LE---CQ-SIKDL 88 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~---g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~-------~~-~~---~~-~~g~t 88 (607)
+.++..|+||||+||.. |+.+++++|+..+......+..+.++++.|+..++.. .+ .. .+ .+..+
T Consensus 26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~ 105 (661)
T PHA02917 26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI 105 (661)
T ss_pred cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence 44588999999997555 8899999999999999988999999999998766521 11 11 11 12347
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCC---------------
Q psy1308 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAA--INGKVDNVRVLLEAGANPNLGDL--------------- 151 (607)
Q Consensus 89 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~ga~~~~~d~--------------- 151 (607)
++|+|+.+|+.++|++|+++| +|+|.+|..|+||||+|+ ..|+.++|++|+++|+++|..|.
T Consensus 106 ~~~~a~~~~~~e~vk~Ll~~G-adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~ 184 (661)
T PHA02917 106 FSYMKSKNVDVDLIKVLVEHG-FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRN 184 (661)
T ss_pred HHHHHhhcCCHHHHHHHHHcC-CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccc
Confidence 788899999999999999999 999999999999999654 57899999999999999986542
Q ss_pred -CchHHHHHH-----------cCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCH--HHHHHHHhcCCCCC-
Q psy1308 152 -FNTVHRTAA-----------EKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNT--EVVELLLKSGADPT- 216 (607)
Q Consensus 152 -~~~l~~A~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~--~~v~~Ll~~gad~~- 216 (607)
.||||+|+. .++.+++++|+++|++++..+.. |+||||+|+.+|+. ++|++|++ |++++
T Consensus 185 ~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~-----G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~ 258 (661)
T PHA02917 185 CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKN-----YCTALQYYIKSSHIDIDIVKLLMK-GIDNTA 258 (661)
T ss_pred cccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCC-----CCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence 489999986 45889999999999999987544 99999999999985 79999985 88875
Q ss_pred ---ccCCCCCCCCcchhhh---------hHHHHHHHHHHhhhh
Q psy1308 217 ---VKDNSGHIPSDYAEDA---------NIKQILQKYAEKYAD 247 (607)
Q Consensus 217 ---~~d~~g~Tpl~~A~~~---------~~~~~~~~ll~~~~~ 247 (607)
..|..|.||+++|+.- ...++++.|++.|++
T Consensus 259 ~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~ 301 (661)
T PHA02917 259 YSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP 301 (661)
T ss_pred cccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence 4677889999999842 177999999999976
No 43
>PHA02798 ankyrin-like protein; Provisional
Probab=99.95 E-value=8.8e-27 Score=251.57 Aligned_cols=189 Identities=20% Similarity=0.221 Sum_probs=164.0
Q ss_pred HHccCccchhccCCCCCHHHHHHHHc-----CCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC---CHHHHHHHHHc
Q psy1308 71 SACSLALTLLECQSIKDLTLFRAARY-----GSAKELKTFIENSKLDVNMRHPLGWTPLHVAAING---KVDNVRVLLEA 142 (607)
Q Consensus 71 ~~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~ 142 (607)
.++..+..++..+..|.||||.|+.+ ++.+++++|+++| +|+|.+|..|+||||+|+..+ +.+++++|+++
T Consensus 56 ~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G-adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~ 134 (489)
T PHA02798 56 LFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG-ADINKKNSDGETPLYCLLSNGYINNLEILLFMIEN 134 (489)
T ss_pred HHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC-CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc
Confidence 45667778888999999999999875 6799999999999 999999999999999999986 78999999999
Q ss_pred CCCCCCCCC--CchHHHHHHcCC---ccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhc----CCHHHHHHHHhcCC
Q psy1308 143 GANPNLGDL--FNTVHRTAAEKK---MNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA----GNTEVVELLLKSGA 213 (607)
Q Consensus 143 ga~~~~~d~--~~~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~----g~~~~v~~Ll~~ga 213 (607)
|++++..|. +||||+|+..++ .+++++|+++|++++..++. .|.||||.++.. ++.+++++|+++|+
T Consensus 135 Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~----~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga 210 (489)
T PHA02798 135 GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNK----EKYDTLHCYFKYNIDRIDADILKLFVDNGF 210 (489)
T ss_pred CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCc----CCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence 999999765 679999999998 89999999999999876432 389999988764 47889999888876
Q ss_pred CC---------------------------------------CccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHH
Q psy1308 214 DP---------------------------------------TVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEA 254 (607)
Q Consensus 214 d~---------------------------------------~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~ 254 (607)
++ |.+|..|+||||+|+..++.+++++|++.|++.. ..
T Consensus 211 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin---~~ 287 (489)
T PHA02798 211 IINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN---II 287 (489)
T ss_pred CcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc---cc
Confidence 44 4567789999999999999999999999999976 45
Q ss_pred hhcccccHHHHHH
Q psy1308 255 EERRKYPLEQRLK 267 (607)
Q Consensus 255 ~~~~~~~L~~~l~ 267 (607)
+..|.+||..+..
T Consensus 288 d~~G~TpL~~A~~ 300 (489)
T PHA02798 288 TELGNTCLFTAFE 300 (489)
T ss_pred CCCCCcHHHHHHH
Confidence 6788999966654
No 44
>KOG0508|consensus
Probab=99.94 E-value=2.7e-27 Score=232.07 Aligned_cols=216 Identities=17% Similarity=0.236 Sum_probs=178.7
Q ss_pred HHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCcc
Q psy1308 36 YTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNM 115 (607)
Q Consensus 36 ~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 115 (607)
-|++.|+...+..|+....... ...+.....+|.|||..||++||.++|++|+++.++++..
T Consensus 10 naa~~g~l~~l~~ll~~~s~~e------------------i~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~ 71 (615)
T KOG0508|consen 10 NAARDGKLQLLAKLLINSSNEE------------------IISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQ 71 (615)
T ss_pred HHhhhhhHHHHHHHHhCCchHH------------------HHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccC
Confidence 5677777777776654422100 1112245678889999999999999999999976677665
Q ss_pred CC--------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCc
Q psy1308 116 RH--------PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNM 185 (607)
Q Consensus 116 ~d--------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 185 (607)
.. ..|-+||-.|+..||.++|+.|+++|+++|.... .|||.-||..|+.+++++|+++|+|++..+..
T Consensus 72 ~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianrh-- 149 (615)
T KOG0508|consen 72 GGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRH-- 149 (615)
T ss_pred CceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccC--
Confidence 42 4688999999999999999999999999998543 57999999999999999999999999988555
Q ss_pred CcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHH
Q psy1308 186 TFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQR 265 (607)
Q Consensus 186 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~ 265 (607)
|.|.||+||..||.+++++|++.|||+|.++..|+|+||.|++.|+.++++.|+..++.+. .+..|.+||.
T Consensus 150 ---GhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~----~d~~GmtPL~-- 220 (615)
T KOG0508|consen 150 ---GHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID----VDGHGMTPLL-- 220 (615)
T ss_pred ---CCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee----ecCCCCchHH--
Confidence 9999999999999999999999999999999999999999999999999999999998875 3667999993
Q ss_pred HHhHhhhhHHHHHHHH
Q psy1308 266 LKDRIVGQESAINIIS 281 (607)
Q Consensus 266 l~~~i~Gq~~ai~~l~ 281 (607)
....-|....++.+.
T Consensus 221 -~Aa~tG~~~iVe~L~ 235 (615)
T KOG0508|consen 221 -LAAVTGHTDIVERLL 235 (615)
T ss_pred -HHhhhcchHHHHHHh
Confidence 334556666666554
No 45
>PHA02795 ankyrin-like protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=236.30 Aligned_cols=189 Identities=13% Similarity=0.096 Sum_probs=163.4
Q ss_pred HHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHH--cCCHHHHHHHHhcCCCCC
Q psy1308 36 YTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAAR--YGSAKELKTFIENSKLDV 113 (607)
Q Consensus 36 ~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~ 113 (607)
+|+..+..+++++|+..+....... .+...+..++|+||+|+. .|+.++|++|+++| +|+
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~-----------------~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~G-ADI 144 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFS-----------------IIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHG-AVI 144 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhh-----------------hhhhccccccHHHHHHHHhcCCCHHHHHHHHHCC-CCC
Confidence 8888888899998888776544210 001356779999999999 89999999999999 999
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC--------CCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCc
Q psy1308 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG--------DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNM 185 (607)
Q Consensus 114 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~--------d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 185 (607)
+.. ++.||||+|+..++.+++++|+++|++.+.. .+.+++|.|+..++.+++++|+++|+++|..+.
T Consensus 145 n~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~--- 219 (437)
T PHA02795 145 YKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA--- 219 (437)
T ss_pred CCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC---
Confidence 985 4589999999999999999999999854322 145689999999999999999999999998754
Q ss_pred CcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh--------HHHHHHHHHHhhhhHH
Q psy1308 186 TFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN--------IKQILQKYAEKYADLQ 249 (607)
Q Consensus 186 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~--------~~~~~~~ll~~~~~~~ 249 (607)
.|.||||+|+..|+.+++++|+++||+++.+|..|+||||+|+..| +.+++++|+++|++..
T Consensus 220 --~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~ 289 (437)
T PHA02795 220 --GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID 289 (437)
T ss_pred --CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence 4999999999999999999999999999999999999999999988 5799999999988765
No 46
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=218.11 Aligned_cols=176 Identities=18% Similarity=0.125 Sum_probs=152.1
Q ss_pred CCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCC---CCchHHH
Q psy1308 83 QSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAING--KVDNVRVLLEAGANPNLGD---LFNTVHR 157 (607)
Q Consensus 83 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d---~~~~l~~ 157 (607)
.+.+.||||+|+..|+.++|+.|++. ++..|..|.||||+|+..+ +.+++++|+++|++++.++ ++||||+
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~ 93 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH 93 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence 45678999999999999999999975 4678899999999999855 8999999999999999874 4689999
Q ss_pred HHHc---CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHh--cCCHHHHHHHHhcCCCCCccCCCCCCCCcc-hhh
Q psy1308 158 TAAE---KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVV--AGNTEVVELLLKSGADPTVKDNSGHIPSDY-AED 231 (607)
Q Consensus 158 A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~-A~~ 231 (607)
|+.. ++.+++++|+++|++++..+. .|.||||+|+. .++.+++++|+++|++++.+|..|.||||. |+.
T Consensus 94 a~~~~~~~~~eiv~~Ll~~gadin~~d~-----~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~ 168 (209)
T PHA02859 94 YLSFNKNVEPEILKILIDSGSSITEEDE-----DGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILF 168 (209)
T ss_pred HHHhCccccHHHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHh
Confidence 8864 478999999999999987744 49999999876 468999999999999999999999999995 566
Q ss_pred hhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHh
Q psy1308 232 ANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRI 270 (607)
Q Consensus 232 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i 270 (607)
.++.+++++|++.|++.. ..+..+.+|+.-+..+.+
T Consensus 169 ~~~~~iv~~Ll~~Gadi~---~~d~~g~tpl~la~~~~~ 204 (209)
T PHA02859 169 HSDKKIFDFLTSLGIDIN---ETNKSGYNCYDLIKFRNL 204 (209)
T ss_pred cCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHhhhhh
Confidence 789999999999999876 446788899966655443
No 47
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.94 E-value=7e-26 Score=244.88 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=177.1
Q ss_pred hcCChhHHHHHhcCCCcccccccccCChHHHHHHc------------cCccchhccCCCCCHHHHHHHHcC------CHH
Q psy1308 39 QSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASAC------------SLALTLLECQSIKDLTLFRAARYG------SAK 100 (607)
Q Consensus 39 ~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~------------~~~~~~~~~~~~g~t~Lh~A~~~g------~~~ 100 (607)
.....+++++|++.|..++.. ..+.++++.+... ..+..++..+ .+.||||.|+.++ +.+
T Consensus 12 ~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~ 89 (494)
T PHA02989 12 DTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKK 89 (494)
T ss_pred CcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHH
Confidence 357899999999999988776 4567777654322 3344445444 5799999998765 468
Q ss_pred HHHHHHhcCCCCCccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-CCCC--CCchHHHHHHc--CCccHHHHHHh
Q psy1308 101 ELKTFIENSKLDVNMRHPLGWTPLHVAAIN---GKVDNVRVLLEAGANP-NLGD--LFNTVHRTAAE--KKMNPFEVLLK 172 (607)
Q Consensus 101 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~-~~~d--~~~~l~~A~~~--~~~~~~~~Ll~ 172 (607)
+|++|+++| +|+|.+|..|+||||+|+.. |+.+++++|+++|+|+ +..| ++||||+|+.. ++.+++++|++
T Consensus 90 iv~~Ll~~G-adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~ 168 (494)
T PHA02989 90 IVKLLLKFG-ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS 168 (494)
T ss_pred HHHHHHHCC-CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence 999999999 99999999999999998765 6899999999999999 6655 56799998765 57899999999
Q ss_pred cCCCccccCCCCcCcCCcchhhHHHhcC----CHHHHHHHHhcCCCCCcc------------------------------
Q psy1308 173 REDEFNDVLNPNMTFLGFSALHYGVVAG----NTEVVELLLKSGADPTVK------------------------------ 218 (607)
Q Consensus 173 ~g~~~~~~~~~~~d~~g~TpLh~A~~~g----~~~~v~~Ll~~gad~~~~------------------------------ 218 (607)
+|++++... +..|.||||+|+..+ +.+++++|+++|++++.+
T Consensus 169 ~Gadi~~~~----~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~ 244 (494)
T PHA02989 169 FGVNLFEKT----SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL 244 (494)
T ss_pred cCCCccccc----cccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHH
Confidence 999988631 345999999997764 899999999999876544
Q ss_pred --------CCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHH
Q psy1308 219 --------DNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLK 267 (607)
Q Consensus 219 --------d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~ 267 (607)
|..|+||||+|+..++.+++++|++.|++.. ..+..|.+||+.+..
T Consensus 245 ~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin---~~d~~G~TpL~~A~~ 298 (494)
T PHA02989 245 KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY---NVSKDGDTVLTYAIK 298 (494)
T ss_pred hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc---ccCCCCCCHHHHHHH
Confidence 4568999999999999999999999998876 446778888866554
No 48
>KOG4177|consensus
Probab=99.93 E-value=1e-26 Score=257.19 Aligned_cols=219 Identities=21% Similarity=0.241 Sum_probs=156.2
Q ss_pred CCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHcc-----------CccchhccCCCCCHHHH
Q psy1308 23 KPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACS-----------LALTLLECQSIKDLTLF 91 (607)
Q Consensus 23 ~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~-----------~~~~~~~~~~~g~t~Lh 91 (607)
++..+.-|-||||.|+.+++.++++.++..+.........+++++|++...+ .+...+.....|.||||
T Consensus 400 ~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lh 479 (1143)
T KOG4177|consen 400 PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLH 479 (1143)
T ss_pred cccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchh
Confidence 4444555555555555555555555555555555555555555555554333 11223444455666666
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHH
Q psy1308 92 RAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEV 169 (607)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~ 169 (607)
.|+..|+.++++.|++.+ +..+.....|.|+||+|...+...+++.++++|++++.+++ +||||.|+.+|++++|++
T Consensus 480 laaq~Gh~~~~~llle~~-~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~Vkf 558 (1143)
T KOG4177|consen 480 LAAQEGHTEVVQLLLEGG-ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKF 558 (1143)
T ss_pred hhhccCCchHHHHhhhcC-CccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHH
Confidence 666666666666666655 55555555666666666666666666666666777766555 579999999999999999
Q ss_pred HHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhh
Q psy1308 170 LLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247 (607)
Q Consensus 170 Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~ 247 (607)
||++|++++..++ .|+||||.||..|+.+|+.+|+++||++|..|.+|.|||++|+..|+.++++.+...+++
T Consensus 559 LLe~gAdv~ak~~-----~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 559 LLEHGADVNAKDK-----LGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred hhhCCccccccCC-----CCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 9999999998864 399999999999999999999999999999999999999999999999999999988877
No 49
>KOG4177|consensus
Probab=99.93 E-value=1.9e-26 Score=255.20 Aligned_cols=237 Identities=24% Similarity=0.275 Sum_probs=212.2
Q ss_pred CCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHcc----------CccchhccCCCCCHHHH
Q psy1308 22 QKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACS----------LALTLLECQSIKDLTLF 91 (607)
Q Consensus 22 ~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~----------~~~~~~~~~~~g~t~Lh 91 (607)
+.....+.|.||+|.|+.+|..+++++++..+...+..+..+.+++|.+.... .....+.++..|.||+|
T Consensus 366 ~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lh 445 (1143)
T KOG4177|consen 366 QRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLH 445 (1143)
T ss_pred ccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhh
Confidence 34456778999999999999999999999999999999999999999986433 34455778899999999
Q ss_pred HHHHcC-CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCchHHHHHHcCCccHHH
Q psy1308 92 RAARYG-SAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD--LFNTVHRTAAEKKMNPFE 168 (607)
Q Consensus 92 ~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--~~~~l~~A~~~~~~~~~~ 168 (607)
.|+..| ..+++..+++.+ .++|.....|.||||+|+..|+.+++..|++.++..+... +.+++|.|+..+...+++
T Consensus 446 vaa~~g~~~~~~~~l~~~g-~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~ 524 (1143)
T KOG4177|consen 446 VAAKKGRYLQIARLLLQYG-ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAK 524 (1143)
T ss_pred hhhhcccHhhhhhhHhhcC-CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHH
Confidence 999999 888888888888 9999999999999999999999999999999997666643 456999999999999999
Q ss_pred HHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhH
Q psy1308 169 VLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248 (607)
Q Consensus 169 ~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~ 248 (607)
.++++|++++..... |.||||.||.+|+.++|++||++|||++.+++.|+||||.|+..|+.+|+.+|+++|++.
T Consensus 525 ~l~~~ga~v~~~~~r-----~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v 599 (1143)
T KOG4177|consen 525 ILLEHGANVDLRTGR-----GYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV 599 (1143)
T ss_pred HHhhcCCceehhccc-----ccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC
Confidence 999999999988655 999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhHHHhhcccccHHHHHH
Q psy1308 249 QREKEAEERRKYPLEQRLK 267 (607)
Q Consensus 249 ~~~~~~~~~~~~~L~~~l~ 267 (607)
+ ..+.++.++|..+..
T Consensus 600 n---a~d~~g~TpL~iA~~ 615 (1143)
T KOG4177|consen 600 N---AADLDGFTPLHIAVR 615 (1143)
T ss_pred C---cccccCcchhHHHHH
Confidence 7 557788888865544
No 50
>PHA02792 ankyrin-like protein; Provisional
Probab=99.93 E-value=5e-25 Score=232.91 Aligned_cols=255 Identities=11% Similarity=-0.002 Sum_probs=203.9
Q ss_pred hhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHh-cCChhHHHHHhcCCCcccccccccCChHHHHHHc----------
Q psy1308 5 LVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQ-STQADFKSCLSVFPKIRQSNNTCMYNNLLFASAC---------- 73 (607)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~---------- 73 (607)
.+..-+++..++++ ....+.++..|+||+|+|+. .++.+++++|+..|+.......+++++++....-
T Consensus 81 ~n~~lElvk~LI~~-GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 159 (631)
T PHA02792 81 DNIDIELLKLLISK-GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDEL 159 (631)
T ss_pred hcccHHHHHHHHHc-CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhc
Confidence 34556778888887 44556667778999999976 6999999999999998888888888877654321
Q ss_pred ---cCccchhccCCCCCHHHHHHHHcC-------CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHH
Q psy1308 74 ---SLALTLLECQSIKDLTLFRAARYG-------SAKELKTFIENSKLDVNMRHPLGWTPLHVAAING--KVDNVRVLLE 141 (607)
Q Consensus 74 ---~~~~~~~~~~~~g~t~Lh~A~~~g-------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~ 141 (607)
..+..++..|..|.||||+|+.++ +.++++.|+++| ++++.+|..|.||||+|+.+. ..|++++|++
T Consensus 160 ~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g-~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~ 238 (631)
T PHA02792 160 DDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHE-KEMRYYTYREHTTLYYYVDKCDIKREIFDALFD 238 (631)
T ss_pred cccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC-CCcCccCCCCChHHHHHHHcccchHHHHHHHHh
Confidence 112345677888999999999999 899999999999 999999999999999999988 7788888876
Q ss_pred cCC----------------------CCCC--C------------------------------------------------
Q psy1308 142 AGA----------------------NPNL--G------------------------------------------------ 149 (607)
Q Consensus 142 ~ga----------------------~~~~--~------------------------------------------------ 149 (607)
.-- +++. .
T Consensus 239 ~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~ 318 (631)
T PHA02792 239 SNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHT 318 (631)
T ss_pred ccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 311 0110 0
Q ss_pred -------------------CCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCH---HHHHH
Q psy1308 150 -------------------DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNT---EVVEL 207 (607)
Q Consensus 150 -------------------d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~---~~v~~ 207 (607)
....+++.|+..|+.+++++|+++|++++..+.+ ..+.||||+|+..... +++++
T Consensus 319 v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~---g~~~TpLh~A~~n~~~~v~~Ilkl 395 (631)
T PHA02792 319 VYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN---IINIMPLFPTLSIHESDVLSILKL 395 (631)
T ss_pred ccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC---CCChhHHHHHHHhccHhHHHHHHH
Confidence 0122678888999999999999999999876543 2257999998876654 46888
Q ss_pred HHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHH
Q psy1308 208 LLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLK 267 (607)
Q Consensus 208 Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~ 267 (607)
|+++|||+|.+|..|+||||+|+..++.+++++|+++|++.. ..+..+.+++..+..
T Consensus 396 LIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN---~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 396 CKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN---ITTKYGSTCIGICVI 452 (631)
T ss_pred HHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC---CcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999876 446778888865543
No 51
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.93 E-value=6.7e-26 Score=206.45 Aligned_cols=154 Identities=46% Similarity=0.790 Sum_probs=127.4
Q ss_pred CCc-eeeeeccCCCChhHHHHHHHHHhc-cCcCCceEEeecccccc----cchhHhhhcCCCCCccCCCCchhhHHHhhC
Q psy1308 296 HPL-VFLFLGSSGIGKTELAKQLAFYIH-RDKKEAFIRLDMSEYQE----KHEVAKLIGAPPGYLGHDDGGQLTKRLKKC 369 (607)
Q Consensus 296 ~p~-~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~l~~a~~~~----~~~~~~llg~~~g~~g~~~~~~l~~~~~~~ 369 (607)
+|. +++|+||+|+|||++++.+++.++ .. ..+++.+||+.|.. ...+.+++|.+++|+++.+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~-~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~---------- 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGS-ERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG---------- 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SS-CCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCC-ccchHHHhhhcccccchHHhhhhhhhhcccceeeccch----------
Confidence 466 899999999999999999999998 55 88999999999999 88889999988888775332
Q ss_pred CCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccc
Q psy1308 370 PNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEE 438 (607)
Q Consensus 370 ~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~ 438 (607)
+|||||||||+++ .+|+.||+++|+|++++..|++++++|++||||||.+...+.......
T Consensus 70 --gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~------ 141 (171)
T PF07724_consen 70 --GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSG------ 141 (171)
T ss_dssp --TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHC------
T ss_pred --hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccc------
Confidence 3999999999999 999999999999999999999999999999999999999887643211
Q ss_pred cccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccce
Q psy1308 439 FSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEI 487 (607)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~i 487 (607)
..............+..+|+ |||++||+.+
T Consensus 142 ------------------~~~~~~~~~~~~~~~~~~f~-pEf~~Ri~~i 171 (171)
T PF07724_consen 142 ------------------EAIEQEQEEQIRDLVEYGFR-PEFLGRIDVI 171 (171)
T ss_dssp ------------------TCCHHHHCHHHHHHHHHTS--HHHHTTSSEE
T ss_pred ------------------cccHHHHHHHHHHHHHcCCC-HHHHccCCcC
Confidence 00111123334567788897 9999999864
No 52
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.93 E-value=6.1e-25 Score=222.07 Aligned_cols=226 Identities=20% Similarity=0.296 Sum_probs=184.0
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcC
Q psy1308 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~ 349 (607)
++|++.++..+...+.+.... ..++++.|++||||+.+|+.||....+. ..+|+.+||+...+......+||.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~------~~pVLI~GE~GtGK~~lAr~iH~~s~r~-~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL------DRPVLIIGERGTGKELIAARLHYLSKRW-QGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC------CCCEEEECCCCChHHHHHHHHHHhcCcc-CCCeEEEeCCCCChHHHHHHHhcc
Confidence 467888888888888777543 4578999999999999999999987765 789999999999887777889998
Q ss_pred CCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 350 PPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 350 ~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
..| |.|... ...+.++.+.+|+||||||+.+++++|..|+++++++.+...++......++++|++|+.+.....
T Consensus 74 ~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~-- 149 (329)
T TIGR02974 74 EAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALA-- 149 (329)
T ss_pred ccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHh--
Confidence 776 666432 234667888999999999999999999999999999998887776666788999999995544332
Q ss_pred HhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccce-eeeccCC--HHHHHHHHHHH
Q psy1308 429 ALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEI-VYFLPFS--KSELHTLVCRE 505 (607)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~i-v~f~pl~--~~~~~~i~~~~ 505 (607)
..+.|+ ++|++|++.+ |...||+ ++|+..++..+
T Consensus 150 ------------------------------------------~~g~fr-~dL~~rl~~~~i~lPpLReR~eDI~~L~~~f 186 (329)
T TIGR02974 150 ------------------------------------------AEGRFR-ADLLDRLAFDVITLPPLRERQEDIMLLAEHF 186 (329)
T ss_pred ------------------------------------------hcCchH-HHHHHHhcchhcCCCchhhhhhhHHHHHHHH
Confidence 134576 9999999764 5556664 68999999999
Q ss_pred HHHHHHHHhhcCCcE--EEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 506 LNFWAKKALDKHNIN--IVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 506 l~~~~~~~~~~~~i~--l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
+.++..+. +.. ..++++|++.|.. |+||+|+|+|+++|++.+..
T Consensus 187 l~~~~~~~----~~~~~~~ls~~a~~~L~~-y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 187 AIRMAREL----GLPLFPGFTPQAREQLLE-YHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred HHHHHHHh----CCCCCCCcCHHHHHHHHh-CCCCchHHHHHHHHHHHHHh
Confidence 98876654 333 5799999999996 99999999999999987764
No 53
>PHA02730 ankyrin-like protein; Provisional
Probab=99.93 E-value=7.7e-25 Score=234.00 Aligned_cols=207 Identities=12% Similarity=0.018 Sum_probs=168.1
Q ss_pred HHHhhcccCCCCCCcCCchHHHHHHhcC---ChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHH
Q psy1308 14 CILSNYFKQKPYKRGFQSSKLFYTTQST---QADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTL 90 (607)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~L 90 (607)
..+..+......++..|+||||+|+..| +.+++++|++.|+... .+|..|+|||
T Consensus 25 ~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin-----------------------~kD~~G~TPL 81 (672)
T PHA02730 25 LEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERL-----------------------CRNNEGLTPL 81 (672)
T ss_pred HHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCc-----------------------ccCCCCCChH
Confidence 3344443433567888999999999997 5999999988876544 6788999999
Q ss_pred HHHHHcC--CHHHHHHHHhcC-CCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHH-cCCCCCCC-------CCCchHHH
Q psy1308 91 FRAARYG--SAKELKTFIENS-KLDVNMRHPLGWTPLHVAAI--NGKVDNVRVLLE-AGANPNLG-------DLFNTVHR 157 (607)
Q Consensus 91 h~A~~~g--~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~-~ga~~~~~-------d~~~~l~~ 157 (607)
|+|+..+ +.++|++|+++| +++++..+..+.+|||.++. +++.++|++|+. .+++++.. .+.+|+++
T Consensus 82 h~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl 161 (672)
T PHA02730 82 GVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYV 161 (672)
T ss_pred HHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhH
Confidence 9999977 799999999997 25668888889999999988 899999999996 77888765 23569999
Q ss_pred HHHcCCccHHHHHHhcCCCccccC--CC-CcCcCCcchhhHH------HhcCCHHHHHHHHhcCCCCCccCCCCCCCCcc
Q psy1308 158 TAAEKKMNPFEVLLKREDEFNDVL--NP-NMTFLGFSALHYG------VVAGNTEVVELLLKSGADPTVKDNSGHIPSDY 228 (607)
Q Consensus 158 A~~~~~~~~~~~Ll~~g~~~~~~~--~~-~~d~~g~TpLh~A------~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~ 228 (607)
++..++.+++++|+++|++++... .. ..+..+.|.||++ ...++.+++++|+++|||+|.+|..|+||||+
T Consensus 162 ~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~ 241 (672)
T PHA02730 162 TTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQY 241 (672)
T ss_pred hcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 999999999999999999996321 11 1122234555533 45679999999999999999999999999995
Q ss_pred --hhhhhHHHHHHHHHH
Q psy1308 229 --AEDANIKQILQKYAE 243 (607)
Q Consensus 229 --A~~~~~~~~~~~ll~ 243 (607)
|+..++.+++++|++
T Consensus 242 ~~~~~~~~~eiv~~Li~ 258 (672)
T PHA02730 242 YWSCSTIDIEIVKLLIK 258 (672)
T ss_pred HHHcCcccHHHHHHHHh
Confidence 566678999999998
No 54
>KOG0502|consensus
Probab=99.92 E-value=2.1e-25 Score=198.10 Aligned_cols=213 Identities=25% Similarity=0.255 Sum_probs=178.2
Q ss_pred cCCchHHHHHHhcCChhHHHHHhcCCC-cccccccccCChHHHHHHccCc----------cchhccCCCCCHHHHHHHHc
Q psy1308 28 GFQSSKLFYTTQSTQADFKSCLSVFPK-IRQSNNTCMYNNLLFASACSLA----------LTLLECQSIKDLTLFRAARY 96 (607)
Q Consensus 28 ~~g~t~L~~A~~~g~~~~v~~L~~~~~-~~~~~~~~~~~~l~~a~~~~~~----------~~~~~~~~~g~t~Lh~A~~~ 96 (607)
..|.+-+--|...++.+++..+..... ........++..++.+.-++.. ..-+..+-.+++|+.+++..
T Consensus 60 ~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq 139 (296)
T KOG0502|consen 60 ALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ 139 (296)
T ss_pred hcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH
Confidence 345566667888889888777665432 2223344466777666544422 22356677899999999999
Q ss_pred CCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcC
Q psy1308 97 GSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKRE 174 (607)
Q Consensus 97 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g 174 (607)
.+++.+..+.+ ..+|..|..|.|||.||+..|++++|++|++.|||++.... .++|.+|+..|..+++++||.++
T Consensus 140 l~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~ 216 (296)
T KOG0502|consen 140 LHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTRE 216 (296)
T ss_pred HHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC
Confidence 99999888776 46899999999999999999999999999999999998554 56999999999999999999999
Q ss_pred CCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 175 DEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 175 ~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
.++|.. |++|.|||-||+..||.+||+.|+..|||++..+..|.+++..|...|+. +|+..+++.+.+.
T Consensus 217 vdVNvy-----DwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl 285 (296)
T KOG0502|consen 217 VDVNVY-----DWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKL 285 (296)
T ss_pred CCccee-----ccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence 999987 45599999999999999999999999999999999999999999999998 8888888887765
No 55
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.92 E-value=9.5e-25 Score=248.72 Aligned_cols=171 Identities=18% Similarity=0.172 Sum_probs=100.9
Q ss_pred CchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcC
Q psy1308 30 QSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENS 109 (607)
Q Consensus 30 g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 109 (607)
+.++||.||..|+.++++.|+..+... +..|..|.||||+||..|+.+++++|+++|
T Consensus 525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-----------------------n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g 581 (823)
T PLN03192 525 MASNLLTVASTGNAALLEELLKAKLDP-----------------------DIGDSKGRTPLHIAASKGYEDCVLVLLKHA 581 (823)
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCCC-----------------------CCCCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 345566666666666666665544322 244555666666666666666666666655
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCC
Q psy1308 110 KLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLG 189 (607)
Q Consensus 110 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g 189 (607)
+++|.+|.+|+||||+|+..|+.+++++|++.++..+..++.++||.|+..|+.+++++|+++|+++|..+. .|
T Consensus 582 -adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~-----~G 655 (823)
T PLN03192 582 -CNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH-----QG 655 (823)
T ss_pred -CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-----CC
Confidence 666666666666666666666666666666655555554455566666666666666666666666555433 26
Q ss_pred cchhhHHHhcCCHHHHHHHHhcCCCCCccCCCC-CCCCcch
Q psy1308 190 FSALHYGVVAGNTEVVELLLKSGADPTVKDNSG-HIPSDYA 229 (607)
Q Consensus 190 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g-~Tpl~~A 229 (607)
+||||+|+..|+.+++++|+++|||++..|..| .||++++
T Consensus 656 ~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~ 696 (823)
T PLN03192 656 ATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELR 696 (823)
T ss_pred CCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence 666666666666666666666666666666555 5555443
No 56
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=3e-24 Score=215.78 Aligned_cols=230 Identities=20% Similarity=0.325 Sum_probs=185.9
Q ss_pred HHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 265 RLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 265 ~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.....++|.+...+.+.+.++..... -.++++.|++|+||+.+|+.||....+....||+.+||+.|+++....
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPS------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA 148 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCC------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH
Confidence 34457899999999988888874321 347999999999999999999965544248899999999999999999
Q ss_pred hhhcCCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchH
Q psy1308 345 KLIGAPPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASN 423 (607)
Q Consensus 345 ~llg~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~ 423 (607)
+|||+.+| |+|... .-.+.++.+++|++|+|||..+|++.|..|++++|+|.++..++......++++|++|+....
T Consensus 149 eLFG~~kGaftGa~~--~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~ 226 (403)
T COG1221 149 ELFGHEKGAFTGAQG--GKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLE 226 (403)
T ss_pred HHhccccceeecccC--CcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHH
Confidence 99999988 898433 346889999999999999999999999999999999999998888888899999999995544
Q ss_pred HHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccc-ceeeeccC--CHHHHHH
Q psy1308 424 EIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRIN-EIVYFLPF--SKSELHT 500 (607)
Q Consensus 424 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~-~iv~f~pl--~~~~~~~ 500 (607)
.... .+ .+|++|+. .+|...|| +++|+..
T Consensus 227 ~~~~--------------------------------------------~g----~dl~~rl~~~~I~LPpLrER~~Di~~ 258 (403)
T COG1221 227 EAVL--------------------------------------------AG----ADLTRRLNILTITLPPLRERKEDILL 258 (403)
T ss_pred HHHH--------------------------------------------hh----cchhhhhcCceecCCChhhchhhHHH
Confidence 3211 00 37788554 45555556 5688888
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEe-CHhHHHHHHccCCCCCCccchhHHHHHHHHHH
Q psy1308 501 LVCRELNFWAKKALDKHNINIVW-DIDVETILADGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 501 i~~~~l~~~~~~~~~~~~i~l~~-~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
+++.++...++++ +..+.. +++++..|.. |+|++|+|+|++.|++.+...
T Consensus 259 L~e~Fl~~~~~~l----~~~~~~~~~~a~~~L~~-y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 259 LAEHFLKSEARRL----GLPLSVDSPEALRALLA-YDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHHHHHHHHHHc----CCCCCCCCHHHHHHHHh-CCCCCcHHHHHHHHHHHHHHh
Confidence 8999999888775 444433 3689998885 999999999999999876644
No 57
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3e-23 Score=195.92 Aligned_cols=277 Identities=21% Similarity=0.340 Sum_probs=198.9
Q ss_pred ccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCC----CCCCC---CceeeeeccCCCChhHHHHHHHHHhccCcCCceE
Q psy1308 258 RKYPLEQRLKDRIVGQESAINIISAAIKRKENGW----TDDDH---PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFI 330 (607)
Q Consensus 258 ~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~----~~~~~---p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~ 330 (607)
....+...|..+++||+.+.+.++-++..+...+ .+..- ...+++.||+|+|||.||+.||+.++ -||.
T Consensus 51 tP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln----VPFa 126 (408)
T COG1219 51 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN----VPFA 126 (408)
T ss_pred ChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC----CCee
Confidence 3445667788999999999999876664432221 11111 12689999999999999999999995 4698
Q ss_pred EeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCC-------CeEEEEecCCccC--------------HHHHHH
Q psy1308 331 RLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCP-------NAVVLFDEVDKAH--------------PDVLTV 389 (607)
Q Consensus 331 ~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~-------~~vl~lDEiek~~--------------~~~~~~ 389 (607)
.-|....++ .||+|.+....+..++.++. .|++++|||||.. ..||.+
T Consensus 127 iADATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQA 195 (408)
T COG1219 127 IADATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQA 195 (408)
T ss_pred eccccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHH
Confidence 889888764 68999888888888776654 7999999999974 239999
Q ss_pred HHHhhcccee---ecCCCc--------EEecCceEEEEecCcch-HHHHHHHhhhhhcccccccCCCCcccccCCCcchh
Q psy1308 390 LLQLFDEGRL---TDGKGK--------TIECKDAIFVMTSNLAS-NEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVT 457 (607)
Q Consensus 390 Ll~~~~~~~~---~~~~g~--------~~~~~~~~iI~tsn~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (607)
||++++ |++ ...+|+ .+|.+|.+||+...... +.+.....+.+ .+.+..+........
T Consensus 196 LLKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~---------~iGF~a~~~~~~~~~ 265 (408)
T COG1219 196 LLKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKK---------GIGFGAEVKSKSKKK 265 (408)
T ss_pred HHHHHc-CceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCC---------cccccccccchhhhh
Confidence 999998 443 334565 47899999999876544 44444322111 111111111111111
Q ss_pred cchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHH---HhhcCCcEEEeCHhHHHHHHc-
Q psy1308 458 ISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKK---ALDKHNINIVWDIDVETILAD- 533 (607)
Q Consensus 458 ~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~---~~~~~~i~l~~~~~a~~~L~~- 533 (607)
.......++..++|.++-..|||++|+..+....+|+.+++.+|+...-+.+.++ +++..+++|+++++|+..+++
T Consensus 266 ~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~ 345 (408)
T COG1219 266 EEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKK 345 (408)
T ss_pred hHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHH
Confidence 1123334445556666533599999999999999999999999997755544444 556668999999999999986
Q ss_pred cCCCCCCccchhHHHHHHHHHHHHHH
Q psy1308 534 GYDVHYGARSIKHEVERQVVSQLAAA 559 (607)
Q Consensus 534 ~~~~~~GaR~L~~~i~~~i~~~l~~~ 559 (607)
+.....|||.||..+|..+.+-+.+.
T Consensus 346 A~~rkTGARGLRsI~E~~lld~Mfel 371 (408)
T COG1219 346 AIERKTGARGLRSIIEELLLDVMFEL 371 (408)
T ss_pred HHHhccchhHHHHHHHHHHHHHHhhC
Confidence 78889999999999999999887655
No 58
>PHA02795 ankyrin-like protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=220.09 Aligned_cols=193 Identities=11% Similarity=-0.025 Sum_probs=167.3
Q ss_pred HHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCc------cCCCCCCcHHHHHHH--cCCHHHHHH
Q psy1308 67 LLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVN------MRHPLGWTPLHVAAI--NGKVDNVRV 138 (607)
Q Consensus 67 l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~------~~d~~g~tpLh~A~~--~g~~~~v~~ 138 (607)
..+.....++..++....+| +|+..+..+++++|+++| +++| .++..++|+||+|+. .|+.++|++
T Consensus 63 ~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~-~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~ 136 (437)
T PHA02795 63 VLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKN-YMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDF 136 (437)
T ss_pred HHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcc-cccchhhhhhhccccccHHHHHHHHhcCCCHHHHHH
Confidence 34445566666666666666 999999999999999999 9988 788889999999999 899999999
Q ss_pred HHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCCCcccc-CCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCc
Q psy1308 139 LLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDV-LNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTV 217 (607)
Q Consensus 139 Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 217 (607)
|+++|||++..++.||+|+|+..++.+++++|+++|++.+.. +.+..+..|.||+|.|+..++.+++++|+++|||+|.
T Consensus 137 LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~ 216 (437)
T PHA02795 137 MVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ 216 (437)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc
Confidence 999999999988899999999999999999999999853222 1111124488999999999999999999999999999
Q ss_pred cCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHh
Q psy1308 218 KDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKD 268 (607)
Q Consensus 218 ~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~ 268 (607)
+|..|+||||+|+..|+.+++++|++.|++.. ..+..|.+||+.+...
T Consensus 217 kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN---~~d~~G~TpLh~Aa~~ 264 (437)
T PHA02795 217 LDAGGRTLLYRAIYAGYIDLVSWLLENGANVN---AVMSNGYTCLDVAVDR 264 (437)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CcCCCCCCHHHHHHHc
Confidence 99999999999999999999999999999887 4567899999776654
No 59
>PHA02917 ankyrin-like protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=234.44 Aligned_cols=201 Identities=14% Similarity=0.030 Sum_probs=157.0
Q ss_pred hhHHHHHhcCCCcccccccccCChHHHHH-------------HccCccchhccCCCCCHHHHHHHHcCCHH----HHHHH
Q psy1308 43 ADFKSCLSVFPKIRQSNNTCMYNNLLFAS-------------ACSLALTLLECQSIKDLTLFRAARYGSAK----ELKTF 105 (607)
Q Consensus 43 ~~~v~~L~~~~~~~~~~~~~~~~~l~~a~-------------~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~----~v~~L 105 (607)
.+.++.|+..+......+..+.+++|.|+ ++..+...+..+..|.||||+|+..|+.+ +++.|
T Consensus 12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L 91 (661)
T PHA02917 12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL 91 (661)
T ss_pred HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence 46678787777776666778888998853 23445566778888999999999988854 55778
Q ss_pred HhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHH--HcCCccHHHHHHhcCCCccccC
Q psy1308 106 IENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTA--AEKKMNPFEVLLKREDEFNDVL 181 (607)
Q Consensus 106 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~--~~~~~~~~~~Ll~~g~~~~~~~ 181 (607)
++.+ ...|..+ ..+++|+|+..|+.++|++|+++|+|+|.+|. +||||+|+ ..|+.+++++|+++|++++..+
T Consensus 92 l~~~-~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d 168 (661)
T PHA02917 92 LEAT-GYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED 168 (661)
T ss_pred Hhcc-CCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence 7765 2244433 23677888889999999999999999999764 67999654 4689999999999999998654
Q ss_pred CCCcCcCC-----------cchhhHHHh-----------cCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHH--HH
Q psy1308 182 NPNMTFLG-----------FSALHYGVV-----------AGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIK--QI 237 (607)
Q Consensus 182 ~~~~d~~g-----------~TpLh~A~~-----------~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~--~~ 237 (607)
.. +..| .||||+|+. .++.++|++|+++|||++.+|.+|+||||+|+.+|+. ++
T Consensus 169 ~~--~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~ei 246 (661)
T PHA02917 169 ED--DEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDI 246 (661)
T ss_pred cc--cccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHH
Confidence 32 2234 599999986 4689999999999999999999999999999999874 79
Q ss_pred HHHHHHhhhhHH
Q psy1308 238 LQKYAEKYADLQ 249 (607)
Q Consensus 238 ~~~ll~~~~~~~ 249 (607)
++.|+. |++..
T Consensus 247 vk~Li~-g~d~~ 257 (661)
T PHA02917 247 VKLLMK-GIDNT 257 (661)
T ss_pred HHHHHh-CCccc
Confidence 999874 76544
No 60
>PHA02730 ankyrin-like protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=223.68 Aligned_cols=233 Identities=16% Similarity=0.140 Sum_probs=171.5
Q ss_pred hhhHHHHHhhcccCCCCCCcCCchHHHH--HHhcCChhHHHHHhcCCC----cccccccccCChHHH-------------
Q psy1308 9 RQLVLCILSNYFKQKPYKRGFQSSKLFY--TTQSTQADFKSCLSVFPK----IRQSNNTCMYNNLLF------------- 69 (607)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~L~~~~~----~~~~~~~~~~~~l~~------------- 69 (607)
.+++..++++ ....+.++..|.||||+ |+..|+.+++++|++.-. .......|..+-++-
T Consensus 215 ~eiv~lLIs~-GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (672)
T PHA02730 215 KDVIKCLIDN-NVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNV 293 (672)
T ss_pred HHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCc
Confidence 3445555544 46778899999999995 666788999999998111 101111111111100
Q ss_pred -----HHHccCc----c---chhccCCCCCH---------------------HHHHHHHcC---CHHHHHHHHhcCCCCC
Q psy1308 70 -----ASACSLA----L---TLLECQSIKDL---------------------TLFRAARYG---SAKELKTFIENSKLDV 113 (607)
Q Consensus 70 -----a~~~~~~----~---~~~~~~~~g~t---------------------~Lh~A~~~g---~~~~v~~Ll~~~~~~~ 113 (607)
-.++... . .+...+..|.+ .||.-...+ +.+++++|+++| +++
T Consensus 294 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G-AdI 372 (672)
T PHA02730 294 DMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG-ATM 372 (672)
T ss_pred chHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC-CCC
Confidence 0000000 0 01124555543 677777766 589999999999 999
Q ss_pred ccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCC--CCCCCCC--CchHHH--HHH-cC---------CccHHHHHHhc
Q psy1308 114 NMRHPLGWTPLHVAAINGK----VDNVRVLLEAGA--NPNLGDL--FNTVHR--TAA-EK---------KMNPFEVLLKR 173 (607)
Q Consensus 114 ~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~ga--~~~~~d~--~~~l~~--A~~-~~---------~~~~~~~Ll~~ 173 (607)
|.. ..|+||||+|+..++ .+++++|+++|+ ++|.+|. .||||. ++. .+ ..+++++|+.+
T Consensus 373 N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~ 451 (672)
T PHA02730 373 DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY 451 (672)
T ss_pred CcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc
Confidence 986 799999999998875 899999999998 5777654 679984 332 32 12469999999
Q ss_pred CCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCC-CCCCCCcchhhh--hHHHHHHHHHHhhhhHH
Q psy1308 174 EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDN-SGHIPSDYAEDA--NIKQILQKYAEKYADLQ 249 (607)
Q Consensus 174 g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~Tpl~~A~~~--~~~~~~~~ll~~~~~~~ 249 (607)
|++++..+.. |+||||+|+..++.+++++|+++||+++.+|. .|.||||+|+.. ++.++++.|++++++..
T Consensus 452 GADINakD~~-----G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 452 MDDIDMIDNE-----NKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE 525 (672)
T ss_pred ccchhccCCC-----CCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence 9999988555 99999999999999999999999999999997 599999999874 78999999999998765
No 61
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.91 E-value=1.7e-23 Score=222.01 Aligned_cols=225 Identities=18% Similarity=0.270 Sum_probs=182.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHH--------hccCcCCceEEeeccccccc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFY--------IHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~--------l~~~~~~~~~~l~~a~~~~~ 340 (607)
.++|++.++..+...+.+.... +.++++.|++||||+.+|+.|+.. ..+. ..||+.+||+.+++.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~s------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~-~~pfv~inCaal~e~ 292 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYARS------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKK-SHPFVAVNCGAIAES 292 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhCC------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccC-CCCeEEeecccCChh
Confidence 4899999999999888876643 347999999999999999999998 4444 789999999999988
Q ss_pred chhHhhhcCCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 341 HEVAKLIGAPPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 341 ~~~~~llg~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
...++|||+..| ++|...+ ...++++.+.+|+||||||+.+++++|..|+++++++.+...+|...-..++++|++|+
T Consensus 293 lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~ 371 (538)
T PRK15424 293 LLEAELFGYEEGAFTGSRRG-GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 371 (538)
T ss_pred hHHHHhcCCccccccCcccc-ccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecC
Confidence 888999998877 6665332 22467888999999999999999999999999999999998777766667899999999
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKS 496 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~ 496 (607)
.+.....+ .+.|+ ++|++|++.+.+..| | +++
T Consensus 372 ~~L~~~v~--------------------------------------------~g~Fr-~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 372 CDLEEDVR--------------------------------------------QGRFR-RDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred CCHHHHHh--------------------------------------------cccch-HHHHHHhcCCeecCCChhhchh
Confidence 66554322 34576 999999988766655 4 558
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHH-------HHHHccCCCCCCccchhHHHHHHHH
Q psy1308 497 ELHTLVCRELNFWAKKALDKHNINIVWDIDVE-------TILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 497 ~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~-------~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
|+..++..++.+...+. +. .++++++ +.|.. |+||+|+|+|++++++.+.
T Consensus 407 DI~~L~~~fl~~~~~~~----~~--~~~~~a~~~~~~a~~~L~~-y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 407 DILPLAESFLKQSLAAL----SA--PFSAALRQGLQQCETLLLH-YDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HHHHHHHHHHHHHHHHc----CC--CCCHHHHHhhHHHHHHHHh-CCCCchHHHHHHHHHHHHH
Confidence 99999999998765543 22 2666665 56664 9999999999999999766
No 62
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.91 E-value=1.8e-23 Score=199.97 Aligned_cols=224 Identities=20% Similarity=0.299 Sum_probs=186.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..+++++..++.+...-++...- ..++++.|.+||||..+||+-+....+. ..||..++|+...++...+++|
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~Aml------DAPLLI~GeTGTGKdLlAkaCH~~S~R~-~~pFlalNCA~lPe~~aEsElF 276 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAML------DAPLLITGETGTGKDLLAKACHLASPRH-SKPFLALNCASLPEDAAESELF 276 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhcc------CCCeEEecCCCchHHHHHHHHhhcCccc-CCCeeEeecCCCchhHhHHHHh
Confidence 46788888888776665555432 1268999999999999999999888776 8899999999999999999999
Q ss_pred cCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
|+.||..| -.++++.+++|+||+|||..++|.+|.+||.++.+|.|...++..-..-++++|+||......+.+
T Consensus 277 G~apg~~g------k~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~ 350 (511)
T COG3283 277 GHAPGDEG------KKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQ 350 (511)
T ss_pred cCCCCCCC------ccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHh
Confidence 99988333 246789999999999999999999999999999999999987766667799999999976665543
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC---CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF---SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl---~~~~~~~i~~~ 504 (607)
++.|| .++++|++....-.|. ..+++..+++.
T Consensus 351 --------------------------------------------~g~fR-eDLfyRLNVLtl~~PpLRer~~di~pL~e~ 385 (511)
T COG3283 351 --------------------------------------------KGKFR-EDLFYRLNVLTLNLPPLRERPQDIMPLAEL 385 (511)
T ss_pred --------------------------------------------cCchH-HHHHHHhheeeecCCccccCcccchHHHHH
Confidence 34576 9999999987666664 45789999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
++.+.++++.- -.-+++++.+.+|.+ |.|++|+|+|++.|-|++.
T Consensus 386 Fv~q~s~elg~---p~pkl~~~~~~~L~~-y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 386 FVQQFSDELGV---PRPKLAADLLTVLTR-YAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHhCC---CCCccCHHHHHHHHH-cCCCccHHHHHHHHHHHHH
Confidence 99988877632 256899999999997 9999999999999988654
No 63
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.91 E-value=5.9e-23 Score=223.17 Aligned_cols=227 Identities=21% Similarity=0.335 Sum_probs=185.5
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..+..+.+.+.+.... ..++++.|++||||+.+|+.||....+. ..+|+.+||+.+.+......+||
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~------~~pvli~Ge~GtGK~~lA~~ih~~s~r~-~~pfv~i~c~~~~~~~~~~~lfg 269 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARS------NSTVLLRGESGTGKELIAKAIHYLSPRA-KRPFVKVNCAALSETLLESELFG 269 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCc------CCCEEEECCCCccHHHHHHHHHHhCCCC-CCCeEEeecCCCCHHHHHHHHcC
Confidence 6899999999999888877643 4478999999999999999999988765 77999999999988777788999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+.+| +.|... ...+.++.+.+|+||||||+++++++|..|+++++++.+...++......++++|++|+.+......
T Consensus 270 ~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~ 347 (534)
T TIGR01817 270 HEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVA 347 (534)
T ss_pred CCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHH
Confidence 8776 555322 1234567788999999999999999999999999999988776665566789999999965543321
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeec-cCC--HHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL-PFS--KSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~-pl~--~~~~~~i~~~ 504 (607)
.+.|+ ++|++|++.+.+.. ||+ ++|+..|+..
T Consensus 348 --------------------------------------------~~~f~-~~L~~rl~~~~i~lPpLreR~eDi~~L~~~ 382 (534)
T TIGR01817 348 --------------------------------------------KGEFR-ADLYYRINVVPIFLPPLRERREDIPLLAEA 382 (534)
T ss_pred --------------------------------------------cCCCC-HHHHHHhcCCeeeCCCcccccccHHHHHHH
Confidence 34576 99999998865555 464 6899999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++..+..+. +..+.+++++++.|.. |+||+|+|+|+++|++.+..
T Consensus 383 ~l~~~~~~~----~~~~~~s~~a~~~L~~-~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 383 FLEKFNREN----GRPLTITPSAIRVLMS-CKWPGNVRELENCLERTATL 427 (534)
T ss_pred HHHHHHHHc----CCCCCCCHHHHHHHHh-CCCCChHHHHHHHHHHHHHh
Confidence 998876543 3346899999999996 99999999999999998764
No 64
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.91 E-value=2.1e-23 Score=221.76 Aligned_cols=226 Identities=20% Similarity=0.280 Sum_probs=185.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++.++..+...+.+.... +.++++.|++||||+.+|+.||....+. ..||+.+||+.+++....+++||
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~------~~pVLI~GE~GTGKe~lA~~IH~~S~r~-~~pfv~inC~~l~e~lleseLFG 285 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARS------DATVLILGESGTGKELVAQAIHQLSGRR-DFPFVAINCGAIAESLLEAELFG 285 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCC------CCcEEEECCCCcCHHHHHHHHHHhcCcC-CCCEEEeccccCChhHHHHHhcC
Confidence 4899999999998888776543 4579999999999999999999987665 78999999999998887889999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+..| |+|...+ ...++++.+.+|+||||||+.+++++|..|+++++++.+...++......++++|++|+.......+
T Consensus 286 ~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~ 364 (526)
T TIGR02329 286 YEEGAFTGARRG-GRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQ 364 (526)
T ss_pred Cccccccccccc-ccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhh
Confidence 9877 6665432 2356788899999999999999999999999999999998877666666788999999966554322
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~ 504 (607)
.+.|+ ++|++|++.+.+..| | .++|+..++..
T Consensus 365 --------------------------------------------~g~fr-~dL~~rL~~~~I~lPPLReR~eDI~~L~~~ 399 (526)
T TIGR02329 365 --------------------------------------------QGRFR-RDLFYRLSILRIALPPLRERPGDILPLAAE 399 (526)
T ss_pred --------------------------------------------hcchh-HHHHHhcCCcEEeCCCchhchhHHHHHHHH
Confidence 34476 999999987655555 5 55899999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHH-------HHccCCCCCCccchhHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETI-------LADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~-------L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++.++..+. + +.+++++++. |.. |+||+|+|+|++++++.+..
T Consensus 400 fl~~~~~~~----~--~~~~~~a~~~~~~~~~~L~~-y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 400 YLVQAAAAL----R--LPDSEAAAQVLAGVADPLQR-YPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHHc----C--CCCCHHHHHHhHHHHHHHHh-CCCCchHHHHHHHHHHHHHh
Confidence 998765532 2 3488998887 775 99999999999999998764
No 65
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.90 E-value=1e-22 Score=219.17 Aligned_cols=229 Identities=17% Similarity=0.252 Sum_probs=187.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..+..+...+.+.... +.++++.|++||||+.+|+.|+....+. ..+|+.+||+.+.+.....++||
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~~------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-~~p~v~v~c~~~~~~~~e~~lfG 260 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAAS------DLNVLILGETGVGKELVARAIHAASPRA-DKPLVYLNCAALPESLAESELFG 260 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhCC------CCcEEEECCCCccHHHHHHHHHHhCCcC-CCCeEEEEcccCChHHHHHHhcC
Confidence 5899999999999999887644 4589999999999999999999988765 77999999999987766778999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+..| +.|... ...+.++.+.+|+||||||+.+++++|..|+++++++.+...++......++++|++|+.......
T Consensus 261 ~~~g~~~ga~~--~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~- 337 (509)
T PRK05022 261 HVKGAFTGAIS--NRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEV- 337 (509)
T ss_pred ccccccCCCcc--cCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHH-
Confidence 8766 555422 123456788899999999999999999999999999998877666666678999999996554332
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~ 504 (607)
..+.|+ ++|++|++.+.+..| | .++|+..++.+
T Consensus 338 -------------------------------------------~~~~f~-~dL~~rl~~~~i~lPpLreR~eDI~~L~~~ 373 (509)
T PRK05022 338 -------------------------------------------RAGRFR-ADLYHRLSVFPLSVPPLRERGDDVLLLAGY 373 (509)
T ss_pred -------------------------------------------HcCCcc-HHHHhcccccEeeCCCchhchhhHHHHHHH
Confidence 234576 999999988755555 5 55899999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
++.++..++.. -.+.+++++++.|.. |+||+|+|+|+++|++.+...
T Consensus 374 fl~~~~~~~~~---~~~~~s~~a~~~L~~-y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 374 FLEQNRARLGL---RSLRLSPAAQAALLA-YDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHHHHHHHcCC---CCCCCCHHHHHHHHh-CCCCCcHHHHHHHHHHHHHhc
Confidence 99887665421 246899999999996 999999999999999987654
No 66
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.90 E-value=5.5e-23 Score=208.25 Aligned_cols=229 Identities=20% Similarity=0.262 Sum_probs=181.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|.+..+..+.+.+.+.... +.++++.|++||||+.+|+.|+....+. ..+|+.+||+.+++......+||
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~------~~pVlI~GE~GtGK~~lA~~iH~~s~r~-~~pfv~v~c~~~~~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPL------DKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLNCAALNENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHHHhCCcc-CCCeEEEeCCCCCHHHHHHHHcc
Confidence 4789999999998888877643 4579999999999999999999877654 67999999999887655678898
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
...| +.|.... ..+.++.+.+|+||||||+.+++.+|..|+.+++++.+...++......+++||+||+........
T Consensus 80 ~~~~~~~g~~~~--~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~ 157 (326)
T PRK11608 80 HEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVA 157 (326)
T ss_pred ccccccCCcccc--cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHH
Confidence 7765 4443221 235667888999999999999999999999999999988766655555789999999965544322
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccce-eeeccC--CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEI-VYFLPF--SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~i-v~f~pl--~~~~~~~i~~~ 504 (607)
.+.|+ ++|++||+.+ |...|| ..+|+..++..
T Consensus 158 --------------------------------------------~g~f~-~dL~~~l~~~~i~lPpLReR~eDI~~L~~~ 192 (326)
T PRK11608 158 --------------------------------------------EGKFR-ADLLDRLAFDVVQLPPLRERQSDIMLMAEH 192 (326)
T ss_pred --------------------------------------------cCCch-HHHHHhcCCCEEECCChhhhhhhHHHHHHH
Confidence 34576 9999999765 445556 45899999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++..+..++.. .+...++++++..|.. |+||+|+|+|++++++.+..
T Consensus 193 fl~~~~~~~~~--~~~~~~s~~al~~L~~-y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 193 FAIQMCRELGL--PLFPGFTERARETLLN-YRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHHHHHhCC--CCCCCCCHHHHHHHHh-CCCCcHHHHHHHHHHHHHHh
Confidence 99887654421 1225789999999996 99999999999999997763
No 67
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.90 E-value=1.1e-23 Score=240.16 Aligned_cols=162 Identities=22% Similarity=0.257 Sum_probs=150.0
Q ss_pred cCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHH
Q psy1308 82 CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTA 159 (607)
Q Consensus 82 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~ 159 (607)
.+..+.++||.||..|+.++++.|++.| +|+|.+|..|+||||+||..|+.+++++|+++|+++|.+|. +||||+|+
T Consensus 521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G-~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~ 599 (823)
T PLN03192 521 DDPNMASNLLTVASTGNAALLEELLKAK-LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI 599 (823)
T ss_pred CCccchhHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence 3446789999999999999999999998 99999999999999999999999999999999999999764 67999999
Q ss_pred HcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHH
Q psy1308 160 AEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239 (607)
Q Consensus 160 ~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~ 239 (607)
..|+.+++++|++.++..+. ..|.||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.++++
T Consensus 600 ~~g~~~iv~~L~~~~~~~~~-------~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~ 672 (823)
T PLN03192 600 SAKHHKIFRILYHFASISDP-------HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVR 672 (823)
T ss_pred HhCCHHHHHHHHhcCcccCc-------ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence 99999999999988876542 23789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHhh
Q psy1308 240 KYAEKYADLQRE 251 (607)
Q Consensus 240 ~ll~~~~~~~~~ 251 (607)
+|+++|++....
T Consensus 673 ~Ll~~GAdv~~~ 684 (823)
T PLN03192 673 LLIMNGADVDKA 684 (823)
T ss_pred HHHHcCCCCCCC
Confidence 999999987744
No 68
>KOG0514|consensus
Probab=99.90 E-value=4.3e-24 Score=203.45 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=146.9
Q ss_pred chhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCCCC---
Q psy1308 78 TLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAIN-----GKVDNVRVLLEAGANPNLG--- 149 (607)
Q Consensus 78 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~~v~~Ll~~ga~~~~~--- 149 (607)
.+|-.|.+|+|+||||+..+++++|+.||+.|-|++|.+|.-|+||+++|+-. .+.++|..|...| |+|++
T Consensus 260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ 338 (452)
T KOG0514|consen 260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ 338 (452)
T ss_pred HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence 34678999999999999999999999999999999999999999999998754 4678899998775 77774
Q ss_pred CCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhc-CCCCCccCCCCCCCCcc
Q psy1308 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS-GADPTVKDNSGHIPSDY 228 (607)
Q Consensus 150 d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~Tpl~~ 228 (607)
-++|+|++|+..|+.++++.||..|+|+|.+++. |.|+||+||++||.+++++||.. +||+...|.+|.|+|.+
T Consensus 339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdD-----GSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I 413 (452)
T KOG0514|consen 339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDD-----GSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI 413 (452)
T ss_pred hcchhhhhhhhcCcHHHHHHHHHccCCCccccCC-----ccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh
Confidence 5688999999999999999999999999998665 99999999999999999999985 79999999999999999
Q ss_pred hhhhhHHHHHHHHHHh
Q psy1308 229 AEDANIKQILQKYAEK 244 (607)
Q Consensus 229 A~~~~~~~~~~~ll~~ 244 (607)
|...|+.+|..+|-.+
T Consensus 414 Aleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 414 ALEAGHREIAVMLYAH 429 (452)
T ss_pred HHhcCchHHHHHHHHH
Confidence 9999999999887655
No 69
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.90 E-value=9.6e-23 Score=219.16 Aligned_cols=227 Identities=20% Similarity=0.321 Sum_probs=183.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|.+.++..+...+++.... ..+++++|++||||+.+|++++....+. ..+|+.+||+.+++......+||
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~------~~pvlI~GE~GtGK~~lA~aiH~~s~r~-~~pfv~inca~~~~~~~e~elFG 277 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAML------DAPLLITGDTGTGKDLLAYACHLRSPRG-KKPFLALNCASIPDDVVESELFG 277 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCC------CCCEEEECCCCccHHHHHHHHHHhCCCC-CCCeEEeccccCCHHHHHHHhcC
Confidence 5889999998888887766543 3468999999999999999999887664 78999999999988777788999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+.+| |.|...+ ..+.++.+.+|+||||||+.+++.+|..|+++++++.+...++......+++||++|+.....+.+
T Consensus 278 ~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~ 355 (520)
T PRK10820 278 HAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 355 (520)
T ss_pred CCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 8765 5544322 235677888999999999999999999999999999988776655556788999999966554432
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~ 504 (607)
++.|+ ++|++|++.+.+..| | +++|+..++..
T Consensus 356 --------------------------------------------~g~f~-~dL~~rL~~~~i~lPpLreR~~Di~~L~~~ 390 (520)
T PRK10820 356 --------------------------------------------KGEFR-EDLYYRLNVLTLNLPPLRDRPQDIMPLTEL 390 (520)
T ss_pred --------------------------------------------cCCcc-HHHHhhcCeeEEeCCCcccChhHHHHHHHH
Confidence 34476 999999987655555 5 45789999999
Q ss_pred HHHHHHHHHhhcCCc-EEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNI-NIVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i-~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++..+..+. +. ...++++++++|.. |+||+|+|+|+++|++.+..
T Consensus 391 fl~~~~~~~----g~~~~~ls~~a~~~L~~-y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 391 FVARFADEQ----GVPRPKLAADLNTVLTR-YGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHHHHHHc----CCCCCCcCHHHHHHHhc-CCCCCHHHHHHHHHHHHHHh
Confidence 998876643 33 35799999999996 99999999999999998764
No 70
>KOG0507|consensus
Probab=99.89 E-value=6.7e-23 Score=212.32 Aligned_cols=257 Identities=19% Similarity=0.171 Sum_probs=201.6
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHH
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELK 103 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~ 103 (607)
+-.+.+|.|+||.||.+|+.++++.|++..... .-+|..|.+|||+|+++|+.++|+
T Consensus 43 n~qd~~gfTalhha~Lng~~~is~llle~ea~l-----------------------dl~d~kg~~plhlaaw~g~~e~vk 99 (854)
T KOG0507|consen 43 NLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-----------------------DLCDTKGILPLHLAAWNGNLEIVK 99 (854)
T ss_pred cccCccchhHHHHHHhcCchHHHHHHhcchhhh-----------------------hhhhccCcceEEehhhcCcchHHH
Confidence 345778999999999999999999998764322 245688999999999999999999
Q ss_pred HHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccc--
Q psy1308 104 TFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFND-- 179 (607)
Q Consensus 104 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~-- 179 (607)
.++.++ ..+|..+..|.||||.|++.||.+++.+|+.+|+|+-.++. .|+|-.|++.|..++++.|+...-++..
T Consensus 100 mll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~ 178 (854)
T KOG0507|consen 100 MLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSL 178 (854)
T ss_pred HHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcc
Confidence 999999 88999999999999999999999999999999999999876 5699999999999999999987322211
Q ss_pred -cCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcc
Q psy1308 180 -VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERR 258 (607)
Q Consensus 180 -~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 258 (607)
......+..+-+|||+|+.+||.++++.|++.|.|+|....+| |+||.|+..|..+++..|++.|-... ..+..+
T Consensus 179 ~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h---~~n~~~ 254 (854)
T KOG0507|consen 179 RVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTH---IKNQHG 254 (854)
T ss_pred cCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccc---cccccc
Confidence 1123356678999999999999999999999999999998887 99999999999999999999987665 334555
Q ss_pred cccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHH
Q psy1308 259 KYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQL 317 (607)
Q Consensus 259 ~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~l 317 (607)
.+.|... +--|+...-.+.-+++.... .+.|+ ..+.|..+++++.+-+..
T Consensus 255 qtaldil----~d~~~~~~~ei~ga~~~~~~----~~~~l-t~inG~~~~~~~t~gq~s 304 (854)
T KOG0507|consen 255 QTALDII----IDLQENRRYEIAGAVKNFEQ----WKEPL-TIINGMRRSPRQTVGQWS 304 (854)
T ss_pred hHHHHHH----Hhcchhhhhhhhhhhhcccc----ccCcc-ceecccCCcchhhhhcCc
Confidence 5555211 11233333333333332222 23344 335677778887766543
No 71
>KOG0745|consensus
Probab=99.89 E-value=2.5e-22 Score=196.91 Aligned_cols=241 Identities=22% Similarity=0.342 Sum_probs=168.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhh-------CCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK-------CPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~-------~~~ 371 (607)
.++++||+|+|||.|++.||+.++ -||...||..++. .||+|.+-...+..++.. +..
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ld----VPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLD----VPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhC----CCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 688999999999999999999994 4699999998864 689998777777776544 457
Q ss_pred eEEEEecCCccC--------------HHHHHHHHHhhccceeecC--CC---------cEEecCceEEEEecCcch-HHH
Q psy1308 372 AVVLFDEVDKAH--------------PDVLTVLLQLFDEGRLTDG--KG---------KTIECKDAIFVMTSNLAS-NEI 425 (607)
Q Consensus 372 ~vl~lDEiek~~--------------~~~~~~Ll~~~~~~~~~~~--~g---------~~~~~~~~~iI~tsn~~~-~~i 425 (607)
|||||||+||+. ..||..||+++| |.++.. +| ..+|.+|++||+...... +.+
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~ 371 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKI 371 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHH
Confidence 999999999975 239999999998 555543 22 257999999998765433 222
Q ss_pred HHH-----HhhhhhcccccccCCCCcccccCCCcchhc-chhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 426 AQH-----ALQLRKEGEEFSKRTPSISKSQGSNLDVTI-SRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 426 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
... .++|..... +..-..+......+.... +....+.....+|-.+--.|||.+||..+++|.+|+++++.
T Consensus 372 I~rR~~d~slGFg~~s~---~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv 448 (564)
T KOG0745|consen 372 ISRRLDDKSLGFGAPSS---KGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLV 448 (564)
T ss_pred HHHhhcchhcccCCCCC---ccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHH
Confidence 221 222221110 000000000000011111 11133333334444442249999999999999999999999
Q ss_pred HHHHHHHHHHHHH---HhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHH
Q psy1308 500 TLVCRELNFWAKK---ALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAA 558 (607)
Q Consensus 500 ~i~~~~l~~~~~~---~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~ 558 (607)
+++...-+.+..+ ++...+++|.++++|++.+++ +.....|||.||..+|+++.+++.+
T Consensus 449 ~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 449 RVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 9997766655555 445567899999999999987 7889999999999999999988754
No 72
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.88 E-value=1.4e-22 Score=229.87 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=142.8
Q ss_pred CCcCCchHHH-HHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcC---CHHH
Q psy1308 26 KRGFQSSKLF-YTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYG---SAKE 101 (607)
Q Consensus 26 ~~~~g~t~L~-~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~ 101 (607)
.+..|+|||| .|+.+++.+++++|+..+. .+..|.||||.|+..+ ...+
T Consensus 48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~---------------------------~~~~G~T~Lh~A~~~~~~~v~~l 100 (743)
T TIGR00870 48 PDRLGRSALFVAAIENENLELTELLLNLSC---------------------------RGAVGDTLLHAISLEYVDAVEAI 100 (743)
T ss_pred cCccchhHHHHHHHhcChHHHHHHHHhCCC---------------------------CCCcChHHHHHHHhccHHHHHHH
Confidence 4455666666 5666666666666655432 4678999999999732 2234
Q ss_pred HHHHHhcCCC-----CCc----cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------CCchHH
Q psy1308 102 LKTFIENSKL-----DVN----MRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD----------------LFNTVH 156 (607)
Q Consensus 102 v~~Ll~~~~~-----~~~----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d----------------~~~~l~ 156 (607)
+.++...++. .++ ..+..|.||||+||..|+.++|++|+++|++++.++ +.+|||
T Consensus 101 l~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~ 180 (743)
T TIGR00870 101 LLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLN 180 (743)
T ss_pred HHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHH
Confidence 4444443311 011 123569999999999999999999999999998652 457999
Q ss_pred HHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcC---------CHHHHHHHHhcCCCC-------CccCC
Q psy1308 157 RTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAG---------NTEVVELLLKSGADP-------TVKDN 220 (607)
Q Consensus 157 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g---------~~~~v~~Ll~~gad~-------~~~d~ 220 (607)
.|+..|+.+++++|+++|++++..+. .|+||||+|+..+ ...+.+++++.+++. +..|.
T Consensus 181 ~Aa~~~~~~iv~lLl~~gadin~~d~-----~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~ 255 (743)
T TIGR00870 181 AAACLGSPSIVALLSEDPADILTADS-----LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNH 255 (743)
T ss_pred HHHHhCCHHHHHHHhcCCcchhhHhh-----hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCC
Confidence 99999999999999999999987754 4999999999987 334666777665543 77899
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHhhh
Q psy1308 221 SGHIPSDYAEDANIKQILQKYAEKYA 246 (607)
Q Consensus 221 ~g~Tpl~~A~~~~~~~~~~~ll~~~~ 246 (607)
+|.||||+|+..|+.++++.+++.+.
T Consensus 256 ~g~TPL~~A~~~g~~~l~~lLL~~~~ 281 (743)
T TIGR00870 256 QGLTPLKLAAKEGRIVLFRLKLAIKY 281 (743)
T ss_pred CCCCchhhhhhcCCccHHHHHHHHHH
Confidence 99999999999999999999998643
No 73
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.88 E-value=2.2e-21 Score=215.74 Aligned_cols=299 Identities=17% Similarity=0.217 Sum_probs=216.4
Q ss_pred HHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHH
Q psy1308 236 QILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAK 315 (607)
Q Consensus 236 ~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~ 315 (607)
..+.++++-+..... .+..........|.+...|.+.+.+.+.+.+...... .... .-.++|+||+|+|||.+++
T Consensus 293 ~yl~~~~~~pw~~~~---~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~-~~~~-g~~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 293 GYIDWMVQVPWNARS---KVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV-NKIK-GPILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred HHHHHHHhCCCCCCC---cccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc-ccCC-CceEEEECCCCCCHHHHHH
Confidence 344555555554332 1223333445567778999999999998776643321 1111 2268899999999999999
Q ss_pred HHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhC--CCeEEEEecCCccCHHH----HHH
Q psy1308 316 QLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC--PNAVVLFDEVDKAHPDV----LTV 389 (607)
Q Consensus 316 ~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~--~~~vl~lDEiek~~~~~----~~~ 389 (607)
.+++.+.. +|.+++++...+ ...+.|....|.|...|. +...+..+ .++++||||||+++++. ++.
T Consensus 368 ~ia~~l~~----~~~~i~~~~~~d---~~~i~g~~~~~~g~~~G~-~~~~l~~~~~~~~villDEidk~~~~~~g~~~~a 439 (784)
T PRK10787 368 SIAKATGR----KYVRMALGGVRD---EAEIRGHRRTYIGSMPGK-LIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASA 439 (784)
T ss_pred HHHHHhCC----CEEEEEcCCCCC---HHHhccchhccCCCCCcH-HHHHHHhcCCCCCEEEEEChhhcccccCCCHHHH
Confidence 99998854 488888776643 466777777788876554 44444443 36799999999999876 599
Q ss_pred HHHhhccc---eeecCC-CcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhh
Q psy1308 390 LLQLFDEG---RLTDGK-GKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDH 465 (607)
Q Consensus 390 Ll~~~~~~---~~~~~~-g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
|+++++.+ .+.|.- ....|+++++||+|+|.-
T Consensus 440 Llevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-------------------------------------------- 475 (784)
T PRK10787 440 LLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-------------------------------------------- 475 (784)
T ss_pred HHHHhccccEEEEecccccccccCCceEEEEcCCCC--------------------------------------------
Confidence 99999854 455542 345788999999999821
Q ss_pred hhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHH-HHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccch
Q psy1308 466 VVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN-FWAKKALDKHNINIVWDIDVETILADGYDVHYGARSI 544 (607)
Q Consensus 466 ~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~-~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L 544 (607)
.+ +|.|++|+ .++.|.|++.+++.+|+.+++. +...+. ...+..+.++++++++|+++|++..|||+|
T Consensus 476 --------~i-~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~-~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 476 --------NI-PAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERN-ALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred --------CC-CHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHh-CCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 02 38999999 5899999999999999999996 333333 334568999999999998889999999999
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCCEEEEEEecCCcccccCCCCceEEEEEeccCcccccc
Q psy1308 545 KHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVSEDSAKGGIIKLKVKKKGMKDFID 605 (607)
Q Consensus 545 ~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (607)
++.|++.+...+++.++.+.. ..++|+.++-..+++.+...........+.|...|++
T Consensus 545 eR~I~~i~r~~l~~~~~~~~~---~~v~v~~~~~~~~lg~~~~~~~~~~~~~~~G~~~gla 602 (784)
T PRK10787 545 EREISKLCRKAVKQLLLDKSL---KHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLA 602 (784)
T ss_pred HHHHHHHHHHHHHHHHhcCCC---ceeeecHHHHHHHhCCCccccchhhcCCCceEEEEeE
Confidence 999999999999988876654 4688888887777765554433333344556665554
No 74
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.88 E-value=3.8e-22 Score=182.63 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=124.9
Q ss_pred CccchhccCCCCCHHHHHHHHcCCH----HHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCC
Q psy1308 75 LALTLLECQSIKDLTLFRAARYGSA----KELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDN---VRVLLEAGANPN 147 (607)
Q Consensus 75 ~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~---v~~Ll~~ga~~~ 147 (607)
+....+..+.++.++||.||+.|+. +++++|++.+ .+++.+|..|+||||+|+..|+.++ +++|+++|+++|
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g-~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin 87 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDG-HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN 87 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc-hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence 3344456778889999999999998 5666777877 8899999999999999999988654 899999999999
Q ss_pred CCC---CCchHHHHHHcCCccHHHHHHh-cCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCC
Q psy1308 148 LGD---LFNTVHRTAAEKKMNPFEVLLK-REDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGH 223 (607)
Q Consensus 148 ~~d---~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 223 (607)
.++ ++||||+|+..++.+++++|+. .|++++..+. .|+||||+|+..++.+++++|+++|++++.++..|.
T Consensus 88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~-----~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 162 (166)
T PHA02743 88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY-----QHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL 162 (166)
T ss_pred CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence 875 4679999999999999999995 7999887644 499999999999999999999999999999998875
Q ss_pred C
Q psy1308 224 I 224 (607)
Q Consensus 224 T 224 (607)
.
T Consensus 163 ~ 163 (166)
T PHA02743 163 S 163 (166)
T ss_pred c
Confidence 3
No 75
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.88 E-value=8.7e-22 Score=218.80 Aligned_cols=224 Identities=14% Similarity=0.248 Sum_probs=180.4
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|.+.++..+...+.+.... ..++++.|++||||+.+|+.|+....+. ..+|+.+||+.++......++||
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~~------~~pvli~Ge~GtGK~~~A~~ih~~s~r~-~~pfv~vnc~~~~~~~~~~elfg 398 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAKS------SFPVLLCGEEGVGKALLAQAIHNESERA-AGPYIAVNCQLYPDEALAEEFLG 398 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhCc------CCCEEEECCCCcCHHHHHHHHHHhCCcc-CCCeEEEECCCCChHHHHHHhcC
Confidence 4788999998888877776543 3468999999999999999999988765 77999999999988766788998
Q ss_pred CCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 349 APPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
+..+. . .....+.++.+.+|+||||||+.+++++|..|+++++++.++..++......++++|+||+.+.....+
T Consensus 399 ~~~~~---~-~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~- 473 (638)
T PRK11388 399 SDRTD---S-ENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVE- 473 (638)
T ss_pred CCCcC---c-cCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHh-
Confidence 75331 1 112234567788999999999999999999999999999998877665555688999999966544322
Q ss_pred HhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHHH
Q psy1308 429 ALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCRE 505 (607)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~~ 505 (607)
.+.|+ ++|++||+.+.+..| | .++|+..++..+
T Consensus 474 -------------------------------------------~~~f~-~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~ 509 (638)
T PRK11388 474 -------------------------------------------QNRFS-RQLYYALHAFEITIPPLRMRREDIPALVNNK 509 (638)
T ss_pred -------------------------------------------cCCCh-HHHhhhhceeEEeCCChhhhhhHHHHHHHHH
Confidence 24576 999999988766555 4 447999999999
Q ss_pred HHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 506 LNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 506 l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
+.++..+. +..+.+++++++.|.. |+||+|+|+|+++|++.+.
T Consensus 510 l~~~~~~~----~~~~~~s~~a~~~L~~-y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 510 LRSLEKRF----STRLKIDDDALARLVS-YRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHHHHHHh----CCCCCcCHHHHHHHHc-CCCCChHHHHHHHHHHHHH
Confidence 98876543 3346799999999997 9999999999999998765
No 76
>KOG0502|consensus
Probab=99.88 E-value=3.6e-22 Score=177.61 Aligned_cols=236 Identities=20% Similarity=0.185 Sum_probs=192.1
Q ss_pred CCCCCCcCCchHHHHHHhcCChhHHHHHhc--------CCCcccc-cccccCChHHHHHHccCccchhccCCCCCHHHHH
Q psy1308 22 QKPYKRGFQSSKLFYTTQSTQADFKSCLSV--------FPKIRQS-NNTCMYNNLLFASACSLALTLLECQSIKDLTLFR 92 (607)
Q Consensus 22 ~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~--------~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~ 92 (607)
.+.+.++..-..++.++..|-.+.-..|.. .+..... .-..+.+.....+...........+..|++++|.
T Consensus 23 ~p~~~ns~q~a~~~~~~~m~~t~p~~~l~~~~s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v 102 (296)
T KOG0502|consen 23 LPVTMNSTQIAELFEQVEMGTTEPRCALTAEISALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLV 102 (296)
T ss_pred CCCCCChHHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhh
Confidence 455666666777888888887776555552 2221111 1233444555555666666677888899999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHh
Q psy1308 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLK 172 (607)
Q Consensus 93 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~ 172 (607)
|+-.|+...+..+|.++ +..|..+-.+++|+++++...+.+.+..|.+...+-...-+.|||+||++.|++.++++||+
T Consensus 103 ~ap~~s~~k~sttltN~-~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~ 181 (296)
T KOG0502|consen 103 AAPCGSVDKVSTTLTNG-ARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLN 181 (296)
T ss_pred cCCCCCcceeeeeeccc-ccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHH
Confidence 99999999999999998 89999999999999999999999998888876554444445779999999999999999999
Q ss_pred cCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhH
Q psy1308 173 REDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREK 252 (607)
Q Consensus 173 ~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~ 252 (607)
.|++++..... ..|+|++|+..|..++|++||.++.|+|..|.+|-|||-+|++.++.+|++.|+..|++..
T Consensus 182 ~GAdp~~lgk~-----resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--- 253 (296)
T KOG0502|consen 182 SGADPDALGKY-----RESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--- 253 (296)
T ss_pred cCCChhhhhhh-----hhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc---
Confidence 99999988554 7899999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhhcccccHHHHH
Q psy1308 253 EAEERRKYPLEQRL 266 (607)
Q Consensus 253 ~~~~~~~~~L~~~l 266 (607)
..+..|.+.+.-+.
T Consensus 254 ~e~dsGy~~mdlAV 267 (296)
T KOG0502|consen 254 QEDDSGYWIMDLAV 267 (296)
T ss_pred cccccCCcHHHHHH
Confidence 34556666654443
No 77
>PHA02792 ankyrin-like protein; Provisional
Probab=99.87 E-value=1.4e-21 Score=206.81 Aligned_cols=217 Identities=15% Similarity=0.094 Sum_probs=170.1
Q ss_pred CCCCcCCchHHHHHHhcC-------ChhHHHHHhcCCCcccccccccCChHHHHHHccCcc------------------c
Q psy1308 24 PYKRGFQSSKLFYTTQST-------QADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLAL------------------T 78 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g-------~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~------------------~ 78 (607)
+.++..|+||||+|+.++ +.+++++|++++......+.++.++++.+....... .
T Consensus 169 ~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~ 248 (631)
T PHA02792 169 DYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMN 248 (631)
T ss_pred ccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHh
Confidence 456778999999999999 899999999999998888888999999885333000 0
Q ss_pred ----------------h---------------------hccCCC-------------CCHHHHHHHHcC--CHHHHHHHH
Q psy1308 79 ----------------L---------------------LECQSI-------------KDLTLFRAARYG--SAKELKTFI 106 (607)
Q Consensus 79 ----------------~---------------------~~~~~~-------------g~t~Lh~A~~~g--~~~~v~~Ll 106 (607)
+ ...+.+ -+-.||.-..++ +.+++++|+
T Consensus 249 ~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LI 328 (631)
T PHA02792 249 ILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMI 328 (631)
T ss_pred HHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 0 000000 012255555566 678999999
Q ss_pred hcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----chHHHHHHcCCcc---HHHHHHhcCCCccc
Q psy1308 107 ENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF----NTVHRTAAEKKMN---PFEVLLKREDEFND 179 (607)
Q Consensus 107 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~----~~l~~A~~~~~~~---~~~~Ll~~g~~~~~ 179 (607)
++| ++.+ ...+..+++.||..|+.++|++|+++|||++.+|.. ||||+|+.....+ ++++|+++|+++|.
T Consensus 329 d~G-a~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~ 405 (631)
T PHA02792 329 DEG-ATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINK 405 (631)
T ss_pred HCC-Cccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccc
Confidence 999 7765 223567899999999999999999999999987753 6999877766543 58899999999998
Q ss_pred cCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhh----------hhHHHHHHHHHHhhhhH
Q psy1308 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED----------ANIKQILQKYAEKYADL 248 (607)
Q Consensus 180 ~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~----------~~~~~~~~~ll~~~~~~ 248 (607)
.+.. |+||||+|+..++.+++++|+++|++++.+|..|+||||+|+. ....++++.|++++++.
T Consensus 406 kD~~-----G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i 479 (631)
T PHA02792 406 IDKH-----GRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI 479 (631)
T ss_pred cccc-----CcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence 7554 9999999999999999999999999999999999999999975 23355666676666554
No 78
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.87 E-value=9.7e-22 Score=197.63 Aligned_cols=246 Identities=20% Similarity=0.355 Sum_probs=172.2
Q ss_pred ccHHHHHHhHhhhhHHHHHHHHHHHHHh--hCCCC----CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 260 YPLEQRLKDRIVGQESAINIISAAIKRK--ENGWT----DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 260 ~~L~~~l~~~i~Gq~~ai~~l~~~i~~~--~~~~~----~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
..+...|.+.++||+.+++.+..++... ..+.. .+..|..++|+||+|+|||++|+.|++.+. .+|+.+|
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~----~~fi~vD 82 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN----APFIKVE 82 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC----Chheeec
Confidence 3456778889999999999999888653 12222 222356899999999999999999999984 4599999
Q ss_pred cccccccc----h----hH--------------------------------hhhcCC-----------------------
Q psy1308 334 MSEYQEKH----E----VA--------------------------------KLIGAP----------------------- 350 (607)
Q Consensus 334 ~a~~~~~~----~----~~--------------------------------~llg~~----------------------- 350 (607)
++.+.+.. . +. .+++..
T Consensus 83 ~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~ 162 (443)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKK 162 (443)
T ss_pred chhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHH
Confidence 88665420 0 01 111100
Q ss_pred ----------------C-CC-ccCCCC-c-----------------------------------------------hhhH
Q psy1308 351 ----------------P-GY-LGHDDG-G-----------------------------------------------QLTK 364 (607)
Q Consensus 351 ----------------~-g~-~g~~~~-~-----------------------------------------------~l~~ 364 (607)
. +. .+...+ + ....
T Consensus 163 l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ 242 (443)
T PRK05201 163 LREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQE 242 (443)
T ss_pred HHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 0 00 000000 0 0012
Q ss_pred HHhhC-CCeEEEEecCCccC------------HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhh
Q psy1308 365 RLKKC-PNAVVLFDEVDKAH------------PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431 (607)
Q Consensus 365 ~~~~~-~~~vl~lDEiek~~------------~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~ 431 (607)
+++.+ ..||||+|||||+. ..||..||+++|...+.- .-.+++..+++||++......
T Consensus 243 ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T~~ILFI~~GAF~~~-------- 313 (443)
T PRK05201 243 AIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKTDHILFIASGAFHVS-------- 313 (443)
T ss_pred HHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEECCceeEEecCCcCCC--------
Confidence 23443 78999999999974 239999999998544443 445789999999999774210
Q ss_pred hhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHH----HHH
Q psy1308 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCR----ELN 507 (607)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~----~l~ 507 (607)
.+ ++ +- |||.+||+.++.+.||+.+++..|+.. .+.
T Consensus 314 -------------------kp-----------~D---------lI-PEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLik 353 (443)
T PRK05201 314 -------------------KP-----------SD---------LI-PELQGRFPIRVELDALTEEDFVRILTEPKASLIK 353 (443)
T ss_pred -------------------Ch-----------hh---------cc-HHHhCccceEEECCCCCHHHHHHHhcCChhHHHH
Confidence 00 11 23 999999999999999999999999954 444
Q ss_pred HHHHHHhhcCCcEEEeCHhHHHHHHc-cCC-----CCCCccchhHHHHHHHHHHHHHH
Q psy1308 508 FWAKKALDKHNINIVWDIDVETILAD-GYD-----VHYGARSIKHEVERQVVSQLAAA 559 (607)
Q Consensus 508 ~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~-----~~~GaR~L~~~i~~~i~~~l~~~ 559 (607)
.+.. +....|++|+++++|++.|++ ++. ...|||.|+.++|+.+.+...+.
