Query psy1308
Match_columns 607
No_of_seqs 619 out of 4258
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 18:54:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 3.7E-36 1.3E-40 343.8 30.9 295 261-583 551-847 (854)
2 4b93_B Ankyrin repeat domain-c 100.0 2.1E-36 7E-41 300.0 18.6 219 25-249 6-246 (269)
3 4fcw_A Chaperone protein CLPB; 100.0 2.7E-34 9.4E-39 291.5 32.3 300 257-584 6-307 (311)
4 1k1a_A B-cell lymphoma 3-encod 100.0 2.7E-35 9.4E-40 286.9 22.0 217 25-246 4-240 (241)
5 1r6b_X CLPA protein; AAA+, N-t 100.0 4.3E-35 1.5E-39 332.4 25.8 287 261-579 451-739 (758)
6 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-35 4.1E-40 316.3 19.5 308 22-348 6-331 (437)
7 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-35 5.8E-40 291.1 18.2 213 23-266 3-231 (253)
8 1oy3_D Transcription factor in 100.0 8.2E-36 2.8E-40 297.7 15.4 214 24-265 3-265 (282)
9 3aji_A 26S proteasome non-ATPa 100.0 1.5E-34 5.3E-39 279.8 22.3 161 81-247 68-230 (231)
10 1n11_A Ankyrin; clathrin, BAND 100.0 7.6E-35 2.6E-39 310.1 21.2 324 3-347 21-363 (437)
11 3pxi_A Negative regulator of g 100.0 4.5E-34 1.5E-38 323.3 27.7 273 258-586 481-755 (758)
12 3utm_A Tankyrase-1; tankyrase, 100.0 1.5E-34 5.3E-39 297.7 21.7 222 9-262 37-317 (351)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 9.5E-35 3.3E-39 285.7 18.9 212 8-247 35-248 (253)
14 2xai_A ASB-9, ankyrin repeat a 100.0 7.3E-35 2.5E-39 288.0 18.0 201 29-262 2-203 (261)
15 2f8y_A Notch homolog 1, transl 100.0 1.5E-34 5.1E-39 278.3 19.2 210 12-249 7-218 (223)
16 1wdy_A 2-5A-dependent ribonucl 100.0 4.9E-34 1.7E-38 284.8 23.5 238 6-249 15-280 (285)
17 3b7b_A Euchromatic histone-lys 100.0 5.9E-34 2E-38 276.8 23.2 226 24-284 5-233 (237)
18 3ljn_A Hypothetical protein; a 100.0 6.6E-35 2.3E-39 302.8 17.5 227 23-250 13-272 (364)
19 2rfa_A Transient receptor pote 100.0 3E-34 1E-38 278.1 19.9 192 29-249 2-224 (232)
20 3aji_A 26S proteasome non-ATPa 100.0 8.5E-34 2.9E-38 274.6 19.8 207 27-264 3-211 (231)
21 2dzn_A Probable 26S proteasome 100.0 3.2E-34 1.1E-38 277.0 16.4 204 29-262 1-212 (228)
22 3d9h_A CDNA FLJ77766, highly s 100.0 1.8E-33 6.3E-38 281.6 22.3 211 24-244 53-275 (285)
23 4g8k_A 2-5A-dependent ribonucl 100.0 4E-33 1.4E-37 286.2 24.9 239 4-249 33-300 (337)
24 1ikn_D Protein (I-kappa-B-alph 100.0 1.2E-34 4.1E-39 281.8 12.3 201 25-249 3-211 (236)
25 1wdy_A 2-5A-dependent ribonucl 100.0 3.3E-33 1.1E-37 278.8 22.3 230 29-267 4-262 (285)
26 2xai_A ASB-9, ankyrin repeat a 100.0 3.4E-33 1.2E-37 276.0 21.8 225 4-262 11-242 (261)
27 2dzn_A Probable 26S proteasome 100.0 8.3E-33 2.8E-37 267.0 22.9 210 3-238 9-224 (228)
28 3d9h_A CDNA FLJ77766, highly s 100.0 1.5E-33 5.2E-38 282.2 17.8 215 27-248 12-248 (285)
29 2etb_A Transient receptor pote 100.0 3.6E-34 1.2E-38 282.0 12.8 197 29-250 1-249 (256)
30 4gpm_A Engineered protein OR26 100.0 2.3E-33 7.7E-38 257.3 17.0 156 88-249 6-163 (169)