T Consensus 354 Qy~~-Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~ 410 (443)
T PRK05201 354 QYQA-LLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEA 410 (443)
T ss_pred HHHH-HHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccC
Confidence 4443 344569999999999999986 554 58999999999999888876544
No 79
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.87 E-value=1.2e-21 Score=210.86 Aligned_cols=228 Identities=21% Similarity=0.312 Sum_probs=184.4
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|.+..+..+...+...... ..++++.|++|+||+.+|+.++...... ..+|+.+||+.+........+||
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~------~~~vli~Ge~GtGK~~lA~~ih~~s~~~-~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRS------SISVLINGESGTGKELVAHALHRHSPRA-KAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred cceecCHHHHHHHHHHHHHhcc------CCeEEEEeCCCCcHHHHHHHHHhcCCCC-CCCeEeeeCCCCCHHHHHHHhcC
Confidence 4778888888877777654432 3479999999999999999999987765 78999999999988777788999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+..| |.|.... ..+.++.+.+|++|||||+.+++++|..|+++++++.+...+|......+++||+||+.+.....+
T Consensus 212 ~~~g~~~~~~~~--~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 289 (469)
T PRK10923 212 HEKGAFTGANTI--RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 (469)
T ss_pred CCCCCCCCCCcC--CCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH
Confidence 8877 6664332 234577888999999999999999999999999999999887776667899999999965544322
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC---CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF---SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl---~~~~~~~i~~~ 504 (607)
.+.|+ ++|++|++.+.+..|. +++|+..++..
T Consensus 290 --------------------------------------------~~~~~-~~L~~~l~~~~i~~PpLreR~~Di~~l~~~ 324 (469)
T PRK10923 290 --------------------------------------------EGKFR-EDLFHRLNVIRVHLPPLRERREDIPRLARH 324 (469)
T ss_pred --------------------------------------------cCCch-HHHHHHhcceeecCCCcccchhhHHHHHHH
Confidence 34476 9999999877666664 56899999999
Q ss_pred HHHHHHHHHhhcCCcE-EEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~-l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
++..+..+. +.. ..+++++++.|.. |+||+|+|+|+++|++.+...
T Consensus 325 ~l~~~~~~~----~~~~~~~~~~a~~~L~~-~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 325 FLQVAAREL----GVEAKLLHPETEAALTR-LAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHHHHHc----CCCCCCcCHHHHHHHHh-CCCCChHHHHHHHHHHHHHhC
Confidence 998876543 333 4689999999996 999999999999999987643
No 80
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.6e-21 Score=201.88 Aligned_cols=303 Identities=17% Similarity=0.198 Sum_probs=225.3
Q ss_pred HHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHH
Q psy1308 235 KQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELA 314 (607)
Q Consensus 235 ~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la 314 (607)
...+..++.-+..... .++.......+.|.....|-+...+.+.+.+.-.... ..-+-..++|+||||+|||.|+
T Consensus 293 RnYlDwll~lPW~~~s---k~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~--~~~kGpILcLVGPPGVGKTSLg 367 (782)
T COG0466 293 RNYLDWLLDLPWGKRS---KDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT--KKLKGPILCLVGPPGVGKTSLG 367 (782)
T ss_pred HHHHHHHHhCCCcccc---chhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh--ccCCCcEEEEECCCCCCchhHH
Confidence 3444555555554332 2333334445567777889999999988877544322 1112236899999999999999
Q ss_pred HHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCC--CeEEEEecCCccCHHHH----H
Q psy1308 315 KQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCP--NAVVLFDEVDKAHPDVL----T 388 (607)
Q Consensus 315 ~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~--~~vl~lDEiek~~~~~~----~ 388 (607)
+.||+.+++. |+++......+ ++++-|+...|+|+..|..+. .+.++. +.+++||||||+..+.+ .
T Consensus 368 kSIA~al~Rk----fvR~sLGGvrD---EAEIRGHRRTYIGamPGrIiQ-~mkka~~~NPv~LLDEIDKm~ss~rGDPaS 439 (782)
T COG0466 368 KSIAKALGRK----FVRISLGGVRD---EAEIRGHRRTYIGAMPGKIIQ-GMKKAGVKNPVFLLDEIDKMGSSFRGDPAS 439 (782)
T ss_pred HHHHHHhCCC----EEEEecCcccc---HHHhccccccccccCChHHHH-HHHHhCCcCCeEEeechhhccCCCCCChHH
Confidence 9999999776 99999988755 678889999999987775554 444443 88999999999976644 7
Q ss_pred HHHHhhc---cceeecC-CCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhh
Q psy1308 389 VLLQLFD---EGRLTDG-KGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKD 464 (607)
Q Consensus 389 ~Ll~~~~---~~~~~~~-~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
+||.++| +..|.|. -....|.++++||+|+|.- +
T Consensus 440 ALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl-~----------------------------------------- 477 (782)
T COG0466 440 ALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL-D----------------------------------------- 477 (782)
T ss_pred HHHhhcCHhhcCchhhccccCccchhheEEEeecCcc-c-----------------------------------------
Confidence 8999997 6667764 3566899999999999921 0
Q ss_pred hhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccch
Q psy1308 465 HVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSI 544 (607)
Q Consensus 465 ~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L 544 (607)
.. +..|+.|+ ++|....++.+|-.+|+.++|-.-+-+-.....-.+.++++|+..|.+.|..+.|+|.|
T Consensus 478 ---------tI-P~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~L 546 (782)
T COG0466 478 ---------TI-PAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNL 546 (782)
T ss_pred ---------cC-ChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHH
Confidence 01 37799999 78899999999999999999875443322222347999999999998789999999999
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCCEEEEEEecCCcccccCCCCceEEEEEeccCccccccc
Q psy1308 545 KHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVSEDSAKGGIIKLKVKKKGMKDFIDV 606 (607)
Q Consensus 545 ~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (607)
++.|.+.+.... ..++.++.. ..+.|+..+-..+++.+.+......+..+.|.+.|+|.
T Consensus 547 eR~i~ki~RK~~-~~i~~~~~k--~~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAW 605 (782)
T COG0466 547 EREIAKICRKAA-KKILLKKEK--SIVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAW 605 (782)
T ss_pred HHHHHHHHHHHH-HHHHhcCcc--cceeeCHHHHHHHhCCcccCccccccCCCCeeEeeeee
Confidence 999998666555 455554332 22678888888999888888777888888888888764
No 81
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.87 E-value=4.4e-21 Score=215.83 Aligned_cols=285 Identities=19% Similarity=0.229 Sum_probs=200.2
Q ss_pred ccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 258 RKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 258 ~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
....+.+.+...++|++.+++.+...+....... .. ++.+++|+||+|+|||.+++.+++.+.. +|++++++..
T Consensus 310 ~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-~~-~~~~lll~GppG~GKT~lAk~iA~~l~~----~~~~i~~~~~ 383 (775)
T TIGR00763 310 DLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG-KM-KGPILCLVGPPGVGKTSLGKSIAKALNR----KFVRFSLGGV 383 (775)
T ss_pred hHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CC-CCceEEEECCCCCCHHHHHHHHHHHhcC----CeEEEeCCCc
Confidence 3445667788889999999999988665443211 11 2237999999999999999999999854 4889988765
Q ss_pred cccchhHhhhcCCCCCccCCCCchhhHHHhhC--CCeEEEEecCCccCHHH----HHHHHHhhcc---ceeecC-CCcEE
Q psy1308 338 QEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC--PNAVVLFDEVDKAHPDV----LTVLLQLFDE---GRLTDG-KGKTI 407 (607)
Q Consensus 338 ~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~--~~~vl~lDEiek~~~~~----~~~Ll~~~~~---~~~~~~-~g~~~ 407 (607)
.+ ...+.|....|+|...+. +...+..+ ..+|+||||||++++.. .+.|+++++. +.+.|. -+..+
T Consensus 384 ~~---~~~i~g~~~~~~g~~~g~-i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~ 459 (775)
T TIGR00763 384 RD---EAEIRGHRRTYVGAMPGR-IIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPF 459 (775)
T ss_pred cc---HHHHcCCCCceeCCCCch-HHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCcee
Confidence 33 456677777788875543 33444432 35699999999997653 4889999984 667765 36778
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccce
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEI 487 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~i 487 (607)
++++++||+|||.. ..+. |+|++|+ .+
T Consensus 460 d~s~v~~I~TtN~~---------------------------------------------------~~i~-~~L~~R~-~v 486 (775)
T TIGR00763 460 DLSKVIFIATANSI---------------------------------------------------DTIP-RPLLDRM-EV 486 (775)
T ss_pred ccCCEEEEEecCCc---------------------------------------------------hhCC-HHHhCCe-eE
Confidence 99999999999931 1133 8999999 57
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHHhccCCC
Q psy1308 488 VYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGK 567 (607)
Q Consensus 488 v~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~ 567 (607)
+.|.|++.++..+|+..++.....+........+.++++++.+|+++|+...|+|.|++.|++.+.....+.+..+....
T Consensus 487 i~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~ 566 (775)
T TIGR00763 487 IELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKK 566 (775)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCccc
Confidence 89999999999999998886422221111123689999999999888999999999999999988777444433355443
Q ss_pred CC--EEEEEEecCCcccccCCCCceEEEEEeccCcccccc
Q psy1308 568 GS--FVRLYVQWSKEVSEDSAKGGIIKLKVKKKGMKDFID 605 (607)
Q Consensus 568 ~~--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (607)
+. .+.|+.++-..+++.+.+......+..+.|.+.|++
T Consensus 567 ~~~~~v~i~~~~~~~~lg~~~~~~~~~~~~~~~G~v~gla 606 (775)
T TIGR00763 567 SEAESVVITPDNLKKYLGKPVFTYERAYEVTPPGVVMGLA 606 (775)
T ss_pred CCcccccCCHHHHHHhcCccccccchhccCCCCeEEEEEE
Confidence 33 355555555666655544433333333445555544
No 82
>KOG0505|consensus
Probab=99.87 E-value=1e-21 Score=197.29 Aligned_cols=189 Identities=24% Similarity=0.261 Sum_probs=145.7
Q ss_pred HHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy1308 34 LFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDV 113 (607)
Q Consensus 34 L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 113 (607)
+.-||..|..+=+..|+..+... +..+.+|.|+||.||...+.+||++|++.+ +++
T Consensus 44 ~l~A~~~~d~~ev~~ll~~ga~~-----------------------~~~n~DglTalhq~~id~~~e~v~~l~e~g-a~V 99 (527)
T KOG0505|consen 44 FLEACSRGDLEEVRKLLNRGASP-----------------------NLCNVDGLTALHQACIDDNLEMVKFLVENG-ANV 99 (527)
T ss_pred HHhccccccHHHHHHHhccCCCc-----------------------cccCCccchhHHHHHhcccHHHHHHHHHhc-CCc
Confidence 66788899999999998887332 367789999999999999999999999999 999
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--ch------------HHHHHHcCCcc--------------
Q psy1308 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF--NT------------VHRTAAEKKMN-------------- 165 (607)
Q Consensus 114 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~--~~------------l~~A~~~~~~~-------------- 165 (607)
|..|..||||||.|+..||..++++|+.+|+++-..+.. .| +-.+...-.++
T Consensus 100 n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~ 179 (527)
T KOG0505|consen 100 NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD 179 (527)
T ss_pred cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999987654431 12 11111111111
Q ss_pred HHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 166 PFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 166 ~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
=+...+..|...+.... .|.|.||.|+.+|..++..+|+++|.+++++|.+||||||.|+..|..+++++|+.++
T Consensus 180 D~~q~l~~G~~~d~~~~-----rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g 254 (527)
T KOG0505|consen 180 DARQWLNAGAELDARHA-----RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG 254 (527)
T ss_pred HHHHHHhcccccccccc-----ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhh
Confidence 11222335555544422 2888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHhh
Q psy1308 246 ADLQRE 251 (607)
Q Consensus 246 ~~~~~~ 251 (607)
++....
T Consensus 255 a~~d~~ 260 (527)
T KOG0505|consen 255 ADMDAK 260 (527)
T ss_pred cccchh
Confidence 877644
No 83
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.87 E-value=6.5e-21 Score=212.97 Aligned_cols=227 Identities=19% Similarity=0.299 Sum_probs=183.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..+..+...+...... ..++++.|++||||+.+|+.|+...... ..+|+.+||+.+........+||
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~------~~pVLI~GE~GTGK~~lA~~ih~~s~r~-~~~~v~i~c~~~~~~~~~~~lfg 449 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQS------DSTVLILGETGTGKELIARAIHNLSGRN-NRRMVKMNCAAMPAGLLESDLFG 449 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCC------CCCEEEECCCCcCHHHHHHHHHHhcCCC-CCCeEEEecccCChhHhhhhhcC
Confidence 5889999999998888776543 3479999999999999999999988665 77999999999987666778999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
...| +.|... ...+.++.+.+|+||||||+.+++++|..|+.+++++.+...++......++++|++|+.+......
T Consensus 450 ~~~~~~~g~~~--~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~ 527 (686)
T PRK15429 450 HERGAFTGASA--QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 527 (686)
T ss_pred ccccccccccc--chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHH
Confidence 7665 444221 2235577888999999999999999999999999999988877666666789999999966544322
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~ 504 (607)
.+.|+ ++|++|++.+.+..| | .++|+..++..
T Consensus 528 --------------------------------------------~~~f~-~~L~~~l~~~~i~lPpLreR~~Di~~L~~~ 562 (686)
T PRK15429 528 --------------------------------------------DREFR-SDLYYRLNVFPIHLPPLRERPEDIPLLVKA 562 (686)
T ss_pred --------------------------------------------cCccc-HHHHhccCeeEEeCCChhhhHhHHHHHHHH
Confidence 34576 999999988755555 5 55899999999
Q ss_pred HHHHHHHHHhhcCCcEE-EeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l-~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++.++..+. +..+ .+++++++.|.. |+||+|+|+|+++|++.+..
T Consensus 563 ~l~~~~~~~----~~~~~~~s~~al~~L~~-y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 563 FTFKIARRM----GRNIDSIPAETLRTLSN-MEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHHHHc----CCCCCCcCHHHHHHHHh-CCCCCcHHHHHHHHHHHHHh
Confidence 998876654 3334 689999999996 99999999999999998763
No 84
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.86 E-value=2.4e-21 Score=176.03 Aligned_cols=148 Identities=21% Similarity=0.379 Sum_probs=118.6
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcC
Q psy1308 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~ 349 (607)
++|.+.++..+.+.+++.... |.++++.|++||||+.+|+.||+...+. +.||+.+||+.++......+|||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~------~~pVlI~GE~GtGK~~lA~~IH~~s~r~-~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS------DLPVLITGETGTGKELLARAIHNNSPRK-NGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS------TS-EEEECSTTSSHHHHHHHHHHCSTTT-TS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC------CCCEEEEcCCCCcHHHHHHHHHHhhhcc-cCCeEEEehhhhhcchhhhhhhcc
Confidence 468888999998888877644 5689999999999999999999987765 789999999999988888999998
Q ss_pred CCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHH
Q psy1308 350 PPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426 (607)
Q Consensus 350 ~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~ 426 (607)
..| +.|... ...++++.+.+|+||||||+.+++++|..|+++++++++...++......+++||++|+.+.++..
T Consensus 74 ~~~~~~~~~~--~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v 149 (168)
T PF00158_consen 74 EKGAFTGARS--DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELV 149 (168)
T ss_dssp CSSSSTTTSS--EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHH
T ss_pred cccccccccc--ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHH
Confidence 776 444322 234889999999999999999999999999999999999988776666789999999996655543
No 85
>PHA02741 hypothetical protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=178.28 Aligned_cols=132 Identities=23% Similarity=0.249 Sum_probs=92.1
Q ss_pred hccCCCCCHHHHHHHHcCCHHHHHHHHhcC-----CCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Q psy1308 80 LECQSIKDLTLFRAARYGSAKELKTFIENS-----KLDVNMRHPLGWTPLHVAAINGK----VDNVRVLLEAGANPNLGD 150 (607)
Q Consensus 80 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-----~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~ga~~~~~d 150 (607)
+..+..|.||||+||..|+.++++.|+... +++++.+|..|+||||+|+..|+ .+++++|+++|++++.++
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 456778888999999999988888875421 26788888888899998888888 477788888887777643
Q ss_pred CCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHh-cCCCCCccCCCCCCCCcch
Q psy1308 151 LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLK-SGADPTVKDNSGHIPSDYA 229 (607)
Q Consensus 151 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~Tpl~~A 229 (607)
. ..|+||||+|+..++.+++++|++ .|++++..|..|+||||+|
T Consensus 95 ~-----------------------------------~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A 139 (169)
T PHA02741 95 M-----------------------------------LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELA 139 (169)
T ss_pred c-----------------------------------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHH
Confidence 1 026666666666666666666665 3666666666666666666
Q ss_pred hhhhHHHHHHHHHHhhh
Q psy1308 230 EDANIKQILQKYAEKYA 246 (607)
Q Consensus 230 ~~~~~~~~~~~ll~~~~ 246 (607)
+..++.++++.|++.++
T Consensus 140 ~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 140 IDNEDVAMMQILREIVA 156 (169)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666655543
No 86
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.86 E-value=5.2e-21 Score=217.02 Aligned_cols=212 Identities=17% Similarity=0.108 Sum_probs=162.8
Q ss_pred cCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHH-HHHHcCCHHHHHHHH
Q psy1308 28 GFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLF-RAARYGSAKELKTFI 106 (607)
Q Consensus 28 ~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll 106 (607)
..+..+++.||+.|+.+.++.++..+.. ...+..|..|.|||| .|+.+++.+++++|+
T Consensus 15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~---------------------~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl 73 (743)
T TIGR00870 15 SDEEKAFLPAAERGDLASVYRDLEEPKK---------------------LNINCPDRLGRSALFVAAIENENLELTELLL 73 (743)
T ss_pred CHHHHHHHHHHHcCCHHHHHHHhccccc---------------------cCCCCcCccchhHHHHHHHhcChHHHHHHHH
Confidence 4467899999999999999999876431 122457789999999 889999999999999
Q ss_pred hcCCCCCccCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCC------CC------CCCCCchHHHHHHcCCccHHHHHH
Q psy1308 107 ENSKLDVNMRHPLGWTPLHVAAING---KVDNVRVLLEAGAN------PN------LGDLFNTVHRTAAEKKMNPFEVLL 171 (607)
Q Consensus 107 ~~~~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~ga~------~~------~~d~~~~l~~A~~~~~~~~~~~Ll 171 (607)
+.+ + ++..|.||||.|+..+ ...++.++...+.+ ++ ...+.||||+|+..|+.+++++|+
T Consensus 74 ~~g-~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL 148 (743)
T TIGR00870 74 NLS-C----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLL 148 (743)
T ss_pred hCC-C----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHH
Confidence 988 4 6788999999999732 23344455544432 11 124678999999999999999999
Q ss_pred hcCCCccccCCC---------CcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh---------
Q psy1308 172 KREDEFNDVLNP---------NMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN--------- 233 (607)
Q Consensus 172 ~~g~~~~~~~~~---------~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~--------- 233 (607)
++|++++..... .....|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus 149 ~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l 228 (743)
T TIGR00870 149 ERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEEL 228 (743)
T ss_pred hCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHH
Confidence 999999865321 11246999999999999999999999999999999999999999999875
Q ss_pred HHHHHHHHHHhhhhHHhh----HHHhhcccccHHHH
Q psy1308 234 IKQILQKYAEKYADLQRE----KEAEERRKYPLEQR 265 (607)
Q Consensus 234 ~~~~~~~ll~~~~~~~~~----~~~~~~~~~~L~~~ 265 (607)
...+.+.++..++..... ...+..+.+||..+
T Consensus 229 ~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A 264 (743)
T TIGR00870 229 SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLA 264 (743)
T ss_pred HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhh
Confidence 334555555554443221 33467788998544
No 87
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.86 E-value=8.5e-21 Score=190.78 Aligned_cols=246 Identities=21% Similarity=0.372 Sum_probs=171.3
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhCC------CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKENG------WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~------~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
.+...|.++++||+.+++.+..++..++.. ......|-.++++||+|+|||.+++.++..+. .+|+.+|+
T Consensus 5 ~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~----~~fi~vda 80 (441)
T TIGR00390 5 EIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN----APFIKVEA 80 (441)
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC----CeEEEeec
Confidence 456778889999999999999888754221 12233456899999999999999999999984 45899987
Q ss_pred ccccc-----cc--h-hHhh--------------------------------hcCCCCCccC------------------
Q psy1308 335 SEYQE-----KH--E-VAKL--------------------------------IGAPPGYLGH------------------ 356 (607)
Q Consensus 335 a~~~~-----~~--~-~~~l--------------------------------lg~~~g~~g~------------------ 356 (607)
+.+.+ .. . +..+ +.....+.|.
T Consensus 81 t~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l 160 (441)
T TIGR00390 81 TKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKL 160 (441)
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHH
Confidence 75532 10 1 1111 1100001000
Q ss_pred --------------------------CCC----c-h-----------------------------------------hhH
Q psy1308 357 --------------------------DDG----G-Q-----------------------------------------LTK 364 (607)
Q Consensus 357 --------------------------~~~----~-~-----------------------------------------l~~ 364 (607)
..+ + . ..+
T Consensus 161 ~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~ 240 (441)
T TIGR00390 161 REGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQE 240 (441)
T ss_pred hcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 000 0 0 001
Q ss_pred HHhh-CCCeEEEEecCCccCH------------HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhh
Q psy1308 365 RLKK-CPNAVVLFDEVDKAHP------------DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431 (607)
Q Consensus 365 ~~~~-~~~~vl~lDEiek~~~------------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~ 431 (607)
+++. ...||||+|||||+.. .||..||+++|...+.- +...++..+++||++......
T Consensus 241 a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T~~ILFI~~GAF~~~-------- 311 (441)
T TIGR00390 241 AIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKTDHILFIAAGAFQLA-------- 311 (441)
T ss_pred HHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEECCceeEEecCCcCCC--------
Confidence 1222 5689999999999743 29999999998555444 445789999999999773210
Q ss_pred hhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHH--
Q psy1308 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFW-- 509 (607)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~-- 509 (607)
.+ .+ +- |||.+||+.++.+.||+.+++..|+...-+.+
T Consensus 312 -------------------kp-----------~D---------lI-PEl~GR~Pi~v~L~~L~~edL~rILteP~nsLik 351 (441)
T TIGR00390 312 -------------------KP-----------SD---------LI-PELQGRFPIRVELQALTTDDFERILTEPKNSLIK 351 (441)
T ss_pred -------------------Ch-----------hh---------cc-HHHhCccceEEECCCCCHHHHHHHhcCChhHHHH
Confidence 00 01 23 99999999999999999999999995433333
Q ss_pred -HHHHhhcCCcEEEeCHhHHHHHHc-cCC-----CCCCccchhHHHHHHHHHHHHHH
Q psy1308 510 -AKKALDKHNINIVWDIDVETILAD-GYD-----VHYGARSIKHEVERQVVSQLAAA 559 (607)
Q Consensus 510 -~~~~~~~~~i~l~~~~~a~~~L~~-~~~-----~~~GaR~L~~~i~~~i~~~l~~~ 559 (607)
.+.+....|++|.++++|++.|++ ++. ...|||.|+.++|+.+.+...+.
T Consensus 352 Qy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 352 QYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEA 408 (441)
T ss_pred HHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC
Confidence 333446679999999999999986 554 68999999999999888776543
No 88
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.86 E-value=2e-21 Score=201.65 Aligned_cols=218 Identities=20% Similarity=0.291 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCC
Q psy1308 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP 351 (607)
Q Consensus 272 Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~ 351 (607)
+.+..+..+...+.+.... ..++++.|.+|+||..++|.+++... . ..+|+.++|+.+.+....++|||+.+
T Consensus 317 ~~d~s~a~l~rk~~rv~~~------~~pvll~GEtGtGKe~laraiH~~s~-~-~gpfvAvNCaAip~~liesELFGy~~ 388 (606)
T COG3284 317 LLDPSRATLLRKAERVAAT------DLPVLLQGETGTGKEVLARAIHQNSE-A-AGPFVAVNCAAIPEALIESELFGYVA 388 (606)
T ss_pred ccCHHHHHHHHHHHHHhhc------CCCeEecCCcchhHHHHHHHHHhccc-c-cCCeEEEEeccchHHhhhHHHhccCc
Confidence 4555555555555554432 34789999999999999999999887 3 88999999999999999999999988
Q ss_pred C-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHh
Q psy1308 352 G-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHAL 430 (607)
Q Consensus 352 g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~ 430 (607)
| ++|....|. .+.++.+++|++|+|||+.+|-+.|..||+++++|.++..+|.. ..-++.+|.+|+.+-..+++
T Consensus 389 GafTga~~kG~-~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~--- 463 (606)
T COG3284 389 GAFTGARRKGY-KGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVE--- 463 (606)
T ss_pred cccccchhccc-cccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHH---
Confidence 8 888766665 56789999999999999999999999999999999999999888 67789999999977776654
Q ss_pred hhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC--CHHHHHHHHHHHHHH
Q psy1308 431 QLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF--SKSELHTLVCRELNF 508 (607)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl--~~~~~~~i~~~~l~~ 508 (607)
++.|+ .+||||++..++..|. .+.|-...+.+.+.+
T Consensus 464 -----------------------------------------~g~fr-edLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~ 501 (606)
T COG3284 464 -----------------------------------------QGRFR-EDLYYRLNAFVITLPPLRERSDRIPLLDRILKR 501 (606)
T ss_pred -----------------------------------------cCCch-HHHHHHhcCeeeccCchhcccccHHHHHHHHHH
Confidence 34587 9999999987776664 223333333333322
Q ss_pred HHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 509 WAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 509 ~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
.....+.++++++..|.. |.||+|.|+|.++|++..
T Consensus 502 -------~~~~~~~l~~~~~~~l~~-~~WPGNirel~~v~~~~~ 537 (606)
T COG3284 502 -------ENDWRLQLDDDALARLLA-YRWPGNIRELDNVIERLA 537 (606)
T ss_pred -------ccCCCccCCHHHHHHHHh-CCCCCcHHHHHHHHHHHH
Confidence 123468899999999985 999999999999998743
No 89
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=185.89 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=131.7
Q ss_pred hhccCCCCCHH-HHHHHHcCCHHHHHHHHhcCCCCCccCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---
Q psy1308 79 LLECQSIKDLT-LFRAARYGSAKELKTFIENSKLDVNMRH----PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD--- 150 (607)
Q Consensus 79 ~~~~~~~g~t~-Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d----~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--- 150 (607)
+..+|..|.|+ ||.|+..|+.+++++|+++| +++|.++ ..|.||||+|+..++.+++++|+++|||+|..+
T Consensus 25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~G-AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~ 103 (300)
T PHA02884 25 IKKKNKICIANILYSSIKFHYTDIIDAILKLG-ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEA 103 (300)
T ss_pred hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCC-CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCC
Confidence 34667777665 66677779999999999999 9999974 589999999999999999999999999999853
Q ss_pred CCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchh
Q psy1308 151 LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230 (607)
Q Consensus 151 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~ 230 (607)
+.||||+|+..++.+++++|+.+|++++..+.. |+||||+|+..++.+++..+. |+. .+..+.+|++++
T Consensus 104 g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~-----G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~- 172 (300)
T PHA02884 104 KITPLYISVLHGCLKCLEILLSYGADINIQTND-----MVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL- 172 (300)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-----CCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh-
Confidence 578999999999999999999999999987544 999999999999999886664 332 466777888875
Q ss_pred hhhHHHHHHHHHHhhhh
Q psy1308 231 DANIKQILQKYAEKYAD 247 (607)
Q Consensus 231 ~~~~~~~~~~ll~~~~~ 247 (607)
++.++++.|+++..-
T Consensus 173 --~n~ei~~~Lish~vl 187 (300)
T PHA02884 173 --INFDILKILVSHFIL 187 (300)
T ss_pred --ccHHHHHHHHHHHHH
Confidence 368899999998873
No 90
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.85 E-value=2.4e-20 Score=199.56 Aligned_cols=227 Identities=20% Similarity=0.300 Sum_probs=179.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|.+..++.+...+...... ..++++.|++|+||+.+|+.++...... ..+|+.++|+.+.+......+||
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~------~~~vli~Ge~GtGK~~lA~~ih~~s~~~-~~~~v~v~c~~~~~~~~~~~lfg 212 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPS------DITVLLLGESGTGKEVLARALHQLSDRK-DKRFVAINCAAIPENLLESELFG 212 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCC------CCCEEEECCCCcCHHHHHHHHHHhCCcC-CCCeEEEECCCCChHHHHHHhcC
Confidence 3677788888777766654321 2357899999999999999999887654 67899999999988777788999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
...| |.|... ...+.++.+.+|+||||||+.+++.+|..|+++++++.+...++......++++|+||+.+......
T Consensus 213 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 290 (445)
T TIGR02915 213 YEKGAFTGAVK--QTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA 290 (445)
T ss_pred CCCCCcCCCcc--CCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH
Confidence 8766 554322 2345677888999999999999999999999999999988776666666789999999966554322
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~ 504 (607)
.+.|+ ++|++|++.+.+..| | .++|+..++..
T Consensus 291 --------------------------------------------~~~~~-~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~ 325 (445)
T TIGR02915 291 --------------------------------------------EGTFR-EDLFYRIAEISITIPPLRSRDGDAVLLANA 325 (445)
T ss_pred --------------------------------------------cCCcc-HHHHHHhccceecCCCchhchhhHHHHHHH
Confidence 24476 999999987655555 4 55899999999
Q ss_pred HHHHHHHHHhhcCCc-EEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNI-NIVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i-~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++.++..+. +. ...+++++++.|.. |+||+|+|+|+++|++.+..
T Consensus 326 ~l~~~~~~~----~~~~~~~~~~a~~~L~~-~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 326 FLERFAREL----KRKTKGFTDDALRALEA-HAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHHHHHHHh----CCCCCCCCHHHHHHHHh-CCCCChHHHHHHHHHHHHHh
Confidence 998876644 32 35789999999996 99999999999999998764
No 91
>KOG0512|consensus
Probab=99.85 E-value=6.6e-21 Score=163.42 Aligned_cols=144 Identities=26% Similarity=0.338 Sum_probs=128.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCchHHHHHHcCCcc
Q psy1308 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG--DLFNTVHRTAAEKKMN 165 (607)
Q Consensus 88 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~--d~~~~l~~A~~~~~~~ 165 (607)
-.+.+|+..+.+..|+.||+...-.+|.+|.+|+||||-|+++||.+||+.|+..||+++++ ++|||||.||..++.+
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~ 144 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE 144 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence 45889999999999999999885679999999999999999999999999999999999985 4699999999999999
Q ss_pred HHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCH-HHHHHHH-hcCCCCCccCCCCCCCCcchhhhhHHH
Q psy1308 166 PFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNT-EVVELLL-KSGADPTVKDNSGHIPSDYAEDANIKQ 236 (607)
Q Consensus 166 ~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~-~~v~~Ll-~~gad~~~~d~~g~Tpl~~A~~~~~~~ 236 (607)
++-.||++|+|+|+..+. -+||||+||...+. ..+.+|+ +.+.++-.+++.+.||+.+|..-+...
T Consensus 145 va~~LLqhgaDVnA~t~g-----~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~ 212 (228)
T KOG0512|consen 145 VAGRLLQHGADVNAQTKG-----LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSH 212 (228)
T ss_pred HHHHHHhccCcccccccc-----cchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhH
Confidence 999999999999998665 79999999987654 4556655 468999999999999999998765543
No 92
>KOG0514|consensus
Probab=99.84 E-value=9.2e-21 Score=180.83 Aligned_cols=159 Identities=21% Similarity=0.209 Sum_probs=135.1
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHc-----CC
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARY-----GS 98 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~ 98 (607)
|..|+.|||+||||+.++|.++|+.|+..+...- +.++.-|.||+++|+.. .+
T Consensus 262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~V----------------------D~qNrAGYtpiMLaALA~lk~~~d 319 (452)
T KOG0514|consen 262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDV----------------------DQQNRAGYTPVMLAALAKLKQPAD 319 (452)
T ss_pred hhhcCCCCeeeeeeecccchHHHHHHhccCcccc----------------------cccccccccHHHHHHHHhhcchhh
Confidence 5578899999999999999999999987764322 46677889999988865 46
Q ss_pred HHHHHHHHhcCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhc-C
Q psy1308 99 AKELKTFIENSKLDVNMRHP-LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKR-E 174 (607)
Q Consensus 99 ~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~-g 174 (607)
..+|..|+.-| |+|++-. .|.|+|++|+..|+.++|+.||.+|||+|.+|. .|+|+.||..||.+++++||.. +
T Consensus 320 ~~vV~~LF~mg--nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~ 397 (452)
T KOG0514|consen 320 RTVVERLFKMG--DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS 397 (452)
T ss_pred HHHHHHHHhcc--CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCc
Confidence 88999999987 7888754 599999999999999999999999999999775 5699999999999999999964 4
Q ss_pred CCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhc
Q psy1308 175 DEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS 211 (607)
Q Consensus 175 ~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 211 (607)
+++... |.+|.|+|++|...||.+|.-+|-.+
T Consensus 398 cd~sLt-----D~DgSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 398 CDISLT-----DVDGSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred ccceee-----cCCCchhhhhHHhcCchHHHHHHHHH
Confidence 444443 56699999999999999998888654
No 93
>KOG0505|consensus
Probab=99.83 E-value=2.5e-20 Score=187.39 Aligned_cols=201 Identities=19% Similarity=0.236 Sum_probs=164.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCcc
Q psy1308 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMN 165 (607)
Q Consensus 88 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~ 165 (607)
-.+..||..|..+-|..|+..+ +++|..+.+|.|+||-||...+.+||++|+++|+++|..|. |||||.|+..|+..
T Consensus 42 a~~l~A~~~~d~~ev~~ll~~g-a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~ 120 (527)
T KOG0505|consen 42 AVFLEACSRGDLEEVRKLLNRG-ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN 120 (527)
T ss_pred HHHHhccccccHHHHHHHhccC-CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence 3477889999999999999999 89999999999999999999999999999999999999876 88999999999999
Q ss_pred HHHHHHhcCCCccccCCCCcCcCCcchhhHHHhc-------------C-------------CHHHHHHHHhcCCCCCccC
Q psy1308 166 PFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA-------------G-------------NTEVVELLLKSGADPTVKD 219 (607)
Q Consensus 166 ~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~-------------g-------------~~~~v~~Ll~~gad~~~~d 219 (607)
++++|+.+|+++...+.. |..|+-.|... | -.+=+...+..|.+.++.+
T Consensus 121 i~~~li~~gA~~~avNsd-----g~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~ 195 (527)
T KOG0505|consen 121 IVEYLIQHGANLLAVNSD-----GNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH 195 (527)
T ss_pred HHHHHHHhhhhhhhccCC-----CCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence 999999999988776443 55555443211 1 0222445566899999999
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCce
Q psy1308 220 NSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLV 299 (607)
Q Consensus 220 ~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~ 299 (607)
..|.|.||+|+.+|..+++.+|+..+.+.. ..|..+++||+.+ ...|+..+.+.+................|+-
T Consensus 196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~---~~D~dgWtPlHAA---A~Wg~~~~~elL~~~ga~~d~~t~~g~~p~d 269 (527)
T KOG0505|consen 196 ARGATALHVAAANGYTEVAALLLQAGYSVN---IKDYDGWTPLHAA---AHWGQEDACELLVEHGADMDAKTKMGETPLD 269 (527)
T ss_pred cccchHHHHHHhhhHHHHHHHHHHhccCcc---cccccCCCcccHH---HHhhhHhHHHHHHHhhcccchhhhcCCCCcc
Confidence 889999999999999999999999998876 5678899999665 4678999999887776655443334444654
Q ss_pred e
Q psy1308 300 F 300 (607)
Q Consensus 300 ~ 300 (607)
+
T Consensus 270 v 270 (527)
T KOG0505|consen 270 V 270 (527)
T ss_pred c
Confidence 4
No 94
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.83 E-value=6.2e-20 Score=197.48 Aligned_cols=228 Identities=21% Similarity=0.331 Sum_probs=182.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|.+..+..+...+...... +..+++.|++|+||+.+++.++...... ..+|+.+||+..........+||
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~------~~~vli~Ge~GtGK~~~A~~ih~~~~~~-~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRS------DITVLINGESGTGKELVARALHRHSPRA-NGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCc------CCeEEEECCCCCCHHHHHHHHHHhCCCC-CCCeEEEeCCCCCHHHHHHHhcC
Confidence 3677777777777776654322 4578999999999999999999987765 78999999999988777788999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+..| |.|... ...+.++.+.+|+||||||+.+++++|..|+++++++.+...+|......++++|++|+...+...+
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 285 (463)
T TIGR01818 208 HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR 285 (463)
T ss_pred CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH
Confidence 8766 555432 2345677888999999999999999999999999999998877776666789999999966554322
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccce-eeeccCC--HHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEI-VYFLPFS--KSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~i-v~f~pl~--~~~~~~i~~~ 504 (607)
.+.|+ ++|++|++.+ +...||+ ++|+..++..
T Consensus 286 --------------------------------------------~~~f~-~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~ 320 (463)
T TIGR01818 286 --------------------------------------------QGKFR-EDLFHRLNVIRIHLPPLRERREDIPRLARH 320 (463)
T ss_pred --------------------------------------------cCCcH-HHHHHHhCcceecCCCcccchhhHHHHHHH
Confidence 24476 8999999875 4445564 7899999999
Q ss_pred HHHHHHHHHhhcCCc-EEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNI-NIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i-~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
++..+..+. +. ...+++++++.|.. |+||+|+|+|++++++.+...
T Consensus 321 ~l~~~~~~~----~~~~~~~~~~a~~~L~~-~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 321 FLALAAREL----DVEPKLLDPEALERLKQ-LRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HHHHHHHHh----CCCCCCcCHHHHHHHHh-CCCCChHHHHHHHHHHHHHhC
Confidence 998876644 22 24689999999996 999999999999999977643
No 95
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.83 E-value=1.2e-20 Score=172.62 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=122.5
Q ss_pred CCCccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCC--CCchHHHHHHcCCccH---HHHHHhcCCCccccC
Q psy1308 111 LDVNMRHPLGWTPLHVAAINGKV----DNVRVLLEAGANPNLGD--LFNTVHRTAAEKKMNP---FEVLLKREDEFNDVL 181 (607)
Q Consensus 111 ~~~~~~d~~g~tpLh~A~~~g~~----~~v~~Ll~~ga~~~~~d--~~~~l~~A~~~~~~~~---~~~Ll~~g~~~~~~~ 181 (607)
++++..+.++.++||.||+.|+. +++++|++.|++++.+| ++||||+|+..|+.+. +++|+++|++++..+
T Consensus 11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d 90 (166)
T PHA02743 11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARE 90 (166)
T ss_pred hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCC
Confidence 77888888999999999999998 67778889999988765 4789999999998765 799999999998764
Q ss_pred CCCcCcCCcchhhHHHhcCCHHHHHHHHh-cCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhh
Q psy1308 182 NPNMTFLGFSALHYGVVAGNTEVVELLLK-SGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQRE 251 (607)
Q Consensus 182 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~ 251 (607)
. ..|+||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|+.++++...+
T Consensus 91 ~----~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~ 157 (166)
T PHA02743 91 L----GTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP 157 (166)
T ss_pred C----CCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 2 239999999999999999999995 89999999999999999999999999999999999887643
No 96
>PRK15115 response regulator GlrR; Provisional
Probab=99.83 E-value=1.2e-19 Score=194.16 Aligned_cols=228 Identities=16% Similarity=0.205 Sum_probs=175.5
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|.+..+..+...+...... ...+++.|++|+||+.+|+.++...... ..+|+.++|+.+.+......+||
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~------~~~vli~Ge~GtGk~~lA~~ih~~s~r~-~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS------DVSVLINGQSGTGKEILAQAIHNASPRA-SKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC------CCeEEEEcCCcchHHHHHHHHHHhcCCC-CCCeEEEeCCCCCHHHHHHHhcC
Confidence 4566666666555544443321 3468899999999999999999987665 67999999999988777788998
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
...| +.|... ...+.++.+.+|+||||||+.++++.|..|+++++++.+...++.+....++++|+||+.+.....
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~- 284 (444)
T PRK15115 208 HARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAM- 284 (444)
T ss_pred CCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHH-
Confidence 8766 444322 223557788899999999999999999999999999998776666555678999999995433322
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC---CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF---SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl---~~~~~~~i~~~ 504 (607)
..+.|+ ++|++|++.+.+..|. ..+|+..++..
T Consensus 285 -------------------------------------------~~~~f~-~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~ 320 (444)
T PRK15115 285 -------------------------------------------ARGEFR-EDLYYRLNVVSLKIPALAERTEDIPLLANH 320 (444)
T ss_pred -------------------------------------------HcCCcc-HHHHHhhceeeecCCChHhccccHHHHHHH
Confidence 234576 9999999887666664 45899999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++.++..+... ....++++|++.|.. |+||+|+|+|+++|++.+..
T Consensus 321 ~l~~~~~~~~~---~~~~~~~~a~~~L~~-~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 321 LLRQAAERHKP---FVRAFSTDAMKRLMT-ASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HHHHHHHHhCC---CCCCcCHHHHHHHHh-CCCCChHHHHHHHHHHHHHh
Confidence 99887654321 234689999999996 99999999999999997653
No 97
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.83 E-value=2.1e-19 Score=193.14 Aligned_cols=227 Identities=20% Similarity=0.310 Sum_probs=178.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.+++.+..+..+...+...... ..++++.|++|+||+.+|+.++...... ..+|+.++|+.+........+||
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~------~~~vli~Ge~GtGK~~lA~~ih~~s~~~-~~~~~~i~c~~~~~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS------QASVLISGESGTGKELIARAIHYNSRRA-KGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC------CcEEEEEcCCCccHHHHHHHHHHhCCCC-CCCeEEEECCCCCHHHHHHHhcC
Confidence 3677777777776666655432 3478899999999999999999877654 67999999999988777788999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+..| +.|... ...+.+..+.+|+||||||+.+++.+|..|+++++++.+...++......++++|+||+.+.....+
T Consensus 217 ~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~ 294 (457)
T PRK11361 217 HEKGAFTGAQT--LRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294 (457)
T ss_pred CCCCCCCCCCC--CCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH
Confidence 8665 444322 2245677888999999999999999999999999999888766665556789999999966554322
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~ 504 (607)
.+.|+ +++++|++.+.+..| | .++|+..++..
T Consensus 295 --------------------------------------------~g~~~-~~l~~~l~~~~i~~ppLreR~~di~~l~~~ 329 (457)
T PRK11361 295 --------------------------------------------EGTFR-EDLFYRLNVIHLILPPLRDRREDISLLANH 329 (457)
T ss_pred --------------------------------------------cCCch-HHHHHHhccceecCCChhhchhhHHHHHHH
Confidence 24476 899999987655555 5 45889999999
Q ss_pred HHHHHHHHHhhcCCcE-EEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNIN-IVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~-l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++.++..+. +.. ..+++++++.|.. |+||+|+|+|++.|++.+..
T Consensus 330 ~l~~~~~~~----~~~~~~~~~~a~~~L~~-~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 330 FLQKFSSEN----QRDIIDIDPMAMSLLTA-WSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HHHHHHHHc----CCCCCCcCHHHHHHHHc-CCCCCcHHHHHHHHHHHHHh
Confidence 988876543 333 5789999999996 99999999999999997753
No 98
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.82 E-value=2.1e-20 Score=169.47 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=99.2
Q ss_pred hhccCCCCCHHHHHHHHcCCHHHHHHHHhcC------CCCCccCCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCCCC
Q psy1308 79 LLECQSIKDLTLFRAARYGSAKELKTFIENS------KLDVNMRHPLGWTPLHVAAINGKV---DNVRVLLEAGANPNLG 149 (607)
Q Consensus 79 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~~~~~~d~~g~tpLh~A~~~g~~---~~v~~Ll~~ga~~~~~ 149 (607)
.+..|.+|.||||+||..|+. +.+++..+ +..++.+|..|+||||+|+..|+. +++++|+++|++++.+
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 356788899999999999984 33333222 012345688999999999999987 4688999999999886
Q ss_pred C---CCchHHHHHHcCCccHHHHHHh-cCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCC
Q psy1308 150 D---LFNTVHRTAAEKKMNPFEVLLK-REDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPT 216 (607)
Q Consensus 150 d---~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 216 (607)
+ ++||||+|+..++.+++++|+. .|++++..+. .|+||||+|+..|+.+++++|+++|++++
T Consensus 88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~-----~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY-----AFKTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 4 4678888888888888888886 4777766543 38888888888888888888888887764
No 99
>PHA02741 hypothetical protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=167.27 Aligned_cols=137 Identities=18% Similarity=0.120 Sum_probs=108.9
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCC----H
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGS----A 99 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~----~ 99 (607)
+.++..|.||||+|++.|+.++++.|+..... ...+..++..|..|+||||+|+..|+ .
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~-----------------~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~ 77 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRG-----------------DCHAAALNATDDAGQMCIHIAAEKHEAQLAA 77 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhcc-----------------chhhhhhhccCCCCCcHHHHHHHcCChHHHH
Confidence 34677899999999999999999988643210 01123346788999999999999999 5
Q ss_pred HHHHHHHhcCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCCCc
Q psy1308 100 KELKTFIENSKLDVNMRHP-LGWTPLHVAAINGKVDNVRVLLE-AGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEF 177 (607)
Q Consensus 100 ~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~ 177 (607)
+++++|++.+ +++|.++. .|+||||+|+..++.+++++|++ .|++++..|.
T Consensus 78 ~ii~~Ll~~g-adin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~-------------------------- 130 (169)
T PHA02741 78 EIIDHLIELG-ADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA-------------------------- 130 (169)
T ss_pred HHHHHHHHcC-CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC--------------------------
Confidence 8999999998 99999985 89999999999999999999997 5898887543
Q ss_pred cccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 178 NDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 178 ~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
+|+||||+|+..|+.+++++|++.++.
T Consensus 131 ----------~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 131 ----------DNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred ----------CCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 266677777777777777776666543
No 100
>KOG0195|consensus
Probab=99.82 E-value=9.8e-21 Score=174.98 Aligned_cols=134 Identities=30% Similarity=0.465 Sum_probs=120.9
Q ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHH
Q psy1308 94 ARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLL 171 (607)
Q Consensus 94 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll 171 (607)
|+.|+.-.|+..|+...-|.|.-|..|.+||||||+.|+..+|+.|+..|+.+|..+- .||||+|+..||.++++.|+
T Consensus 8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll 87 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL 87 (448)
T ss_pred hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence 5566666667777766688999999999999999999999999999999999998764 57999999999999999999
Q ss_pred hcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhh
Q psy1308 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDA 232 (607)
Q Consensus 172 ~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~ 232 (607)
+..+|+|..+.. |+|||||||..|...+++-|+..||-+++.|++|.|||..|.-.
T Consensus 88 ~~kadvnavneh-----gntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~ 143 (448)
T KOG0195|consen 88 SRKADVNAVNEH-----GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPM 143 (448)
T ss_pred HHhcccchhhcc-----CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchH
Confidence 999999998665 99999999999999999999999999999999999999987543
No 101
>KOG2004|consensus
Probab=99.81 E-value=1.6e-19 Score=187.34 Aligned_cols=281 Identities=21% Similarity=0.252 Sum_probs=209.8
Q ss_pred HHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 263 EQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 263 ~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
...|.+...|.+...+.+.+.+.-.... ...+-..++|+||||+|||.++|.||+.+++. |+++......+
T Consensus 406 k~iLdeDHYgm~dVKeRILEfiAV~kLr--gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk----FfRfSvGG~tD--- 476 (906)
T KOG2004|consen 406 KEILDEDHYGMEDVKERILEFIAVGKLR--GSVQGKILCFVGPPGVGKTSIAKSIARALNRK----FFRFSVGGMTD--- 476 (906)
T ss_pred HHhhcccccchHHHHHHHHHHHHHHhhc--ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc----eEEEecccccc---
Confidence 3445667788888888888877655422 12223479999999999999999999999887 99999888755
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHhhC--CCeEEEEecCCccCHHH----HHHHHHhhc---cceeecC-CCcEEecCce
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLKKC--PNAVVLFDEVDKAHPDV----LTVLLQLFD---EGRLTDG-KGKTIECKDA 412 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~~~--~~~vl~lDEiek~~~~~----~~~Ll~~~~---~~~~~~~-~g~~~~~~~~ 412 (607)
++++-|+...|+|...|.. .+.+... .+.+++||||||+.... -.+||+++| +..|.|. -...+|.+++
T Consensus 477 vAeIkGHRRTYVGAMPGki-Iq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 477 VAEIKGHRRTYVGAMPGKI-IQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred HHhhcccceeeeccCChHH-HHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 7888899999999876654 4555554 47899999999986433 378888887 5556663 3567899999
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP 492 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p 492 (607)
+||||.|.- +.. +|.|+.|+ ++|...-
T Consensus 556 LFicTAN~i---------------------------------------------------dtI-P~pLlDRM-EvIelsG 582 (906)
T KOG2004|consen 556 LFICTANVI---------------------------------------------------DTI-PPPLLDRM-EVIELSG 582 (906)
T ss_pred EEEEecccc---------------------------------------------------ccC-Chhhhhhh-heeeccC
Confidence 999999921 012 38899999 7888888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHHhcc--------
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSV-------- 564 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~-------- 564 (607)
+..+|..+|+..+|-.-+.+-.....-.+.++++|+..|.+.|..+.|+|.|++.|+++....-.+.....+
T Consensus 583 Yv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~~~~~~~~~ 662 (906)
T KOG2004|consen 583 YVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGENSKEESAEK 662 (906)
T ss_pred ccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 999999999999987544332211123678899999888777999999999999999765544322222211
Q ss_pred -----------------------CCCCCEEEEEEecCCcccccCCCCceEEEEEeccCccccccc
Q psy1308 565 -----------------------IGKGSFVRLYVQWSKEVSEDSAKGGIIKLKVKKKGMKDFIDV 606 (607)
Q Consensus 565 -----------------------~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (607)
......+.|+.++-..+++.+.......|++.+.|..+|+++
T Consensus 663 ~~~~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~e~~y~~tp~GVvmGLaW 727 (906)
T KOG2004|consen 663 NGRESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTSERMYEVTPPGVVMGLAW 727 (906)
T ss_pred ccccccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccHHHHhccCCCeeEEEEEE
Confidence 112345777777778888777777777999999999999875
No 102
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=178.72 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=109.9
Q ss_pred cCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCC------CCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCc
Q psy1308 115 MRHPLGWTP-LHVAAINGKVDNVRVLLEAGANPNLG------DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTF 187 (607)
Q Consensus 115 ~~d~~g~tp-Lh~A~~~g~~~~v~~Ll~~ga~~~~~------d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~ 187 (607)
.+|..|+|+ ||.|+..|+.+++++|+++|++++.+ ++.||||+|+..++.+++++|+++|++++..++ .
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~----~ 102 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE----E 102 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC----C
Confidence 467777765 66677789999999999999999986 467899999999999999999999999997532 2
Q ss_pred CCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHH
Q psy1308 188 LGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYA 242 (607)
Q Consensus 188 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll 242 (607)
.|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++..+.
T Consensus 103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~ 157 (300)
T PHA02884 103 AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC 157 (300)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence 3999999999999999999999999999999999999999999988888775554
No 103
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.81 E-value=3.8e-20 Score=167.76 Aligned_cols=130 Identities=19% Similarity=0.178 Sum_probs=109.0
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCC-------CCCCCchHHHHHHcCCcc---HHHHHHhcCCCcccc
Q psy1308 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA--NPN-------LGDLFNTVHRTAAEKKMN---PFEVLLKREDEFNDV 180 (607)
Q Consensus 113 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga--~~~-------~~d~~~~l~~A~~~~~~~---~~~~Ll~~g~~~~~~ 180 (607)
.+.+|..|.||||+||..|+ +++++...+. +.+ -.+++||||+|+..|+.+ ++++|++.|++++..
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 45678899999999999998 3455444333 221 235678999999999874 688999999999876
Q ss_pred CCCCcCcCCcchhhHHHhcCCHHHHHHHHh-cCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhH
Q psy1308 181 LNPNMTFLGFSALHYGVVAGNTEVVELLLK-SGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248 (607)
Q Consensus 181 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~ 248 (607)
++ ..|+||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|+..+++.
T Consensus 88 ~~----~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 88 ER----VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred CC----CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 43 239999999999999999999998 59999999999999999999999999999999988753
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=3.3e-18 Score=169.83 Aligned_cols=225 Identities=21% Similarity=0.306 Sum_probs=157.0
Q ss_pred cccccHHHHHHhHhhhhHHHHHHHHHHHH-------HhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---C
Q psy1308 257 RRKYPLEQRLKDRIVGQESAINIISAAIK-------RKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---K 326 (607)
Q Consensus 257 ~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~-------~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~ 326 (607)
.+...+...+.+.++|.+...+.+...+. +...+........+++|+||+|||||.+|+.+++.++..+ .
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~ 90 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRK 90 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc
Confidence 34444555666678888888887755432 2234444333234899999999999999999998875422 2
Q ss_pred CceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc---------CHHHHHHHHHhhccc
Q psy1308 327 EAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA---------HPDVLTVLLQLFDEG 397 (607)
Q Consensus 327 ~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~---------~~~~~~~Ll~~~~~~ 397 (607)
.+|+.++++.. +..++| .. .....+.++.+.++||||||++.+ +.++++.|++.++++
T Consensus 91 ~~~v~v~~~~l-----~~~~~g-------~~-~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~ 157 (284)
T TIGR02880 91 GHLVSVTRDDL-----VGQYIG-------HT-APKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ 157 (284)
T ss_pred ceEEEecHHHH-----hHhhcc-------cc-hHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC
Confidence 35777775322 223333 21 234556788888899999999976 467899999999854
Q ss_pred eeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCC
Q psy1308 398 RLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRR 477 (607)
Q Consensus 398 ~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~ 477 (607)
. .++++|++++... +.. . -.. +
T Consensus 158 ~-----------~~~~vI~a~~~~~--~~~-~-------------------------------------------~~~-n 179 (284)
T TIGR02880 158 R-----------DDLVVILAGYKDR--MDS-F-------------------------------------------FES-N 179 (284)
T ss_pred C-----------CCEEEEEeCCcHH--HHH-H-------------------------------------------Hhh-C
Confidence 2 5678888877321 100 0 012 3
Q ss_pred hhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc------cCCCCCCccchhHHHHHH
Q psy1308 478 DEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD------GYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 478 ~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~------~~~~~~GaR~L~~~i~~~ 551 (607)
|+|.+|++..+.|.||+.+|+..|+..++.+.. ..+++++.+.+.. ..+|++|+|+|++.+++.
T Consensus 180 p~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~----------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 180 PGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ----------YRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc----------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999887632 2356777766653 238999999999999999
Q ss_pred HHHHHHHHHHh
Q psy1308 552 VVSQLAAAHEK 562 (607)
Q Consensus 552 i~~~l~~~~l~ 562 (607)
+...-.+....
T Consensus 250 ~~~~~~r~~~~ 260 (284)
T TIGR02880 250 RLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHhcC
Confidence 88877666543
No 105
>KOG2170|consensus
Probab=99.79 E-value=1.9e-18 Score=162.94 Aligned_cols=240 Identities=23% Similarity=0.335 Sum_probs=169.8
Q ss_pred ccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeeccc
Q psy1308 258 RKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSE 336 (607)
Q Consensus 258 ~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~ 336 (607)
....|+..+.+.+.||.-+.+.+..+++..... ..|.+|+++.|+|++||||..+++.||+.++..+ ..+++..-.+.
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat 150 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVAT 150 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhh
Confidence 356799999999999999999999999988765 4589999999999999999999999999998754 33444433333
Q ss_pred ccccc--hhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 337 YQEKH--EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 337 ~~~~~--~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
....+ .+..+= - +-..++.+-+..++.++++|||+||+|+.+++.|-.+++-....+. ++|.++||
T Consensus 151 ~hFP~~~~ie~Yk-------~-eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~g----v~frkaIF 218 (344)
T KOG2170|consen 151 LHFPHASKIEDYK-------E-ELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSG----VDFRKAIF 218 (344)
T ss_pred ccCCChHHHHHHH-------H-HHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcccccccc----ccccceEE
Confidence 32221 111110 0 1224566778889999999999999999999999999986444444 78999999
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhh--hccccceeeecc
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEF--LGRINEIVYFLP 492 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el--~~ri~~iv~f~p 492 (607)
||-||.|..+|.+..+++.+.+.+++.-+.... +.........+. ...+...++ .++||.+|+|.|
T Consensus 219 IfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~-----------E~~L~~~~~n~~-~~Gl~~S~li~~~lid~fIPFLP 286 (344)
T KOG2170|consen 219 IFLSNAGGSEIARIALENARNGKPREQLRLKSF-----------EPALMQSAFNEK-AGGLVHSRLISNNLIDHFIPFLP 286 (344)
T ss_pred EEEcCCcchHHHHHHHHHHHcCCCcccchhhhh-----------hHHHHHhhhccc-cccccccccchhhHHhhccCcCc
Confidence 999999999999999988877765543332211 111111110000 011111222 246899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
+++.++..+++.++... | +..+.+.++-++
T Consensus 287 Lek~hV~~C~r~el~~r--------g--~~~d~~~~erva 316 (344)
T KOG2170|consen 287 LEKRHVRSCIRAELRKR--------G--LAPDQDFVERVA 316 (344)
T ss_pred ccHHHHHHHHHHHHHhc--------c--cccchHHHHHHH
Confidence 99999999999888531 2 445666666654
No 106
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.79 E-value=2.3e-18 Score=184.32 Aligned_cols=227 Identities=19% Similarity=0.295 Sum_probs=173.5
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcC
Q psy1308 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~ 349 (607)
++|.+..+..+...+..... ....++++|.+|+||+.+++.++...... ..+|+.+||+..........+||.
T Consensus 141 lig~s~~~~~~~~~i~~~~~------~~~~vli~ge~g~gk~~~a~~ih~~s~~~-~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP------SEATVLIHGDSGTGKELVARAIHASSARS-EKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhccC------CCCeEEEEecCCCCHHHHHHHHHHcCCCC-CCCeeeeeCCCCCHHHHHHHhcCC
Confidence 55666666655554433321 13467889999999999999999887665 789999999999887777888998
Q ss_pred CCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 350 PPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 350 ~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
..| +.|... ...+.+..+.+|++|||||+.+++.+|..|+++++++.+...++......++++|++|+.......
T Consensus 214 ~~~~~~~~~~--~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~-- 289 (441)
T PRK10365 214 EKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEV-- 289 (441)
T ss_pred CCCCcCCCCc--CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHH--
Confidence 766 444322 123456788899999999999999999999999999998876666555678899999985543321
Q ss_pred HhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHHH
Q psy1308 429 ALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCRE 505 (607)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~~ 505 (607)
..+.|+ ++|++|++.+.+..| | +.+|+..++..+
T Consensus 290 ------------------------------------------~~~~~~-~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~ 326 (441)
T PRK10365 290 ------------------------------------------NAGRFR-QDLYYRLNVVAIEVPSLRQRREDIPLLAGHF 326 (441)
T ss_pred ------------------------------------------HcCCch-HHHHHHhccceecCCChhhcchhHHHHHHHH
Confidence 234576 999999987655555 4 457999999999
Q ss_pred HHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 506 LNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 506 l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
+.++..+... -...+++++++.|.. |+||+|+|+|++++++.+..
T Consensus 327 l~~~~~~~~~---~~~~~~~~a~~~L~~-~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 327 LQRFAERNRK---AVKGFTPQAMDLLIH-YDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHHHHHhCC---CCCCcCHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 9887664421 134689999999996 99999999999999987653
No 107
>KOG0507|consensus
Probab=99.79 E-value=2.2e-19 Score=186.44 Aligned_cols=197 Identities=20% Similarity=0.198 Sum_probs=167.1
Q ss_pred hhhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccC
Q psy1308 4 ILVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQ 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ 83 (607)
.|+.+.+++..+++ |-..-...+..|.+|||+|+..|+.++++.++.... .++...
T Consensus 57 ~Lng~~~is~llle-~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d-----------------------~~na~~ 112 (854)
T KOG0507|consen 57 VLNGQNQISKLLLD-YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTD-----------------------ILNAVN 112 (854)
T ss_pred HhcCchHHHHHHhc-chhhhhhhhccCcceEEehhhcCcchHHHHHHhccc-----------------------CCCccc
Confidence 46777777776664 333333455788999999999999999999986652 235677
Q ss_pred CCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----------CCCCc
Q psy1308 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL----------GDLFN 153 (607)
Q Consensus 84 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~----------~d~~~ 153 (607)
..|.||||.||+.||.++|.+||.++ +|+-.+|..+.|+|-+||+.|..++|+.|+....++.. ...-+
T Consensus 113 ~e~~tplhlaaqhgh~dvv~~Ll~~~-adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~ 191 (854)
T KOG0507|consen 113 IENETPLHLAAQHGHLEVVFYLLKKN-ADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIY 191 (854)
T ss_pred ccCcCccchhhhhcchHHHHHHHhcC-CCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcC
Confidence 89999999999999999999999999 99999999999999999999999999999987322211 11123
Q ss_pred hHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhh
Q psy1308 154 TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED 231 (607)
Q Consensus 154 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~ 231 (607)
|||.|+++||.++++.|++.|.++|.... ..|+||.|+..|..++|.+|++.|.+..++|.+|+|+|.+-..
T Consensus 192 plHlaakngh~~~~~~ll~ag~din~~t~------~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d 263 (854)
T KOG0507|consen 192 PLHLAAKNGHVECMQALLEAGFDINYTTE------DGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIID 263 (854)
T ss_pred CcchhhhcchHHHHHHHHhcCCCcccccc------cchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence 99999999999999999999999998755 4599999999999999999999999999999999999987654
No 108
>CHL00181 cbbX CbbX; Provisional
Probab=99.78 E-value=1e-17 Score=166.06 Aligned_cols=225 Identities=21% Similarity=0.269 Sum_probs=155.5
Q ss_pred cccccHHHHHHhHhhhhHHHHHHHHHHHH-------HhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---C
Q psy1308 257 RRKYPLEQRLKDRIVGQESAINIISAAIK-------RKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---K 326 (607)
Q Consensus 257 ~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~-------~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~ 326 (607)
.....+...+...++|.....+.+.+.+. +...+...+..+.+++|.||||||||.+|+.+++.++..+ .
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 34455667777788998888877755432 2234555555556899999999999999999999875421 2
Q ss_pred CceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc---------CHHHHHHHHHhhccc
Q psy1308 327 EAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA---------HPDVLTVLLQLFDEG 397 (607)
Q Consensus 327 ~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~---------~~~~~~~Ll~~~~~~ 397 (607)
.+++.++.+.+ +..++| .. .....+.++.+.++||||||++.+ .+++++.|+++++++
T Consensus 92 ~~~~~v~~~~l-----~~~~~g-------~~-~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 92 GHLLTVTRDDL-----VGQYIG-------HT-APKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred CceEEecHHHH-----HHHHhc-------cc-hHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 34666654332 223333 21 123456777888999999999985 577999999999854
Q ss_pred eeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCC
Q psy1308 398 RLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRR 477 (607)
Q Consensus 398 ~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~ 477 (607)
. .+++||++++.. .+.. . . .. +
T Consensus 159 ~-----------~~~~vI~ag~~~--~~~~-~------------------------------------------~-~~-n 180 (287)
T CHL00181 159 R-----------DDLVVIFAGYKD--RMDK-F------------------------------------------Y-ES-N 180 (287)
T ss_pred C-----------CCEEEEEeCCcH--HHHH-H------------------------------------------H-hc-C
Confidence 2 467888887632 1111 0 0 12 3
Q ss_pred hhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH----HHHHHc-cC-CCCCCccchhHHHHHH
Q psy1308 478 DEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV----ETILAD-GY-DVHYGARSIKHEVERQ 551 (607)
Q Consensus 478 ~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a----~~~L~~-~~-~~~~GaR~L~~~i~~~ 551 (607)
|+|.+|++.++.|.|++.+++.+|+..++.+... .+++++ ++++.+ ++ ++.+|+|++++++++.
T Consensus 181 p~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~----------~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 181 PGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQY----------QLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcC----------CCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999875422 234443 444443 33 5667799999999999
Q ss_pred HHHHHHHHHHh
Q psy1308 552 VVSQLAAAHEK 562 (607)
Q Consensus 552 i~~~l~~~~l~ 562 (607)
+..+..+....
T Consensus 251 ~~~~~~r~~~~ 261 (287)
T CHL00181 251 RMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHcC
Confidence 88887766544
No 109
>KOG4369|consensus
Probab=99.77 E-value=2.3e-19 Score=191.13 Aligned_cols=217 Identities=17% Similarity=0.157 Sum_probs=194.5
Q ss_pred CCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccc----------h-hccCCCCCHHHHHHHHcC
Q psy1308 29 FQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALT----------L-LECQSIKDLTLFRAARYG 97 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~----------~-~~~~~~g~t~Lh~A~~~g 97 (607)
.-.|+|-.||..||.+++++|+..+..+...+..++.+++++...++... + ...|..++|+|-+||..|
T Consensus 756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsgg 835 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGG 835 (2131)
T ss_pred cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCC
Confidence 35699999999999999999999999999999999999998854444332 2 357889999999999999
Q ss_pred CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----chHHHHHHcCCccHHHHHHhc
Q psy1308 98 SAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF----NTVHRTAAEKKMNPFEVLLKR 173 (607)
Q Consensus 98 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~----~~l~~A~~~~~~~~~~~Ll~~ 173 (607)
..++|++||..+ ++-..++-..+|||.+|...|+.++|+.|+.+|+.+|.+.+. .||++|+.+||...++.|++.
T Consensus 836 r~~vvelLl~~g-ankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~ 914 (2131)
T KOG4369|consen 836 RTRVVELLLNAG-ANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP 914 (2131)
T ss_pred cchHHHHHHHhh-ccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc
Confidence 999999999999 888889999999999999999999999999999999987762 399999999999999999999
Q ss_pred CCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHh
Q psy1308 174 EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 174 g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~ 250 (607)
|.|+|..... +.+|+|-+|+..|..++|.+||.+.+++..+-+.|.|||+-++..|..++-..|+..|+|.+.
T Consensus 915 gsdiNaqIeT----NrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~na 987 (2131)
T KOG4369|consen 915 GSDINAQIET----NRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA 987 (2131)
T ss_pred cchhcccccc----ccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccccc
Confidence 9999987654 278999999999999999999999999999999999999999999999999999999998764
No 110
>KOG0512|consensus
Probab=99.76 E-value=5e-18 Score=145.83 Aligned_cols=139 Identities=20% Similarity=0.204 Sum_probs=116.2
Q ss_pred HHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy1308 34 LFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDV 113 (607)
Q Consensus 34 L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 113 (607)
+.+|+..+.+..|+.|++... ..++.+|.+|.||||.|+.+|+.++|+.|+..| +++
T Consensus 67 ~lwaae~nrl~eV~~lL~e~a----------------------n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g-An~ 123 (228)
T KOG0512|consen 67 LLWAAEKNRLTEVQRLLSEKA----------------------NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG-ANK 123 (228)
T ss_pred HHHHHhhccHHHHHHHHHhcc----------------------ccccccccccccHHHHHHhcCchHHHHHHHHcc-CCc
Confidence 788999999999998876532 233688999999999999999999999999999 999
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCchHHHHHHcCCcc-HHHHHHh-cCCCccccCCCCcCcCC
Q psy1308 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD--LFNTVHRTAAEKKMN-PFEVLLK-REDEFNDVLNPNMTFLG 189 (607)
Q Consensus 114 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--~~~~l~~A~~~~~~~-~~~~Ll~-~g~~~~~~~~~~~d~~g 189 (607)
+.+...||||||-||.-++.+++.+||++|+|+|+.. .+||||.||...+.. .+.+|+. .+.+.-...+. +
T Consensus 124 ~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~-----e 198 (228)
T KOG0512|consen 124 EAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNL-----E 198 (228)
T ss_pred ccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCc-----c
Confidence 9999999999999999999999999999999999954 378999999887654 4555553 44444444333 8
Q ss_pred cchhhHHHhcC
Q psy1308 190 FSALHYGVVAG 200 (607)
Q Consensus 190 ~TpLh~A~~~g 200 (607)
.||+.+|-+.+
T Consensus 199 eta~~iARRT~ 209 (228)
T KOG0512|consen 199 ETAFDIARRTS 209 (228)
T ss_pred chHHHHHHHhh
Confidence 99999997764
No 111
>KOG3676|consensus
Probab=99.74 E-value=6.8e-18 Score=177.97 Aligned_cols=200 Identities=24% Similarity=0.266 Sum_probs=162.8
Q ss_pred CCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHc---CCHHHH
Q psy1308 26 KRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARY---GSAKEL 102 (607)
Q Consensus 26 ~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v 102 (607)
.+.+.+.++..|...+.....+.|+........ + ...-.++.+...|.|+||.|..+ ++.+++
T Consensus 97 l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~---------r-----~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la 162 (782)
T KOG3676|consen 97 LKRFDRDALFIADSEGALSDLDGLLKFLRKSKY---------R-----LTDWKLNERGATGETLLHKALLNLSDGHNELA 162 (782)
T ss_pred hhhcchhhhhhccccccHHHHhccchhhhhhhh---------h-----hhhhccccccchhhhHHHHHHhcCchhHHHHH
Confidence 444455777888888887777777654321110 0 11123356678999999999884 567999
Q ss_pred HHHHhcCCCCCccC----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC---------CC--------------Cc--
Q psy1308 103 KTFIENSKLDVNMR----HPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG---------DL--------------FN-- 153 (607)
Q Consensus 103 ~~Ll~~~~~~~~~~----d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~---------d~--------------~~-- 153 (607)
+.|++..+--+|.. ...|.||||+|+.+.+.++|++|++.|||++.+ |. +|
T Consensus 163 ~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEy 242 (782)
T KOG3676|consen 163 RVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEY 242 (782)
T ss_pred HHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccC
Confidence 99999765444432 346999999999999999999999999999873 11 23
Q ss_pred hHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC--CCccCCCCCCCCcchhh
Q psy1308 154 TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD--PTVKDNSGHIPSDYAED 231 (607)
Q Consensus 154 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~g~Tpl~~A~~ 231 (607)
||-+||..++.+++++|+++|||++.+|.+ |+|.||..+.+-..++-.+++++|++ ...+|+.|-|||.+|++
T Consensus 243 PLSfAAC~nq~eivrlLl~~gAd~~aqDS~-----GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak 317 (782)
T KOG3676|consen 243 PLSFAACTNQPEIVRLLLAHGADPNAQDSN-----GNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK 317 (782)
T ss_pred chHHHHHcCCHHHHHHHHhcCCCCCccccC-----CChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH
Confidence 999999999999999999999999988555 99999999999999999999999999 99999999999999999
Q ss_pred hhHHHHHHHHHHh
Q psy1308 232 ANIKQILQKYAEK 244 (607)
Q Consensus 232 ~~~~~~~~~ll~~ 244 (607)
.|..++.+.+++.
T Consensus 318 lGk~emf~~ile~ 330 (782)
T KOG3676|consen 318 LGKKEMFQHILER 330 (782)
T ss_pred hhhHHHHHHHHHh
Confidence 9999999999987
No 112
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.72 E-value=3.1e-17 Score=133.76 Aligned_cols=89 Identities=45% Similarity=0.648 Sum_probs=57.5
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHH
Q psy1308 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEV 169 (607)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~ 169 (607)
||+||+.|+.+++++|++.+ .+++. |.||||+||..|+.+++++|+++|++++.+|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~-~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~------------------- 56 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKG-ADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD------------------- 56 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTT-STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS-------------------
T ss_pred CHHHHHcCCHHHHHHHHHCc-CCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC-------------------
Confidence 45555555555555555544 44444 5555555555555555555555555555432
Q ss_pred HHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccC
Q psy1308 170 LLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKD 219 (607)
Q Consensus 170 Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 219 (607)
..|+||||+|+.+|+.+++++|+++|++++.+|
T Consensus 57 -----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 57 -----------------KNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp -----------------TTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred -----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 238999999999999999999999999988875
No 113
>KOG4369|consensus
Probab=99.72 E-value=6.9e-18 Score=180.07 Aligned_cols=237 Identities=17% Similarity=0.119 Sum_probs=153.6
Q ss_pred CCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHH----------HccCccchhc--cCCCCCHHHHH
Q psy1308 25 YKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFAS----------ACSLALTLLE--CQSIKDLTLFR 92 (607)
Q Consensus 25 ~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~----------~~~~~~~~~~--~~~~g~t~Lh~ 92 (607)
..+..+.|+|.+||..|..++|++|+..+.....++-..++++.++. ++..+..++. ..+.|-+||++
T Consensus 819 Qsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLml 898 (2131)
T KOG4369|consen 819 QSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLML 898 (2131)
T ss_pred hcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhh
Confidence 34555556666666666666666666555555555555555554442 2222222222 22345566666
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCchHHHHHHcCCccHHHH
Q psy1308 93 AARYGSAKELKTFIENSKLDVNMRH-PLGWTPLHVAAINGKVDNVRVLLEAGANPNL--GDLFNTVHRTAAEKKMNPFEV 169 (607)
Q Consensus 93 A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~--~d~~~~l~~A~~~~~~~~~~~ 169 (607)
|+.+||...++.||+.| .|+|..= .+-+|+|-+||..|..++|.+||.+.+++.. +.+.|||+-+|..|.+++-++
T Consensus 899 atmngh~~at~~ll~~g-sdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~ 977 (2131)
T KOG4369|consen 899 ATMNGHQAATLSLLQPG-SDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNL 977 (2131)
T ss_pred hhhccccHHHHHHhccc-chhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchh
Confidence 66666666666666655 5555442 2234566666666666666666665555544 334567888888888888888
Q ss_pred HHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 170 LLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 170 Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
||..|+|+|...... .-.|+|-+++..||...|..|+...|-+.++|.+|+|+|.+|+..|+...+..|++++++..
T Consensus 978 li~~gad~nasPvp~---T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d 1054 (2131)
T KOG4369|consen 978 LIAAGADTNASPVPN---TWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADAD 1054 (2131)
T ss_pred hhhcccccccCCCCC---cCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChh
Confidence 888888877654321 14477888888888888888888778888889999999999999999999999999998876
Q ss_pred hhHHHhhcccccHHHHHHh
Q psy1308 250 REKEAEERRKYPLEQRLKD 268 (607)
Q Consensus 250 ~~~~~~~~~~~~L~~~l~~ 268 (607)
..++++.+++..++++
T Consensus 1055 ---~qdnr~~S~~maafRK 1070 (2131)
T KOG4369|consen 1055 ---QQDNRTNSRTMAAFRK 1070 (2131)
T ss_pred ---hhhcccccccHHHHHh
Confidence 4567777777666554
No 114
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-16 Score=152.05 Aligned_cols=160 Identities=19% Similarity=0.292 Sum_probs=113.1
Q ss_pred CCeEEEEecCCccC------------HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhccc
Q psy1308 370 PNAVVLFDEVDKAH------------PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGE 437 (607)
Q Consensus 370 ~~~vl~lDEiek~~------------~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~ 437 (607)
..|++|||||||.- ..||.-||.+++...+....|- +...+.+||.+....-..
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~-VkTdHILFIasGAFh~sK------------- 315 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGP-VKTDHILFIASGAFHVAK------------- 315 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccc-cccceEEEEecCceecCC-------------
Confidence 37999999999952 2489999999986666555443 566778888876521100
Q ss_pred ccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHH---Hh
Q psy1308 438 EFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKK---AL 514 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~---~~ 514 (607)
+ ++ +- |||.+||..-|...+|+.+++..|+...=..+..+ +.
T Consensus 316 -----------P--------------SD---------Li-PELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLl 360 (444)
T COG1220 316 -----------P--------------SD---------LI-PELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALL 360 (444)
T ss_pred -----------h--------------hh---------cC-hhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHH
Confidence 0 11 22 99999999999999999999999986644444433 22
Q ss_pred hcCCcEEEeCHhHHHHHHc-cCC-----CCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEEEEEecCCccc
Q psy1308 515 DKHNINIVWDIDVETILAD-GYD-----VHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVS 582 (607)
Q Consensus 515 ~~~~i~l~~~~~a~~~L~~-~~~-----~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~~~~~~ 582 (607)
...++.+.+++++++.|++ +|. ..-|||.|+.++|+.+.+-..++ .-..|.+++|+..--..++
T Consensus 361 kTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFeA----~d~~g~~v~Id~~yV~~~l 430 (444)
T COG1220 361 KTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEA----PDMSGQKVTIDAEYVEEKL 430 (444)
T ss_pred hhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCccC----CcCCCCeEEEcHHHHHHHH
Confidence 4459999999999999986 454 45799999999998666533222 2234788888766544443
No 115
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.69 E-value=8.4e-16 Score=151.65 Aligned_cols=216 Identities=21% Similarity=0.338 Sum_probs=148.7
Q ss_pred HhhhhHHHHHHHHHHH-------HHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEeeccccc
Q psy1308 269 RIVGQESAINIISAAI-------KRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRLDMSEYQ 338 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i-------~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l~~a~~~ 338 (607)
.++|.+.+.+.+...+ .+...|...+..+.+++|+||+|||||.+|+.+++.+...+ ...++.++++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~-- 84 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD-- 84 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH--
Confidence 4778887777665443 22345555555566899999999999999999999874321 23455555543
Q ss_pred ccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccC--------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 339 EKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH--------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 339 ~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~--------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
+++ .|+|. ....+.+.++.+.++||||||++.+. .+.++.|++.++++. .
T Consensus 85 -------l~~---~~~g~-~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-----------~ 142 (261)
T TIGR02881 85 -------LVG---EYIGH-TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-----------N 142 (261)
T ss_pred -------hhh---hhccc-hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-----------C
Confidence 222 23332 23345677888889999999999865 467889999988542 4
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
++++|+++... .+.. ...+ +|.|.+|++..+.|
T Consensus 143 ~~~vila~~~~--~~~~--------------------------------------------~~~~-~p~L~sRf~~~i~f 175 (261)
T TIGR02881 143 EFVLILAGYSD--EMDY--------------------------------------------FLSL-NPGLRSRFPISIDF 175 (261)
T ss_pred CEEEEecCCcc--hhHH--------------------------------------------HHhc-ChHHHhccceEEEE
Confidence 45677776521 1100 0012 28899999888999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc---c-----CCCCCCccchhHHHHHHHHHHHHHHHHh
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD---G-----YDVHYGARSIKHEVERQVVSQLAAAHEK 562 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~---~-----~~~~~GaR~L~~~i~~~i~~~l~~~~l~ 562 (607)
.|++.+++.+|+...+.. . ...++++++++|.+ + -...+++|.+++.+++.+.....+.+-.
T Consensus 176 ~~~~~~el~~Il~~~~~~--------~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 176 PDYTVEELMEIAERMVKE--------R--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred CCCCHHHHHHHHHHHHHH--------c--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999877743 1 24588999888853 1 2236899999999999998887776655
Q ss_pred ccC
Q psy1308 563 SVI 565 (607)
Q Consensus 563 ~~~ 565 (607)
+..
T Consensus 246 ~~~ 248 (261)
T TIGR02881 246 SDY 248 (261)
T ss_pred CCC
Confidence 443
No 116
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.69 E-value=4.5e-16 Score=172.56 Aligned_cols=150 Identities=33% Similarity=0.428 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHH
Q psy1308 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPF 167 (607)
Q Consensus 88 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~ 167 (607)
+.|+.|+..|+.++++.|++.| +++|.+|..|+||||+||..|+.+++++|+++|++++.+|.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~G-adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~---------------- 146 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK---------------- 146 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----------------
Confidence 4588899999999999999988 89999999999999999999999999999999998887643
Q ss_pred HHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhc-------CCCCCccCCCCCCCCcchhhhhHHHHHHH
Q psy1308 168 EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS-------GADPTVKDNSGHIPSDYAEDANIKQILQK 240 (607)
Q Consensus 168 ~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-------gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ 240 (607)
.|+||||+|+..|+.+++++|+++ |++++..+..|.+|+..+.....
T Consensus 147 --------------------~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~~~~------ 200 (664)
T PTZ00322 147 --------------------DGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISS------ 200 (664)
T ss_pred --------------------CCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhhhhhh------
Confidence 389999999999999999999998 88999888888888664331100
Q ss_pred HHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCC-CCCceeeeeccCCCChhHHHHHHHH
Q psy1308 241 YAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDD-DHPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 241 ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~-~~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
... + +. ..+.+ .....+.+.|.+|+|||.+++.|++
T Consensus 201 ---~~~--------d--------------~~------------------~~p~p~~~~~~~~~vglp~~GKStia~~L~~ 237 (664)
T PTZ00322 201 ---HHP--------D--------------FS------------------AVPQPMMGSLIVIMVGLPGRGKTYVARQIQR 237 (664)
T ss_pred ---ccc--------c--------------cc------------------ccCcccccceeEEecccCCCChhHHHHHHHH
Confidence 000 0 00 00111 1123688999999999999999999
Q ss_pred Hhcc
Q psy1308 320 YIHR 323 (607)
Q Consensus 320 ~l~~ 323 (607)
++..
T Consensus 238 ~l~~ 241 (664)
T PTZ00322 238 YFQW 241 (664)
T ss_pred HHHh
Confidence 9743
No 117
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.68 E-value=1.4e-15 Score=163.81 Aligned_cols=212 Identities=19% Similarity=0.303 Sum_probs=147.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhcc------CcCCceEEeecccc--ccc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR------DKKEAFIRLDMSEY--QEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~------~~~~~~~~l~~a~~--~~~ 340 (607)
.++||+.+++.+..++.. ..+.+++|+||+|||||.+|+.+++.... ....+|+.+||+.. .+.
T Consensus 66 ~iiGqs~~i~~l~~al~~--------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~ 137 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG--------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDER 137 (531)
T ss_pred HeeCcHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcc
Confidence 589999999888755321 12558899999999999999999986422 11468999999752 222
Q ss_pred chhHhhhcCC--CCCccCCCC------chhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCC------c-
Q psy1308 341 HEVAKLIGAP--PGYLGHDDG------GQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKG------K- 405 (607)
Q Consensus 341 ~~~~~llg~~--~g~~g~~~~------~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g------~- 405 (607)
.....++|+. +.|.|.... ....+.+..+++++||||||+++++..|+.|+++++++.+....+ .
T Consensus 138 ~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~ 217 (531)
T TIGR02902 138 GIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPN 217 (531)
T ss_pred ccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcc
Confidence 2223455542 223332111 123456788899999999999999999999999999887543211 0
Q ss_pred ----------EEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhcc
Q psy1308 406 ----------TIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHF 475 (607)
Q Consensus 406 ----------~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 475 (607)
.--..++++|++|+...+. .
T Consensus 218 ~~~~~~~~~~~~~~~d~rlI~ATt~~p~~--------------------------------------------------L 247 (531)
T TIGR02902 218 IPSHIHDIFQNGLPADFRLIGATTRNPEE--------------------------------------------------I 247 (531)
T ss_pred cccchhhhcccCcccceEEEEEecCCccc--------------------------------------------------C
Confidence 0012456777777633221 1
Q ss_pred CChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 476 RRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 476 ~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
+|.+.+|+. .+.|.|++.+|+..|++..+.. .+ +.+++++++.|.. |.| +.|++.+.++....
T Consensus 248 -~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k--------~~--i~is~~al~~I~~-y~~--n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 248 -PPALRSRCV-EIFFRPLLDEEIKEIAKNAAEK--------IG--INLEKHALELIVK-YAS--NGREAVNIVQLAAG 310 (531)
T ss_pred -ChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHH--------cC--CCcCHHHHHHHHH-hhh--hHHHHHHHHHHHHH
Confidence 277888884 5789999999999998876643 12 5689999998886 877 67999999987643
No 118
>KOG0195|consensus
Probab=99.67 E-value=1.8e-16 Score=146.97 Aligned_cols=135 Identities=22% Similarity=0.152 Sum_probs=114.5
Q ss_pred chhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchH
Q psy1308 78 TLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTV 155 (607)
Q Consensus 78 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l 155 (607)
.++..|..|.+|||+||+.|+..+|+.||..| +.+|..+....||||+|+..||.++|..|++..+|+|..+. +|||
T Consensus 26 dln~gddhgfsplhwaakegh~aivemll~rg-arvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntpl 104 (448)
T KOG0195|consen 26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRG-ARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPL 104 (448)
T ss_pred ccccccccCcchhhhhhhcccHHHHHHHHhcc-cccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCch
Confidence 45678899999999999999999999999999 99999999999999999999999999999999999999765 6799
Q ss_pred HHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCcc
Q psy1308 156 HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218 (607)
Q Consensus 156 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 218 (607)
||||..|...+++-|+..|+.++..+.. |.|||-.|--.-...+.+.--++|-++|..
T Consensus 105 hyacfwgydqiaedli~~ga~v~icnk~-----g~tpldkakp~l~~~l~e~aek~gq~~nri 162 (448)
T KOG0195|consen 105 HYACFWGYDQIAEDLISCGAAVNICNKK-----GMTPLDKAKPMLKNTLLEIAEKHGQSPNRI 162 (448)
T ss_pred hhhhhhcHHHHHHHHHhccceeeecccC-----CCCchhhhchHHHHHHHHHHHHhCCCCCcc
Confidence 9999999999999999999999988554 999998874322222222222467776643
No 119
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.67 E-value=3.4e-16 Score=127.58 Aligned_cols=64 Identities=38% Similarity=0.523 Sum_probs=59.6
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD 150 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d 150 (607)
|.||||+||..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 889999999999999999999999 9999999999999999999999999999999999999865
No 120
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.64 E-value=1.3e-15 Score=132.30 Aligned_cols=123 Identities=37% Similarity=0.500 Sum_probs=78.1
Q ss_pred cCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHc
Q psy1308 82 CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAE 161 (607)
Q Consensus 82 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~ 161 (607)
.+..|.||||+|+..|+.+++++|++.+ .+.+.++..|.||||+|+..++.+++++|++.|++++..+.
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~-~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~---------- 71 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK---------- 71 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC----------
Confidence 3466777777777777777777777777 66677777777777777777777777777777765554432
Q ss_pred CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHH
Q psy1308 162 KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241 (607)
Q Consensus 162 ~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~l 241 (607)
.|.||+|+|+..++.+++++|+++|.+++..+..|.||+++|...++.+++++|
T Consensus 72 --------------------------~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 72 --------------------------DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred --------------------------CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence 144555555555555555555555555555555555555555555555544443
No 121
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.64 E-value=2.6e-15 Score=130.34 Aligned_cols=89 Identities=33% Similarity=0.353 Sum_probs=75.2
Q ss_pred cccCChHHHHHHccCcc----------chhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHc
Q psy1308 61 TCMYNNLLFASACSLAL----------TLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAIN 130 (607)
Q Consensus 61 ~~~~~~l~~a~~~~~~~----------~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 130 (607)
..+.++++.+...+... .....+..|.||||.|+..++.+++++|++.+ .+++..+..|.||+|+|+..
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~~ 83 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARN 83 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHc
Confidence 45678888876554432 23577889999999999999999999999998 78999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCC
Q psy1308 131 GKVDNVRVLLEAGANPNLGD 150 (607)
Q Consensus 131 g~~~~v~~Ll~~ga~~~~~d 150 (607)
++.+++++|+++|.+++..+
T Consensus 84 ~~~~~~~~L~~~~~~~~~~~ 103 (126)
T cd00204 84 GNLDVVKLLLKHGADVNARD 103 (126)
T ss_pred CcHHHHHHHHHcCCCCcccC
Confidence 99999999999986666544
No 122
>KOG4214|consensus
Probab=99.61 E-value=2e-15 Score=115.99 Aligned_cols=109 Identities=30% Similarity=0.426 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHH
Q psy1308 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFE 168 (607)
Q Consensus 89 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~ 168 (607)
-+.+++++|.++-|+..+..+ .++|..- .|+||||+|+-.|..+++++|+..||+++.+
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g-~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~k------------------- 63 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEG-LNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDK------------------- 63 (117)
T ss_pred hHhhhhccCcHHHHHHHHHcc-ccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCc-------------------
Confidence 355666666666666666655 5555443 5566666666666666666666666665554
Q ss_pred HHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHH
Q psy1308 169 VLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIK 235 (607)
Q Consensus 169 ~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~ 235 (607)
|.+|-|||..|+..||.+||++||+.|||-..+..+|.+.+..+-.....
T Consensus 64 -----------------DKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate~edIr 113 (117)
T KOG4214|consen 64 -----------------DKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATEEEDIR 113 (117)
T ss_pred -----------------cccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhccHHHHH
Confidence 34499999999999999999999999999999998987776655444333
No 123
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.60 E-value=4.3e-14 Score=130.59 Aligned_cols=177 Identities=23% Similarity=0.336 Sum_probs=112.1
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKL 346 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~l 346 (607)
..++||+..+..+...+...... +.++ +++|+||||+|||.+|+.||+.+... |..+.........
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r----~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~----~~~~sg~~i~k~~----- 90 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKR----GEALDHMLFYGPPGLGKTTLARIIANELGVN----FKITSGPAIEKAG----- 90 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCT----TS---EEEEESSTTSSHHHHHHHHHHHCT------EEEEECCC--SCH-----
T ss_pred HHccCcHHHHhhhHHHHHHHHhc----CCCcceEEEECCCccchhHHHHHHHhccCCC----eEeccchhhhhHH-----
Confidence 46999999999987777655422 1245 89999999999999999999988543 6555543333222
Q ss_pred hcCCCCCccCCCCchhhHHHhh-CCCeEEEEecCCccCHHHHHHHHHhhccceeec--CCC-----cEEecCceEEEEec
Q psy1308 347 IGAPPGYLGHDDGGQLTKRLKK-CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD--GKG-----KTIECKDAIFVMTS 418 (607)
Q Consensus 347 lg~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~--~~g-----~~~~~~~~~iI~ts 418 (607)
++...+.. .++.|+|+|||+++++.+|+.|+..||++.+.- ..| ..++..+.-+|-+|
T Consensus 91 --------------dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 91 --------------DLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp --------------HHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred --------------HHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 33333322 356799999999999999999999999999743 333 23455566677766
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~ 498 (607)
+.. +.+ .+.|..||..+..+..++.+|+
T Consensus 157 Tr~---------------------------------------------------g~l-s~pLrdRFgi~~~l~~Y~~~el 184 (233)
T PF05496_consen 157 TRA---------------------------------------------------GLL-SSPLRDRFGIVLRLEFYSEEEL 184 (233)
T ss_dssp SSG---------------------------------------------------CCT-SHCCCTTSSEEEE----THHHH
T ss_pred ccc---------------------------------------------------ccc-chhHHhhcceecchhcCCHHHH
Confidence 610 112 2778899977778899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 499 HTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 499 ~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.+|+.+.-. -..+.+++++...|+.
T Consensus 185 ~~Iv~r~a~----------~l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 185 AKIVKRSAR----------ILNIEIDEDAAEEIAR 209 (233)
T ss_dssp HHHHHHCCH----------CTT-EE-HHHHHHHHH
T ss_pred HHHHHHHHH----------HhCCCcCHHHHHHHHH
Confidence 999764332 2356788999999985
No 124
>KOG3676|consensus
Probab=99.56 E-value=1.4e-14 Score=153.25 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=133.6
Q ss_pred CCcCCchHHHHHHh---cCChhHHHHHhcCCC-cccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHH
Q psy1308 26 KRGFQSSKLFYTTQ---STQADFKSCLSVFPK-IRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKE 101 (607)
Q Consensus 26 ~~~~g~t~L~~A~~---~g~~~~v~~L~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~ 101 (607)
-...|.|.||.|.- .++.+++..|+.... .++.. .......|.||||+|+.+.+.++
T Consensus 139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~-------------------~~~eeY~GqSaLHiAIv~~~~~~ 199 (782)
T KOG3676|consen 139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDI-------------------YTSEEYYGQSALHIAIVNRDAEL 199 (782)
T ss_pred ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhh-------------------hhhHhhcCcchHHHHHHhccHHH
Confidence 37889999999997 455577888876422 11110 01334679999999999999999
Q ss_pred HHHHHhcCCCCCccCC-----------------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHH
Q psy1308 102 LKTFIENSKLDVNMRH-----------------------PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVH 156 (607)
Q Consensus 102 v~~Ll~~~~~~~~~~d-----------------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~ 156 (607)
|++|++.| +|++++- ..|..||.+||..++.+|+++|+++|||++.+|. +|.||
T Consensus 200 V~lLl~~g-ADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH 278 (782)
T KOG3676|consen 200 VRLLLAAG-ADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLH 278 (782)
T ss_pred HHHHHHcC-CchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHH
Confidence 99999999 9998641 2478999999999999999999999999999987 55999
Q ss_pred HHHHcCCccHHHHHHhcCCC--ccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhc
Q psy1308 157 RTAAEKKMNPFEVLLKREDE--FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS 211 (607)
Q Consensus 157 ~A~~~~~~~~~~~Ll~~g~~--~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 211 (607)
..+..-..+|-.+++++|++ .... +.+|.|||.+||..|..++.+.+++.
T Consensus 279 ~lVi~~~~~My~~~L~~ga~~l~~v~-----N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 279 MLVIHFVTEMYDLALELGANALEHVR-----NNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccc-----ccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 99999999999999999999 3333 44599999999999999999999987
No 125
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.55 E-value=4.2e-14 Score=136.69 Aligned_cols=130 Identities=33% Similarity=0.484 Sum_probs=93.3
Q ss_pred cCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCchHH
Q psy1308 82 CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGK-----VDNVRVLLEAGANPNLGDLFNTVH 156 (607)
Q Consensus 82 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~ga~~~~~d~~~~l~ 156 (607)
.+..+.+++|.|+..+...++++++..+ ++++.+|..|.||||+|+..++ .+++++|++.|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~----------- 136 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDKIVKLLLASG-ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD----------- 136 (235)
T ss_pred CCccccCHHHHHHHcCcHHHHHHHHHcC-CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC-----------
Confidence 3444566666666666666666666666 6666666666666666666666 5555555555552
Q ss_pred HHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHH
Q psy1308 157 RTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236 (607)
Q Consensus 157 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~ 236 (607)
. +.+. ..|..|+||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.+
T Consensus 137 -----------------~-~~~~----~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~ 194 (235)
T COG0666 137 -----------------L-DVNN----LRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194 (235)
T ss_pred -----------------C-CCcc----ccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHH
Confidence 0 1111 12444999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy1308 237 ILQKYAEKY 245 (607)
Q Consensus 237 ~~~~ll~~~ 245 (607)
+++.++..+
T Consensus 195 ~~~~l~~~~ 203 (235)
T COG0666 195 LVKLLLDKG 203 (235)
T ss_pred HHHHHHhcC
Confidence 998888765
No 126
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.54 E-value=7.8e-14 Score=137.47 Aligned_cols=190 Identities=21% Similarity=0.275 Sum_probs=128.9
Q ss_pred hHhhhhHHHHHH---HHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 268 DRIVGQESAINI---ISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 268 ~~i~Gq~~ai~~---l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
..++||+..+.. +.+++.... ..+.+|+||||+|||.+|+.|+..... .|..++... .+-.++.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~--------l~SmIl~GPPG~GKTTlA~liA~~~~~----~f~~~sAv~-~gvkdlr 90 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGH--------LHSMILWGPPGTGKTTLARLIAGTTNA----AFEALSAVT-SGVKDLR 90 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCC--------CceeEEECCCCCCHHHHHHHHHHhhCC----ceEEecccc-ccHHHHH
Confidence 457888877743 333333222 237899999999999999999987744 377776533 2223333
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHH
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~ 424 (607)
+.+... ..........|||+|||++++...|+.||..+|+|. +++|-+|+-...
T Consensus 91 ~i~e~a------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~-------------iilIGATTENPs- 144 (436)
T COG2256 91 EIIEEA------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGT-------------IILIGATTENPS- 144 (436)
T ss_pred HHHHHH------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCe-------------EEEEeccCCCCC-
Confidence 333100 001111236899999999999999999999999886 346666651110
Q ss_pred HHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHH
Q psy1308 425 IAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCR 504 (607)
Q Consensus 425 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~ 504 (607)
| .. +|.+++|. .+..|.||+.+++.+++.+
T Consensus 145 -------------------------------------F-----------~l-n~ALlSR~-~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 145 -------------------------------------F-----------EL-NPALLSRA-RVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred -------------------------------------e-----------ee-cHHHhhhh-heeeeecCCHHHHHHHHHH
Confidence 0 01 38899998 7899999999999999998
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
.+....+.+. +..+.++++++++|+. ...+.+|..=+.+|-.
T Consensus 175 a~~~~~rgl~---~~~~~i~~~a~~~l~~--~s~GD~R~aLN~LE~~ 216 (436)
T COG2256 175 ALLDEERGLG---GQIIVLDEEALDYLVR--LSNGDARRALNLLELA 216 (436)
T ss_pred HHhhhhcCCC---cccccCCHHHHHHHHH--hcCchHHHHHHHHHHH
Confidence 6655444332 3457799999999984 2356788777777743
No 127
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.47 E-value=1.8e-13 Score=128.64 Aligned_cols=201 Identities=19% Similarity=0.297 Sum_probs=147.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccC--cCCceEEeecccccccchhHhhhcCCCC-CccCCCCchhhHHHhhCCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRD--KKEAFIRLDMSEYQEKHEVAKLIGAPPG-YLGHDDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~--~~~~~~~l~~a~~~~~~~~~~llg~~~g-~~g~~~~~~l~~~~~~~~~~vl~ 375 (607)
++++.||+|.||+.+++.+-+.-..+ -..+|+.++|+...+....+.+||+..| ++|... ...++++.+.+|.+|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~--~r~gllrsadggmlf 287 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARE--SREGLLRSADGGMLF 287 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchh--hhhhhhccCCCceEe
Confidence 58899999999999999988764221 2678999999999999999999999888 887643 345789999999999
Q ss_pred EecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 376 FDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 376 lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
+|||..+..+-|.+||+.+++.++..-+...-..++.-+|.-|.
T Consensus 288 ldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtv------------------------------------ 331 (531)
T COG4650 288 LDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTV------------------------------------ 331 (531)
T ss_pred hHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhH------------------------------------
Confidence 99999999999999999999988766432211122222333322
Q ss_pred hhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHH-HHH
Q psy1308 456 VTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVE-TIL 531 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~-~~L 531 (607)
.++-+....+.|+ .+++.||+--..-.| | .+++++.-++.+|.+..+. .|-.+.+..++. .||
T Consensus 332 --------rdlrq~vaeg~fr-edl~arinlwtf~lpgl~qr~ediepnldyelerha~~----~g~~vrfntearra~l 398 (531)
T COG4650 332 --------RDLRQLVAEGKFR-EDLYARINLWTFTLPGLRQRQEDIEPNLDYELERHASL----TGDSVRFNTEARRAWL 398 (531)
T ss_pred --------HHHHHHHhccchH-HHHHHhhheeeeeccccccCccccCCCccHHHHHHHHh----hCceeeeehHHHHHHH
Confidence 1222233456787 999999976433334 3 6678887788888765543 466788877775 456
Q ss_pred H---c-cCCCCCCccchhHHHHH
Q psy1308 532 A---D-GYDVHYGARSIKHEVER 550 (607)
Q Consensus 532 ~---~-~~~~~~GaR~L~~~i~~ 550 (607)
. . ...|.+|.|+|...|.+
T Consensus 399 ~fa~spqa~w~gnfrelsasvtr 421 (531)
T COG4650 399 AFATSPQATWRGNFRELSASVTR 421 (531)
T ss_pred HhccCcchhhcccHHHHhHHHHH
Confidence 4 2 45799999999877765
No 128
>KOG1710|consensus
Probab=99.45 E-value=2.4e-13 Score=126.45 Aligned_cols=122 Identities=24% Similarity=0.313 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCc
Q psy1308 85 IKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKM 164 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~ 164 (607)
.-..||.-+...|+.+....||+.- -++|.+|..|.|||..|+..|+.++|++|++.|+|+|...
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs~v-r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~q-------------- 75 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLSTV-RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQ-------------- 75 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHHHh-hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccc--------------
Confidence 4468999999999999999999875 6799999999999999999999999999999999999742
Q ss_pred cHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHH
Q psy1308 165 NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYA 242 (607)
Q Consensus 165 ~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll 242 (607)
+..+.||||.|+..|+.++..+|++.|+.+...|.-|+|+-.+|+.-|+.++|..+-
T Consensus 76 ---------------------hg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN 132 (396)
T KOG1710|consen 76 ---------------------HGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN 132 (396)
T ss_pred ---------------------ccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence 122788888888888888888888888888888888888888888888888886543
No 129
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=126.11 Aligned_cols=129 Identities=31% Similarity=0.313 Sum_probs=107.3
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCC-----
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGS----- 98 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~----- 98 (607)
...+..+.+++|+|+..+..+++.+++..+... +..+..|.||||+|+..|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~g~t~l~~a~~~~~~~~~~ 123 (235)
T COG0666 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-----------------------NAKDADGDTPLHLAALNGNPPEGN 123 (235)
T ss_pred ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-----------------------ccccCCCCcHHHHHHhcCCcccch
Confidence 345566889999999999999998887765444 3678899999999999999
Q ss_pred HHHHHHHHhcCCC---CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCC
Q psy1308 99 AKELKTFIENSKL---DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKRED 175 (607)
Q Consensus 99 ~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~ 175 (607)
.++++.|++.+ + +.+.+|..|.||||+|+..|+.+++++|++.|++++..+.
T Consensus 124 ~~~~~~ll~~g-~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~------------------------ 178 (235)
T COG0666 124 IEVAKLLLEAG-ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS------------------------ 178 (235)
T ss_pred HHHHHHHHHcC-CCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCccccc------------------------
Confidence 99999999999 6 6777799999999999999999999999999999887632
Q ss_pred CccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcC
Q psy1308 176 EFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212 (607)
Q Consensus 176 ~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 212 (607)
.|.|++++|+..++.++++.+++.+
T Consensus 179 ------------~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 179 ------------YGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred ------------CCCcchhhhcccchHHHHHHHHhcC
Confidence 2666666666666666666666654
No 130
>KOG4214|consensus
Probab=99.43 E-value=6.3e-13 Score=102.32 Aligned_cols=94 Identities=21% Similarity=0.194 Sum_probs=82.0
Q ss_pred hHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCC
Q psy1308 32 SKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKL 111 (607)
Q Consensus 32 t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 111 (607)
--++|++++|.+|-|+.....+..++ ....|++|||+||-.|.++++++|+..| +
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~nVn------------------------~~~ggR~plhyAAD~GQl~ilefli~iG-A 58 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLNVN------------------------EIYGGRTPLHYAADYGQLSILEFLISIG-A 58 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccccHH------------------------HHhCCcccchHhhhcchHHHHHHHHHhc-c
Confidence 45789999999999998866553222 2247899999999999999999999999 9
Q ss_pred CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy1308 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD 150 (607)
Q Consensus 112 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d 150 (607)
+++.+|++|-|||.-|+..||.+||++|++.|||-..+.
T Consensus 59 ~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~ 97 (117)
T KOG4214|consen 59 NIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHA 97 (117)
T ss_pred ccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeC
Confidence 999999999999999999999999999999999976643
No 131
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.41 E-value=4.4e-13 Score=97.55 Aligned_cols=54 Identities=41% Similarity=0.556 Sum_probs=45.9
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL 140 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 140 (607)
|.||||+||..|+.+++++|++++ .++|.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 689999999999999999999998 999999999999999999999999999986
No 132
>KOG0515|consensus
Probab=99.40 E-value=8.8e-13 Score=131.93 Aligned_cols=118 Identities=26% Similarity=0.293 Sum_probs=93.0
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHH
Q psy1308 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEV 169 (607)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~ 169 (607)
|.-|+..|-+++|+..+..- -|+...+..|-||||-|+..||.+||++|++.|+++|..|
T Consensus 554 LLDaaLeGEldlVq~~i~ev-~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~D------------------- 613 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEV-TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAAD------------------- 613 (752)
T ss_pred HHhhhhcchHHHHHHHHHhh-cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCcc-------------------
Confidence 56677888888888888776 6777788888888888888888888888888888887654
Q ss_pred HHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccC-CCCCCCCcchh--hhhHHHHHHHHHHh
Q psy1308 170 LLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKD-NSGHIPSDYAE--DANIKQILQKYAEK 244 (607)
Q Consensus 170 Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~Tpl~~A~--~~~~~~~~~~ll~~ 244 (607)
.+||||||+|+.++++.+++.|++.|+-+-+.. .++.||..-+- +.|...|.++|-.-
T Consensus 614 -----------------SdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v 674 (752)
T KOG0515|consen 614 -----------------SDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV 674 (752)
T ss_pred -----------------CCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence 349999999999999999999999998776543 56778777654 34777777777543
No 133
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.5e-12 Score=120.91 Aligned_cols=163 Identities=26% Similarity=0.346 Sum_probs=114.8
Q ss_pred HhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 269 RIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.+-|-+..++.+.+.+.-. ..|.. .|--++++||||||||.|||++|..... .|+++--|++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLAkAVA~~T~A----tFIrvvgSEl--- 221 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLAKAVANQTDA----TFIRVVGSEL--- 221 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHHHHHHhccCc----eEEEeccHHH---
Confidence 4566777777777766432 23332 3457899999999999999999987644 4888887665
Q ss_pred chhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEec
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
+.+++|..+.. -..+....+....+||||||||.. +.+||..+++++.+-.=.|. .
T Consensus 222 --VqKYiGEGaRl-----VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~------~ 288 (406)
T COG1222 222 --VQKYIGEGARL-----VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP------R 288 (406)
T ss_pred --HHHHhccchHH-----HHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC------C
Confidence 78888843322 235667777778999999999873 67899999999975433333 3
Q ss_pred CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceee
Q psy1308 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVY 489 (607)
Q Consensus 410 ~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~ 489 (607)
.|+-+||+||.. +.+.++| +| | +|||..|.
T Consensus 289 ~nvKVI~ATNR~-------------------------------------------D~LDPAL---LR-P---GR~DRkIE 318 (406)
T COG1222 289 GNVKVIMATNRP-------------------------------------------DILDPAL---LR-P---GRFDRKIE 318 (406)
T ss_pred CCeEEEEecCCc-------------------------------------------cccChhh---cC-C---Ccccceee
Confidence 577899999921 1222222 22 4 58999999
Q ss_pred eccCCHHHHHHHHHH
Q psy1308 490 FLPFSKSELHTLVCR 504 (607)
Q Consensus 490 f~pl~~~~~~~i~~~ 504 (607)
|...+.+.-.+|++.
T Consensus 319 fplPd~~gR~~Il~I 333 (406)
T COG1222 319 FPLPDEEGRAEILKI 333 (406)
T ss_pred cCCCCHHHHHHHHHH
Confidence 988888777777553
No 134
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.38 E-value=9.3e-12 Score=136.30 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=136.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccC------cCCceEEeecccccccc-
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRD------KKEAFIRLDMSEYQEKH- 341 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~------~~~~~~~l~~a~~~~~~- 341 (607)
.++||+.++..+...+.. ..|.+++|+||+|+|||.+++.++...... ...+|+.++++.+....
T Consensus 155 ~iiGqs~~~~~l~~~ia~--------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS--------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred hceeCcHHHHHHHHHHhc--------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 588999999876554421 124479999999999999999999876321 14579999988764211
Q ss_pred hh-HhhhcCCCC--CccC-------CCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCc------
Q psy1308 342 EV-AKLIGAPPG--YLGH-------DDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGK------ 405 (607)
Q Consensus 342 ~~-~~llg~~~g--~~g~-------~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~------ 405 (607)
.+ ..++|.... +.+. .......+.+..+.+|+|||||++.+++..|..|+++++++.+....+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 11 234443210 1110 0011223445667789999999999999999999999998875432210
Q ss_pred E-----------EecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhc
Q psy1308 406 T-----------IECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRH 474 (607)
Q Consensus 406 ~-----------~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 474 (607)
. ....++++|.+|+.....
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~-------------------------------------------------- 336 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEE-------------------------------------------------- 336 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccc--------------------------------------------------
Confidence 0 012345566555521111
Q ss_pred cCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 475 FRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 475 f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
+. |.|.+|+. .+.|.|++.+++..|+...+.. .+ +.+++++++.|.. |+|++ |..-+.++...
T Consensus 337 l~-~aLrSR~~-~i~~~pls~edi~~Il~~~a~~--------~~--v~ls~eal~~L~~-ys~~g--Rraln~L~~~~ 399 (615)
T TIGR02903 337 IN-PALRSRCA-EVFFEPLTPEDIALIVLNAAEK--------IN--VHLAAGVEELIAR-YTIEG--RKAVNILADVY 399 (615)
T ss_pred cC-HHHHhcee-EEEeCCCCHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-CCCcH--HHHHHHHHHHH
Confidence 11 66778885 5689999999999999886652 12 3578999999986 88843 44445665543
No 135
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.38 E-value=1.7e-13 Score=100.29 Aligned_cols=55 Identities=42% Similarity=0.697 Sum_probs=31.7
Q ss_pred HHhcC-CCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcch
Q psy1308 170 LLKRE-DEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229 (607)
Q Consensus 170 Ll~~g-~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A 229 (607)
||++| ++++.. |..|.||||+||..|+.+++++|++.|+|++.+|..|+||+|+|
T Consensus 1 LL~~~~~~~n~~-----d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQ-----DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT--------TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCc-----CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45666 566655 44599999999999999999999999999999999999999987
No 136
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.38 E-value=2.4e-12 Score=102.26 Aligned_cols=80 Identities=30% Similarity=0.482 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEE
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFV 571 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v 571 (607)
|+.+++..|+..++.++.+++.+ +|+++.++++++++|++ +|++.+|||+|++.|++.+.+++++.++.+.+.+|++|
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~-~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v 79 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKE-KGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTV 79 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHH-TTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-CCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEe
Confidence 57899999999999999999988 79999999999999987 89999999999999999999999999999999999999
Q ss_pred EE
Q psy1308 572 RL 573 (607)
Q Consensus 572 ~i 573 (607)
+|
T Consensus 80 ~v 81 (81)
T PF10431_consen 80 RV 81 (81)
T ss_dssp EE
T ss_pred eC
Confidence 86
No 137
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.37 E-value=1.6e-11 Score=129.33 Aligned_cols=185 Identities=19% Similarity=0.275 Sum_probs=127.4
Q ss_pred HhhhhHHHHHH---HHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHh
Q psy1308 269 RIVGQESAINI---ISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345 (607)
Q Consensus 269 ~i~Gq~~ai~~---l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ 345 (607)
.++||+..+.. +...+... ++.+++|+||+|+|||.+++.+++.... .|..++.+... ...+..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~--------~~~~ilL~GppGtGKTtLA~~ia~~~~~----~~~~l~a~~~~-~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG--------RLSSMILWGPPGTGKTTLARIIAGATDA----PFEALSAVTSG-VKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC--------CCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEeccccc-HHHHHH
Confidence 58899988766 55555322 1337889999999999999999987743 47777765321 112222
Q ss_pred hhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 346 LIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 346 llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
++.. .........+.+||||||++++...|+.|+..++++. +++|.+|+....
T Consensus 80 ii~~------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------iilI~att~n~~-- 132 (413)
T PRK13342 80 VIEE------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTENPS-- 132 (413)
T ss_pred HHHH------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------EEEEEeCCCChh--
Confidence 2210 0000112256899999999999999999999998643 345555441110
Q ss_pred HHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHH
Q psy1308 426 AQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRE 505 (607)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~ 505 (607)
..+. +.+.+|+ .++.|.|++.+++..++...
T Consensus 133 -----------------------------------------------~~l~-~aL~SR~-~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 133 -----------------------------------------------FEVN-PALLSRA-QVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred -----------------------------------------------hhcc-HHHhccc-eeeEeCCCCHHHHHHHHHHH
Confidence 0022 7888998 67899999999999998887
Q ss_pred HHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 506 LNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 506 l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+.... . ++ +.+++++++.|+. +. .++.|.+.+.++..
T Consensus 164 l~~~~-----~-~~-i~i~~~al~~l~~-~s-~Gd~R~aln~Le~~ 200 (413)
T PRK13342 164 LEDKE-----R-GL-VELDDEALDALAR-LA-NGDARRALNLLELA 200 (413)
T ss_pred HHHhh-----c-CC-CCCCHHHHHHHHH-hC-CCCHHHHHHHHHHH
Confidence 65431 1 33 5789999999986 54 68899999988875
No 138
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.36 E-value=1.9e-11 Score=134.94 Aligned_cols=191 Identities=21% Similarity=0.306 Sum_probs=127.6
Q ss_pred hHhhhhHHHHH---HHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 268 DRIVGQESAIN---IISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 268 ~~i~Gq~~ai~---~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
..++||+..+. .+...+... +..+++|+||+|+|||.+++.+++... ..|..++++... -..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--------~~~slLL~GPpGtGKTTLA~aIA~~~~----~~f~~lna~~~~-i~dir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--------RVGSLILYGPPGVGKTTLARIIANHTR----AHFSSLNAVLAG-VKDLR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--------CCceEEEECCCCCCHHHHHHHHHHHhc----Ccceeehhhhhh-hHHHH
Confidence 35789998885 333443321 123789999999999999999998763 346666654321 11111
Q ss_pred hhhcCCCCCccCCCCchhhHHHh-hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchH
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLK-KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASN 423 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~-~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~ 423 (607)
..+. .....+. .....++|||||+.++...|+.|+..+++|. +++|.+|+....
T Consensus 95 ~~i~------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI~aTTenp~ 149 (725)
T PRK13341 95 AEVD------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLIGATTENPY 149 (725)
T ss_pred HHHH------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEEEecCCChH
Confidence 1111 0001111 1235799999999999999999999998653 346665542110
Q ss_pred HHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHH
Q psy1308 424 EIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVC 503 (607)
Q Consensus 424 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~ 503 (607)
. .+ .+.+.+|. .++.|.|++.+++..++.
T Consensus 150 ~-------------------------------------------------~l-~~aL~SR~-~v~~l~pLs~edi~~IL~ 178 (725)
T PRK13341 150 F-------------------------------------------------EV-NKALVSRS-RLFRLKSLSDEDLHQLLK 178 (725)
T ss_pred h-------------------------------------------------hh-hhHhhccc-cceecCCCCHHHHHHHHH
Confidence 0 01 15677775 568899999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 504 RELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 504 ~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
..+......+.. -.+.++++++++|+. +. ++++|.+.+.++..+
T Consensus 179 ~~l~~~~~~~g~---~~v~I~deaL~~La~-~s-~GD~R~lln~Le~a~ 222 (725)
T PRK13341 179 RALQDKERGYGD---RKVDLEPEAEKHLVD-VA-NGDARSLLNALELAV 222 (725)
T ss_pred HHHHHHHhhcCC---cccCCCHHHHHHHHH-hC-CCCHHHHHHHHHHHH
Confidence 888764433321 257889999999996 55 789999999998755
No 139
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.35 E-value=7.1e-13 Score=96.45 Aligned_cols=54 Identities=35% Similarity=0.580 Sum_probs=40.3
Q ss_pred CcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHH
Q psy1308 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYA 242 (607)
Q Consensus 189 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll 242 (607)
|+||||+||..|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 678888888888888888888888888888888888888888888888888775
No 140
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.9e-11 Score=126.97 Aligned_cols=197 Identities=19% Similarity=0.262 Sum_probs=125.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++||+.++..+..++..... +-.++|+||+|+|||.+|+.+++.++........+ |.... ....+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri-------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p--Cg~C~---sC~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKI-------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP--CNECT---SCLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc--cCCCc---HHHHHH
Confidence 4689999999998888765432 22589999999999999999999986531111111 11000 011111
Q ss_pred -cCC-------C-CCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 348 -GAP-------P-GYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 348 -g~~-------~-g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
|.. + ...|.+.-..+.+.+.. ..+.|++|||++.++.+.++.||+.+|+. ..+++|
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-----------p~~viF 154 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-----------PAHIVF 154 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-----------CCceEE
Confidence 000 0 01111111112222222 23569999999999999999999999852 257889
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++|+.. . .+. +-+.+|+ ..+.|.|++
T Consensus 155 ILaTte~-~--------------------------------------------------kI~-~TI~SRC-q~~~f~~ls 181 (484)
T PRK14956 155 ILATTEF-H--------------------------------------------------KIP-ETILSRC-QDFIFKKVP 181 (484)
T ss_pred EeecCCh-h--------------------------------------------------hcc-HHHHhhh-heeeecCCC
Confidence 9988821 0 122 7788888 568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
.+++.+.+...+.. .| +.++++++..|++ + ..++.|..-+.+++.+
T Consensus 182 ~~~i~~~L~~i~~~--------Eg--i~~e~eAL~~Ia~-~-S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 182 LSVLQDYSEKLCKI--------EN--VQYDQEGLFWIAK-K-GDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCChHHHHHHHHHHHH
Confidence 99888776554431 23 5689999999985 2 2466676666666543
No 141
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.32 E-value=1.9e-11 Score=120.47 Aligned_cols=113 Identities=24% Similarity=0.346 Sum_probs=79.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCC--------------------C
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHD--------------------D 358 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~--------------------~ 358 (607)
++++.||+|+|||.+|+.+|..+ ..++..++|... .....++|...+|.... .
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~~~~~---~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR----DRPVMLINGDAE---LTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEeCCcc---CCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 57899999999999999999866 346999988763 23456666433322110 0
Q ss_pred CchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCC----cEE-ecCceEEEEecCc
Q psy1308 359 GGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKG----KTI-ECKDAIFVMTSNL 420 (607)
Q Consensus 359 ~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g----~~~-~~~~~~iI~tsn~ 420 (607)
.+.+..++ ..+++++||||+++++++|+.|+++++++.++..++ ..+ .-.+.++|+|+|.
T Consensus 96 ~g~l~~A~--~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 96 DNRLTLAV--REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred CchHHHHH--HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 12333322 346799999999999999999999999998776542 122 2247789999994
No 142
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.31 E-value=4.3e-11 Score=123.80 Aligned_cols=139 Identities=25% Similarity=0.338 Sum_probs=95.7
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.+...+.+.++|++..++.+..++.... ++++.||||+|||.+|+.++...... .+|..+.+....
T Consensus 13 ~l~~~l~~~i~gre~vI~lll~aalag~----------hVLL~GpPGTGKT~LAraLa~~~~~~--~~F~~~~~~ftt-- 78 (498)
T PRK13531 13 RLSSALEKGLYERSHAIRLCLLAALSGE----------SVFLLGPPGIAKSLIARRLKFAFQNA--RAFEYLMTRFST-- 78 (498)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHccCC----------CEEEECCCChhHHHHHHHHHHHhccc--CcceeeeeeecC--
Confidence 4667788899999999998877764332 68999999999999999999987553 256655554221
Q ss_pred chhHhhhcCCCCCccCCCCchh----hHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEE
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQL----TKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVM 416 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l----~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ 416 (607)
...++|...-+... ..+.+ .+.+..+ .++|+|||.++++.+|+.||++++++.++. +|.+....--+|+.
T Consensus 79 --p~DLfG~l~i~~~~-~~g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~rfiv~ 152 (498)
T PRK13531 79 --PEEVFGPLSIQALK-DEGRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPMRLLVT 152 (498)
T ss_pred --cHHhcCcHHHhhhh-hcCchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCCcEEEE
Confidence 24666642000000 00111 1112222 299999999999999999999999999987 56666655556666
Q ss_pred ecC
Q psy1308 417 TSN 419 (607)
Q Consensus 417 tsn 419 (607)
+||
T Consensus 153 ATN 155 (498)
T PRK13531 153 ASN 155 (498)
T ss_pred ECC
Confidence 776
No 143
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=3.7e-11 Score=129.32 Aligned_cols=193 Identities=17% Similarity=0.248 Sum_probs=120.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc------cccccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS------EYQEKH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a------~~~~~~ 341 (607)
..++||+..++.+...+..... +-.++|+|++|+|||.+++.+++.++.... .....|. .+....
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL-------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~--~~~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL-------HHAYLFTGTRGVGKTTLSRIFAKALNCETG--VTSQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC-------CeEEEEECCCCCCHHHHHHHHHHHhcCccC--CCCCCCcccHHHHHHhcCC
Confidence 4699999999999888764321 225789999999999999999999865311 1111111 110000
Q ss_pred hhHhhhcCCCC-CccCCCCchhhHHHhh-------CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 342 EVAKLIGAPPG-YLGHDDGGQLTKRLKK-------CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 342 ~~~~llg~~~g-~~g~~~~~~l~~~~~~-------~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
...++.-... ..|. ..+..+++. ..+.|+||||+|+++...++.||+.||+. ..+++
T Consensus 87 -h~DviEIDAas~rgV---DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-----------P~~v~ 151 (830)
T PRK07003 87 -FVDYVEMDAASNRGV---DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PPHVK 151 (830)
T ss_pred -CceEEEecccccccH---HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-----------CCCeE
Confidence 0001100000 0111 122222222 34679999999999999999999999953 25788
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl 493 (607)
||++||-.. .+. +-+++|+ ..+.|.++
T Consensus 152 FILaTtd~~---------------------------------------------------KIp-~TIrSRC-q~f~Fk~L 178 (830)
T PRK07003 152 FILATTDPQ---------------------------------------------------KIP-VTVLSRC-LQFNLKQM 178 (830)
T ss_pred EEEEECChh---------------------------------------------------hcc-chhhhhe-EEEecCCc
Confidence 999988211 122 6788888 67899999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHH
Q psy1308 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVE 549 (607)
Q Consensus 494 ~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~ 549 (607)
+.+++.+.+...+.. . .+.++++++..|++ . ..+..|..-+.++
T Consensus 179 s~eeIv~~L~~Il~~--------E--gI~id~eAL~lIA~-~-A~GsmRdALsLLd 222 (830)
T PRK07003 179 PAGHIVSHLERILGE--------E--RIAFEPQALRLLAR-A-AQGSMRDALSLTD 222 (830)
T ss_pred CHHHHHHHHHHHHHH--------c--CCCCCHHHHHHHHH-H-cCCCHHHHHHHHH
Confidence 999998887665531 1 24678888888874 1 1344454444443
No 144
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.30 E-value=8.2e-11 Score=119.39 Aligned_cols=193 Identities=20% Similarity=0.257 Sum_probs=125.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++||+..++.+...+...... +..+.+++|+||+|+|||.+++.+++.+... +...+.+......
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~---~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~----~~~~~~~~~~~~~------ 70 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR---QEALDHLLLYGPPGLGKTTLAHIIANEMGVN----LKITSGPALEKPG------ 70 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHhCCC----EEEeccchhcCch------
Confidence 46899999999988877644322 1234478999999999999999999887432 3333322221111
Q ss_pred cCCCCCccCCCCchhhHHHhh-CCCeEEEEecCCccCHHHHHHHHHhhccceeec--CCC-----cEEecCceEEEEecC
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKK-CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD--GKG-----KTIECKDAIFVMTSN 419 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~--~~g-----~~~~~~~~~iI~tsn 419 (607)
.+...+.. ....++|||||+.+++..+..|+.++++....- ..+ .........+|.+||
T Consensus 71 -------------~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~ 137 (305)
T TIGR00635 71 -------------DLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT 137 (305)
T ss_pred -------------hHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence 12222222 235799999999999999999999998665321 111 112223355666655
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
.. ..+. +.+.+|+..++.|.|++.+++.
T Consensus 138 ~~---------------------------------------------------~~l~-~~l~sR~~~~~~l~~l~~~e~~ 165 (305)
T TIGR00635 138 RA---------------------------------------------------GMLT-SPLRDRFGIILRLEFYTVEELA 165 (305)
T ss_pred Cc---------------------------------------------------cccC-HHHHhhcceEEEeCCCCHHHHH
Confidence 21 0122 6788899888899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 500 ~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
+++...... ..+.++++++++|++ . ..+..|.+.+.+++
T Consensus 166 ~il~~~~~~----------~~~~~~~~al~~ia~-~-~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 166 EIVSRSAGL----------LNVEIEPEAALEIAR-R-SRGTPRIANRLLRR 204 (305)
T ss_pred HHHHHHHHH----------hCCCcCHHHHHHHHH-H-hCCCcchHHHHHHH
Confidence 998755541 134689999999985 2 22344666555554
No 145
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.29 E-value=3.4e-12 Score=93.33 Aligned_cols=47 Identities=45% Similarity=0.647 Sum_probs=20.1
Q ss_pred HHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy1308 105 FIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL 151 (607)
Q Consensus 105 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 151 (607)
||++++.++|.+|..|.||||+||..|+.++|++|++.|+|++.+|.
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~ 47 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK 47 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC
Confidence 45555566677777777777777777777777777766777666543
No 146
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.27 E-value=1e-10 Score=119.57 Aligned_cols=193 Identities=19% Similarity=0.244 Sum_probs=126.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++||+..++.+...+...... ...+.+++|+||+|+|||.+++.+++.+... +............
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~---~~~~~~~ll~GppG~GKT~la~~ia~~l~~~----~~~~~~~~~~~~~------ 91 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR---GEALDHVLLYGPPGLGKTTLANIIANEMGVN----IRITSGPALEKPG------ 91 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc---CCCCCcEEEECCCCccHHHHHHHHHHHhCCC----eEEEecccccChH------
Confidence 46899999999988777654321 1123378999999999999999999987432 3333322221111
Q ss_pred cCCCCCccCCCCchhhHHHhh-CCCeEEEEecCCccCHHHHHHHHHhhccceeec--CCCc-----EEecCceEEEEecC
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKK-CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD--GKGK-----TIECKDAIFVMTSN 419 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~--~~g~-----~~~~~~~~iI~tsn 419 (607)
.+...+.. ..++++|||||+.+++..+..|...+++..+.. ..+. ........+|++|+
T Consensus 92 -------------~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~ 158 (328)
T PRK00080 92 -------------DLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT 158 (328)
T ss_pred -------------HHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC
Confidence 22222222 346899999999999999999999998665321 1111 11123356677766
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
... .+. +.+.+|+..++.|.|++.+++.
T Consensus 159 ~~~---------------------------------------------------~l~-~~L~sRf~~~~~l~~~~~~e~~ 186 (328)
T PRK00080 159 RAG---------------------------------------------------LLT-SPLRDRFGIVQRLEFYTVEELE 186 (328)
T ss_pred Ccc---------------------------------------------------cCC-HHHHHhcCeeeecCCCCHHHHH
Confidence 210 122 6688899888999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 500 ~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
+|+...... ..+.++++++++|++ . ..+..|.+.+.+++
T Consensus 187 ~il~~~~~~----------~~~~~~~~~~~~ia~-~-~~G~pR~a~~~l~~ 225 (328)
T PRK00080 187 KIVKRSARI----------LGVEIDEEGALEIAR-R-SRGTPRIANRLLRR 225 (328)
T ss_pred HHHHHHHHH----------cCCCcCHHHHHHHHH-H-cCCCchHHHHHHHH
Confidence 998765542 135689999999985 1 12334666666654
No 147
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=9.1e-11 Score=125.13 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=121.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEe-ecccccc--cc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRL-DMSEYQE--KH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l-~~a~~~~--~~ 341 (607)
..++||+.+++.+..++..... +-.++|+||+|+|||.+|+.+|+.++... ..++-.. .|..... +.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl-------~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRL-------HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFI 87 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCC
Confidence 4699999999999888864431 23679999999999999999999986421 1110000 0000000 00
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHh---h----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLK---K----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~---~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
.+..+-++ ...+ ...+.+++. . ..+.|++|||++.+++..++.|++.+++. ..++.|
T Consensus 88 DviEIDAA--s~~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-----------P~~v~F 151 (702)
T PRK14960 88 DLIEIDAA--SRTK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-----------PEHVKF 151 (702)
T ss_pred ceEEeccc--ccCC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-----------CCCcEE
Confidence 00000000 0011 112222222 1 23579999999999999999999999953 245678
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++|+-... +. +.+++|+ .++.|.|++
T Consensus 152 ILaTtd~~k---------------------------------------------------Ip-~TIlSRC-q~feFkpLs 178 (702)
T PRK14960 152 LFATTDPQK---------------------------------------------------LP-ITVISRC-LQFTLRPLA 178 (702)
T ss_pred EEEECChHh---------------------------------------------------hh-HHHHHhh-heeeccCCC
Confidence 888762110 11 5566788 678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
.+++.+.+...+.. . .+.++++++..|+. . ..++.|..-+.+++
T Consensus 179 ~eEI~k~L~~Il~k-------E---gI~id~eAL~~IA~-~-S~GdLRdALnLLDQ 222 (702)
T PRK14960 179 VDEITKHLGAILEK-------E---QIAADQDAIWQIAE-S-AQGSLRDALSLTDQ 222 (702)
T ss_pred HHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHH-H-cCCCHHHHHHHHHH
Confidence 99998887766542 1 25688999988875 2 23556666555544
No 148
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.26 E-value=2e-10 Score=106.57 Aligned_cols=199 Identities=24% Similarity=0.316 Sum_probs=126.5
Q ss_pred hHhhhhHHHHHHHHHHHHHh-----hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRK-----ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~-----~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
..++||+.+.....-.+... ...|. |-.++|+||+|+|||.+||+++... +.||..+..+.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~----kvp~l~vkat~------ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEA----KVPLLLVKATE------ 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccC----cceeEEECCCCccHHHHHHHHhccc----CCceEEechHH------
Confidence 46999999987765444322 12233 7789999999999999999999654 55677776544
Q ss_pred hHhhhcCCCCCccCC--CCchhhHHHhhCCCeEEEEecCCccCH------------HHHHHHHHhhccceeecCCCcEEe
Q psy1308 343 VAKLIGAPPGYLGHD--DGGQLTKRLKKCPNAVVLFDEVDKAHP------------DVLTVLLQLFDEGRLTDGKGKTIE 408 (607)
Q Consensus 343 ~~~llg~~~g~~g~~--~~~~l~~~~~~~~~~vl~lDEiek~~~------------~~~~~Ll~~~~~~~~~~~~g~~~~ 408 (607)
|+|. |+|.. .-..+.+..+++..||+||||+|.+.. +++++||.-|+.-+ ..
T Consensus 187 ---liGe---hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--en------ 252 (368)
T COG1223 187 ---LIGE---HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--EN------ 252 (368)
T ss_pred ---HHHH---HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cC------
Confidence 4432 33321 122355566667799999999998643 47889998887322 11
Q ss_pred cCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccccee
Q psy1308 409 CKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIV 488 (607)
Q Consensus 409 ~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv 488 (607)
..+..|++||.. ++ + .|...+||..-|
T Consensus 253 -eGVvtIaaTN~p-------------------------------------------~~--------L-D~aiRsRFEeEI 279 (368)
T COG1223 253 -EGVVTIAATNRP-------------------------------------------EL--------L-DPAIRSRFEEEI 279 (368)
T ss_pred -CceEEEeecCCh-------------------------------------------hh--------c-CHHHHhhhhhee
Confidence 345689999921 11 1 166677887778
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHHh
Q psy1308 489 YFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEK 562 (607)
Q Consensus 489 ~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l~ 562 (607)
.|.-.+.+|...|++..+.. .-..+... ++++++ -...+..|.+ .++.+..+|-++|..
T Consensus 280 EF~LP~~eEr~~ile~y~k~--------~Plpv~~~---~~~~~~-~t~g~SgRdi---kekvlK~aLh~Ai~e 338 (368)
T COG1223 280 EFKLPNDEERLEILEYYAKK--------FPLPVDAD---LRYLAA-KTKGMSGRDI---KEKVLKTALHRAIAE 338 (368)
T ss_pred eeeCCChHHHHHHHHHHHHh--------CCCccccC---HHHHHH-HhCCCCchhH---HHHHHHHHHHHHHHh
Confidence 88888999999997776653 23333334 445543 2223334444 444455666666654
No 149
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=8.4e-11 Score=125.09 Aligned_cols=185 Identities=18% Similarity=0.268 Sum_probs=114.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEeecccccccchh-
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRLDMSEYQEKHEV- 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l~~a~~~~~~~~- 343 (607)
..++||+..++.+...+...+. +-.++|+|+.|+|||.+++.+++.++... ..+...--|.....-..+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL-------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL-------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC-------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHH
Confidence 4699999999999988875542 22579999999999999999999987521 111110011110000000
Q ss_pred ----HhhhcCCCC-CccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 344 ----AKLIGAPPG-YLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 344 ----~~llg~~~g-~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
..++.-... ..|.++-..+.+.+.. ..+.|+||||+|+++...++.||+.||+- ..+++|
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-----------P~~v~F 157 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PEHVKF 157 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-----------CCCceE
Confidence 011100000 1111111122222222 23679999999999999999999999963 257789
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++||... .+. +-+++|+ ..+.|.+++
T Consensus 158 ILaTtep~---------------------------------------------------kLl-pTIrSRC-q~f~f~~ls 184 (700)
T PRK12323 158 ILATTDPQ---------------------------------------------------KIP-VTVLSRC-LQFNLKQMP 184 (700)
T ss_pred EEEeCChH---------------------------------------------------hhh-hHHHHHH-HhcccCCCC
Confidence 99888211 122 6677888 678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.+++.+.+...+.. .+ +.+++++++.|++
T Consensus 185 ~eei~~~L~~Il~~--------Eg--i~~d~eAL~~IA~ 213 (700)
T PRK12323 185 PGHIVSHLDAILGE--------EG--IAHEVNALRLLAQ 213 (700)
T ss_pred hHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH
Confidence 99888876665532 12 3467777777653
No 150
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.25 E-value=1.2e-11 Score=109.49 Aligned_cols=113 Identities=22% Similarity=0.390 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCC
Q psy1308 271 VGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAP 350 (607)
Q Consensus 271 ~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~ 350 (607)
+|++.+++.+...+.+.... ..++++.|++|+||+.+|+.|+...... ..+|+.++|+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~------~~pvli~GE~GtGK~~~A~~lh~~~~~~-~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS------SSPVLITGEPGTGKSLLARALHRYSGRA-NGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS------SS-EEEECCTTSSHHHHHHCCHHTTTTC-CS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCC------CCcEEEEcCCCCCHHHHHHHHHhhcCcc-CCCeEEechhhCc------------
Confidence 47778888888888777643 3478999999999999999999987654 6678888887643
Q ss_pred CCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHH
Q psy1308 351 PGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424 (607)
Q Consensus 351 ~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~ 424 (607)
.+.++.+.+++++|+|||.++++.|..|+++++... ..++++|++|..+...
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~ 113 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEE 113 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCC
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHH
Confidence 234556788999999999999999999999998532 2467899999855443
No 151
>PLN03025 replication factor C subunit; Provisional
Probab=99.25 E-value=4.6e-11 Score=121.50 Aligned_cols=188 Identities=19% Similarity=0.219 Sum_probs=120.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~ll 347 (607)
.++||..++..+...+.... ..+++|+||+|+|||.+++.+++.++... ...+..++.+...+...+...+
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~--------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i 85 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGN--------MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKI 85 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCC--------CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHH
Confidence 57899998888766554221 12689999999999999999999986532 2335555554332222222221
Q ss_pred cCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
..... .. .........+++|||+|.++.+.|+.|++.++.. ..+++||+++|....
T Consensus 86 ~~~~~-----~~----~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-----------~~~t~~il~~n~~~~---- 141 (319)
T PLN03025 86 KMFAQ-----KK----VTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-----------SNTTRFALACNTSSK---- 141 (319)
T ss_pred HHHHh-----cc----ccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-----------cCCceEEEEeCCccc----
Confidence 10000 00 0000123579999999999999999999999842 134668888882110
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~ 507 (607)
+. +.+.+|. .++.|.|++.+++..++.....
T Consensus 142 -----------------------------------------------i~-~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 142 -----------------------------------------------II-EPIQSRC-AIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred -----------------------------------------------cc-hhHHHhh-hcccCCCCCHHHHHHHHHHHHH
Confidence 11 6678887 5789999999998887655442
Q ss_pred HHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHH
Q psy1308 508 FWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVE 549 (607)
Q Consensus 508 ~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~ 549 (607)
.+ | +.++++++++|+.. ..+..|.+-+.++
T Consensus 173 -------~e-g--i~i~~~~l~~i~~~--~~gDlR~aln~Lq 202 (319)
T PLN03025 173 -------AE-K--VPYVPEGLEAIIFT--ADGDMRQALNNLQ 202 (319)
T ss_pred -------Hc-C--CCCCHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 11 3 45789999999752 2456666666665
No 152
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.2e-10 Score=127.91 Aligned_cols=198 Identities=20% Similarity=0.278 Sum_probs=122.9
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHh--
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAK-- 345 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~-- 345 (607)
..++||+..+..+..++...+. |-.++|+||+|+|||.+++.+++.++.... ....-|........+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl-------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~--~~~~pCg~C~sC~~i~~g~ 86 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL-------HHAYLFTGTRGVGKTSLARLFAKGLNCEQG--VTATPCGVCSSCVEIAQGR 86 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC-------CeEEEEECCCCCCHHHHHHHHHHhccCccC--CCCCCCCCchHHHHHhcCC
Confidence 4689999999998888765431 224689999999999999999999865311 00001110000000000
Q ss_pred ---hhcCCCC-CccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 346 ---LIGAPPG-YLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 346 ---llg~~~g-~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
++-..+. ..+-+.-..+...+.. ..+.|+||||+++++.+.++.||+.||+. ..+++||++
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-----------P~~vrFILa 155 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-----------PEHVKFLLA 155 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-----------CCCeEEEEE
Confidence 0000000 1111111122222222 34679999999999999999999999963 256788888
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
|+-... +. +-+++|+ .++.|.|++.++
T Consensus 156 TTe~~k---------------------------------------------------Ll-~TIlSRC-q~f~fkpLs~eE 182 (944)
T PRK14949 156 TTDPQK---------------------------------------------------LP-VTVLSRC-LQFNLKSLTQDE 182 (944)
T ss_pred CCCchh---------------------------------------------------ch-HHHHHhh-eEEeCCCCCHHH
Confidence 772111 11 5677788 678999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
+...+.+.+.. . .+.+++++++.|++ + ..+..|-.-+.+++
T Consensus 183 I~~~L~~il~~-------E---gI~~edeAL~lIA~-~-S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 183 IGTQLNHILTQ-------E---QLPFEAEALTLLAK-A-ANGSMRDALSLTDQ 223 (944)
T ss_pred HHHHHHHHHHH-------c---CCCCCHHHHHHHHH-H-cCCCHHHHHHHHHH
Confidence 98887665542 1 25678999999875 2 24556655555543
No 153
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.6e-10 Score=123.29 Aligned_cols=201 Identities=18% Similarity=0.246 Sum_probs=125.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEe-ecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRL-DMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l-~~a~~~~~~~~ 343 (607)
..++||+.++..+...+..... +-.++|+||+|+|||.+|+.+++.++... ..++-.. .|...... ..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl-------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~-~~ 87 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKV-------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN-SF 87 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC-CC
Confidence 3689999999998888764421 23588999999999999999999886421 1111000 00000000 00
Q ss_pred HhhhcCC-CCCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 344 AKLIGAP-PGYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 344 ~~llg~~-~g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
..++.-. ....|.++...+.+.+.. ..+.|++|||+++++.+.++.|++.+|+.. .+++||++|
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-----------~~v~fIL~T 156 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-----------EYVKFILAT 156 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-----------CCceEEEEE
Confidence 0000000 011222222223333332 346799999999999999999999999632 456788777
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~ 498 (607)
+- ... .. +.+.+|. .++.|.|++.+++
T Consensus 157 td-~~k--------------------------------------------------il-~tI~SRc-~~~~f~~Ls~~eI 183 (546)
T PRK14957 157 TD-YHK--------------------------------------------------IP-VTILSRC-IQLHLKHISQADI 183 (546)
T ss_pred CC-hhh--------------------------------------------------hh-hhHHHhe-eeEEeCCCCHHHH
Confidence 51 111 11 4577888 7899999999998
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 499 HTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 499 ~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
...+...+.. .| +.++++++++|+. +. .+..|.+-+.+++.+
T Consensus 184 ~~~L~~il~~--------eg--i~~e~~Al~~Ia~-~s-~GdlR~alnlLek~i 225 (546)
T PRK14957 184 KDQLKIILAK--------EN--INSDEQSLEYIAY-HA-KGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH--------cC--CCCCHHHHHHHHH-Hc-CCCHHHHHHHHHHHH
Confidence 8886665542 23 5679999999885 22 355777777776544
No 154
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=8.9e-11 Score=125.41 Aligned_cols=199 Identities=17% Similarity=0.229 Sum_probs=121.7
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC---CceEEe-eccccc--ccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK---EAFIRL-DMSEYQ--EKH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~---~~~~~l-~~a~~~--~~~ 341 (607)
..++||+..++.+...+..... |-.++|+||+|+|||.+|+.+++.++.... .++-.. .|.... .+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l-------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL-------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC-------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 4689999999999988865432 225899999999999999999999865311 111000 000000 000
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
++.++-+ ....+-++-..+.+.+.. ..+.|++|||+++++++.++.|++.+++. ..+++||++
T Consensus 89 d~~eida--as~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-----------p~~~~fIla 155 (509)
T PRK14958 89 DLFEVDA--ASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-----------PSHVKFILA 155 (509)
T ss_pred eEEEEcc--cccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-----------CCCeEEEEE
Confidence 0111100 011111111112222222 23679999999999999999999999953 256788888
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
|+- ... .. +-+.+|. .++.|.|++.++
T Consensus 156 ttd-~~k--------------------------------------------------l~-~tI~SRc-~~~~f~~l~~~~ 182 (509)
T PRK14958 156 TTD-HHK--------------------------------------------------LP-VTVLSRC-LQFHLAQLPPLQ 182 (509)
T ss_pred ECC-hHh--------------------------------------------------ch-HHHHHHh-hhhhcCCCCHHH
Confidence 761 110 11 4577777 567899999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+...+...+.. .| +.+++++++.|++ . ..++.|..-+.+++.
T Consensus 183 i~~~l~~il~~--------eg--i~~~~~al~~ia~-~-s~GslR~al~lLdq~ 224 (509)
T PRK14958 183 IAAHCQHLLKE--------EN--VEFENAALDLLAR-A-ANGSVRDALSLLDQS 224 (509)
T ss_pred HHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCcHHHHHHHHHHH
Confidence 88776655542 13 4568888888875 2 135566666666543
No 155
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.4e-10 Score=122.64 Aligned_cols=185 Identities=20% Similarity=0.318 Sum_probs=122.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCC--------------------
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE-------------------- 327 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~-------------------- 327 (607)
..++||+.++..+...+.... -|-.++|+||+|+|||.+|+.+++.++.....
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 469999999888877766443 13358999999999999999999988643110
Q ss_pred ceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCC
Q psy1308 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGK 403 (607)
Q Consensus 328 ~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~ 403 (607)
.+..++.+...+-..+. .+.+.+.. ..+.++++||++.+..+.++.|+..+++.
T Consensus 87 dv~el~aa~~~gid~iR----------------~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p------ 144 (472)
T PRK14962 87 DVIELDAASNRGIDEIR----------------KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP------ 144 (472)
T ss_pred ccEEEeCcccCCHHHHH----------------HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC------
Confidence 12222222111111111 11222222 23579999999999999999999999852
Q ss_pred CcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcc
Q psy1308 404 GKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGR 483 (607)
Q Consensus 404 g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~r 483 (607)
..+++||++++. ... +. +.+.+|
T Consensus 145 -----~~~vv~Ilattn-~~k--------------------------------------------------l~-~~L~SR 167 (472)
T PRK14962 145 -----PSHVVFVLATTN-LEK--------------------------------------------------VP-PTIISR 167 (472)
T ss_pred -----CCcEEEEEEeCC-hHh--------------------------------------------------hh-HHHhcC
Confidence 135677777661 111 11 667778
Q ss_pred ccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 484 INEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 484 i~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+ .++.|.|++.+++..++...+.. .+ +.++++++++|+. + ..+++|.+-+.+++.
T Consensus 168 ~-~vv~f~~l~~~el~~~L~~i~~~--------eg--i~i~~eal~~Ia~-~-s~GdlR~aln~Le~l 222 (472)
T PRK14962 168 C-QVIEFRNISDELIIKRLQEVAEA--------EG--IEIDREALSFIAK-R-ASGGLRDALTMLEQV 222 (472)
T ss_pred c-EEEEECCccHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-hCCCHHHHHHHHHHH
Confidence 7 57999999999988886655531 13 4689999999985 2 247788777777653
No 156
>KOG0515|consensus
Probab=99.23 E-value=1.6e-11 Score=123.11 Aligned_cols=91 Identities=22% Similarity=0.335 Sum_probs=81.3
Q ss_pred HHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhH
Q psy1308 155 VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANI 234 (607)
Q Consensus 155 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~ 234 (607)
|.-|+..|-+++|+-.+..-.|+...++. |-|+||-|+..||++||+||++.|+|+|+.|.+||||||+|+..++
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdE-----GITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNn 628 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDE-----GITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNN 628 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCcc-----chhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCc
Confidence 45578889999999888876666655444 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHh
Q psy1308 235 KQILQKYAEKYADLQR 250 (607)
Q Consensus 235 ~~~~~~ll~~~~~~~~ 250 (607)
..+++.|++.|+.+..
T Consensus 629 v~~ckqLVe~GaavfA 644 (752)
T KOG0515|consen 629 VPMCKQLVESGAAVFA 644 (752)
T ss_pred hHHHHHHHhccceEEe
Confidence 9999999999987654
No 157
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.23 E-value=1.2e-10 Score=117.21 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=108.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceE--------------
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFI-------------- 330 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~-------------- 330 (607)
..++||+.+...+......... -.+++.|++|+|||.++|.+++++.... ..+|.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~--------~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~ 88 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKI--------GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVR 88 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCC--------CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhh
Confidence 4689999998887666554322 2688999999999999999999885421 22332
Q ss_pred --------------EeecccccccchhHhhhcCC---CCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHh
Q psy1308 331 --------------RLDMSEYQEKHEVAKLIGAP---PGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQL 393 (607)
Q Consensus 331 --------------~l~~a~~~~~~~~~~llg~~---~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~ 393 (607)
...+.....+....+++|.- ....+. ......+.+.++.+|+|++|||+.+++.+|..|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g-~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLea 167 (350)
T CHL00081 89 EAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEG-VKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDS 167 (350)
T ss_pred hhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcC-cccccCCeeeecCCCEEEecChHhCCHHHHHHHHHH
Confidence 00000111111222333320 000000 000123456678899999999999999999999999
Q ss_pred hccceeec-CCCcEE-ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHH
Q psy1308 394 FDEGRLTD-GKGKTI-ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPIL 471 (607)
Q Consensus 394 ~~~~~~~~-~~g~~~-~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (607)
+++|..+- ..|.+. .....++|.|.|..
T Consensus 168 m~e~~~~ier~G~s~~~p~rfiviaT~np~-------------------------------------------------- 197 (350)
T CHL00081 168 AASGWNTVEREGISIRHPARFVLVGSGNPE-------------------------------------------------- 197 (350)
T ss_pred HHhCCeEEeeCCeeeecCCCEEEEeccCcc--------------------------------------------------
Confidence 99875442 223332 22455666666621
Q ss_pred HhccCChhhhccccceeeeccCC-HHHHHHHHHHH
Q psy1308 472 KRHFRRDEFLGRINEIVYFLPFS-KSELHTLVCRE 505 (607)
Q Consensus 472 ~~~f~~~el~~ri~~iv~f~pl~-~~~~~~i~~~~ 505 (607)
.+.|+ ++|++||+-.+.....+ .++-.+|+.+.
T Consensus 198 eg~l~-~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 198 EGELR-PQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred cCCCC-HHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 12254 89999998777766665 45556666553
No 158
>KOG0730|consensus
Probab=99.23 E-value=1.1e-10 Score=122.15 Aligned_cols=204 Identities=22% Similarity=0.299 Sum_probs=133.9
Q ss_pred HhHhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc
Q psy1308 267 KDRIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ 338 (607)
Q Consensus 267 ~~~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~ 338 (607)
|..+-|++.....+.+.+... +.|++ .|--++|+||||+|||.+||++|..... +|..+-..+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~---ppkGVLlyGPPGC~KT~lAkalAne~~~----nFlsvkgpE-- 503 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGIS---PPKGVLLYGPPGCGKTLLAKALANEAGM----NFLSVKGPE-- 503 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCC---CCceEEEECCCCcchHHHHHHHhhhhcC----CeeeccCHH--
Confidence 456777888888888777533 33333 3448999999999999999999987533 366664433
Q ss_pred ccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccC-----------HHHHHHHHHhhccceeecCCCcEE
Q psy1308 339 EKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH-----------PDVLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 339 ~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~-----------~~~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
..+++.|..+..+ ..+....+++..+|+||||||.+- ..+++.||.-|+...
T Consensus 504 ---L~sk~vGeSEr~i-----r~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e--------- 566 (693)
T KOG0730|consen 504 ---LFSKYVGESERAI-----REVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE--------- 566 (693)
T ss_pred ---HHHHhcCchHHHH-----HHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------
Confidence 3455555332211 234555566667999999998753 336677777776321
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--ccc
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RIN 485 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~ 485 (607)
..++++||.+||... .+. +.++. |+|
T Consensus 567 ~~k~V~ViAATNRpd-------------------------------------------~ID---------~ALlRPGRlD 594 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPD-------------------------------------------MID---------PALLRPGRLD 594 (693)
T ss_pred ccCcEEEEeccCChh-------------------------------------------hcC---------HHHcCCcccc
Confidence 226899999999321 111 45555 999
Q ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHHHHHHHHHH
Q psy1308 486 EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVVSQLAAAHE 561 (607)
Q Consensus 486 ~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l 561 (607)
.++.+.+.+.+.-.+|++.... .+.+++++ ++.|++ ....+-.++|....+++-..++.+-+.
T Consensus 595 ~iiyVplPD~~aR~~Ilk~~~k------------kmp~~~~vdl~~La~-~T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 595 RIIYVPLPDLEARLEILKQCAK------------KMPFSEDVDLEELAQ-ATEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred eeEeecCccHHHHHHHHHHHHh------------cCCCCccccHHHHHH-HhccCChHHHHHHHHHHHHHHHHHhcc
Confidence 9888888888888888665553 23345553 566664 334444567888888877777755543
No 159
>KOG2028|consensus
Probab=99.22 E-value=8e-11 Score=114.16 Aligned_cols=173 Identities=16% Similarity=0.274 Sum_probs=115.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
+++||||+|+|||.||+.|+...... ...|+.+....- ...++..+|... -.+........|+|+||
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~-SyrfvelSAt~a-~t~dvR~ife~a-----------q~~~~l~krkTilFiDE 230 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKH-SYRFVELSATNA-KTNDVRDIFEQA-----------QNEKSLTKRKTILFIDE 230 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCC-ceEEEEEecccc-chHHHHHHHHHH-----------HHHHhhhcceeEEEeHH
Confidence 68899999999999999999765433 233555443322 223344444211 11122234468999999
Q ss_pred CCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhc
Q psy1308 379 VDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTI 458 (607)
Q Consensus 379 iek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
|++.+...|+.||..+|+|.+ ++|-+|.-...
T Consensus 231 iHRFNksQQD~fLP~VE~G~I-------------~lIGATTENPS----------------------------------- 262 (554)
T KOG2028|consen 231 IHRFNKSQQDTFLPHVENGDI-------------TLIGATTENPS----------------------------------- 262 (554)
T ss_pred hhhhhhhhhhcccceeccCce-------------EEEecccCCCc-----------------------------------
Confidence 999999999999999998864 35555441100
Q ss_pred chhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHh---hcCCcEEEeCHhHHHHHHccC
Q psy1308 459 SRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKAL---DKHNINIVWDIDVETILADGY 535 (607)
Q Consensus 459 ~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~---~~~~i~l~~~~~a~~~L~~~~ 535 (607)
| ++ +..|++|. .+++..+|..+++..|+.+.+..+..--+ ..-+-.+.+++.++++|+ |
T Consensus 263 ---F-----------ql-n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla--~ 324 (554)
T KOG2028|consen 263 ---F-----------QL-NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLA--Y 324 (554)
T ss_pred ---c-----------ch-hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHH--H
Confidence 0 01 26788999 57788999999999999987775543111 111224578999999997 5
Q ss_pred CCCCCccchhHHHHH
Q psy1308 536 DVHYGARSIKHEVER 550 (607)
Q Consensus 536 ~~~~GaR~L~~~i~~ 550 (607)
-..+.+|.--+.+|-
T Consensus 325 lsdGDaR~aLN~Lem 339 (554)
T KOG2028|consen 325 LSDGDARAALNALEM 339 (554)
T ss_pred hcCchHHHHHHHHHH
Confidence 566778866666664
No 160
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.22 E-value=2e-10 Score=126.84 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=91.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhcc-------------------------
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR------------------------- 323 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~------------------------- 323 (607)
.++||+.++..+..+...... -.++|.|++|+|||.+++.++..+..
T Consensus 5 ~ivGq~~~~~al~~~av~~~~--------g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~ 76 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDPRI--------GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRR 76 (633)
T ss_pred hhcChHHHHHHHHHHhhCCCC--------CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhh
Confidence 589999988777554433221 25999999999999999999999831
Q ss_pred ------CcCCceEEeecccccccchhHhhhcCCC--C--CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHh
Q psy1308 324 ------DKKEAFIRLDMSEYQEKHEVAKLIGAPP--G--YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQL 393 (607)
Q Consensus 324 ------~~~~~~~~l~~a~~~~~~~~~~llg~~~--g--~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~ 393 (607)
....+|+.+.++.. ...++|... . ..|. .....+.+..+.+||+|||||+++++.+|+.|+++
T Consensus 77 ~~~~~~~~~~pfv~~p~~~t-----~~~l~G~~d~~~~l~~g~--~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~ 149 (633)
T TIGR02442 77 KYRPSEQRPVPFVNLPLGAT-----EDRVVGSLDIERALREGE--KAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDA 149 (633)
T ss_pred cccccccCCCCeeeCCCCCc-----HHHcCCcccHHHHhhcCC--eeecCcceeecCCCeEEeChhhhCCHHHHHHHHHH
Confidence 00245666554432 345555310 0 0010 01123456678899999999999999999999999
Q ss_pred hcccee--ecCCCcEEecCceEEEEecC
Q psy1308 394 FDEGRL--TDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 394 ~~~~~~--~~~~g~~~~~~~~~iI~tsn 419 (607)
+++|.+ ...+.......++++|+|+|
T Consensus 150 le~g~~~v~r~g~~~~~~~~~~lIat~n 177 (633)
T TIGR02442 150 AAMGVNRVEREGLSVSHPARFVLIGTMN 177 (633)
T ss_pred HhcCCEEEEECCceeeecCCeEEEEecC
Confidence 999964 33333333346788999988
No 161
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=2.1e-10 Score=128.38 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=122.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC---CceEEe-eccccc----c
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK---EAFIRL-DMSEYQ----E 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~---~~~~~l-~~a~~~----~ 339 (607)
..++||+..++.|...+...+. +-.+||+|+.|+|||.+++.+++.++-... .++-.. .|-.+. +
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri-------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRI-------NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPG 87 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCC
Confidence 4689999999999888875431 225899999999999999999999864211 111000 000000 0
Q ss_pred cchhHhhhcCCCCCccCCCCchhhHHHh----hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEE
Q psy1308 340 KHEVAKLIGAPPGYLGHDDGGQLTKRLK----KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFV 415 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~~~l~~~~~----~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI 415 (607)
+..+..+-+. ...|-++-..+.+.+. ...+.|+||||+|+++.+.++.||++||+- ..+++||
T Consensus 88 ~~dv~eidaa--s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-----------P~~~~fI 154 (824)
T PRK07764 88 SLDVTEIDAA--SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-----------PEHLKFI 154 (824)
T ss_pred CCcEEEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-----------CCCeEEE
Confidence 0111111000 0001111111111111 234679999999999999999999999962 2577888
Q ss_pred EecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCH
Q psy1308 416 MTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSK 495 (607)
Q Consensus 416 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~ 495 (607)
|+++.. +. +. +.+.+|. .++.|.+++.
T Consensus 155 l~tt~~-~k--------------------------------------------------Ll-~TIrSRc-~~v~F~~l~~ 181 (824)
T PRK07764 155 FATTEP-DK--------------------------------------------------VI-GTIRSRT-HHYPFRLVPP 181 (824)
T ss_pred EEeCCh-hh--------------------------------------------------hh-HHHHhhe-eEEEeeCCCH
Confidence 887621 11 11 4566777 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 496 SELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 496 ~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
+++.+++...+.. . + +.++++++.+|+... .+..|...+.+++.+
T Consensus 182 ~~l~~~L~~il~~-------E-G--v~id~eal~lLa~~s--gGdlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQ-------E-G--VPVEPGVLPLVIRAG--GGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHH-------c-C--CCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 9998887665532 1 3 457888888887411 244666666666543
No 162
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.22 E-value=2.8e-10 Score=117.34 Aligned_cols=197 Identities=18% Similarity=0.292 Sum_probs=125.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKL 346 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~l 346 (607)
..++|++..++.+...+.... +.+++|+||+|+|||.+++.+++.+.... ..+++.++++.+.... ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~--~~~ 84 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG--KKY 84 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc--hhh
Confidence 357899999888877765321 22688999999999999999999886542 2356777776543211 011
Q ss_pred hcCCCCCc---c------CCCCchhhHHHh--------hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEec
Q psy1308 347 IGAPPGYL---G------HDDGGQLTKRLK--------KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 347 lg~~~g~~---g------~~~~~~l~~~~~--------~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
++..+.+. + ......+...++ ..+..+|++||++.+++..++.|..++++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~----------- 153 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS----------- 153 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-----------
Confidence 11111100 0 000111222111 1345799999999999999999999987431
Q ss_pred CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceee
Q psy1308 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVY 489 (607)
Q Consensus 410 ~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~ 489 (607)
.+++||++++.... +. +.+.+|. ..+.
T Consensus 154 ~~~~~Il~~~~~~~---------------------------------------------------~~-~~L~sr~-~~v~ 180 (337)
T PRK12402 154 RTCRFIIATRQPSK---------------------------------------------------LI-PPIRSRC-LPLF 180 (337)
T ss_pred CCCeEEEEeCChhh---------------------------------------------------Cc-hhhcCCc-eEEE
Confidence 23567777662110 11 4456665 4688
Q ss_pred eccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 490 FLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 490 f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
|.|++.+++..++...+.. .++ .+++++++.|+. +. +++.|.+.+.++.
T Consensus 181 ~~~~~~~~~~~~l~~~~~~--------~~~--~~~~~al~~l~~-~~-~gdlr~l~~~l~~ 229 (337)
T PRK12402 181 FRAPTDDELVDVLESIAEA--------EGV--DYDDDGLELIAY-YA-GGDLRKAILTLQT 229 (337)
T ss_pred ecCCCHHHHHHHHHHHHHH--------cCC--CCCHHHHHHHHH-Hc-CCCHHHHHHHHHH
Confidence 9999999988876665431 233 489999999986 44 6778877777664
No 163
>PHA02244 ATPase-like protein
Probab=99.22 E-value=7.5e-10 Score=110.71 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=90.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
..+++...+......+.+.... ..++++.||+|+|||.+++.++..+. .+|+.++. .. ....+.|
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~------~~PVLL~GppGtGKTtLA~aLA~~lg----~pfv~In~--l~---d~~~L~G 161 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNA------NIPVFLKGGAGSGKNHIAEQIAEALD----LDFYFMNA--IM---DEFELKG 161 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhc------CCCEEEECCCCCCHHHHHHHHHHHhC----CCEEEEec--Ch---HHHhhcc
Confidence 3566666666555555444322 34688999999999999999999864 35887762 11 1223444
Q ss_pred CCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 349 APPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
...+.... ..+.+...+ ..+++++||||+.++++++..|..+++++.+...++......++++|+|+|.
T Consensus 162 ~i~~~g~~-~dgpLl~A~--~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 162 FIDANGKF-HETPFYEAF--KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred cccccccc-cchHHHHHh--hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 21111011 112333333 4678999999999999999999999998877776666545578899999995
No 164
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.22 E-value=2.5e-10 Score=114.93 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=84.1
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CC----ceEEe----eccc--
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KE----AFIRL----DMSE-- 336 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~----~~~~l----~~a~-- 336 (607)
..++||+.+++.+..+...... -+++|.|++|+|||.++|.++..++.-. .+ .+.+. ++..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~--------~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~ 79 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGI--------GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVS 79 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCC--------CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccccc
Confidence 3588999999877654322111 1699999999999999999999985310 00 01111 1100
Q ss_pred -------------ccccchhHhhhcCC---CC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhcccee
Q psy1308 337 -------------YQEKHEVAKLIGAP---PG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRL 399 (607)
Q Consensus 337 -------------~~~~~~~~~llg~~---~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~ 399 (607)
.........++|.- .. ..| ......+.+..+.+|++++|||+.+++.+|+.|++.+++|.+
T Consensus 80 ~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g--~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 80 STTMIERPTPVVDLPLGVTEDRVVGALDIERALTRG--EKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred CCcccccCCccccCCCCCCcceeecchhhhhhhhcC--CeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 00011112244320 00 000 001123445567789999999999999999999999999874
Q ss_pred e--cCCCcEEecCceEEEEecC
Q psy1308 400 T--DGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 400 ~--~~~g~~~~~~~~~iI~tsn 419 (607)
+ ..+.........++|+|+|
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~N 179 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGN 179 (334)
T ss_pred EEEECCeEEecCCCEEEEecCC
Confidence 3 3322222234567777777
No 165
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.21 E-value=1.3e-10 Score=112.57 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=113.0
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
+.+++++|++|+|||.+++.++...... ...+..++++.+.... ..++ ..++ ..++|+|
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~----------------~~~~--~~~lLvI 96 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER-GKSAIYLPLAELAQAD--PEVL----------------EGLE--QADLVCL 96 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEeHHHHHHhH--HHHH----------------hhcc--cCCEEEE
Confidence 4578999999999999999999987654 4567788887764321 1121 1111 2359999
Q ss_pred ecCCccCHHH--HHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCc
Q psy1308 377 DEVDKAHPDV--LTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNL 454 (607)
Q Consensus 377 DEiek~~~~~--~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (607)
||++.++... +..|..+++... + .+..+|+||+......
T Consensus 97 Ddi~~l~~~~~~~~~L~~~l~~~~--~--------~~~~iIits~~~~~~~----------------------------- 137 (226)
T TIGR03420 97 DDVEAIAGQPEWQEALFHLYNRVR--E--------AGGRLLIAGRAAPAQL----------------------------- 137 (226)
T ss_pred eChhhhcCChHHHHHHHHHHHHHH--H--------cCCeEEEECCCChHHC-----------------------------
Confidence 9999998744 888888876321 1 1235778887432211
Q ss_pred chhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 455 DVTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
.... ++|.+|+. ..+.+.|++.++...++...+. . . .+.++++++++|+
T Consensus 138 ------------------~~~~-~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~-------~-~--~~~~~~~~l~~L~ 188 (226)
T TIGR03420 138 ------------------PLRL-PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA-------R-R--GLQLPDEVADYLL 188 (226)
T ss_pred ------------------Cccc-HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH-------H-c--CCCCCHHHHHHHH
Confidence 0011 56677764 5688899999998888754432 1 1 2568999999999
Q ss_pred ccCCCCCCccchhHHHHH
Q psy1308 533 DGYDVHYGARSIKHEVER 550 (607)
Q Consensus 533 ~~~~~~~GaR~L~~~i~~ 550 (607)
. + |+++.|+|++++++
T Consensus 189 ~-~-~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 189 R-H-GSRDMGSLMALLDA 204 (226)
T ss_pred H-h-ccCCHHHHHHHHHH
Confidence 6 5 99999999999987
No 166
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.19 E-value=4.5e-10 Score=111.28 Aligned_cols=127 Identities=15% Similarity=0.208 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCcc
Q psy1308 276 AINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLG 355 (607)
Q Consensus 276 ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g 355 (607)
.++.+...+.+.......-..|+.++++||+|+|||.++++++..+.. +|+.++.++.. .+ |+|
T Consensus 127 f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~----~~i~vsa~eL~-----sk-------~vG 190 (413)
T PLN00020 127 FMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGI----EPIVMSAGELE-----SE-------NAG 190 (413)
T ss_pred HHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC----CeEEEEHHHhh-----cC-------cCC
Confidence 344444444444333344456789999999999999999999998854 37888776552 22 333
Q ss_pred CCCCchhhHHHhh--------CCCeEEEEecCCccCHH-----------H-HHHHHHhhccceeecCCC-c--EEecCce
Q psy1308 356 HDDGGQLTKRLKK--------CPNAVVLFDEVDKAHPD-----------V-LTVLLQLFDEGRLTDGKG-K--TIECKDA 412 (607)
Q Consensus 356 ~~~~~~l~~~~~~--------~~~~vl~lDEiek~~~~-----------~-~~~Ll~~~~~~~~~~~~g-~--~~~~~~~ 412 (607)
+.+..+.+.++. ...++|||||||.+-+. + ...||.++|+-......| | .-....+
T Consensus 191 -EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 191 -EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred -cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 222334444432 24799999999986432 2 356888887432111111 1 0123568
Q ss_pred EEEEecC
Q psy1308 413 IFVMTSN 419 (607)
Q Consensus 413 ~iI~tsn 419 (607)
.||+|||
T Consensus 270 ~VIaTTN 276 (413)
T PLN00020 270 PIIVTGN 276 (413)
T ss_pred eEEEeCC
Confidence 8999999
No 167
>KOG0989|consensus
Probab=99.19 E-value=2.5e-10 Score=108.96 Aligned_cols=173 Identities=20% Similarity=0.276 Sum_probs=115.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCce--EEeecccccccchhH--
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAF--IRLDMSEYQEKHEVA-- 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~--~~l~~a~~~~~~~~~-- 344 (607)
.++||+..+..+..++.+ .. -.+++|+||+|||||..++++++.++..+-.+. ..++.+...+..-+.
T Consensus 37 e~~gQe~vV~~L~~a~~~-~~-------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR-RI-------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred hhcchHHHHHHHHHHHhh-cC-------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 589999999999999987 22 127999999999999999999999987432222 223444333322111
Q ss_pred -----hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 345 -----KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 345 -----~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
++.....+..| -...++-|++|||.|.++.+.|..|.+.||+- ..+++||+.+|
T Consensus 109 ik~fakl~~~~~~~~~----------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-----------s~~trFiLIcn 167 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRSDG----------YPCPPFKIIILDECDSMTSDAQAALRRTMEDF-----------SRTTRFILICN 167 (346)
T ss_pred hcCHHHHhhccccccC----------CCCCcceEEEEechhhhhHHHHHHHHHHHhcc-----------ccceEEEEEcC
Confidence 11110000000 01234679999999999999999999999952 36789999999
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
.-.. . ++.+.+|... +.|.||..+++.
T Consensus 168 ylsr---------------------------------------------------i-i~pi~SRC~K-frFk~L~d~~iv 194 (346)
T KOG0989|consen 168 YLSR---------------------------------------------------I-IRPLVSRCQK-FRFKKLKDEDIV 194 (346)
T ss_pred Chhh---------------------------------------------------C-ChHHHhhHHH-hcCCCcchHHHH
Confidence 3211 1 1567788854 688999887766
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 500 ~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
+.++ .++. .+ .+.+++++++.|++
T Consensus 195 ~rL~----~Ia~---~E---~v~~d~~al~~I~~ 218 (346)
T KOG0989|consen 195 DRLE----KIAS---KE---GVDIDDDALKLIAK 218 (346)
T ss_pred HHHH----HHHH---Hh---CCCCCHHHHHHHHH
Confidence 5533 2222 12 46788999999885
No 168
>KOG1710|consensus
Probab=99.19 E-value=1.2e-10 Score=108.75 Aligned_cols=118 Identities=23% Similarity=0.211 Sum_probs=98.3
Q ss_pred chHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCC
Q psy1308 31 SSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSK 110 (607)
Q Consensus 31 ~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 110 (607)
..||.-|+-.|..+-..-|++. ....+..|.+|.|+|..|+..|+.+.|++||+.|
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~-----------------------vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~g- 68 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLST-----------------------VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELG- 68 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHH-----------------------hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhC-
Confidence 4677777777777766666433 1224678999999999999999999999999999
Q ss_pred CCCccC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHh
Q psy1308 111 LDVNMR-HPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLK 172 (607)
Q Consensus 111 ~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~ 172 (607)
+|+|.. +..++||||+|+-+|+.++.++|++.|+.+...++ .|+-..||.-|+.++|..+-.
T Consensus 69 aDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 69 ADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred CCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence 999865 56789999999999999999999999999988776 568888888888888876543
No 169
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.18 E-value=8.9e-11 Score=130.56 Aligned_cols=95 Identities=22% Similarity=0.115 Sum_probs=85.3
Q ss_pred hHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCC
Q psy1308 32 SKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKL 111 (607)
Q Consensus 32 t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 111 (607)
+.||.|+..|+.+.++.|+..+... +..|..|+||||+||..|+.+++++|++.| +
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadi-----------------------n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-a 139 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADP-----------------------NCRDYDGRTPLHIACANGHVQVVRVLLEFG-A 139 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-----------------------CCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-C
Confidence 4589999999999999998776433 356889999999999999999999999998 9
Q ss_pred CCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-------CCCCCCCC
Q psy1308 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEA-------GANPNLGD 150 (607)
Q Consensus 112 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-------ga~~~~~d 150 (607)
++|.+|..|.||||+|+..|+.+++++|+++ |++++..+
T Consensus 140 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~ 185 (664)
T PTZ00322 140 DPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDS 185 (664)
T ss_pred CCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccc
Confidence 9999999999999999999999999999998 77666544
No 170
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=5e-10 Score=115.79 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=120.6
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEe-ecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRL-DMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l-~~a~~~~~~~~ 343 (607)
..++||+.+++.+...+..... |-.++|+||+|+|||.+|+.+++.++... ..++-.. .|....... .
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~-------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~-~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI-------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGL-C 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC-------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC-C
Confidence 4689999999998887764321 22579999999999999999999886321 1111000 000000000 0
Q ss_pred HhhhcCCCC-CccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 344 AKLIGAPPG-YLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 344 ~~llg~~~g-~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
..++...++ ..+.++-..+...+... .+.+++|||+++++...++.|++.+++. ..+++||++|
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-----------~~~~~fIl~t 156 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PQHIKFILAT 156 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-----------CCCeEEEEEc
Confidence 000000011 01111111122222222 3569999999999999999999999853 2456788877
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~ 498 (607)
+-. .. +. +.+.+|. ..+.|.|++.+++
T Consensus 157 ~~~-~~--------------------------------------------------l~-~tI~SRc-~~~~~~~l~~~el 183 (363)
T PRK14961 157 TDV-EK--------------------------------------------------IP-KTILSRC-LQFKLKIISEEKI 183 (363)
T ss_pred CCh-Hh--------------------------------------------------hh-HHHHhhc-eEEeCCCCCHHHH
Confidence 621 11 11 5567777 5789999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 499 HTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 499 ~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
.+++...+.. .+ +.+++++++.|+. +. .++.|..-+.+++.
T Consensus 184 ~~~L~~~~~~--------~g--~~i~~~al~~ia~-~s-~G~~R~al~~l~~~ 224 (363)
T PRK14961 184 FNFLKYILIK--------ES--IDTDEYALKLIAY-HA-HGSMRDALNLLEHA 224 (363)
T ss_pred HHHHHHHHHH--------cC--CCCCHHHHHHHHH-Hc-CCCHHHHHHHHHHH
Confidence 9887665532 12 4578999998875 22 34567666666554
No 171
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=5.7e-10 Score=117.40 Aligned_cols=186 Identities=17% Similarity=0.276 Sum_probs=122.6
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CC-----------------
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KE----------------- 327 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~----------------- 327 (607)
..++||+..++.+..++..... |-.++|+||+|+|||.+|+.+|+.++-.. ..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri-------~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKI-------PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 4689999999988877764431 33799999999999999999999875321 11
Q ss_pred ceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCC
Q psy1308 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGK 403 (607)
Q Consensus 328 ~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~ 403 (607)
.++.+|.+...+-..+. .+.+.+... .+-+++|||++.++.+.++.|++.+|+-
T Consensus 86 Dv~eidaas~~~vddIR----------------~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP------ 143 (491)
T PRK14964 86 DVIEIDAASNTSVDDIK----------------VILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP------ 143 (491)
T ss_pred CEEEEecccCCCHHHHH----------------HHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC------
Confidence 12223322222211222 222223323 3679999999999999999999999963
Q ss_pred CcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcc
Q psy1308 404 GKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGR 483 (607)
Q Consensus 404 g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~r 483 (607)
..+++||++++-- .. +. +.+.+|
T Consensus 144 -----p~~v~fIlatte~-~K--------------------------------------------------l~-~tI~SR 166 (491)
T PRK14964 144 -----APHVKFILATTEV-KK--------------------------------------------------IP-VTIISR 166 (491)
T ss_pred -----CCCeEEEEEeCCh-HH--------------------------------------------------HH-HHHHHh
Confidence 2467888887611 00 11 445666
Q ss_pred ccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 484 INEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 484 i~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
. ..+.|.|++.+++...+...+.. . .+.+++++++.|++.. .++.|.+-+.+++.+
T Consensus 167 c-~~~~f~~l~~~el~~~L~~ia~~-------E---gi~i~~eAL~lIa~~s--~GslR~alslLdqli 222 (491)
T PRK14964 167 C-QRFDLQKIPTDKLVEHLVDIAKK-------E---NIEHDEESLKLIAENS--SGSMRNALFLLEQAA 222 (491)
T ss_pred h-eeeecccccHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 6 56899999999988886655542 1 3467899999887511 356676666666543
No 172
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.18 E-value=2.4e-10 Score=120.92 Aligned_cols=195 Identities=22% Similarity=0.311 Sum_probs=119.9
Q ss_pred HhhhhHHHHHHHHHHHHH-----hhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 269 RIVGQESAINIISAAIKR-----KENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~-----~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
.+.|.+...+.+...... ...|. ..|..++|+||+|||||.+|++++..+. -+|+.++++.+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl---~~pkGILL~GPpGTGKTllAkaiA~e~~----~~~~~l~~~~l~----- 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGL---PTPRGLLLVGIQGTGKSLTAKAIANDWQ----LPLLRLDVGKLF----- 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCC---CCCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEEEhHHhc-----
Confidence 466666555555432211 11222 2345799999999999999999999874 459999986432
Q ss_pred HhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccCH------------HHHHHHHHhhccceeecCCCcEEec
Q psy1308 344 AKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAHP------------DVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~~------------~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
+ +|+|..+. ..+....+....+||||||||++-. .+...|+..+++. .
T Consensus 297 ----~---~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~ 358 (489)
T CHL00195 297 ----G---GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------K 358 (489)
T ss_pred ----c---cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------C
Confidence 1 23332111 1233444566789999999998633 2445566666532 1
Q ss_pred CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--ccccce
Q psy1308 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEI 487 (607)
Q Consensus 410 ~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~i 487 (607)
.++++|+|||... . + +|+++ +|||.+
T Consensus 359 ~~V~vIaTTN~~~-~--------------------------------------------------L-d~allR~GRFD~~ 386 (489)
T CHL00195 359 SPVFVVATANNID-L--------------------------------------------------L-PLEILRKGRFDEI 386 (489)
T ss_pred CceEEEEecCChh-h--------------------------------------------------C-CHHHhCCCcCCeE
Confidence 4678999999211 0 1 15555 499998
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHH
Q psy1308 488 VYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 488 v~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
+.+.+++.++..+|++..+..... . ..++.-++.|++ ....+..+.|++.+......+
T Consensus 387 i~v~lP~~~eR~~Il~~~l~~~~~--------~-~~~~~dl~~La~-~T~GfSGAdI~~lv~eA~~~A 444 (489)
T CHL00195 387 FFLDLPSLEEREKIFKIHLQKFRP--------K-SWKKYDIKKLSK-LSNKFSGAEIEQSIIEAMYIA 444 (489)
T ss_pred EEeCCcCHHHHHHHHHHHHhhcCC--------C-cccccCHHHHHh-hcCCCCHHHHHHHHHHHHHHH
Confidence 888888999999999888864211 0 112223455654 444555566777666554433
No 173
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=4.4e-10 Score=121.50 Aligned_cols=199 Identities=18% Similarity=0.231 Sum_probs=120.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCC---ceEEeecccccccchh-
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE---AFIRLDMSEYQEKHEV- 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~---~~~~l~~a~~~~~~~~- 343 (607)
..++||+..++.+...+..... |-.++|+||+|+|||.+++.+++.++..+.. +.+.--|.....-..+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl-------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~ 88 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL-------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDID 88 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHH
Confidence 3588999999999888875532 2357999999999999999999998743111 1000011100000000
Q ss_pred ----HhhhcCCCC-CccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 344 ----AKLIGAPPG-YLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 344 ----~~llg~~~g-~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
..++.-.+. ..|-++-..+.+.+... .+-|++|||+|.++.+.++.|++.+|+. ..+++|
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-----------P~~~~f 157 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-----------PEYLKF 157 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-----------CCCeEE
Confidence 001100000 11111111122222222 3679999999999999999999999863 256778
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++|+-. ..+ . +-+.+|. .++.|.|++
T Consensus 158 IL~Ttd~-~ki--------------------------------------------------l-~TIlSRc-~~~~f~~Ls 184 (618)
T PRK14951 158 VLATTDP-QKV--------------------------------------------------P-VTVLSRC-LQFNLRPMA 184 (618)
T ss_pred EEEECCc-hhh--------------------------------------------------h-HHHHHhc-eeeecCCCC
Confidence 8887621 111 1 4577787 678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHH
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVE 549 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~ 549 (607)
.+++.+.+...+.. .| +.++++++++|++ + ..++.|.+-+.++
T Consensus 185 ~eei~~~L~~i~~~--------eg--i~ie~~AL~~La~-~-s~GslR~al~lLd 227 (618)
T PRK14951 185 PETVLEHLTQVLAA--------EN--VPAEPQALRLLAR-A-ARGSMRDALSLTD 227 (618)
T ss_pred HHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHH
Confidence 99998887765531 13 4578888888875 1 2245555555444
No 174
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=8.2e-10 Score=119.04 Aligned_cols=199 Identities=20% Similarity=0.215 Sum_probs=123.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC---CceEEe-eccccc----c
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK---EAFIRL-DMSEYQ----E 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~---~~~~~l-~~a~~~----~ 339 (607)
..++||+.+++.+...+..... |-.++|+||+|+|||.+|+.+++.++.... .++-.. .|-.+. +
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~-------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRI-------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPG 85 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCC
Confidence 4689999999999888864321 224799999999999999999998874211 111100 011110 0
Q ss_pred cchhHhhhcCCCCCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEE
Q psy1308 340 KHEVAKLIGAPPGYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFV 415 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI 415 (607)
+..+.++-+. ...|-++-..+.+.+.. +++-|++|||++.++.+.++.||+.+++- ..+++||
T Consensus 86 ~~dvieidaa--s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-----------p~~~~fI 152 (584)
T PRK14952 86 SIDVVELDAA--SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP-----------PEHLIFI 152 (584)
T ss_pred CceEEEeccc--cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-----------CCCeEEE
Confidence 1111111110 01111111122222222 34679999999999999999999999952 3577888
Q ss_pred EecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCH
Q psy1308 416 MTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSK 495 (607)
Q Consensus 416 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~ 495 (607)
++|+-. .. +. +.+.+|. ..+.|.|++.