31 3hra_A Ankyrin repeat family p 100.0 8E-33 2.7E-37 261.7 20.1 191 27-245 2-201 (201)
32 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-33 3.9E-38 294.4 14.2 251 23-282 87-367 (373)
33 1oy3_D Transcription factor in 100.0 6.5E-33 2.2E-37 276.6 18.4 203 3-233 16-269 (282)
34 3eu9_A Huntingtin-interacting 100.0 3.2E-32 1.1E-36 264.5 21.8 220 25-249 4-237 (240)
35 1s70_B 130 kDa myosin-binding 100.0 3.5E-32 1.2E-36 274.0 21.8 235 2-263 4-270 (299)
36 3kea_A K1L; tropism, ANK repea 100.0 1.5E-32 5.2E-37 274.9 17.9 222 22-288 23-248 (285)
37 3ljn_A Hypothetical protein; a 100.0 3.9E-32 1.3E-36 281.9 19.4 237 4-249 28-316 (364)
38 2pnn_A Transient receptor pote 100.0 3.3E-33 1.1E-37 278.0 10.7 204 23-247 6-258 (273)
39 3jxi_A Vanilloid receptor-rela 100.0 5.2E-33 1.8E-37 274.3 11.5 200 27-250 2-253 (260)
40 2fo1_E LIN-12 protein; beta-ba 100.0 8.9E-33 3E-37 287.6 13.6 220 24-248 118-372 (373)
41 3utm_A Tankyrase-1; tankyrase, 100.0 7.2E-32 2.5E-36 277.7 19.2 216 26-267 20-289 (351)
42 4gpm_A Engineered protein OR26 100.0 1.2E-31 4.2E-36 245.7 18.5 157 32-217 6-164 (169)
43 4g8k_A 2-5A-dependent ribonucl 100.0 1.2E-30 4.1E-35 267.7 21.1 204 24-250 119-329 (337)
44 2f8y_A Notch homolog 1, transl 100.0 4.2E-31 1.5E-35 254.1 15.7 177 81-266 20-199 (223)
45 1k1a_A B-cell lymphoma 3-encod 100.0 3E-30 1E-34 251.1 16.9 196 59-262 5-220 (241)
46 1ikn_D Protein (I-kappa-B-alph 100.0 2.1E-30 7.2E-35 251.7 15.3 194 10-232 22-229 (236)
47 2rfm_A Putative ankyrin repeat 100.0 2.2E-30 7.5E-35 243.2 14.7 162 79-246 28-191 (192)
48 3b7b_A Euchromatic histone-lys 100.0 7.3E-30 2.5E-34 247.9 18.4 228 79-322 4-234 (237)
49 3v31_A Ankyrin repeat family A 100.0 7.6E-30 2.6E-34 233.8 16.3 159 85-249 2-162 (167)
50 2rfa_A Transient receptor pote 100.0 4.7E-30 1.6E-34 248.5 15.6 194 85-281 2-217 (232)
51 1s70_B 130 kDa myosin-binding 100.0 6.9E-30 2.4E-34 257.2 16.7 189 81-281 35-252 (299)
52 4hbd_A KN motif and ankyrin re 100.0 2.7E-30 9.2E-35 257.3 11.8 190 30-245 76-273 (276)
53 3twr_A Tankyrase-2; ankyrin re 100.0 1.5E-29 5.1E-34 231.4 15.5 159 82-246 4-164 (165)
54 3v30_A DNA-binding protein rfx 100.0 1.4E-29 4.7E-34 233.3 15.1 158 87-249 3-162 (172)
55 1ihb_A P18-INK4C(INK6), cyclin 100.0 1E-29 3.5E-34 231.6 13.8 157 84-247 3-162 (162)
56 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.5E-29 8.6E-34 230.9 16.1 158 82-245 10-169 (169)
57 1sw6_A Regulatory protein SWI6 100.0 6.5E-30 2.2E-34 261.0 13.1 177 21-233 121-327 (327)
58 3kea_A K1L; tropism, ANK repea 100.0 5E-30 1.7E-34 256.6 11.9 216 80-321 25-244 (285)
59 3f6q_A Integrin-linked protein 100.0 3.5E-29 1.2E-33 232.3 16.8 162 84-250 3-166 (179)
60 3v30_A DNA-binding protein rfx 100.0 1.8E-29 6.3E-34 232.4 14.8 141 79-225 29-171 (172)
61 4b93_B Ankyrin repeat domain-c 100.0 2.3E-30 8E-35 256.4 9.0 175 80-263 46-223 (269)
62 3hra_A Ankyrin repeat family p 100.0 1.9E-28 6.6E-33 231.5 19.0 181 4-212 13-201 (201)