T Consensus 153 L~tte~-~k--------------------------------------------------ll-~TI~SRc-~~~~F~~l~~ 179 (584)
T PRK14952 153 FATTEP-EK--------------------------------------------------VL-PTIRSRT-HHYPFRLLPP 179 (584)
T ss_pred EEeCCh-Hh--------------------------------------------------hH-HHHHHhc-eEEEeeCCCH
Confidence 887621 11 11 5677786 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 496 SELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 496 ~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+++.+.+...+.. .| +.++++++.+|+. + ..++.|..-+.+++.
T Consensus 180 ~~i~~~L~~i~~~--------eg--i~i~~~al~~Ia~-~-s~GdlR~aln~Ldql 223 (584)
T PRK14952 180 RTMRALIARICEQ--------EG--VVVDDAVYPLVIR-A-GGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHHH
Confidence 9988776554431 13 4578889888874 1 135566666666553
No 175
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.17 E-value=6.7e-10 Score=115.64 Aligned_cols=204 Identities=22% Similarity=0.205 Sum_probs=122.7
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC-----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRKENG-----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~-----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
..+.|.+..++.+...+...... ......|..++++||+|||||.+|++++..+.. +|+.++++.+.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~----~~i~v~~~~l~---- 202 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA----TFIRVVGSELV---- 202 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC----CEEEeehHHHh----
Confidence 35778888888887766432110 111223557999999999999999999988743 48888776542
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
..+.|.... .-..+....+....+||||||||.+ +++++..|++++..-.-.. ...+
T Consensus 203 -~~~~g~~~~-----~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~~~ 270 (389)
T PRK03992 203 -QKFIGEGAR-----LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD------PRGN 270 (389)
T ss_pred -HhhccchHH-----HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC------CCCC
Confidence 222221111 0012333344556789999999987 4677888888775321111 1247
Q ss_pred eEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--ccccceee
Q psy1308 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEIVY 489 (607)
Q Consensus 412 ~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~iv~ 489 (607)
++||+|||... . + .+.++ +||+..+.
T Consensus 271 v~VI~aTn~~~-~--------------------------------------------------l-d~allRpgRfd~~I~ 298 (389)
T PRK03992 271 VKIIAATNRID-I--------------------------------------------------L-DPAILRPGRFDRIIE 298 (389)
T ss_pred EEEEEecCChh-h--------------------------------------------------C-CHHHcCCccCceEEE
Confidence 88999999321 1 1 13343 48888999
Q ss_pred eccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHH
Q psy1308 490 FLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 490 f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
+.|++.++..+|++..+.. ..+.-.++ ...|+. ....+..+.|+..+.+....+
T Consensus 299 v~~P~~~~R~~Il~~~~~~--------~~~~~~~~---~~~la~-~t~g~sgadl~~l~~eA~~~a 352 (389)
T PRK03992 299 VPLPDEEGRLEILKIHTRK--------MNLADDVD---LEELAE-LTEGASGADLKAICTEAGMFA 352 (389)
T ss_pred ECCCCHHHHHHHHHHHhcc--------CCCCCcCC---HHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999998754431 11111122 344443 333445556776666554433
No 176
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=5.1e-10 Score=121.28 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=119.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++||+.++..+...+..... +-.++|+|++|+|||.+++.+++.++... +...--|... ..+..+-
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl-------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~--~~~~~pCg~C---~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL-------HHAYLFSGTRGVGKTTIARLLAKGLNCET--GITATPCGEC---DNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHhhhhcc--CCCCCCCCCC---HHHHHHH
Confidence 4699999999999888875431 22479999999999999999999986531 1100011100 0011110
Q ss_pred -cC-------CCC-CccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 348 -GA-------PPG-YLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 348 -g~-------~~g-~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
|. .+. ..+-++-..+.+.+.. ..+-|++|||+++++...++.||+.+|+- ..+++|
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-----------p~~v~F 152 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKF 152 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-----------CCCeEE
Confidence 00 000 1111111122222222 24679999999999999999999999963 256788
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++|+-.. . +. +-+++|. ..+.|.|++
T Consensus 153 IL~Tt~~~-k--------------------------------------------------Ll-~TI~SRC-~~~~f~~Ls 179 (647)
T PRK07994 153 LLATTDPQ-K--------------------------------------------------LP-VTILSRC-LQFHLKALD 179 (647)
T ss_pred EEecCCcc-c--------------------------------------------------cc-hHHHhhh-eEeeCCCCC
Confidence 88877211 0 11 5677887 678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHH
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEV 548 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i 548 (607)
.+++...+...+.. . + +.++++++..|+. + ..+..|..-+.+
T Consensus 180 ~~ei~~~L~~il~~-------e-~--i~~e~~aL~~Ia~-~-s~Gs~R~Al~ll 221 (647)
T PRK07994 180 VEQIRQQLEHILQA-------E-Q--IPFEPRALQLLAR-A-ADGSMRDALSLT 221 (647)
T ss_pred HHHHHHHHHHHHHH-------c-C--CCCCHHHHHHHHH-H-cCCCHHHHHHHH
Confidence 99988876665532 1 2 4567888888764 2 223344444443
No 177
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=5.2e-10 Score=120.58 Aligned_cols=198 Identities=16% Similarity=0.243 Sum_probs=122.9
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC---CceEEee-cccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK---EAFIRLD-MSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~---~~~~~l~-~a~~~~~~~~ 343 (607)
..++||+.+++.+...+..... +-.++|+||+|+|||.+++.+++.++.... .++.... |..... ...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl-------~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~-g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRL-------HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA-GRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc-cCc
Confidence 4699999999999888775321 236899999999999999999998865311 1111000 000000 000
Q ss_pred HhhhcCC-CCCccCCCCchhhHHHhh-------CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEE
Q psy1308 344 AKLIGAP-PGYLGHDDGGQLTKRLKK-------CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFV 415 (607)
Q Consensus 344 ~~llg~~-~g~~g~~~~~~l~~~~~~-------~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI 415 (607)
..++.-. ....|. ..+.+++.. ..+.|+||||+++++...++.||+.+++. ..+++||
T Consensus 88 ~DvlEidaAs~~gV---d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-----------p~~v~fI 153 (709)
T PRK08691 88 VDLLEIDAASNTGI---DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-----------PEHVKFI 153 (709)
T ss_pred cceEEEeccccCCH---HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-----------CCCcEEE
Confidence 0000000 000111 122333321 34579999999999999999999999852 2467788
Q ss_pred EecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCH
Q psy1308 416 MTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSK 495 (607)
Q Consensus 416 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~ 495 (607)
++|+-... .. +-+++|+ ..+.|.|++.
T Consensus 154 LaTtd~~k---------------------------------------------------L~-~TIrSRC-~~f~f~~Ls~ 180 (709)
T PRK08691 154 LATTDPHK---------------------------------------------------VP-VTVLSRC-LQFVLRNMTA 180 (709)
T ss_pred EEeCCccc---------------------------------------------------cc-hHHHHHH-hhhhcCCCCH
Confidence 88862110 11 4566777 4578889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 496 SELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 496 ~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
+++..++...+.. .| +.+++++++.|++ +. .++.|.+.+.+++.+
T Consensus 181 eeI~~~L~~Il~k--------Eg--i~id~eAL~~Ia~-~A-~GslRdAlnLLDqai 225 (709)
T PRK08691 181 QQVADHLAHVLDS--------EK--IAYEPPALQLLGR-AA-AGSMRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHHHH--------cC--CCcCHHHHHHHHH-Hh-CCCHHHHHHHHHHHH
Confidence 9998887655431 13 5678999999985 22 467777777776544
No 178
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=7.5e-10 Score=118.85 Aligned_cols=198 Identities=21% Similarity=0.301 Sum_probs=120.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEe-eccc-cc-ccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRL-DMSE-YQ-EKH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l-~~a~-~~-~~~ 341 (607)
..++||+..+..+..++..... +-.++|+||+|+|||.+|+.+++.++... ..++-.. .|.. .. .+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri-------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRV-------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCC-------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCC
Confidence 3688999999998888865321 23789999999999999999999986421 1111110 0000 00 000
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHh----hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLK----KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~----~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
.+.++-+. ...+-++-..+.+.+. ...+.|++|||+++++.+.++.|++.+++. ..+++||++
T Consensus 89 Dv~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-----------~~~~ifILa 155 (624)
T PRK14959 89 DVVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-----------PARVTFVLA 155 (624)
T ss_pred ceEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-----------CCCEEEEEe
Confidence 01111000 0111111112222222 234679999999999999999999999862 146788888
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
|+.... +. +-+.+|+ .++.|.|++.++
T Consensus 156 Tt~~~k---------------------------------------------------ll-~TI~SRc-q~i~F~pLs~~e 182 (624)
T PRK14959 156 TTEPHK---------------------------------------------------FP-VTIVSRC-QHFTFTRLSEAG 182 (624)
T ss_pred cCChhh---------------------------------------------------hh-HHHHhhh-hccccCCCCHHH
Confidence 872111 11 4466677 467899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
+..++...+.. . .+.+++++++.|++ +. .+++|..-+.+++
T Consensus 183 L~~~L~~il~~--------e--gi~id~eal~lIA~-~s-~GdlR~Al~lLeq 223 (624)
T PRK14959 183 LEAHLTKVLGR--------E--GVDYDPAAVRLIAR-RA-AGSVRDSMSLLGQ 223 (624)
T ss_pred HHHHHHHHHHH--------c--CCCCCHHHHHHHHH-Hc-CCCHHHHHHHHHH
Confidence 99887664431 1 24578999999875 22 2446655555543
No 179
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.1e-09 Score=116.30 Aligned_cols=200 Identities=18% Similarity=0.230 Sum_probs=124.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC--Cc--eEE----eecccccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK--EA--FIR----LDMSEYQE 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~--~~--~~~----l~~a~~~~ 339 (607)
..++||+..+..+..++..... |-.++|+||+|+|||.+|+.+++.++.... .+ +.+ -+|-.+..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri-------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~ 93 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL-------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNN 93 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhc
Confidence 4689999999988877754431 337999999999999999999999865310 00 000 01111110
Q ss_pred --cchhHhhhcCCCCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 340 --KHEVAKLIGAPPGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 340 --~~~~~~llg~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
+..+.++-+. ...|-++-..+.+..... .+.|++|||++.++...++.|++.+++. ..+++
T Consensus 94 ~~h~Dv~eidaa--s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-----------p~~~v 160 (507)
T PRK06645 94 HNHPDIIEIDAA--SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-----------PPHII 160 (507)
T ss_pred CCCCcEEEeecc--CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-----------CCCEE
Confidence 0011111000 011111111222222222 3679999999999999999999999852 24677
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl 493 (607)
||++++.- .. .. +.+.+|. ..+.|.|+
T Consensus 161 fI~aTte~-~k--------------------------------------------------I~-~tI~SRc-~~~ef~~l 187 (507)
T PRK06645 161 FIFATTEV-QK--------------------------------------------------IP-ATIISRC-QRYDLRRL 187 (507)
T ss_pred EEEEeCCh-HH--------------------------------------------------hh-HHHHhcc-eEEEccCC
Confidence 88877611 00 11 4566777 56889999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 494 ~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
+.+++..++...+.. .| +.+++++++.|+.. ..++.|..-+.+++.+
T Consensus 188 s~~el~~~L~~i~~~--------eg--i~ie~eAL~~Ia~~--s~GslR~al~~Ldkai 234 (507)
T PRK06645 188 SFEEIFKLLEYITKQ--------EN--LKTDIEALRIIAYK--SEGSARDAVSILDQAA 234 (507)
T ss_pred CHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 999999987776652 12 45789999988751 2456776666666543
No 180
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.14 E-value=1.2e-09 Score=118.85 Aligned_cols=130 Identities=17% Similarity=0.163 Sum_probs=88.2
Q ss_pred hhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCc----------EEecCceEEEEecCcchHHHHHHHhh
Q psy1308 362 LTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGK----------TIECKDAIFVMTSNLASNEIAQHALQ 431 (607)
Q Consensus 362 l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~----------~~~~~~~~iI~tsn~~~~~i~~~~~~ 431 (607)
..+.+.++++|+|||||++.+++..|..|+++++++++...++. .....++++|+++|.....
T Consensus 218 ~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~------- 290 (637)
T PRK13765 218 EAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALE------- 290 (637)
T ss_pred CCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHH-------
Confidence 45677889999999999999999999999999999998764321 1123467899999952111
Q ss_pred hhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccc---ceeeeccCCHHHHHHHHHHHHHH
Q psy1308 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRIN---EIVYFLPFSKSELHTLVCRELNF 508 (607)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~---~iv~f~pl~~~~~~~i~~~~l~~ 508 (607)
.+. |+|++||. .-+.|.+ ..++..+....++..
T Consensus 291 ------------------------------------------~~d-pdL~~rfk~~~v~v~f~~-~~~d~~e~~~~~~~~ 326 (637)
T PRK13765 291 ------------------------------------------NMH-PALRSRIKGYGYEVYMRD-TMEDTPENRRKLVRF 326 (637)
T ss_pred ------------------------------------------hhh-HHHHHHhccCeEEEEccc-ccCCCHHHHHHHHHH
Confidence 122 88888886 3344443 444555666666665
Q ss_pred HHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccc
Q psy1308 509 WAKKALDKHNINIVWDIDVETILADGYDVHYGARS 543 (607)
Q Consensus 509 ~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~ 543 (607)
+.+++... |-...++++++..|.+.|....|.|.
T Consensus 327 iaqe~~~~-G~l~~f~~eAVa~LI~~~~R~ag~r~ 360 (637)
T PRK13765 327 VAQEVKRD-GKIPHFDRDAVEEIIREAKRRAGRKG 360 (637)
T ss_pred HHHHhhhc-cCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 55554332 23347889998888765666667766
No 181
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.2e-09 Score=103.26 Aligned_cols=177 Identities=23% Similarity=0.307 Sum_probs=119.9
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKL 346 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~l 346 (607)
..++||....+.+.-.++..+... .++ +++|.||||.|||.||..+|..+... +..-.-...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~----e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn----~k~tsGp~l--------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG----EALDHVLLFGPPGLGKTTLAHIIANELGVN----LKITSGPAL--------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC----CCcCeEEeeCCCCCcHHHHHHHHHHHhcCC----eEecccccc---------
Confidence 469999999999988887665432 245 99999999999999999999988543 211111111
Q ss_pred hcCCCCCccCCCCchhhHHHhh-CCCeEEEEecCCccCHHHHHHHHHhhccceeec--CCC-----cEEecCceEEEEec
Q psy1308 347 IGAPPGYLGHDDGGQLTKRLKK-CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD--GKG-----KTIECKDAIFVMTS 418 (607)
Q Consensus 347 lg~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~--~~g-----~~~~~~~~~iI~ts 418 (607)
+..+++..++.. .++.|+|+|||++++|.+-..|...||+-.+-- ..| ..++....-+|-+|
T Consensus 89 ----------eK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 89 ----------EKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred ----------cChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 123344444433 357899999999999999999999999655321 222 23444555555554
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~ 498 (607)
... +.+. ..|..||..+..+.-++.+|+
T Consensus 159 Tr~---------------------------------------------------G~lt-~PLrdRFGi~~rlefY~~~eL 186 (332)
T COG2255 159 TRA---------------------------------------------------GMLT-NPLRDRFGIIQRLEFYTVEEL 186 (332)
T ss_pred ccc---------------------------------------------------cccc-chhHHhcCCeeeeecCCHHHH
Confidence 411 1122 557778877777778899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 499 HTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 499 ~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.+|+.+.-. -..+++++++...|++
T Consensus 187 ~~Iv~r~a~----------~l~i~i~~~~a~eIA~ 211 (332)
T COG2255 187 EEIVKRSAK----------ILGIEIDEEAALEIAR 211 (332)
T ss_pred HHHHHHHHH----------HhCCCCChHHHHHHHH
Confidence 999765442 2246677888777774
No 182
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.13 E-value=2.7e-09 Score=108.91 Aligned_cols=186 Identities=18% Similarity=0.204 Sum_probs=122.6
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++||+...+.+...+.... .|-.++++||+|+|||.+++.+++.+.. ++..++++. .....+...+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-------~~~~lll~G~~G~GKT~la~~l~~~~~~----~~~~i~~~~-~~~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-------IPNMLLHSPSPGTGKTTVAKALCNEVGA----EVLFVNGSD-CRIDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------CCeEEEeeCcCCCCHHHHHHHHHHHhCc----cceEeccCc-ccHHHHHHHH
Confidence 358899999888887776321 2446777999999999999999987632 366677665 1111111111
Q ss_pred cCCCCCccCCCCchhhHHHh----hCCCeEEEEecCCcc-CHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcch
Q psy1308 348 GAPPGYLGHDDGGQLTKRLK----KCPNAVVLFDEVDKA-HPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLAS 422 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~----~~~~~vl~lDEiek~-~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~ 422 (607)
..... ..+..+|+|||++.+ ..+.++.|..++++. ..++.||+|||...
T Consensus 89 ---------------~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-----------~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 89 ---------------TRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-----------SKNCSFIITANNKN 142 (316)
T ss_pred ---------------HHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-----------CCCceEEEEcCChh
Confidence 11111 134679999999999 777888888888742 14668999988211
Q ss_pred HHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHH
Q psy1308 423 NEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLV 502 (607)
Q Consensus 423 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~ 502 (607)
.+. |.+.+|+. .+.|.+++.++...++
T Consensus 143 ---------------------------------------------------~l~-~~l~sR~~-~i~~~~p~~~~~~~il 169 (316)
T PHA02544 143 ---------------------------------------------------GII-EPLRSRCR-VIDFGVPTKEEQIEMM 169 (316)
T ss_pred ---------------------------------------------------hch-HHHHhhce-EEEeCCCCHHHHHHHH
Confidence 011 66778884 6788788899988888
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHH
Q psy1308 503 CRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVE 549 (607)
Q Consensus 503 ~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~ 549 (607)
...+..+...+... .+.++++++..|+. +.++ +.|.+-+.++
T Consensus 170 ~~~~~~~~~~~~~~---~~~i~~~al~~l~~-~~~~-d~r~~l~~l~ 211 (316)
T PHA02544 170 KQMIVRCKGILEAE---GVEVDMKVLAALVK-KNFP-DFRRTINELQ 211 (316)
T ss_pred HHHHHHHHHHHHhc---CCCCCHHHHHHHHH-hcCC-CHHHHHHHHH
Confidence 88777665544332 34568999999885 4443 3454444444
No 183
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.13 E-value=1.1e-09 Score=105.90 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=111.4
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
-+++++|++|+|||.+++.++...... ..++..++++..... +. ......+|++|
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~-~~~~~~i~~~~~~~~------~~------------------~~~~~~~liiD 97 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYG-GRNARYLDAASPLLA------FD------------------FDPEAELYAVD 97 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEehHHhHHH------Hh------------------hcccCCEEEEe
Confidence 368999999999999999999987554 456777777654211 10 01234699999
Q ss_pred cCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchh
Q psy1308 378 EVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVT 457 (607)
Q Consensus 378 Eiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (607)
|++.+++..+..|+.+++... . ....++|++++....
T Consensus 98 di~~l~~~~~~~L~~~~~~~~--~-------~~~~~vl~~~~~~~~---------------------------------- 134 (227)
T PRK08903 98 DVERLDDAQQIALFNLFNRVR--A-------HGQGALLVAGPAAPL---------------------------------- 134 (227)
T ss_pred ChhhcCchHHHHHHHHHHHHH--H-------cCCcEEEEeCCCCHH----------------------------------
Confidence 999999999999999886421 0 122356777663211
Q ss_pred cchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccC
Q psy1308 458 ISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGY 535 (607)
Q Consensus 458 ~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~ 535 (607)
...+. +++.+|+. ..+.+.|++.++...++.... . ..+ +.++++++++|++
T Consensus 135 --------------~~~l~-~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~----~----~~~--v~l~~~al~~L~~-- 187 (227)
T PRK08903 135 --------------ALPLR-EDLRTRLGWGLVYELKPLSDADKIAALKAAA----A----ERG--LQLADEVPDYLLT-- 187 (227)
T ss_pred --------------hCCCC-HHHHHHHhcCeEEEecCCCHHHHHHHHHHHH----H----HcC--CCCCHHHHHHHHH--
Confidence 01133 77888884 578889999887666544222 1 123 6789999999985
Q ss_pred CCCCCccchhHHHHHH
Q psy1308 536 DVHYGARSIKHEVERQ 551 (607)
Q Consensus 536 ~~~~GaR~L~~~i~~~ 551 (607)
.|+++.|.|++.++..
T Consensus 188 ~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 188 HFRRDMPSLMALLDAL 203 (227)
T ss_pred hccCCHHHHHHHHHHH
Confidence 6999999999999874
No 184
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.12 E-value=1.6e-09 Score=118.34 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=86.6
Q ss_pred hHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCc----------EEecCceEEEEecCcchHHHHHHHhhh
Q psy1308 363 TKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGK----------TIECKDAIFVMTSNLASNEIAQHALQL 432 (607)
Q Consensus 363 ~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~----------~~~~~~~~iI~tsn~~~~~i~~~~~~~ 432 (607)
.+.+.++++|+++|||++.+++..|..|+++++++++...++. .....++++|+++|.. .
T Consensus 210 ~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~--~-------- 279 (608)
T TIGR00764 210 AGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD--D-------- 279 (608)
T ss_pred CCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH--H--------
Confidence 5677889999999999999999999999999999998765431 1123477899999832 0
Q ss_pred hhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccc---ceeeec---cCCHHHHHHHHHHHH
Q psy1308 433 RKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRIN---EIVYFL---PFSKSELHTLVCREL 506 (607)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~---~iv~f~---pl~~~~~~~i~~~~l 506 (607)
...+. |+|++||+ ..+.|. |.+.+...++++ ++
T Consensus 280 ---------------------------------------l~~l~-~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~-~i 318 (608)
T TIGR00764 280 ---------------------------------------LEGMH-PALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ-FV 318 (608)
T ss_pred ---------------------------------------HhhcC-HHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH-HH
Confidence 11244 89999998 334443 445566555533 23
Q ss_pred HHHHHHHhhcCCcEEEeCHhHHHHHHccCC--------CCCCccchhHHHHH
Q psy1308 507 NFWAKKALDKHNINIVWDIDVETILADGYD--------VHYGARSIKHEVER 550 (607)
Q Consensus 507 ~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~--------~~~GaR~L~~~i~~ 550 (607)
.. ++. +.|....++++++..|.+.+. ++...|.|.+.+..
T Consensus 319 ~~---~~~-r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~ 366 (608)
T TIGR00764 319 AQ---EVK-KDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRA 366 (608)
T ss_pred HH---HHH-HhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 22 222 223344789999888764222 34445666655544
No 185
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.11 E-value=7e-10 Score=111.99 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=82.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-----------CCc-eEEeeccc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-----------KEA-FIRLDMSE 336 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-----------~~~-~~~l~~a~ 336 (607)
.++||+.++..+...+..... -.+++.|++|+|||.+++.++..+.... ..+ +...+|..
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~--------g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 76 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKI--------GGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRI 76 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCC--------CeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhh
Confidence 488999999887555443221 2688999999999999999998873210 001 11111111
Q ss_pred c-------------------cccchhHhhhcCCCC----CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHh
Q psy1308 337 Y-------------------QEKHEVAKLIGAPPG----YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQL 393 (607)
Q Consensus 337 ~-------------------~~~~~~~~llg~~~g----~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~ 393 (607)
. ..+.....++|...- ..| ....-.+.+.++.+|++|+|||+.+++.+|..|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g--~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~ 154 (337)
T TIGR02030 77 RVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEG--VKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDV 154 (337)
T ss_pred hhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcC--CEEeecCcceeccCCEEEecChHhCCHHHHHHHHHH
Confidence 0 000011123332100 000 000122456678889999999999999999999999
Q ss_pred hccceeec-CCCcEEe-cCceEEEEecC
Q psy1308 394 FDEGRLTD-GKGKTIE-CKDAIFVMTSN 419 (607)
Q Consensus 394 ~~~~~~~~-~~g~~~~-~~~~~iI~tsn 419 (607)
+++|..+- ..|.... ....++|.|+|
T Consensus 155 l~~g~~~v~r~G~~~~~~~r~iviat~n 182 (337)
T TIGR02030 155 AASGWNVVEREGISIRHPARFVLVGSGN 182 (337)
T ss_pred HHhCCeEEEECCEEEEcCCCEEEEeccc
Confidence 99886322 2233322 24556666665
No 186
>KOG0736|consensus
Probab=99.10 E-value=1.7e-09 Score=114.62 Aligned_cols=213 Identities=23% Similarity=0.321 Sum_probs=130.1
Q ss_pred HHhHhhhhHHHHHHHHHHHHHh---hCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc
Q psy1308 266 LKDRIVGQESAINIISAAIKRK---ENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341 (607)
Q Consensus 266 l~~~i~Gq~~ai~~l~~~i~~~---~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~ 341 (607)
-|..+-|-++....+...++.. ..-++..-++- -++|+||||||||.+||++|....-. |. ...+..
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~----Fl-----SVKGPE 740 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN----FL-----SVKGPE 740 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee----EE-----eecCHH
Confidence 3456777888888887777542 11122222322 68999999999999999999765322 33 344555
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHH-------------HHHHHHHhhccceeecCCCcEEe
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD-------------VLTVLLQLFDEGRLTDGKGKTIE 408 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~-------------~~~~Ll~~~~~~~~~~~~g~~~~ 408 (607)
.+..++|..+..+ ....+..+.+..|||||||+|.+-|. ++..||-=+|. +.+. +
T Consensus 741 LLNMYVGqSE~NV-----R~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg--ls~~-----~ 808 (953)
T KOG0736|consen 741 LLNMYVGQSEENV-----REVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG--LSDS-----S 808 (953)
T ss_pred HHHHHhcchHHHH-----HHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc--ccCC-----C
Confidence 5666666443322 35667778888999999999998765 45555554441 1111 3
Q ss_pred cCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccccee
Q psy1308 409 CKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIV 488 (607)
Q Consensus 409 ~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv 488 (607)
...++||-+||. .+++.++| +| | +|||..+
T Consensus 809 s~~VFViGATNR-------------------------------------------PDLLDpAL---LR-P---GRFDKLv 838 (953)
T KOG0736|consen 809 SQDVFVIGATNR-------------------------------------------PDLLDPAL---LR-P---GRFDKLV 838 (953)
T ss_pred CCceEEEecCCC-------------------------------------------ccccChhh---cC-C---CccceeE
Confidence 467788889992 12233333 22 3 5999998
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHHHHHHHHH
Q psy1308 489 YFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVVSQLAAAH 560 (607)
Q Consensus 489 ~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~ 560 (607)
..-|-+.++-..-+ |+.+.+++ .+++++ +..+++...+.+-.-.+-..+..+...++.+.+
T Consensus 839 yvG~~~d~esk~~v---L~AlTrkF--------kLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i 900 (953)
T KOG0736|consen 839 YVGPNEDAESKLRV---LEALTRKF--------KLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI 900 (953)
T ss_pred EecCCccHHHHHHH---HHHHHHHc--------cCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHH
Confidence 88886554443222 44444443 345554 344555455555444577788888887776655
No 187
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2e-09 Score=114.88 Aligned_cols=199 Identities=19% Similarity=0.268 Sum_probs=122.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCc--eEEe-ecccc--cccch
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEA--FIRL-DMSEY--QEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~--~~~l-~~a~~--~~~~~ 342 (607)
..++||+.++..+...+..... |-.++|+||+|+|||.+++.+++.++..+..+ +-.. .|... ..+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l-------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL-------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCc
Confidence 4689999999999888775431 22569999999999999999999986421111 0000 00000 00000
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
+..+-+ .+..+.+.-..+.+.+.. ....+++|||++.++...++.|++.+++. ..+++||+++
T Consensus 87 v~el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-----------~~~t~~Il~t 153 (504)
T PRK14963 87 VLEIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-----------PEHVIFILAT 153 (504)
T ss_pred eEEecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-----------CCCEEEEEEc
Confidence 111100 001111111122222222 24679999999999999999999999852 2466788887
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~ 498 (607)
+.. . .+. +.+.+|. ..+.|.|++.+++
T Consensus 154 ~~~-~--------------------------------------------------kl~-~~I~SRc-~~~~f~~ls~~el 180 (504)
T PRK14963 154 TEP-E--------------------------------------------------KMP-PTILSRT-QHFRFRRLTEEEI 180 (504)
T ss_pred CCh-h--------------------------------------------------hCC-hHHhcce-EEEEecCCCHHHH
Confidence 621 0 011 5566776 4789999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 499 HTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 499 ~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
...+...+.. .| +.++++++++|+. . ..+..|.+.+.+++.
T Consensus 181 ~~~L~~i~~~--------eg--i~i~~~Al~~ia~-~-s~GdlR~aln~Lekl 221 (504)
T PRK14963 181 AGKLRRLLEA--------EG--REAEPEALQLVAR-L-ADGAMRDAESLLERL 221 (504)
T ss_pred HHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHHH
Confidence 9887766642 13 3468999998874 1 235666666666654
No 188
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=4.3e-10 Score=116.16 Aligned_cols=167 Identities=17% Similarity=0.276 Sum_probs=103.9
Q ss_pred HhHhhhhHHHHHHHHHHHHHhhCCCCCCCC--CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 267 KDRIVGQESAINIISAAIKRKENGWTDDDH--PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 267 ~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~--p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
+..++||+.+++.+..++............ |-.++|+||+|+|||.+|+.+++.+...+... -.|..- ....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~---~~Cg~C---~~C~ 77 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDE---PGCGEC---RACR 77 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCC---CCCCCC---HHHH
Confidence 346899999999999999876533222222 23699999999999999999999876532110 011100 1111
Q ss_pred hhh-cCCCC---------CccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 345 KLI-GAPPG---------YLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 345 ~ll-g~~~g---------~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
.+. |..|. ..+.++-..+...+... ++.|++|||+|++++..++.||+.+|+.. .
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~-----------~ 146 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP-----------P 146 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-----------C
Confidence 111 11111 11111112233333333 35699999999999999999999998632 3
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
+++||++|+.. .. +. |-+.+|. ..+.|
T Consensus 147 ~~~fIL~a~~~-~~--------------------------------------------------ll-pTIrSRc-~~i~f 173 (394)
T PRK07940 147 RTVWLLCAPSP-ED--------------------------------------------------VL-PTIRSRC-RHVAL 173 (394)
T ss_pred CCeEEEEECCh-HH--------------------------------------------------Ch-HHHHhhC-eEEEC
Confidence 45666666621 11 11 6677787 57888
Q ss_pred ccCCHHHHHHHHH
Q psy1308 491 LPFSKSELHTLVC 503 (607)
Q Consensus 491 ~pl~~~~~~~i~~ 503 (607)
.|++.+++.+++.
T Consensus 174 ~~~~~~~i~~~L~ 186 (394)
T PRK07940 174 RTPSVEAVAEVLV 186 (394)
T ss_pred CCCCHHHHHHHHH
Confidence 8998888877765
No 189
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.09 E-value=3.8e-09 Score=112.31 Aligned_cols=133 Identities=23% Similarity=0.298 Sum_probs=87.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc--------
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE-------- 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~-------- 339 (607)
..+.||..+++.+..++. + .-++++.||+|+|||.+++.++..+.... +-..++.+....
T Consensus 192 ~dv~Gq~~~~~al~~aa~----~------g~~vlliG~pGsGKTtlar~l~~llp~~~--~~~~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA----G------GHNLLLFGPPGSGKTMLASRLQGILPPLT--NEEAIETARIWSLVGKLIDR 259 (499)
T ss_pred HHhcCcHHHHhhhhhhcc----C------CCEEEEEecCCCCHHHHHHHHhcccCCCC--CcEEEeccccccchhhhccc
Confidence 358889888766554432 1 12689999999999999999998664321 111222211100
Q ss_pred -----------cc--hhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceee--cCCC
Q psy1308 340 -----------KH--EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLT--DGKG 404 (607)
Q Consensus 340 -----------~~--~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~--~~~g 404 (607)
++ ....++|. | .....+.+..+++||+||||++++++.+|+.|++.|+++.++ ..++
T Consensus 260 ~~~~~~Pf~~p~~s~s~~~~~gg--g------~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~ 331 (499)
T TIGR00368 260 KQIKQRPFRSPHHSASKPALVGG--G------PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASA 331 (499)
T ss_pred cccccCCccccccccchhhhhCC--c------cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCc
Confidence 00 01122321 0 012345678889999999999999999999999999999864 3334
Q ss_pred cEEecCceEEEEecCc
Q psy1308 405 KTIECKDAIFVMTSNL 420 (607)
Q Consensus 405 ~~~~~~~~~iI~tsn~ 420 (607)
......++++|+++|-
T Consensus 332 ~~~~pa~frlIaa~Np 347 (499)
T TIGR00368 332 KIFYPARFQLVAAMNP 347 (499)
T ss_pred ceeccCCeEEEEecCC
Confidence 4444578899999994
No 190
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.09 E-value=2.3e-09 Score=111.04 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=119.8
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC-----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRKENG-----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~-----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
..+.|.+..++.+...+...... ...-..|..++|+||+|+|||.+++.++..+.. +|+.+..+.+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~----~fi~i~~s~l----- 215 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA----TFIRVVGSEF----- 215 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC----CEEEEehHHH-----
Confidence 35788888888887776432110 011123558999999999999999999987643 4777765433
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
...++|..+. .-..+....+....+||||||||.+ +..++..+.+++..-.-.+ ...+
T Consensus 216 ~~k~~ge~~~-----~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~------~~~~ 284 (398)
T PTZ00454 216 VQKYLGEGPR-----MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD------QTTN 284 (398)
T ss_pred HHHhcchhHH-----HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC------CCCC
Confidence 2333332111 0112334445566799999999975 2456666666664211001 1246
Q ss_pred eEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--ccccceee
Q psy1308 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEIVY 489 (607)
Q Consensus 412 ~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~iv~ 489 (607)
++||+|||.. +. + .|.++ +|||..+.
T Consensus 285 v~VI~aTN~~-d~--------------------------------------------------L-DpAllR~GRfd~~I~ 312 (398)
T PTZ00454 285 VKVIMATNRA-DT--------------------------------------------------L-DPALLRPGRLDRKIE 312 (398)
T ss_pred EEEEEecCCc-hh--------------------------------------------------C-CHHHcCCCcccEEEE
Confidence 7899999931 10 1 14444 48999999
Q ss_pred eccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 490 FLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 490 f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
|.+++.++...|++..+.. .++.-.++ +..|+. ....+..+.|+..+..+...++
T Consensus 313 ~~~P~~~~R~~Il~~~~~~--------~~l~~dvd---~~~la~-~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 313 FPLPDRRQKRLIFQTITSK--------MNLSEEVD---LEDFVS-RPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred eCCcCHHHHHHHHHHHHhc--------CCCCcccC---HHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999888887755431 12222222 233332 2233444567766666554443
No 191
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=2.2e-09 Score=114.01 Aligned_cols=196 Identities=17% Similarity=0.239 Sum_probs=122.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCC---ceEEe-ecccccc--cc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE---AFIRL-DMSEYQE--KH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~---~~~~l-~~a~~~~--~~ 341 (607)
..++||+.+++.+...+..... |-.++|+||+|+|||.+++.+++.+...+.. ++... .|..... +.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl-------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~ 86 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL-------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI 86 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC-------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC
Confidence 4699999999999888864431 3357999999999999999999998643111 11000 0000000 00
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhh-------CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKK-------CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~-------~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
.+..+ + .....| ...+...++. +++-|++|||+++++++.++.||+.+++- ..+++|
T Consensus 87 dv~el-d-aas~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-----------p~~t~F 150 (535)
T PRK08451 87 DIIEM-D-AASNRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-----------PSYVKF 150 (535)
T ss_pred eEEEe-c-cccccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-----------CCceEE
Confidence 00000 0 000001 1123333332 34679999999999999999999999952 256788
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++++-. .. +. +.+.+|. ..+.|.|++
T Consensus 151 IL~ttd~-~k--------------------------------------------------L~-~tI~SRc-~~~~F~~Ls 177 (535)
T PRK08451 151 ILATTDP-LK--------------------------------------------------LP-ATILSRT-QHFRFKQIP 177 (535)
T ss_pred EEEECCh-hh--------------------------------------------------Cc-hHHHhhc-eeEEcCCCC
Confidence 8887621 11 11 6677886 678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
.+++...+...+.. .| +.+++++++.|+. . ..+..|.+-+.+++.
T Consensus 178 ~~ei~~~L~~Il~~--------EG--i~i~~~Al~~Ia~-~-s~GdlR~alnlLdqa 222 (535)
T PRK08451 178 QNSIISHLKTILEK--------EG--VSYEPEALEILAR-S-GNGSLRDTLTLLDQA 222 (535)
T ss_pred HHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCcHHHHHHHHHHH
Confidence 99988876655532 23 4578999998875 1 225556666665543
No 192
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=2.7e-09 Score=115.73 Aligned_cols=199 Identities=20% Similarity=0.269 Sum_probs=123.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEee-cccccc--cc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRLD-MSEYQE--KH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l~-~a~~~~--~~ 341 (607)
..++||+..++.+...+..... +-.++|+||+|+|||.+|+.+++.++... ..|+-... |-.+.. +.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~-------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKI-------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLM 88 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 4689999999999888875431 22689999999999999999999986431 11111110 000000 00
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
.+.++-+ ....|.+.-..+.+.+... .+-|++|||+++++...++.|++.+++. ..+++||++
T Consensus 89 dv~eida--as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-----------p~~~ifIla 155 (559)
T PRK05563 89 DVIEIDA--ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-----------PAHVIFILA 155 (559)
T ss_pred CeEEeec--cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-----------CCCeEEEEE
Confidence 0111100 0011111112233333333 3679999999999999999999999853 246788888
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
|+.. . .+. +.+.+|. ..+.|.|++.++
T Consensus 156 tt~~-~--------------------------------------------------ki~-~tI~SRc-~~~~f~~~~~~e 182 (559)
T PRK05563 156 TTEP-H--------------------------------------------------KIP-ATILSRC-QRFDFKRISVED 182 (559)
T ss_pred eCCh-h--------------------------------------------------hCc-HHHHhHh-eEEecCCCCHHH
Confidence 7621 0 011 5677787 457899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+..++...+.. .| +.+++++++.|+. +. .++.|...+.+++.
T Consensus 183 i~~~L~~i~~~--------eg--i~i~~~al~~ia~-~s-~G~~R~al~~Ldq~ 224 (559)
T PRK05563 183 IVERLKYILDK--------EG--IEYEDEALRLIAR-AA-EGGMRDALSILDQA 224 (559)
T ss_pred HHHHHHHHHHH--------cC--CCCCHHHHHHHHH-Hc-CCCHHHHHHHHHHH
Confidence 88886655531 13 4568888888875 22 35666666666543
No 193
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=2e-09 Score=117.25 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=121.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC---CceEEe-ecccccc--cc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK---EAFIRL-DMSEYQE--KH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~---~~~~~l-~~a~~~~--~~ 341 (607)
..++||+..++.+...+..... |-.++|+||+|+|||.+++.+++.++.... .++-.. .|..+.. +.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~-------~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRV-------AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 4689999999999888765321 235799999999999999999999864311 111000 0000000 00
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
.+..+-| .+..|.++-..+.+.+... .+.|++|||+++++...++.|++.+|+. ..+++||++
T Consensus 89 d~~eid~--~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-----------p~~~~fIl~ 155 (576)
T PRK14965 89 DVFEIDG--ASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-----------PPHVKFIFA 155 (576)
T ss_pred Ceeeeec--cCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-----------CCCeEEEEE
Confidence 0011101 0111111222233333333 3679999999999999999999999953 257788888
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
|+-. .. +. +-+.+|. ..+.|.|++.++
T Consensus 156 t~~~-~k--------------------------------------------------l~-~tI~SRc-~~~~f~~l~~~~ 182 (576)
T PRK14965 156 TTEP-HK--------------------------------------------------VP-ITILSRC-QRFDFRRIPLQK 182 (576)
T ss_pred eCCh-hh--------------------------------------------------hh-HHHHHhh-hhhhcCCCCHHH
Confidence 8721 11 11 4566777 568899999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
+...+...+.. . .+.++++++..|+.. ..++.|...+.+++
T Consensus 183 i~~~L~~i~~~-------e---gi~i~~~al~~la~~--a~G~lr~al~~Ldq 223 (576)
T PRK14965 183 IVDRLRYIADQ-------E---GISISDAALALVARK--GDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHHHHHHH-------h---CCCCCHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 88776655532 1 245788888888741 12455655555554
No 194
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=2.9e-09 Score=113.75 Aligned_cols=198 Identities=20% Similarity=0.228 Sum_probs=121.7
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceE-Eeeccc---c--cccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFI-RLDMSE---Y--QEKH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~-~l~~a~---~--~~~~ 341 (607)
..++||+.+++.+..++..... |-.++|+||+|+|||.+|+.+++.+...+..... .-.|.. . ..+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl-------~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~ 88 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL-------THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSV 88 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCC
Confidence 3688999999998887754321 2368999999999999999999998643211000 001100 0 0000
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
.+..+=+ .+..|.++-..+...+... ++.|++|||++.++.+.++.|++.+++. ..+++||++
T Consensus 89 DiieIda--as~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-----------p~~tvfIL~ 155 (605)
T PRK05896 89 DIVELDA--ASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-----------PKHVVFIFA 155 (605)
T ss_pred ceEEecc--ccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-----------CCcEEEEEE
Confidence 0111100 0111111112222333333 3679999999999999999999999963 246788888
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
|+.. .. +. +.+.+|. .++.|.|++.++
T Consensus 156 Tt~~-~K--------------------------------------------------Ll-~TI~SRc-q~ieF~~Ls~~e 182 (605)
T PRK05896 156 TTEF-QK--------------------------------------------------IP-LTIISRC-QRYNFKKLNNSE 182 (605)
T ss_pred CCCh-Hh--------------------------------------------------hh-HHHHhhh-hhcccCCCCHHH
Confidence 7621 10 11 5677787 478999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
+..++...+.. .| +.+++++++.|+. .. .+..|...+.+++
T Consensus 183 L~~~L~~il~k--------eg--i~Is~eal~~La~-lS-~GdlR~AlnlLek 223 (605)
T PRK05896 183 LQELLKSIAKK--------EK--IKIEDNAIDKIAD-LA-DGSLRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHHH--------cC--CCCCHHHHHHHHH-Hc-CCcHHHHHHHHHH
Confidence 98887665542 12 4578888888875 21 2446666666654
No 195
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=3.3e-09 Score=112.18 Aligned_cols=198 Identities=17% Similarity=0.243 Sum_probs=122.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC----CceEE-eecccccc--c
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK----EAFIR-LDMSEYQE--K 340 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~----~~~~~-l~~a~~~~--~ 340 (607)
..++||+.++..+...+..... |-.++|+||+|+|||.+|+.+++.+..... .++.. .+|..+.. +
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i-------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA-------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 4689999999998888865431 336899999999999999999999865311 11100 01111100 0
Q ss_pred chhHhhhcCCCCCccCCCCchhhHHHh----hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEE
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQLTKRLK----KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVM 416 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l~~~~~----~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ 416 (607)
..+.++-| ....|.++-..+.+.+. .+++.+++|||+++++.+.++.|++.+++.. .+++||+
T Consensus 90 ~d~~~i~g--~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-----------~~~~~Il 156 (451)
T PRK06305 90 LDVLEIDG--ASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-----------QHVKFFL 156 (451)
T ss_pred CceEEeec--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-----------CCceEEE
Confidence 01111111 01122111112222222 2457899999999999999999999999621 3567888
Q ss_pred ecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHH
Q psy1308 417 TSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKS 496 (607)
Q Consensus 417 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~ 496 (607)
+++-- .. +. +.+.+|. .++.|.|++.+
T Consensus 157 ~t~~~-~k--------------------------------------------------l~-~tI~sRc-~~v~f~~l~~~ 183 (451)
T PRK06305 157 ATTEI-HK--------------------------------------------------IP-GTILSRC-QKMHLKRIPEE 183 (451)
T ss_pred EeCCh-Hh--------------------------------------------------cc-hHHHHhc-eEEeCCCCCHH
Confidence 77611 00 11 5567777 46899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 497 ELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 497 ~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
++..++...+.. . .+.+++++++.|+. +. .++.|.+-+.+++
T Consensus 184 el~~~L~~~~~~--------e--g~~i~~~al~~L~~-~s-~gdlr~a~~~Lek 225 (451)
T PRK06305 184 TIIDKLALIAKQ--------E--GIETSREALLPIAR-AA-QGSLRDAESLYDY 225 (451)
T ss_pred HHHHHHHHHHHH--------c--CCCCCHHHHHHHHH-Hc-CCCHHHHHHHHHH
Confidence 998887655532 1 24578889988875 22 3456666666654
No 196
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=4.2e-09 Score=114.82 Aligned_cols=198 Identities=22% Similarity=0.304 Sum_probs=122.7
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCC-ceEEe-eccc-ccccchhH
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE-AFIRL-DMSE-YQEKHEVA 344 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~-~~~~l-~~a~-~~~~~~~~ 344 (607)
..++||+.+++.+..++..... +-.++|+||+|+|||.+|+.+|+.++..... .+.+. .|.. ...+..+.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl-------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKI-------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE
Confidence 4689999999999888875431 2257999999999999999999998653110 00000 1110 00010110
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
. +...+..|.++-..+.+.+... ++.|++|||++.++.+.++.|++.+++. ...++||++|+.
T Consensus 91 e--idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-----------P~~tifILaTte 157 (725)
T PRK07133 91 E--MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-----------PKHVIFILATTE 157 (725)
T ss_pred E--EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-----------CCceEEEEEcCC
Confidence 0 1111112222222334444433 3679999999999999999999999953 246678888761
Q ss_pred chHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHH
Q psy1308 421 ASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHT 500 (607)
Q Consensus 421 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~ 500 (607)
. .. +. +.+.+|+ ..+.|.|++.+++..
T Consensus 158 ~-~K--------------------------------------------------Ll-~TI~SRc-q~ieF~~L~~eeI~~ 184 (725)
T PRK07133 158 V-HK--------------------------------------------------IP-LTILSRV-QRFNFRRISEDEIVS 184 (725)
T ss_pred h-hh--------------------------------------------------hh-HHHHhhc-eeEEccCCCHHHHHH
Confidence 1 10 11 5678888 478999999999988
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 501 LVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 501 i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
++...+.. .| +.+++++++.|+. . ..++.|.+.+.+++
T Consensus 185 ~L~~il~k--------eg--I~id~eAl~~LA~-l-S~GslR~AlslLek 222 (725)
T PRK07133 185 RLEFILEK--------EN--ISYEKNALKLIAK-L-SSGSLRDALSIAEQ 222 (725)
T ss_pred HHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHH
Confidence 87765432 12 4567888888764 1 12445555555543
No 197
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.06 E-value=1.9e-09 Score=117.68 Aligned_cols=193 Identities=19% Similarity=0.144 Sum_probs=122.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~l 376 (607)
.+++.|++|+|||.+++.++..+.. ..+|+++..... ...++|...-+-....+ ....+.+..+++|+||+
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~--~~pfv~i~~~~t-----~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPP--IMPFVELPLGVT-----EDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCc--CCCeEecCcccc-----hhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence 8999999999999999999998765 346888875321 23455532100000000 01123456788899999
Q ss_pred ecCCccCHHHHHHHHHhhccceeecC--CCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCc
Q psy1308 377 DEVDKAHPDVLTVLLQLFDEGRLTDG--KGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNL 454 (607)
Q Consensus 377 DEiek~~~~~~~~Ll~~~~~~~~~~~--~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (607)
|||+++++.+|+.|+++|++|.++.. +.......++++|+|+|....
T Consensus 91 DEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~------------------------------- 139 (589)
T TIGR02031 91 DMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG------------------------------- 139 (589)
T ss_pred cchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc-------------------------------
Confidence 99999999999999999999985432 233333467889999883210
Q ss_pred chhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC-CHHHHHHHHHHHHHHHH-----------HHHh--hcCCcE
Q psy1308 455 DVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF-SKSELHTLVCRELNFWA-----------KKAL--DKHNIN 520 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl-~~~~~~~i~~~~l~~~~-----------~~~~--~~~~i~ 520 (607)
...|+ +.|++||+..+...++ +.++-.+|+...+.... +++. ...--.
T Consensus 140 -----------------~g~L~-~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~ 201 (589)
T TIGR02031 140 -----------------GGGLP-DHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQ 201 (589)
T ss_pred -----------------cCCCC-HHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCC
Confidence 12354 8999999875544443 44555667666542211 0110 111235
Q ss_pred EEeCHhHHHHHHccCCCCCCccchhHHH
Q psy1308 521 IVWDIDVETILADGYDVHYGARSIKHEV 548 (607)
Q Consensus 521 l~~~~~a~~~L~~~~~~~~GaR~L~~~i 548 (607)
+.++++++++|+. +.-..|+.++|..+
T Consensus 202 V~i~~~~~~~l~~-~~~~~gv~s~Ra~i 228 (589)
T TIGR02031 202 VTISAEQVKELVL-TAASLGISGHRADL 228 (589)
T ss_pred ccCCHHHHHHHHH-HHHHcCCCCccHHH
Confidence 7789999999875 33456665566555
No 198
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=2.6e-09 Score=115.10 Aligned_cols=199 Identities=19% Similarity=0.229 Sum_probs=119.6
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC---CceEEee-cccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK---EAFIRLD-MSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~---~~~~~l~-~a~~~~~~~~ 343 (607)
..++||+.+++.+..++..... +-.++|+||+|+|||.+|+.+++.++.... .++-... |-.+.. ...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~-------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~-~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL-------HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS-GRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc-CCC
Confidence 3689999999998888775431 225789999999999999999999865311 1111000 000000 000
Q ss_pred HhhhcCCCC-CccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 344 AKLIGAPPG-YLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 344 ~~llg~~~g-~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
..++...++ ..+.++-..+.+.+.. ..+.|++|||+++++.+.++.||+.+++. ..+++||++|
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-----------p~~~~fIL~t 156 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-----------PEHVKFILAT 156 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-----------CCCEEEEEEe
Confidence 000000000 1111111112222222 23579999999999999999999999963 2467788887
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~ 498 (607)
+-. . .+. +-+.+|. .++.|.|++.+++
T Consensus 157 ~d~-~--------------------------------------------------kil-~tI~SRc-~~~~f~~l~~~~i 183 (527)
T PRK14969 157 TDP-Q--------------------------------------------------KIP-VTVLSRC-LQFNLKQMPPPLI 183 (527)
T ss_pred CCh-h--------------------------------------------------hCc-hhHHHHH-HHHhcCCCCHHHH
Confidence 611 0 011 4467777 6789999999988
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 499 HTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 499 ~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
.+.+...+.. .| +.+++++++.|+. + ..+..|..-+.+++
T Consensus 184 ~~~L~~il~~--------eg--i~~~~~al~~la~-~-s~Gslr~al~lldq 223 (527)
T PRK14969 184 VSHLQHILEQ--------EN--IPFDATALQLLAR-A-AAGSMRDALSLLDQ 223 (527)
T ss_pred HHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHH
Confidence 8876655531 13 4578889888875 2 13446655555554
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=5.8e-10 Score=99.01 Aligned_cols=114 Identities=31% Similarity=0.535 Sum_probs=76.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCC---CCccCCCCchhhHHHhhCCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP---GYLGHDDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~---g~~g~~~~~~l~~~~~~~~~~vl~ 375 (607)
++++.||+|+|||.+++.+++.+ ..++..+.++..... ..++|... +...+.+ +.+...++ .+++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~~~---~dl~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~ 70 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----GRPVIRINCSSDTTE---EDLIGSYDPSNGQFEFKD-GPLVRAMR--KGGILV 70 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----TCEEEEEE-TTTSTH---HHHHCEEET-TTTTCEEE--CCCTTHH--EEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----hcceEEEEecccccc---ccceeeeeeccccccccc-cccccccc--ceeEEE
Confidence 47899999999999999999998 345888888776553 45555311 2111111 22333333 578999
Q ss_pred EecCCccCHHHHHHHHHhhccceeecCC-CcEEecC-------ceEEEEecCcch
Q psy1308 376 FDEVDKAHPDVLTVLLQLFDEGRLTDGK-GKTIECK-------DAIFVMTSNLAS 422 (607)
Q Consensus 376 lDEiek~~~~~~~~Ll~~~~~~~~~~~~-g~~~~~~-------~~~iI~tsn~~~ 422 (607)
||||++++++++..|+++++++.+.... +...... +.+||+|+|-..
T Consensus 71 lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 71 LDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp ESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred ECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 9999999999999999999999887433 3333333 389999999543
No 200
>CHL00176 ftsH cell division protein; Validated
Probab=99.04 E-value=6.3e-09 Score=113.78 Aligned_cols=199 Identities=20% Similarity=0.223 Sum_probs=115.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCC----CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 269 RIVGQESAINIISAAIKRKENGW----TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~----~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.++|.+.+.+.+...+....... .....|..++|+||+|+|||.++++++... ..+|+.++++.+..
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----~~p~i~is~s~f~~----- 254 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----EVPFFSISGSEFVE----- 254 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeeeccHHHHHH-----
Confidence 47787777777766553322110 012235579999999999999999999876 34688888776532
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccC-----------HHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH-----------PDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~-----------~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
.+.|. +...-..+....+....+||||||||.+. ...+..|.+++..-. |. ....+++
T Consensus 255 ~~~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d-----g~-~~~~~Vi 323 (638)
T CHL00176 255 MFVGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD-----GF-KGNKGVI 323 (638)
T ss_pred Hhhhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc-----cc-cCCCCee
Confidence 22221 00011122333444557899999998873 333344444442110 00 0124678
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--ccccceeeec
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEIVYFL 491 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~iv~f~ 491 (607)
+|++||... .+ . |.++ +|||..+.+.
T Consensus 324 VIaaTN~~~-~L------------------------------------------D---------~ALlRpGRFd~~I~v~ 351 (638)
T CHL00176 324 VIAATNRVD-IL------------------------------------------D---------AALLRPGRFDRQITVS 351 (638)
T ss_pred EEEecCchH-hh------------------------------------------h---------hhhhccccCceEEEEC
Confidence 999998311 11 1 2232 4888899999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+++.++..+|++..+... . ..++..+..|+. -.+.+..+.|++.+.+.
T Consensus 352 lPd~~~R~~IL~~~l~~~--------~---~~~d~~l~~lA~-~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 352 LPDREGRLDILKVHARNK--------K---LSPDVSLELIAR-RTPGFSGADLANLLNEA 399 (638)
T ss_pred CCCHHHHHHHHHHHHhhc--------c---cchhHHHHHHHh-cCCCCCHHHHHHHHHHH
Confidence 999999999988776531 0 012333455553 33334556676666654
No 201
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=1.5e-09 Score=117.82 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=124.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC--C-ceEEeecccccccchhH
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK--E-AFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~--~-~~~~l~~a~~~~~~~~~ 344 (607)
..++||+..++.+...+...+. |-.++|+||+|+|||.+|+.+++.++.... . +.+.--|... ..+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri-------~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c---~~C~ 93 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRI-------AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG---EHCQ 93 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc---HHHH
Confidence 3689999999999888865431 337999999999999999999999864311 1 1000001100 0111
Q ss_pred hhh-cCC--------CCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 345 KLI-GAP--------PGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 345 ~ll-g~~--------~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
.+. |.. ...+|.++-..+.+.++.. ++.|+++||++.++...++.|++.+++- ..+
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-----------p~~ 162 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-----------PPH 162 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-----------CCC
Confidence 111 111 1122222222333334333 3679999999999999999999999952 246
Q ss_pred eEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeec
Q psy1308 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491 (607)
Q Consensus 412 ~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~ 491 (607)
++|||+++--.. .. +-+.+|. ..+.|.
T Consensus 163 ~~fIl~tte~~k---------------------------------------------------ll-~tI~SRc-q~~~f~ 189 (598)
T PRK09111 163 VKFIFATTEIRK---------------------------------------------------VP-VTVLSRC-QRFDLR 189 (598)
T ss_pred eEEEEEeCChhh---------------------------------------------------hh-HHHHhhe-eEEEec
Confidence 778887751100 11 4466777 568999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+++.+++..++...+.. . .+.++++++++|+. . ..+..|.+.+.+++.
T Consensus 190 ~l~~~el~~~L~~i~~k-------e---gi~i~~eAl~lIa~-~-a~Gdlr~al~~Ldkl 237 (598)
T PRK09111 190 RIEADVLAAHLSRIAAK-------E---GVEVEDEALALIAR-A-AEGSVRDGLSLLDQA 237 (598)
T ss_pred CCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHH-H-cCCCHHHHHHHHHHH
Confidence 99999998887666541 1 34578888888874 1 134566666666553
No 202
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=4.2e-09 Score=110.17 Aligned_cols=197 Identities=16% Similarity=0.223 Sum_probs=117.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC--Cc-eE-E--eecccccccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK--EA-FI-R--LDMSEYQEKH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~--~~-~~-~--l~~a~~~~~~ 341 (607)
..++||+.+++.+...+..... |-.++|+||+|+|||.+|+.+++.+..... ++ +. . --|... .
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~-------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c---~ 85 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV-------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC---E 85 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc-------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC---H
Confidence 4689999999988877764321 235899999999999999999999865310 00 00 0 001100 1
Q ss_pred hhHhhh-cCCCCCccC---CC--CchhhH---HHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEe
Q psy1308 342 EVAKLI-GAPPGYLGH---DD--GGQLTK---RLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIE 408 (607)
Q Consensus 342 ~~~~ll-g~~~g~~g~---~~--~~~l~~---~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~ 408 (607)
.+..+. |..+.+.-. .. ...+.. .+.. +++.++++||+++++...++.|++.+++.
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep----------- 154 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP----------- 154 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-----------
Confidence 111111 111111000 00 012222 2221 24679999999999999999999999853
Q ss_pred cCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccccee
Q psy1308 409 CKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIV 488 (607)
Q Consensus 409 ~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv 488 (607)
...++||++++. ...+ . +.+.+|. .++
T Consensus 155 ~~~t~~Il~t~~-~~kl--------------------------------------------------~-~tl~sR~-~~v 181 (397)
T PRK14955 155 PPHAIFIFATTE-LHKI--------------------------------------------------P-ATIASRC-QRF 181 (397)
T ss_pred CCCeEEEEEeCC-hHHh--------------------------------------------------H-HHHHHHH-HHh
Confidence 135567776651 1111 0 3455555 468
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 489 YFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 489 ~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
.|.|++.+++.+++...+.. . .+.++++++++|+. +. .++.|.+.+.+++
T Consensus 182 ~f~~l~~~ei~~~l~~~~~~-------~---g~~i~~~al~~l~~-~s-~g~lr~a~~~L~k 231 (397)
T PRK14955 182 NFKRIPLEEIQQQLQGICEA-------E---GISVDADALQLIGR-KA-QGSMRDAQSILDQ 231 (397)
T ss_pred hcCCCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHH-Hc-CCCHHHHHHHHHH
Confidence 89999999998887665541 1 35688999988874 21 2445655555554
No 203
>KOG0733|consensus
Probab=99.03 E-value=4.1e-09 Score=108.96 Aligned_cols=209 Identities=23% Similarity=0.267 Sum_probs=127.9
Q ss_pred HhHhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc
Q psy1308 267 KDRIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ 338 (607)
Q Consensus 267 ~~~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~ 338 (607)
|..+-++.....++..++... ..|+. .|.-+|++||||+|||.|||++|..... .|+.+-
T Consensus 510 W~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlAKAVANEag~----NFisVK----- 577 (802)
T KOG0733|consen 510 WDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLAKAVANEAGA----NFISVK----- 577 (802)
T ss_pred hhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHHHHHhhhccC----ceEeec-----
Confidence 345666777767776666432 23332 3667999999999999999999976532 355543
Q ss_pred ccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHH-----------HHHHHHHhhccceeecCCCcEE
Q psy1308 339 EKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD-----------VLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 339 ~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~-----------~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
+.....++.|..... -..+....+.+..|||||||+|.+-|. +++.||.=|+...
T Consensus 578 GPELlNkYVGESErA-----VR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~--------- 643 (802)
T KOG0733|consen 578 GPELLNKYVGESERA-----VRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE--------- 643 (802)
T ss_pred CHHHHHHHhhhHHHH-----HHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc---------
Confidence 333344444422211 123445556667899999999987543 8888888887332
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccce
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEI 487 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~i 487 (607)
+..++.+|.+||.. +++.+++ +| | +|+|.+
T Consensus 644 ~R~gV~viaATNRP-------------------------------------------DiIDpAi---LR-P---GRlDk~ 673 (802)
T KOG0733|consen 644 ERRGVYVIAATNRP-------------------------------------------DIIDPAI---LR-P---GRLDKL 673 (802)
T ss_pred cccceEEEeecCCC-------------------------------------------cccchhh---cC-C---CccCce
Confidence 34678899999932 1222222 22 4 588887
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHc--cCCCCCCccchhHHHHHHHHHHHHHHHHh
Q psy1308 488 VYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILAD--GYDVHYGARSIKHEVERQVVSQLAAAHEK 562 (607)
Q Consensus 488 v~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~--~~~~~~GaR~L~~~i~~~i~~~l~~~~l~ 562 (607)
..-.+.+.+|-..|++..... ...-+++++ ++.|+. ..+.-.||- |-..+...-+.+|-+.+..
T Consensus 674 LyV~lPn~~eR~~ILK~~tkn----------~k~pl~~dVdl~eia~~~~c~gftGAD-LaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 674 LYVGLPNAEERVAILKTITKN----------TKPPLSSDVDLDEIARNTKCEGFTGAD-LAALVREASILALRESLFE 740 (802)
T ss_pred eeecCCCHHHHHHHHHHHhcc----------CCCCCCcccCHHHHhhcccccCCchhh-HHHHHHHHHHHHHHHHHhh
Confidence 665556888888886544431 122334444 445542 233445654 7777877777777666553
No 204
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=2.1e-09 Score=114.24 Aligned_cols=199 Identities=21% Similarity=0.301 Sum_probs=122.8
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEE-eecccccc--cc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIR-LDMSEYQE--KH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~-l~~a~~~~--~~ 341 (607)
..++||+.++..+...+..... +-.++|+||+|+|||.+|+.+++.++... ..|+.. .+|..+.. +.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i-------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~ 88 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRV-------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFP 88 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCC
Confidence 3688999999999888865431 22578999999999999999999986321 111111 01111111 00
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhCC----CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKCP----NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~~----~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
.+..+-+ ....|.++-..+...+...| +.|+++||++.++.+.++.|++.+++. ..+++||++
T Consensus 89 d~~eida--as~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-----------p~~~v~Il~ 155 (486)
T PRK14953 89 DLIEIDA--ASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-----------PPRTIFILC 155 (486)
T ss_pred cEEEEeC--ccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-----------CCCeEEEEE
Confidence 0100100 00111111123333444333 579999999999999999999999853 235667776
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
++- ... +. +.+.+|. ..+.|.|++.++
T Consensus 156 tt~-~~k--------------------------------------------------l~-~tI~SRc-~~i~f~~ls~~e 182 (486)
T PRK14953 156 TTE-YDK--------------------------------------------------IP-PTILSRC-QRFIFSKPTKEQ 182 (486)
T ss_pred ECC-HHH--------------------------------------------------HH-HHHHHhc-eEEEcCCCCHHH
Confidence 651 111 11 4456666 468999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+..++...+.. .| +.++++++++|+. + ..++.|.+-+.+++.
T Consensus 183 l~~~L~~i~k~--------eg--i~id~~al~~La~-~-s~G~lr~al~~Ldkl 224 (486)
T PRK14953 183 IKEYLKRICNE--------EK--IEYEEKALDLLAQ-A-SEGGMRDAASLLDQA 224 (486)
T ss_pred HHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHHH
Confidence 98887665542 23 4678999999875 2 236677666666654
No 205
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=7e-09 Score=112.05 Aligned_cols=196 Identities=14% Similarity=0.180 Sum_probs=122.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC---CceEEe-ecccccc--cc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK---EAFIRL-DMSEYQE--KH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~---~~~~~l-~~a~~~~--~~ 341 (607)
..++||+.++..+...+..... |-.++|+||+|+|||.+|+.+++.+..... .++... +|-.... +.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i-------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~ 88 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKI-------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSL 88 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCC-------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCC
Confidence 4699999999999888875431 236899999999999999999999864311 111110 0000000 00
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHH---h----hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRL---K----KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~---~----~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
.+..+-|.. ..+ ...+..+. . .+++.++++||++.++...++.|++.+++. ..+++|
T Consensus 89 dv~~idgas--~~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-----------p~~~vf 152 (563)
T PRK06647 89 DVIEIDGAS--NTS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-----------PPYIVF 152 (563)
T ss_pred CeEEecCcc--cCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-----------CCCEEE
Confidence 011110100 000 01222222 2 234679999999999999999999999852 246788
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++++-- .. +. +.+.+|.. .+.|.|++
T Consensus 153 I~~tte~-~k--------------------------------------------------L~-~tI~SRc~-~~~f~~l~ 179 (563)
T PRK06647 153 IFATTEV-HK--------------------------------------------------LP-ATIKSRCQ-HFNFRLLS 179 (563)
T ss_pred EEecCCh-HH--------------------------------------------------hH-HHHHHhce-EEEecCCC
Confidence 8887621 10 11 55677774 68899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
.+++.+++...+.. .+ +.++++++.+|+. . ..+..|.+.+.+++.
T Consensus 180 ~~el~~~L~~i~~~--------eg--i~id~eAl~lLa~-~-s~GdlR~alslLdkl 224 (563)
T PRK06647 180 LEKIYNMLKKVCLE--------DQ--IKYEDEALKWIAY-K-STGSVRDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHHH
Confidence 99988776554431 13 4578999999975 1 235577777766653
No 206
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.02 E-value=3.5e-09 Score=119.76 Aligned_cols=204 Identities=20% Similarity=0.288 Sum_probs=127.4
Q ss_pred HhHhhhhHHHHHHHHHHHHHhhCC-----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc
Q psy1308 267 KDRIVGQESAINIISAAIKRKENG-----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341 (607)
Q Consensus 267 ~~~i~Gq~~ai~~l~~~i~~~~~~-----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~ 341 (607)
+..+.|++...+.+.+.+...... ......|..++|+||+|+|||.++++++..+. .+|+.+..+.+.
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~----~~fi~v~~~~l~--- 524 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG----ANFIAVRGPEIL--- 524 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----CCEEEEehHHHh---
Confidence 345788888888887776532110 00112344789999999999999999998864 458888775432
Q ss_pred hhHhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccCH------------HHHHHHHHhhccceeecCCCcEE
Q psy1308 342 EVAKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAHP------------DVLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~~------------~~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
.+ |+|..+. ..+....+....+||||||||.+.+ .+.+.|+..++.- .
T Consensus 525 --~~-------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~---------~ 586 (733)
T TIGR01243 525 --SK-------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI---------Q 586 (733)
T ss_pred --hc-------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc---------c
Confidence 22 3332211 2334445666789999999998632 3556677776621 1
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--cccc
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRIN 485 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~ 485 (607)
...+++||+|||.... . .|.++ +|||
T Consensus 587 ~~~~v~vI~aTn~~~~---------------------------------------------------l-d~allRpgRfd 614 (733)
T TIGR01243 587 ELSNVVVIAATNRPDI---------------------------------------------------L-DPALLRPGRFD 614 (733)
T ss_pred CCCCEEEEEeCCChhh---------------------------------------------------C-CHhhcCCCccc
Confidence 2357899999993110 1 14454 4999
Q ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHh-HHHHHHccCCCCCCccchhHHHHHHHHHHHHHHH
Q psy1308 486 EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDID-VETILADGYDVHYGARSIKHEVERQVVSQLAAAH 560 (607)
Q Consensus 486 ~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~-a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~ 560 (607)
.++.+.+++.++..+|++.... +.. ++++ -++.|++ ....+....++..+.+....++-+.+
T Consensus 615 ~~i~v~~Pd~~~R~~i~~~~~~----------~~~--~~~~~~l~~la~-~t~g~sgadi~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 615 RLILVPPPDEEARKEIFKIHTR----------SMP--LAEDVDLEELAE-MTEGYTGADIEAVCREAAMAALRESI 677 (733)
T ss_pred eEEEeCCcCHHHHHHHHHHHhc----------CCC--CCccCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999888899999988764332 111 1222 2455654 33334456788888777777665544
No 207
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.01 E-value=3.5e-09 Score=110.38 Aligned_cols=167 Identities=23% Similarity=0.281 Sum_probs=102.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC-----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 269 RIVGQESAINIISAAIKRKENG-----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~-----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
.+.|.+..++.+...+...... ......|..++|+||+|||||.++++++..+.. +|+.+..+.+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~----~fi~V~~seL~----- 254 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA----TFLRVVGSELI----- 254 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC----CEEEEecchhh-----
Confidence 4678888888887776532110 011223457899999999999999999987643 47777655432
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccC-----------HHHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH-----------PDVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~-----------~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
..++|..+. .-..+....+....+||||||||.+- .+++..+++++..-. |. ....++
T Consensus 255 ~k~~Ge~~~-----~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld-----g~-~~~~~V 323 (438)
T PTZ00361 255 QKYLGDGPK-----LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD-----GF-DSRGDV 323 (438)
T ss_pred hhhcchHHH-----HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh-----hh-cccCCe
Confidence 223321110 01122333344457899999998752 345666666654211 10 012467
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--ccccceeee
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEIVYF 490 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~iv~f 490 (607)
.||+|||.. +.+ .|.++ +||+..+.|
T Consensus 324 ~VI~ATNr~-d~L---------------------------------------------------DpaLlRpGRfd~~I~~ 351 (438)
T PTZ00361 324 KVIMATNRI-ESL---------------------------------------------------DPALIRPGRIDRKIEF 351 (438)
T ss_pred EEEEecCCh-HHh---------------------------------------------------hHHhccCCeeEEEEEe
Confidence 899999931 111 14444 589999999
Q ss_pred ccCCHHHHHHHHHHHHH
Q psy1308 491 LPFSKSELHTLVCRELN 507 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~ 507 (607)
.+++.++..+|+...+.
T Consensus 352 ~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 352 PNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999876543
No 208
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.01 E-value=9.1e-09 Score=106.88 Aligned_cols=196 Identities=18% Similarity=0.269 Sum_probs=119.6
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++||+..++.+...+.... .|-.++|+||+|+|||.+++.+++.+.......+. .|.... ....+.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~--~c~~c~---~c~~~~ 81 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGE--PCNECE---SCKEIN 81 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--CCCCCH---HHHHHh
Confidence 468999999999988876432 13368999999999999999999998643111010 111000 000000
Q ss_pred -cCCCCC--------ccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 348 -GAPPGY--------LGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 348 -g~~~g~--------~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
|..+.+ .+.+.-..+.+.+... ++.+|++||++.++...++.|++.+++. ..+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-----------~~~~~l 150 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-----------PEHVVF 150 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-----------ccceeE
Confidence 111110 0000001122222222 3569999999999999999999999752 135678
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++++-. .. +. +.+.+|. ..+.|.|++
T Consensus 151 Il~~~~~-~~--------------------------------------------------l~-~~l~sr~-~~~~~~~~~ 177 (355)
T TIGR02397 151 ILATTEP-HK--------------------------------------------------IP-ATILSRC-QRFDFKRIP 177 (355)
T ss_pred EEEeCCH-HH--------------------------------------------------HH-HHHHhhe-eEEEcCCCC
Confidence 8877621 11 11 4455666 467889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
.+++.+++...+.. .| +.++++++++|+. . ..++.|.+.+.+++.
T Consensus 178 ~~~l~~~l~~~~~~--------~g--~~i~~~a~~~l~~-~-~~g~~~~a~~~lekl 222 (355)
T TIGR02397 178 LEDIVERLKKILDK--------EG--IKIEDEALELIAR-A-ADGSLRDALSLLDQL 222 (355)
T ss_pred HHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCChHHHHHHHHHH
Confidence 99998887776642 13 3578899998875 2 134566666666653
No 209
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.01 E-value=5.9e-09 Score=108.18 Aligned_cols=205 Identities=21% Similarity=0.207 Sum_probs=120.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC-----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRKENG-----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~-----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
..+.|.+..++.+...+...... ......|..++++||+|+|||.+++.++..+.. +|..+..+.+
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~----~~~~v~~~~l----- 192 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA----TFIRVVGSEL----- 192 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC----CEEecchHHH-----
Confidence 35778888888887776433111 011223557999999999999999999987743 3666654332
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
...++|..... -..+....+....++|||||+|.+ ++.++..|.+++..-.-.+ ...+
T Consensus 193 ~~~~~g~~~~~-----i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~------~~~~ 261 (364)
T TIGR01242 193 VRKYIGEGARL-----VREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD------PRGN 261 (364)
T ss_pred HHHhhhHHHHH-----HHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC------CCCC
Confidence 22233211110 012233334445689999999986 4567777777765321111 1246
Q ss_pred eEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--ccccceee
Q psy1308 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEIVY 489 (607)
Q Consensus 412 ~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~iv~ 489 (607)
++||+|||... . +. +.++ +|++..+.
T Consensus 262 v~vI~ttn~~~-~--------------------------------------------------ld-~al~r~grfd~~i~ 289 (364)
T TIGR01242 262 VKVIAATNRPD-I--------------------------------------------------LD-PALLRPGRFDRIIE 289 (364)
T ss_pred EEEEEecCChh-h--------------------------------------------------CC-hhhcCcccCceEEE
Confidence 78999999321 0 00 3333 48888899
Q ss_pred eccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 490 FLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 490 f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
+.+++.++..+|+...+.. ....-.++ ...|+. ....+.++.++..+......++
T Consensus 290 v~~P~~~~r~~Il~~~~~~--------~~l~~~~~---~~~la~-~t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 290 VPLPDFEGRLEILKIHTRK--------MKLAEDVD---LEAIAK-MTEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred eCCcCHHHHHHHHHHHHhc--------CCCCccCC---HHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999997654421 11111122 344443 3344556778777665555443
No 210
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.00 E-value=1e-08 Score=104.83 Aligned_cols=183 Identities=21% Similarity=0.291 Sum_probs=117.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~ll 347 (607)
.++|++.+++.+...+.... +.+++|+||+|+|||.+++.++..+.... ...++.++.+...+...+...
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~--------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~- 88 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN--------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNK- 88 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC--------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHH-
Confidence 47799999988887775321 12579999999999999999999876542 123344433322111111111
Q ss_pred cCCCCCccCCCCchhhHHHhh-----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcch
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKK-----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLAS 422 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~-----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~ 422 (607)
+....+. .+..+|++||++.++.+.++.|++++++.. .++.+|+++|...
T Consensus 89 --------------i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-----------~~~~lIl~~~~~~ 143 (319)
T PRK00440 89 --------------IKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-----------QNTRFILSCNYSS 143 (319)
T ss_pred --------------HHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-----------CCCeEEEEeCCcc
Confidence 1111111 235699999999999999999999987421 3456788776211
Q ss_pred HHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHH
Q psy1308 423 NEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLV 502 (607)
Q Consensus 423 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~ 502 (607)
. +. +.+.+|. .++.|.|++.+++..++
T Consensus 144 ~---------------------------------------------------l~-~~l~sr~-~~~~~~~l~~~ei~~~l 170 (319)
T PRK00440 144 K---------------------------------------------------II-DPIQSRC-AVFRFSPLKKEAVAERL 170 (319)
T ss_pred c---------------------------------------------------cc-hhHHHHh-heeeeCCCCHHHHHHHH
Confidence 0 11 3455566 36899999999998887
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 503 CRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 503 ~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
...+.. .+ +.++++++++|+. . ..+..|.+-+.++.
T Consensus 171 ~~~~~~--------~~--~~i~~~al~~l~~-~-~~gd~r~~~~~l~~ 206 (319)
T PRK00440 171 RYIAEN--------EG--IEITDDALEAIYY-V-SEGDMRKAINALQA 206 (319)
T ss_pred HHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHH
Confidence 765542 13 3578999999985 2 23556665555553
No 211
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=7.3e-09 Score=107.84 Aligned_cols=186 Identities=22% Similarity=0.311 Sum_probs=120.9
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc----C--CceEEeecccc--cc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK----K--EAFIRLDMSEY--QE 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~----~--~~~~~l~~a~~--~~ 339 (607)
..++||+.+++.+...+.... -|-.++|+||+|+|||.+++.+++.+.... . ..+..+++... ..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS 89 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC
Confidence 358899999998888876532 134789999999999999999999886521 0 11222221111 10
Q ss_pred cchhHhhhcCCCCCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEE
Q psy1308 340 KHEVAKLIGAPPGYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFV 415 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI 415 (607)
...+.+++ ..+.. +++.+|++||++.+++..++.|++.+++. ..+++||
T Consensus 90 ~~~i~~l~----------------~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-----------~~~~~~I 142 (367)
T PRK14970 90 VDDIRNLI----------------DQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-----------PAHAIFI 142 (367)
T ss_pred HHHHHHHH----------------HHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-----------CCceEEE
Confidence 11111221 11111 23579999999999999999999998752 2356788
Q ss_pred EecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCH
Q psy1308 416 MTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSK 495 (607)
Q Consensus 416 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~ 495 (607)
++++... .+. +.+.+|. .++.|.|++.
T Consensus 143 l~~~~~~---------------------------------------------------kl~-~~l~sr~-~~v~~~~~~~ 169 (367)
T PRK14970 143 LATTEKH---------------------------------------------------KII-PTILSRC-QIFDFKRITI 169 (367)
T ss_pred EEeCCcc---------------------------------------------------cCC-HHHHhcc-eeEecCCccH
Confidence 7776110 011 5566666 4688999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 496 SELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 496 ~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
+++..++...+.. .| ++++++++++|+. . ..++.|.+.+.+++..
T Consensus 170 ~~l~~~l~~~~~~--------~g--~~i~~~al~~l~~-~-~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 170 KDIKEHLAGIAVK--------EG--IKFEDDALHIIAQ-K-ADGALRDALSIFDRVV 214 (367)
T ss_pred HHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-h-CCCCHHHHHHHHHHHH
Confidence 9998887766542 23 3578999999985 2 2356787777777644
No 212
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.1e-08 Score=111.20 Aligned_cols=197 Identities=16% Similarity=0.237 Sum_probs=118.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC--Cc-eEE---eecccccccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK--EA-FIR---LDMSEYQEKH 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~--~~-~~~---l~~a~~~~~~ 341 (607)
..++||+.++..+...+..... |-.++|+||+|+|||.+|+.+++.++.... ++ +.+ --|... .
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri-------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C---~ 85 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRV-------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC---E 85 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC---H
Confidence 4689999999998887764431 225899999999999999999999865310 00 000 001100 1
Q ss_pred hhHhhh-cCCCCCccCC---C--CchhhHHHhh-------CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEe
Q psy1308 342 EVAKLI-GAPPGYLGHD---D--GGQLTKRLKK-------CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIE 408 (607)
Q Consensus 342 ~~~~ll-g~~~g~~g~~---~--~~~l~~~~~~-------~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~ 408 (607)
.+..+. |..+.+.-.+ . ...+..+++. +++-|+++||+++++...++.|++.+++-
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP----------- 154 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP----------- 154 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC-----------
Confidence 111111 1111111000 0 0122222222 34679999999999999999999999963
Q ss_pred cCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccccee
Q psy1308 409 CKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIV 488 (607)
Q Consensus 409 ~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv 488 (607)
...++||++++-. .. +. +.+.+|. .++
T Consensus 155 p~~tv~IL~t~~~-~k--------------------------------------------------Ll-~TI~SRc-~~v 181 (620)
T PRK14954 155 PPHAIFIFATTEL-HK--------------------------------------------------IP-ATIASRC-QRF 181 (620)
T ss_pred CCCeEEEEEeCCh-hh--------------------------------------------------hh-HHHHhhc-eEE
Confidence 2456777776511 10 11 4566666 679
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 489 YFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 489 ~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
.|.|++.+++...+...+.. . .+.++++++++|+. . ..++.|.+-+.+++
T Consensus 182 ef~~l~~~ei~~~L~~i~~~-------e---gi~I~~eal~~La~-~-s~Gdlr~al~eLeK 231 (620)
T PRK14954 182 NFKRIPLDEIQSQLQMICRA-------E---GIQIDADALQLIAR-K-AQGSMRDAQSILDQ 231 (620)
T ss_pred ecCCCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHH-H-hCCCHHHHHHHHHH
Confidence 99999999988886655431 1 24578888888874 1 12445555554443
No 213
>KOG0727|consensus
Probab=98.98 E-value=2e-09 Score=99.44 Aligned_cols=103 Identities=31% Similarity=0.478 Sum_probs=80.1
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
|--++++||+|+|||.|++++|..- .-.|+++.-+++ +.+++|..|..+ .+...+.+.+..+++|+
T Consensus 189 prgvllygppg~gktml~kava~~t----~a~firvvgsef-----vqkylgegprmv-----rdvfrlakenapsiifi 254 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGSEF-----VQKYLGEGPRMV-----RDVFRLAKENAPSIIFI 254 (408)
T ss_pred CcceEEeCCCCCcHHHHHHHHhhcc----chheeeeccHHH-----HHHHhccCcHHH-----HHHHHHHhccCCcEEEe
Confidence 4478899999999999999999765 345999887776 788998666533 35666777777899999
Q ss_pred ecCCc-----------cCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 377 DEVDK-----------AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 377 DEiek-----------~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
||||. ++.++|..|+.++..-.-.|. ..|+-+||+||
T Consensus 255 deidaiatkrfdaqtgadrevqril~ellnqmdgfdq------~~nvkvimatn 302 (408)
T KOG0727|consen 255 DEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ------TTNVKVIMATN 302 (408)
T ss_pred ehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc------ccceEEEEecC
Confidence 99987 467899999999874432332 36788999999
No 214
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.1e-08 Score=111.85 Aligned_cols=196 Identities=19% Similarity=0.257 Sum_probs=121.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc----CCceEEe-ecccccc--c
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK----KEAFIRL-DMSEYQE--K 340 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~----~~~~~~l-~~a~~~~--~ 340 (607)
..++||+.+++.+...+..... |-.++|+||.|+|||.+++.+++.+.... ..++-.. .|..+.. +
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l-------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKL-------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 4689999999999888865431 33589999999999999999999885321 0000000 0000000 0
Q ss_pred chhHhhhcCCCCCccCCCCchhhHHH---hhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQLTKRL---KKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l~~~~---~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
..+..+-+. +..+ ...+..++ +.. ++-|++|||+++++.+.++.|++.+++- ..+++
T Consensus 90 ~n~~~ld~~--~~~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-----------p~~ti 153 (614)
T PRK14971 90 YNIHELDAA--SNNS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-----------PSYAI 153 (614)
T ss_pred CceEEeccc--ccCC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-----------CCCeE
Confidence 000011000 0000 11222322 222 3679999999999999999999999953 24678
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl 493 (607)
||++|+.. . .+. +.+.+|. .++.|.|+
T Consensus 154 fIL~tt~~-~--------------------------------------------------kIl-~tI~SRc-~iv~f~~l 180 (614)
T PRK14971 154 FILATTEK-H--------------------------------------------------KIL-PTILSRC-QIFDFNRI 180 (614)
T ss_pred EEEEeCCc-h--------------------------------------------------hch-HHHHhhh-heeecCCC
Confidence 88887611 0 011 5677777 56899999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 494 ~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+.+++..++...+.. .| +.++++++++|+.. ..++.|.+.+.+++.
T Consensus 181 s~~ei~~~L~~ia~~--------eg--i~i~~~al~~La~~--s~gdlr~al~~Lekl 226 (614)
T PRK14971 181 QVADIVNHLQYVASK--------EG--ITAEPEALNVIAQK--ADGGMRDALSIFDQV 226 (614)
T ss_pred CHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 999998776655432 23 56788899988741 135566666666553
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.96 E-value=1.1e-09 Score=92.28 Aligned_cols=108 Identities=29% Similarity=0.488 Sum_probs=66.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCC--CeEEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCP--NAVVLF 376 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~--~~vl~l 376 (607)
++++.|++|+|||.+++.+|+.+..+ |.++.++. ....+.++|.+- |.. + .+.+ . +...| ..++++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~----f~RIq~tp---dllPsDi~G~~v-~~~-~-~~~f-~-~~~GPif~~ill~ 68 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLS----FKRIQFTP---DLLPSDILGFPV-YDQ-E-TGEF-E-FRPGPIFTNILLA 68 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT------EEEEE--T---T--HHHHHEEEE-EET-T-TTEE-E-EEE-TT-SSEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCc----eeEEEecC---CCCcccceeeee-ecc-C-CCee-E-eecChhhhceeee
Confidence 47899999999999999999998654 88887742 234567776421 110 0 0110 0 11122 469999
Q ss_pred ecCCccCHHHHHHHHHhhccceeecCCCcEEec-CceEEEEecC
Q psy1308 377 DEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC-KDAIFVMTSN 419 (607)
Q Consensus 377 DEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~-~~~~iI~tsn 419 (607)
|||.+++|.+|+.||++|++++++.. |.+... ....+|+|-|
T Consensus 69 DEiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 69 DEINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQN 111 (131)
T ss_dssp ETGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-
T ss_pred cccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecC
Confidence 99999999999999999999998864 444444 4467777877
No 216
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.96 E-value=3.7e-09 Score=108.09 Aligned_cols=132 Identities=30% Similarity=0.436 Sum_probs=89.1
Q ss_pred HHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHh
Q psy1308 266 LKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345 (607)
Q Consensus 266 l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ 345 (607)
+...++|++..+..+..++.... ++++.|++|+|||.+++.+++.+.. +|.++.|...... ..
T Consensus 22 ~~~~~~g~~~~~~~~l~a~~~~~----------~vll~G~PG~gKT~la~~lA~~l~~----~~~~i~~t~~l~p---~d 84 (329)
T COG0714 22 LEKVVVGDEEVIELALLALLAGG----------HVLLEGPPGVGKTLLARALARALGL----PFVRIQCTPDLLP---SD 84 (329)
T ss_pred cCCeeeccHHHHHHHHHHHHcCC----------CEEEECCCCccHHHHHHHHHHHhCC----CeEEEecCCCCCH---HH
Confidence 33457777777776655554332 6899999999999999999999864 4999999865543 33
Q ss_pred hhcCC--------CCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEec-CceEEEE
Q psy1308 346 LIGAP--------PGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC-KDAIFVM 416 (607)
Q Consensus 346 llg~~--------~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~-~~~~iI~ 416 (607)
++|.. .+..-+..+ .+...+ .+++++|||.+++|.+|+.|+++|+++.++...-..... ...++|+
T Consensus 85 ~~G~~~~~~~~~~~~~~~~~~g-pl~~~~----~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 85 LLGTYAYAALLLEPGEFRFVPG-PLFAAV----RVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hcCchhHhhhhccCCeEEEecC-Cccccc----ceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 44421 111111111 222211 169999999999999999999999998888653221333 4456667
Q ss_pred ecC
Q psy1308 417 TSN 419 (607)
Q Consensus 417 tsn 419 (607)
|+|
T Consensus 160 T~N 162 (329)
T COG0714 160 TQN 162 (329)
T ss_pred ccC
Confidence 778
No 217
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.96 E-value=4.5e-09 Score=88.44 Aligned_cols=112 Identities=22% Similarity=0.386 Sum_probs=83.4
Q ss_pred ccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeeccc
Q psy1308 258 RKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSE 336 (607)
Q Consensus 258 ~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~ 336 (607)
..+.|+..|.+.+.||.-+.+.+..+++..... ..+++|+++.|+|++||||+.+++.||+.++..+ +.+++..-.+.
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~ 93 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIAT 93 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeeccc
Confidence 345788899999999999999999999988765 5789999999999999999999999999988754 55677766655
Q ss_pred ccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 337 YQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 337 ~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
....+.. .+- .|.. +-..++.+.+..+++++++|
T Consensus 94 ~hFP~~~-~v~----~Yk~-~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 94 HHFPHNS-NVD----EYKE-QLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred ccCCCch-HHH----HHHH-HHHHHHHHHHHhCCcCeeeC
Confidence 4433221 000 0110 11235677788888887765
No 218
>KOG0738|consensus
Probab=98.96 E-value=6.7e-09 Score=102.05 Aligned_cols=114 Identities=25% Similarity=0.280 Sum_probs=76.1
Q ss_pred hHhhhhHHHHHHHHHHHHHhh---CCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKE---NGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~---~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|..++++.+.+++.... .-+....+|- .++++||||+|||.|||++|.... ..|+-+..+.. .
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~----tTFFNVSsstl-----t 282 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG----TTFFNVSSSTL-----T 282 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc----CeEEEechhhh-----h
Confidence 468899999999988875431 1112234565 789999999999999999997653 23554444443 2
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc------------CHHHHHHHHHhhc
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA------------HPDVLTVLLQLFD 395 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~------------~~~~~~~Ll~~~~ 395 (607)
+++-|.... -...+.+..+....++|||||||.+ +..+-+.||..||
T Consensus 283 SKwRGeSEK-----lvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 283 SKWRGESEK-----LVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred hhhccchHH-----HHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 333332111 0124566667777899999999875 3447888888886
No 219
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.94 E-value=2.1e-08 Score=104.51 Aligned_cols=218 Identities=19% Similarity=0.209 Sum_probs=124.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC-----CceEEeecccccccchh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK-----EAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~-----~~~~~l~~a~~~~~~~~ 343 (607)
.+.|.+..++.+...+.....+ ..|..++++||+|+|||.+++.+.+.+..... -.++.++|........+
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~----~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRG----SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 5889999999998888765433 23457899999999999999999987643211 24667787765543222
Q ss_pred -H----hhh--cCCCCCccCCCC---chhhHHHh-hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 344 -A----KLI--GAPPGYLGHDDG---GQLTKRLK-KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 344 -~----~ll--g~~~g~~g~~~~---~~l~~~~~-~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
. .+. |......|.... ..+...+. ..+..+|+|||+|.+....+..|..++.-..... ....++
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~-----~~~~~v 166 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD-----LDNAKV 166 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-----CCCCeE
Confidence 1 222 211111111101 11222333 2345789999999994333333444432111011 112467
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccc-ceeeec
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRIN-EIVYFL 491 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~-~iv~f~ 491 (607)
.+|+++|.... ...+. +...+|+. ..+.|.
T Consensus 167 ~lI~i~n~~~~------------------------------------------------~~~l~-~~~~s~~~~~~i~f~ 197 (365)
T TIGR02928 167 GVIGISNDLKF------------------------------------------------RENLD-PRVKSSLCEEEIIFP 197 (365)
T ss_pred EEEEEECCcch------------------------------------------------HhhcC-HHHhccCCcceeeeC
Confidence 88888873110 00111 34445553 568999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHH
Q psy1308 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i 552 (607)
|++.+++.+|+...+... + . .-.++++++++++. .-...+.+|..-+.+++.+
T Consensus 198 p~~~~e~~~il~~r~~~~---~--~---~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 198 PYDAEELRDILENRAEKA---F--Y---DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred CCCHHHHHHHHHHHHHhh---c--c---CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999988766421 1 0 12377888887754 1222355665555555443
No 220
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.94 E-value=2.9e-09 Score=111.68 Aligned_cols=201 Identities=21% Similarity=0.321 Sum_probs=134.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEee-ccccccc--c
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRLD-MSEYQEK--H 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l~-~a~~~~~--~ 341 (607)
..++||+..+..+..++...+.. -.++|.||.|+|||.+||.+|+.++-.. .+|+.... |-..... .
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~-------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIA-------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcch-------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcc
Confidence 35799999999999999766532 1589999999999999999999986642 23332221 1111111 1
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhCC----CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKCP----NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~~----~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
++.++=+ ....|-++-..+.+.+..+| +-|.+|||++.++...++.||+-+|+. +.+++|||+
T Consensus 89 DviEiDa--ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-----------P~hV~FIlA 155 (515)
T COG2812 89 DVIEIDA--ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-----------PSHVKFILA 155 (515)
T ss_pred cchhhhh--hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-----------ccCeEEEEe
Confidence 2222211 11233333344455555554 679999999999999999999999963 578999999
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
|.-. ... ++-.++|. ....|..++.++
T Consensus 156 TTe~---------------------------------------------------~Ki-p~TIlSRc-q~f~fkri~~~~ 182 (515)
T COG2812 156 TTEP---------------------------------------------------QKI-PNTILSRC-QRFDFKRLDLEE 182 (515)
T ss_pred cCCc---------------------------------------------------CcC-chhhhhcc-ccccccCCCHHH
Confidence 8811 011 26677888 457889999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
+..-+...+. .-.+.++++++.+|++ ...++.|.--+.+++.+.
T Consensus 183 I~~~L~~i~~----------~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~ 226 (515)
T COG2812 183 IAKHLAAILD----------KEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIA 226 (515)
T ss_pred HHHHHHHHHH----------hcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHH
Confidence 7776655553 1256788999999874 235666666555555443
No 221
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=2.1e-08 Score=109.73 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=119.6
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++||+.++..+...+..... +-.++|+||+|+|||.+|+.+++.++.........-.|.. ...+..+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl-------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~---C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI-------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK---CELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC-------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc---cHHHHHHh
Confidence 4689999999999888875431 2268999999999999999999998653111100001110 01111111
Q ss_pred -cCCCCC--------ccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 348 -GAPPGY--------LGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 348 -g~~~g~--------~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
|..+.+ .+.+.-..+.+.+.. +.+.|++|||+|+++.+.++.||+.+|+- ..+++|
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-----------p~~tvf 154 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-----------PPRVVF 154 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-----------CcCeEE
Confidence 111110 111111112222222 23579999999999999999999999952 246778
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|++|+- ... +. |.+.+|. ..+.|.+++
T Consensus 155 IL~t~~-~~~--------------------------------------------------ll-pTIrSRc-~~~~f~~l~ 181 (620)
T PRK14948 155 VLATTD-PQR--------------------------------------------------VL-PTIISRC-QRFDFRRIP 181 (620)
T ss_pred EEEeCC-hhh--------------------------------------------------hh-HHHHhhe-eEEEecCCC
Confidence 888762 111 11 6677787 567888998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 495 KSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 495 ~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
.+++...+.....+ . .+.++++++..|++ + ..++.|...+.+++
T Consensus 182 ~~ei~~~L~~ia~k--------e--gi~is~~al~~La~-~-s~G~lr~A~~lLek 225 (620)
T PRK14948 182 LEAMVQHLSEIAEK--------E--SIEIEPEALTLVAQ-R-SQGGLRDAESLLDQ 225 (620)
T ss_pred HHHHHHHHHHHHHH--------h--CCCCCHHHHHHHHH-H-cCCCHHHHHHHHHH
Confidence 88877665443321 1 24478888888874 2 23556666666664
No 222
>PRK04195 replication factor C large subunit; Provisional
Probab=98.93 E-value=1.5e-08 Score=108.93 Aligned_cols=185 Identities=22% Similarity=0.272 Sum_probs=121.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++.+++.+...+..+..+.. +-.++|+||+|+|||.+++.+++.+.. .++.++.+.......+..+++
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~----~~~lLL~GppG~GKTtla~ala~el~~----~~ielnasd~r~~~~i~~~i~ 86 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKP----KKALLLYGPPGVGKTSLAHALANDYGW----EVIELNASDQRTADVIERVAG 86 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCC----CCeEEEECCCCCCHHHHHHHHHHHcCC----CEEEEcccccccHHHHHHHHH
Confidence 588999999999988877664321 448999999999999999999998743 377777776654444555543
Q ss_pred CCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH----HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHH
Q psy1308 349 APPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP----DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~----~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~ 424 (607)
....+ ..+. ..+..+|+|||+|.++. ..+..|+.+++.. +..||+++|....
T Consensus 87 ~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-------------~~~iIli~n~~~~- 142 (482)
T PRK04195 87 EAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKKA-------------KQPIILTANDPYD- 142 (482)
T ss_pred Hhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHcC-------------CCCEEEeccCccc-
Confidence 21111 0111 13467999999999876 5678888888732 2346777772110
Q ss_pred HHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCCh-hhhccccceeeeccCCHHHHHHHHH
Q psy1308 425 IAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRD-EFLGRINEIVYFLPFSKSELHTLVC 503 (607)
Q Consensus 425 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~-el~~ri~~iv~f~pl~~~~~~~i~~ 503 (607)
.. + .+.+|. ..+.|.|++.+++..++.
T Consensus 143 --------------------------------------------------~~-~k~Lrsr~-~~I~f~~~~~~~i~~~L~ 170 (482)
T PRK04195 143 --------------------------------------------------PS-LRELRNAC-LMIEFKRLSTRSIVPVLK 170 (482)
T ss_pred --------------------------------------------------cc-hhhHhccc-eEEEecCCCHHHHHHHHH
Confidence 00 2 333444 578999999998888876
Q ss_pred HHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHH
Q psy1308 504 RELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVE 549 (607)
Q Consensus 504 ~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~ 549 (607)
..+.. .+ +.+++++++.|++. ..+..|.+-+.++
T Consensus 171 ~i~~~--------eg--i~i~~eaL~~Ia~~--s~GDlR~ain~Lq 204 (482)
T PRK04195 171 RICRK--------EG--IECDDEALKEIAER--SGGDLRSAINDLQ 204 (482)
T ss_pred HHHHH--------cC--CCCCHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 55531 13 35789999999862 1344444444443
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.93 E-value=1e-08 Score=99.32 Aligned_cols=163 Identities=11% Similarity=0.153 Sum_probs=103.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
+++++||+|+|||.+++.++...... ......+.+..... ... .+.+.++. ..+|+|||
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~--~~~----------------~~~~~~~~--~dlliiDd 105 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW--FVP----------------EVLEGMEQ--LSLVCIDN 105 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh--hhH----------------HHHHHhhh--CCEEEEeC
Confidence 68999999999999999999876543 11122222211100 000 11222222 25899999
Q ss_pred CCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcch
Q psy1308 379 VDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDV 456 (607)
Q Consensus 379 iek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (607)
|+.+. +..+..|..++.... + ..+..+|+||+.....+..
T Consensus 106 i~~~~~~~~~~~~lf~l~n~~~--e-------~g~~~li~ts~~~p~~l~~----------------------------- 147 (235)
T PRK08084 106 IECIAGDELWEMAIFDLYNRIL--E-------SGRTRLLITGDRPPRQLNL----------------------------- 147 (235)
T ss_pred hhhhcCCHHHHHHHHHHHHHHH--H-------cCCCeEEEeCCCChHHcCc-----------------------------
Confidence 99875 445555655554211 0 1123478888855444311
Q ss_pred hcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHcc
Q psy1308 457 TISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADG 534 (607)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~ 534 (607)
+. |+|.+|+. .++.+.|++.+++.++++.... .+ + +.++++++++|++
T Consensus 148 ------------------~~-~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~-------~~-~--~~l~~~v~~~L~~- 197 (235)
T PRK08084 148 ------------------GL-PDLASRLDWGQIYKLQPLSDEEKLQALQLRAR-------LR-G--FELPEDVGRFLLK- 197 (235)
T ss_pred ------------------cc-HHHHHHHhCCceeeecCCCHHHHHHHHHHHHH-------Hc-C--CCCCHHHHHHHHH-
Confidence 12 88999995 6788899999999998754332 11 3 6799999999985
Q ss_pred CCCCCCccchhHHHHHH
Q psy1308 535 YDVHYGARSIKHEVERQ 551 (607)
Q Consensus 535 ~~~~~GaR~L~~~i~~~ 551 (607)
..+..+|.+.+.+++.
T Consensus 198 -~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 198 -RLDREMRTLFMTLDQL 213 (235)
T ss_pred -hhcCCHHHHHHHHHHH
Confidence 3467789999999874
No 224
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.93 E-value=1.5e-08 Score=110.13 Aligned_cols=213 Identities=14% Similarity=0.169 Sum_probs=132.9
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeeccccccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEK 340 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~ 340 (607)
..+.+.+.-++.+...+.....+.. |- .+++.|+||+|||.+++.+.+.+.... .-.++.++|..+...
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsg----pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSG----SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCC----CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 4688999999999888877654422 33 467999999999999999988763211 123567788665544
Q ss_pred chh-----HhhhcCCCCCccCCCCchhhHHHhhC-----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 341 HEV-----AKLIGAPPGYLGHDDGGQLTKRLKKC-----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 341 ~~~-----~~llg~~~g~~g~~~~~~l~~~~~~~-----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
..+ ..|++..|. .|......+..++... ...||+|||||.+....++.|+.+++-... . -.
T Consensus 831 ~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~--s------~S 901 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK--I------NS 901 (1164)
T ss_pred HHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--c------CC
Confidence 432 123343321 1211111222222221 245899999999988778889988873221 1 13
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccc-ceee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRIN-EIVY 489 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~-~iv~ 489 (607)
.++||++||-- + + ...+. |.+.+|+. ..+.
T Consensus 902 KLiLIGISNdl-D-L----------------------------------------------perLd-PRLRSRLg~eeIv 932 (1164)
T PTZ00112 902 KLVLIAISNTM-D-L----------------------------------------------PERLI-PRCRSRLAFGRLV 932 (1164)
T ss_pred eEEEEEecCch-h-c----------------------------------------------chhhh-hhhhhcccccccc
Confidence 57789999811 0 0 00011 44555553 3478
Q ss_pred eccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHH
Q psy1308 490 FLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 490 f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i 552 (607)
|.|++.+++.+|+...+... .-.++++|++++++ .....+.||..-..+++.+
T Consensus 933 F~PYTaEQL~dILk~RAe~A----------~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 933 FSPYKGDEIEKIIKERLENC----------KEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 99999999999988777531 12489999999985 3444577775555554433
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.92 E-value=5.7e-08 Score=97.48 Aligned_cols=209 Identities=20% Similarity=0.221 Sum_probs=128.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhcc---CcCCceEEeec----cccccc-
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR---DKKEAFIRLDM----SEYQEK- 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~---~~~~~~~~l~~----a~~~~~- 340 (607)
.++|++++++.+...++....+... +...++|+||+|+|||++++.|++.+.. .++.++..+.. +...++
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~--~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~P 129 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEE--RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDP 129 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCC--CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCC
Confidence 6999999999999998887765432 2346899999999999999999998754 22344544433 221111
Q ss_pred -----------------------------------------------------------------------chhHhhhcC
Q psy1308 341 -----------------------------------------------------------------------HEVAKLIGA 349 (607)
Q Consensus 341 -----------------------------------------------------------------------~~~~~llg~ 349 (607)
..++.|+|.
T Consensus 130 l~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G~ 209 (361)
T smart00763 130 LHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTGK 209 (361)
T ss_pred cccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhcc
Confidence 011111111
Q ss_pred C-----CCCccCCCCc--hhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcch
Q psy1308 350 P-----PGYLGHDDGG--QLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLAS 422 (607)
Q Consensus 350 ~-----~g~~g~~~~~--~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~ 422 (607)
. ..| +..+.. ...+.+.++++|++-|+|+.|++.+++..||.++++|.+...++.....-+.+||++||-.
T Consensus 210 vd~~k~~~~-~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~- 287 (361)
T smart00763 210 VDIRKLEIY-SESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNES- 287 (361)
T ss_pred cCHHHhccc-CCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHH-
Confidence 0 000 000000 0123455677899999999999999999999999999998654332333556899999921
Q ss_pred HHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHH
Q psy1308 423 NEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLV 502 (607)
Q Consensus 423 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~ 502 (607)
+.... + .... ...|..|+..+-+--|++.++=.+|.
T Consensus 288 -e~~~~----------------------------------~--------~~k~-~eaf~dR~~~i~vpY~l~~~~E~~Iy 323 (361)
T smart00763 288 -EWQRF----------------------------------K--------SNKK-NEALLDRIIKVKVPYCLRVSEEAQIY 323 (361)
T ss_pred -HHhhh----------------------------------h--------cccc-chhhhhceEEEeCCCcCCHHHHHHHH
Confidence 11000 0 0001 16788899744444456777777787
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 503 CRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 503 ~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
+..+..- ......+.|.+++.++
T Consensus 324 ~k~~~~s-------~~~~~~~aP~~le~aa 346 (361)
T smart00763 324 EKLLRNS-------DLTEAHIAPHTLEMAA 346 (361)
T ss_pred HHHhccC-------cCcccccCchHHHHHH
Confidence 7776521 0124556677666654
No 226
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.92 E-value=1.2e-08 Score=107.80 Aligned_cols=165 Identities=22% Similarity=0.307 Sum_probs=99.3
Q ss_pred HhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc----CCceEEeeccc
Q psy1308 269 RIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK----KEAFIRLDMSE 336 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~----~~~~~~l~~a~ 336 (607)
.+.|.+..++.+...+... ..+.. .|..++|+||||+|||.++++++..+.... ......+++..
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 4677888888887776432 11222 244799999999999999999999875421 01111122111
Q ss_pred ccccchhHhhhcCCCCCccCCCC--chhhHHHhh----CCCeEEEEecCCccCH------------HHHHHHHHhhccce
Q psy1308 337 YQEKHEVAKLIGAPPGYLGHDDG--GQLTKRLKK----CPNAVVLFDEVDKAHP------------DVLTVLLQLFDEGR 398 (607)
Q Consensus 337 ~~~~~~~~~llg~~~g~~g~~~~--~~l~~~~~~----~~~~vl~lDEiek~~~------------~~~~~Ll~~~~~~~ 398 (607)
..++. .|.|.... ..+....+. ...++|||||+|.+-. .+.+.||..++.-
T Consensus 260 -------~eLl~---kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl- 328 (512)
T TIGR03689 260 -------PELLN---KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV- 328 (512)
T ss_pred -------hhhcc---cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc-
Confidence 11111 12221111 112222222 2468999999997621 2345677766531
Q ss_pred eecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCCh
Q psy1308 399 LTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRD 478 (607)
Q Consensus 399 ~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~ 478 (607)
....++++|+|||... . + .|
T Consensus 329 --------~~~~~ViVI~ATN~~d-------------------------------------------~--------L-Dp 348 (512)
T TIGR03689 329 --------ESLDNVIVIGASNRED-------------------------------------------M--------I-DP 348 (512)
T ss_pred --------ccCCceEEEeccCChh-------------------------------------------h--------C-CH
Confidence 1225788999999310 0 1 15
Q ss_pred hhhc--cccceeeeccCCHHHHHHHHHHHHH
Q psy1308 479 EFLG--RINEIVYFLPFSKSELHTLVCRELN 507 (607)
Q Consensus 479 el~~--ri~~iv~f~pl~~~~~~~i~~~~l~ 507 (607)
.++. |||..|.|.+++.++..+|+...+.
T Consensus 349 ALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 349 AILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred hhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 5654 9999999999999999999988775
No 227
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.92 E-value=2.8e-09 Score=98.30 Aligned_cols=130 Identities=25% Similarity=0.316 Sum_probs=83.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC----------------------
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK---------------------- 326 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~---------------------- 326 (607)
.++||+.++..+.-+..-. -.+++.||+|+|||.+|+.+...+..-..
T Consensus 4 dI~GQe~aKrAL~iAAaG~----------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~ 73 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAGG----------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLI 73 (206)
T ss_dssp CSSSTHHHHHHHHHHHHCC------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEE
T ss_pred hhcCcHHHHHHHHHHHcCC----------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCcee
Confidence 4789999988876555421 16999999999999999999988643110
Q ss_pred --CceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeec--C
Q psy1308 327 --EAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD--G 402 (607)
Q Consensus 327 --~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~--~ 402 (607)
.||...+- ......++|.. .....+.+..+++||||+||+-..++.+++.|++.+++|+++- .
T Consensus 74 ~~~Pfr~phh-----s~s~~~liGgg--------~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~ 140 (206)
T PF01078_consen 74 RQRPFRAPHH-----SASEAALIGGG--------RPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRA 140 (206)
T ss_dssp E---EEEE-T-----T--HHHHHEEG--------GGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEET
T ss_pred cCCCcccCCC-----CcCHHHHhCCC--------cCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEEC
Confidence 11111111 11233455421 0123456788999999999999999999999999999998764 3
Q ss_pred CCcEEecCceEEEEecCcc
Q psy1308 403 KGKTIECKDAIFVMTSNLA 421 (607)
Q Consensus 403 ~g~~~~~~~~~iI~tsn~~ 421 (607)
++......+.++|+|.|--
T Consensus 141 ~~~~~~Pa~f~lv~a~NPc 159 (206)
T PF01078_consen 141 GGSVTYPARFLLVAAMNPC 159 (206)
T ss_dssp TEEEEEB--EEEEEEE-S-
T ss_pred CceEEEecccEEEEEeccc
Confidence 4444556888999998843
No 228
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=2.5e-08 Score=109.34 Aligned_cols=195 Identities=19% Similarity=0.263 Sum_probs=118.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCc-eEEeecccccccchhHhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEA-FIRLDMSEYQEKHEVAKL 346 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~-~~~l~~a~~~~~~~~~~l 346 (607)
..++||+.+++.+...+..... +-.++|+||+|+|||.+++.+++.+......+ ..+ |.. ...+..+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i-------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~--c~~---c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRV-------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP--CGT---CEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC-------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--Ccc---CHHHHHH
Confidence 4689999999998888765431 22579999999999999999999986421100 000 100 0011111
Q ss_pred h-cCCC--------CCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 347 I-GAPP--------GYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 347 l-g~~~--------g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
. |..+ ...+.++-..+.+.+.. +.+.|++|||+++++.+.++.|++.+++.. .+++
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-----------~~tv 152 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-----------PHAI 152 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-----------CCeE
Confidence 1 0001 11111111122222222 346799999999999999999999998632 3567
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccC
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl 493 (607)
||++++-- .. +. +.+.+|. ..+.|.++
T Consensus 153 ~Il~t~~~-~k--------------------------------------------------ll-~tI~SR~-~~i~f~~l 179 (585)
T PRK14950 153 FILATTEV-HK--------------------------------------------------VP-ATILSRC-QRFDFHRH 179 (585)
T ss_pred EEEEeCCh-hh--------------------------------------------------hh-HHHHhcc-ceeeCCCC
Confidence 78776510 00 11 3455565 45789999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 494 ~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
+.+++..++...+.. .| +.++++++.+|+. + ..++.|.+.+.+++
T Consensus 180 ~~~el~~~L~~~a~~--------eg--l~i~~eal~~La~-~-s~Gdlr~al~~Lek 224 (585)
T PRK14950 180 SVADMAAHLRKIAAA--------EG--INLEPGALEAIAR-A-ATGSMRDAENLLQQ 224 (585)
T ss_pred CHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHH
Confidence 999888876555431 12 4478888888874 1 12456766666665
No 229
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.4e-09 Score=112.65 Aligned_cols=178 Identities=22% Similarity=0.283 Sum_probs=112.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
|..+||+||+|+|||.+|++++..+ ..+|+.++.+.+. .+++|.....+ ..+....++...+||||
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~----~~~fi~v~~~~l~-----sk~vGesek~i-----r~~F~~A~~~~p~iiFi 341 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALES----RSRFISVKGSELL-----SKWVGESEKNI-----RELFEKARKLAPSIIFI 341 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhC----CCeEEEeeCHHHh-----ccccchHHHHH-----HHHHHHHHcCCCcEEEE
Confidence 4489999999999999999999866 4459999987653 33444222111 13344455566899999
Q ss_pred ecCCccC-----------HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCC
Q psy1308 377 DEVDKAH-----------PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPS 445 (607)
Q Consensus 377 DEiek~~-----------~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~ 445 (607)
||+|++- ..+++.|+..++.-. ..+++++|.+||....
T Consensus 342 DEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~p~~---------------------- 390 (494)
T COG0464 342 DEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNRPDD---------------------- 390 (494)
T ss_pred EchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCCccc----------------------
Confidence 9999862 247777777775221 2356788999993211
Q ss_pred cccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEe
Q psy1308 446 ISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVW 523 (607)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~ 523 (607)
. .|.++. |||.++.+.|.+.++..+|+...+..... . -.
T Consensus 391 -----------------------------l-d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~--------~-~~ 431 (494)
T COG0464 391 -----------------------------L-DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP--------P-LA 431 (494)
T ss_pred -----------------------------c-CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC--------c-ch
Confidence 1 144444 99999999999999999998887763111 0 01
Q ss_pred CHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHH
Q psy1308 524 DIDVETILADGYDVHYGARSIKHEVERQVVSQLAAA 559 (607)
Q Consensus 524 ~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~ 559 (607)
++-.++.|++ -...+-...+...++.....++.+.
T Consensus 432 ~~~~~~~l~~-~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 432 EDVDLEELAE-ITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred hhhhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 1222333432 1111333447777777666666544
No 230
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.90 E-value=1.1e-08 Score=101.53 Aligned_cols=111 Identities=25% Similarity=0.400 Sum_probs=80.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCC-----CC--ccCCCCchhhHHHhhCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP-----GY--LGHDDGGQLTKRLKKCPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~-----g~--~g~~~~~~l~~~~~~~~~ 371 (607)
++++.|++|+|||.+++.+++.+.. +++++++..... ...++|... |. ..+ ..|.+..+. ..+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~----~~~rV~~~~~l~---~~DliG~~~~~l~~g~~~~~f-~~GpL~~A~--~~g 135 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW----PCVRVNLDSHVS---RIDLVGKDAIVLKDGKQITEF-RDGILPWAL--QHN 135 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC----CeEEEEecCCCC---hhhcCCCceeeccCCcceeEE-ecCcchhHH--hCC
Confidence 5899999999999999999999854 588998876533 345666421 10 111 112333332 245
Q ss_pred eEEEEecCCccCHHHHHHHHHhhc-cceeec-CCCcEEecC-ceEEEEecC
Q psy1308 372 AVVLFDEVDKAHPDVLTVLLQLFD-EGRLTD-GKGKTIECK-DAIFVMTSN 419 (607)
Q Consensus 372 ~vl~lDEiek~~~~~~~~Ll~~~~-~~~~~~-~~g~~~~~~-~~~iI~tsn 419 (607)
.+++||||+.++|+++..|..++| ++.++. ..+..+... +.++|+|+|
T Consensus 136 ~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~N 186 (327)
T TIGR01650 136 VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATAN 186 (327)
T ss_pred eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeC
Confidence 789999999999999999999999 456665 356667565 788999999
No 231
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.90 E-value=2.5e-08 Score=107.75 Aligned_cols=164 Identities=20% Similarity=0.250 Sum_probs=98.4
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC--C--CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 269 RIVGQESAINIISAAIKRKENG--W--TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~--~--~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.+.|++.+.+.+...+...... + .....|..++|+||+|||||.+++.++.... -+|+.++.+.+. .
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~----~~~~~i~~~~~~-----~ 126 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG----VPFFSISGSDFV-----E 126 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC----CCeeeccHHHHH-----H
Confidence 4667777666665544321110 0 0122345799999999999999999998763 357777765542 1
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH--------------HHHHHHHHhhccceeecCCCcEEecC
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP--------------DVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~--------------~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
.+.|... ..-..+....+....+||||||||.+.+ .+++.|+..++.- . ...
T Consensus 127 ~~~g~~~-----~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--~-------~~~ 192 (495)
T TIGR01241 127 MFVGVGA-----SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--G-------TNT 192 (495)
T ss_pred HHhcccH-----HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--c-------CCC
Confidence 2222100 0011233334445568999999988643 2344555555421 1 123
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--cccccee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEIV 488 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~iv 488 (607)
+++||+|||... . +. |.++ +|||..+
T Consensus 193 ~v~vI~aTn~~~-~------------------------------------------ld---------~al~r~gRfd~~i 220 (495)
T TIGR01241 193 GVIVIAATNRPD-V------------------------------------------LD---------PALLRPGRFDRQV 220 (495)
T ss_pred CeEEEEecCChh-h------------------------------------------cC---------HHHhcCCcceEEE
Confidence 578999998321 1 11 3333 4899989
Q ss_pred eeccCCHHHHHHHHHHHHH
Q psy1308 489 YFLPFSKSELHTLVCRELN 507 (607)
Q Consensus 489 ~f~pl~~~~~~~i~~~~l~ 507 (607)
.+.+++.++..+|++..+.
T Consensus 221 ~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 221 VVDLPDIKGREEILKVHAK 239 (495)
T ss_pred EcCCCCHHHHHHHHHHHHh
Confidence 9988899999999887664
No 232
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.88 E-value=3.2e-08 Score=111.67 Aligned_cols=179 Identities=20% Similarity=0.266 Sum_probs=116.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..++.+...+.+.. +..++|+||||+|||.+++.++..+...+ ...+..++++.....
T Consensus 183 ~~igr~~ei~~~~~~L~~~~--------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~-- 252 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK--------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG-- 252 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC--------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh--
Confidence 47899999998877765442 22578999999999999999998873321 223555555433210
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHh---hCCCeEEEEecCCccC---------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLK---KCPNAVVLFDEVDKAH---------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEiek~~---------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
..|.|. -...+...+. .....|||||||+.+. .++++.|...++.|
T Consensus 253 --------~~~~g~-~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g------------- 310 (731)
T TIGR02639 253 --------TKYRGD-FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG------------- 310 (731)
T ss_pred --------ccccch-HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-------------
Confidence 112221 1123333343 3457899999999763 45788888888754
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
++.+|.+||. .+...+. . . .+.|.+||. .+.+
T Consensus 311 ~i~~IgaTt~--~e~~~~~---------------------------------~-----------~-d~al~rRf~-~i~v 342 (731)
T TIGR02639 311 KLRCIGSTTY--EEYKNHF---------------------------------E-----------K-DRALSRRFQ-KIDV 342 (731)
T ss_pred CeEEEEecCH--HHHHHHh---------------------------------h-----------h-hHHHHHhCc-eEEe
Confidence 3568888882 1111110 0 0 277888896 6788
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.+++.++..+|++.....+.. .+ .+.++++++..++.
T Consensus 343 ~~p~~~~~~~il~~~~~~~e~----~~--~v~i~~~al~~~~~ 379 (731)
T TIGR02639 343 GEPSIEETVKILKGLKEKYEE----FH--HVKYSDEALEAAVE 379 (731)
T ss_pred CCCCHHHHHHHHHHHHHHHHh----cc--CcccCHHHHHHHHH
Confidence 889999999998877665332 12 46789999998874
No 233
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.87 E-value=8.5e-09 Score=90.46 Aligned_cols=96 Identities=35% Similarity=0.502 Sum_probs=67.2
Q ss_pred eeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch--hHhhhcCCCCCccCCCCchhhHHHhhCC-CeEEEE
Q psy1308 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE--VAKLIGAPPGYLGHDDGGQLTKRLKKCP-NAVVLF 376 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~--~~~llg~~~g~~g~~~~~~l~~~~~~~~-~~vl~l 376 (607)
++++||+|+|||.+++.+++.+. .++..+++........ ....+ ..+........ .++++|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~~~~~~~~~~~i------------~~~~~~~~~~~~~~vl~i 64 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELISSYAGDSEQKI------------RDFFKKAKKSAKPCVLFI 64 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHHTSSTTHHHHHH------------HHHHHHHHHTSTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----ccccccccccccccccccccccc------------ccccccccccccceeeee
Confidence 57999999999999999999984 4588888877652210 00000 11223333344 699999
Q ss_pred ecCCccCHHH-----------HHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 377 DEVDKAHPDV-----------LTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 377 DEiek~~~~~-----------~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
||+|.+.+.. ++.|+..+++..-. .++++||+|||
T Consensus 65 De~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn 110 (132)
T PF00004_consen 65 DEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTN 110 (132)
T ss_dssp ETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEES
T ss_pred ccchhcccccccccccccccccceeeecccccccc--------cccceeEEeeC
Confidence 9999998775 88888888854311 25689999999
No 234
>PRK08727 hypothetical protein; Validated
Probab=98.86 E-value=5.7e-08 Score=93.98 Aligned_cols=163 Identities=12% Similarity=0.136 Sum_probs=104.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
+++++|++|+|||.++++++..+... ......+.+...... .. .....+. ...+|+|||
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~~~~~~~~--~~----------------~~~~~l~--~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLPLQAAAGR--LR----------------DALEALE--GRSLVALDG 101 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEeHHHhhhh--HH----------------HHHHHHh--cCCEEEEeC
Confidence 58999999999999999998876554 222223333221110 00 1111222 235999999
Q ss_pred CCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcch
Q psy1308 379 VDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDV 456 (607)
Q Consensus 379 iek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (607)
++.+. +..+..|+.++.... . ...-+|+||+.....+..
T Consensus 102 i~~l~~~~~~~~~lf~l~n~~~--~--------~~~~vI~ts~~~p~~l~~----------------------------- 142 (233)
T PRK08727 102 LESIAGQREDEVALFDFHNRAR--A--------AGITLLYTARQMPDGLAL----------------------------- 142 (233)
T ss_pred cccccCChHHHHHHHHHHHHHH--H--------cCCeEEEECCCChhhhhh-----------------------------
Confidence 99885 556667777775321 1 123488999965554421
Q ss_pred hcchhhhhhhhhHHHHhccCChhhhccc--cceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHcc
Q psy1308 457 TISRHFKDHVVQPILKRHFRRDEFLGRI--NEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADG 534 (607)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~f~~~el~~ri--~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~ 534 (607)
+. |++.+|+ ..++.+.|++.+++.+|++..... + .+.++++++++|++.
T Consensus 143 ------------------~~-~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~-------~---~l~l~~e~~~~La~~ 193 (233)
T PRK08727 143 ------------------VL-PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR-------R---GLALDEAAIDWLLTH 193 (233)
T ss_pred ------------------hh-HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHHh
Confidence 11 7888886 457899999999999998764432 1 367999999999862
Q ss_pred CCCCCCccchhHHHHHHH
Q psy1308 535 YDVHYGARSIKHEVERQV 552 (607)
Q Consensus 535 ~~~~~GaR~L~~~i~~~i 552 (607)
. ++-+|.+-+.+++..
T Consensus 194 ~--~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 194 G--ERELAGLVALLDRLD 209 (233)
T ss_pred C--CCCHHHHHHHHHHHH
Confidence 2 255666666676543
No 235
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.86 E-value=1.9e-08 Score=108.59 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=92.1
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhCC----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEe---e
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKENG----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRL---D 333 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l---~ 333 (607)
.|...+...+.|++.....+.-.+...... ...-....++|+.|++|+|||.+++.+++...+. .|+.. +
T Consensus 196 ~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~---~~~~~~~~~ 272 (509)
T smart00350 196 RLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA---VYTTGKGSS 272 (509)
T ss_pred HHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc---eEcCCCCCC
Confidence 355566677899998766555444322110 1111234589999999999999999999987542 24431 2
Q ss_pred cccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecC-CCcEE-ecCc
Q psy1308 334 MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDG-KGKTI-ECKD 411 (607)
Q Consensus 334 ~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~-~g~~~-~~~~ 411 (607)
++.+.. ..+..+ ..| .-....+.+..+.+|++++||++++++..|..|+++|+++.++-. .|.+. -..+
T Consensus 273 ~~~l~~-----~~~~~~--~~g--~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~ 343 (509)
T smart00350 273 AVGLTA-----AVTRDP--ETR--EFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNAR 343 (509)
T ss_pred cCCccc-----cceEcc--Ccc--eEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCC
Confidence 211211 000000 001 000112345567889999999999999999999999999987643 34333 3367
Q ss_pred eEEEEecC
Q psy1308 412 AIFVMTSN 419 (607)
Q Consensus 412 ~~iI~tsn 419 (607)
+.+|+|+|
T Consensus 344 ~~viAa~N 351 (509)
T smart00350 344 CSVLAAAN 351 (509)
T ss_pred cEEEEEeC
Confidence 89999999
No 236
>PRK06893 DNA replication initiation factor; Validated
Probab=98.86 E-value=1.8e-08 Score=97.30 Aligned_cols=163 Identities=13% Similarity=0.214 Sum_probs=105.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.++++||+|+|||.|+++++..+... ......+.++..... .. .+...+ ....+|+|||
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~~~--~~----------------~~~~~~--~~~dlLilDD 99 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQYF--SP----------------AVLENL--EQQDLVCLDD 99 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhhhh--hH----------------HHHhhc--ccCCEEEEeC
Confidence 57899999999999999999886543 222233333211000 00 111111 1346999999
Q ss_pred CCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcch
Q psy1308 379 VDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDV 456 (607)
Q Consensus 379 iek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (607)
|+... ++.+..|+.+++... .. .+.++|+|++.....+..
T Consensus 100 i~~~~~~~~~~~~l~~l~n~~~--~~-------~~~illits~~~p~~l~~----------------------------- 141 (229)
T PRK06893 100 LQAVIGNEEWELAIFDLFNRIK--EQ-------GKTLLLISADCSPHALSI----------------------------- 141 (229)
T ss_pred hhhhcCChHHHHHHHHHHHHHH--Hc-------CCcEEEEeCCCChHHccc-----------------------------
Confidence 99864 455667888776321 11 234577888865554310
Q ss_pred hcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHcc
Q psy1308 457 TISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADG 534 (607)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~ 534 (607)
.. |++.+|+. .++.+.|++.++..+|++..... + .+.++++++++|+..
T Consensus 142 ------------------~~-~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~-------~---~l~l~~~v~~~L~~~ 192 (229)
T PRK06893 142 ------------------KL-PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ-------R---GIELSDEVANFLLKR 192 (229)
T ss_pred ------------------cc-hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHHh
Confidence 11 66777764 47788999999999997765531 1 378899999999852
Q ss_pred CCCCCCccchhHHHHHH
Q psy1308 535 YDVHYGARSIKHEVERQ 551 (607)
Q Consensus 535 ~~~~~GaR~L~~~i~~~ 551 (607)
.+..+|.|...+++.
T Consensus 193 --~~~d~r~l~~~l~~l 207 (229)
T PRK06893 193 --LDRDMHTLFDALDLL 207 (229)
T ss_pred --ccCCHHHHHHHHHHH
Confidence 346789999999874
No 237
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.85 E-value=7.1e-08 Score=101.69 Aligned_cols=212 Identities=20% Similarity=0.255 Sum_probs=123.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchh-Hh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEV-AK 345 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~-~~ 345 (607)
..++|.+..++.+...+.....+ .+|..++++||+|+|||.+++.+.+.+.... .-.++.++|........+ ..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~----~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG----SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 36888999999998888765432 2345688999999999999999998875432 345777888765543222 12
Q ss_pred ----hhcCCCCCccCCCC---chhhHHHhh-CCCeEEEEecCCccC----HHHHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 346 ----LIGAPPGYLGHDDG---GQLTKRLKK-CPNAVVLFDEVDKAH----PDVLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 346 ----llg~~~g~~g~~~~---~~l~~~~~~-~~~~vl~lDEiek~~----~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
+.+......|.... ..+...+.. ....+|+|||++.+. .+.+..|+..++.. . -.++.
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-----~-----~~~v~ 175 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-----P-----GARIG 175 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-----C-----CCeEE
Confidence 22211111221111 112222222 235789999999885 45555666555421 1 12567
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccc-cceeeecc
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRI-NEIVYFLP 492 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri-~~iv~f~p 492 (607)
+|+++|..... ..+. |...+|+ ...+.|.|
T Consensus 176 vI~i~~~~~~~------------------------------------------------~~l~-~~~~s~~~~~~i~f~p 206 (394)
T PRK00411 176 VIGISSDLTFL------------------------------------------------YILD-PRVKSVFRPEEIYFPP 206 (394)
T ss_pred EEEEECCcchh------------------------------------------------hhcC-HHHHhcCCcceeecCC
Confidence 88888721100 0011 3333344 24679999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHH
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVER 550 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~ 550 (607)
++.+++.+|+...+.. -+. .-.+++++++.+++ .....+.+|..-+.+.+
T Consensus 207 y~~~e~~~il~~r~~~---~~~-----~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 207 YTADEIFDILKDRVEE---GFY-----PGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred CCHHHHHHHHHHHHHh---hcc-----cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999998776632 110 12478889888865 11124455544444443
No 238
>PF13606 Ank_3: Ankyrin repeat
Probab=98.85 E-value=3.7e-09 Score=65.82 Aligned_cols=30 Identities=53% Similarity=0.743 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy1308 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNL 148 (607)
Q Consensus 119 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~ 148 (607)
+|+||||+||+.|+.++|++|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 478888888888888888888888888873
No 239
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.85 E-value=7.6e-08 Score=99.20 Aligned_cols=142 Identities=20% Similarity=0.350 Sum_probs=97.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh-
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI- 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll- 347 (607)
.+++.+..++.+...+... -.+++.||+|+|||.+|+.++..+.. ...+.++++-+++.......++
T Consensus 176 d~~i~e~~le~l~~~L~~~----------~~iil~GppGtGKT~lA~~la~~l~~--~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK----------KNIILQGPPGVGKTFVARRLAYLLTG--EKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred cccCCHHHHHHHHHHHhcC----------CCEEEECCCCCCHHHHHHHHHHHhcC--CcccceeeEEeecccccHHHHhc
Confidence 3555666666665555422 25888999999999999999998864 2345677777777777788877
Q ss_pred cCCCCCccCCCC-chhhHHHhhC-----CCeEEEEecCCccCHH-HHHHHHHhhccce------ee----cCC-CcEEec
Q psy1308 348 GAPPGYLGHDDG-GQLTKRLKKC-----PNAVVLFDEVDKAHPD-VLTVLLQLFDEGR------LT----DGK-GKTIEC 409 (607)
Q Consensus 348 g~~~g~~g~~~~-~~l~~~~~~~-----~~~vl~lDEiek~~~~-~~~~Ll~~~~~~~------~~----~~~-g~~~~~ 409 (607)
|..|+++|+... |.+..++..+ .+.+++||||++++++ +...|+++++... +. ... ..-...
T Consensus 244 G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 244 GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred ccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 666777776544 3343333332 3689999999999976 5788999998542 11 111 122345
Q ss_pred CceEEEEecCcch
Q psy1308 410 KDAIFVMTSNLAS 422 (607)
Q Consensus 410 ~~~~iI~tsn~~~ 422 (607)
.|++||.|.|...
T Consensus 324 ~Nl~IIgTMNt~D 336 (459)
T PRK11331 324 ENVYIIGLMNTAD 336 (459)
T ss_pred CCeEEEEecCccc
Confidence 8999999999543
No 240
>KOG0991|consensus
Probab=98.84 E-value=1e-08 Score=93.94 Aligned_cols=126 Identities=24% Similarity=0.289 Sum_probs=89.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKL 346 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~l 346 (607)
..++|.++.++.+....+.... .++++.||||+|||..+..+|+.+.++. +++...++.|.-.+-.-+..-
T Consensus 27 ~dIVGNe~tv~rl~via~~gnm--------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~ 98 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNM--------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNK 98 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCC--------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHH
Confidence 4689999999988766654431 2688999999999999999999876642 667777777766554333222
Q ss_pred hcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcc
Q psy1308 347 IGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLA 421 (607)
Q Consensus 347 lg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~ 421 (607)
+-... +-.-.+....+-+++|||+|.+....|.+|.+.|| +..+.++|.+++|..
T Consensus 99 IK~FA---------Q~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME-----------iyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 99 IKMFA---------QKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME-----------IYSNTTRFALACNQS 153 (333)
T ss_pred HHHHH---------HhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH-----------HHcccchhhhhhcch
Confidence 11000 00000112345799999999999999999999998 555778999999943
No 241
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.84 E-value=4.6e-08 Score=108.38 Aligned_cols=148 Identities=13% Similarity=0.125 Sum_probs=97.9
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHhhC-----C-C-------CCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---
Q psy1308 262 LEQRLKDRIVGQESAINIISAAIKRKEN-----G-W-------TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK--- 325 (607)
Q Consensus 262 L~~~l~~~i~Gq~~ai~~l~~~i~~~~~-----~-~-------~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~--- 325 (607)
|...+...+.|++.....+.-.+-.... + . ..-....++|+.|.+|+||+.+++.+++...+..
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~yts 523 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTS 523 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCC
Confidence 4455556788888887776555432211 0 0 1112345899999999999999999999765431
Q ss_pred CCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecC-CC
Q psy1308 326 KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDG-KG 404 (607)
Q Consensus 326 ~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~-~g 404 (607)
..+++.+.++.... ......|- -..-.+++..+.+|+++|||++++++..|..|+++|+++.++-. .|
T Consensus 524 G~~~s~vgLTa~~~------~~d~~tG~-----~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 524 GKSSSSVGLTASIK------FNESDNGR-----AMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred CCCCccccccchhh------hcccccCc-----ccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCC
Confidence 24677776665311 11111110 00112346678899999999999999999999999999987633 23
Q ss_pred -cEEecCceEEEEecCc
Q psy1308 405 -KTIECKDAIFVMTSNL 420 (607)
Q Consensus 405 -~~~~~~~~~iI~tsn~ 420 (607)
...-..++.||+++|-
T Consensus 593 i~~tL~ar~rVIAAaNP 609 (915)
T PTZ00111 593 IVATLKAETAILASCNP 609 (915)
T ss_pred cceecCCCeEEEEEcCC
Confidence 3334478899999993
No 242
>PRK05642 DNA replication initiation factor; Validated
Probab=98.82 E-value=4.8e-08 Score=94.52 Aligned_cols=163 Identities=15% Similarity=0.249 Sum_probs=107.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.++++|++|+|||.|+++++..+... ......+++..+... ...+.+.++.. .+|++|+
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLAELLDR------------------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHHHHHhh------------------hHHHHHhhhhC--CEEEEec
Confidence 67899999999999999998876433 223344444332110 01223334333 4899999
Q ss_pred CCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcch
Q psy1308 379 VDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDV 456 (607)
Q Consensus 379 iek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (607)
++... +..+..|+.++..- .+ .+..+|+||+.....+.
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~--~~--------~g~~ilits~~~p~~l~------------------------------ 145 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRL--RD--------SGRRLLLAASKSPRELP------------------------------ 145 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHH--Hh--------cCCEEEEeCCCCHHHcC------------------------------
Confidence 98764 56677888888631 11 23357888885544321
Q ss_pred hcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHcc
Q psy1308 457 TISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADG 534 (607)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~ 534 (607)
.+. |++.+|+. .++.+.|++.++...+++..... . + +.++++++++|++
T Consensus 146 -----------------~~~-~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~-------~-~--~~l~~ev~~~L~~- 196 (234)
T PRK05642 146 -----------------IKL-PDLKSRLTLALVFQMRGLSDEDKLRALQLRASR-------R-G--LHLTDEVGHFILT- 196 (234)
T ss_pred -----------------ccC-ccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------c-C--CCCCHHHHHHHHH-
Confidence 012 88999984 45667899999999997753321 1 2 6789999999985
Q ss_pred CCCCCCccchhHHHHHHH
Q psy1308 535 YDVHYGARSIKHEVERQV 552 (607)
Q Consensus 535 ~~~~~GaR~L~~~i~~~i 552 (607)
..+..+|.+.+.+++..
T Consensus 197 -~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 197 -RGTRSMSALFDLLERLD 213 (234)
T ss_pred -hcCCCHHHHHHHHHHHH
Confidence 34567899999988754
No 243
>KOG0734|consensus
Probab=98.82 E-value=4.9e-08 Score=99.58 Aligned_cols=130 Identities=23% Similarity=0.337 Sum_probs=81.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC--CC--CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENG--WT--DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~--~~--~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..+.|-+++...+.+.+...+.- ++ ...-|--++++||||+|||.|||++|-.. .-||....-+++.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----~VPFF~~sGSEFd----- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----GVPFFYASGSEFD----- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----CCCeEeccccchh-----
Confidence 45788888888776666433211 11 12235579999999999999999999443 4456555555542
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
..+.| +|...-..+....++...|||||||||.... ..++.||-=|| |.+.+ ..+
T Consensus 375 Em~VG-----vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD--------GF~qN-eGi 440 (752)
T KOG0734|consen 375 EMFVG-----VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD--------GFKQN-EGI 440 (752)
T ss_pred hhhhc-----ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc--------CcCcC-Cce
Confidence 23334 2333334566667777799999999997521 23455555444 22211 367
Q ss_pred EEEEecCc
Q psy1308 413 IFVMTSNL 420 (607)
Q Consensus 413 ~iI~tsn~ 420 (607)
|||.+||.
T Consensus 441 IvigATNf 448 (752)
T KOG0734|consen 441 IVIGATNF 448 (752)
T ss_pred EEEeccCC
Confidence 88999994
No 244
>KOG0733|consensus
Probab=98.82 E-value=2.3e-07 Score=96.41 Aligned_cols=127 Identities=24% Similarity=0.373 Sum_probs=84.6
Q ss_pred HhhhhHHHHHHHHHHHHHh-------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc
Q psy1308 269 RIVGQESAINIISAAIKRK-------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~-------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~ 341 (607)
.+-|.+..+..+...+-.. ..|.. .|--++++||||+|||.||+++|..+. -||..+...+.
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~---PprGvLlHGPPGCGKT~lA~AiAgel~----vPf~~isApei---- 259 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVR---PPRGVLLHGPPGCGKTSLANAIAGELG----VPFLSISAPEI---- 259 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCC---CCCceeeeCCCCccHHHHHHHHhhhcC----CceEeecchhh----
Confidence 4667777777766655321 12222 133799999999999999999998874 45877765443
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhC---CCeEEEEecCCccCHH-----------HHHHHHHhhccceeecCCCcEE
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKC---PNAVVLFDEVDKAHPD-----------VLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~---~~~vl~lDEiek~~~~-----------~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
+ .|+.|. ....+.+.++.+ -.|++||||||...|. ++..|+..|++-..+--.|
T Consensus 260 -----v---SGvSGE-SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g--- 327 (802)
T KOG0733|consen 260 -----V---SGVSGE-SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG--- 327 (802)
T ss_pred -----h---cccCcc-cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC---
Confidence 1 244443 233445555444 4799999999987664 7788999998654443222
Q ss_pred ecCceEEEEecCc
Q psy1308 408 ECKDAIFVMTSNL 420 (607)
Q Consensus 408 ~~~~~~iI~tsn~ 420 (607)
..+++|.+||.
T Consensus 328 --~~VlVIgATnR 338 (802)
T KOG0733|consen 328 --DPVLVIGATNR 338 (802)
T ss_pred --CCeEEEecCCC
Confidence 34789999993
No 245
>PF13606 Ank_3: Ankyrin repeat
Probab=98.82 E-value=4e-09 Score=65.65 Aligned_cols=30 Identities=40% Similarity=0.603 Sum_probs=27.8
Q ss_pred CCcchhhHHHhcCCHHHHHHHHhcCCCCCc
Q psy1308 188 LGFSALHYGVVAGNTEVVELLLKSGADPTV 217 (607)
Q Consensus 188 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 217 (607)
+|+||||+||..|+.++|++|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 399999999999999999999999999874
No 246
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.3e-08 Score=98.34 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=91.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccC-----------------cCCceE
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRD-----------------KKEAFI 330 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~-----------------~~~~~~ 330 (607)
..++||+.+.+.+..+..-.+ .+++.||+|||||.+++.+...+..- ..++..
T Consensus 179 ~DV~GQ~~AKrAleiAAAGgH----------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~ 248 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGGH----------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCP 248 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcCC----------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCc
Confidence 359999999987755543222 58999999999999999887665220 011110
Q ss_pred Eeecccccc-cc--hhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecC--CCc
Q psy1308 331 RLDMSEYQE-KH--EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDG--KGK 405 (607)
Q Consensus 331 ~l~~a~~~~-~~--~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~--~g~ 405 (607)
......|.. +| +...++|. + +....+.+..+++||+||||.-.....+++.|.+-+|+|++.-. .+.
T Consensus 249 ~~~~rPFr~PHHsaS~~aLvGG---G-----~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~ 320 (490)
T COG0606 249 LKIHRPFRAPHHSASLAALVGG---G-----GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSK 320 (490)
T ss_pred cceeCCccCCCccchHHHHhCC---C-----CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCe
Confidence 111111111 12 23456552 2 22234556788999999999999999999999999999997753 444
Q ss_pred EEecCceEEEEecCcc
Q psy1308 406 TIECKDAIFVMTSNLA 421 (607)
Q Consensus 406 ~~~~~~~~iI~tsn~~ 421 (607)
.....+..+|+++|.-
T Consensus 321 v~ypa~Fqlv~AmNpc 336 (490)
T COG0606 321 VTYPARFQLVAAMNPC 336 (490)
T ss_pred eEEeeeeEEhhhcCCC
Confidence 5556788888888843
No 247
>KOG0818|consensus
Probab=98.79 E-value=1.1e-08 Score=102.42 Aligned_cols=92 Identities=27% Similarity=0.367 Sum_probs=79.2
Q ss_pred hHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh
Q psy1308 154 TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233 (607)
Q Consensus 154 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~ 233 (607)
-||..++.|+.+..--||..|+++|...... |.||||.|+..|+..-+++|+-+|||++..|.+|.||+.+|...|
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpek----g~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~g 211 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEK----GNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGG 211 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCccc----CCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcC
Confidence 5788888888888877888888888776554 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHH
Q psy1308 234 IKQILQKYAEKYADLQ 249 (607)
Q Consensus 234 ~~~~~~~ll~~~~~~~ 249 (607)
+.++...|++..-+..
T Consensus 212 H~~laeRl~e~~y~vt 227 (669)
T KOG0818|consen 212 HHELAERLVEIQYELT 227 (669)
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999988887654443
No 248
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.78 E-value=5.9e-08 Score=102.75 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=88.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc----------
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ---------- 338 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~---------- 338 (607)
.+.||..+++.+..... + .-++++.|++|+|||.+++.++..+... .+-..++.+...
T Consensus 192 ~v~Gq~~~~~al~laa~----~------G~~llliG~~GsGKTtLak~L~gllpp~--~g~e~le~~~i~s~~g~~~~~~ 259 (506)
T PRK09862 192 DVIGQEQGKRGLEITAA----G------GHNLLLIGPPGTGKTMLASRINGLLPDL--SNEEALESAAILSLVNAESVQK 259 (506)
T ss_pred EEECcHHHHhhhheecc----C------CcEEEEECCCCCcHHHHHHHHhccCCCC--CCcEEEecchhhhhhccccccC
Confidence 35677766655432221 1 1278999999999999999999876432 112223322211
Q ss_pred ---------ccc--hhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeec--CCCc
Q psy1308 339 ---------EKH--EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD--GKGK 405 (607)
Q Consensus 339 ---------~~~--~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~--~~g~ 405 (607)
.|+ ....++|.. .....+.+..+++||+|+||++.+++.+|..|++.+++|.++. .++.
T Consensus 260 ~~~~rPfr~ph~~~s~~~l~GGg--------~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~ 331 (506)
T PRK09862 260 QWRQRPFRSPHHSASLTAMVGGG--------AIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAK 331 (506)
T ss_pred CcCCCCccCCCccchHHHHhCCC--------ceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcc
Confidence 111 122344411 0123467889999999999999999999999999999999853 3444
Q ss_pred EEecCceEEEEecCcc
Q psy1308 406 TIECKDAIFVMTSNLA 421 (607)
Q Consensus 406 ~~~~~~~~iI~tsn~~ 421 (607)
.....++++|+|+|-.
T Consensus 332 ~~~pa~f~lIAa~NP~ 347 (506)
T PRK09862 332 ITYPARFQLVAAMNPS 347 (506)
T ss_pred eeccCCEEEEEeecCc
Confidence 4456889999999943
No 249
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.78 E-value=7.8e-09 Score=66.40 Aligned_cols=33 Identities=45% Similarity=0.746 Sum_probs=31.0
Q ss_pred CCcchhhHHHhcCCHHHHHHHHhcCCCCCccCC
Q psy1308 188 LGFSALHYGVVAGNTEVVELLLKSGADPTVKDN 220 (607)
Q Consensus 188 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 220 (607)
+|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 399999999999999999999999999999874
No 250
>KOG0728|consensus
Probab=98.78 E-value=5.1e-08 Score=90.20 Aligned_cols=162 Identities=27% Similarity=0.403 Sum_probs=106.4
Q ss_pred hhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc
Q psy1308 270 IVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~ 341 (607)
+-|-+..++.+.+.+.-. ..|+ .+|--+++.||+|+|||.++++++.+..- .|+++.-++.
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGI---aQPKGvlLygppgtGktLlaraVahht~c----~firvsgsel---- 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGI---AQPKGVLLYGPPGTGKTLLARAVAHHTDC----TFIRVSGSEL---- 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCC---CCCcceEEecCCCCchhHHHHHHHhhcce----EEEEechHHH----
Confidence 445566666665555322 2222 34667889999999999999999977533 3777765544
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
+.+++|.... ....+.-..+....+++|.||||.. +.++|...|.++..- +|.. ..+
T Consensus 218 -vqk~igegsr-----mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql-----dgfe-atk 285 (404)
T KOG0728|consen 218 -VQKYIGEGSR-----MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-----DGFE-ATK 285 (404)
T ss_pred -HHHHhhhhHH-----HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc-----cccc-ccc
Confidence 7788873211 1223444556667899999999985 567999988887621 2222 236
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
|.-+||+||.- ++..++| ++ | +|||.-+.|
T Consensus 286 nikvimatnri-------------------------------------------dild~al---lr-p---gridrkief 315 (404)
T KOG0728|consen 286 NIKVIMATNRI-------------------------------------------DILDPAL---LR-P---GRIDRKIEF 315 (404)
T ss_pred ceEEEEecccc-------------------------------------------ccccHhh---cC-C---CcccccccC
Confidence 77899999921 1122222 22 3 589999999
Q ss_pred ccCCHHHHHHHHHH
Q psy1308 491 LPFSKSELHTLVCR 504 (607)
Q Consensus 491 ~pl~~~~~~~i~~~ 504 (607)
.|.+.+.-.+|++.
T Consensus 316 p~p~e~ar~~ilki 329 (404)
T KOG0728|consen 316 PPPNEEARLDILKI 329 (404)
T ss_pred CCCCHHHHHHHHHH
Confidence 99988877777553
No 251
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.78 E-value=8.7e-08 Score=93.41 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=75.4
Q ss_pred CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCccccc
Q psy1308 371 NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQ 450 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (607)
.||+|+||++.++-+...+|-+.+++- --.++||+||.|-..+.. ++..
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse------------~aPIii~AtNRG~~kiRG-------------------Td~~ 340 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESE------------LAPIIILATNRGMTKIRG-------------------TDIE 340 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcc------------cCcEEEEEcCCceeeecc-------------------cCCc
Confidence 589999999999999999999999842 235799999977554421 1111
Q ss_pred CCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHH
Q psy1308 451 GSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETI 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~ 530 (607)
. .|--+.+|+.|+ -|+...|++++++..|+..-.. +. .+.++++|+++
T Consensus 341 s---------------------PhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~-------ee---~i~l~~~Ale~ 388 (450)
T COG1224 341 S---------------------PHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAK-------EE---DIELSDDALEY 388 (450)
T ss_pred C---------------------CCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhh-------hh---ccccCHHHHHH
Confidence 1 111148999999 7889999999999999875443 22 67889999999
Q ss_pred HHc
Q psy1308 531 LAD 533 (607)
Q Consensus 531 L~~ 533 (607)
|++
T Consensus 389 L~~ 391 (450)
T COG1224 389 LTD 391 (450)
T ss_pred HHh
Confidence 986
No 252
>KOG0783|consensus
Probab=98.76 E-value=2.1e-09 Score=113.48 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=61.3
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCC
Q psy1308 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL---FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLG 189 (607)
Q Consensus 113 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~---~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g 189 (607)
.|.+|..|+|+||+|+..+..+++++|+++|+|++.+|. |||||.|..+|+++++-+||.+|.....++. +|
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk-----eg 119 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK-----EG 119 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc-----cC
Confidence 677888888888888888888888888888888888764 5677777777777777777777766655533 38
Q ss_pred cchhhHHHh
Q psy1308 190 FSALHYGVV 198 (607)
Q Consensus 190 ~TpLh~A~~ 198 (607)
..||..-+.
T Consensus 120 lsplq~~~r 128 (1267)
T KOG0783|consen 120 LSPLQFLSR 128 (1267)
T ss_pred CCHHHHHhh
Confidence 888766554
No 253
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=9e-08 Score=97.67 Aligned_cols=166 Identities=22% Similarity=0.306 Sum_probs=104.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc-cccccchhHhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS-EYQEKHEVAKL 346 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a-~~~~~~~~~~l 346 (607)
..++||..+...+..++..... |-.++|.||+|+||+.+++.+++.+.........+..+. ..........+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl-------~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKL-------HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-------CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 4689999999999888875542 336899999999999999999999865211001111110 00011111111
Q ss_pred -hcCCCCCc-----------------cCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCC
Q psy1308 347 -IGAPPGYL-----------------GHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKG 404 (607)
Q Consensus 347 -lg~~~g~~-----------------g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g 404 (607)
-|..|.+. +-++-..+.+.+.. ..+-|+++||+|++++..++.||+.+|+..
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp------ 169 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP------ 169 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC------
Confidence 12222211 00111112223332 235799999999999999999999998632
Q ss_pred cEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccc
Q psy1308 405 KTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRI 484 (607)
Q Consensus 405 ~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri 484 (607)
.+++||+.|+.... .. |-+.+|+
T Consensus 170 -----~~~~fiLit~~~~~---------------------------------------------------ll-ptIrSRc 192 (351)
T PRK09112 170 -----ARALFILISHSSGR---------------------------------------------------LL-PTIRSRC 192 (351)
T ss_pred -----CCceEEEEECChhh---------------------------------------------------cc-HHHHhhc
Confidence 45677777662110 11 6777888
Q ss_pred cceeeeccCCHHHHHHHHHH
Q psy1308 485 NEIVYFLPFSKSELHTLVCR 504 (607)
Q Consensus 485 ~~iv~f~pl~~~~~~~i~~~ 504 (607)
..+.|.|++.+++.+++..
T Consensus 193 -~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 193 -QPISLKPLDDDELKKALSH 211 (351)
T ss_pred -cEEEecCCCHHHHHHHHHH
Confidence 5889999999999888765
No 254
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.75 E-value=5.9e-08 Score=102.32 Aligned_cols=173 Identities=12% Similarity=0.263 Sum_probs=111.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
+++++|++|+|||.|+++++..+.... ...++.+++..+.. ....-+.. .....+.+.++. ..+|+||
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~--~dlLiiD 206 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN--DFVNALRN-------NKMEEFKEKYRS--VDLLLID 206 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH--HHHHHHHc-------CCHHHHHHHHHh--CCEEEEe
Confidence 688999999999999999999875431 23345555544321 11111110 011123333333 4699999
Q ss_pred cCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 378 EVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 378 Eiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
|++.+.. ..+..|+.+++.-. . .+..+|+||+.....+..
T Consensus 207 Di~~l~~~~~~~~~l~~~~n~~~--~--------~~~~iiits~~~p~~l~~---------------------------- 248 (405)
T TIGR00362 207 DIQFLAGKERTQEEFFHTFNALH--E--------NGKQIVLTSDRPPKELPG---------------------------- 248 (405)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHH--H--------CCCCEEEecCCCHHHHhh----------------------------
Confidence 9998643 46777777775211 1 123477888865554321
Q ss_pred hhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 456 VTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
+. +.+.+|+. .++.+.|++.++...|+...+.. . .+.++++++++|++
T Consensus 249 -------------------l~-~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-------~---~~~l~~e~l~~ia~ 298 (405)
T TIGR00362 249 -------------------LE-ERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE-------E---GLELPDEVLEFIAK 298 (405)
T ss_pred -------------------hh-hhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHH
Confidence 11 66777885 37899999999999998776643 1 35679999999985
Q ss_pred cCCCCCCccchhHHHHHHH
Q psy1308 534 GYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 534 ~~~~~~GaR~L~~~i~~~i 552 (607)
....++|.|...|.+..
T Consensus 299 --~~~~~~r~l~~~l~~l~ 315 (405)
T TIGR00362 299 --NIRSNVRELEGALNRLL 315 (405)
T ss_pred --hcCCCHHHHHHHHHHHH
Confidence 34678899999887754
No 255
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.75 E-value=3e-07 Score=104.62 Aligned_cols=179 Identities=15% Similarity=0.200 Sum_probs=111.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++||+..+..+...+.+... ...+|+||+|+|||.+++.+++.+.... +..++.++++.+..
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~--------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a--- 256 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQ--------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA--- 256 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCc--------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc---
Confidence 488999998888776655431 2567999999999999999999874321 12355556554321
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHh---h-CCCeEEEEecCCccCH--------HHHHHHHHhhccceeecCCCcEEecC
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLK---K-CPNAVVLFDEVDKAHP--------DVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~---~-~~~~vl~lDEiek~~~--------~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
...|.|. -...+...+. . ....|||||||+.+.. +.-+.|+..++.|.
T Consensus 257 -------g~~~~ge-~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~------------ 316 (852)
T TIGR03345 257 -------GASVKGE-FENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE------------ 316 (852)
T ss_pred -------ccccchH-HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC------------
Confidence 1112221 1112222332 2 3468999999998753 23346778887653
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
..+|.+|+.. +...+. . . .|.|.+||. +|.+
T Consensus 317 -l~~IgaTT~~--e~~~~~---------------------------------~-----------~-d~AL~rRf~-~i~v 347 (852)
T TIGR03345 317 -LRTIAATTWA--EYKKYF---------------------------------E-----------K-DPALTRRFQ-VVKV 347 (852)
T ss_pred -eEEEEecCHH--HHhhhh---------------------------------h-----------c-cHHHHHhCe-EEEe
Confidence 4688888821 110000 0 0 288889994 7899
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.|++.++...|++.....+.. .+ .+.++++++..++.
T Consensus 348 ~eps~~~~~~iL~~~~~~~e~----~~--~v~i~d~al~~~~~ 384 (852)
T TIGR03345 348 EEPDEETAIRMLRGLAPVLEK----HH--GVLILDEAVVAAVE 384 (852)
T ss_pred CCCCHHHHHHHHHHHHHhhhh----cC--CCeeCHHHHHHHHH
Confidence 999999999997544332221 12 36788888888764
No 256
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.9e-07 Score=94.32 Aligned_cols=196 Identities=21% Similarity=0.240 Sum_probs=125.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCc-eEEeecccccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEA-FIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~-~~~l~~a~~~~~~~~~~ll 347 (607)
.+.+.+.-+..+...+.....+.. |..++++|++|||||..++.+.+.+....... .+.+||-.+.....+...+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~----p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGER----PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCC----CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 356677788888777776655544 66689999999999999999999987654444 7999999988877654322
Q ss_pred ----cCCCCCccCCCC---chhhHHHhh-CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 348 ----GAPPGYLGHDDG---GQLTKRLKK-CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 348 ----g~~~g~~g~~~~---~~l~~~~~~-~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
+..| ..|.... ..+.+.+.. ...-||+|||++.+-..-++.|++++.-..-. ..++.+|+.+|
T Consensus 94 ~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~vi~i~n 164 (366)
T COG1474 94 LNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVSIIAVSN 164 (366)
T ss_pred HHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEEEEEEec
Confidence 2212 2222111 113333333 34679999999998776556666666532211 35678888888
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
-..- .....+.+++.|. ..-+.|.|++.+++.
T Consensus 165 ~~~~----------------------------------------~~~ld~rv~s~l~--------~~~I~F~pY~a~el~ 196 (366)
T COG1474 165 DDKF----------------------------------------LDYLDPRVKSSLG--------PSEIVFPPYTAEELY 196 (366)
T ss_pred cHHH----------------------------------------HHHhhhhhhhccC--------cceeeeCCCCHHHHH
Confidence 2211 1112222333333 123899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 500 ~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.|+..-.... + ..-.++++++++++.
T Consensus 197 ~Il~~R~~~~---~-----~~~~~~~~vl~lia~ 222 (366)
T COG1474 197 DILRERVEEG---F-----SAGVIDDDVLKLIAA 222 (366)
T ss_pred HHHHHHHHhh---c-----cCCCcCccHHHHHHH
Confidence 9987666532 1 123578888888874
No 257
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.72 E-value=1.7e-08 Score=64.87 Aligned_cols=32 Identities=50% Similarity=0.622 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy1308 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNLGD 150 (607)
Q Consensus 119 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d 150 (607)
+|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 47888888888888888888888888888765
No 258
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.72 E-value=1.4e-07 Score=84.03 Aligned_cols=109 Identities=26% Similarity=0.323 Sum_probs=72.2
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
.+++++|++|+|||.+++.++..+... ...+..+++.............+.. ..............+++++|
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~lilD 91 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGLVVAELFGHF-------LVRLLFELAEKAKPGVLFID 91 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhhHHHHHhhhh-------hHhHHHHhhccCCCeEEEEe
Confidence 378899999999999999999988543 4567778776655433322221100 00011122334457899999
Q ss_pred cCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 378 EVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 378 Eiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
|++.+++.....+++.++...... ....++.+|++++
T Consensus 92 e~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~ 128 (151)
T cd00009 92 EIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATN 128 (151)
T ss_pred ChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecC
Confidence 999998888888888887543211 1235678889988
No 259
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.71 E-value=3.3e-08 Score=89.77 Aligned_cols=130 Identities=24% Similarity=0.299 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc----cccchhHhhh
Q psy1308 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY----QEKHEVAKLI 347 (607)
Q Consensus 272 Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~----~~~~~~~~ll 347 (607)
||+.+++.+...+..... |-.++|+||.|+||+.+|+.+++.+..........-.|... .+.+.-..++
T Consensus 1 gq~~~~~~L~~~~~~~~l-------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL-------PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHcCCc-------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 688888888887765532 33689999999999999999999987653221100011000 0000000111
Q ss_pred cCCCC--CccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 348 GAPPG--YLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 348 g~~~g--~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
..... ..+.++-..+...+.. .++-|++|||+|+++++.+++||+.+|+. ..+++||++|+
T Consensus 74 ~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-----------p~~~~fiL~t~ 140 (162)
T PF13177_consen 74 KPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-----------PENTYFILITN 140 (162)
T ss_dssp ETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-----------TTTEEEEEEES
T ss_pred ecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-----------CCCEEEEEEEC
Confidence 11100 1111111112222222 23569999999999999999999999964 26888999887
No 260
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=1.6e-07 Score=99.12 Aligned_cols=172 Identities=13% Similarity=0.260 Sum_probs=111.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
+++++|++|+|||.|+++++..+... ...+..+.+..+.. .....+.. + ....+...+ ....+|+|||
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~~~~f~~--~~~~~l~~--~-----~~~~f~~~~--~~~dvLiIDD 210 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVRSELFTE--HLVSAIRS--G-----EMQRFRQFY--RNVDALFIED 210 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEeeHHHHHH--HHHHHHhc--c-----hHHHHHHHc--ccCCEEEEcc
Confidence 68899999999999999999987543 23344444433321 11111210 0 001112222 2346999999
Q ss_pred CCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcch
Q psy1308 379 VDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDV 456 (607)
Q Consensus 379 iek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (607)
|+.+.. ..|..|+.++..-. + .+..+|+||+.....+..
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~--~--------~~k~IIlts~~~p~~l~~----------------------------- 251 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLH--T--------EGKLIVISSTCAPQDLKA----------------------------- 251 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHH--H--------CCCcEEEecCCCHHHHhh-----------------------------
Confidence 998753 56777777765211 1 122588888865554421
Q ss_pred hcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHcc
Q psy1308 457 TISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADG 534 (607)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~ 534 (607)
+. +.+.+|+. .++.+.|++.++...|++..... .+ +.++++++++|+.
T Consensus 252 ------------------l~-~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~--------~~--~~l~~evl~~la~- 301 (445)
T PRK12422 252 ------------------ME-ERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA--------LS--IRIEETALDFLIE- 301 (445)
T ss_pred ------------------hH-HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-
Confidence 11 66777884 68889999999999998766642 12 6789999999985
Q ss_pred CCCCCCccchhHHHHHHH
Q psy1308 535 YDVHYGARSIKHEVERQV 552 (607)
Q Consensus 535 ~~~~~GaR~L~~~i~~~i 552 (607)
....++|+|.+.+.+..
T Consensus 302 -~~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 302 -ALSSNVKSLLHALTLLA 318 (445)
T ss_pred -hcCCCHHHHHHHHHHHH
Confidence 34579999999999874
No 261
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.70 E-value=1.7e-07 Score=109.38 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=71.5
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch---------h-----------------Hhh---hc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE---------V-----------------AKL---IG 348 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~---------~-----------------~~l---lg 348 (607)
--+|++||+|||||.+||++|...+ -||+.+.++.+-+... + .++ +-
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es~----VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNSY----VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhcC----CceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 3799999999999999999998764 4699998876643210 0 000 00
Q ss_pred CCCCCccCCCC----chhhHHHhhCCCeEEEEecCCccCHH-----HHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 349 APPGYLGHDDG----GQLTKRLKKCPNAVVLFDEVDKAHPD-----VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 349 ~~~g~~g~~~~----~~l~~~~~~~~~~vl~lDEiek~~~~-----~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
...++++.+.+ ..+.+..++...|||+|||||.+... ....|+..|+...-. ....+++||+|||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATN 1780 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCC
Confidence 00111222211 12455667777999999999998754 356677777631100 1235789999999
Q ss_pred c
Q psy1308 420 L 420 (607)
Q Consensus 420 ~ 420 (607)
.
T Consensus 1781 R 1781 (2281)
T CHL00206 1781 I 1781 (2281)
T ss_pred C
Confidence 3
No 262
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=100.09 Aligned_cols=177 Identities=17% Similarity=0.296 Sum_probs=113.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhh-CCCeEEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK-CPNAVVLF 376 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~-~~~~vl~l 376 (607)
+++++|++|+|||.|+++++..+.... ......+.+..+.. ....-++.. .+.+....+. ....+|+|
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~--~~~~~l~~~--------~~~~~~~~~~~~~~dvLiI 212 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR--KAVDILQKT--------HKEIEQFKNEICQNDVLII 212 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH--HHHHHHHHh--------hhHHHHHHHHhccCCEEEE
Confidence 588999999999999999998765321 22333344333221 111111100 0111122111 23469999
Q ss_pred ecCCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCc
Q psy1308 377 DEVDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNL 454 (607)
Q Consensus 377 DEiek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (607)
||++.+. +..+..|..++..-. +. +..+|+||+.....+.
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~--~~--------~k~iIltsd~~P~~l~---------------------------- 254 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFI--EN--------DKQLFFSSDKSPELLN---------------------------- 254 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHH--Hc--------CCcEEEECCCCHHHHh----------------------------
Confidence 9999876 678888888876321 11 1247899886554431
Q ss_pred chhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 455 DVTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
.+. +.+.+|+. -++.+.|++.++..+|+.+.+.. .|..+.++++++++|+
T Consensus 255 -------------------~l~-~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~--------~gl~~~l~~evl~~Ia 306 (450)
T PRK14087 255 -------------------GFD-NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN--------QNIKQEVTEEAINFIS 306 (450)
T ss_pred -------------------hcc-HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh--------cCCCCCCCHHHHHHHH
Confidence 122 66777774 47888999999999998887753 1333478999999998
Q ss_pred ccCCCCCCccchhHHHHHHHH
Q psy1308 533 DGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 533 ~~~~~~~GaR~L~~~i~~~i~ 553 (607)
. ...+.+|.|.+.+.+...
T Consensus 307 ~--~~~gd~R~L~gaL~~l~~ 325 (450)
T PRK14087 307 N--YYSDDVRKIKGSVSRLNF 325 (450)
T ss_pred H--ccCCCHHHHHHHHHHHHH
Confidence 4 345789999999987653
No 263
>KOG0739|consensus
Probab=98.70 E-value=7.2e-08 Score=91.55 Aligned_cols=133 Identities=21% Similarity=0.317 Sum_probs=90.3
Q ss_pred hHhhhhHHHHHHHHHHHHHh---hCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRK---ENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~---~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..+.|.+.+.+.+.+++--. -.-++...+|. -+++.||+|+||++||+++|...+ ..|+.+..+.+ +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn----STFFSvSSSDL-----v 203 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSSDL-----V 203 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC----CceEEeehHHH-----H
Confidence 35788888888888776322 12245566777 899999999999999999997654 34777766554 6
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
++++|..... ...+.+..+....+|||+||||.+-. .+-..||--|+ |.-.|-..+
T Consensus 204 SKWmGESEkL-----VknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq--------GVG~d~~gv 270 (439)
T KOG0739|consen 204 SKWMGESEKL-----VKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ--------GVGNDNDGV 270 (439)
T ss_pred HHHhccHHHH-----HHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh--------ccccCCCce
Confidence 7788744321 23567778888899999999997632 23333333332 222344667
Q ss_pred EEEEecCcch
Q psy1308 413 IFVMTSNLAS 422 (607)
Q Consensus 413 ~iI~tsn~~~ 422 (607)
+++-+||+.-
T Consensus 271 LVLgATNiPw 280 (439)
T KOG0739|consen 271 LVLGATNIPW 280 (439)
T ss_pred EEEecCCCch
Confidence 8888999643
No 264
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=7.1e-08 Score=98.97 Aligned_cols=167 Identities=17% Similarity=0.265 Sum_probs=102.7
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEE-----eecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR-----LDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~-----l~~a~~~~~~~ 342 (607)
..++||+.+++.+..++...+. |-.++|+||+|+||+.+|..+++.+......+... -.+..-.....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl-------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRL-------HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCC-------CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 3689999999999988876542 23699999999999999999999986532111000 00000000111
Q ss_pred hHhhh-cCCCCCccC-----CCC---------chhhH---HHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceee
Q psy1308 343 VAKLI-GAPPGYLGH-----DDG---------GQLTK---RLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLT 400 (607)
Q Consensus 343 ~~~ll-g~~~g~~g~-----~~~---------~~l~~---~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~ 400 (607)
...+- |..|.+.-. +.+ .++.. .+.. ..+-|++|||+|.+++..++.||+.+++..
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp-- 169 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP-- 169 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC--
Confidence 11111 222221100 011 11122 2221 235699999999999999999999999532
Q ss_pred cCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhh
Q psy1308 401 DGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEF 480 (607)
Q Consensus 401 ~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el 480 (607)
.+++||++|+.... .. |-+
T Consensus 170 ---------~~~~~IL~t~~~~~---------------------------------------------------ll-pti 188 (365)
T PRK07471 170 ---------ARSLFLLVSHAPAR---------------------------------------------------LL-PTI 188 (365)
T ss_pred ---------CCeEEEEEECCchh---------------------------------------------------ch-HHh
Confidence 45678887772211 11 556
Q ss_pred hccccceeeeccCCHHHHHHHHHHH
Q psy1308 481 LGRINEIVYFLPFSKSELHTLVCRE 505 (607)
Q Consensus 481 ~~ri~~iv~f~pl~~~~~~~i~~~~ 505 (607)
.+|. ..+.|.|++.+++.+++...
T Consensus 189 ~SRc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 189 RSRC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred hccc-eEEECCCCCHHHHHHHHHHh
Confidence 6677 56788999999998887664
No 265
>KOG0744|consensus
Probab=98.69 E-value=3.7e-08 Score=94.61 Aligned_cols=151 Identities=20% Similarity=0.287 Sum_probs=96.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCC-CeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCP-NAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~-~~vl~lD 377 (607)
.++++||||+|||.|+|++|+.+-.+-.+.+..-.+-+.+.+...+++|+.....+. ..-.++.++++... --.|+||
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~-kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVA-KMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHH-HHHHHHHHHHhCCCcEEEEEeH
Confidence 689999999999999999999985543333333344455556667888874322111 00012334444322 3457899
Q ss_pred cCCccCH---------------HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccC
Q psy1308 378 EVDKAHP---------------DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKR 442 (607)
Q Consensus 378 Eiek~~~---------------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~ 442 (607)
|+|.+.. .+++.||.-+|.-+ ...|+++.+|||+... +
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl~~s-i----------------- 310 (423)
T KOG0744|consen 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNLTDS-I----------------- 310 (423)
T ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccchHHH-H-----------------
Confidence 9998632 27889998887322 3578999999995321 1
Q ss_pred CCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHH
Q psy1308 443 TPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAK 511 (607)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~ 511 (607)
.-.|..|-|.+..--|++...+.+|.+..+.++.+
T Consensus 311 ----------------------------------D~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 311 ----------------------------------DVAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred ----------------------------------HHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 04456666666666677777777777777776654
No 266
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.69 E-value=4.6e-07 Score=84.83 Aligned_cols=155 Identities=17% Similarity=0.287 Sum_probs=92.3
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEe-e---ccccc--ccchhHhhhcCCCCCccCCCCchhhHHHhh---
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRL-D---MSEYQ--EKHEVAKLIGAPPGYLGHDDGGQLTKRLKK--- 368 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l-~---~a~~~--~~~~~~~llg~~~g~~g~~~~~~l~~~~~~--- 368 (607)
-.++|+||+|+|||.+++.+++.+.........+. . |.... .+.+. .++....+..+.+.-..+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHHHHHHHHHccCcc
Confidence 47999999999999999999998864311100000 0 00000 00000 000000000111111112233333
Q ss_pred -CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcc
Q psy1308 369 -CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSIS 447 (607)
Q Consensus 369 -~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 447 (607)
.+..++++||+++++++.++.|+..+++.. .+++||++++.. ..
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~~~-~~----------------------- 138 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPP-----------PNTLFILITPSP-EK----------------------- 138 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCC-----------CCeEEEEEECCh-Hh-----------------------
Confidence 346799999999999999999999998532 466788877611 11
Q ss_pred cccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH
Q psy1308 448 KSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV 527 (607)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a 527 (607)
+. +.+.+|. .++.|.|++.+++.+++... | +++++
T Consensus 139 ---------------------------l~-~~i~sr~-~~~~~~~~~~~~~~~~l~~~------------g----i~~~~ 173 (188)
T TIGR00678 139 ---------------------------LL-PTIRSRC-QVLPFPPLSEEALLQWLIRQ------------G----ISEEA 173 (188)
T ss_pred ---------------------------Ch-HHHHhhc-EEeeCCCCCHHHHHHHHHHc------------C----CCHHH
Confidence 11 5666777 57999999999988776543 2 57888
Q ss_pred HHHHHc
Q psy1308 528 ETILAD 533 (607)
Q Consensus 528 ~~~L~~ 533 (607)
++.|+.
T Consensus 174 ~~~i~~ 179 (188)
T TIGR00678 174 AELLLA 179 (188)
T ss_pred HHHHHH
Confidence 888875
No 267
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.2e-07 Score=95.34 Aligned_cols=165 Identities=19% Similarity=0.335 Sum_probs=104.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC-CceEEeecccccccchhHhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK-EAFIRLDMSEYQEKHEVAKL 346 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~-~~~~~l~~a~~~~~~~~~~l 346 (607)
..++||+.+++.+...+..... |-.++|+||.|+||+.+|+.+++.+..... +.+....+...+ +.++..+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl-------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~-hPDl~~i 75 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRI-------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN-HPDLLWV 75 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC-CCCEEEE
Confidence 4689999999999998876542 337999999999999999999999865421 001110011110 0000000
Q ss_pred h------cC---------------CCCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeec
Q psy1308 347 I------GA---------------PPGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD 401 (607)
Q Consensus 347 l------g~---------------~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~ 401 (607)
. |. ..+.++-++-..+...+... .+-|++||++|+++...++.||+.+|+-
T Consensus 76 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP---- 151 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP---- 151 (314)
T ss_pred eccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC----
Confidence 0 00 00001101111233334433 3689999999999999999999999962
Q ss_pred CCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh
Q psy1308 402 GKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL 481 (607)
Q Consensus 402 ~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~ 481 (607)
. +++||++|+.. +. +. |-+.
T Consensus 152 -------p-~~~fILi~~~~-~~--------------------------------------------------Ll-~TI~ 171 (314)
T PRK07399 152 -------G-NGTLILIAPSP-ES--------------------------------------------------LL-PTIV 171 (314)
T ss_pred -------C-CCeEEEEECCh-Hh--------------------------------------------------Cc-HHHH
Confidence 1 45678777611 11 22 6677
Q ss_pred ccccceeeeccCCHHHHHHHHHHH
Q psy1308 482 GRINEIVYFLPFSKSELHTLVCRE 505 (607)
Q Consensus 482 ~ri~~iv~f~pl~~~~~~~i~~~~ 505 (607)
+|. .++.|.|++.+++.+++...
T Consensus 172 SRc-q~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 172 SRC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred hhc-eEEecCCCCHHHHHHHHHHh
Confidence 887 67899999999998887654
No 268
>KOG0506|consensus
Probab=98.67 E-value=2.5e-08 Score=99.39 Aligned_cols=92 Identities=29% Similarity=0.407 Sum_probs=73.2
Q ss_pred CCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCchHHHHHHc
Q psy1308 83 QSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANPNLGDLFNTVHRTAAE 161 (607)
Q Consensus 83 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~~~l~~A~~~ 161 (607)
+.++-.++++|+..|++..++.+.-.+ .|++.+|.+.+|+||.|+..|+.+++++|++. +.+++.+|.|
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g-~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw--------- 572 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQG-MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRW--------- 572 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhc-ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhcc---------
Confidence 345567788999999999998888888 89999999999999999999999999999865 7778777765
Q ss_pred CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhc
Q psy1308 162 KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS 211 (607)
Q Consensus 162 ~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 211 (607)
|+|||--|...+|.+++++|-+.
T Consensus 573 ---------------------------~rtPlDdA~~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 573 ---------------------------GRTPLDDAKHFKHKEVVKLLEEA 595 (622)
T ss_pred ---------------------------CCCcchHhHhcCcHHHHHHHHHH
Confidence 66666666666666666666554
No 269
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.66 E-value=3.3e-07 Score=102.24 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=114.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|.+..++.+.+.+.+.. +..++++||+|+|||.+++.++..+... ..|+...++..+.-. ...++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~--------~~n~LLvGppGvGKT~lae~la~~i~~~-~vP~~l~~~~~~~l~--~~~lla 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR--------KNNPLLVGESGVGKTAIAEGLAWRIVQG-DVPEVMADCTIYSLD--IGSLLA 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC--------CCCeEEECCCCCCHHHHHHHHHHHHHhc-CCCchhcCCeEEecc--HHHHhc
Confidence 37899999999988777632 2346789999999999999999876433 334444444444321 222221
Q ss_pred CCCCCccCCCC--chhhHHHhhCCCeEEEEecCCcc---------CHHHHHHHHHhhccceeecCCCcEEecCceEEEEe
Q psy1308 349 APPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKA---------HPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMT 417 (607)
Q Consensus 349 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~---------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~t 417 (607)
...|.|.-+. ..+...+++...++||||||+.+ ..++.+.|..++..| +..+|.+
T Consensus 256 -G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-------------~i~vIgA 321 (758)
T PRK11034 256 -GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-------------KIRVIGS 321 (758)
T ss_pred -ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-------------CeEEEec
Confidence 1223332111 12334455667889999999875 234555666676643 4568888
Q ss_pred cCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHH
Q psy1308 418 SNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSE 497 (607)
Q Consensus 418 sn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~ 497 (607)
|+.. +..++. . . .|.|.+||+ .|.+.+++.++
T Consensus 322 Tt~~--E~~~~~---------------------------------~-----------~-D~AL~rRFq-~I~v~ePs~~~ 353 (758)
T PRK11034 322 TTYQ--EFSNIF---------------------------------E-----------K-DRALARRFQ-KIDITEPSIEE 353 (758)
T ss_pred CChH--HHHHHh---------------------------------h-----------c-cHHHHhhCc-EEEeCCCCHHH
Confidence 8832 111100 0 0 277888995 57888889999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
...|++.....+.. .+ .+.++++|+...+
T Consensus 354 ~~~IL~~~~~~ye~----~h--~v~i~~~al~~a~ 382 (758)
T PRK11034 354 TVQIINGLKPKYEA----HH--DVRYTAKAVRAAV 382 (758)
T ss_pred HHHHHHHHHHHhhh----cc--CCCcCHHHHHHHH
Confidence 99997765544332 22 4567788876654
No 270
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.8e-07 Score=94.97 Aligned_cols=121 Identities=20% Similarity=0.334 Sum_probs=77.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++||+.+++.+...+..... |-.++|+||.|+||+.+|+.+++.+......+ .+.++..+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~-------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~----------~h~D~~~~~ 66 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF-------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQR----------EYVDIIEFK 66 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-------CceEEeECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCeEEec
Confidence 3588999999998888754331 33689999999999999999999875431110 000111110
Q ss_pred cCCCCCccCCCCchhhHHHh---hC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 348 GAPPGYLGHDDGGQLTKRLK---KC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~---~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
.......+. ..+.+.++ .. .+-|+++|++|+++.+.++.||+.+|+- ..+++||++|+
T Consensus 67 ~~~~~~i~v---~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-----------p~~t~~il~~~ 131 (313)
T PRK05564 67 PINKKSIGV---DDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCE 131 (313)
T ss_pred cccCCCCCH---HHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC-----------CCCeEEEEEeC
Confidence 000011111 12222222 22 3569999999999999999999999963 25677888765
No 271
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.65 E-value=5e-07 Score=96.50 Aligned_cols=173 Identities=14% Similarity=0.270 Sum_probs=111.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
+++++||+|+|||.|+++++..+.... ...+..+++..+... ....+.. .....+.+.++ ...+|+||
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~--~~~~~~~-------~~~~~~~~~~~--~~dlLiiD 218 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND--FVNALRN-------NTMEEFKEKYR--SVDVLLID 218 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH--HHHHHHc-------CcHHHHHHHHh--cCCEEEEe
Confidence 688999999999999999999875431 223444555444211 1111110 01112333333 35699999
Q ss_pred cCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 378 EVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 378 Eiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
||+.+.. ..+..|+.+++.-. +. +..+|+||+.....+..
T Consensus 219 Di~~l~~~~~~~~~l~~~~n~l~--~~--------~~~iiits~~~p~~l~~---------------------------- 260 (450)
T PRK00149 219 DIQFLAGKERTQEEFFHTFNALH--EA--------GKQIVLTSDRPPKELPG---------------------------- 260 (450)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHH--HC--------CCcEEEECCCCHHHHHH----------------------------
Confidence 9998643 46677777665211 11 12367788865544421
Q ss_pred hhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 456 VTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
+. +.+.+|+. .++.+.|++.++..+|++..+.. . .+.++++++++|+.
T Consensus 261 -------------------l~-~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------~---~~~l~~e~l~~ia~ 310 (450)
T PRK00149 261 -------------------LE-ERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-------E---GIDLPDEVLEFIAK 310 (450)
T ss_pred -------------------HH-HHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHc
Confidence 11 66778885 47889999999999998776652 1 36789999999985
Q ss_pred cCCCCCCccchhHHHHHHH
Q psy1308 534 GYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 534 ~~~~~~GaR~L~~~i~~~i 552 (607)
...+.+|.|...|.+..
T Consensus 311 --~~~~~~R~l~~~l~~l~ 327 (450)
T PRK00149 311 --NITSNVRELEGALNRLI 327 (450)
T ss_pred --CcCCCHHHHHHHHHHHH
Confidence 34678899998887654
No 272
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.65 E-value=2.1e-07 Score=88.95 Aligned_cols=173 Identities=17% Similarity=0.288 Sum_probs=105.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccC-cCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRD-KKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~-~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
++.++|++|+|||.|.++++..+... .+.....++...+... ....+-. +.-..+...++ ...+++||
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~--~~~~~~~-------~~~~~~~~~~~--~~DlL~iD 104 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE--FADALRD-------GEIEEFKDRLR--SADLLIID 104 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH--HHHHHHT-------TSHHHHHHHHC--TSSEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH--HHHHHHc-------ccchhhhhhhh--cCCEEEEe
Confidence 57899999999999999999876442 1333455555444321 1222210 01112222233 45699999
Q ss_pred cCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 378 EVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 378 Eiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
+++.+... .|..|+.+++.-. . .+..+|+||+....++
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~--~--------~~k~li~ts~~~P~~l------------------------------ 144 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLI--E--------SGKQLILTSDRPPSEL------------------------------ 144 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHH--H--------TTSEEEEEESS-TTTT------------------------------
T ss_pred cchhhcCchHHHHHHHHHHHHHH--h--------hCCeEEEEeCCCCccc------------------------------
Confidence 99998654 5888998887322 1 2334788887433321
Q ss_pred hhcchhhhhhhhhHHHHhccCChhhhccccc--eeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 456 VTISRHFKDHVVQPILKRHFRRDEFLGRINE--IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~--iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
..+. |+|.+|+.. ++...|++.++..+|+...... .+ +.++++++++|++
T Consensus 145 -----------------~~~~-~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~--------~~--~~l~~~v~~~l~~ 196 (219)
T PF00308_consen 145 -----------------SGLL-PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE--------RG--IELPEEVIEYLAR 196 (219)
T ss_dssp -----------------TTS--HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH--------TT----S-HHHHHHHHH
T ss_pred -----------------cccC-hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH--------hC--CCCcHHHHHHHHH
Confidence 1133 788888854 7778889999999997776652 23 3489999999986
Q ss_pred cCCCCCCccchhHHHHHHH
Q psy1308 534 GYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 534 ~~~~~~GaR~L~~~i~~~i 552 (607)
. .+.++|+|...+.+..
T Consensus 197 ~--~~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 197 R--FRRDVRELEGALNRLD 213 (219)
T ss_dssp H--TTSSHHHHHHHHHHHH
T ss_pred h--hcCCHHHHHHHHHHHH
Confidence 3 3567899998888754
No 273
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.65 E-value=9.9e-08 Score=94.66 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=64.7
Q ss_pred CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCccccc
Q psy1308 371 NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQ 450 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (607)
+||+|+||++.++.+...+|-+++|.. --.++||+||.|-..+.. ++..
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~------------~sPiiIlATNRg~~~irG-------------------t~~~ 327 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE------------LSPIIILATNRGITKIRG-------------------TDII 327 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST------------T--EEEEEES-SEEE-BT-------------------TS-E
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC------------CCcEEEEecCceeeeccC-------------------ccCc
Confidence 589999999999999999999999843 235799999966543311 0000
Q ss_pred CCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHH
Q psy1308 451 GSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETI 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~ 530 (607)
..|--+.+|+.|+ -+|...|++.+|+.+|+..... +. .+.++++|+++
T Consensus 328 ---------------------sphGiP~DlLDRl-lII~t~py~~~ei~~Il~iR~~-------~E---~v~i~~~al~~ 375 (398)
T PF06068_consen 328 ---------------------SPHGIPLDLLDRL-LIIRTKPYSEEEIKQILKIRAK-------EE---DVEISEDALDL 375 (398)
T ss_dssp ---------------------EETT--HHHHTTE-EEEEE----HHHHHHHHHHHHH-------HC---T--B-HHHHHH
T ss_pred ---------------------CCCCCCcchHhhc-EEEECCCCCHHHHHHHHHhhhh-------hh---cCcCCHHHHHH
Confidence 0111138999999 7889999999999999775543 22 57889999999
Q ss_pred HHc
Q psy1308 531 LAD 533 (607)
Q Consensus 531 L~~ 533 (607)
|.+
T Consensus 376 L~~ 378 (398)
T PF06068_consen 376 LTK 378 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 274
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.61 E-value=4.6e-07 Score=95.83 Aligned_cols=174 Identities=17% Similarity=0.315 Sum_probs=107.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
+++++|++|+|||.|+++++..+.... ...+..+++..+. ..+...-. ......+...++ ....+|+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~-----~~~~~~~~----~~~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-----NDLVDSMK----EGKLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-----HHHHHHHh----cccHHHHHHHHH-hcCCEEEEe
Confidence 689999999999999999998875421 1234444443321 12211000 001112222222 235699999
Q ss_pred cCCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 378 EVDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 378 Eiek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
|++.+. ...|..|+..+..-. + .+..+|+||+.....+..
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~--~--------~~k~iIitsd~~p~~l~~---------------------------- 243 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELH--D--------SGKQIVICSDREPQKLSE---------------------------- 243 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHH--H--------cCCeEEEECCCCHHHHHH----------------------------
Confidence 999763 345666776664211 1 122477777755554422
Q ss_pred hhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 456 VTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
+. +.+.+|+. .++.+.|++.++...|++..+.. . .+.++++++++|++
T Consensus 244 -------------------l~-~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~-------~---~~~l~~ev~~~Ia~ 293 (440)
T PRK14088 244 -------------------FQ-DRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI-------E---HGELPEEVLNFVAE 293 (440)
T ss_pred -------------------HH-HHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh-------c---CCCCCHHHHHHHHh
Confidence 11 55666663 47788999999999998766541 1 35689999999985
Q ss_pred cCCCCCCccchhHHHHHHH
Q psy1308 534 GYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 534 ~~~~~~GaR~L~~~i~~~i 552 (607)
...+++|.|...+.+..
T Consensus 294 --~~~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 294 --NVDDNLRRLRGAIIKLL 310 (440)
T ss_pred --ccccCHHHHHHHHHHHH
Confidence 23578999999998764
No 275
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=2.3e-07 Score=94.51 Aligned_cols=130 Identities=16% Similarity=0.267 Sum_probs=79.1
Q ss_pred HhHhhh-hHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHh
Q psy1308 267 KDRIVG-QESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345 (607)
Q Consensus 267 ~~~i~G-q~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ 345 (607)
+..++| |+.+++.+...+..... |-.++|+||+|+||+.+|+.+++.+...+..+-. -|..- .....
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l-------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~--~cg~C---~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRL-------SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE--PCGTC---TNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-------CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CCCcC---HHHHH
Confidence 345777 88899988888764432 3367999999999999999999998643211100 01000 01111
Q ss_pred hh-cCCCC--CccCC---C-CchhhHHH---h----hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 346 LI-GAPPG--YLGHD---D-GGQLTKRL---K----KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 346 ll-g~~~g--~~g~~---~-~~~l~~~~---~----~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
+. |..|. ++..+ - ..++.+.+ . .+++-|++|||+|+++.+.++.||+.+|+. ..+
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-----------p~~ 140 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-----------SGG 140 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-----------CCC
Confidence 11 11111 01000 0 01222222 2 123569999999999999999999999963 257
Q ss_pred eEEEEecC
Q psy1308 412 AIFVMTSN 419 (607)
Q Consensus 412 ~~iI~tsn 419 (607)
++||++|+
T Consensus 141 ~~~Il~t~ 148 (329)
T PRK08058 141 TTAILLTE 148 (329)
T ss_pred ceEEEEeC
Confidence 78888877
No 276
>KOG0735|consensus
Probab=98.59 E-value=8.9e-07 Score=93.60 Aligned_cols=114 Identities=26% Similarity=0.324 Sum_probs=75.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC---C--CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 269 RIVGQESAINIISAAIKRKENG---W--TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~---~--~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
.+-|..++.+.+.+.+...... + ..-.-+.-++++||||+|||.||-+++...+.+ |+. ..+....
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~----fis-----vKGPElL 738 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR----FIS-----VKGPELL 738 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee----EEE-----ecCHHHH
Confidence 3556666666665555422110 0 001112368999999999999999999765332 433 4556667
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHH-----------HHHHHHHhhcc
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD-----------VLTVLLQLFDE 396 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~-----------~~~~Ll~~~~~ 396 (607)
.+++|..+.. ...+....+.+..||+||||+|.+.|. |++.||.-||.
T Consensus 739 ~KyIGaSEq~-----vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 739 SKYIGASEQN-----VRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG 797 (952)
T ss_pred HHHhcccHHH-----HHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc
Confidence 8888765432 235677777788999999999997553 88899988873
No 277
>KOG3609|consensus
Probab=98.58 E-value=1.7e-07 Score=100.91 Aligned_cols=130 Identities=20% Similarity=0.216 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHcCCHHHHHHHHhcCC---CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHH
Q psy1308 84 SIKDLTLFRAARYGSAKELKTFIENSK---LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAA 160 (607)
Q Consensus 84 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~---~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~ 160 (607)
..+.-....||.+|+...|+..++... .++|+.|.-|+++|++|..+.+.+++++|++++... ..+|.+|+.
T Consensus 23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~ 97 (822)
T KOG3609|consen 23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIA 97 (822)
T ss_pred chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----chHHHHHHH
Confidence 445566889999999999999998642 578999999999999999999999999999987766 238999999
Q ss_pred cCCccHHHHHHhcCCCccccC-----CCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCcc
Q psy1308 161 EKKMNPFEVLLKREDEFNDVL-----NPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVK 218 (607)
Q Consensus 161 ~~~~~~~~~Ll~~g~~~~~~~-----~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~ 218 (607)
.|..+++++++.+-....... +...-..+.|||++||..+|.+|+++||++|+++...
T Consensus 98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P 160 (822)
T KOG3609|consen 98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP 160 (822)
T ss_pred HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence 999999999998755432111 1111234889999999999999999999999887554
No 278
>KOG0506|consensus
Probab=98.58 E-value=4.7e-08 Score=97.47 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=80.2
Q ss_pred hHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhc-CCCCCccCCCCCCCCcchhhh
Q psy1308 154 TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS-GADPTVKDNSGHIPSDYAEDA 232 (607)
Q Consensus 154 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~Tpl~~A~~~ 232 (607)
++++|+..|.+..++-+.-.|.|.+.. |++.+|+||.|+..|+.+++++|++. +.|++.+|.+|+|||+-|..-
T Consensus 509 ~~~~aa~~GD~~alrRf~l~g~D~~~~-----DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F 583 (622)
T KOG0506|consen 509 NVMYAAKNGDLSALRRFALQGMDLETK-----DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF 583 (622)
T ss_pred hhhhhhhcCCHHHHHHHHHhccccccc-----ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence 899999999999999999999988766 66699999999999999999999984 899999999999999999999
Q ss_pred hHHHHHHHHHHhh
Q psy1308 233 NIKQILQKYAEKY 245 (607)
Q Consensus 233 ~~~~~~~~ll~~~ 245 (607)
++.+++++|-+..
T Consensus 584 ~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 584 KHKEVVKLLEEAQ 596 (622)
T ss_pred CcHHHHHHHHHHh
Confidence 9999999887653
No 279
>PRK04132 replication factor C small subunit; Provisional
Probab=98.56 E-value=5.6e-07 Score=100.47 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=113.4
Q ss_pred eeeeec--cCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEE
Q psy1308 299 VFLFLG--SSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G--~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~ 375 (607)
..+..| |++.|||.+|+++++.+++.+ ...++.+|.|...+-..+..++.....+.. +...++-|++
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~----------~~~~~~KVvI 635 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP----------IGGASFKIIF 635 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC----------cCCCCCEEEE
Confidence 455567 899999999999999986642 346899999987666666555531100000 0012356999
Q ss_pred EecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 376 FDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 376 lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
|||+|+++++.|+.|++.+|+. ..+++||+++|-...
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep-----------~~~~~FILi~N~~~k-------------------------------- 672 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMF-----------SSNVRFILSCNYSSK-------------------------------- 672 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCC-----------CCCeEEEEEeCChhh--------------------------------
Confidence 9999999999999999999952 257889999882111
Q ss_pred hhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccC
Q psy1308 456 VTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGY 535 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~ 535 (607)
.. |.+.+|+ .++.|.|++.+++...+..... ..+ +.++++++..|+.
T Consensus 673 -------------------Ii-~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~--------~Eg--i~i~~e~L~~Ia~-- 719 (846)
T PRK04132 673 -------------------II-EPIQSRC-AIFRFRPLRDEDIAKRLRYIAE--------NEG--LELTEEGLQAILY-- 719 (846)
T ss_pred -------------------Cc-hHHhhhc-eEEeCCCCCHHHHHHHHHHHHH--------hcC--CCCCHHHHHHHHH--
Confidence 11 6788888 6789999999988877554332 113 4467888888874
Q ss_pred CCCCCccchhHHHHH
Q psy1308 536 DVHYGARSIKHEVER 550 (607)
Q Consensus 536 ~~~~GaR~L~~~i~~ 550 (607)
...+..|..-+.++.
T Consensus 720 ~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 720 IAEGDMRRAINILQA 734 (846)
T ss_pred HcCCCHHHHHHHHHH
Confidence 223455555555543
No 280
>KOG0731|consensus
Probab=98.56 E-value=5.7e-07 Score=97.59 Aligned_cols=129 Identities=26% Similarity=0.342 Sum_probs=84.7
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCC----CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGW----TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~----~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|.+++.+.+.+.+..-++.. -...-|--++|+||||||||.|||++|-.. .-||+.+.-+++ +
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----gVPF~svSGSEF-----v 381 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSVSGSEF-----V 381 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----CCceeeechHHH-----H
Confidence 468999999999887775432110 011224478999999999999999999654 557888887776 3
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHH---------------HHHHHHHhhccceeecCCCcEEe
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD---------------VLTVLLQLFDEGRLTDGKGKTIE 408 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~---------------~~~~Ll~~~~~~~~~~~~g~~~~ 408 (607)
..+.|. |......+....+..-.+++|+||||..... .++.||-=|| |....
T Consensus 382 E~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD--------gf~~~ 448 (774)
T KOG0731|consen 382 EMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD--------GFETS 448 (774)
T ss_pred HHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc--------CCcCC
Confidence 333331 1122345666666677899999999875322 3444444443 22222
Q ss_pred cCceEEEEecC
Q psy1308 409 CKDAIFVMTSN 419 (607)
Q Consensus 409 ~~~~~iI~tsn 419 (607)
.+++|+++||
T Consensus 449 -~~vi~~a~tn 458 (774)
T KOG0731|consen 449 -KGVIVLAATN 458 (774)
T ss_pred -CcEEEEeccC
Confidence 6789999999
No 281
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.55 E-value=1.6e-06 Score=99.17 Aligned_cols=179 Identities=21% Similarity=0.291 Sum_probs=111.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|.+..++.+...+.+.. +-..+++||||+|||.+++.++..+...+ ...++.+|++..
T Consensus 180 ~~igr~~ei~~~~~~L~r~~--------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l----- 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT--------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL----- 246 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc--------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH-----
Confidence 37899999999988876542 22567999999999999999998864321 234666665432
Q ss_pred hHhhhcCCCCCccCCCCch---hhHHHhhCCCeEEEEecCCccC--------HHHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 343 VAKLIGAPPGYLGHDDGGQ---LTKRLKKCPNAVVLFDEVDKAH--------PDVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~---l~~~~~~~~~~vl~lDEiek~~--------~~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
+. ...|.|. -... +.+.+......|||||||+.+. .++.+.|...+..| +
T Consensus 247 ----~a-g~~~~ge-~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-------------~ 307 (821)
T CHL00095 247 ----LA-GTKYRGE-FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-------------E 307 (821)
T ss_pred ----hc-cCCCccH-HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-------------C
Confidence 21 1223331 1112 2333344567899999997543 24667777777654 3
Q ss_pred eEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeec
Q psy1308 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491 (607)
Q Consensus 412 ~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~ 491 (607)
..+|.+|+.. +..++. + - .|.|..|+.. +...
T Consensus 308 l~~IgaTt~~--ey~~~i----------------------------------e----------~-D~aL~rRf~~-I~v~ 339 (821)
T CHL00095 308 LQCIGATTLD--EYRKHI----------------------------------E----------K-DPALERRFQP-VYVG 339 (821)
T ss_pred cEEEEeCCHH--HHHHHH----------------------------------h----------c-CHHHHhcceE-EecC
Confidence 5688888821 110000 0 0 2677788854 5666
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
+++.++...|++.....+.+ .+++. ++++++..++.
T Consensus 340 ep~~~e~~aILr~l~~~~e~----~~~v~--i~deal~~i~~ 375 (821)
T CHL00095 340 EPSVEETIEILFGLRSRYEK----HHNLS--ISDKALEAAAK 375 (821)
T ss_pred CCCHHHHHHHHHHHHHHHHH----HcCCC--CCHHHHHHHHH
Confidence 67888888887665544332 23333 78888887753
No 282
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.53 E-value=1.6e-06 Score=98.41 Aligned_cols=126 Identities=25% Similarity=0.324 Sum_probs=77.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC-----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 269 RIVGQESAINIISAAIKRKENG-----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~-----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
.+.|.+..++.+...+...... ...-..|..++|+||+|+|||.+++.++..+.. +++.++++.+..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~----~~i~i~~~~i~~---- 250 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA----YFISINGPEIMS---- 250 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC----eEEEEecHHHhc----
Confidence 4778888888877666432100 001123447899999999999999999988743 477777654321
Q ss_pred HhhhcCCCCCccCCC--CchhhHHHhhCCCeEEEEecCCccC-----------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 344 AKLIGAPPGYLGHDD--GGQLTKRLKKCPNAVVLFDEVDKAH-----------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 344 ~~llg~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEiek~~-----------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
+ |.|... -..+.........++|||||||.+. ..+++.|+++++.-. ...
T Consensus 251 -~-------~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~---------~~~ 313 (733)
T TIGR01243 251 -K-------YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK---------GRG 313 (733)
T ss_pred -c-------cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc---------cCC
Confidence 1 122110 0112233334456899999998763 346778888886321 123
Q ss_pred ceEEEEecC
Q psy1308 411 DAIFVMTSN 419 (607)
Q Consensus 411 ~~~iI~tsn 419 (607)
++++|.+||
T Consensus 314 ~vivI~atn 322 (733)
T TIGR01243 314 RVIVIGATN 322 (733)
T ss_pred CEEEEeecC
Confidence 567888888
No 283
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.53 E-value=1.5e-06 Score=96.49 Aligned_cols=136 Identities=21% Similarity=0.314 Sum_probs=87.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
|..++++||+|+|||.+++.++..+. .+|+.++.+.+.. .+.|... ..-..+....+....+||||
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~----~~f~~is~~~~~~-----~~~g~~~-----~~~~~~f~~a~~~~P~IifI 250 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAK----VPFFTISGSDFVE-----MFVGVGA-----SRVRDMFEQAKKAAPCIIFI 250 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC----CCEEEEehHHhHH-----hhhcccH-----HHHHHHHHHHHhcCCcEEEe
Confidence 34699999999999999999998764 3588888766532 2222111 01112333445556789999
Q ss_pred ecCCccCH--------------HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccC
Q psy1308 377 DEVDKAHP--------------DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKR 442 (607)
Q Consensus 377 DEiek~~~--------------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~ 442 (607)
||||.+.. .+++.||..++. +. ....+++|+|||... .
T Consensus 251 DEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg--~~-------~~~~vivIaaTN~p~-~------------------ 302 (644)
T PRK10733 251 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG--FE-------GNEGIIVIAATNRPD-V------------------ 302 (644)
T ss_pred hhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc--cc-------CCCCeeEEEecCChh-h------------------
Confidence 99998732 245556655552 11 124678999999321 1
Q ss_pred CCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--ccccceeeeccCCHHHHHHHHHHHHH
Q psy1308 443 TPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEIVYFLPFSKSELHTLVCRELN 507 (607)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~iv~f~pl~~~~~~~i~~~~l~ 507 (607)
+. |.+. +|||..+.+.+++.++..+|+...+.
T Consensus 303 ------------------------lD---------~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 303 ------------------------LD---------PALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred ------------------------cC---------HHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 11 3333 48888898888899999999777664
No 284
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.52 E-value=8.8e-07 Score=89.30 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=86.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch-----
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE----- 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~----- 342 (607)
..++||+.....+....-...- ..+|+.|+.|+|||.++|+|+..|....---=.+++|.-......
T Consensus 17 ~aivGqd~lk~aL~l~av~P~i--------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~ 88 (423)
T COG1239 17 TAIVGQDPLKLALGLNAVDPQI--------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECR 88 (423)
T ss_pred hhhcCchHHHHHHhhhhccccc--------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHH
Confidence 3578888777765433111111 168899999999999999999998542100000111111111000
Q ss_pred --------------hHhhhcCCCCCc-----cC---------CCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhh
Q psy1308 343 --------------VAKLIGAPPGYL-----GH---------DDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLF 394 (607)
Q Consensus 343 --------------~~~llg~~~g~~-----g~---------~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~ 394 (607)
-..+.+-|-|-+ |. +...--.+++.++++||+++||+..++..+|+.||.++
T Consensus 89 ~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~a 168 (423)
T COG1239 89 AKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVA 168 (423)
T ss_pred hhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHH
Confidence 001111111111 10 01111245677889999999999999999999999999
Q ss_pred ccc-eeecCCCcEEe-cCceEEEEecC
Q psy1308 395 DEG-RLTDGKGKTIE-CKDAIFVMTSN 419 (607)
Q Consensus 395 ~~~-~~~~~~g~~~~-~~~~~iI~tsn 419 (607)
++| ......|..+. ..++++|.|.|
T Consensus 169 aeG~n~vereGisi~hpa~fvligTmN 195 (423)
T COG1239 169 AEGVNDVEREGISIRHPARFLLIGTMN 195 (423)
T ss_pred HhCCceeeeCceeeccCccEEEEeecC
Confidence 998 34444566554 47788889988
No 285
>KOG0818|consensus
Probab=98.52 E-value=3.6e-07 Score=91.72 Aligned_cols=82 Identities=28% Similarity=0.350 Sum_probs=45.6
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--chHHHHHHcCCccH
Q psy1308 90 LFRAARYGSAKELKTFIENSKLDVNMRHPL-GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF--NTVHRTAAEKKMNP 166 (607)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~--~~l~~A~~~~~~~~ 166 (607)
||..++.|++++.-.||..| +++|..+.. |.||||.|++.|+..-+++|+=+|||++..|+. ||+.+|-..||-++
T Consensus 137 LhasvRt~nlet~LRll~lG-A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l 215 (669)
T KOG0818|consen 137 LHSSVRTGNLETCLRLLSLG-AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL 215 (669)
T ss_pred HHHHhhcccHHHHHHHHHcc-cccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence 55666666666666666655 565555432 556666666666666666666666666655442 25555555555444
Q ss_pred HHHHHh
Q psy1308 167 FEVLLK 172 (607)
Q Consensus 167 ~~~Ll~ 172 (607)
.+-|++
T Consensus 216 aeRl~e 221 (669)
T KOG0818|consen 216 AERLVE 221 (669)
T ss_pred HHHHHH
Confidence 444443
No 286
>KOG0783|consensus
Probab=98.52 E-value=5.2e-08 Score=103.25 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=74.7
Q ss_pred hhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCc--hH
Q psy1308 79 LLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPL-GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN--TV 155 (607)
Q Consensus 79 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~--~l 155 (607)
.+..|..|+|+||+|+..|...++++||++| +|++.+|.. |+||||-|...|+++|+-+||.+|+....+|..| ||
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhG-idv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl 123 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHG-IDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL 123 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcC-ceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence 4788999999999999999999999999998 999999975 9999999999999999999999999998888766 88
Q ss_pred HHHHH
Q psy1308 156 HRTAA 160 (607)
Q Consensus 156 ~~A~~ 160 (607)
..-++
T Consensus 124 q~~~r 128 (1267)
T KOG0783|consen 124 QFLSR 128 (1267)
T ss_pred HHHhh
Confidence 77666
No 287
>PRK09087 hypothetical protein; Validated
Probab=98.51 E-value=6e-07 Score=86.14 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=96.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.+.++|++|+|||.|++.+++... ...++...+.. . .+.....+.|++|+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~------~~~i~~~~~~~---------------------~---~~~~~~~~~l~iDD 95 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD------ALLIHPNEIGS---------------------D---AANAAAEGPVLIED 95 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC------CEEecHHHcch---------------------H---HHHhhhcCeEEEEC
Confidence 478999999999999998875431 11222211110 0 11111125899999
Q ss_pred CCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhc
Q psy1308 379 VDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTI 458 (607)
Q Consensus 379 iek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
++... ..+..|+.++..-. + ....+|+||+.....+..
T Consensus 96 i~~~~-~~~~~lf~l~n~~~--~--------~g~~ilits~~~p~~~~~------------------------------- 133 (226)
T PRK09087 96 IDAGG-FDETGLFHLINSVR--Q--------AGTSLLMTSRLWPSSWNV------------------------------- 133 (226)
T ss_pred CCCCC-CCHHHHHHHHHHHH--h--------CCCeEEEECCCChHHhcc-------------------------------
Confidence 99774 33566776664210 1 123477887755444311
Q ss_pred chhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCC
Q psy1308 459 SRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYD 536 (607)
Q Consensus 459 ~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~ 536 (607)
+. |++.+|+. .++.+.|++.+++.+++++.+.. + .+.++++++++|++.++
T Consensus 134 ----------------~~-~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-------~---~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 134 ----------------KL-PDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD-------R---QLYVDPHVVYYLVSRME 186 (226)
T ss_pred ----------------cc-ccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHHHhh
Confidence 11 78888885 57888999999999998877753 1 36789999999986332
Q ss_pred CCCCccchhHHHHHH
Q psy1308 537 VHYGARSIKHEVERQ 551 (607)
Q Consensus 537 ~~~GaR~L~~~i~~~ 551 (607)
...|.+...+.+.
T Consensus 187 --r~~~~l~~~l~~L 199 (226)
T PRK09087 187 --RSLFAAQTIVDRL 199 (226)
T ss_pred --hhHHHHHHHHHHH
Confidence 5566666655443
No 288
>KOG0743|consensus
Probab=98.50 E-value=1.1e-06 Score=89.23 Aligned_cols=152 Identities=20% Similarity=0.302 Sum_probs=103.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
-.||+||||||||.++.++|.++.-+ ..-++.+....+.+..+|+- ...+.+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~yd----IydLeLt~v~~n~dLr~LL~------------------~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYD----IYDLELTEVKLDSDLRHLLL------------------ATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCc----eEEeeeccccCcHHHHHHHH------------------hCCCCcEEEEee
Confidence 68999999999999999999998544 77788888877766666653 233478999999
Q ss_pred CCcc------------------CHHHHHHHHHhhccceeecCCCcEEec-CceEEEEecCcchHHHHHHHhhhhhccccc
Q psy1308 379 VDKA------------------HPDVLTVLLQLFDEGRLTDGKGKTIEC-KDAIFVMTSNLASNEIAQHALQLRKEGEEF 439 (607)
Q Consensus 379 iek~------------------~~~~~~~Ll~~~~~~~~~~~~g~~~~~-~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~ 439 (607)
||-. .+-.+.-||.++|.-+ -.+ ..-|||||||--
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw--------Sscg~ERIivFTTNh~------------------ 348 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW--------SSCGDERIIVFTTNHK------------------ 348 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcccc--------ccCCCceEEEEecCCh------------------
Confidence 9865 1124456777776222 122 245789999921
Q ss_pred ccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccceeeeccCCHHHHHHHHHHHHHH-----HHHH
Q psy1308 440 SKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINEIVYFLPFSKSELHTLVCRELNF-----WAKK 512 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~iv~f~pl~~~~~~~i~~~~l~~-----~~~~ 512 (607)
..+- |.|+. |+|-.|.+.--+.+.+..++..++.- +...
T Consensus 349 ---------------------------------EkLD-PALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e 394 (457)
T KOG0743|consen 349 ---------------------------------EKLD-PALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE 394 (457)
T ss_pred ---------------------------------hhcC-HhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH
Confidence 1122 66665 99988888778999999999988852 3333
Q ss_pred HhhcCCcEEEeCHh-HHHHHHc
Q psy1308 513 ALDKHNINIVWDID-VETILAD 533 (607)
Q Consensus 513 ~~~~~~i~l~~~~~-a~~~L~~ 533 (607)
+.+ .--..+++|+ +.+.|+.
T Consensus 395 ie~-l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 395 IER-LIEETEVTPAQVAEELMK 415 (457)
T ss_pred HHH-HhhcCccCHHHHHHHHhh
Confidence 322 1223456665 4556664
No 289
>KOG0782|consensus
Probab=98.48 E-value=1.8e-07 Score=95.00 Aligned_cols=121 Identities=25% Similarity=0.308 Sum_probs=94.8
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHH
Q psy1308 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEV 169 (607)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~ 169 (607)
+..|+..+++--++.+-..| .++-.++.+.+|.||+|+..|+-++|+|++++|..-
T Consensus 870 il~av~~~D~~klqE~h~~g-g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e----------------------- 925 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNG-GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE----------------------- 925 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcC-CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH-----------------------
Confidence 56677777766666666666 567777778888888888888888888888876521
Q ss_pred HHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 170 LLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 170 Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
|| +. .|..|.|+||.|+..++..++++|++.||.....|..|.||-.-|-+.|..++..+|-.+.
T Consensus 926 ll------d~-----~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq 990 (1004)
T KOG0782|consen 926 LL------DM-----ADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ 990 (1004)
T ss_pred HH------HH-----HhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence 00 11 1234999999999999999999999999999999999999999999999999998886553
No 290
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.47 E-value=5.3e-06 Score=78.44 Aligned_cols=180 Identities=17% Similarity=0.225 Sum_probs=106.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++|-+...+.+.........+.+ ..++|++|+.|||||.++|++...+..+ .=.++.+.-.....
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~p----annvLL~G~rGtGKSSlVkall~~y~~~-GLRlIev~k~~L~~-------- 93 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLP----ANNVLLWGARGTGKSSLVKALLNEYADQ-GLRLIEVSKEDLGD-------- 93 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCC----CcceEEecCCCCCHHHHHHHHHHHHhhc-CceEEEECHHHhcc--------
Confidence 3578888888888777777666643 3379999999999999999999887654 22233332222211
Q ss_pred cCCCCCccCCCCchhhHHHhhCC-CeEEEEecCCc-cCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKKCP-NAVVLFDEVDK-AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~~~-~~vl~lDEiek-~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
-..+...++..| .=|||+|+..= ....-...|..++|.| +. ....|++|.+|||.-. +
T Consensus 94 -----------l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg-le------~~P~NvliyATSNRRH--L 153 (249)
T PF05673_consen 94 -----------LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGG-LE------ARPDNVLIYATSNRRH--L 153 (249)
T ss_pred -----------HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCc-cc------cCCCcEEEEEecchhh--c
Confidence 113444555454 45888887532 1233446677777633 22 2358999999999321 1
Q ss_pred HHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHH
Q psy1308 426 AQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRE 505 (607)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~ 505 (607)
+.... .+... .... ++.. .+.+ ... -.|..||.-.+.|.|++.++..+|+...
T Consensus 154 v~E~~--------------~d~~~-~~~~--eih~---~d~~----eEk---lSLsDRFGL~l~F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 154 VPESF--------------SDRED-IQDD--EIHP---SDTI----EEK---LSLSDRFGLWLSFYPPDQEEYLAIVRHY 206 (249)
T ss_pred cchhh--------------hhccC-CCcc--ccCc---chHH----HHH---HhHHHhCCcEEEecCCCHHHHHHHHHHH
Confidence 11000 00000 0000 0000 1111 111 3467788889999999999999999888
Q ss_pred HH
Q psy1308 506 LN 507 (607)
Q Consensus 506 l~ 507 (607)
+.
T Consensus 207 ~~ 208 (249)
T PF05673_consen 207 AE 208 (249)
T ss_pred HH
Confidence 85
No 291
>KOG1942|consensus
Probab=98.45 E-value=2.5e-06 Score=80.99 Aligned_cols=117 Identities=19% Similarity=0.287 Sum_probs=82.6
Q ss_pred CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCccccc
Q psy1308 371 NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQ 450 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (607)
.||+|+||++.++-+....|-+.++.. --.++||+||.|-..+.. +++.
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~------------iaPivifAsNrG~~~irG-------------------t~d~ 345 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESP------------IAPIVIFASNRGMCTIRG-------------------TEDI 345 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCC------------CCceEEEecCCcceeecC-------------------CcCC
Confidence 589999999999999999999999832 235799999977655421 0000
Q ss_pred CCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHH
Q psy1308 451 GSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETI 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~ 530 (607)
...|--+++++.|+ .||...|++.+++++|+..... .. .+.++++++++
T Consensus 346 --------------------~sPhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~-------~E---~l~~~e~a~~~ 394 (456)
T KOG1942|consen 346 --------------------LSPHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQ-------VE---GLQVEEEALDL 394 (456)
T ss_pred --------------------CCCCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHh-------hh---cceecHHHHHH
Confidence 01111149999999 6788899999999999875443 12 57889999999
Q ss_pred HHccCCCCCCccchhHHHHHHHHHH
Q psy1308 531 LADGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 531 L~~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
|.. -+--+.||-.++ +..|
T Consensus 395 l~~----~gt~tsLRy~vq--Ll~p 413 (456)
T KOG1942|consen 395 LAE----IGTSTSLRYAVQ--LLTP 413 (456)
T ss_pred HHh----hccchhHHHHHH--hcCH
Confidence 985 223456776665 4444
No 292
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.45 E-value=1.3e-06 Score=93.92 Aligned_cols=173 Identities=14% Similarity=0.263 Sum_probs=108.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
.++|+|++|+|||.|+.+++..+.... ......+.+..+.... ...+.. .....+.+.++. ..+|+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el-~~al~~--------~~~~~f~~~y~~--~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF-INSIRD--------GKGDSFRRRYRE--MDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH-HHHHHh--------ccHHHHHHHhhc--CCEEEEe
Confidence 488999999999999999999875321 2233444444332111 111110 011122233333 4799999
Q ss_pred cCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 378 EVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 378 Eiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
||+.+.. ..+..|+.+++.-. + .+.-+|+||+.....+..
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~--e--------~gk~IIITSd~~P~eL~~---------------------------- 426 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLH--N--------ANKQIVLSSDRPPKQLVT---------------------------- 426 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHH--h--------cCCCEEEecCCChHhhhh----------------------------
Confidence 9998743 45677777776321 1 122377798866555421
Q ss_pred hhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 456 VTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
+. +.|.+||. .++...|++.+....|++..... + .+.++++++++|+.
T Consensus 427 -------------------l~-~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~-------r---~l~l~~eVi~yLa~ 476 (617)
T PRK14086 427 -------------------LE-DRLRNRFEWGLITDVQPPELETRIAILRKKAVQ-------E---QLNAPPEVLEFIAS 476 (617)
T ss_pred -------------------cc-HHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh-------c---CCCCCHHHHHHHHH
Confidence 11 66777774 46777888999999998765432 1 36789999999986
Q ss_pred cCCCCCCccchhHHHHHHH
Q psy1308 534 GYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 534 ~~~~~~GaR~L~~~i~~~i 552 (607)
.+ ..++|+|...|.+..
T Consensus 477 r~--~rnvR~LegaL~rL~ 493 (617)
T PRK14086 477 RI--SRNIRELEGALIRVT 493 (617)
T ss_pred hc--cCCHHHHHHHHHHHH
Confidence 33 567899999998754
No 293
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.45 E-value=1.4e-06 Score=99.59 Aligned_cols=120 Identities=22% Similarity=0.330 Sum_probs=77.4
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..++.+...+.+... -..+|+||+|+|||.+++.++..+.... ...++.++++....
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~--------~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a--- 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTK--------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA--- 247 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCc--------CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh---
Confidence 488999998888887766532 1467999999999999999999874321 23455555554311
Q ss_pred hHhhhcCCCCCccCCCCchhhHHH---h-hCCCeEEEEecCCccCH--------HHHHHHHHhhccceeecCCCcEEecC
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRL---K-KCPNAVVLFDEVDKAHP--------DVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~---~-~~~~~vl~lDEiek~~~--------~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
...|.|. -...+...+ . .....||||||++.+.. +.++.|...+..|
T Consensus 248 -------g~~~~g~-~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g------------- 306 (857)
T PRK10865 248 -------GAKYRGE-FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG------------- 306 (857)
T ss_pred -------ccchhhh-hHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-------------
Confidence 0112221 111222222 2 23468999999998753 3678888887655
Q ss_pred ceEEEEecCc
Q psy1308 411 DAIFVMTSNL 420 (607)
Q Consensus 411 ~~~iI~tsn~ 420 (607)
..++|.+|+.
T Consensus 307 ~l~~IgaTt~ 316 (857)
T PRK10865 307 ELHCVGATTL 316 (857)
T ss_pred CCeEEEcCCC
Confidence 3568888883
No 294
>KOG0522|consensus
Probab=98.44 E-value=4.4e-07 Score=92.40 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=71.6
Q ss_pred hHHHHHHcCCccHHHHHHhc--CCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhh
Q psy1308 154 TVHRTAAEKKMNPFEVLLKR--EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED 231 (607)
Q Consensus 154 ~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~ 231 (607)
|+|+++.....+-+..++.. +..++.. |..|+||||+|+..|+...++.|+.+|||+..+|++||+|||-|+.
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~-----D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~ 97 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKVSLVIDRR-----DPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS 97 (560)
T ss_pred ccchhhhccchhhHHHHHhhhhhceeccc-----cCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence 47777777666655443332 2233333 5559999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhHH
Q psy1308 232 ANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 232 ~~~~~~~~~ll~~~~~~~ 249 (607)
.|+.+++..++.+.....
T Consensus 98 ~g~~q~i~~vlr~~~~q~ 115 (560)
T KOG0522|consen 98 TGNEQIITEVLRHLKYQA 115 (560)
T ss_pred cCCHHHHHHHHHHhHHHH
Confidence 999999988887765433
No 295
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.43 E-value=2.3e-06 Score=87.66 Aligned_cols=121 Identities=26% Similarity=0.363 Sum_probs=76.3
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcC--------------------Cce
Q psy1308 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK--------------------EAF 329 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~--------------------~~~ 329 (607)
++++...+..+.......... |-.++|.||+|+|||.+|..+++.+..... ..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~------~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRL------PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred cccchhHHHHHHHHHHhcCCC------CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 445555665555554433211 225999999999999999999999875321 233
Q ss_pred EEeecccccccchhHhhhcCCCCCccCCCCchhhHHHh----hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCc
Q psy1308 330 IRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLK----KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGK 405 (607)
Q Consensus 330 ~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~----~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~ 405 (607)
..++-+.........+. -..+..... ..+.-|+++||+|+++++.++.|++.+++.
T Consensus 77 lel~~s~~~~~~i~~~~------------vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep-------- 136 (325)
T COG0470 77 LELNPSDLRKIDIIVEQ------------VRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------- 136 (325)
T ss_pred EEecccccCCCcchHHH------------HHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC--------
Confidence 44443333221100000 001111111 134679999999999999999999999954
Q ss_pred EEecCceEEEEecC
Q psy1308 406 TIECKDAIFVMTSN 419 (607)
Q Consensus 406 ~~~~~~~~iI~tsn 419 (607)
..+++||+++|
T Consensus 137 ---~~~~~~il~~n 147 (325)
T COG0470 137 ---PKNTRFILITN 147 (325)
T ss_pred ---CCCeEEEEEcC
Confidence 37889999999
No 296
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=1.1e-06 Score=88.15 Aligned_cols=137 Identities=17% Similarity=0.306 Sum_probs=86.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh-cCCCC----------CccCCCCchhhHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI-GAPPG----------YLGHDDGGQLTKRLK 367 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll-g~~~g----------~~g~~~~~~l~~~~~ 367 (607)
.++|.||.|+||+.+|+.+++.+.-.+..+-. -|..- ..+..+. |..|. .++-++-..+...+.
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~--~Cg~C---~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ--PCGQC---HSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCCCC---HHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999998653211100 11110 1111111 11111 122222222333333
Q ss_pred hC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCC
Q psy1308 368 KC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRT 443 (607)
Q Consensus 368 ~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~ 443 (607)
.. .+-|++||++|+++...++.||+.+|+. ..+++||++|+....
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-----------p~~~~fiL~t~~~~~-------------------- 149 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP-----------RPNTYFLLQADLSAA-------------------- 149 (325)
T ss_pred hccccCCceEEEEechhhhCHHHHHHHHHHhcCC-----------CCCeEEEEEECChHh--------------------
Confidence 33 3579999999999999999999999964 367889988872111
Q ss_pred CCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHH
Q psy1308 444 PSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCR 504 (607)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~ 504 (607)
.. |-..+|. ..+.|.|++.+++.+.+..
T Consensus 150 -------------------------------ll-pTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 150 -------------------------------LL-PTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred -------------------------------Cc-hHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 11 6677888 5678899988888766654
No 297
>PRK06620 hypothetical protein; Validated
Probab=98.41 E-value=5.8e-06 Score=78.65 Aligned_cols=61 Identities=10% Similarity=0.136 Sum_probs=46.7
Q ss_pred hhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHH
Q psy1308 478 DEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVER 550 (607)
Q Consensus 478 ~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~ 550 (607)
|++.+|+. .++.+.|++.+++..++.+.... + .+.++++++++|++. .+..+|.+.+.+++
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-------~---~l~l~~ev~~~L~~~--~~~d~r~l~~~l~~ 192 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-------S---SVTISRQIIDFLLVN--LPREYSKIIEILEN 192 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-------c---CCCCCHHHHHHHHHH--ccCCHHHHHHHHHH
Confidence 67778884 26888999999988887665542 1 367899999999852 36778999999987
No 298
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.41 E-value=1.5e-05 Score=79.27 Aligned_cols=188 Identities=18% Similarity=0.223 Sum_probs=104.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee--cccccccc---hhHhhhcCCCCCccCCCCc---hhhH----HH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD--MSEYQEKH---EVAKLIGAPPGYLGHDDGG---QLTK----RL 366 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~--~a~~~~~~---~~~~llg~~~g~~g~~~~~---~l~~----~~ 366 (607)
.++++|++|+|||.+++.++..+... ...... ........ .+...+|.+.. +..... .+.. ..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~---~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE---RVVAAKLVNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQF 119 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC---CeEEeeeeCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999877532 122111 11121111 12233443221 111111 1211 12
Q ss_pred hhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCc
Q psy1308 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSI 446 (607)
Q Consensus 367 ~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~ 446 (607)
......++++||++.+++..++.|..+.+-. ... ...+.|++++.........
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~---~~~-----~~~~~vvl~g~~~~~~~l~------------------- 172 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQ---TDN-----AKLLQIFLVGQPEFRETLQ------------------- 172 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcc---cCC-----CCeEEEEEcCCHHHHHHHc-------------------
Confidence 2445679999999999998887776554421 111 1233456665421111000
Q ss_pred ccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHh
Q psy1308 447 SKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDID 526 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~ 526 (607)
...+ ..+.+|+...+.+.|++.+++.+++...+.... ..-...++++
T Consensus 173 -------------------------~~~~--~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g------~~~~~~~~~~ 219 (269)
T TIGR03015 173 -------------------------SPQL--QQLRQRIIASCHLGPLDREETREYIEHRLERAG------NRDAPVFSEG 219 (269)
T ss_pred -------------------------Cchh--HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcC------CCCCCCcCHH
Confidence 0001 346778877888999999999998887775321 1113457999
Q ss_pred HHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 527 VETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 527 a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
+++.|.+ +. .+..|.+.......+.
T Consensus 220 ~~~~i~~-~s-~G~p~~i~~l~~~~~~ 244 (269)
T TIGR03015 220 AFDAIHR-FS-RGIPRLINILCDRLLL 244 (269)
T ss_pred HHHHHHH-Hc-CCcccHHHHHHHHHHH
Confidence 9999974 21 2335656655554444
No 299
>KOG0705|consensus
Probab=98.40 E-value=3.3e-07 Score=93.66 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=80.7
Q ss_pred hHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh
Q psy1308 154 TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233 (607)
Q Consensus 154 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~ 233 (607)
-|..|+....+..+-+||.+|..... +....+.+|+|+||+||..|++.+.++|+=+|+|+.++|..|+|||.||...|
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~-~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEV-NETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhh-hccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence 46778888888899999999876443 22334566999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy1308 234 IKQILQKYAEKYAD 247 (607)
Q Consensus 234 ~~~~~~~ll~~~~~ 247 (607)
..+++..|+..|..
T Consensus 706 sqec~d~llq~gcp 719 (749)
T KOG0705|consen 706 SQECIDVLLQYGCP 719 (749)
T ss_pred cHHHHHHHHHcCCC
Confidence 99999999988754
No 300
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.38 E-value=3.3e-06 Score=96.89 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=104.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..++.+...+.+... ...+++||+|+|||.+++.++..+.... ...++.++++..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~--------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l----- 240 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTK--------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL----- 240 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCC--------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH-----
Confidence 388999998888887765431 2466899999999999999998764321 223445554332
Q ss_pred hHhhhcCCCCCccCCCCchhhHHH---hh-CCCeEEEEecCCccC--------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRL---KK-CPNAVVLFDEVDKAH--------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~---~~-~~~~vl~lDEiek~~--------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
+ ....|.|. -...+...+ .. ....|||||||+.+. .+..+.|...+..|
T Consensus 241 ----~-a~~~~~g~-~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g------------- 301 (852)
T TIGR03346 241 ----I-AGAKYRGE-FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG------------- 301 (852)
T ss_pred ----h-hcchhhhh-HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-------------
Confidence 1 01123321 111223333 22 247899999999774 24566666666543
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
...+|.+|+... ...+ + .. .|.|.+||..+. .
T Consensus 302 ~i~~IgaTt~~e--~r~~-~-------------------------------------------~~-d~al~rRf~~i~-v 333 (852)
T TIGR03346 302 ELHCIGATTLDE--YRKY-I-------------------------------------------EK-DAALERRFQPVF-V 333 (852)
T ss_pred ceEEEEeCcHHH--HHHH-h-------------------------------------------hc-CHHHHhcCCEEE-e
Confidence 456888888311 1000 0 01 288888997654 4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
.+++.++...|+..... ++...+ .+.++++++...+
T Consensus 334 ~~p~~~~~~~iL~~~~~----~~e~~~--~v~~~d~~i~~~~ 369 (852)
T TIGR03346 334 DEPTVEDTISILRGLKE----RYEVHH--GVRITDPAIVAAA 369 (852)
T ss_pred CCCCHHHHHHHHHHHHH----Hhcccc--CCCCCHHHHHHHH
Confidence 45588888888655433 332222 3345666665544
No 301
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=3.1e-06 Score=85.69 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=86.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh-cCCCC-----------CccCCCCchhhHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI-GAPPG-----------YLGHDDGGQLTKRL 366 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll-g~~~g-----------~~g~~~~~~l~~~~ 366 (607)
.++|+||+|+||+.+|+.+|+.+.-.+..+.. -|..- .+...+. |..|. .++-++-..+.+.+
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~--~Cg~C---~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGG--ACGSC---KGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCCCC---HHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999998653211100 11110 1111111 11111 11112222233333
Q ss_pred hhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccC
Q psy1308 367 KKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKR 442 (607)
Q Consensus 367 ~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~ 442 (607)
... ++-|++||++|+++.+.++.||+.+|+- ..+++||++|+....
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-----------p~~~~fiL~t~~~~~------------------- 148 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP-----------SGDTVLLLISHQPSR------------------- 148 (328)
T ss_pred hhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC-----------CCCeEEEEEECChhh-------------------
Confidence 333 3679999999999999999999999963 256788888882211
Q ss_pred CCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHH
Q psy1308 443 TPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRE 505 (607)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~ 505 (607)
+. |-+.+|. ..+.|.|++.+++.+.+...
T Consensus 149 --------------------------------ll-~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 149 --------------------------------LL-PTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred --------------------------------Cc-HHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 22 6778888 45888999988887776543
No 302
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=1.4e-06 Score=87.32 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc----cccchhHhhhc
Q psy1308 273 QESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY----QEKHEVAKLIG 348 (607)
Q Consensus 273 q~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~----~~~~~~~~llg 348 (607)
+..+.+.+...+...+. |-.++|.||.|+||+.+|..+++.+.-....+.- .|.+. .++|--..++.
T Consensus 9 ~~~~~~~l~~~~~~~rl-------~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~--~c~~c~~~~~g~HPD~~~i~ 79 (319)
T PRK08769 9 QQRAYDQTVAALDAGRL-------GHGLLICGPEGLGKRAVALALAEHVLASGPDPAA--AQRTRQLIAAGTHPDLQLVS 79 (319)
T ss_pred HHHHHHHHHHHHHcCCc-------ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC--cchHHHHHhcCCCCCEEEEe
Confidence 45556666655544331 3368999999999999999999988653211110 11110 01111111111
Q ss_pred CCCCCccC--------CCCchhhHHHhhCC----CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEE
Q psy1308 349 APPGYLGH--------DDGGQLTKRLKKCP----NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVM 416 (607)
Q Consensus 349 ~~~g~~g~--------~~~~~l~~~~~~~~----~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ 416 (607)
..|...|. ++-..+.+.+...+ +-|++||++|+++.+..+.||+.+|+- ..+++||+
T Consensus 80 ~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~~~fiL 148 (319)
T PRK08769 80 FIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP-----------SPGRYLWL 148 (319)
T ss_pred cCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC-----------CCCCeEEE
Confidence 01211111 11111222222333 569999999999999999999999963 25778888
Q ss_pred ecC
Q psy1308 417 TSN 419 (607)
Q Consensus 417 tsn 419 (607)
+|+
T Consensus 149 ~~~ 151 (319)
T PRK08769 149 ISA 151 (319)
T ss_pred EEC
Confidence 887
No 303
>KOG0652|consensus
Probab=98.36 E-value=2.6e-06 Score=79.53 Aligned_cols=128 Identities=23% Similarity=0.305 Sum_probs=78.4
Q ss_pred HhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 269 RIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.+-|.+..|+.+.+++.-. ..+.. .|.-++++||||+|||.+||+-|..-+. .|..+ .+.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~---pPKGvLmYGPPGTGKTlmARAcAaqT~a----TFLKL-----AgP 239 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIR---PPKGVLMYGPPGTGKTLMARACAAQTNA----TFLKL-----AGP 239 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCC---CCCceEeeCCCCCcHHHHHHHHHHhccc----hHHHh-----cch
Confidence 4667777777777776422 22222 2447889999999999999998865432 23332 233
Q ss_pred chhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEec
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
..+..++|..... ..+-..+......+++|+||+|.. +.++|...|.++..- +|.. .-
T Consensus 240 QLVQMfIGdGAkL-----VRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL-----DGFs-s~ 308 (424)
T KOG0652|consen 240 QLVQMFIGDGAKL-----VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL-----DGFS-SD 308 (424)
T ss_pred HHHhhhhcchHHH-----HHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh-----cCCC-Cc
Confidence 4455666632111 112233344455789999999864 567999888887621 1221 11
Q ss_pred CceEEEEecC
Q psy1308 410 KDAIFVMTSN 419 (607)
Q Consensus 410 ~~~~iI~tsn 419 (607)
..+-+|.+||
T Consensus 309 ~~vKviAATN 318 (424)
T KOG0652|consen 309 DRVKVIAATN 318 (424)
T ss_pred cceEEEeecc
Confidence 3456899998
No 304
>KOG0726|consensus
Probab=98.34 E-value=1.3e-06 Score=82.91 Aligned_cols=127 Identities=27% Similarity=0.402 Sum_probs=82.0
Q ss_pred hhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc
Q psy1308 270 IVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~ 341 (607)
+-|.+..++.+.+.+.-. ..|.. .|--++++|++|+|||.||+++|..- .-.|.++- ++.
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGik---pPKGVIlyG~PGTGKTLLAKAVANqT----SATFlRvv-----Gse 254 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGEPGTGKTLLAKAVANQT----SATFLRVV-----GSE 254 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCC---CCCeeEEeCCCCCchhHHHHHHhccc----chhhhhhh-----hHH
Confidence 445566666666655322 22222 24478899999999999999999543 22355443 344
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
.+.+++|..|..+ .++....+....+|+|+||||.. ..++|..+|.++..-.-.|. ..
T Consensus 255 LiQkylGdGpklv-----RqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds------rg 323 (440)
T KOG0726|consen 255 LIQKYLGDGPKLV-----RELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS------RG 323 (440)
T ss_pred HHHHHhccchHHH-----HHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc------cC
Confidence 5778887544322 23444455556899999999975 35699998888863322222 35
Q ss_pred ceEEEEecC
Q psy1308 411 DAIFVMTSN 419 (607)
Q Consensus 411 ~~~iI~tsn 419 (607)
++-+||+||
T Consensus 324 DvKvimATn 332 (440)
T KOG0726|consen 324 DVKVIMATN 332 (440)
T ss_pred CeEEEEecc
Confidence 667999999
No 305
>KOG0705|consensus
Probab=98.33 E-value=1.4e-06 Score=89.26 Aligned_cols=63 Identities=29% Similarity=0.288 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy1308 83 QSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146 (607)
Q Consensus 83 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 146 (607)
+.+|.|+||+||+.|++.+.++|+=+| +|+..+|..|+|||.||-+.|..+|+.+|+.+|+..
T Consensus 658 ~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 658 EGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred CCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence 344556666666666666666666544 666666666666666666666666666666665543
No 306
>KOG0729|consensus
Probab=98.31 E-value=2.6e-06 Score=79.87 Aligned_cols=129 Identities=24% Similarity=0.326 Sum_probs=84.4
Q ss_pred HhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 269 RIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.+-|-.+.++.+.+.+... ..|+. .|.-++++||+|+|||.+||++|.-- .--|+++--|++
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgid---ppkgvllygppgtgktl~aravanrt----dacfirvigsel--- 247 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGID---PPKGVLLYGPPGTGKTLCARAVANRT----DACFIRVIGSEL--- 247 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCC---CCCceEEeCCCCCchhHHHHHHhccc----CceEEeehhHHH---
Confidence 3555666666665555322 22322 24578999999999999999998543 334777665443
Q ss_pred chhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEec
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
+.++.|.... ....+.+..+...-|++||||||.. +.++|...|.++..-.-.|..
T Consensus 248 --vqkyvgegar-----mvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr------ 314 (435)
T KOG0729|consen 248 --VQKYVGEGAR-----MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR------ 314 (435)
T ss_pred --HHHHhhhhHH-----HHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC------
Confidence 6666663221 1234556666667899999999864 567999999888643333443
Q ss_pred CceEEEEecCc
Q psy1308 410 KDAIFVMTSNL 420 (607)
Q Consensus 410 ~~~~iI~tsn~ 420 (607)
.|.-++|+||.
T Consensus 315 gnikvlmatnr 325 (435)
T KOG0729|consen 315 GNIKVLMATNR 325 (435)
T ss_pred CCeEEEeecCC
Confidence 45568899994
No 307
>KOG0651|consensus
Probab=98.29 E-value=1.7e-06 Score=83.03 Aligned_cols=103 Identities=23% Similarity=0.379 Sum_probs=69.9
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhC---CC
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC---PN 371 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~---~~ 371 (607)
..|..++++||+|+|||.++++++..+... |+.+-.++. +...+|. ....+.+.++.+ ..
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~n----fl~v~ss~l-----v~kyiGE--------saRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVN----FLKVVSSAL-----VDKYIGE--------SARLIRDMFRYAREVIP 226 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCc----eEEeeHhhh-----hhhhccc--------HHHHHHHHHHHHhhhCc
Confidence 346689999999999999999999887442 555555444 3333332 233344444333 36
Q ss_pred eEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 372 AVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 372 ~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
|++|+||||.. +.++|..|+++++.-.=.|.- ..+=+|||+|.
T Consensus 227 ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l------~rVk~ImatNr 280 (388)
T KOG0651|consen 227 CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL------HRVKTIMATNR 280 (388)
T ss_pred eEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc------ccccEEEecCC
Confidence 99999999873 567999999999843322322 34559999994
No 308
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.27 E-value=1.2e-05 Score=87.24 Aligned_cols=254 Identities=15% Similarity=0.133 Sum_probs=136.3
Q ss_pred HHHHHhHhhhhHHHHHHHHHHHHHhhCCCCC----CCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc
Q psy1308 263 EQRLKDRIVGQESAINIISAAIKRKENGWTD----DDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ 338 (607)
Q Consensus 263 ~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~----~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~ 338 (607)
...+...+.|.+...+.+.-.+-........ -..-+++|+.|-||++|+.+.+.+.+..++. -++..-.+.-.
T Consensus 281 ~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~---vytsgkgss~~ 357 (682)
T COG1241 281 IKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG---VYTSGKGSSAA 357 (682)
T ss_pred HHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce---EEEcccccccc
Confidence 3344556788888666554443222111111 1123689999999999999999999887552 11111111110
Q ss_pred ccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEec--CceEEEE
Q psy1308 339 EKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC--KDAIFVM 416 (607)
Q Consensus 339 ~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~--~~~~iI~ 416 (607)
+- .+... ..+. +| + --.-.+++--+.+||.++||+||++..-...|...|+.++++-.++--... ..+=+++
T Consensus 358 GL--TAav~-rd~~-tg-e-~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLA 431 (682)
T COG1241 358 GL--TAAVV-RDKV-TG-E-WVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLA 431 (682)
T ss_pred Cc--eeEEE-EccC-CC-e-EEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhh
Confidence 00 00000 0000 11 0 001123455678899999999999999999999999999988754331111 3333556
Q ss_pred ecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-CCH
Q psy1308 417 TSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-FSK 495 (607)
Q Consensus 417 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l~~ 495 (607)
+.|-.... +.. +....+. =.+. +.|++|||-+++..- .++
T Consensus 432 AaNP~~Gr---------------yd~----------------~~~~~en-------I~l~-~~lLSRFDLifvl~D~~d~ 472 (682)
T COG1241 432 AANPKFGR---------------YDP----------------KKTVAEN-------INLP-APLLSRFDLIFVLKDDPDE 472 (682)
T ss_pred hhCCCCCc---------------CCC----------------CCCHHHh-------cCCC-hhHHhhCCeeEEecCCCCc
Confidence 65521110 000 0000011 1143 789999997654433 344
Q ss_pred HHHHHHHHHHHHHHH------------------------HHHh--hcCCcEEEeCHhHHHHHHccCCC------------
Q psy1308 496 SELHTLVCRELNFWA------------------------KKAL--DKHNINIVWDIDVETILADGYDV------------ 537 (607)
Q Consensus 496 ~~~~~i~~~~l~~~~------------------------~~~~--~~~~i~l~~~~~a~~~L~~~~~~------------ 537 (607)
+.=..|+.+.+.... +++- .+..+...++++|.+.|.+.|-.
T Consensus 473 ~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~ 552 (682)
T COG1241 473 EKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKR 552 (682)
T ss_pred cchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccC
Confidence 445556665554331 1110 12235678999999988752321
Q ss_pred --CCCccchhHHHHHHHHHHHHHHHHhccCC
Q psy1308 538 --HYGARSIKHEVERQVVSQLAAAHEKSVIG 566 (607)
Q Consensus 538 --~~GaR~L~~~i~~~i~~~l~~~~l~~~~~ 566 (607)
+-=+|.|+..|+ +..+.|+.-+++.+.
T Consensus 553 ~~piT~RqLEsiiR--LaeA~Ak~rLS~~V~ 581 (682)
T COG1241 553 TIPITARQLESIIR--LAEAHAKMRLSDVVE 581 (682)
T ss_pred cccccHHHHHHHHH--HHHHHHhhhccCCCC
Confidence 122566666664 555556665555443
No 309
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.2e-06 Score=88.05 Aligned_cols=131 Identities=24% Similarity=0.342 Sum_probs=84.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC--CC--CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENG--WT--DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~--~~--~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..+.|.+++.+.+.+.+...+.. +. ...-|.-+++.||||+|||.|||+++-.. +-||.....|.+ +
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----~VPFf~iSGS~F-----V 220 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----GVPFFSISGSDF-----V 220 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----CCCceeccchhh-----h
Confidence 35889999998888877544311 11 11335678999999999999999999543 556777766665 4
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH--------------HHHHHHHHhhccceeecCCCcEEec
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP--------------DVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~--------------~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
..+.|.+ .....++....++...||+||||||.... ...+.||.-+| |. . .-
T Consensus 221 emfVGvG-----AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD-GF-------~-~~ 286 (596)
T COG0465 221 EMFVGVG-----ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD-GF-------G-GN 286 (596)
T ss_pred hhhcCCC-----cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc-cC-------C-CC
Confidence 4444532 22233455555555569999999998632 25566666665 11 1 11
Q ss_pred CceEEEEecCcc
Q psy1308 410 KDAIFVMTSNLA 421 (607)
Q Consensus 410 ~~~~iI~tsn~~ 421 (607)
..+++|.+||..
T Consensus 287 ~gviviaaTNRp 298 (596)
T COG0465 287 EGVIVIAATNRP 298 (596)
T ss_pred CceEEEecCCCc
Confidence 457888888843
No 310
>KOG0522|consensus
Probab=98.27 E-value=1.9e-06 Score=87.88 Aligned_cols=87 Identities=32% Similarity=0.490 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCHHHHHHHHh-cCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccH
Q psy1308 88 LTLFRAARYGSAKELKTFIE-NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNP 166 (607)
Q Consensus 88 t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~ 166 (607)
-|+|+++.....+-+..++. .-...++.+|..|.||||+|+..|+.+.++.|+..||++..++.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~--------------- 86 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNN--------------- 86 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccccc---------------
Confidence 45888888877766555433 22356788888999999999999999999999999998877653
Q ss_pred HHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHh
Q psy1308 167 FEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLK 210 (607)
Q Consensus 167 ~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 210 (607)
.||+|||-|+..|+.+++..++.
T Consensus 87 ---------------------~gWs~L~EAv~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 87 ---------------------EGWSPLHEAVSTGNEQIITEVLR 109 (560)
T ss_pred ---------------------ccccHHHHHHHcCCHHHHHHHHH
Confidence 16666666666666666655554
No 311
>KOG0782|consensus
Probab=98.26 E-value=1.2e-06 Score=89.15 Aligned_cols=96 Identities=22% Similarity=0.182 Sum_probs=79.5
Q ss_pred cchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--c
Q psy1308 77 LTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLD-VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF--N 153 (607)
Q Consensus 77 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~--~ 153 (607)
..+..++.+..|.||+|+..|+-++|+|+|++++.. ++..|..|.|+||-|+..++..++.+|++.|+.....|.. |
T Consensus 890 g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~t 969 (1004)
T KOG0782|consen 890 GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKT 969 (1004)
T ss_pred CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCC
Confidence 345567888899999999999999999999999654 5788899999999999999999999999999998877653 4
Q ss_pred hHHHHHHcCCccHHHHHHh
Q psy1308 154 TVHRTAAEKKMNPFEVLLK 172 (607)
Q Consensus 154 ~l~~A~~~~~~~~~~~Ll~ 172 (607)
|-..|-..|..+...||-.
T Consensus 970 p~eraqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 970 PQERAQQAGDPDLAAYLES 988 (1004)
T ss_pred hHHHHHhcCCchHHHHHhh
Confidence 6666666666666666544
No 312
>KOG0737|consensus
Probab=98.24 E-value=1.9e-05 Score=78.18 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=118.0
Q ss_pred HhhhhHHHHHHHHHHHHHhh-----CCCCC-CCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKE-----NGWTD-DDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~-----~~~~~-~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
.+-|.+..++.+.+.+.-.. ..... -..|.-++++||+|+|||.+|+++++.... .|+-+.++...+
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga----~fInv~~s~lt~--- 165 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA----NFINVSVSNLTS--- 165 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC----Ccceeeccccch---
Confidence 45566666666665553211 10111 123457899999999999999999987644 488889888765
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccC--------H---HHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH--------P---DVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~--------~---~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
++||....++ ..+.-+..+-.++++|+||||..- . .+-+.++...| |-.++. -..
T Consensus 166 --KWfgE~eKlv-----~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~~------~~r 231 (386)
T KOG0737|consen 166 --KWFGEAQKLV-----KAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD-GLSSKD------SER 231 (386)
T ss_pred --hhHHHHHHHH-----HHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc-cccCCC------Cce
Confidence 5555221111 012222233457999999998742 1 13344555444 322222 123
Q ss_pred eEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeec
Q psy1308 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491 (607)
Q Consensus 412 ~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~ 491 (607)
++++.+||.+.+.- ...+.|+...+.-.
T Consensus 232 VlVlgATNRP~DlD----------------------------------------------------eAiiRR~p~rf~V~ 259 (386)
T KOG0737|consen 232 VLVLGATNRPFDLD----------------------------------------------------EAIIRRLPRRFHVG 259 (386)
T ss_pred EEEEeCCCCCccHH----------------------------------------------------HHHHHhCcceeeeC
Confidence 67778899554321 33455665533322
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHHhc
Q psy1308 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEKS 563 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~ 563 (607)
=.+.+.-.+|+...|.. .++.-.++-.-+..+.+||+ .+.|++........++-+.+..+
T Consensus 260 lP~~~qR~kILkviLk~--------e~~e~~vD~~~iA~~t~GyS----GSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 260 LPDAEQRRKILKVILKK--------EKLEDDVDLDEIAQMTEGYS----GSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCchhhHHHHHHHHhcc--------cccCcccCHHHHHHhcCCCc----HHHHHHHHHHHhHhHHHHHHHhc
Confidence 22566677777666641 11222222222333334554 46688888888888887776554
No 313
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=7.9e-06 Score=83.00 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=65.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc--------cccchhHhhhcCCC-CCccCCCCchhhHHHhhC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY--------QEKHEVAKLIGAPP-GYLGHDDGGQLTKRLKKC 369 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~--------~~~~~~~~llg~~~-g~~g~~~~~~l~~~~~~~ 369 (607)
.++|+||.|+||+.+|+.+|+.+.-....+-. .|..- ..|.++..+..... ..++-++-..+...+...
T Consensus 26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~--~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHK--SCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 68999999999999999999998542111100 12111 11111111111000 012222222233333333
Q ss_pred ----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 370 ----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 370 ----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
.+-|++||++|+++.+..+.||+.+|+- ..+++||++|+
T Consensus 104 ~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~t~fiL~t~ 146 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLTDAAANALLKTLEEP-----------PENTWFFLACR 146 (334)
T ss_pred cccCCceEEEEcchHhhCHHHHHHHHHHhcCC-----------CCCeEEEEEEC
Confidence 3679999999999999999999999964 25778988887
No 314
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=8.2e-06 Score=81.83 Aligned_cols=104 Identities=13% Similarity=0.250 Sum_probs=65.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh-cCCCC-----------CccCCCCchhhHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI-GAPPG-----------YLGHDDGGQLTKRL 366 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll-g~~~g-----------~~g~~~~~~l~~~~ 366 (607)
.++|.||.|+||+.+|+.+++.+.-.+... --|..- .+...+. |..|. .++-++-..+...+
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~---~~Cg~C---~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQS---EACGFC---HSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCC---CCCCCC---HHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence 799999999999999999999986542111 011111 1111111 11222 11111112223333
Q ss_pred hhCC----CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 367 KKCP----NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 367 ~~~~----~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
...+ +-|++||++|+++.+..+.||+.+|+- ..+++||++|+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~t~fiL~t~ 146 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNESASNALLKTLEEP-----------APNCLFLLVTH 146 (319)
T ss_pred hhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC-----------CCCeEEEEEEC
Confidence 3333 679999999999999999999999964 36788999877
No 315
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=1.2e-05 Score=87.77 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=39.2
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
..+++|...++.+...+...... ..+- .++|.||+|+|||.+++.++..+.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45889999999887777654322 1233 589999999999999999998764
No 316
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.21 E-value=8.6e-06 Score=88.42 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=113.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCC--CCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP--GYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~--g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
-+++.|+.|++|+.+++.++..+.. ..||+.++.+.- ...++|... .-..........+++..+++||||+
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp~--~~p~r~~p~~~t-----~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l 99 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPA--GTPLRRLPPGIA-----DDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVL 99 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCC--CCCcccCCCCCc-----HHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence 6899999999999999999999864 356777766543 456776420 0000001112245677889999999
Q ss_pred ecCCccCHHHHHHHHHhhccceeecC-CCcEEec-CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCc
Q psy1308 377 DEVDKAHPDVLTVLLQLFDEGRLTDG-KGKTIEC-KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNL 454 (607)
Q Consensus 377 DEiek~~~~~~~~Ll~~~~~~~~~~~-~g~~~~~-~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (607)
||+..+++.+++.|++.+++|.++-. .|.++.+ .+.++|.|-| +.+.
T Consensus 100 De~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~-~~~~------------------------------ 148 (584)
T PRK13406 100 AMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE-GAEE------------------------------ 148 (584)
T ss_pred cCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC-Chhc------------------------------
Confidence 99999999999999999999988763 3444443 5666666522 1100
Q ss_pred chhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHH--HHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 455 DVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTL--VCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i--~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
...++ +.++.||+-.+...+++..+.... ....+....+++ + .+.+++++++++.
T Consensus 149 -----------------~~~L~-~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl----~-~v~v~~~~l~~i~ 205 (584)
T PRK13406 149 -----------------DERAP-AALADRLAFHLDLDGLALRDAREIPIDADDIAAARARL----P-AVGPPPEAIAALC 205 (584)
T ss_pred -----------------ccCCC-HHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHH----c-cCCCCHHHHHHHH
Confidence 01233 779999988888877766554321 111233333333 1 4677888888875
Q ss_pred c
Q psy1308 533 D 533 (607)
Q Consensus 533 ~ 533 (607)
.
T Consensus 206 ~ 206 (584)
T PRK13406 206 A 206 (584)
T ss_pred H
Confidence 4
No 317
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=3.9e-06 Score=84.99 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=54.7
Q ss_pred CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCccccc
Q psy1308 371 NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQ 450 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (607)
+-|++||++|+++++..+.||+.+|+- ..+++||++|+...
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~t~fiL~t~~~~---------------------------- 173 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-----------PPGTVFLLVSARID---------------------------- 173 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-----------CcCcEEEEEECChh----------------------------
Confidence 569999999999999999999999953 26778888877211
Q ss_pred CCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHH
Q psy1308 451 GSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCR 504 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~ 504 (607)
.+. |-+.+|. ..+.|.|++.+++.+.+..
T Consensus 174 -----------------------~LL-pTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 -----------------------RLL-PTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -----------------------hCc-HHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 122 6778888 5688889999888877654
No 318
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.14 E-value=7.1e-05 Score=69.66 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=120.4
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|-+...+.+.+.-.+...|.+ ...++++|..|+||+.++|++...+... .-.++.++-.....
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~p----ANnVLLwGaRGtGKSSLVKA~~~e~~~~-glrLVEV~k~dl~~--------- 126 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLP----ANNVLLWGARGTGKSSLVKALLNEYADE-GLRLVEVDKEDLAT--------- 126 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCc----ccceEEecCCCCChHHHHHHHHHHHHhc-CCeEEEEcHHHHhh---------
Confidence 477777777777777666666643 2279999999999999999999887665 33355555433321
Q ss_pred CCCCCccCCCCchhhHHHhhCCCe-EEEEecCCcc-CHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHH
Q psy1308 349 APPGYLGHDDGGQLTKRLKKCPNA-VVLFDEVDKA-HPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~~~~~-vl~lDEiek~-~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~ 426 (607)
-..+.+.++..+.- |||.|+.-== ..+....|-.++|.| + .-...|++|..|||.-.- +.
T Consensus 127 ----------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~-v------e~rP~NVl~YATSNRRHL-l~ 188 (287)
T COG2607 127 ----------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG-V------EGRPANVLFYATSNRRHL-LP 188 (287)
T ss_pred ----------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC-c------ccCCCeEEEEEecCCccc-cc
Confidence 12456667777744 5666653211 234556666677633 2 234589999999994321 11
Q ss_pred HHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHH
Q psy1308 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCREL 506 (607)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l 506 (607)
+... +.. +.....--+ +++... -.|-.||.--.-|.|.+.++.-+|+....
T Consensus 189 e~~~---------------dn~--~~~~eih~~---------eaveEK---lSlSDRFGLwL~F~~~~Q~~YL~~V~~~a 239 (287)
T COG2607 189 EDMK---------------DNE--GSTGEIHPS---------EAVEEK---LSLSDRFGLWLSFYPCDQDEYLKIVDHYA 239 (287)
T ss_pred Hhhh---------------hCC--CcccccChh---------HHHHHh---hchhhhcceeecccCCCHHHHHHHHHHHH
Confidence 1100 000 000000001 111111 23666787889999999999999988877
Q ss_pred HHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchh
Q psy1308 507 NFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIK 545 (607)
Q Consensus 507 ~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~ 545 (607)
.. ++ +.++++.++.=+..|...-|.|.=|
T Consensus 240 ~~--------~~--l~~~~e~l~~eAl~WAt~rg~RSGR 268 (287)
T COG2607 240 KH--------FG--LDISDEELHAEALQWATTRGGRSGR 268 (287)
T ss_pred HH--------cC--CCCCHHHHHHHHHHHHHhcCCCccH
Confidence 42 23 3344555544332355556666554
No 319
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.14 E-value=5.5e-05 Score=80.08 Aligned_cols=146 Identities=27% Similarity=0.354 Sum_probs=93.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec----cccccc----
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM----SEYQEK---- 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~----a~~~~~---- 340 (607)
.++|++.+++.+...++....++... ...++|+||+|+|||+|++.|++.+..- ++.++.. +...++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~--~~IL~LvGPpG~GKSsLa~~la~~le~~---~~Y~~kg~~~~sP~~e~PL~L 151 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEK--KQILYLLGPVGGGKSSLAERLKSLMERV---PIYVLKANGERSPVNESPLGL 151 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCC--CceEEEecCCCCCchHHHHHHHHHHHhC---cceeecCCCCCCCCCCCCCCC
Confidence 47899999999999998877776443 2379999999999999999999986331 2222111 000000
Q ss_pred -------chhHhhhcCCCCCccC-----------------------------------------CC----Cc--------
Q psy1308 341 -------HEVAKLIGAPPGYLGH-----------------------------------------DD----GG-------- 360 (607)
Q Consensus 341 -------~~~~~llg~~~g~~g~-----------------------------------------~~----~~-------- 360 (607)
....+.+|-+..+... +. ..
T Consensus 152 ~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~vdi 231 (644)
T PRK15455 152 FDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKVDI 231 (644)
T ss_pred CChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccceeH
Confidence 0001111111000000 00 00
Q ss_pred --------------hhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 361 --------------QLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 361 --------------~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
...+.+..+++|++=|=|+-|++.+++..||.+.++|.+.-.+|...-.-+.+||..||
T Consensus 232 ~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsN 304 (644)
T PRK15455 232 RKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSN 304 (644)
T ss_pred HhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCC
Confidence 12234455667888888999999999999999999999976555433345778999999
No 320
>KOG0742|consensus
Probab=98.12 E-value=1.9e-05 Score=78.62 Aligned_cols=138 Identities=29% Similarity=0.393 Sum_probs=83.0
Q ss_pred CCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCC-Ce
Q psy1308 295 DHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCP-NA 372 (607)
Q Consensus 295 ~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~-~~ 372 (607)
..|. .++|+||||+|||..||.|+.... +|++..++.. ++ |-|--+-..-..+.....+.. +=
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SG---------lDYA~mTGGD-VA-----PlG~qaVTkiH~lFDWakkS~rGL 445 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSG---------LDYAIMTGGD-VA-----PLGAQAVTKIHKLFDWAKKSRRGL 445 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcC---------CceehhcCCC-cc-----ccchHHHHHHHHHHHHHhhcccce
Confidence 3355 899999999999999999997643 3454443311 10 111000001112333334444 45
Q ss_pred EEEEecCCcc---------CHH---HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccc
Q psy1308 373 VVLFDEVDKA---------HPD---VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFS 440 (607)
Q Consensus 373 vl~lDEiek~---------~~~---~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~ 440 (607)
+|||||.|.. +.+ .++.|| +..|. ..++.+++++||...+
T Consensus 446 llFIDEADAFLceRnktymSEaqRsaLNAlL--fRTGd---------qSrdivLvlAtNrpgd----------------- 497 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYMSEAQRSALNALL--FRTGD---------QSRDIVLVLATNRPGD----------------- 497 (630)
T ss_pred EEEehhhHHHHHHhchhhhcHHHHHHHHHHH--HHhcc---------cccceEEEeccCCccc-----------------
Confidence 7888998753 222 333333 22232 2256788999994322
Q ss_pred cCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHH
Q psy1308 441 KRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWA 510 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~ 510 (607)
|. ...-.|||++|.|.-...+|-..|+..+++.+.
T Consensus 498 ----------------------------------lD-sAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 498 ----------------------------------LD-SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred ----------------------------------hh-HHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 11 445568999999877788999999999998776
No 321
>PRK12377 putative replication protein; Provisional
Probab=98.12 E-value=2e-05 Score=76.31 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=67.5
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
..++|+|++|+|||.|+.+++..+... ......+.++.+... +...+. .......+...+. .-.+|+||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~~l~~~--l~~~~~------~~~~~~~~l~~l~--~~dLLiID 170 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVPDVMSR--LHESYD------NGQSGEKFLQELC--KVDLLVLD 170 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHHHHHHH--HHHHHh------ccchHHHHHHHhc--CCCEEEEc
Confidence 378999999999999999999988654 333444444332111 111111 0001112222232 34699999
Q ss_pred cC--CccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 378 EV--DKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 378 Ei--ek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
|+ +..++..+..|.++++... . ...=.|+|||+..+++.+
T Consensus 171 Dlg~~~~s~~~~~~l~~ii~~R~-~---------~~~ptiitSNl~~~~l~~ 212 (248)
T PRK12377 171 EIGIQRETKNEQVVLNQIIDRRT-A---------SMRSVGMLTNLNHEAMST 212 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-h---------cCCCEEEEcCCCHHHHHH
Confidence 99 6677888889999998432 1 112268899999887754
No 322
>PRK08116 hypothetical protein; Validated
Probab=98.10 E-value=3.7e-05 Score=75.83 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=68.7
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
..++|+|++|+|||.|+.+++..+... ..++..++.+.+-. .+..-+... +......+...+. ...+|+||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~~~ll~--~i~~~~~~~----~~~~~~~~~~~l~--~~dlLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNFPQLLN--RIKSTYKSS----GKEDENEIIRSLV--NADLLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHH--HHHHHHhcc----ccccHHHHHHHhc--CCCEEEEe
Confidence 468999999999999999999988654 34455555433211 111111100 0001112223333 34599999
Q ss_pred cC--CccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 378 EV--DKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 378 Ei--ek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
|+ ++..+..+..|.++++... . .+..+|+|||....++.+
T Consensus 186 Dlg~e~~t~~~~~~l~~iin~r~-~---------~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 186 DLGAERDTEWAREKVYNIIDSRY-R---------KGLPTIVTTNLSLEELKN 227 (268)
T ss_pred cccCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHHHH
Confidence 99 6678888999999988431 1 123489999988777643
No 323
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.08 E-value=7.5e-06 Score=72.20 Aligned_cols=119 Identities=23% Similarity=0.188 Sum_probs=68.6
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHh---hhcC-CCCCccCCCCchhhHHHhhCCCeE
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAK---LIGA-PPGYLGHDDGGQLTKRLKKCPNAV 373 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~---llg~-~~g~~g~~~~~~l~~~~~~~~~~v 373 (607)
..+++.||+|+|||.+++.++..+... ..++..+++........... .... .....+..........++..+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 368999999999999999999988654 23577777766544332221 1111 111111111112334444444599
Q ss_pred EEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 374 VLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 374 l~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
+++||++.+.............. ...........+..+|+++|.
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 99999999988777665543110 000000012356678888883
No 324
>KOG2035|consensus
Probab=98.06 E-value=3.4e-05 Score=73.12 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=71.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch-------hH--hhhcCCCCCccCCCCchhhHHHh--
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE-------VA--KLIGAPPGYLGHDDGGQLTKRLK-- 367 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~-------~~--~llg~~~g~~g~~~~~~l~~~~~-- 367 (607)
+++++||+|+||...+..+.+.+++.+- .-.+++...+..... ++ .-+.-.|...|+.+.--+.+++.
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gv-eklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGV-EKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCc-hheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 8999999999999999999999988531 122222222211100 00 00111234444444333333332
Q ss_pred ----------hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 368 ----------KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 368 ----------~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
+.++-+|+|-|+|++..+.|..|..-||. ..+++++|+.+|.
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns 166 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNS 166 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecC
Confidence 23578999999999999999999999983 4478999999993
No 325
>KOG0521|consensus
Probab=98.06 E-value=2.1e-06 Score=95.45 Aligned_cols=87 Identities=29% Similarity=0.394 Sum_probs=74.8
Q ss_pred CCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcch
Q psy1308 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229 (607)
Q Consensus 150 d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A 229 (607)
.+.++||.|+..+..-++++|++.|+++|..+.. |+||||.+...|+...+..|+++|+++++.+.+|++|+++|
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~-----g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSK-----GRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcchhhhcc-----CCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence 3466899999999999999999999998877444 99999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHH
Q psy1308 230 EDANIKQILQKY 241 (607)
Q Consensus 230 ~~~~~~~~~~~l 241 (607)
....+.+++-++
T Consensus 730 ~~~~~~d~~~l~ 741 (785)
T KOG0521|consen 730 MEAANADIVLLL 741 (785)
T ss_pred hhhccccHHHHH
Confidence 777666655443
No 326
>KOG0732|consensus
Probab=98.06 E-value=3e-05 Score=86.94 Aligned_cols=130 Identities=26% Similarity=0.359 Sum_probs=79.5
Q ss_pred HhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 269 RIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.+.|.+..+..+.+.+-.. ..+++ .|--++|+||+|+|||.++++++...... + .-+.+.|.- +.
T Consensus 266 ~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it---pPrgvL~~GppGTGkTl~araLa~~~s~~-~-~kisffmrk--ga 338 (1080)
T KOG0732|consen 266 SVGGLENYINQLKEMVLLPLLYPEFFDNFNIT---PPRGVLFHGPPGTGKTLMARALAAACSRG-N-RKISFFMRK--GA 338 (1080)
T ss_pred ccccHHHHHHHHHHHHHhHhhhhhHhhhcccC---CCcceeecCCCCCchhHHHHhhhhhhccc-c-cccchhhhc--Cc
Confidence 4666777777776655322 12222 23368999999999999999999886442 1 122222211 11
Q ss_pred chhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEec
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
.-..+++|... .+-..+.+..++...+|+|||||+-+ |..+...||-+|+.- + ..
T Consensus 339 D~lskwvgEaE-----RqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl---d------sR 404 (1080)
T KOG0732|consen 339 DCLSKWVGEAE-----RQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL---D------SR 404 (1080)
T ss_pred hhhccccCcHH-----HHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC---C------CC
Confidence 11233333211 11123455566667899999999954 456888999999732 1 23
Q ss_pred CceEEEEecC
Q psy1308 410 KDAIFVMTSN 419 (607)
Q Consensus 410 ~~~~iI~tsn 419 (607)
..+++|-+||
T Consensus 405 gqVvvigATn 414 (1080)
T KOG0732|consen 405 GQVVVIGATN 414 (1080)
T ss_pred CceEEEcccC
Confidence 5678999999
No 327
>KOG0520|consensus
Probab=98.04 E-value=5.3e-06 Score=91.55 Aligned_cols=126 Identities=20% Similarity=0.154 Sum_probs=98.5
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCC--CCCCCCchHHHHHHcCCccHHHHHH-hcCCCccccCCCCcCcC
Q psy1308 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANP--NLGDLFNTVHRTAAEKKMNPFEVLL-KREDEFNDVLNPNMTFL 188 (607)
Q Consensus 113 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~--~~~d~~~~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~d~~ 188 (607)
.......|+|-||+++..++.-.++.+++- |... ...|+.|-+|+ |..++.++.-+|+ -.|..++..+.+
T Consensus 567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~----- 640 (975)
T KOG0520|consen 567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRN----- 640 (975)
T ss_pred cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCC-----
Confidence 444566789999999999999999999985 4333 34667788998 5556666655544 456667766554
Q ss_pred CcchhhHHHhcCCHHHHHHHHhcCCCC------CccCCCCCCCCcchhhhhHHHHHHHHHHh
Q psy1308 189 GFSALHYGVVAGNTEVVELLLKSGADP------TVKDNSGHIPSDYAEDANIKQILQKYAEK 244 (607)
Q Consensus 189 g~TpLh~A~~~g~~~~v~~Ll~~gad~------~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~ 244 (607)
||||||||+.+|+..++..|+..|+++ +..+..|.|+-.+|..+|+..+..+|-+.
T Consensus 641 G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 641 GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 999999999999999999999888654 44456799999999999999999888776
No 328
>KOG0740|consensus
Probab=98.02 E-value=3.5e-05 Score=79.01 Aligned_cols=100 Identities=26% Similarity=0.326 Sum_probs=60.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhC---CCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 269 RIVGQESAINIISAAIKRKEN---GWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~---~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.+.|...+...+..++..... .+..-..|. .+++.||+|+|||.|++++|...... |+-+..+.. ..
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at----ff~iSassL-----ts 224 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT----FFNISASSL-----TS 224 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce----EeeccHHHh-----hh
Confidence 466666666666555543211 122222344 78999999999999999999776443 443333332 23
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA 382 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~ 382 (607)
++.|.. ..-...+....+....+|+|+||||++
T Consensus 225 K~~Ge~-----eK~vralf~vAr~~qPsvifidEidsl 257 (428)
T KOG0740|consen 225 KYVGES-----EKLVRALFKVARSLQPSVIFIDEIDSL 257 (428)
T ss_pred hccChH-----HHHHHHHHHHHHhcCCeEEEechhHHH
Confidence 333321 011124555667777999999999874
No 329
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=1.2e-05 Score=81.28 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=62.8
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcC----CceEEe-ecc--cccccchhHhhhcC----CCC----CccCCCCchh
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKK----EAFIRL-DMS--EYQEKHEVAKLIGA----PPG----YLGHDDGGQL 362 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~----~~~~~l-~~a--~~~~~~~~~~llg~----~~g----~~g~~~~~~l 362 (607)
-.++|.||+|+||+.+|+.+++.+.-... .++-.. .|. .-..|.++..+-.. .+| .++-++-..+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l 101 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREI 101 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHH
Confidence 36899999999999999999999753211 111000 000 00011111111000 001 0111122233
Q ss_pred hHHHhhCC----CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 363 TKRLKKCP----NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 363 ~~~~~~~~----~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
.+.+...| +-|+++|+++.+++..++.|++.+++.. .++.||++|+
T Consensus 102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-----------~~~~~Ilvth 151 (325)
T PRK08699 102 IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-----------PQVVFLLVSH 151 (325)
T ss_pred HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-----------CCCEEEEEeC
Confidence 34444333 6799999999999999999999999642 2355666666
No 330
>KOG2384|consensus
Probab=97.98 E-value=2.2e-05 Score=69.72 Aligned_cols=40 Identities=38% Similarity=0.596 Sum_probs=28.8
Q ss_pred CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCC
Q psy1308 111 LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG-ANPNLGD 150 (607)
Q Consensus 111 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d 150 (607)
.++|.+|..|||||++|+..|+.+.|.+|+.+| +.+...|
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d 43 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD 43 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc
Confidence 467777777777777777777777777777777 5665544
No 331
>KOG0741|consensus
Probab=97.96 E-value=2.3e-05 Score=80.55 Aligned_cols=104 Identities=20% Similarity=0.318 Sum_probs=65.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccC---CCCchhhHHHhhCCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGH---DDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~---~~~~~l~~~~~~~~~~vl~ 375 (607)
-++++||||||||.+||.|...++.+. | .-.++..-..++.|..+..+.. +........-....-.|++
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNAre--P------KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIII 329 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNARE--P------KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIII 329 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCC--C------cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEE
Confidence 589999999999999999999998852 2 1234444444554433221110 0000000011112346999
Q ss_pred EecCCc-------------cCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 376 FDEVDK-------------AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 376 lDEiek-------------~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
|||||. .|..|++.||.-+|.- -...|+++|--||
T Consensus 330 FDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV---------eqLNNILVIGMTN 377 (744)
T KOG0741|consen 330 FDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV---------EQLNNILVIGMTN 377 (744)
T ss_pred ehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH---------HhhhcEEEEeccC
Confidence 999986 4778999999988721 1357888998888
No 332
>KOG0511|consensus
Probab=97.95 E-value=1.6e-05 Score=77.75 Aligned_cols=75 Identities=27% Similarity=0.342 Sum_probs=62.0
Q ss_pred CHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCc-hHHHHHHcC
Q psy1308 87 DLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN-TVHRTAAEK 162 (607)
Q Consensus 87 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~-~l~~A~~~~ 162 (607)
.--|..||+.|+.+.|++|++.| .++|..|....+||.+|+-.||.++|++|+++||-.....-.| --|+++.+.
T Consensus 37 f~elceacR~GD~d~v~~LVetg-vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaLnd 112 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETG-VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGALND 112 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhC-CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhhhH
Confidence 44589999999999999999988 9999999999999999999999999999999998655422223 335555443
No 333
>KOG2227|consensus
Probab=97.94 E-value=8.4e-05 Score=75.69 Aligned_cols=215 Identities=17% Similarity=0.221 Sum_probs=127.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCC-ceEEeecccccccchhH-hh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE-AFIRLDMSEYQEKHEVA-KL 346 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~-~~~~l~~a~~~~~~~~~-~l 346 (607)
.+.|.+.-++.+...+..+... +++.++.+.|.+|+|||.+...+...+...... ..+.++|...+....+- .+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 4667777777777666665443 335688999999999999988666554333233 23667777766655542 22
Q ss_pred hcCC-CCCccCCCCch----hhHHHhhC-CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 347 IGAP-PGYLGHDDGGQ----LTKRLKKC-PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 347 lg~~-~g~~g~~~~~~----l~~~~~~~-~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
++.- .+-.+...+.+ +...+... ..=++++||+|.+-..-+..|+.+++=-++ ..+..++|-..|.
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l--------p~sr~iLiGiANs 298 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL--------PNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC--------Ccceeeeeeehhh
Confidence 2221 01111112212 22222222 256899999999998888888888873222 1234455555551
Q ss_pred chHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccc---cceeeeccCCHHH
Q psy1308 421 ASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRI---NEIVYFLPFSKSE 497 (607)
Q Consensus 421 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri---~~iv~f~pl~~~~ 497 (607)
-. +.++|. |-|..|. ..++.|.|++.++
T Consensus 299 --lD----------------------------------------------lTdR~L-prL~~~~~~~P~~l~F~PYTk~q 329 (529)
T KOG2227|consen 299 --LD----------------------------------------------LTDRFL-PRLNLDLTIKPKLLVFPPYTKDQ 329 (529)
T ss_pred --hh----------------------------------------------HHHHHh-hhhhhccCCCCceeeecCCCHHH
Confidence 11 112233 4444433 4589999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~ 553 (607)
+.+|+...+.... ...+-+.|+++.+. -..+.+..|-+-.++++.|+
T Consensus 330 I~~Il~~rl~~~~---------t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 330 IVEILQQRLSEES---------TSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred HHHHHHHHHhccc---------ccccchHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 9999887776432 22233467787774 45566777776666665544
No 334
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00022 Score=78.53 Aligned_cols=112 Identities=22% Similarity=0.398 Sum_probs=77.3
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccchh
Q psy1308 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~~ 343 (607)
++|.+..++.+.+.+.+.... .-++.|++|+|||.++.-+|...-..+ ......+||+...
T Consensus 172 vIGRd~EI~r~iqIL~RR~KN--------NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~Lv----- 238 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTKN--------NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLV----- 238 (786)
T ss_pred CcChHHHHHHHHHHHhccCCC--------CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHh-----
Confidence 789999999998888766422 234889999999999999998764321 3346677776542
Q ss_pred HhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCcc---------CHHHHHHHHHhhcccee
Q psy1308 344 AKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKA---------HPDVLTVLLQLFDEGRL 399 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~---------~~~~~~~Ll~~~~~~~~ 399 (607)
+...|.|.=+. ..+...++.++.-|+|||||+.+ .-+.-+.|...+..|++
T Consensus 239 -----AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL 300 (786)
T COG0542 239 -----AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL 300 (786)
T ss_pred -----ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe
Confidence 22345553111 23556677777999999998763 24577788888887653
No 335
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.93 E-value=6.4e-05 Score=77.11 Aligned_cols=173 Identities=16% Similarity=0.266 Sum_probs=107.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCC-ceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKE-AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~-~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
+++++|++|.|||.|.+++.........+ .+..+....+.. ..+..+.. +....+.+.. .-.+++||
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-~~v~a~~~--------~~~~~Fk~~y---~~dlllID 182 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-DFVKALRD--------NEMEKFKEKY---SLDLLLID 182 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH-HHHHHHHh--------hhHHHHHHhh---ccCeeeec
Confidence 68899999999999999999887554222 233333323211 11111111 0011122222 34599999
Q ss_pred cCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcc
Q psy1308 378 EVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLD 455 (607)
Q Consensus 378 Eiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (607)
+|+-+.. ..|..|...+.. +.+. +..+|+||...+.++..
T Consensus 183 Diq~l~gk~~~qeefFh~FN~--l~~~--------~kqIvltsdr~P~~l~~---------------------------- 224 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNA--LLEN--------GKQIVLTSDRPPKELNG---------------------------- 224 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHH--HHhc--------CCEEEEEcCCCchhhcc----------------------------
Confidence 9998543 567777776642 1111 11588888865554421
Q ss_pred hhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 456 VTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
+. |.|.+|+. .++.-.|++.+....|+..... . -.+.+++++..+|++
T Consensus 225 -------------------~~-~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~-------~---~~~~i~~ev~~~la~ 274 (408)
T COG0593 225 -------------------LE-DRLRSRLEWGLVVEIEPPDDETRLAILRKKAE-------D---RGIEIPDEVLEFLAK 274 (408)
T ss_pred -------------------cc-HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH-------h---cCCCCCHHHHHHHHH
Confidence 11 66677774 3677788899999988776322 1 257789999999985
Q ss_pred cCCCCCCccchhHHHHHHHH
Q psy1308 534 GYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 534 ~~~~~~GaR~L~~~i~~~i~ 553 (607)
....++|+|...+++...
T Consensus 275 --~~~~nvReLegaL~~l~~ 292 (408)
T COG0593 275 --RLDRNVRELEGALNRLDA 292 (408)
T ss_pred --HhhccHHHHHHHHHHHHH
Confidence 345778999988876544
No 336
>PF13173 AAA_14: AAA domain
Probab=97.92 E-value=5.9e-05 Score=65.64 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=59.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhh---CCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK---CPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~---~~~~vl~ 375 (607)
.+++.||.|+|||.+++.+++.+. .......+++.......... . .+...+.+ .....||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~i~ 66 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLAD--P-------------DLLEYFLELIKPGKKYIF 66 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhh--h-------------hhHHHHHHhhccCCcEEE
Confidence 578999999999999999998775 24457777776654321110 0 01111111 1467999
Q ss_pred EecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 376 FDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 376 lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
||||.+++ +....+-.+.+++ .+..||+|++
T Consensus 67 iDEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS 97 (128)
T PF13173_consen 67 IDEIQYLP-DWEDALKFLVDNG------------PNIKIILTGS 97 (128)
T ss_pred Eehhhhhc-cHHHHHHHHHHhc------------cCceEEEEcc
Confidence 99999996 5777777777643 2445677665
No 337
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.89 E-value=0.00011 Score=72.46 Aligned_cols=115 Identities=27% Similarity=0.397 Sum_probs=74.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
+++++||+|+|||.+++...+.+... ..-...++++..+....+.+++... .-...++.+.. ......|+|+|+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~-~~~~~~~~~s~~Tts~~~q~~ie~~---l~k~~~~~~gP--~~~k~lv~fiDD 108 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSD-KYLVITINFSAQTTSNQLQKIIESK---LEKRRGRVYGP--PGGKKLVLFIDD 108 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTC-CEEEEEEES-TTHHHHHHHHCCCTT---ECECTTEEEEE--ESSSEEEEEEET
T ss_pred cEEEECCCCCchhHHHHhhhccCCcc-ccceeEeeccCCCCHHHHHHHHhhc---EEcCCCCCCCC--CCCcEEEEEecc
Confidence 68999999999999999877655432 2235568888887777776666431 11111111111 123457999999
Q ss_pred CCccCHH------HHHHHHHhhccceeecCCC-cEEecCceEEEEecC
Q psy1308 379 VDKAHPD------VLTVLLQLFDEGRLTDGKG-KTIECKDAIFVMTSN 419 (607)
Q Consensus 379 iek~~~~------~~~~Ll~~~~~~~~~~~~g-~~~~~~~~~iI~tsn 419 (607)
+.-..++ ....|.|+++.|-+.|... .-....++.+|++.+
T Consensus 109 lN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~ 156 (272)
T PF12775_consen 109 LNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMN 156 (272)
T ss_dssp TT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEES
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecC
Confidence 8765433 5688999999988888643 335667888998877
No 338
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=8.9e-05 Score=73.21 Aligned_cols=127 Identities=19% Similarity=0.263 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEE-eecc---c--ccccchhHh
Q psy1308 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR-LDMS---E--YQEKHEVAK 345 (607)
Q Consensus 272 Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~-l~~a---~--~~~~~~~~~ 345 (607)
.|..+++.+..++...+. |-.++|.|+ +||+.+|+.+++.+.-.+..+..+ -.|. . -..|.++ .
T Consensus 6 ~q~~~~~~L~~~~~~~rl-------~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~-~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRL-------NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDV-T 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCc-------ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCe-e
Confidence 467778888777766542 236899996 689999999999886542111000 0010 0 0011111 1
Q ss_pred hhcCCCCCccCCCCchhhHHHhhC----CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 346 LIGAPPGYLGHDDGGQLTKRLKKC----PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 346 llg~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
++......++-++-..+...+... ++-|++||++|+++++..+.||+.+|+- ..+++||++|+
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP-----------p~~t~~iL~t~ 142 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEP-----------QSEIYIFLLTN 142 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCC-----------CCCeEEEEEEC
Confidence 111111111112222233333333 3579999999999999999999999963 25678888877
No 339
>KOG0521|consensus
Probab=97.87 E-value=1.1e-05 Score=89.80 Aligned_cols=86 Identities=31% Similarity=0.339 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHH
Q psy1308 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYG 196 (607)
Q Consensus 119 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A 196 (607)
.|.|+||.|+..|..-++++|++.|+++|..|. .+|+|.+...|+...+..|+++|++.+..+. +|.+||++|
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~-----~~~~~l~~a 729 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDP-----DGKLPLDIA 729 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCc-----cCcchhhHH
Confidence 456666666666666666666666666666554 3466666666666666666666666665533 377777777
Q ss_pred HhcCCHHHHHHHH
Q psy1308 197 VVAGNTEVVELLL 209 (607)
Q Consensus 197 ~~~g~~~~v~~Ll 209 (607)
....+.+++-+|.
T Consensus 730 ~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 730 MEAANADIVLLLR 742 (785)
T ss_pred hhhccccHHHHHh
Confidence 6666666655444
No 340
>KOG0511|consensus
Probab=97.85 E-value=8.7e-05 Score=72.69 Aligned_cols=69 Identities=36% Similarity=0.409 Sum_probs=42.4
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCH
Q psy1308 123 PLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNT 202 (607)
Q Consensus 123 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~ 202 (607)
-|..||+.|..+.|++|++.|.++|..|.+ ..+||.+|+..||.
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~f------------------------------------D~spL~lAsLcGHe 82 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRF------------------------------------DSSPLYLASLCGHE 82 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcc------------------------------------cccHHHHHHHcCcH
Confidence 455666666666666666666666666553 45566666666666
Q ss_pred HHHHHHHhcCCCCCccCCCCCCCCc
Q psy1308 203 EVVELLLKSGADPTVKDNSGHIPSD 227 (607)
Q Consensus 203 ~~v~~Ll~~gad~~~~d~~g~Tpl~ 227 (607)
++|++||++||-...-..+|.-++.
T Consensus 83 ~vvklLLenGAiC~rdtf~G~RC~Y 107 (516)
T KOG0511|consen 83 DVVKLLLENGAICSRDTFDGDRCHY 107 (516)
T ss_pred HHHHHHHHcCCcccccccCcchhhh
Confidence 6667666666554444444544433
No 341
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.85 E-value=2e-05 Score=80.25 Aligned_cols=249 Identities=15% Similarity=0.147 Sum_probs=120.1
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHhhCCCC----CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 262 LEQRLKDRIVGQESAINIISAAIKRKENGWT----DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 262 L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~----~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
|...+...+.|.+.....+.-.+-....... .....+++|++|.+|+||+.+.+.+++...+. +.......
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-----v~~~g~~~ 92 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-----VYTSGKGS 92 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-----EEEECCGS
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCce-----EEECCCCc
Confidence 4444555677766655444322221111100 11234599999999999999999876554331 11111111
Q ss_pred cccchhHhhhcCCCCCccCCCCch--hhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCC-cEE-ecCceE
Q psy1308 338 QEKHEVAKLIGAPPGYLGHDDGGQ--LTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKG-KTI-ECKDAI 413 (607)
Q Consensus 338 ~~~~~~~~llg~~~g~~g~~~~~~--l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g-~~~-~~~~~~ 413 (607)
+.. .|........ ..+++ -.+.+-.+.+||.++||+++++.+....|+++||.++++-.++ ... -..++-
T Consensus 93 s~~----gLta~~~~d~--~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 93 SAA----GLTASVSRDP--VTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp TCC----CCCEEECCCG--GTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred ccC----Cccceecccc--ccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 100 0110000000 00111 2345667889999999999999999999999999999987654 322 235677
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceee-ecc
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVY-FLP 492 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~-f~p 492 (607)
|++++|-........ . ...+.+ .+. +.|++|||-++. ..+
T Consensus 167 vlaa~NP~~g~~~~~-------------------~------------~~~~ni-------~l~-~~LLSRFDLif~l~D~ 207 (331)
T PF00493_consen 167 VLAAANPKFGRYDPN-------------------K------------SLSENI-------NLP-PPLLSRFDLIFLLRDK 207 (331)
T ss_dssp EEEEE--TT--S-TT-------------------S-------------CGCCT--------S--CCCHCC-SEEECC--T
T ss_pred hHHHHhhhhhhcchh-------------------h------------hhHHhc-------ccc-hhhHhhcCEEEEeccc
Confidence 889988332211000 0 000000 133 889999997644 455
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-----------------------h-hcCCcEEEeCHhHHHHHHccCC------------
Q psy1308 493 FSKSELHTLVCRELNFWAKKA-----------------------L-DKHNINIVWDIDVETILADGYD------------ 536 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~-----------------------~-~~~~i~l~~~~~a~~~L~~~~~------------ 536 (607)
.+.+.=..|+.+.+....... . .+..+..++++++.++|.+.|-
T Consensus 208 ~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~ 287 (331)
T PF00493_consen 208 PDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKS 287 (331)
T ss_dssp TT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-
T ss_pred cccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccc
Confidence 665544555554443221110 0 0114677899999988874221
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHh
Q psy1308 537 VHYGARSIKHEVERQVVSQLAAAHEK 562 (607)
Q Consensus 537 ~~~GaR~L~~~i~~~i~~~l~~~~l~ 562 (607)
.+..+|.|+..|+ +..+.|++.++
T Consensus 288 ~~iT~R~LeSLIR--LseA~AKl~lr 311 (331)
T PF00493_consen 288 IPITIRQLESLIR--LSEAHAKLRLR 311 (331)
T ss_dssp B-SSCCCCCHHHH--HHHHHHHCTTS
T ss_pred cccchhhHHHHHH--HHHHHHHHhcc
Confidence 2345777776664 44445544443
No 342
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.85 E-value=0.00033 Score=67.21 Aligned_cols=76 Identities=26% Similarity=0.360 Sum_probs=59.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.-.+.||+|+|||+.+|.+++.+.. .++.++|+...+...+.+++- ++.. -++-++|||
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~----~~~vfnc~~~~~~~~l~ril~---------------G~~~--~GaW~cfde 92 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGR----FVVVFNCSEQMDYQSLSRILK---------------GLAQ--SGAWLCFDE 92 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT------EEEEETTSSS-HHHHHHHHH---------------HHHH--HT-EEEEET
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCC----eEEEecccccccHHHHHHHHH---------------HHhh--cCchhhhhh
Confidence 4568999999999999999998854 499999999988888888772 2222 256889999
Q ss_pred CCccCHHHHHHHHHhhc
Q psy1308 379 VDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 379 iek~~~~~~~~Ll~~~~ 395 (607)
+++++.+++..+.+.+.
T Consensus 93 fnrl~~~vLS~i~~~i~ 109 (231)
T PF12774_consen 93 FNRLSEEVLSVISQQIQ 109 (231)
T ss_dssp CCCSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 99999998888776554
No 343
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=7.7e-05 Score=73.40 Aligned_cols=107 Identities=13% Similarity=0.225 Sum_probs=65.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccc--ccccchhHhhhcCCCC-CccCCCCchhhHHHhhCC----C
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSE--YQEKHEVAKLIGAPPG-YLGHDDGGQLTKRLKKCP----N 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~--~~~~~~~~~llg~~~g-~~g~~~~~~l~~~~~~~~----~ 371 (607)
.++|.||.|+||..+|..+++.+.-.. .+. .|.. -..|.++..+.....+ .++-++-..+.+.+...| +
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~-~~~---~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKET-SPE---AAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCC-Ccc---HHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 688999999999999999999986531 110 1100 0011111111110010 112222223333333333 5
Q ss_pred eEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 372 ~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
-|++||++|+++++.++.||+.+|+- ..+++||+.|+.
T Consensus 97 kv~ii~~ad~mt~~AaNaLLK~LEEP-----------p~~~~fiL~~~~ 134 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLEDP-----------PQHGVIILTSAK 134 (290)
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcC-----------CCCeEEEEEeCC
Confidence 79999999999999999999999963 367788887774
No 344
>KOG0520|consensus
Probab=97.85 E-value=1.3e-05 Score=88.45 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy1308 85 IKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~ 147 (607)
+|.-.+|. |..++.+..-+++...+..++.+|..||||||||+..|+..++..|++.|++.+
T Consensus 607 d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~ 668 (975)
T KOG0520|consen 607 DGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPG 668 (975)
T ss_pred cCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccc
Confidence 33333444 334444444444443335566666666666666666666666666665555544
No 345
>KOG3609|consensus
Probab=97.83 E-value=6e-05 Score=81.70 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=97.3
Q ss_pred CCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhc
Q psy1308 29 FQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIEN 108 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 108 (607)
.+.--...||..|+.-.|+..++.... . ..+++..|.-|.++|+.|+.+.+.+++++|+++
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~-~------------------~lninc~d~lGr~al~iai~nenle~~eLLl~~ 84 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAV-S------------------KLNINCRDPLGRLALHIAIDNENLELQELLLDT 84 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccc-c------------------ccchhccChHhhhceecccccccHHHHHHHhcC
Confidence 344456789999999999888765433 1 123467788999999999999999999999997
Q ss_pred CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------CCCCCCchHHHHHHcCCccHHHHHHhcCCC
Q psy1308 109 SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP------------NLGDLFNTVHRTAAEKKMNPFEVLLKREDE 176 (607)
Q Consensus 109 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~------------~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~ 176 (607)
+ ... ..+|.+|+..|..++|++++.+-... ...-.-||+.+||..++.||+++|+.+|+.
T Consensus 85 ~-~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~ 156 (822)
T KOG3609|consen 85 S-SEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC 156 (822)
T ss_pred c-ccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence 6 433 34899999999999999999874332 112235799999999999999999999988
Q ss_pred cccc
Q psy1308 177 FNDV 180 (607)
Q Consensus 177 ~~~~ 180 (607)
+...
T Consensus 157 i~~P 160 (822)
T KOG3609|consen 157 IPIP 160 (822)
T ss_pred CCCC
Confidence 7654
No 346
>KOG0480|consensus
Probab=97.83 E-value=0.00026 Score=74.65 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=80.5
Q ss_pred ccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCC----CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc
Q psy1308 260 YPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDH----PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS 335 (607)
Q Consensus 260 ~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~----p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a 335 (607)
..|...+...+.|++....-+.-.+--.-...+.... .++++++|-||+||+-+.++....+++. -++.-..+
T Consensus 337 ~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~---vYtsGkaS 413 (764)
T KOG0480|consen 337 KNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS---VYTSGKAS 413 (764)
T ss_pred HHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc---eEecCccc
Confidence 3445555667888887776655444222111122222 3489999999999999999998887653 11111111
Q ss_pred cccccchhHhhhc-CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCC
Q psy1308 336 EYQEKHEVAKLIG-APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGK 403 (607)
Q Consensus 336 ~~~~~~~~~~llg-~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~ 403 (607)
.-.+ ..+.+.- ...| |+- -.+++--+.+||=.|||+||++..-|-+|.+.||...+...+
T Consensus 414 SaAG--LTaaVvkD~esgdf~i------EAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaK 475 (764)
T KOG0480|consen 414 SAAG--LTAAVVKDEESGDFTI------EAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAK 475 (764)
T ss_pred cccc--ceEEEEecCCCCceee------ecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehhee
Confidence 1110 0000100 0011 111 123455678899999999999999999999999988877654
No 347
>KOG0478|consensus
Probab=97.77 E-value=0.00017 Score=76.53 Aligned_cols=109 Identities=22% Similarity=0.326 Sum_probs=67.7
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCC-CCch---hhHHHhhCCCeE
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHD-DGGQ---LTKRLKKCPNAV 373 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~-~~~~---l~~~~~~~~~~v 373 (607)
..+|++|-||+||+.+.+.+++.+.+.- ++ .=.+...+ |- ..|+-.+ +.++ -.+++-.+.+|+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~---yT-----SGkGsSav----GL-TayVtrd~dtkqlVLesGALVLSD~Gi 529 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGV---YT-----SGKGSSAV----GL-TAYVTKDPDTRQLVLESGALVLSDNGI 529 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcce---ee-----cCCccchh----cc-eeeEEecCccceeeeecCcEEEcCCce
Confidence 5899999999999999999999875520 00 00010000 00 0011111 1111 234555678899
Q ss_pred EEEecCCccCHHHHHHHHHhhccceeecCCCcEEec--CceEEEEecC
Q psy1308 374 VLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIEC--KDAIFVMTSN 419 (607)
Q Consensus 374 l~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~--~~~~iI~tsn 419 (607)
=+|||+||++.+.++.|+++||..++...+.--+.. ..+=||++.|
T Consensus 530 CCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaAN 577 (804)
T KOG0478|consen 530 CCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAAN 577 (804)
T ss_pred EEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeec
Confidence 999999999999999999999988877653222222 2223566656
No 348
>KOG2384|consensus
Probab=97.76 E-value=6.9e-05 Score=66.62 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=63.9
Q ss_pred chhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy1308 78 TLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146 (607)
Q Consensus 78 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 146 (607)
.++..|..|||||++|+..|+.+.|.||+.+|-+++.++|..|.+++.+|=+.|+.++|+.|.+.-.+-
T Consensus 4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et 72 (223)
T KOG2384|consen 4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET 72 (223)
T ss_pred CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence 467899999999999999999999999999998899999999999999999999999999999874443
No 349
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.74 E-value=0.00018 Score=69.60 Aligned_cols=187 Identities=18% Similarity=0.276 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhh----
Q psy1308 271 VGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKL---- 346 (607)
Q Consensus 271 ~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~l---- 346 (607)
+|...-++.+...+.... ...+++.||.|+|||.+.+.+.+.+...+.. .+-++............+
T Consensus 2 ~gR~~el~~l~~~l~~~~--------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESGP--------SQHILLYGPRGSGKTSLLKEFINELKEKGYK-VVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT--EEC-CCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc--------CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc-EEEEecccchhhhHHHHHHHHH
Confidence 455666666666555432 2368899999999999999999877332111 111111111111111111
Q ss_pred ---------hcC-CCCCcc--------C---CCCchhhHHHhhC-CCeEEEEecCCccC------HHHHHHHHHhhccce
Q psy1308 347 ---------IGA-PPGYLG--------H---DDGGQLTKRLKKC-PNAVVLFDEVDKAH------PDVLTVLLQLFDEGR 398 (607)
Q Consensus 347 ---------lg~-~~g~~g--------~---~~~~~l~~~~~~~-~~~vl~lDEiek~~------~~~~~~Ll~~~~~~~ 398 (607)
++. .++..+ . ..-..+.+.+... ...+|+|||++.+. +.....|.++++...
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 211 111110 0 0011122333333 34899999999988 567777888777411
Q ss_pred eecCCCcEEecCceE-EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCC
Q psy1308 399 LTDGKGKTIECKDAI-FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRR 477 (607)
Q Consensus 399 ~~~~~g~~~~~~~~~-iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~ 477 (607)
...+.. |+++|.. .+... +... .
T Consensus 153 ---------~~~~~~~v~~~S~~---~~~~~------------------------------------------~~~~--~ 176 (234)
T PF01637_consen 153 ---------SQQNVSIVITGSSD---SLMEE------------------------------------------FLDD--K 176 (234)
T ss_dssp -----------TTEEEEEEESSH---HHHHH------------------------------------------TT-T--T
T ss_pred ---------ccCCceEEEECCch---HHHHH------------------------------------------hhcc--c
Confidence 123344 4444441 11110 0011 1
Q ss_pred hhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 478 DEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 478 ~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
+.+++|... +...|++.++..+++.....+. +.+.++++.++.+.
T Consensus 177 ~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~---------~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 177 SPLFGRFSH-IELKPLSKEEAREFLKELFKEL---------IKLPFSDEDIEEIY 221 (234)
T ss_dssp STTTT---E-EEE----HHHHHHHHHHHHHCC---------------HHHHHHHH
T ss_pred Cccccccce-EEEeeCCHHHHHHHHHHHHHHh---------hcccCCHHHHHHHH
Confidence 668889987 8899999999999887765432 22245777777664
No 350
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.72 E-value=0.00019 Score=72.67 Aligned_cols=110 Identities=21% Similarity=0.317 Sum_probs=65.0
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
-.++|+|++|+|||.|+.+++..+... ......+.+..+-. .+-.. .+............+..+ .+|+||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~~~l~~-----~l~~~--~~~~~~~~~~~~~~l~~~--DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTADELIE-----ILREI--RFNNDKELEEVYDLLINC--DLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEHHHHHH-----HHHHH--HhccchhHHHHHHHhccC--CEEEEe
Confidence 368999999999999999999987654 23333334333211 11100 000000000112333333 599999
Q ss_pred cCC--ccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 378 EVD--KAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 378 Eie--k~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+++ ..++..+..|+.+++...- .+.-+|+|||...+++.+
T Consensus 254 DlG~e~~t~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~el~~ 295 (329)
T PRK06835 254 DLGTEKITEFSKSELFNLINKRLL----------RQKKMIISTNLSLEELLK 295 (329)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHH
Confidence 994 4567788889998874321 112389999988877643
No 351
>KOG1969|consensus
Probab=97.70 E-value=0.00039 Score=74.56 Aligned_cols=87 Identities=26% Similarity=0.412 Sum_probs=56.0
Q ss_pred CCCCc--eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh-cCCCC--CccCCCCchhhHHHhh
Q psy1308 294 DDHPL--VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI-GAPPG--YLGHDDGGQLTKRLKK 368 (607)
Q Consensus 294 ~~~p~--~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll-g~~~g--~~g~~~~~~l~~~~~~ 368 (607)
..+|- .+|++||+|-|||.||..+|+... ...+.++.|.-...+.+.+-+ +.... ..+ ...
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAkqaG----YsVvEINASDeRt~~~v~~kI~~avq~~s~l~----------ads 386 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQAG----YSVVEINASDERTAPMVKEKIENAVQNHSVLD----------ADS 386 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHHhcC----ceEEEecccccccHHHHHHHHHHHHhhccccc----------cCC
Confidence 33444 899999999999999999998642 235556655544433332222 11000 000 012
Q ss_pred CCCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 369 CPNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 369 ~~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
.| .-|++||||-+++..++.|+.++.
T Consensus 387 rP-~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 387 RP-VCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred Cc-ceEEEecccCCcHHHHHHHHHHHH
Confidence 23 357789999999999999999887
No 352
>PRK06526 transposase; Provisional
Probab=97.69 E-value=7.1e-05 Score=73.06 Aligned_cols=106 Identities=26% Similarity=0.376 Sum_probs=63.6
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhh-CCCeEEEE
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK-CPNAVVLF 376 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~-~~~~vl~l 376 (607)
-.++++||+|+|||.++..++..+...+ ....-..++.+ +..+.... ..+.+...+.. ....+|+|
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g-~~v~f~t~~~l-----~~~l~~~~-------~~~~~~~~l~~l~~~dlLII 165 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAG-HRVLFATAAQW-----VARLAAAH-------HAGRLQAELVKLGRYPLLIV 165 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCC-CchhhhhHHHH-----HHHHHHHH-------hcCcHHHHHHHhccCCEEEE
Confidence 4689999999999999999988765431 11111112111 11221110 01112222222 34579999
Q ss_pred ecCCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 377 DEVDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 377 DEiek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
||++..+ +..++.|.++++... .+.-+|+|||.......+
T Consensus 166 DD~g~~~~~~~~~~~L~~li~~r~-----------~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 166 DEVGYIPFEPEAANLFFQLVSSRY-----------ERASLIVTSNKPFGRWGE 207 (254)
T ss_pred cccccCCCCHHHHHHHHHHHHHHH-----------hcCCEEEEcCCCHHHHHH
Confidence 9999764 777888999887321 112388999998887654
No 353
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.64 E-value=0.00031 Score=67.92 Aligned_cols=108 Identities=17% Similarity=0.280 Sum_probs=65.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCC-CCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHD-DGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~-~~~~l~~~~~~~~~~vl~lD 377 (607)
.++|+|++|+|||.|+.+++..+... ......++.+.+. ..+-.. |...+ ....+...+. ...+|+||
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it~~~l~-----~~l~~~---~~~~~~~~~~~l~~l~--~~dlLvID 169 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITVADIM-----SAMKDT---FSNSETSEEQLLNDLS--NVDLLVID 169 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEHHHHH-----HHHHHH---HhhccccHHHHHHHhc--cCCEEEEe
Confidence 68999999999999999999988654 3334444443321 111110 10000 1112223333 35699999
Q ss_pred cCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 378 EVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 378 Eiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
|++..... ....|.++++.. +. .+.-.|+|||+..+++.+
T Consensus 170 Dig~~~~s~~~~~~l~~Ii~~R-y~---------~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 170 EIGVQTESRYEKVIINQIVDRR-SS---------SKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-Hh---------CCCCEEEeCCCCHHHHHH
Confidence 99876433 445677888742 11 123489999999888754
No 354
>PF05729 NACHT: NACHT domain
Probab=97.61 E-value=0.00066 Score=61.72 Aligned_cols=111 Identities=18% Similarity=0.223 Sum_probs=62.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCc-----eEEeecccccccc---hhHhhhcCCCCCccCCCCchhhHHHhhCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEA-----FIRLDMSEYQEKH---EVAKLIGAPPGYLGHDDGGQLTKRLKKCP 370 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~-----~~~l~~a~~~~~~---~~~~llg~~~g~~g~~~~~~l~~~~~~~~ 370 (607)
.+++.|++|+|||.+++.++..+......+ ...+.+....... .+..++..............+.......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998875532211 2233444444332 23334421111111011112345566778
Q ss_pred CeEEEEecCCccCHHHH--------HHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 371 NAVVLFDEVDKAHPDVL--------TVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~~--------~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
..+++||.+|.+..... +.|.+++... ...++.+|+||.
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~liit~r 128 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA----------LPPGVKLIITSR 128 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc----------cCCCCeEEEEEc
Confidence 89999999999877433 3455566531 123455666665
No 355
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0014 Score=65.36 Aligned_cols=92 Identities=16% Similarity=0.282 Sum_probs=60.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-------CCc--eEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHh--
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-------KEA--FIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLK-- 367 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-------~~~--~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~-- 367 (607)
.++|.|+.|.||..+++.+++.+.... ..| ++.++-. + +..+. .++..+++
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g------------~~i~v---d~Ir~l~~~~ 81 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---D------------KDLSK---SEFLSAINKL 81 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---C------------CcCCH---HHHHHHHHHh
Confidence 688999999999999999999873311 111 1112100 0 00000 11212111
Q ss_pred ------hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 368 ------KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 368 ------~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
..++-|+++|++|+++...++.||+.+|+- ..+++||++|+
T Consensus 82 ~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP-----------p~~t~~il~~~ 128 (299)
T PRK07132 82 YFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEP-----------PKDTYFLLTTK 128 (299)
T ss_pred ccCCcccCCceEEEEecccccCHHHHHHHHHHhhCC-----------CCCeEEEEEeC
Confidence 135679999999999999999999999963 36778888776
No 356
>KOG0741|consensus
Probab=97.60 E-value=0.00071 Score=69.90 Aligned_cols=69 Identities=26% Similarity=0.481 Sum_probs=48.1
Q ss_pred Cc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee----cccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCC
Q psy1308 297 PL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD----MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPN 371 (607)
Q Consensus 297 p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~----~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~ 371 (607)
|+ ++++.||+|+|||.||..+|... .-||+.+- |..+++..-+.-+- ...+-..+.+-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~miG~sEsaKc~~i~-------------k~F~DAYkS~l 599 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMIGLSESAKCAHIK-------------KIFEDAYKSPL 599 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHccCccHHHHHHHHH-------------HHHHHhhcCcc
Confidence 55 89999999999999999999653 66788873 33443333222111 12334456788
Q ss_pred eEEEEecCCcc
Q psy1308 372 AVVLFDEVDKA 382 (607)
Q Consensus 372 ~vl~lDEiek~ 382 (607)
+++++|+||++
T Consensus 600 siivvDdiErL 610 (744)
T KOG0741|consen 600 SIIVVDDIERL 610 (744)
T ss_pred eEEEEcchhhh
Confidence 99999999985
No 357
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.54 E-value=0.00016 Score=60.63 Aligned_cols=98 Identities=27% Similarity=0.407 Sum_probs=58.9
Q ss_pred eeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecC
Q psy1308 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEV 379 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi 379 (607)
+.+.|++|+|||.+++.|++.+...-..+. ....|.. ....+++ .||.| ..++++||+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~---~~~vy~~-~~~~~~w---~gY~~---------------q~vvi~DD~ 58 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT---KDSVYTR-NPGDKFW---DGYQG---------------QPVVIIDDF 58 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC---CCcEEeC-CCccchh---hccCC---------------CcEEEEeec
Confidence 468999999999999999988754210000 0001110 0011111 22332 248999999
Q ss_pred CccCHH----HHHHHHHhhccceeecC----CCcEEecCceEEEEecC
Q psy1308 380 DKAHPD----VLTVLLQLFDEGRLTDG----KGKTIECKDAIFVMTSN 419 (607)
Q Consensus 380 ek~~~~----~~~~Ll~~~~~~~~~~~----~g~~~~~~~~~iI~tsn 419 (607)
...... ....|+++++...+... ..+...|.-.+||+|||
T Consensus 59 ~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 59 GQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred CccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
Confidence 988754 67778888886665542 12224556678899998
No 358
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0004 Score=66.85 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=66.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh-cCCCC---------CccCCCCchhhHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI-GAPPG---------YLGHDDGGQLTKRL 366 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll-g~~~g---------~~g~~~~~~l~~~~ 366 (607)
|-.++|.|+.|+||..+|..+++.+.-....+ .|..- .....+. |..|. .++-++-..+...+
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~----~Cg~C---~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l 79 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANG----FCKTC---ESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKL 79 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCC----CCCCC---HHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 34789999999999999999999875432111 12111 1111111 11111 12222222333333
Q ss_pred hh-----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 367 KK-----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 367 ~~-----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
.. +++-|++++++|+++.+..+.||+.+|+. ..+++||++|+
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEP-----------p~~t~fiLit~ 126 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEP-----------PKNTYGIFTTR 126 (261)
T ss_pred ccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCC-----------CCCeEEEEEEC
Confidence 22 23679999999999999999999999964 36788998887
No 359
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00053 Score=67.02 Aligned_cols=109 Identities=21% Similarity=0.300 Sum_probs=68.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHh-hCCCeEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLK-KCPNAVVL 375 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~-~~~~~vl~ 375 (607)
+-.++|+|++|+|||.|+-+|+..+... .....-+.++.+ +.++-.+.. .+..-..+.+ -....+|+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el-----~~~Lk~~~~------~~~~~~~l~~~l~~~dlLI 172 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDL-----LSKLKAAFD------EGRLEEKLLRELKKVDLLI 172 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHH-----HHHHHHHHh------cCchHHHHHHHhhcCCEEE
Confidence 4579999999999999999999998732 444444555443 223322111 1111122233 34456999
Q ss_pred EecCCcc--CHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 376 FDEVDKA--HPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 376 lDEiek~--~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
|||+... +....+.+++++..-.- +... |+|||....++.+.
T Consensus 173 iDDlG~~~~~~~~~~~~~q~I~~r~~----------~~~~-~~tsN~~~~~~~~~ 216 (254)
T COG1484 173 IDDIGYEPFSQEEADLLFQLISRRYE----------SRSL-IITSNLSFGEWDEL 216 (254)
T ss_pred EecccCccCCHHHHHHHHHHHHHHHh----------hccc-eeecCCChHHHHhh
Confidence 9999884 44466778887763221 1223 99999999887654
No 360
>PRK08181 transposase; Validated
Probab=97.51 E-value=0.00024 Score=69.80 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=63.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.++|+||+|+|||.|+.+++..+... ......+.+..+ +..+-..... .........+. ...+|+|||
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~~~~L-----~~~l~~a~~~----~~~~~~l~~l~--~~dLLIIDD 175 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTRTTDL-----VQKLQVARRE----LQLESAIAKLD--KFDLLILDD 175 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeeeHHHH-----HHHHHHHHhC----CcHHHHHHHHh--cCCEEEEec
Confidence 68999999999999999999877543 222333333222 1122110000 00011222222 346999999
Q ss_pred CCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 379 VDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 379 iek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
++..+. ..+..|+++++... . +.-+|+|||....++.+
T Consensus 176 lg~~~~~~~~~~~Lf~lin~R~-~----------~~s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 176 LAYVTKDQAETSVLFELISARY-E----------RRSILITANQPFGEWNR 215 (269)
T ss_pred cccccCCHHHHHHHHHHHHHHH-h----------CCCEEEEcCCCHHHHHH
Confidence 987644 45678999987321 1 11289999999888755
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.49 E-value=0.00084 Score=67.45 Aligned_cols=109 Identities=18% Similarity=0.282 Sum_probs=65.5
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
..++|+|++|+|||.|+.+++..+... ......+.+..+-.. +...++. ..-......+. .-.+|+||
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~~~~l~~~--lk~~~~~-------~~~~~~l~~l~--~~dlLiID 224 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLHFPEFIRE--LKNSISD-------GSVKEKIDAVK--EAPVLMLD 224 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEEHHHHHHH--HHHHHhc-------CcHHHHHHHhc--CCCEEEEe
Confidence 378999999999999999999998654 334444555433211 1222211 01112233333 34699999
Q ss_pred cCCcc--CHHHHHHHHH-hhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 378 EVDKA--HPDVLTVLLQ-LFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 378 Eiek~--~~~~~~~Ll~-~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
|++.- ++-+.+.++. +++. ++. .+.-.|+|||+..+++.++
T Consensus 225 DiG~e~~s~~~~~~ll~~Il~~-R~~---------~~~~ti~TSNl~~~el~~~ 268 (306)
T PRK08939 225 DIGAEQMSSWVRDEVLGVILQY-RMQ---------EELPTFFTSNFDFDELEHH 268 (306)
T ss_pred cCCCccccHHHHHHHHHHHHHH-HHH---------CCCeEEEECCCCHHHHHHH
Confidence 99754 4445544555 4442 111 2234899999999988764
No 362
>KOG0990|consensus
Probab=97.49 E-value=0.00052 Score=66.81 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=71.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.+++|++.+..+.+.. ..+.-| +.+|+||+|+|||......+..++.. +....-+.++..
T Consensus 42 dv~~~~ei~st~~~~~-------~~~~lP-h~L~YgPPGtGktsti~a~a~~ly~~------------~~~~~m~lelna 101 (360)
T KOG0990|consen 42 IVIKQEPIWSTENRYS-------GMPGLP-HLLFYGPPGTGKTSTILANARDFYSP------------HPTTSMLLELNA 101 (360)
T ss_pred hHhcCCchhhHHHHhc-------cCCCCC-cccccCCCCCCCCCchhhhhhhhcCC------------CCchhHHHHhhc
Confidence 4667777776655441 112223 89999999999999999999888663 111111222221
Q ss_pred CCCCCccCCCC-chhhHHHh-------hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 349 APPGYLGHDDG-GQLTKRLK-------KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 349 ~~~g~~g~~~~-~~l~~~~~-------~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
+.+.-.+-... -.+....+ .+..-.+++||.|.+..+.|++|-+.++.- ..|++|+..+|.
T Consensus 102 Sd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~-----------t~n~rF~ii~n~ 170 (360)
T KOG0990|consen 102 SDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKY-----------TANTRFATISNP 170 (360)
T ss_pred cCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHh-----------ccceEEEEeccC
Confidence 11110110000 01111111 124668999999999999999999977632 257788877773
No 363
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.48 E-value=0.00014 Score=67.12 Aligned_cols=107 Identities=23% Similarity=0.330 Sum_probs=63.5
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
..++|.|++|+|||.+|.+++..+... .....-++++.+ +.++-.. +. ......+...+... .+|+||
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~~~L-----~~~l~~~---~~-~~~~~~~~~~l~~~--dlLilD 115 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITASDL-----LDELKQS---RS-DGSYEELLKRLKRV--DLLILD 115 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEHHHH-----HHHHHCC---HC-CTTHCHHHHHHHTS--SCEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeecCce-----ecccccc---cc-ccchhhhcCccccc--cEeccc
Confidence 479999999999999999999877554 333333443332 2222211 10 01112334444443 599999
Q ss_pred cCCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 378 EVDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 378 Eiek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
|+...+ ....+.|.++++... .+.-.|+|||...+++.+
T Consensus 116 DlG~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~~l~~ 156 (178)
T PF01695_consen 116 DLGYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPSELEE 156 (178)
T ss_dssp TCTSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HHHHHT
T ss_pred ccceeeecccccccchhhhhHhh-----------cccCeEeeCCCchhhHhh
Confidence 997754 556677888887432 111367799999888755
No 364
>KOG0735|consensus
Probab=97.45 E-value=0.0031 Score=67.60 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=104.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh--HhhhcCCCCCccCCCCchhhHHHhhCCCeEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV--AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVV 374 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~--~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl 374 (607)
+-.+++.||+|+|||.|++++..++..+..--+..++|+...+.... .+++ ...+...++.+ .+||
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------~~vfse~~~~~-PSiI 498 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFL-----------NNVFSEALWYA-PSII 498 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHH-----------HHHHHHHHhhC-CcEE
Confidence 34799999999999999999999987554445667899988775421 2222 11233444444 4799
Q ss_pred EEecCCccCH---------HHHH-----HHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccc
Q psy1308 375 LFDEVDKAHP---------DVLT-----VLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFS 440 (607)
Q Consensus 375 ~lDEiek~~~---------~~~~-----~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~ 440 (607)
+||++|-+-. .++. +|-+++.. ..+ +-+.+.||+|++ ....++.
T Consensus 499 vLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~-y~~-------~~~~ia~Iat~q-e~qtl~~------------- 556 (952)
T KOG0735|consen 499 VLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKI-YLK-------RNRKIAVIATGQ-ELQTLNP------------- 556 (952)
T ss_pred EEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHH-HHc-------cCcEEEEEEech-hhhhcCh-------------
Confidence 9999887522 1222 22233321 001 112356777766 1111111
Q ss_pred cCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcE
Q psy1308 441 KRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNIN 520 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~ 520 (607)
.| +. |- +|+.++...++...+-.+|+...+......
T Consensus 557 -----------------------------~L---~s-~~---~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~-------- 592 (952)
T KOG0735|consen 557 -----------------------------LL---VS-PL---LFQIVIALPAPAVTRRKEILTTIFSKNLSD-------- 592 (952)
T ss_pred -----------------------------hh---cC-cc---ceEEEEecCCcchhHHHHHHHHHHHhhhhh--------
Confidence 01 11 22 567788888889999999987777543211
Q ss_pred EEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHH
Q psy1308 521 IVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAH 560 (607)
Q Consensus 521 l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~ 560 (607)
....-+++++. -...+-++-|.-.++|++...+.+.+
T Consensus 593 --~~~~dLd~ls~-~TEGy~~~DL~ifVeRai~~a~leri 629 (952)
T KOG0735|consen 593 --ITMDDLDFLSV-KTEGYLATDLVIFVERAIHEAFLERI 629 (952)
T ss_pred --hhhHHHHHHHH-hcCCccchhHHHHHHHHHHHHHHHHh
Confidence 12334555642 11223345677777877777664443
No 365
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.42 E-value=0.00023 Score=62.10 Aligned_cols=97 Identities=21% Similarity=0.346 Sum_probs=62.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccC----cCCceEEeecccccccchh----HhhhcCCCCC--ccCCCCchhhHHHhh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRD----KKEAFIRLDMSEYQEKHEV----AKLIGAPPGY--LGHDDGGQLTKRLKK 368 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~----~~~~~~~l~~a~~~~~~~~----~~llg~~~g~--~g~~~~~~l~~~~~~ 368 (607)
.++++|++|+|||.+++.+++.+... ...+++.+++......... ...++.+... ...+-...+...++.
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 68899999999999999999886431 0334667777665533332 3333432221 000111235556666
Q ss_pred CCCeEEEEecCCcc-CHHHHHHHHHhhc
Q psy1308 369 CPNAVVLFDEVDKA-HPDVLTVLLQLFD 395 (607)
Q Consensus 369 ~~~~vl~lDEiek~-~~~~~~~Ll~~~~ 395 (607)
....+|+|||++.+ +.++.+.|..+++
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 66679999999999 9999999988877
No 366
>KOG0730|consensus
Probab=97.40 E-value=0.0012 Score=70.40 Aligned_cols=102 Identities=24% Similarity=0.321 Sum_probs=64.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCC-CeEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCP-NAVVL 375 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~-~~vl~ 375 (607)
|..++++||+|+|||.+++++++..... +..++.. .-++++.|....+. ....+...... .+++|
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~~a~----~~~i~~p-----eli~k~~gEte~~L-----R~~f~~a~k~~~psii~ 283 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEYGAF----LFLINGP-----ELISKFPGETESNL-----RKAFAEALKFQVPSIIF 283 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHhCce----eEecccH-----HHHHhcccchHHHH-----HHHHHHHhccCCCeeEe
Confidence 4478899999999999999999765321 4444433 22444544221110 11222233333 89999
Q ss_pred EecCCccCH----------HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcc
Q psy1308 376 FDEVDKAHP----------DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLA 421 (607)
Q Consensus 376 lDEiek~~~----------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~ 421 (607)
+||++.+-| .+...|+.+++.-. .-.++++|.++|..
T Consensus 284 IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~---------~~~~vivl~atnrp 330 (693)
T KOG0730|consen 284 IDELDALCPKREGADDVESRVVSQLLTLLDGLK---------PDAKVIVLAATNRP 330 (693)
T ss_pred HHhHhhhCCcccccchHHHHHHHHHHHHHhhCc---------CcCcEEEEEecCCc
Confidence 999998765 46778888887322 22577899998843
No 367
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=0.00063 Score=66.84 Aligned_cols=106 Identities=23% Similarity=0.309 Sum_probs=62.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHh--hCCCeEEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLK--KCPNAVVLF 376 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~--~~~~~vl~l 376 (607)
.++++||+|+|||.++..++...... ......+++..+. ..+-.. + ..+.+...+. .....+++|
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~-G~~v~~~~~~~l~-----~~l~~a---~----~~~~~~~~~~~~~~~~dlLii 170 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRA-GIKVRFTTAADLL-----LQLSTA---Q----RQGRYKTTLQRGVMAPRLLII 170 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeHHHHH-----HHHHHH---H----HCCcHHHHHHHHhcCCCEEEE
Confidence 68899999999999999998765433 2222233322221 111100 0 0011112221 234569999
Q ss_pred ecCCcc--CHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 377 DEVDKA--HPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 377 DEiek~--~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
||++.. +...++.|+++++... . .. -+|+|||.....+.+.
T Consensus 171 Ddlg~~~~~~~~~~~lf~li~~r~-~---------~~-s~iiTsn~~~~~w~~~ 213 (259)
T PRK09183 171 DEIGYLPFSQEEANLFFQVIAKRY-E---------KG-SMILTSNLPFGQWDQT 213 (259)
T ss_pred cccccCCCChHHHHHHHHHHHHHH-h---------cC-cEEEecCCCHHHHHHH
Confidence 999874 4556668899886421 0 11 2789999998887653
No 368
>KOG2505|consensus
Probab=97.38 E-value=0.0004 Score=70.64 Aligned_cols=75 Identities=25% Similarity=0.423 Sum_probs=60.4
Q ss_pred ccHHHHHHhcCCCccccCC-CCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHH
Q psy1308 164 MNPFEVLLKREDEFNDVLN-PNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQIL 238 (607)
Q Consensus 164 ~~~~~~Ll~~g~~~~~~~~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~ 238 (607)
...+++|.+++.+.|.... ...++.-.|+||||+..|..++|.+||+.||||..+|..|+||..++.......+.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F 479 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIF 479 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHH
Confidence 5678888888887765432 22355578999999999999999999999999999999999999998855444433
No 369
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.36 E-value=0.0014 Score=75.81 Aligned_cols=149 Identities=25% Similarity=0.393 Sum_probs=99.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchh----hHHHhhC-CCeE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQL----TKRLKKC-PNAV 373 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l----~~~~~~~-~~~v 373 (607)
++++-|.||+|||.+..++|+....+ +++++.+..++ ...|||+... .+++|.+ ...+++. .++-
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~k----liRINLSeQTd---L~DLfGsd~P---ve~~Gef~w~dapfL~amr~G~W 1614 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKK----LIRINLSEQTD---LCDLFGSDLP---VEEGGEFRWMDAPFLHAMRDGGW 1614 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCc----eEEeeccccch---HHHHhCCCCC---cccCceeEecccHHHHHhhcCCE
Confidence 58899999999999999999887444 99999998764 7788987322 1233332 2333333 4789
Q ss_pred EEEecCCccCHHHHHHHHHhhccce--eecCCCcEEec-CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCccccc
Q psy1308 374 VLFDEVDKAHPDVLTVLLQLFDEGR--LTDGKGKTIEC-KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQ 450 (607)
Q Consensus 374 l~lDEiek~~~~~~~~Ll~~~~~~~--~~~~~g~~~~~-~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (607)
|++||+.-++.+|+.-|=..++... +...-..+.++ -|.++.++-|-. .+ ..|
T Consensus 1615 VlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq-~q---------ggG-------------- 1670 (4600)
T COG5271 1615 VLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQ-DQ---------GGG-------------- 1670 (4600)
T ss_pred EEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCch-hc---------CCC--------------
Confidence 9999999999999999888887432 11122334444 355566666611 10 000
Q ss_pred CCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHH
Q psy1308 451 GSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCR 504 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~ 504 (607)
.+.+ +..|++||+. |.-.-|+.+|+..|+..
T Consensus 1671 ---------------------RKgL-PkSF~nRFsv-V~~d~lt~dDi~~Ia~~ 1701 (4600)
T COG5271 1671 ---------------------RKGL-PKSFLNRFSV-VKMDGLTTDDITHIANK 1701 (4600)
T ss_pred ---------------------cccC-CHHHhhhhhe-EEecccccchHHHHHHh
Confidence 0112 3779999954 45567888888888765
No 370
>KOG1514|consensus
Probab=97.27 E-value=0.0039 Score=66.95 Aligned_cols=186 Identities=18% Similarity=0.228 Sum_probs=113.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccC----c--CCceEEeecccccccchhHhhhcCCCCCccCCCCch-----hhHHH-
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRD----K--KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQ-----LTKRL- 366 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~----~--~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~-----l~~~~- 366 (607)
.+.+.|-+|+|||..+..+-+.+... . .-.++.+|.-.+....++-..+. ..+.|...... +...+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~--~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIW--EALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHH--HhcccCcccHHHHHHHHHHhhc
Confidence 67889999999999998888866421 1 34566666666555555433221 11222222111 11111
Q ss_pred ---hhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCC
Q psy1308 367 ---KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRT 443 (607)
Q Consensus 367 ---~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~ 443 (607)
...+.+||++||.|-+=..-|+.|..+++ +.+.. -++.+||+.+|.-.- -
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd--Wpt~~------~sKLvvi~IaNTmdl--P----------------- 554 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQDVLYNIFD--WPTLK------NSKLVVIAIANTMDL--P----------------- 554 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccHHHHHHHhc--CCcCC------CCceEEEEecccccC--H-----------------
Confidence 23447899999999998888999999997 22222 256677777772110 0
Q ss_pred CCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccc-eeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEE
Q psy1308 444 PSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE-IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIV 522 (607)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~-iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~ 522 (607)
+++ +. +---+|+.- -+.|.|++..++.+|+..-|..+ -.
T Consensus 555 --------------------Er~--------l~-nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----------~~ 594 (767)
T KOG1514|consen 555 --------------------ERL--------LM-NRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----------DA 594 (767)
T ss_pred --------------------HHH--------hc-cchhhhccceeeecCCCCHHHHHHHHHHhhcch-----------hh
Confidence 000 11 223344543 47999999999999988777543 23
Q ss_pred eCHhHHHHHHc-cCCCCCCccchhHHHHHHHH
Q psy1308 523 WDIDVETILAD-GYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 523 ~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~ 553 (607)
++..|+++.++ --...+.+|.-..+++++++
T Consensus 595 f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 595 FENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred cchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 47778888775 34456777777667766554
No 371
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.19 E-value=0.023 Score=58.02 Aligned_cols=45 Identities=31% Similarity=0.475 Sum_probs=33.2
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCc--CCceEEeecccccc
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDK--KEAFIRLDMSEYQE 339 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~--~~~~~~l~~a~~~~ 339 (607)
..|.++.+.|+-|+|||.+.+.+-+.+.... ...++.+|.-.+.+
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~ 64 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDG 64 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCC
Confidence 4477999999999999999999999886641 33455555544544
No 372
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.16 E-value=0.0052 Score=61.62 Aligned_cols=147 Identities=24% Similarity=0.314 Sum_probs=92.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc------
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH------ 341 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~------ 341 (607)
..+.|.+..+..+...++....+.... ...++|+||+|+|||++++.|.+.+..- ++..+.-+...++.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~--krIl~L~GPvg~GKSsl~~~Lk~~le~y---~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEER--KRILLLLGPVGGGKSSLAELLKRGLEEY---PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCcc--ceEEEEECCCCCCHHHHHHHHHHHhheE---EEEEecCCccccChhhhCCH
Confidence 468999999999999988887775432 2378999999999999999999876331 12221111111100
Q ss_pred ---------------------hhHhh---hcC-----------------------CCCCccCCCCchh------------
Q psy1308 342 ---------------------EVAKL---IGA-----------------------PPGYLGHDDGGQL------------ 362 (607)
Q Consensus 342 ---------------------~~~~l---lg~-----------------------~~g~~g~~~~~~l------------ 362 (607)
...+| ++. .|+.....+...+
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~ 215 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEY 215 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhh
Confidence 00001 000 1111111111111
Q ss_pred ----------hHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 363 ----------TKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 363 ----------~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
.+.+..+++|++=|-|+-|.+.+.+..||.+.++|.+.-.++.....-+.+||..||
T Consensus 216 s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~~~~~i~~D~liiAhsN 282 (358)
T PF08298_consen 216 SESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVDEDFGMIPFDELIIAHSN 282 (358)
T ss_pred ccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecCCcccccccceeEEecCC
Confidence 123444567888888999999999999999999999887433322345678999999
No 373
>PRK06921 hypothetical protein; Provisional
Probab=97.13 E-value=0.0012 Score=65.04 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=60.6
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
-.++|+|++|+|||.|+.+++..+..........+..... ...+-. .+ +........+. .-.+|+||
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l-----~~~l~~---~~---~~~~~~~~~~~--~~dlLiID 184 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG-----FGDLKD---DF---DLLEAKLNRMK--KVEVLFID 184 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH-----HHHHHH---HH---HHHHHHHHHhc--CCCEEEEe
Confidence 3689999999999999999999875431122222222111 111100 00 00001112222 34699999
Q ss_pred cCCc-------cCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 378 EVDK-------AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 378 Eiek-------~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
|++. ...-.+..|..+++... . .+.-+|+|||....++..
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~-~---------~~k~tIitsn~~~~el~~ 231 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRY-L---------NHKPILISSELTIDELLD 231 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHHhh
Confidence 9943 44555677888886321 1 111268899998887753
No 374
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.01 E-value=0.0075 Score=70.27 Aligned_cols=109 Identities=29% Similarity=0.460 Sum_probs=77.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCC------chhhHHHhhCCCe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG------GQLTKRLKKCPNA 372 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~------~~l~~~~~~~~~~ 372 (607)
++++.||+.+|||.+...+|+....+ |++++--+ |.+..+++|. |+..+.| |.+.+++++. -
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghk----fVRINNHE---HTdlqeYiGT---yvTdd~G~lsFkEGvLVeAlR~G--y 957 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHK----FVRINNHE---HTDLQEYIGT---YVTDDDGSLSFKEGVLVEALRRG--Y 957 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCcc----EEEecCcc---cchHHHHhhc---eeecCCCceeeehhHHHHHHhcC--c
Confidence 78999999999999999999987554 99998644 4457788874 3333333 4567777654 4
Q ss_pred EEEEecCCccCHHHHHHHHHhhccce-eecCCC-cEEe-cCceEEEEecC
Q psy1308 373 VVLFDEVDKAHPDVLTVLLQLFDEGR-LTDGKG-KTIE-CKDAIFVMTSN 419 (607)
Q Consensus 373 vl~lDEiek~~~~~~~~Ll~~~~~~~-~~~~~g-~~~~-~~~~~iI~tsn 419 (607)
-|++||..-+|.+|+.+|=+++++.+ +..+.. ..+. --+.++.+|-|
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 78999999999999999999998654 333322 2232 34455555655
No 375
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.01 E-value=0.0012 Score=39.69 Aligned_cols=28 Identities=54% Similarity=0.870 Sum_probs=20.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy1308 120 GWTPLHVAAINGKVDNVRVLLEAGANPN 147 (607)
Q Consensus 120 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~ 147 (607)
|.||||+|+..++.+++++|++.|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 6677777777777777777777776654
No 376
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.88 E-value=0.033 Score=60.08 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=38.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.++.+..-++.+...+.....+. .....+++.||+|+|||..++.|++.+..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~---~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGS---SPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccC---CCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35566777888888777654332 12237899999999999999999999744
No 377
>PHA01747 putative ATP-dependent protease
Probab=96.86 E-value=0.0099 Score=59.43 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=71.8
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCC-CccCCCCchhhHHHhhCCCeEE
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG-YLGHDDGGQLTKRLKKCPNAVV 374 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g-~~g~~~~~~l~~~~~~~~~~vl 374 (607)
++.+++=.||.|||||.+-+.+.+..+. .. ..+...+++||..... ..| ++ ....+|
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~------~i-----SGG~~TvA~LFyN~~t~~~G---------LV--g~~D~V 246 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNF------RY-----YTEPPTYANLVYDAKTNALG---------LV--FLSNGL 246 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCc------ee-----eCCCCchHHheEecCCCcee---------EE--eeccEE
Confidence 4668899999999999999988653221 11 3345556777743211 111 11 124589
Q ss_pred EEecCCccC----HHHHHHHHHhhccceeecCCCcEE----ecCceEEEEecCcchH
Q psy1308 375 LFDEVDKAH----PDVLTVLLQLFDEGRLTDGKGKTI----ECKDAIFVMTSNLASN 423 (607)
Q Consensus 375 ~lDEiek~~----~~~~~~Ll~~~~~~~~~~~~g~~~----~~~~~~iI~tsn~~~~ 423 (607)
.||||.... .++...|...|++|.++++.+... -..++=+||..|....
T Consensus 247 aFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~ 303 (425)
T PHA01747 247 IFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSS 303 (425)
T ss_pred EEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCc
Confidence 999999864 578899999999999999875322 1236678999997643
No 378
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.83 E-value=0.0016 Score=39.13 Aligned_cols=28 Identities=50% Similarity=0.697 Sum_probs=25.0
Q ss_pred CcchhhHHHhcCCHHHHHHHHhcCCCCC
Q psy1308 189 GFSALHYGVVAGNTEVVELLLKSGADPT 216 (607)
Q Consensus 189 g~TpLh~A~~~g~~~~v~~Ll~~gad~~ 216 (607)
|.||+|+|+..++.+++++|+++|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 7899999999999999999999988764
No 379
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.72 E-value=0.011 Score=59.27 Aligned_cols=125 Identities=21% Similarity=0.288 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccch----hHhhhcC
Q psy1308 275 SAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHE----VAKLIGA 349 (607)
Q Consensus 275 ~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~----~~~llg~ 349 (607)
..++.+...+.... .....+.++|++|+|||.+|+.+++...... -+..+-++.+....... +...++.
T Consensus 3 ~~~~~l~~~L~~~~------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHHTTT------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhCCC------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 34555555555432 1234899999999999999999887632211 22333344443332222 2333443
Q ss_pred CCCCc-cCCCC----chhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 350 PPGYL-GHDDG----GQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 350 ~~g~~-g~~~~----~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
...-. ..... ..+.+.+... ..+++||+++... .++.|...+... -.++.||+||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~~--~~~~l~~~~~~~-----------~~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDK-RCLLVLDDVWDEE--DLEELREPLPSF-----------SSGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SHH--HH-------HCH-----------HSS-EEEEEES
T ss_pred cccccccccccccccccchhhhccc-cceeeeeeecccc--cccccccccccc-----------ccccccccccc
Confidence 32111 11111 1233334333 8999999988554 333333333211 12556888887
No 380
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.71 E-value=0.0079 Score=61.92 Aligned_cols=100 Identities=28% Similarity=0.362 Sum_probs=65.2
Q ss_pred ceeeeeccCCCChhHHHHHHHHH-hccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFY-IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~-l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
..+++.||+|||||.++..+..+ .... .+|+ ..++|+..-.. ...+. -....+|+|
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~s--G~f~-----------T~a~Lf~~L~~--------~~lg~--v~~~DlLI~ 266 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILIS--GGTI-----------TVAKLFYNIST--------RQIGL--VGRWDVVAF 266 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHc--CCcC-----------cHHHHHHHHHH--------HHHhh--hccCCEEEE
Confidence 36889999999999999998866 2222 1121 13333321000 11111 123569999
Q ss_pred ecCCccC----HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcch
Q psy1308 377 DEVDKAH----PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLAS 422 (607)
Q Consensus 377 DEiek~~----~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~ 422 (607)
||+..++ .+.+..|...|++|.++.+.. .-..++=++|..|+..
T Consensus 267 DEvgylp~~~~~~~v~imK~yMesg~fsRG~~--~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 267 DEVATLKFAKPKELIGILKNYMESGSFTRGDE--TKSSDASFVFLGNVPL 314 (449)
T ss_pred EcCCCCcCCchHHHHHHHHHHHHhCceeccce--eeeeeeEEEEEcccCC
Confidence 9999854 347788888999999998543 3346788999999764
No 381
>PRK10536 hypothetical protein; Provisional
Probab=96.70 E-value=0.01 Score=57.29 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=53.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCch----------------h
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQ----------------L 362 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~----------------l 362 (607)
.+++.|++|||||.++.+++......+. +..+-++.- .....+.+|.-||.....-... +
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP--~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~ 151 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRP--VLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFM 151 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCC--CCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 5778999999999999999875321112 332222211 1112344454444221110000 0
Q ss_pred ---------------hHHHhhC--CCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 363 ---------------TKRLKKC--PNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 363 ---------------~~~~~~~--~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
...++.. +.++|++||+..+++.....++.-+.
T Consensus 152 ~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g 201 (262)
T PRK10536 152 QYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLG 201 (262)
T ss_pred HHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcC
Confidence 0112222 25899999999999998888887765
No 382
>KOG0477|consensus
Probab=96.66 E-value=0.0054 Score=64.74 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=84.2
Q ss_pred HhHhhhhHHHHHHHHHHHHHhhCCCCCCC----CCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEeecccccc
Q psy1308 267 KDRIVGQESAINIISAAIKRKENGWTDDD----HPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRLDMSEYQE 339 (607)
Q Consensus 267 ~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~----~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l~~a~~~~ 339 (607)
...+.|.......+..++-.......... .-..+|++|-||+||+.+.|.+++..++.- ..+-..+-...+..
T Consensus 448 aPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 448 APSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred CchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 34567777777766666543332222221 234899999999999999999998765420 11111222222211
Q ss_pred cchhH-hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCC-Cc-EEecCceEEEE
Q psy1308 340 KHEVA-KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGK-GK-TIECKDAIFVM 416 (607)
Q Consensus 340 ~~~~~-~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~-g~-~~~~~~~~iI~ 416 (607)
.+-+. ++. .-.+++--+..||-+|||+||+...=...+-..|+...+...+ |- +.--..+.+|+
T Consensus 528 KdPvtrEWT-------------LEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIA 594 (854)
T KOG0477|consen 528 KDPVTREWT-------------LEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIA 594 (854)
T ss_pred eCCccceee-------------eccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhhe
Confidence 11111 010 0113344577899999999999988778888899988877653 22 22224566888
Q ss_pred ecC
Q psy1308 417 TSN 419 (607)
Q Consensus 417 tsn 419 (607)
++|
T Consensus 595 Aan 597 (854)
T KOG0477|consen 595 AAN 597 (854)
T ss_pred ecC
Confidence 888
No 383
>KOG0479|consensus
Probab=96.65 E-value=0.0087 Score=62.79 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=86.8
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHhh-CCCCC---CCCCceeeeeccCCCChhHHHHHHHHHhcc--------CcCCce
Q psy1308 262 LEQRLKDRIVGQESAINIISAAIKRKE-NGWTD---DDHPLVFLFLGSSGIGKTELAKQLAFYIHR--------DKKEAF 329 (607)
Q Consensus 262 L~~~l~~~i~Gq~~ai~~l~~~i~~~~-~~~~~---~~~p~~~ll~G~~G~GKt~la~~la~~l~~--------~~~~~~ 329 (607)
|...|...+.|.+...+.+..++.-.. ..+.+ -...+.+|+.|-|.+.|+.|.|.+...... ++.-++
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGL 374 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGL 374 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccc
Confidence 344456678898888887766654321 11222 223458999999999999999988765322 111122
Q ss_pred EEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCC-CcEEe
Q psy1308 330 IRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGK-GKTIE 408 (607)
Q Consensus 330 ~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~-g~~~~ 408 (607)
++- .-.+.. +| +...-.+++--+.+|||+|||+||++.-=.-++-++||.++++..+ |-...
T Consensus 375 TAA---VTtD~e------------TG--ERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHas 437 (818)
T KOG0479|consen 375 TAA---VTTDQE------------TG--ERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHAS 437 (818)
T ss_pred eeE---Eeeccc------------cc--hhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhh
Confidence 211 111000 01 1111233445577999999999999998888899999999998753 43222
Q ss_pred c-CceEEEEecC
Q psy1308 409 C-KDAIFVMTSN 419 (607)
Q Consensus 409 ~-~~~~iI~tsn 419 (607)
. ..|-++++.|
T Consensus 438 LNARCSVlAAAN 449 (818)
T KOG0479|consen 438 LNARCSVLAAAN 449 (818)
T ss_pred hccceeeeeecC
Confidence 1 3455788877
No 384
>KOG0482|consensus
Probab=96.64 E-value=0.01 Score=61.28 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=78.7
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCC-C---CCCCceeeeeccCCCChhHHHHHHHHHhccCc-----CCceEE
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKENGWT-D---DDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-----KEAFIR 331 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~-~---~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~ 331 (607)
.|...+...+.|..+..+.+.-++.-...... + -..-+.++++|-||+.|+.|.+.+.+...+.- ..+=+-
T Consensus 335 kLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVG 414 (721)
T KOG0482|consen 335 KLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVG 414 (721)
T ss_pred HHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccc
Confidence 35555667789999888887766643322111 1 12235899999999999999999998764420 000001
Q ss_pred eecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecC
Q psy1308 332 LDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDG 402 (607)
Q Consensus 332 l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~ 402 (607)
+..+...+.- +| +.-.-.+++--+.+||-+|||+||+...-...+-++||..++...
T Consensus 415 LTAAVmkDpv------------Tg--EM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIa 471 (721)
T KOG0482|consen 415 LTAAVMKDPV------------TG--EMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIA 471 (721)
T ss_pred cchhhhcCCC------------CC--eeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhh
Confidence 1111111100 00 000011234457789999999999999988999999998876654
No 385
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.58 E-value=0.0039 Score=57.79 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
++|.+..++.+...+. .. ....+..++++|++|+|||.+.+.+...+... ..-+..+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~----~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~-~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA----QSGSPRNLLLTGESGSGKTSLLRALLDRLAER-GGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT----SS-----EEE-B-TTSSHHHHHHHHHHHHHHH-T--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH----HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEEEecc
Confidence 5678888888877775 21 12224579999999999999999888887654 222666666655
No 386
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0083 Score=52.77 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=56.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCc----------------CCceEEeecccccccchhHhhhcC-CCC-CccCCC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDK----------------KEAFIRLDMSEYQEKHEVAKLIGA-PPG-YLGHDD 358 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~----------------~~~~~~l~~a~~~~~~~~~~llg~-~~g-~~g~~~ 358 (607)
++.+.++|+||+|||++++.+++.+...+ ..+|..+|.+.-........-+|. .-| |.-.-+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 45789999999999999999998874421 235566666533221111111111 001 111000
Q ss_pred C--chhhHHHhhCC--CeEEEEecCCcc---CHHHHHHHHHhhccc
Q psy1308 359 G--GQLTKRLKKCP--NAVVLFDEVDKA---HPDVLTVLLQLFDEG 397 (607)
Q Consensus 359 ~--~~l~~~~~~~~--~~vl~lDEiek~---~~~~~~~Ll~~~~~~ 397 (607)
. ......++++- -.++++|||.++ ++.+.+.+-++++.+
T Consensus 85 ~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~ 130 (179)
T COG1618 85 GLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSG 130 (179)
T ss_pred HHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCC
Confidence 0 01223444432 369999999987 456666777777643
No 387
>PRK14974 cell division protein FtsY; Provisional
Probab=96.38 E-value=0.13 Score=52.33 Aligned_cols=120 Identities=22% Similarity=0.347 Sum_probs=65.5
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc-----hhHhhhcCC--CCCccCCCCchhhHH--
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH-----EVAKLIGAP--PGYLGHDDGGQLTKR-- 365 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~-----~~~~llg~~--~g~~g~~~~~~l~~~-- 365 (607)
.+|..++|.|++|+|||.++..++..+... .....-+++..|.... ...+.+|.+ +++.|.+........
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 357799999999999999999999876443 2222233433332211 122333321 112221111111222
Q ss_pred -HhhCCCeEEEEecCCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 366 -LKKCPNAVVLFDEVDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 366 -~~~~~~~vl~lDEiek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
.+.....+|++|....++ ......|-.+.+. +....+++++.+..|.+.+
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~----------~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRV----------TKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHh----------hCCceEEEeeccccchhHH
Confidence 233456799999999996 4455566555431 1123456777776665544
No 388
>KOG2680|consensus
Probab=96.38 E-value=0.021 Score=55.21 Aligned_cols=100 Identities=15% Similarity=0.320 Sum_probs=72.7
Q ss_pred CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCccccc
Q psy1308 371 NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQ 450 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (607)
.||+|+||++.++-+...+|=+.+++- + -.++|++||.|-..+.. ++..
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d-----------~-~PiiimaTNrgit~iRG-------------------Tn~~ 337 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALEND-----------M-APIIIMATNRGITRIRG-------------------TNYR 337 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhc-----------c-CcEEEEEcCCceEEeec-------------------CCCC
Confidence 589999999999999999999999842 2 34788899966543311 1111
Q ss_pred CCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHH
Q psy1308 451 GSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETI 530 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~ 530 (607)
.+ ... +-+|+.|+ -++...|++.+|+.+|+..-.. +. .+.++++|+++
T Consensus 338 Sp--------------------hGi-P~D~lDR~-lII~t~py~~~d~~~IL~iRc~-------EE---dv~m~~~A~d~ 385 (454)
T KOG2680|consen 338 SP--------------------HGI-PIDLLDRM-LIISTQPYTEEDIKKILRIRCQ-------EE---DVEMNPDALDL 385 (454)
T ss_pred CC--------------------CCC-cHHHhhhh-heeecccCcHHHHHHHHHhhhh-------hh---ccccCHHHHHH
Confidence 10 012 37888888 6788899999999999765442 22 67889999999
Q ss_pred HHc
Q psy1308 531 LAD 533 (607)
Q Consensus 531 L~~ 533 (607)
|..
T Consensus 386 Lt~ 388 (454)
T KOG2680|consen 386 LTK 388 (454)
T ss_pred HHH
Confidence 985
No 389
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.33 E-value=0.018 Score=59.28 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=64.0
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc--cchhHhhhcCCCCCccCCCCchhhHHHhhCCCeE
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE--KHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAV 373 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~--~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~v 373 (607)
.|.-+.++|+.|+|||.|.-.....+.... -.+++.-.+.. +..+.++-|.. +.-..+...+ .....+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~---k~R~HFh~Fm~~vh~~l~~~~~~~------~~l~~va~~l-~~~~~l 130 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKR---KRRVHFHEFMLDVHSRLHQLRGQD------DPLPQVADEL-AKESRL 130 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccc---cccccccHHHHHHHHHHHHHhCCC------ccHHHHHHHH-HhcCCE
Confidence 455899999999999999999888876531 22333322221 11222222110 0011111222 223449
Q ss_pred EEEecCCccCHH---HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHh
Q psy1308 374 VLFDEVDKAHPD---VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHAL 430 (607)
Q Consensus 374 l~lDEiek~~~~---~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~ 430 (607)
|+|||++=-++. ++..|++.+= -..+++|+|||...+.+-+.++
T Consensus 131 LcfDEF~V~DiaDAmil~rLf~~l~-------------~~gvvlVaTSN~~P~~Ly~~gl 177 (362)
T PF03969_consen 131 LCFDEFQVTDIADAMILKRLFEALF-------------KRGVVLVATSNRPPEDLYKNGL 177 (362)
T ss_pred EEEeeeeccchhHHHHHHHHHHHHH-------------HCCCEEEecCCCChHHHcCCcc
Confidence 999998755443 4444554331 1457899999999988865443
No 390
>PRK04296 thymidine kinase; Provisional
Probab=96.31 E-value=0.013 Score=54.70 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=47.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec--ccccccchhHhhhcCCCCCccCCCCchhhHHHh--hCCCeEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM--SEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLK--KCPNAVV 374 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~--a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~--~~~~~vl 374 (607)
..+++||+|+|||.++..++..+... ......+.- ....+...+..-+|.............+...+. .....+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 46789999999998887777665433 222222211 111111112222221111000011122222332 2346799
Q ss_pred EEecCCccCHHHHHHHHHhh
Q psy1308 375 LFDEVDKAHPDVLTVLLQLF 394 (607)
Q Consensus 375 ~lDEiek~~~~~~~~Ll~~~ 394 (607)
++||+.-++.+.+..|++.+
T Consensus 83 iIDEaq~l~~~~v~~l~~~l 102 (190)
T PRK04296 83 LIDEAQFLDKEQVVQLAEVL 102 (190)
T ss_pred EEEccccCCHHHHHHHHHHH
Confidence 99999998877444455553
No 391
>KOG0736|consensus
Probab=96.30 E-value=0.027 Score=61.30 Aligned_cols=99 Identities=23% Similarity=0.404 Sum_probs=63.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch---hHhhhcCCCCCccCCCCchhhHHHhhCCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE---VAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~---~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~ 375 (607)
+++++|++|+||+.+++..+.++... +..+||.++..+.. ..++ .......+..+.+|||
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h----~~evdc~el~~~s~~~~etkl-------------~~~f~~a~~~~pavif 495 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLH----LLEVDCYELVAESASHTETKL-------------QAIFSRARRCSPAVLF 495 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCc----eEeccHHHHhhcccchhHHHH-------------HHHHHHHhhcCceEEE
Confidence 79999999999999999999998654 88888876543221 1121 1234556677788999
Q ss_pred EecCCccC--------HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 376 FDEVDKAH--------PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 376 lDEiek~~--------~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
|-..|-+. ..++..+-..+.+ +-.+.++..++||+|++.
T Consensus 496 l~~~dvl~id~dgged~rl~~~i~~~ls~------e~~~~~~~~~ivv~t~~s 542 (953)
T KOG0736|consen 496 LRNLDVLGIDQDGGEDARLLKVIRHLLSN------EDFKFSCPPVIVVATTSS 542 (953)
T ss_pred EeccceeeecCCCchhHHHHHHHHHHHhc------ccccCCCCceEEEEeccc
Confidence 88766542 1233333333331 111235667889998774
No 392
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.20 E-value=0.019 Score=53.82 Aligned_cols=121 Identities=24% Similarity=0.359 Sum_probs=71.2
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccC-cCCceEEeecccccccch---hHhhhcCCCC--CccCCCCchhhHHH---h
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRD-KKEAFIRLDMSEYQEKHE---VAKLIGAPPG--YLGHDDGGQLTKRL---K 367 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~-~~~~~~~l~~a~~~~~~~---~~~llg~~~g--~~g~~~~~~l~~~~---~ 367 (607)
|.+++|.||+|+|||..+-.||..+... .+-.++..|.-......+ .++.+|.+-- +...+....+...+ +
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5578999999999999998888776433 234556666544333322 3555553211 11111111222233 3
Q ss_pred hCCCeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 368 KCPNAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 368 ~~~~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
.....+||+|-..+.+.+ ....|.++++.- ...++++++.++.+.+.+..
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----------~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEAL----------NPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----------SSSEEEEEEEGGGGGHHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhc----------CCccceEEEecccChHHHHH
Confidence 445689999999988744 445555555421 23467899999988887653
No 393
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.17 E-value=0.48 Score=49.40 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=50.6
Q ss_pred hhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccch---hHHHHHHHHH
Q psy1308 478 DEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSI---KHEVERQVVS 554 (607)
Q Consensus 478 ~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L---~~~i~~~i~~ 554 (607)
+.|.+....+|...||+.+++..+..+...= +...++..-.++++.+..+++......|+..- |.+|... ++
T Consensus 318 ~~~~n~~~pvIrL~~l~~eel~~l~~klr~i----~a~~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~f-v~ 392 (416)
T PF10923_consen 318 DGFDNLRAPVIRLQPLTPEELLELLEKLRDI----YAEAYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDF-VD 392 (416)
T ss_pred ccccCccCceecCCCCCHHHHHHHHHHHHHH----HHhhCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHH-HH
Confidence 5666666778899999999999775544432 23335666788998888877534444444322 6666554 46
Q ss_pred HHHHHHHh
Q psy1308 555 QLAAAHEK 562 (607)
Q Consensus 555 ~l~~~~l~ 562 (607)
-|...-..
T Consensus 393 ~Ld~~~q~ 400 (416)
T PF10923_consen 393 VLDILEQN 400 (416)
T ss_pred HHHHHHHC
Confidence 66544433
No 394
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.069 Score=55.36 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=71.0
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccC-----cCCceEEeecccccccch---hHhhhcCCCCCccCCCCchhhHHH
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRD-----KKEAFIRLDMSEYQEKHE---VAKLIGAPPGYLGHDDGGQLTKRL 366 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~-----~~~~~~~l~~a~~~~~~~---~~~llg~~~g~~g~~~~~~l~~~~ 366 (607)
.+|..++|.||+|+|||..+..+|..+... .+-.++..|+-....... ..+.+|.+- ... .....+...+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv-~~~-~~~~~l~~~L 249 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-KAI-ESFKDLKEEI 249 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-Eee-CcHHHHHHHH
Confidence 446689999999999999999998765421 122344444321111111 133333321 111 1112333333
Q ss_pred h-hCCCeEEEEecCCccCHHHH--HHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHh
Q psy1308 367 K-KCPNAVVLFDEVDKAHPDVL--TVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHAL 430 (607)
Q Consensus 367 ~-~~~~~vl~lDEiek~~~~~~--~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~ 430 (607)
. .....+|++|++++.+.+.. ..+.++++... ....+++++.++.+...+.+..-
T Consensus 250 ~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~---------~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 250 TQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG---------RDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred HHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC---------CCCeEEEEEcCCCCHHHHHHHHH
Confidence 2 34578999999999986543 45555555321 01256788888888877765443
No 395
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.04 E-value=0.038 Score=57.32 Aligned_cols=134 Identities=19% Similarity=0.314 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec---c--cccccchhHhhh
Q psy1308 273 QESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM---S--EYQEKHEVAKLI 347 (607)
Q Consensus 273 q~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~---a--~~~~~~~~~~ll 347 (607)
|..+.+.+..++.. ..|..+.+.|+.|||||.+.+.|...+... .......-. | .+.+...+.++|
T Consensus 6 Q~~~~~~v~~~~~~--------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-~~~~~~~a~tg~AA~~i~~G~T~hs~f 76 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN--------EEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-GKKVLVTAPTGIAAFNIPGGRTIHSFF 76 (364)
T ss_pred HHHHHHHHHHHHHc--------cCCcEEEEEcCCCCChhHHHHHHHHHhccc-cceEEEecchHHHHHhccCCcchHHhc
Confidence 56666666666543 235678899999999999999999887553 222221111 1 121333445555
Q ss_pred cCCCCCccCCCC-----chhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 348 GAPPGYLGHDDG-----GQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 348 g~~~g~~g~~~~-----~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
+-+.+....... ......++. -.+|++|||-.++..+.+.+-+.+..-.-. ......|....+|+...
T Consensus 77 ~i~~~~~~~~~~~~~~~~~~~~~l~~--~~~lIiDEism~~~~~l~~i~~~lr~i~~~--~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 77 GIPINNNEKSQCKISKNSRLRERLRK--ADVLIIDEISMVSADMLDAIDRRLRDIRKS--KDSDKPFGGKQVILFGD 149 (364)
T ss_pred Cccccccccccccccccchhhhhhhh--heeeecccccchhHHHHHHHHHhhhhhhcc--cchhhhcCcceEEeehh
Confidence 543332211111 112222222 359999999999999888776666522111 00134566667777655
No 396
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.16 Score=52.19 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=69.0
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc--ccchh---HhhhcCCCCCccCCCCchhhHHHhhC
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ--EKHEV---AKLIGAPPGYLGHDDGGQLTKRLKKC 369 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~--~~~~~---~~llg~~~g~~g~~~~~~l~~~~~~~ 369 (607)
.+|..++|.||+|+|||.++..|+..+... ......+++..+. .-... .+..|.+ -++. .....+...++..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~RiaAvEQLk~yae~lgip-v~v~-~d~~~L~~aL~~l 315 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFE-VIAV-RDEAAMTRALTYF 315 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHhhhcCCc-EEec-CCHHHHHHHHHHH
Confidence 345689999999999999999999877543 2223334443332 11111 1222211 1112 2233444445332
Q ss_pred ----CCeEEEEecCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHH
Q psy1308 370 ----PNAVVLFDEVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHA 429 (607)
Q Consensus 370 ----~~~vl~lDEiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~ 429 (607)
...+||+|-....+. .....|.++++.. ....+++++.++.+...+.+..
T Consensus 316 k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~----------~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 316 KEEARVDYILIDTAGKNYRASETVEEMIETMGQV----------EPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhc----------CCCeEEEEECCccChHHHHHHH
Confidence 468999999998874 4456666666522 1234566676666665554443
No 397
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.059 Score=51.19 Aligned_cols=100 Identities=10% Similarity=0.198 Sum_probs=62.8
Q ss_pred eeeeeccCC-CChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCC------CCccCCCCchhhHHHhhC--
Q psy1308 299 VFLFLGSSG-IGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP------GYLGHDDGGQLTKRLKKC-- 369 (607)
Q Consensus 299 ~~ll~G~~G-~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~------g~~g~~~~~~l~~~~~~~-- 369 (607)
.++|.|..+ ++|..++..++..+...+ +.... +.++ .++...+ ..++-++-..+...+...
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~------i~~~~---HPD~-~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~ 86 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNS------IPLEN---NPDY-HFIARETSATSNAKNISIEQIRKLQDFLSKTSA 86 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccC------cccCC---CCCE-EEEeccccccccCCcccHHHHHHHHHHHhhCcc
Confidence 689999987 999999998888775431 11111 1111 1111110 122222222333334333
Q ss_pred --CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 370 --PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 370 --~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
+.-|++++++|+++++..+.||+.+|+.. .+++||++|.
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLEEPP-----------~~t~fILit~ 127 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILEDAP-----------KNSYIFLITS 127 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhcCCC-----------CCeEEEEEeC
Confidence 36799999999999999999999999742 5778888666
No 398
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.86 E-value=0.049 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=18.9
Q ss_pred CeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 371 NAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
.++|++||+..+.+.....++.-+.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~g 144 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRIG 144 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB-
T ss_pred ceEEEEecccCCCHHHHHHHHcccC
Confidence 6899999999999999988887765
No 399
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.82 E-value=0.05 Score=54.30 Aligned_cols=110 Identities=24% Similarity=0.327 Sum_probs=64.2
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccc--ccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEE
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSE--YQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~--~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~ 375 (607)
.-+.++|+.|+|||.|.-..-+.+.... . .+++.-. ..-+.....+-|.. +....+... -.++.-||+
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~-k--~R~HFh~FM~~vH~~l~~l~g~~------dpl~~iA~~-~~~~~~vLC 135 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGER-K--RRLHFHRFMARVHQRLHTLQGQT------DPLPPIADE-LAAETRVLC 135 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCccc-c--ccccHHHHHHHHHHHHHHHcCCC------CccHHHHHH-HHhcCCEEE
Confidence 3799999999999999988777765531 1 1222111 11122333443321 111222222 234567999
Q ss_pred EecCCccCH---HHHHHHHHh-hccceeecCCCcEEecCceEEEEecCcchHHHHHHHhh
Q psy1308 376 FDEVDKAHP---DVLTVLLQL-FDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431 (607)
Q Consensus 376 lDEiek~~~---~~~~~Ll~~-~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~ 431 (607)
|||++=-+. -++..|+.. +. ..+.+++|||...+++-..+++
T Consensus 136 fDEF~VtDI~DAMiL~rL~~~Lf~--------------~GV~lvaTSN~~P~~LY~dGlq 181 (367)
T COG1485 136 FDEFEVTDIADAMILGRLLEALFA--------------RGVVLVATSNTAPDNLYKDGLQ 181 (367)
T ss_pred eeeeeecChHHHHHHHHHHHHHHH--------------CCcEEEEeCCCChHHhcccchh
Confidence 999875444 355555543 33 3567999999999887655443
No 400
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.78 E-value=0.083 Score=52.12 Aligned_cols=126 Identities=16% Similarity=0.198 Sum_probs=74.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-----CCceEEeecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-----KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~l~~a~~~~~~~ 342 (607)
..++|-..+.+.+...-.-.. .+...++-.++++|+++.|||.+++...+...... .-|.+.+.+....+...
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~--~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLE--YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHh--CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 456777666665544332221 23344455899999999999999998887643211 23566667655544333
Q ss_pred h----HhhhcCCCCCcc--CCCCchhhHHHhhCCCeEEEEecCCcc---CHHHHHHHHHhhc
Q psy1308 343 V----AKLIGAPPGYLG--HDDGGQLTKRLKKCPNAVVLFDEVDKA---HPDVLTVLLQLFD 395 (607)
Q Consensus 343 ~----~~llg~~~g~~g--~~~~~~l~~~~~~~~~~vl~lDEiek~---~~~~~~~Ll~~~~ 395 (607)
. -..+|.+-.... ..........++...--+|+|||++.+ +..-|..++.++.
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK 173 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK 173 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH
Confidence 2 233354322111 111122346778888889999999884 4445666666554
No 401
>KOG2505|consensus
Probab=95.73 E-value=0.012 Score=60.21 Aligned_cols=42 Identities=31% Similarity=0.390 Sum_probs=24.9
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHH
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAA 128 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 128 (607)
-.|+||+|+..|...+|.+||+.+ +|+..+|..|+||..++.
T Consensus 430 tsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 430 TSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence 455566666666666666666665 666666666666655544
No 402
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.71 E-value=0.037 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.++++|++|+|||++.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 403
>KOG0481|consensus
Probab=95.71 E-value=0.021 Score=59.14 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=79.0
Q ss_pred HHhHhhhhHHHHHHHHHHHHHh-hCCCCCC---CCCceeeeeccCCCChhHHHHHHHHHhcc----Cc----CCceEEee
Q psy1308 266 LKDRIVGQESAINIISAAIKRK-ENGWTDD---DHPLVFLFLGSSGIGKTELAKQLAFYIHR----DK----KEAFIRLD 333 (607)
Q Consensus 266 l~~~i~Gq~~ai~~l~~~i~~~-~~~~~~~---~~p~~~ll~G~~G~GKt~la~~la~~l~~----~~----~~~~~~l~ 333 (607)
+...+.|..+..+.+...+--. +..+++. ...+.+|+.|-||+.|+.+.|.+-+.... ++ .-++++
T Consensus 329 IAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTA-- 406 (729)
T KOG0481|consen 329 IAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTA-- 406 (729)
T ss_pred cCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCccccccee--
Confidence 4456888888877776555221 1112221 22358999999999999999988765322 10 111111
Q ss_pred cccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecC-CCcEEe-cCc
Q psy1308 334 MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDG-KGKTIE-CKD 411 (607)
Q Consensus 334 ~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~-~g~~~~-~~~ 411 (607)
|...+ ....++. -+| +++--+.+||+++||+||+.++-.-++-+.||..++... .|-+.. -+.
T Consensus 407 -SV~RD-~~tReFy---------lEG----GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSR 471 (729)
T KOG0481|consen 407 -SVIRD-PSTREFY---------LEG----GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR 471 (729)
T ss_pred -eEEec-CCcceEE---------Eec----ceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecch
Confidence 11110 0011111 112 234457899999999999999988888899998877764 343321 233
Q ss_pred eEEEEecC
Q psy1308 412 AIFVMTSN 419 (607)
Q Consensus 412 ~~iI~tsn 419 (607)
+-+.++.|
T Consensus 472 tSVLAAAN 479 (729)
T KOG0481|consen 472 TSVLAAAN 479 (729)
T ss_pred hhhhhhcC
Confidence 34555555
No 404
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.53 E-value=0.024 Score=51.07 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=25.0
Q ss_pred eeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
+++.|++|+|||.+++.++...... ..+...+++
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEEC
Confidence 6789999999999999998887543 333444443
No 405
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.53 E-value=0.068 Score=50.27 Aligned_cols=93 Identities=22% Similarity=0.391 Sum_probs=48.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc-cccccchhHhhhcCCCCCccCCC---CchhhHHHhhCCCeEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS-EYQEKHEVAKLIGAPPGYLGHDD---GGQLTKRLKKCPNAVV 374 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a-~~~~~~~~~~llg~~~g~~g~~~---~~~l~~~~~~~~~~vl 374 (607)
.+++.||+|+|||.+.+.+...+........+.+.-. ++.... ...++-.. -+|.+. ...+...++.. ..++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-~~~~i~q~--~vg~~~~~~~~~i~~aLr~~-pd~i 78 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-KRSLINQR--EVGLDTLSFENALKAALRQD-PDVI 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-ccceeeec--ccCCCccCHHHHHHHHhcCC-cCEE
Confidence 4789999999999999998888754312222222211 111100 00011000 011111 11223334443 5699
Q ss_pred EEecCCccCHHHHHHHHHhhccc
Q psy1308 375 LFDEVDKAHPDVLTVLLQLFDEG 397 (607)
Q Consensus 375 ~lDEiek~~~~~~~~Ll~~~~~~ 397 (607)
++||+- +++....+++....|
T Consensus 79 i~gEir--d~e~~~~~l~~a~~G 99 (198)
T cd01131 79 LVGEMR--DLETIRLALTAAETG 99 (198)
T ss_pred EEcCCC--CHHHHHHHHHHHHcC
Confidence 999995 566667777776644
No 406
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.50 E-value=0.66 Score=49.05 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=69.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc-cCcCCceEEeeccccccc-----chhHhhhcCCCCCccCCCCchhhHHHhh-CCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH-RDKKEAFIRLDMSEYQEK-----HEVAKLIGAPPGYLGHDDGGQLTKRLKK-CPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~l~~a~~~~~-----~~~~~llg~~~g~~g~~~~~~l~~~~~~-~~~ 371 (607)
.++|.||+|+|||.++..|+..+. .........+++..+... ....+.+|.+- +... ....+...++. ...
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~-~~~~-~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-EVVY-DPKELAKALEQLRDC 300 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-EccC-CHHhHHHHHHHhCCC
Confidence 788999999999999988887664 221333444555444211 11123333221 2221 22334444443 357
Q ss_pred eEEEEecCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHH
Q psy1308 372 AVVLFDEVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHA 429 (607)
Q Consensus 372 ~vl~lDEiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~ 429 (607)
.+|++|-....+. .....|.++++.. + ...+++++++++.+...+.+..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~------~---~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFS------G---EPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhcc------C---CCCeEEEEEECCCCHHHHHHHH
Confidence 8999998877654 3445666676621 0 1235678888888887776543
No 407
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.46 E-value=0.05 Score=51.04 Aligned_cols=90 Identities=26% Similarity=0.305 Sum_probs=51.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc----------cccchhHhhhcCCCCCccCCCCchhhHHHhh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY----------QEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK 368 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~----------~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~ 368 (607)
..++.|++|+|||.+.+.+.+.+... ...++.+-.+.. .....+.+++...+.... .+ ....
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~-g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~--~~-----~~~~ 91 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAA-GKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDD--EG-----RPEL 91 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHT-T--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEEC--CS-----SCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhC-CCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccc--cc-----cccC
Confidence 57789999999999999999887654 233333322211 111223333322111000 00 0002
Q ss_pred CCCeEEEEecCCccCHHHHHHHHHhhcc
Q psy1308 369 CPNAVVLFDEVDKAHPDVLTVLLQLFDE 396 (607)
Q Consensus 369 ~~~~vl~lDEiek~~~~~~~~Ll~~~~~ 396 (607)
.+..+|++||+..++......|+..+..
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHh
Confidence 3456999999999999999999998864
No 408
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.45 E-value=0.068 Score=52.66 Aligned_cols=93 Identities=19% Similarity=0.295 Sum_probs=52.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec---ccccccchhHhhhcCCCC-CccC--------CCCchhhHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM---SEYQEKHEVAKLIGAPPG-YLGH--------DDGGQLTKRL 366 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~---a~~~~~~~~~~llg~~~g-~~g~--------~~~~~l~~~~ 366 (607)
.+++.||+|+|||.+.+.++..+... .+-+.++- .......++...++..+. .+|. .....+..++
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence 68999999999999999999877432 22222221 111112233322222222 1221 1111245567
Q ss_pred hhCCCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 367 ~~~~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
+.....++++||+.. .+....+++.+.
T Consensus 191 ~~~~P~villDE~~~--~e~~~~l~~~~~ 217 (270)
T TIGR02858 191 RSMSPDVIVVDEIGR--EEDVEALLEALH 217 (270)
T ss_pred HhCCCCEEEEeCCCc--HHHHHHHHHHHh
Confidence 777889999999863 444555555553
No 409
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.45 E-value=0.023 Score=51.64 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=52.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc---chhHhhhcCCCCCccCCCCc-hhhHHHhhCCCeEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK---HEVAKLIGAPPGYLGHDDGG-QLTKRLKKCPNAVV 374 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~---~~~~~llg~~~g~~g~~~~~-~l~~~~~~~~~~vl 374 (607)
.+.+.|++|+|||.+.+.|+..... ..+-+.++-...... ....+-++..+.+.|.+... .+...+ ..+..++
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral-~~~p~il 104 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARAL-ARNARLL 104 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHH-hcCCCEE
Confidence 6889999999999999999876543 334444443222111 00111122111111111111 122222 2346799
Q ss_pred EEecCC-ccCHHHHHHHHHhhc
Q psy1308 375 LFDEVD-KAHPDVLTVLLQLFD 395 (607)
Q Consensus 375 ~lDEie-k~~~~~~~~Ll~~~~ 395 (607)
++||-- .+++.....+.+++.
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIR 126 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHH
Confidence 999965 578888888888886
No 410
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.73 Score=48.05 Aligned_cols=126 Identities=16% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc--hhH---hhhcCCCCCccCCCCchhhHHHhhCC
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH--EVA---KLIGAPPGYLGHDDGGQLTKRLKKCP 370 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~--~~~---~llg~~~g~~g~~~~~~l~~~~~~~~ 370 (607)
++..+++.||+|+|||.++..++............-+++-.+.... ... +.+|.+ .........+...++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp--~~~~~~~~~l~~~l~~~~ 299 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP--FYPVKDIKKFKETLARDG 299 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCC--eeehHHHHHHHHHHHhCC
Confidence 3457889999999999999999875422112222233333322211 111 222211 111111223344555556
Q ss_pred CeEEEEecCCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHh
Q psy1308 371 NAVVLFDEVDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHAL 430 (607)
Q Consensus 371 ~~vl~lDEiek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~ 430 (607)
..+|++|=....+ ......|.++++.... .+...+++++.++.+...+.+...
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~-------~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGE-------KDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcC-------CCCCeEEEEEeCCCCHHHHHHHHH
Confidence 7899999766654 3455566666542110 113467888988888877766543
No 411
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=95.32 E-value=0.064 Score=48.18 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=97.9
Q ss_pred CHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccH
Q psy1308 87 DLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNP 166 (607)
Q Consensus 87 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~ 166 (607)
+-.|..|+..+.+.++++.-+... + + -...++..-.||+..+.|+|++. |-+....+-.+-+-.|....+.++
T Consensus 47 ~CLl~HAVk~nmL~ILqkyke~L~-~-~--~~~~q~LFElAC~~qkydiV~WI---~qnL~i~~~~~iFdIA~~~kDlsL 119 (192)
T PF03158_consen 47 WCLLYHAVKYNMLSILQKYKEDLE-N-E--RYLNQELFELACEEQKYDIVKWI---GQNLHIYNPEDIFDIAFAKKDLSL 119 (192)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHhh-c-c--hhHHHHHHHHHHHHccccHHHHH---hhccCCCCchhhhhhhhhccchhH
Confidence 345788999999999998877541 1 1 13456778899999999999999 444444444455667777777665
Q ss_pred H----HHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHH
Q psy1308 167 F----EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYA 242 (607)
Q Consensus 167 ~----~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll 242 (607)
. .+++++..... +...+.--..-|.+|+..|-...+.-.+++|.+++. +.|..|+..++..++.+++
T Consensus 120 yslGY~l~~~~~~~~~---~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi 190 (192)
T PF03158_consen 120 YSLGYKLLFNRMMSEH---NEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI 190 (192)
T ss_pred HHHHHHHHHhhccccc---ccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence 3 23334322210 000001112257899999999999999999988764 7899999999999999886
Q ss_pred H
Q psy1308 243 E 243 (607)
Q Consensus 243 ~ 243 (607)
.
T Consensus 191 ~ 191 (192)
T PF03158_consen 191 R 191 (192)
T ss_pred c
Confidence 4
No 412
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.28 E-value=0.17 Score=48.38 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh---
Q psy1308 271 VGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI--- 347 (607)
Q Consensus 271 ~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll--- 347 (607)
.-...++..+...+.... ..+.++|+.|+|||.+.|++.+.++.+ ....+.++-...........++
T Consensus 34 a~h~e~l~~l~~~i~d~q---------g~~~vtGevGsGKTv~~Ral~~s~~~d-~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 34 ADHNEALLMLHAAIADGQ---------GILAVTGEVGSGKTVLRRALLASLNED-QVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred hhhhHHHHHHHHHHhcCC---------ceEEEEecCCCchhHHHHHHHHhcCCC-ceEEEEecCcchhHHHHHHHHHHHh
Confidence 334556666555554332 257899999999999999777777653 3333455544444433332222
Q ss_pred cCCCC-Ccc---CCCCchhhHHHhhCCC-eEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcch
Q psy1308 348 GAPPG-YLG---HDDGGQLTKRLKKCPN-AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLAS 422 (607)
Q Consensus 348 g~~~g-~~g---~~~~~~l~~~~~~~~~-~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~ 422 (607)
+..|. .+. ......+..++.+..+ -+++.||.+.+..++...|.-+.+ .. .+..+ ..-+++...
T Consensus 104 ~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~n-l~-~~~~~------~l~ivL~Gq--- 172 (269)
T COG3267 104 ESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTN-LE-EDSSK------LLSIVLIGQ--- 172 (269)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHh-hc-ccccC------ceeeeecCC---
Confidence 22221 110 0011123444555555 789999999999998887766554 11 01110 111333322
Q ss_pred HHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHH
Q psy1308 423 NEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLV 502 (607)
Q Consensus 423 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~ 502 (607)
..+.. +... ..+ .+|-.|++.-+...|++.++...-+
T Consensus 173 p~L~~-------------------------------------~lr~----~~l--~e~~~R~~ir~~l~P~~~~~t~~yl 209 (269)
T COG3267 173 PKLRP-------------------------------------RLRL----PVL--RELEQRIDIRIELPPLTEAETGLYL 209 (269)
T ss_pred cccch-------------------------------------hhch----HHH--HhhhheEEEEEecCCcChHHHHHHH
Confidence 11111 0000 112 5788899765888999999888877
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 503 CRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 503 ~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
+..|+.- ..-.--++++++.++.
T Consensus 210 ~~~Le~a-------~~~~~l~~~~a~~~i~ 232 (269)
T COG3267 210 RHRLEGA-------GLPEPLFSDDALLLIH 232 (269)
T ss_pred HHHHhcc-------CCCcccCChhHHHHHH
Confidence 7776532 1223346888888885
No 413
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.61 Score=48.07 Aligned_cols=125 Identities=19% Similarity=0.305 Sum_probs=66.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccC-c--CCceEEeecccccccch---hHhhhcCCCCCccCCCCchhhHHHh-hC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRD-K--KEAFIRLDMSEYQEKHE---VAKLIGAPPGYLGHDDGGQLTKRLK-KC 369 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~-~--~~~~~~l~~a~~~~~~~---~~~llg~~~g~~g~~~~~~l~~~~~-~~ 369 (607)
.-+++|+||+|+|||.++..|+..+... + .-.++..|.-....... ..+++|.+-. .....+.+...+. ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLALAELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHHHHhc
Confidence 3478899999999999999999764221 1 22344433322211111 2334443221 1122233333333 34
Q ss_pred CCeEEEEecCCccCHH-HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhh
Q psy1308 370 PNAVVLFDEVDKAHPD-VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQL 432 (607)
Q Consensus 370 ~~~vl~lDEiek~~~~-~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~ 432 (607)
...+|+||.....+.+ .+...+..+... ......++++..+.+.+.+.+....+
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~---------~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGA---------DTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhcc---------CCCCeEEEEecCccChHHHHHHHHHH
Confidence 5689999999987643 222333333211 01124567777777777766554333
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.87 E-value=0.095 Score=53.87 Aligned_cols=95 Identities=22% Similarity=0.334 Sum_probs=49.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEe-ecccccccchhHhhh-cCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRL-DMSEYQEKHEVAKLI-GAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l-~~a~~~~~~~~~~ll-g~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
.+++.||+|+|||.+.+.+...+........+.+ |--++.... ...++ ....|+....-...+...++ ....++++
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr-~~pd~i~v 201 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRN-KRSLINQREVGLDTLSFANALRAALR-EDPDVILI 201 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccC-ccceEEccccCCCCcCHHHHHHHhhc-cCCCEEEE
Confidence 6899999999999999999987754312223332 111111100 00011 00111111001112223343 34579999
Q ss_pred ecCCccCHHHHHHHHHhhccc
Q psy1308 377 DEVDKAHPDVLTVLLQLFDEG 397 (607)
Q Consensus 377 DEiek~~~~~~~~Ll~~~~~~ 397 (607)
||+- +++.....++....|
T Consensus 202 gEir--d~~~~~~~l~aa~tG 220 (343)
T TIGR01420 202 GEMR--DLETVELALTAAETG 220 (343)
T ss_pred eCCC--CHHHHHHHHHHHHcC
Confidence 9996 666666666666544
No 415
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.86 E-value=0.34 Score=51.19 Aligned_cols=119 Identities=18% Similarity=0.331 Sum_probs=64.8
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc--h---hHhhhcCCCCCccCCCCc---hhhHHH
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH--E---VAKLIGAPPGYLGHDDGG---QLTKRL 366 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~--~---~~~llg~~~g~~g~~~~~---~l~~~~ 366 (607)
.+|..++++|++|+|||+++..+|..+... .....-+++..+.... . ..+-+|.+ -|....... .+...+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~R~aa~eQL~~la~~~gvp-~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVP-FYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCCCHHHHHHHHHHHHHcCCc-EEecCCccCHHHHHHHHH
Confidence 457789999999999999999999887643 3334445655553311 1 11222221 121111111 122333
Q ss_pred hh-CCCeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 367 KK-CPNAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 367 ~~-~~~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
+. ....+|++|.....+.+ ....|..+..- +....+++++.+..+.+.+
T Consensus 171 ~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~----------~~pdevlLVvda~~gq~av 222 (437)
T PRK00771 171 EKFKKADVIIVDTAGRHALEEDLIEEMKEIKEA----------VKPDEVLLVIDATIGQQAK 222 (437)
T ss_pred HHhhcCCEEEEECCCcccchHHHHHHHHHHHHH----------hcccceeEEEeccccHHHH
Confidence 33 23589999999877643 33333333220 1223566777776665544
No 416
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.83 E-value=0.73 Score=49.18 Aligned_cols=123 Identities=15% Similarity=0.232 Sum_probs=66.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccC-cCCceEEeecccc-----cccchhHhhhcCCCCCccCCCCchhhHHHhhCC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRD-KKEAFIRLDMSEY-----QEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCP 370 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~-~~~~~~~l~~a~~-----~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~ 370 (607)
+-+++|+||+|+|||+++..|+..+... +.....-+++..| ..-....+++|.+. +.................
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv-~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV-HAVKDAADLRLALSELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe-eccCCchhHHHHHHhccC
Confidence 4589999999999999999999876322 1112223333333 11111234444321 222222223334444456
Q ss_pred CeEEEEecCCccCHHH-HHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHH
Q psy1308 371 NAVVLFDEVDKAHPDV-LTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHA 429 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~-~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~ 429 (607)
...+++|.....+.+- +..++..+.+.. .....++++..+.+...+.+..
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~---------~p~e~~LVLdAt~~~~~l~~i~ 385 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAG---------APVKRLLLLNATSHGDTLNEVV 385 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccC---------CCCeeEEEEeCCCcHHHHHHHH
Confidence 6799999998776542 223333333211 0123567777777777766543
No 417
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.80 E-value=0.5 Score=49.56 Aligned_cols=119 Identities=19% Similarity=0.335 Sum_probs=67.6
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhh--hcCCCC---CccCCCCch---h---h
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKL--IGAPPG---YLGHDDGGQ---L---T 363 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~l--lg~~~g---~~g~~~~~~---l---~ 363 (607)
.+|.+++|+|++|+|||+++..||..+... .....-+++..|.. ..+..+ ++...+ |........ . .
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l 175 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGV 175 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHH
Confidence 346789999999999999999999887543 22344455544442 111111 222111 111111111 1 1
Q ss_pred HHHhhCCCeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 364 KRLKKCPNAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 364 ~~~~~~~~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
..++...+.+||+|=..+.+.+ ....|.++.+. +....+++++.+..|.+.+
T Consensus 176 ~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~----------~~p~e~lLVlda~~Gq~a~ 229 (429)
T TIGR01425 176 EKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEA----------IQPDNIIFVMDGSIGQAAE 229 (429)
T ss_pred HHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhh----------cCCcEEEEEeccccChhHH
Confidence 1223346789999999887764 44445544431 2335678888887776554
No 418
>PHA02774 E1; Provisional
Probab=94.80 E-value=0.26 Score=53.05 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=55.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.++|+||+|+|||.++..|.+.+.+. .+.-++. ..+- .+..+. .--+++|||
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~---vi~fvN~---~s~F-------------------wLqpl~---d~ki~vlDD 487 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGK---VISFVNS---KSHF-------------------WLQPLA---DAKIALLDD 487 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC---EEEEEEC---cccc-------------------ccchhc---cCCEEEEec
Confidence 78999999999999999999998543 1111222 1000 111111 123899999
Q ss_pred CCcc-CHHHHHHHHHhhccceeec--CCCcEEecCceEEEEecCcchH
Q psy1308 379 VDKA-HPDVLTVLLQLFDEGRLTD--GKGKTIECKDAIFVMTSNLASN 423 (607)
Q Consensus 379 iek~-~~~~~~~Ll~~~~~~~~~~--~~g~~~~~~~~~iI~tsn~~~~ 423 (607)
+-.. ..-+...|..+++...+.. ..-..+..+..-+|+|||++..
T Consensus 488 ~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~ 535 (613)
T PHA02774 488 ATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVK 535 (613)
T ss_pred CcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcc
Confidence 8322 1233446677776442221 1222334445568999996654
No 419
>KOG3347|consensus
Probab=94.77 E-value=0.074 Score=46.18 Aligned_cols=90 Identities=28% Similarity=0.432 Sum_probs=54.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.++++|.||+|||.++..+|+... +.-++++.+.... .+ |-|+++. +--.+|||
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~------~~~i~isd~vkEn---~l------~~gyDE~-----------y~c~i~DE 62 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTG------LEYIEISDLVKEN---NL------YEGYDEE-----------YKCHILDE 62 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhC------CceEehhhHHhhh---cc------hhccccc-----------ccCccccH
Confidence 588999999999999999997653 4456666553321 11 2232222 11335665
Q ss_pred CCccCHHHHHHHHHhh-ccceeecCCCcEE---ecCceEEEEecC
Q psy1308 379 VDKAHPDVLTVLLQLF-DEGRLTDGKGKTI---ECKDAIFVMTSN 419 (607)
Q Consensus 379 iek~~~~~~~~Ll~~~-~~~~~~~~~g~~~---~~~~~~iI~tsn 419 (607)
..+.+.|-..| +.|.++|-+|-.. ..-+.+|++++-
T Consensus 63 -----dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~ 102 (176)
T KOG3347|consen 63 -----DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTP 102 (176)
T ss_pred -----HHHHHHHHHHHhcCCcEEeecccCccchhheeEEEEEecC
Confidence 45666666544 3566777655322 234667888766
No 420
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=94.69 E-value=0.19 Score=47.03 Aligned_cols=93 Identities=22% Similarity=0.348 Sum_probs=59.4
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
.+++|.|+.|+|||...+.|....+.. . .....+ .+....+.. .-++.+|
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~~d-~-------~~~~~~--------------------kd~~~~l~~--~~iveld 102 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYFSD-S-------INDFDD--------------------KDFLEQLQG--KWIVELD 102 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhccC-c-------cccCCC--------------------cHHHHHHHH--hHheeHH
Confidence 478899999999999999986543322 0 111111 111122222 2488999
Q ss_pred cCCccCHHHHHHHHHhhccceee--cCCCc--EEecCceEEEEecCc
Q psy1308 378 EVDKAHPDVLTVLLQLFDEGRLT--DGKGK--TIECKDAIFVMTSNL 420 (607)
Q Consensus 378 Eiek~~~~~~~~Ll~~~~~~~~~--~~~g~--~~~~~~~~iI~tsn~ 420 (607)
|++.+...-++.|-.++-....+ ..-|+ ..-.+.++||.|||-
T Consensus 103 El~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 103 ELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred HHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 99999888888888887655433 22232 334578899999993
No 421
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.58 E-value=0.31 Score=51.10 Aligned_cols=80 Identities=24% Similarity=0.406 Sum_probs=47.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc-cccchhHhhhcCCCCCccCCCCchhhHHHhhC--CCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY-QEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC--PNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~-~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~--~~~vl~ 375 (607)
..++.||..+|||.+.+.+.+.+... .+-++.... ......... +....... ....+|
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d~~~~~~~l~d~---------------~~~~~~~~~~~~~yif 99 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDDLRLDRIELLDL---------------LRAYIELKEREKSYIF 99 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc----eEEEEecchhcchhhHHHH---------------HHHHHHhhccCCceEE
Confidence 68899999999999998888765332 222222221 111111111 11111111 347999
Q ss_pred EecCCccCHHHHHHHHHhhccce
Q psy1308 376 FDEVDKAHPDVLTVLLQLFDEGR 398 (607)
Q Consensus 376 lDEiek~~~~~~~~Ll~~~~~~~ 398 (607)
||||...+. .+..|-.+.+.+.
T Consensus 100 LDEIq~v~~-W~~~lk~l~d~~~ 121 (398)
T COG1373 100 LDEIQNVPD-WERALKYLYDRGN 121 (398)
T ss_pred EecccCchh-HHHHHHHHHcccc
Confidence 999997754 6777777777554
No 422
>PF05609 LAP1C: Lamina-associated polypeptide 1C (LAP1C); InterPro: IPR008662 This entry contains Rattus norvegicus LAP1C proteins and several uncharacterised highly related sequences from both Mus sp. and humans. Lamina-associated polypeptide 1s (LAP1s), also known as Torsin-1A-interacting protein 1, are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane []. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina [].
Probab=94.48 E-value=0.44 Score=49.91 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=84.9
Q ss_pred HHHHHhHhhhhHHH-HHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhH--HHHHHHHHhccCcCCceEEeecccccc
Q psy1308 263 EQRLKDRIVGQESA-INIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTE--LAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 263 ~~~l~~~i~Gq~~a-i~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~--la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
...|+..+-+|+.. .+.....+..+........+|.+++|.+..+.-+|. |+..||..+........+.+|-+.+..
T Consensus 254 ~~~Lk~~fp~Q~~~lW~~~~~~l~~hln~~~pr~qPavlll~a~~~a~~tl~cLa~~lA~ays~~~~~~~~~Idg~~~~~ 333 (465)
T PF05609_consen 254 IEQLKDKFPSQDEELWKRSRTFLEKHLNASHPRTQPAVLLLTAAQDAERTLRCLAEQLADAYSSFRDVSAIRIDGADKAH 333 (465)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCcchHHHHHHHHHHHHHhhhcCCceEEecCccccc
Confidence 34566677777744 455555555554443333788999998888766662 445555544321234466677555443
Q ss_pred cch-hHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 340 KHE-VAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 340 ~~~-~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
..+ .+++.- -..|...++.... +.++-.+|++||..--.|.++.|+-. .-|+++.+|||-
T Consensus 334 ~dsd~vK~~v----------D~~l~~~f~~~~~-aavv~~~e~lpp~stlify~YCD~en--------A~fK~~alilTv 394 (465)
T PF05609_consen 334 QDSDQVKLEV----------DNELSSGFENGQK-AAVVHRFESLPPGSTLIFYKYCDHEN--------AAFKDVALILTV 394 (465)
T ss_pred cChHHHHHHH----------HHHHHHHhhCCCe-eEEeehhhhCCCchhHHHHHhccCCC--------ccccceEEEEEE
Confidence 322 122210 1123344444343 45558999999999999999998643 568999999997
Q ss_pred Ccch
Q psy1308 419 NLAS 422 (607)
Q Consensus 419 n~~~ 422 (607)
-+..
T Consensus 395 ~l~~ 398 (465)
T PF05609_consen 395 LLEE 398 (465)
T ss_pred Eecc
Confidence 6543
No 423
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.38 E-value=0.038 Score=47.20 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=21.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.|++|+|||++++.|++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999876
No 424
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.29 E-value=0.044 Score=52.02 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.9
Q ss_pred CceeeeeccCCCChhHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLA 318 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la 318 (607)
|..++++|++|+|||.+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5679999999999999999875
No 425
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.26 E-value=0.11 Score=45.95 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=50.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCC-chhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG-GQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~-~~l~~~~~~~~~~vl~lD 377 (607)
.+.+.|++|+|||.+.+.++..... ..+-+.++-. . -++..+.+.+.+.. -.+...+- .+..++++|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~-----~----~i~~~~~lS~G~~~rv~laral~-~~p~illlD 95 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST-----V----KIGYFEQLSGGEKMRLALAKLLL-ENPNLLLLD 95 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe-----E----EEEEEccCCHHHHHHHHHHHHHh-cCCCEEEEe
Confidence 6789999999999999999876533 2333433321 0 01100111111111 11222332 345799999
Q ss_pred cCC-ccCHHHHHHHHHhhcc
Q psy1308 378 EVD-KAHPDVLTVLLQLFDE 396 (607)
Q Consensus 378 Eie-k~~~~~~~~Ll~~~~~ 396 (607)
|-. .+++.....|.+++.+
T Consensus 96 EP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 96 EPTNHLDLESIEALEEALKE 115 (144)
T ss_pred CCccCCCHHHHHHHHHHHHH
Confidence 964 6788888888888863
No 426
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.16 E-value=0.22 Score=54.83 Aligned_cols=92 Identities=18% Similarity=0.309 Sum_probs=53.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCC-ceEEeecccccc------------------------------cchhHhhh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKE-AFIRLDMSEYQE------------------------------KHEVAKLI 347 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~-~~~~l~~a~~~~------------------------------~~~~~~ll 347 (607)
.+++.|++|||||.++..+...+...... +-.++-++..++ ...+.+++
T Consensus 162 ~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHrlL 241 (586)
T TIGR01447 162 FSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHRLL 241 (586)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhhhh
Confidence 57889999999999998887765332111 001122222211 23344555
Q ss_pred cCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
|..++...+. ...-...+..+|++||+-.++......|++.+.
T Consensus 242 g~~~~~~~~~-----~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~ 284 (586)
T TIGR01447 242 GIKPDTKRFR-----HHERNPLPLDVLVVDEASMVDLPLMAKLLKALP 284 (586)
T ss_pred cccCCcchhh-----hcccCCCcccEEEEcccccCCHHHHHHHHHhcC
Confidence 5433211000 000011246799999999999999999998876
No 427
>PRK06696 uridine kinase; Validated
Probab=94.15 E-value=0.17 Score=48.59 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 276 AINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 276 ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.++.+...+.... ..+|..+.+.|++|+|||++|+.|++.+... ..+.+.+.+..|...
T Consensus 6 ~~~~la~~~~~~~-----~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~-g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 6 LIKELAEHILTLN-----LTRPLRVAIDGITASGKTTFADELAEEIKKR-GRPVIRASIDDFHNP 64 (223)
T ss_pred HHHHHHHHHHHhC-----CCCceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeccccccCC
Confidence 4444544444322 3357899999999999999999999998643 234555556666443
No 428
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.07 E-value=0.078 Score=47.30 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
+|.+++|+|.+|+|||.+|+.+.+.+... ..+...+|...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~-g~~~~~LDgD~l 41 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFAR-GIKVYLLDGDNL 41 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHT-TS-EEEEEHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEecCcch
Confidence 36789999999999999999999999876 566777776544
No 429
>KOG2543|consensus
Probab=93.99 E-value=0.49 Score=47.80 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=64.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc-cccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS-EYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a-~~~~~~~~~~ll 347 (607)
.+.+.+..+..+...+..... .-|..+.+.|.+|+|||.+.|++.+..+. +.+-+++- +|+.......++
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~-----~~PS~~~iyG~sgTGKT~~~r~~l~~~n~----~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSC-----TIPSIVHIYGHSGTGKTYLVRQLLRKLNL----ENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCCCCc-----ccceeEEEeccCCCchhHHHHHHHhhcCC----cceeeehHHhccHHHHHHHHH
Confidence 355666777777666543322 23667799999999999999999988744 24444432 333333333333
Q ss_pred cCC--CCCccCCCCc------hhhHHHhh------C-CCeEEEEecCCcc---CHHHHHHHHHhhc
Q psy1308 348 GAP--PGYLGHDDGG------QLTKRLKK------C-PNAVVLFDEVDKA---HPDVLTVLLQLFD 395 (607)
Q Consensus 348 g~~--~g~~g~~~~~------~l~~~~~~------~-~~~vl~lDEiek~---~~~~~~~Ll~~~~ 395 (607)
-.. ..+-|....+ .+...+++ . ..-.+++|.+|.+ ++.+...|+++-+
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~e 143 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYE 143 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHH
Confidence 211 1122222222 12222222 1 2457888998875 4555666655443
No 430
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.98 E-value=0.18 Score=46.63 Aligned_cols=95 Identities=26% Similarity=0.351 Sum_probs=52.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc--cchh----------HhhhcC------CCC-CccCCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE--KHEV----------AKLIGA------PPG-YLGHDDG 359 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~--~~~~----------~~llg~------~~g-~~g~~~~ 359 (607)
.+.+.|++|+|||.+.+.++..... ..+-+.++-..... .... .+.+|- .+. +.|.+..
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 6889999999999999999876533 34445544322111 0000 111121 111 1111111
Q ss_pred c-hhhHHHhhCCCeEEEEecCC-ccCHHHHHHHHHhhcc
Q psy1308 360 G-QLTKRLKKCPNAVVLFDEVD-KAHPDVLTVLLQLFDE 396 (607)
Q Consensus 360 ~-~l~~~~~~~~~~vl~lDEie-k~~~~~~~~Ll~~~~~ 396 (607)
. .+...+ ..+..++++||-- .+++.....+.+++.+
T Consensus 105 rl~laral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 105 RVLLARAL-AQEPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 0 122222 2356799999954 6788888888888863
No 431
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.98 E-value=0.3 Score=55.38 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=65.5
Q ss_pred eeeeeccCCCChhHHHHHH-HHHhccCcCCceEEee----cccccccchhHhhhcCCCC-CccCC---------------
Q psy1308 299 VFLFLGSSGIGKTELAKQL-AFYIHRDKKEAFIRLD----MSEYQEKHEVAKLIGAPPG-YLGHD--------------- 357 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~l-a~~l~~~~~~~~~~l~----~a~~~~~~~~~~llg~~~g-~~g~~--------------- 357 (607)
++++.|++|+|||+-.-.. .+.... ..+.+.+- .+..+-..-+++-+|...| .+||.
T Consensus 67 vvii~getGsGKTTqlP~~lle~g~~--~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~ 144 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLEEGLG--IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKV 144 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHhhhcc--cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEE
Confidence 6889999999999877443 333321 22222221 2222223345666666544 55552
Q ss_pred -CCchhhHHHhh----CCCeEEEEecCCc--cCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHH
Q psy1308 358 -DGGQLTKRLKK----CPNAVVLFDEVDK--AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHA 429 (607)
Q Consensus 358 -~~~~l~~~~~~----~~~~vl~lDEiek--~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~ 429 (607)
..|.+...+.. ..+++|+|||++. ++.++.-.|+.-+.... . -|++ +|||+.+++.+.+.++.
T Consensus 145 mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r-r------~DLK--iIimSATld~~rfs~~f 214 (845)
T COG1643 145 MTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARR-R------DDLK--LIIMSATLDAERFSAYF 214 (845)
T ss_pred eccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc-C------CCce--EEEEecccCHHHHHHHc
Confidence 12334444543 3489999999876 33333333332221111 1 1122 68888899988887764
No 432
>PRK10867 signal recognition particle protein; Provisional
Probab=93.95 E-value=1.5 Score=46.31 Aligned_cols=120 Identities=21% Similarity=0.390 Sum_probs=64.6
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc--hh---HhhhcCCCCCccC--CCCchhh-HH-
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH--EV---AKLIGAPPGYLGH--DDGGQLT-KR- 365 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~--~~---~~llg~~~g~~g~--~~~~~l~-~~- 365 (607)
..|.+++++|++|+|||+++..+|..+.........-+++-.|.... .. .+..|.+ =|... .....+. ..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~-v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP-VFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe-EEecCCCCCHHHHHHHHH
Confidence 34678999999999999999999887644312223445554443321 11 1222211 01110 0111121 22
Q ss_pred --HhhCCCeEEEEecCCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 366 --LKKCPNAVVLFDEVDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 366 --~~~~~~~vl~lDEiek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
.+...+.+|++|=...++ ......|..+.+. +....+++++.+..+.+.+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~----------v~p~evllVlda~~gq~av 230 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA----------VNPDEILLVVDAMTGQDAV 230 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh----------hCCCeEEEEEecccHHHHH
Confidence 233457899999988875 3445555544431 1234567777776664443
No 433
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=93.94 E-value=0.38 Score=52.19 Aligned_cols=110 Identities=24% Similarity=0.291 Sum_probs=62.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-------CCceEEeecccccccchhHhhhcCCCCC--ccCCCC---------c
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-------KEAFIRLDMSEYQEKHEVAKLIGAPPGY--LGHDDG---------G 360 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-------~~~~~~l~~a~~~~~~~~~~llg~~~g~--~g~~~~---------~ 360 (607)
++++.|++|+|||.+.|+|+..-+-.. .....-+--..|-......+.+.+|..- .+.++- +
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~ 500 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcH
Confidence 799999999999999999998743211 1111111112233333344444443321 111000 0
Q ss_pred h------------------------hhHHHhhCCCeEEEEecCC-ccCHHHHHHHHHhhccceeecCCCcEEecCceEEE
Q psy1308 361 Q------------------------LTKRLKKCPNAVVLFDEVD-KAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFV 415 (607)
Q Consensus 361 ~------------------------l~~~~~~~~~~vl~lDEie-k~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI 415 (607)
. +..++- ..+..+||||.- .++++.++.|++.+++ .+.++.||
T Consensus 501 ~L~~rl~~~~~W~~vLS~GEqQRlafARilL-~kP~~v~LDEATsALDe~~e~~l~q~l~~-----------~lp~~tvI 568 (604)
T COG4178 501 DLAERLDEEDRWDRVLSGGEQQRLAFARLLL-HKPKWVFLDEATSALDEETEDRLYQLLKE-----------ELPDATVI 568 (604)
T ss_pred HHHHHHhccCcHhhhcChhHHHHHHHHHHHH-cCCCEEEEecchhccChHHHHHHHHHHHh-----------hCCCCEEE
Confidence 0 111111 235699999974 4789999999999984 23456677
Q ss_pred EecCc
Q psy1308 416 MTSNL 420 (607)
Q Consensus 416 ~tsn~ 420 (607)
..+..
T Consensus 569 SV~Hr 573 (604)
T COG4178 569 SVGHR 573 (604)
T ss_pred Eeccc
Confidence 77763
No 434
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.86 E-value=0.13 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.2
Q ss_pred CCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 370 PNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 370 ~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
....++|||+..+|+.....|+....
T Consensus 62 ~~~~liiDE~~~~~~g~l~~l~~~~~ 87 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLLLLLSLSP 87 (234)
T ss_pred cCCEEEEeccccCChHHHHHHHhhcc
Confidence 46799999999999988887666544
No 435
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.85 E-value=0.14 Score=52.96 Aligned_cols=23 Identities=48% Similarity=0.592 Sum_probs=21.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
++++.|.+|||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999888
No 436
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.83 E-value=0.12 Score=48.42 Aligned_cols=96 Identities=21% Similarity=0.371 Sum_probs=55.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHh-hhcCCCCCccCC--------CCchhhHHHhhC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAK-LIGAPPGYLGHD--------DGGQLTKRLKKC 369 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~-llg~~~g~~g~~--------~~~~l~~~~~~~ 369 (607)
..++.|||++|||.+.|.||+.+... .++|.+.-..-..+.++++- +.|.+.--.|.. +......+++..
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g-~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDG-INQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhcc-ccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 57899999999999999999987442 23344333322222222321 112211111100 001134567777
Q ss_pred CCeEEEEecCCccCHHHHHHHHHhhccc
Q psy1308 370 PNAVVLFDEVDKAHPDVLTVLLQLFDEG 397 (607)
Q Consensus 370 ~~~vl~lDEiek~~~~~~~~Ll~~~~~~ 397 (607)
...|+++|||..... ..+++..++.|
T Consensus 218 ~PEViIvDEIGt~~d--~~A~~ta~~~G 243 (308)
T COG3854 218 SPEVIIVDEIGTEED--ALAILTALHAG 243 (308)
T ss_pred CCcEEEEeccccHHH--HHHHHHHHhcC
Confidence 788999999986543 34566777644
No 437
>KOG2228|consensus
Probab=93.78 E-value=1 Score=44.84 Aligned_cols=45 Identities=29% Similarity=0.339 Sum_probs=27.7
Q ss_pred EEEEecCCc-cCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHH
Q psy1308 373 VVLFDEVDK-AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424 (607)
Q Consensus 373 vl~lDEiek-~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~ 424 (607)
+.++||+|- +++.-|..|..++|-..-. ..--++|-+||.++--+
T Consensus 140 iFIldEfDlf~~h~rQtllYnlfDisqs~-------r~Piciig~Ttrld~lE 185 (408)
T KOG2228|consen 140 IFILDEFDLFAPHSRQTLLYNLFDISQSA-------RAPICIIGVTTRLDILE 185 (408)
T ss_pred EEEeehhhccccchhhHHHHHHHHHHhhc-------CCCeEEEEeeccccHHH
Confidence 555678987 5677788888898732210 11235666787765443
No 438
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.13 Score=46.35 Aligned_cols=94 Identities=23% Similarity=0.350 Sum_probs=53.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc--chhHhhhcCCCCCccCCCCc-hhhHHHhhCCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK--HEVAKLIGAPPGYLGHDDGG-QLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~--~~~~~llg~~~g~~g~~~~~-~l~~~~~~~~~~vl~ 375 (607)
.+.+.|++|+|||.+.+.|+..+.. ..+-+.++-...... ......++..+.+.+.+... .+...+- .+..+++
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~-~~~~i~i 103 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALL-LNPDLLL 103 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHh-cCCCEEE
Confidence 6889999999999999999876643 334445543222110 01111111111111111111 1222222 3468999
Q ss_pred EecCC-ccCHHHHHHHHHhhc
Q psy1308 376 FDEVD-KAHPDVLTVLLQLFD 395 (607)
Q Consensus 376 lDEie-k~~~~~~~~Ll~~~~ 395 (607)
+||.. .+++.....|.+++.
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~ 124 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLR 124 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHH
Confidence 99976 577888888888776
No 439
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=1.4 Score=46.18 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=67.7
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh-c--cCcCCceEEeeccccccc---chhHhhhcCCCCCccCCCCchhhHHHhhCC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI-H--RDKKEAFIRLDMSEYQEK---HEVAKLIGAPPGYLGHDDGGQLTKRLKKCP 370 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l-~--~~~~~~~~~l~~a~~~~~---~~~~~llg~~~g~~g~~~~~~l~~~~~~~~ 370 (607)
+-.+.|+||+|+|||.+.+.|+... . .....+++..|.-..... ....+++|-+- +.................
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~-~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV-RSIKDIADLQLMLHELRG 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce-ecCCCHHHHHHHHHHhcC
Confidence 3489999999999999999888653 1 112334555554333222 12345555322 222222222222333445
Q ss_pred CeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHh
Q psy1308 371 NAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHAL 430 (607)
Q Consensus 371 ~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~ 430 (607)
..++++|.....+.+ ....|-.+...+ ...+.++++.++.+...+.+...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~----------~~~~~~LVl~at~~~~~~~~~~~ 321 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCG----------TQVKHLLLLNATSSGDTLDEVIS 321 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccC----------CCceEEEEEcCCCCHHHHHHHHH
Confidence 789999998877643 333333332211 12356677877777777766443
No 440
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.63 E-value=3.4 Score=44.47 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=60.8
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeeccccccc-chhHhhhcCCCC--CccCCCCchhhHHHhh-CCCe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEK-HEVAKLIGAPPG--YLGHDDGGQLTKRLKK-CPNA 372 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~-~~~~~llg~~~g--~~g~~~~~~l~~~~~~-~~~~ 372 (607)
-.+.|+|++|+|||.++..|+..+.... .....-+++..|.-. .+....++...+ +........+...++. ..+.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 3788999999999999988887653321 122333333333211 111111121111 1111222344455544 3478
Q ss_pred EEEEecCCccCHHH--HHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 373 VVLFDEVDKAHPDV--LTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 373 vl~lDEiek~~~~~--~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
+||+|.....+.+. ...|. .+.... ....++|+.++.+...+.+.
T Consensus 431 LVLIDTaG~s~~D~~l~eeL~-~L~aa~----------~~a~lLVLpAtss~~Dl~ei 477 (559)
T PRK12727 431 LVLIDTAGMGQRDRALAAQLN-WLRAAR----------QVTSLLVLPANAHFSDLDEV 477 (559)
T ss_pred EEEecCCCcchhhHHHHHHHH-HHHHhh----------cCCcEEEEECCCChhHHHHH
Confidence 99999998776542 22222 222110 12346777777666555443
No 441
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.57 E-value=0.56 Score=46.19 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=60.1
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 270 IVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
++--+++++.+.+..+.-.. |- +.++.|..|+||..++|..+-.... .+..+.++.- -...++
T Consensus 10 lVlf~~ai~hi~ri~RvL~~-------~~Gh~LLvG~~GsGr~sl~rLaa~i~~~----~~~~i~~~~~---y~~~~f-- 73 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQ-------PRGHALLVGVGGSGRQSLARLAAFICGY----EVFQIEITKG---YSIKDF-- 73 (268)
T ss_dssp ----HHHHHHHHHHHHHHCS-------TTEEEEEECTTTSCHHHHHHHHHHHTTE----EEE-TTTSTT---THHHHH--
T ss_pred eeeHHHHHHHHHHHHHHHcC-------CCCCeEEecCCCccHHHHHHHHHHHhcc----ceEEEEeeCC---cCHHHH--
Confidence 44455667766655544432 33 8999999999999999976654322 1333333211 111111
Q ss_pred CCCCCccCCCCchhhHHHh----hCCCeEEEEecCCccCHHHHHHHHHhhccceeecC
Q psy1308 349 APPGYLGHDDGGQLTKRLK----KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDG 402 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~----~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~ 402 (607)
..++..++. .....+++|++-+-.++.....+-.++..|.+.+.
T Consensus 74 ----------~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~L 121 (268)
T PF12780_consen 74 ----------KEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNL 121 (268)
T ss_dssp ----------HHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTT
T ss_pred ----------HHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCC
Confidence 112222222 23467888888777778888888888888887654
No 442
>PTZ00293 thymidine kinase; Provisional
Probab=93.46 E-value=0.16 Score=47.71 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=46.7
Q ss_pred eeeeeccCCCChhH-HHHHHHHHhccCcCCceEEeecc---cccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEE
Q psy1308 299 VFLFLGSSGIGKTE-LAKQLAFYIHRDKKEAFIRLDMS---EYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVV 374 (607)
Q Consensus 299 ~~ll~G~~G~GKt~-la~~la~~l~~~~~~~~~~l~~a---~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl 374 (607)
.-+++||.++|||. |.+.+.++.... .....+-.+ .|.+...+..-.|.....+-......+...+ .+..+|
T Consensus 6 i~vi~GpMfSGKTteLLr~i~~y~~ag--~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~--~~~dvI 81 (211)
T PTZ00293 6 ISVIIGPMFSGKTTELMRLVKRFTYSE--KKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETA--KNYDVI 81 (211)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHcC--CceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHhc--cCCCEE
Confidence 34679999999998 999888876542 222223221 1101111111111100000001111222222 346899
Q ss_pred EEecCCccCHHHHHHHHHhhccce
Q psy1308 375 LFDEVDKAHPDVLTVLLQLFDEGR 398 (607)
Q Consensus 375 ~lDEiek~~~~~~~~Ll~~~~~~~ 398 (607)
++||+.=++ ++......+.+.|.
T Consensus 82 ~IDEaQFf~-~i~~~~~~l~~~g~ 104 (211)
T PTZ00293 82 AIDEGQFFP-DLVEFSEAAANLGK 104 (211)
T ss_pred EEEchHhhH-hHHHHHHHHHHCCC
Confidence 999999884 55555544444443
No 443
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=93.42 E-value=0.4 Score=44.48 Aligned_cols=96 Identities=21% Similarity=0.147 Sum_probs=60.6
Q ss_pred CchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHH--cCCHHHHHHHHh
Q psy1308 30 QSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAAR--YGSAKELKTFIE 107 (607)
Q Consensus 30 g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~ 107 (607)
-.+++-+|+.++..+++-+|+..-......- +.+ ..+-.-+-++.. ..+..+++++|+
T Consensus 179 A~~Am~~si~~~K~dva~~lls~f~ft~~dv---------~~~-----------~~~~ydieY~LS~h~a~~kvL~~Fi~ 238 (284)
T PF06128_consen 179 AHQAMWLSIGNAKEDVALYLLSKFNFTKQDV---------ASM-----------EKELYDIEYLLSEHSASYKVLEYFIN 238 (284)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhcceecchh---------hhc-----------CcchhhHHHHHhhcCCcHHHHHHHHh
Confidence 3466777777777777777765432221110 000 011122333332 346778888888
Q ss_pred cCCCCCccC---CCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy1308 108 NSKLDVNMR---HPLGWTPLHVAAINGKVDNVRVLLEAGAN 145 (607)
Q Consensus 108 ~~~~~~~~~---d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 145 (607)
+|-+++|.+ -+.|.|-|--|...++.+++.+||++||-
T Consensus 239 ~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 239 RGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred ccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 887777754 45688888888888888888888888873
No 444
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.37 E-value=0.2 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.2
Q ss_pred ceeeeeccCCCChhHHHHHHHHH
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~ 320 (607)
-.++++||.|+|||.+.|.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 46889999999999999999853
No 445
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.34 E-value=0.4 Score=47.80 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
++..++|+||+|+|||.++..++..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355899999999999999999998764
No 446
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=93.31 E-value=0.058 Score=56.03 Aligned_cols=100 Identities=26% Similarity=0.293 Sum_probs=66.4
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
..++=.||.|||||.+-+.+..+. .+-. .+...+++||..... .+. +++ ....+|.||
T Consensus 209 ~NliELgPrGTGKS~vy~eiSp~~---------~liS---GG~~T~A~LFyn~~~----~~~----GlV--~~~D~VafD 266 (457)
T PF13337_consen 209 YNLIELGPRGTGKSYVYKEISPYG---------ILIS---GGQVTVAKLFYNMST----GQI----GLV--GRWDVVAFD 266 (457)
T ss_pred cceEEEcCCCCCceeehhhcCccc---------EEEE---CCCcchHHheeeccC----Ccc----eee--eeccEEEEE
Confidence 468889999999999977665331 1111 122345677743211 011 111 224699999
Q ss_pred cCCccC---HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcc
Q psy1308 378 EVDKAH---PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLA 421 (607)
Q Consensus 378 Eiek~~---~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~ 421 (607)
||.... ++.+..|-..|++|.++.++. .-..++=++|..|..
T Consensus 267 Ev~~i~f~d~d~i~imK~YMesG~fsRG~~--~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 267 EVAGIKFKDKDEIQIMKDYMESGSFSRGKE--EINADASMVFVGNIN 311 (457)
T ss_pred eccCcccCChHHHHHHHHHHhccceeeccc--ccccceeEEEEcCcC
Confidence 998875 777789999999999998763 234667799999966
No 447
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.31 E-value=0.22 Score=45.66 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=51.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc--cchhHhhhcC---CCCC----------ccCCCC-chh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE--KHEVAKLIGA---PPGY----------LGHDDG-GQL 362 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~--~~~~~~llg~---~~g~----------~g~~~~-~~l 362 (607)
.+.+.|++|+|||.|.+.|+..... ..+-+.++-..... ......-++. .+.+ .|.+.. -.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~l 107 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHH
Confidence 6789999999999999999987543 23333343211110 0001111111 1110 000000 011
Q ss_pred hHHHhhCCCeEEEEecCC-ccCHHHHHHHHHhhcc
Q psy1308 363 TKRLKKCPNAVVLFDEVD-KAHPDVLTVLLQLFDE 396 (607)
Q Consensus 363 ~~~~~~~~~~vl~lDEie-k~~~~~~~~Ll~~~~~ 396 (607)
...+ ..+..++++||-- .+++.....+++++.+
T Consensus 108 a~al-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 108 ARAL-YGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HHHH-hcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 1222 2356799999964 5788888888888863
No 448
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.30 E-value=0.27 Score=55.74 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=53.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcC-CceEEeecc--------cc--cccchhHhhhcCCCCCccCCCCchhhHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKK-EAFIRLDMS--------EY--QEKHEVAKLIGAPPGYLGHDDGGQLTKRLK 367 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~-~~~~~l~~a--------~~--~~~~~~~~llg~~~g~~g~~~~~~l~~~~~ 367 (607)
.+++.|++|||||.+++.+.+.+...+. .+...+--+ .. .....+.++++..++... ....-.
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~------~~~~~~ 413 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFR------HNHLED 413 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccc------hhhhhc
Confidence 5789999999999999999888754311 111111100 00 012234455543222100 000001
Q ss_pred hCCCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 368 KCPNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 368 ~~~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
..+..+|++||+..++......|++.+.
T Consensus 414 ~~~~~llIvDEaSMvd~~~~~~Ll~~~~ 441 (720)
T TIGR01448 414 PIDCDLLIVDESSMMDTWLALSLLAALP 441 (720)
T ss_pred cccCCEEEEeccccCCHHHHHHHHHhCC
Confidence 1346799999999999999988888765
No 449
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.26 E-value=3.5 Score=42.48 Aligned_cols=120 Identities=13% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc--chh---HhhhcCCCCCccCCCCchhhHHHhhC-
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK--HEV---AKLIGAPPGYLGHDDGGQLTKRLKKC- 369 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~--~~~---~~llg~~~g~~g~~~~~~l~~~~~~~- 369 (607)
++-.++++||+|+|||.++..++..+... ......+++..|... ... .+.++. +-++. .....+...++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~gAveQLk~yae~lgv-pv~~~-~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRSGAVEQFQGYADKLDV-ELIVA-TSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCccHHHHHHHHhhcCCC-CEEec-CCHHHHHHHHHHHH
Confidence 34588999999999999999998776443 222333444444321 111 222221 11222 2333444444432
Q ss_pred ---CCeEEEEecCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 370 ---PNAVVLFDEVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 370 ---~~~vl~lDEiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
...+||+|=....+. +....|..+.+.. ....+++++.++.....+.+.
T Consensus 282 ~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~----------~p~~~~LVLsag~~~~d~~~i 335 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----------HPDLTCFTFSSGMKSADVMTI 335 (407)
T ss_pred hcCCCCEEEEECCCCCccCHHHHHHHHHHhhcc----------CCceEEEECCCcccHHHHHHH
Confidence 468999999988763 3444454444321 112235566665565555443
No 450
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.18 E-value=0.31 Score=46.23 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+-+.|++|+|||+++|.++-..
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhccc
Confidence 68899999999999999999764
No 451
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.11 E-value=0.11 Score=47.37 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+++.|++|+|||.+++.+++.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999873
No 452
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.09 E-value=0.14 Score=49.12 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=43.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCC----CCccC-CCCchhhHHHh-hCCCe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP----GYLGH-DDGGQLTKRLK-KCPNA 372 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~----g~~g~-~~~~~l~~~~~-~~~~~ 372 (607)
.+++.||+|+|||.+.+.++.........-+++.+.+....-..+-..+|... ++..+ .+...+...++ ..+.+
T Consensus 32 ~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~s 111 (222)
T cd03285 32 FLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSATENS 111 (222)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCe
Confidence 68899999999999999988653222111244444333322111112222111 11111 11122334443 34689
Q ss_pred EEEEecCCcc
Q psy1308 373 VVLFDEVDKA 382 (607)
Q Consensus 373 vl~lDEiek~ 382 (607)
++++||..+.
T Consensus 112 LvLLDEp~~g 121 (222)
T cd03285 112 LIIIDELGRG 121 (222)
T ss_pred EEEEecCcCC
Confidence 9999999664
No 453
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.05 E-value=1.8 Score=52.30 Aligned_cols=49 Identities=33% Similarity=0.435 Sum_probs=35.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.++|.+..++.+...+... ....-.+.++|+.|+|||++|+.++..+..
T Consensus 185 ~~vG~~~~l~~l~~lL~l~------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLE------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccchHHHHHHHHHHHccc------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4778888888777665321 112337889999999999999999876543
No 454
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.93 E-value=0.44 Score=43.32 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=52.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec----ccccc-----cchhHhhhc--CCCCCccCCCCc-hhhHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM----SEYQE-----KHEVAKLIG--APPGYLGHDDGG-QLTKRL 366 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~----a~~~~-----~~~~~~llg--~~~g~~g~~~~~-~l~~~~ 366 (607)
.+.+.|++|+|||.+.+.++..+... .+-+.++- +.... ...+.+.+- ......|.+... .+...+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999875432 22222221 10000 111222221 111122211111 122222
Q ss_pred hhCCCeEEEEecCC-ccCHHHHHHHHHhhcc
Q psy1308 367 KKCPNAVVLFDEVD-KAHPDVLTVLLQLFDE 396 (607)
Q Consensus 367 ~~~~~~vl~lDEie-k~~~~~~~~Ll~~~~~ 396 (607)
..+..++++||-. .+++..+..+.+++.+
T Consensus 107 -~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 107 -LHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred -HcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 2356799999965 5788899999998874
No 455
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.90 E-value=0.36 Score=53.35 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=53.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc------------------------------ccchhHhhhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ------------------------------EKHEVAKLIG 348 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~------------------------------~~~~~~~llg 348 (607)
..++.|++|||||.+++.+...+......+..++-+..-+ ....+.+++|
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 5789999999999999887766532111111111111111 1233455666
Q ss_pred CCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhcc
Q psy1308 349 APPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDE 396 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~ 396 (607)
..++-..+. ...-..-+..+|++||+..++-.....|++.+..
T Consensus 249 ~~~~~~~~~-----~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~ 291 (615)
T PRK10875 249 AQPGSQRLR-----YHAGNPLHLDVLVVDEASMVDLPMMARLIDALPP 291 (615)
T ss_pred cCCCccchh-----hccccCCCCCeEEEChHhcccHHHHHHHHHhccc
Confidence 543311000 0000112347999999999999999999998763
No 456
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.90 E-value=1.9 Score=44.38 Aligned_cols=124 Identities=23% Similarity=0.364 Sum_probs=71.6
Q ss_pred CceeeeeccCCCChhH-HHHHHHHHh--ccCcCCceEEeecccccccch---hHhhhcCCCCCccCCCCchhhHHHhh-C
Q psy1308 297 PLVFLFLGSSGIGKTE-LAKQLAFYI--HRDKKEAFIRLDMSEYQEKHE---VAKLIGAPPGYLGHDDGGQLTKRLKK-C 369 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~-la~~la~~l--~~~~~~~~~~l~~a~~~~~~~---~~~llg~~~g~~g~~~~~~l~~~~~~-~ 369 (607)
+-.+.|.||+|+|||. +||+-|.+. ..+.+-++++.|.=......+ ..+++|.|---+ .....+...+.. .
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv--~~~~el~~ai~~l~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV--YSPKELAEAIEALR 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe--cCHHHHHHHHHHhh
Confidence 3489999999999986 455555555 344466788888644333222 245555433211 112233333322 2
Q ss_pred CCeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhh
Q psy1308 370 PNAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQL 432 (607)
Q Consensus 370 ~~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~ 432 (607)
...+||+|=+++-+.+ ....|-.+++.+ . --++.++++++...+.+.+..-+|
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~-------~---~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVS-------H---SIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhcc-------c---cceEEEEEecCcchHHHHHHHHHh
Confidence 3579999999987655 445566666633 1 124557777776666665544333
No 457
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.90 E-value=0.087 Score=46.41 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.++++|++|+|||++++.+++.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 36899999999999999999765
No 458
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.89 E-value=1 Score=45.70 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=64.3
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc-----chhHhhhcCC--CCCccCCCCchhhHH---
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK-----HEVAKLIGAP--PGYLGHDDGGQLTKR--- 365 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~-----~~~~~llg~~--~g~~g~~~~~~l~~~--- 365 (607)
+|..++++||+|+|||.++..++..+... .....-+++..+... .......+.+ +...+.+........
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999887543 222333444333211 0011122210 001111111111121
Q ss_pred HhhCCCeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 366 LKKCPNAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 366 ~~~~~~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
.....+.+|++|=...++.+ ..+.|-.+.+--..... .....+++++.++.+...+.+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~----~~p~~~~LVl~a~~g~~~~~~ 251 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADP----DAPHEVLLVLDATTGQNALSQ 251 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcC----CCCceEEEEEECCCChHHHHH
Confidence 23456789999998887633 22333333221000000 112456788877777776654
No 459
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.87 E-value=1.3 Score=46.77 Aligned_cols=121 Identities=19% Similarity=0.398 Sum_probs=64.9
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc--h---hHhhhcCCCCCccCCCCc-hh-hHHH-
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH--E---VAKLIGAPPGYLGHDDGG-QL-TKRL- 366 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~--~---~~~llg~~~g~~g~~~~~-~l-~~~~- 366 (607)
.+|..+++.|++|+|||+++..+|..+..........+++-.+.... . ..+..|.+--..+..... .+ ...+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 45779999999999999999999988642213345556665554321 1 122222211111111111 11 1222
Q ss_pred --hhCCCeEEEEecCCccC--HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 367 --KKCPNAVVLFDEVDKAH--PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 367 --~~~~~~vl~lDEiek~~--~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
....+.+|++|=....+ ......|-++.+. +....+++++-++.+.+.+
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~----------~~p~e~lLVvda~tgq~~~ 229 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI----------LNPDEILLVVDAMTGQDAV 229 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh----------hCCceEEEEEeccchHHHH
Confidence 23456799999888775 3344444444331 1234567777666665443
No 460
>PRK08118 topology modulation protein; Reviewed
Probab=92.87 E-value=0.1 Score=47.54 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.++++|++|+|||++++.|++.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999988744
No 461
>KOG0922|consensus
Probab=92.83 E-value=0.6 Score=50.44 Aligned_cols=121 Identities=24% Similarity=0.341 Sum_probs=63.7
Q ss_pred eeeeeccCCCChhHHH-HHHHHHhccCcCCceEEee----cccccccchhHhhhcCCCC-CccC----------------
Q psy1308 299 VFLFLGSSGIGKTELA-KQLAFYIHRDKKEAFIRLD----MSEYQEKHEVAKLIGAPPG-YLGH---------------- 356 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la-~~la~~l~~~~~~~~~~l~----~a~~~~~~~~~~llg~~~g-~~g~---------------- 356 (607)
++++.|++|+|||.=. +.+++..+.. .+.+.+. .|..+=...++.-.|..-| -+||
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~--~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Triky 145 (674)
T KOG0922|consen 68 VLIVIGETGSGKSTQIPQYLAEAGFAS--SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKY 145 (674)
T ss_pred EEEEEcCCCCCccccHhHHHHhccccc--CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCceeEEE
Confidence 6889999999998644 5555554442 2222221 1111112223332332222 2332
Q ss_pred -CCCchhhHHHhh---CCCeEEEEecCCc--cCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHh
Q psy1308 357 -DDGGQLTKRLKK---CPNAVVLFDEVDK--AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHAL 430 (607)
Q Consensus 357 -~~~~~l~~~~~~---~~~~vl~lDEiek--~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~ 430 (607)
.+|-.+.+.+.. ..+++|++||++. ++.+++=-||+-+-..+ .++ -+||++..++++...++..
T Consensus 146 mTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R--------~~L--klIimSATlda~kfS~yF~ 215 (674)
T KOG0922|consen 146 MTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR--------PDL--KLIIMSATLDAEKFSEYFN 215 (674)
T ss_pred ecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC--------CCc--eEEEEeeeecHHHHHHHhc
Confidence 112223333322 2389999999986 56676665555443221 112 2678888888888877654
Q ss_pred h
Q psy1308 431 Q 431 (607)
Q Consensus 431 ~ 431 (607)
+
T Consensus 216 ~ 216 (674)
T KOG0922|consen 216 N 216 (674)
T ss_pred C
Confidence 3
No 462
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.81 E-value=0.18 Score=46.38 Aligned_cols=87 Identities=18% Similarity=0.042 Sum_probs=49.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCC-chhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG-GQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~-~~l~~~~~~~~~~vl~lD 377 (607)
.+.+.||+|+|||.|.+.++..+.. ..+-+.++-.... +.-......|.+.. -.+...+ ..+..++++|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~-------~~~q~~~LSgGq~qrv~laral-~~~p~lllLD 96 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGITPV-------YKPQYIDLSGGELQRVAIAAAL-LRNATFYLFD 96 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCEEEE-------EEcccCCCCHHHHHHHHHHHHH-hcCCCEEEEE
Confidence 6889999999999999999976543 3344444321100 00000001111111 1122222 2345799999
Q ss_pred cCC-ccCHHHHHHHHHhhc
Q psy1308 378 EVD-KAHPDVLTVLLQLFD 395 (607)
Q Consensus 378 Eie-k~~~~~~~~Ll~~~~ 395 (607)
|-- .+++..+..+++++.
T Consensus 97 EPts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIR 115 (177)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 965 578888887777775
No 463
>PRK13695 putative NTPase; Provisional
Probab=92.59 E-value=1.1 Score=41.04 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+++.|++|+|||.+++.++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999887653
No 464
>KOG1808|consensus
Probab=92.57 E-value=0.54 Score=57.20 Aligned_cols=98 Identities=28% Similarity=0.441 Sum_probs=67.0
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcC----CCCCccCCCCchhhHHHhhCCCeE
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA----PPGYLGHDDGGQLTKRLKKCPNAV 373 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~----~~g~~g~~~~~~l~~~~~~~~~~v 373 (607)
.+++|.||+++|||.+++.+++..... +++++--+ +.+..+++|. ..|-.-+.. +.+..+++ .+..
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~----~vrinnhe---htd~qeyig~y~~~~~g~l~fre-g~LV~Alr--~G~~ 510 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKN----IVRINNHE---HTDLQEYIGTYVADDNGDLVFRE-GVLVQALR--NGDW 510 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccC----ceehhccc---cchHHHHHHhhhcCCCCCeeeeh-hHHHHHHH--hCCE
Confidence 479999999999999999999987443 55554432 3446677761 222222221 22333332 4679
Q ss_pred EEEecCCccCHHHHHHHHHhhcc-ceeecCCCc
Q psy1308 374 VLFDEVDKAHPDVLTVLLQLFDE-GRLTDGKGK 405 (607)
Q Consensus 374 l~lDEiek~~~~~~~~Ll~~~~~-~~~~~~~g~ 405 (607)
++|||+.-++.+++..|.+++++ ..+....+.
T Consensus 511 ~vlD~lnla~~dvL~aLnrllddnRel~ipe~~ 543 (1856)
T KOG1808|consen 511 IVLDELNLAPHDVLEALNRLLDDNRELFIPETQ 543 (1856)
T ss_pred EEeccccccchHHHHHHHhhhhhhccccccccc
Confidence 99999999999999999999997 555544443
No 465
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.52 E-value=0.2 Score=45.09 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS 335 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a 335 (607)
+|.+++|+|.+|+|||.+|.++.+.|+.. ......||-.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~-G~~~y~LDGD 60 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAK-GYHVYLLDGD 60 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHc-CCeEEEecCh
Confidence 46789999999999999999999999876 4445555543
No 466
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=92.48 E-value=0.46 Score=44.15 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC------CCchHHHHHH-
Q psy1308 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD------LFNTVHRTAA- 160 (607)
Q Consensus 88 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d------~~~~l~~A~~- 160 (607)
-.|--|+...+.+.+.-++... ..-.++|-+|..++..+++-+|+.+= +...+| +.--+-++..
T Consensus 155 isledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~ 225 (284)
T PF06128_consen 155 ISLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSE 225 (284)
T ss_pred ccHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhh
Confidence 3467788888887777666543 12357888888888888888888641 111111 1001222221
Q ss_pred -cCCccHHHHHHhcCC-CccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCC
Q psy1308 161 -EKKMNPFEVLLKRED-EFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGA 213 (607)
Q Consensus 161 -~~~~~~~~~Ll~~g~-~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 213 (607)
.-+..++++++++|- ++|..-.. -..|.|-|--|..+++.+++.+||++||
T Consensus 226 h~a~~kvL~~Fi~~Glv~vN~~F~~--~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 226 HSASYKVLEYFINRGLVDVNKKFQK--VNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred cCCcHHHHHHHHhccccccchhhhc--cCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 223345555565552 33322111 1226666666666666666666666665
No 467
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.43 E-value=0.21 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.||+|+|||.+.+.++...
T Consensus 31 ~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999987553
No 468
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.32 E-value=0.98 Score=41.26 Aligned_cols=38 Identities=32% Similarity=0.642 Sum_probs=28.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
.+++.|++|+|||.+++.++..+... ......+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Confidence 46789999999999999999877543 334556666554
No 469
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.25 E-value=0.21 Score=45.89 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=28.6
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
+|..++|.|++|+|||.+++.+++.+... ..+...++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~-~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK-YSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEe
Confidence 45689999999999999999999988643 33344444
No 470
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.23 E-value=0.38 Score=44.25 Aligned_cols=95 Identities=28% Similarity=0.354 Sum_probs=51.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc-cchhHhhhcC---CCCCc---------cCCCCch----
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE-KHEVAKLIGA---PPGYL---------GHDDGGQ---- 361 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~-~~~~~~llg~---~~g~~---------g~~~~~~---- 361 (607)
.+.+.|++|+|||.+.+.++..... ..+-+.++-..... .....+-++. .+.+. ..-.+|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 6889999999999999999987543 23333333211100 0001111111 00000 0000111
Q ss_pred -hhHHHhhCCCeEEEEecCC-ccCHHHHHHHHHhhcc
Q psy1308 362 -LTKRLKKCPNAVVLFDEVD-KAHPDVLTVLLQLFDE 396 (607)
Q Consensus 362 -l~~~~~~~~~~vl~lDEie-k~~~~~~~~Ll~~~~~ 396 (607)
+...+- .+..++++||-- .+++.....+++++.+
T Consensus 108 ~laral~-~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 108 ALARILL-QDAPIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred HHHHHHh-cCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 122222 346799999964 5788888888888864
No 471
>PRK06547 hypothetical protein; Provisional
Probab=92.11 E-value=0.18 Score=46.08 Aligned_cols=27 Identities=41% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
.++..+.+.|++|+|||.+++.+++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346688899999999999999999875
No 472
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.07 E-value=0.47 Score=43.36 Aligned_cols=95 Identities=22% Similarity=0.353 Sum_probs=50.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc--cchhHhhhcC---CCCCccC---C---CCch-----h
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE--KHEVAKLIGA---PPGYLGH---D---DGGQ-----L 362 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~--~~~~~~llg~---~~g~~g~---~---~~~~-----l 362 (607)
.+.+.||+|+|||.+.+.++..+.. ..+-+.++-..... .......++. .+.+... + .+|. +
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 6889999999999999999987643 23333333211110 0000111111 0110000 0 0011 2
Q ss_pred hHHHhhCCCeEEEEecCC-ccCHHHHHHHHHhhcc
Q psy1308 363 TKRLKKCPNAVVLFDEVD-KAHPDVLTVLLQLFDE 396 (607)
Q Consensus 363 ~~~~~~~~~~vl~lDEie-k~~~~~~~~Ll~~~~~ 396 (607)
...+- .+..++++||-. .+++.....|.+++.+
T Consensus 108 a~al~-~~p~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 108 ARALL-RDPPILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred HHHHh-cCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 22222 345799999954 5788888888888863
No 473
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.07 E-value=0.28 Score=45.46 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.1
Q ss_pred eeeeccCCCChhHHHHHHHHHhcc
Q psy1308 300 FLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
+++.|+||+|||.++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999888766543
No 474
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.07 E-value=0.13 Score=44.13 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.1
Q ss_pred eeeeccCCCChhHHHHHHHHHh
Q psy1308 300 FLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~l 321 (607)
+++.|++|+|||++++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999886
No 475
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.01 E-value=2.3 Score=40.94 Aligned_cols=27 Identities=41% Similarity=0.827 Sum_probs=23.0
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
|..+.+.|++|+|||.+.+.+...+..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 557889999999999999999877644
No 476
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.94 E-value=0.16 Score=38.53 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.2
Q ss_pred eeeeccCCCChhHHHHHHHHHh
Q psy1308 300 FLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~l 321 (607)
+.+.|++|+|||.+++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999887
No 477
>KOG2383|consensus
Probab=91.93 E-value=0.22 Score=50.55 Aligned_cols=120 Identities=27% Similarity=0.366 Sum_probs=62.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCc---eEEeecccccccchhHhhhcC-CCCCccC---CCCchhhHHHhhC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEA---FIRLDMSEYQEKHEVAKLIGA-PPGYLGH---DDGGQLTKRLKKC 369 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~---~~~l~~a~~~~~~~~~~llg~-~~g~~g~---~~~~~l~~~~~~~ 369 (607)
|--+.++|..|+|||.|.-..-..+..-.... |..+++..-...|....-.|. .+||.-. +.-..+...+ ..
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI-a~ 192 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI-AE 192 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH-hh
Confidence 55899999999999999866543322110111 222222222222222222222 2332211 1111222222 22
Q ss_pred CCeEEEEecCCcc---CHHHHHHHHH-hhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhh
Q psy1308 370 PNAVVLFDEVDKA---HPDVLTVLLQ-LFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQ 431 (607)
Q Consensus 370 ~~~vl~lDEiek~---~~~~~~~Ll~-~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~ 431 (607)
...+|+|||+.-- +.-+++.|+. ++.+ .+++++|||...+.+.+.++|
T Consensus 193 ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~--------------GvVlvATSNR~P~dLYknGlQ 244 (467)
T KOG2383|consen 193 EAILLCFDEFQVTDVADAMILKRLFEHLFKN--------------GVVLVATSNRAPEDLYKNGLQ 244 (467)
T ss_pred hceeeeechhhhhhHHHHHHHHHHHHHHHhC--------------CeEEEEeCCCChHHHhhcchh
Confidence 3579999998643 3334444443 3332 357899999999998876665
No 478
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=91.83 E-value=2.1 Score=43.27 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 276 AINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 276 ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.++.+.+.+.....+. ......+++.|+.|+||+.+.+.+...+.
T Consensus 57 ~~~~l~~~lg~~L~~~--~~~~~~~~l~G~g~nGKStl~~~l~~l~G 101 (304)
T TIGR01613 57 LIEYLQRVIGYSLTGN--YTEQKLFFLYGNGGNGKSTFQNLLSNLLG 101 (304)
T ss_pred HHHHHHHHHhHHhcCC--CCceEEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4444444444443331 11234788999999999999998876664
No 479
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=91.79 E-value=1.1 Score=53.45 Aligned_cols=118 Identities=20% Similarity=0.367 Sum_probs=59.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEe----ecccccccchhHhhhcCCCC-CccCC----------------
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRL----DMSEYQEKHEVAKLIGAPPG-YLGHD---------------- 357 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l----~~a~~~~~~~~~~llg~~~g-~~g~~---------------- 357 (607)
++++.|++|+|||+..-.+.-..... ..+.+.+ -.+...-...+++.+|.+.| .+||.
T Consensus 84 vvii~g~TGSGKTTqlPq~lle~~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s~~T~I~~~ 162 (1283)
T TIGR01967 84 VVIIAGETGSGKTTQLPKICLELGRG-SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLVKLM 162 (1283)
T ss_pred eEEEeCCCCCCcHHHHHHHHHHcCCC-CCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccCCCceeeec
Confidence 68899999999999775444332211 2222211 11222222334455555443 34431
Q ss_pred CCchhhHHHhh----CCCeEEEEecCCc--cCHHHHHH-HHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 358 DGGQLTKRLKK----CPNAVVLFDEVDK--AHPDVLTV-LLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 358 ~~~~l~~~~~~----~~~~vl~lDEiek--~~~~~~~~-Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
..|.+...+.. ...++|+|||++. ++.++.-. |.+++... . + --+|+|+.+++.+.+.++
T Consensus 163 TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r----p-----d--LKlIlmSATld~~~fa~~ 229 (1283)
T TIGR01967 163 TDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR----P-----D--LKIIITSATIDPERFSRH 229 (1283)
T ss_pred cccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC----C-----C--CeEEEEeCCcCHHHHHHH
Confidence 12233333433 2378999999994 44444432 33343211 0 1 125777777776665554
No 480
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=91.76 E-value=0.32 Score=48.29 Aligned_cols=29 Identities=31% Similarity=0.553 Sum_probs=25.7
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
..|+.+++.|++|+|||.+|+.|++.+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~ 118 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI 118 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999999998843
No 481
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=91.76 E-value=0.59 Score=42.18 Aligned_cols=137 Identities=9% Similarity=0.014 Sum_probs=91.8
Q ss_pred chHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCC
Q psy1308 31 SSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSK 110 (607)
Q Consensus 31 ~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 110 (607)
.-.|..|+.++-..+++.+-...... -...++.+-.||+..+.++|+++-+.
T Consensus 47 ~CLl~HAVk~nmL~ILqkyke~L~~~--------------------------~~~~q~LFElAC~~qkydiV~WI~qn-- 98 (192)
T PF03158_consen 47 WCLLYHAVKYNMLSILQKYKEDLENE--------------------------RYLNQELFELACEEQKYDIVKWIGQN-- 98 (192)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHhhcc--------------------------hhHHHHHHHHHHHHccccHHHHHhhc--
Confidence 34578899999999988886653211 12345678889999999999998432
Q ss_pred CCCccCCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCC---c-hHHHHHHcCCccHHHHHHhcCCCccccCC
Q psy1308 111 LDVNMRHPLGWTPLHVAAINGKVDNV----RVLLEAGANPNLGDLF---N-TVHRTAAEKKMNPFEVLLKREDEFNDVLN 182 (607)
Q Consensus 111 ~~~~~~d~~g~tpLh~A~~~g~~~~v----~~Ll~~ga~~~~~d~~---~-~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 182 (607)
+... +-.+-.-.|....+.++. +++.++...-.-.|.. + -|..|+..|-..-+...+++|.+++.
T Consensus 99 --L~i~--~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~--- 171 (192)
T PF03158_consen 99 --LHIY--NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI--- 171 (192)
T ss_pred --cCCC--CchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH---
Confidence 2221 123455677777766552 2333443222112211 1 47789999999988888999988874
Q ss_pred CCcCcCCcchhhHHHhcCCHHHHHHHHh
Q psy1308 183 PNMTFLGFSALHYGVVAGNTEVVELLLK 210 (607)
Q Consensus 183 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 210 (607)
+.|..|+.+++..++.+++.
T Consensus 172 --------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 172 --------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred --------HHHHHHHHhhHHHHHHHhhc
Confidence 38899999999999988864
No 482
>PRK07667 uridine kinase; Provisional
Probab=91.74 E-value=0.46 Score=44.40 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=31.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ 338 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~ 338 (607)
+..+.+.|++|+|||.+++.|++.+... ..+...+++..|.
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~-~~~~~~i~~Dd~~ 57 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQE-GIPFHIFHIDDYI 57 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEEcCccc
Confidence 4688999999999999999999998653 3355566665553
No 483
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.67 E-value=0.34 Score=44.43 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=37.2
Q ss_pred CCCC-ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHh
Q psy1308 294 DDHP-LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAK 345 (607)
Q Consensus 294 ~~~p-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ 345 (607)
.++| +.+-+.||+|+|||.|...+.+.+..+-+-..+..|+-...+...+.+
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~ 61 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRK 61 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHh
Confidence 4557 588899999999999999888887554455566677766544444433
No 484
>PRK06762 hypothetical protein; Provisional
Probab=91.61 E-value=0.17 Score=45.96 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=22.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
|..+++.|++|+|||++++.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999887
No 485
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=91.56 E-value=0.65 Score=41.98 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=21.8
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
-..++.||.|+|||.+.+++.-.+..
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999998766544
No 486
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.55 E-value=1.9 Score=42.64 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=62.2
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc--chh---HhhhcCC--CCCccCCCCchhhHH--
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK--HEV---AKLIGAP--PGYLGHDDGGQLTKR-- 365 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~--~~~---~~llg~~--~g~~g~~~~~~l~~~-- 365 (607)
.+|..++|+|++|+|||.++..+|..+... .....-+++..|... .+. .+..|.+ ....+.+........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 345588888999999999999999877443 233334454443221 111 1222211 000011111111111
Q ss_pred -HhhCCCeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHH
Q psy1308 366 -LKKCPNAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426 (607)
Q Consensus 366 -~~~~~~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~ 426 (607)
.....+.+|++|=....+.+ .++.|-++.+-...... .....+++++.++.+.+.+.
T Consensus 149 ~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~----~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDK----DAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred HHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccC----CCCceEEEEEECCCCHHHHH
Confidence 22355788999988777643 23334443321110000 01235667777776665553
No 487
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.55 E-value=0.42 Score=44.17 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=21.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||.|.+.|+....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999997754
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.46 E-value=0.24 Score=46.70 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.1
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.++++||.|+|||.+.+.++..
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 6889999999999999999954
No 489
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.44 E-value=0.46 Score=43.35 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.|++|+|||.+|..++..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 47899999999999999998765
No 490
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=91.41 E-value=0.64 Score=42.99 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=31.1
Q ss_pred eEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 372 ~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
+.++++++++++...++.||+.+|+. ..+++||+.|..
T Consensus 56 ~k~iI~~a~~l~~~A~NaLLK~LEEP-----------p~~~~fiL~t~~ 93 (206)
T PRK08485 56 EKIIVIAAPSYGIEAQNALLKILEEP-----------PKNICFIIVAKS 93 (206)
T ss_pred cEEEEEchHhhCHHHHHHHHHHhcCC-----------CCCeEEEEEeCC
Confidence 44568899999999999999999963 367788887773
No 491
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.41 E-value=0.88 Score=46.23 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeeccc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSE 336 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~ 336 (607)
+|..+-+.|++|+|||.++..+...+...+ .-..+.+|.+.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 467899999999999999999988876432 33455556544
No 492
>PRK07261 topology modulation protein; Provisional
Probab=91.26 E-value=0.22 Score=45.59 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.++++|++|+|||++++.|++.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999987653
No 493
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=91.25 E-value=0.36 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.8
Q ss_pred eeeeccCCCChhHHHHHHHHH
Q psy1308 300 FLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~ 320 (607)
++++||.+.|||.+.|.++-.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 579999999999999999854
No 494
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.25 E-value=1.1 Score=44.49 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=25.9
Q ss_pred CCCCCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 293 DDDHPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 293 ~~~~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
...+|..+.+.|++|+|||++++.|...+.
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999988775
No 495
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.19 E-value=1 Score=45.87 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=50.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEe-ecccccc--cchhHhhhcCCCC--CccCCCCchhhHHHhhCCCeE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRL-DMSEYQE--KHEVAKLIGAPPG--YLGHDDGGQLTKRLKKCPNAV 373 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l-~~a~~~~--~~~~~~llg~~~g--~~g~~~~~~l~~~~~~~~~~v 373 (607)
.++++|++|+|||++.+++...+... ...+.+ |..++.- +.....++-...+ -........+...++. ....
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~~--~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~-~PD~ 238 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAI--ERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRL-RPDR 238 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCCC--CeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhcc-CCCe
Confidence 58999999999999999999887653 334443 2222221 1111222211111 0000111123333433 3568
Q ss_pred EEEecCCccCHHHHHHHHHhhccc
Q psy1308 374 VLFDEVDKAHPDVLTVLLQLFDEG 397 (607)
Q Consensus 374 l~lDEiek~~~~~~~~Ll~~~~~~ 397 (607)
+++.|+-. ++... +++.+..|
T Consensus 239 IivGEiR~--~ea~~-~l~a~~tG 259 (332)
T PRK13900 239 IIVGELRG--AEAFS-FLRAINTG 259 (332)
T ss_pred EEEEecCC--HHHHH-HHHHHHcC
Confidence 89999984 45554 57777655
No 496
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.10 E-value=0.67 Score=44.66 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=26.6
Q ss_pred CCCCceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 294 DDHPLVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 294 ~~~p~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
..+|..+.+.|++|+|||.+++.|+..+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3457789999999999999999999988654
No 497
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.04 E-value=0.35 Score=45.39 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
+|..+.++|++|+|||.+++.|+..+... ..+.+.++.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~-~~~~~~ld~ 60 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHEL-GVSTYLLDG 60 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhC-CCCEEEEcC
Confidence 46689999999999999999999987653 334555554
No 498
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.01 E-value=0.76 Score=45.26 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=50.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee-cccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD-MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~-~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
.+++.|++|+|||.+.+.+...+... ....+.+. -.++.-.....--+. ...+..-...+...++ ....+++++
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~-~~~iitiEdp~E~~~~~~~q~~v~---~~~~~~~~~~l~~~lR-~~PD~i~vg 156 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTP-EKNIITVEDPVEYQIPGINQVQVN---EKAGLTFARGLRAILR-QDPDIIMVG 156 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECCCceecCCCceEEEeC---CcCCcCHHHHHHHHhc-cCCCEEEec
Confidence 58999999999999999988777542 23344442 112211100000000 0111111223344444 345799999
Q ss_pred cCCccCHHHHHHHHHhhccc
Q psy1308 378 EVDKAHPDVLTVLLQLFDEG 397 (607)
Q Consensus 378 Eiek~~~~~~~~Ll~~~~~~ 397 (607)
||-. ++....+++....|
T Consensus 157 EiR~--~e~a~~~~~aa~tG 174 (264)
T cd01129 157 EIRD--AETAEIAVQAALTG 174 (264)
T ss_pred cCCC--HHHHHHHHHHHHcC
Confidence 9973 45556667777655
No 499
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.95 E-value=4.7 Score=45.53 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=64.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc-cCcCCceEEeeccccc--ccc---hhHhhhcCCCCCccCCCCchhhHHHhhC-
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH-RDKKEAFIRLDMSEYQ--EKH---EVAKLIGAPPGYLGHDDGGQLTKRLKKC- 369 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~l~~a~~~--~~~---~~~~llg~~~g~~g~~~~~~l~~~~~~~- 369 (607)
+.+++|+||+|+|||+.+..|+..+. ..+.....-+.+..|. ... ...+++|.+- ++.. +...+...++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv-~~~~-~~~~l~~al~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV-HAVK-DAADLRFALAALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-cccC-CHHHHHHHHHHhc
Confidence 45899999999999999988887652 2211122222222232 111 1234444322 2322 233344545443
Q ss_pred CCeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHH
Q psy1308 370 PNAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHA 429 (607)
Q Consensus 370 ~~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~ 429 (607)
...+||+|=....+.+ +...+..+.+. ....++++++.++.+.+.+.+..
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~----------~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGV----------GRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhcc----------CCCCeEEEEECCCCcHHHHHHHH
Confidence 4679999999877643 33333333321 12235677777776766665543
No 500
>PRK05439 pantothenate kinase; Provisional
Probab=90.93 E-value=0.82 Score=45.89 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCCCCceeeeeccCCCChhHHHHHHHHHhccC-cCCceEEeecccc
Q psy1308 293 DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRD-KKEAFIRLDMSEY 337 (607)
Q Consensus 293 ~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~-~~~~~~~l~~a~~ 337 (607)
...+|..+.+.|++|+|||++++.|...+... .......+.+..|
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34467899999999999999999999877432 1122344555444
Done!