63 1awc_B Protein (GA binding pro 100.0 8.9E-29 3E-33 223.3 15.3 149 86-241 2-152 (153)
64 2etb_A Transient receptor pote 100.0 2.6E-29 8.9E-34 247.2 11.8 196 85-284 1-244 (256)
65 2rfm_A Putative ankyrin repeat 100.0 1.4E-28 4.7E-33 231.0 16.1 161 23-212 28-190 (192)
66 2pnn_A Transient receptor pote 100.0 5.2E-29 1.8E-33 247.6 11.7 189 26-227 50-272 (273)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.1E-28 1.1E-32 221.7 15.8 156 29-214 4-162 (162)
68 3v31_A Ankyrin repeat family A 100.0 2.8E-28 9.5E-33 223.3 15.0 159 28-215 1-161 (167)
69 2vge_A RELA-associated inhibit 100.0 1.4E-30 4.7E-35 251.7 -1.0 185 24-240 15-206 (229)
70 2y1l_E Darpin-8.4; hydrolase-i 100.0 9.6E-28 3.3E-32 220.3 17.8 159 25-212 9-169 (169)
71 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.2E-28 1.1E-32 220.2 14.1 152 86-244 2-155 (156)
72 3f6q_A Integrin-linked protein 100.0 9.7E-28 3.3E-32 222.5 17.1 166 29-222 4-171 (179)
73 3twr_A Tankyrase-2; ankyrin re 100.0 8.3E-28 2.9E-32 219.7 16.2 159 26-213 4-164 (165)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.1E-28 7.3E-33 238.2 10.0 178 28-234 3-193 (239)
75 1sw6_A Regulatory protein SWI6 99.9 6.7E-29 2.3E-33 253.5 4.3 218 24-263 46-321 (327)
76 3jxi_A Vanilloid receptor-rela 99.9 3.2E-28 1.1E-32 239.9 7.6 198 83-284 2-248 (260)
77 3eu9_A Huntingtin-interacting 99.9 1.8E-26 6.3E-31 223.8 20.0 206 5-217 18-238 (240)
78 1awc_B Protein (GA binding pro 99.9 8.5E-27 2.9E-31 210.2 16.2 149 30-208 2-152 (153)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.6E-26 5.5E-31 209.0 16.1 152 30-211 2-155 (156)
80 4hbd_A KN motif and ankyrin re 99.9 1.6E-26 5.3E-31 230.0 15.9 162 23-212 104-273 (276)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.1E-27 7.1E-32 231.1 8.7 160 84-250 3-167 (239)
82 3hws_A ATP-dependent CLP prote 99.9 1.5E-26 5.2E-31 239.3 15.0 273 261-559 8-326 (363)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 6.9E-27 2.4E-31 211.6 9.7 143 80-229 6-151 (156)
84 3t8k_A Uncharacterized protein 99.9 6.4E-27 2.2E-31 218.0 7.8 155 86-248 6-180 (186)
85 1d9s_A Cyclin-dependent kinase 99.9 2.4E-26 8.2E-31 202.9 10.0 130 111-246 3-135 (136)
86 1d9s_A Cyclin-dependent kinase 99.9 3.7E-26 1.3E-30 201.6 10.1 130 78-214 4-136 (136)
87 1ny5_A Transcriptional regulat 99.9 6.4E-25 2.2E-29 227.9 20.4 227 269-553 138-368 (387)
88 2vge_A RELA-associated inhibit 99.9 4.3E-26 1.5E-30 220.1 10.0 148 81-233 16-167 (229)
89 3dzd_A Transcriptional regulat 99.9 1.3E-24 4.5E-29 223.6 18.7 226 269-553 130-359 (368)
90 3t8k_A Uncharacterized protein 99.9 6.7E-26 2.3E-30 211.0 6.3 160 30-220 6-185 (186)
91 1ojl_A Transcriptional regulat 99.9 2.6E-24 8.8E-29 216.0 17.4 227 269-553 3-233 (304)
92 2aja_A Ankyrin repeat family p 99.9 5E-27 1.7E-31 242.4 -3.4 171 27-235 89-267 (376)
93 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.9E-24 2E-28 184.2 14.9 124 85-214 1-126 (126)
94 3c5r_A BARD-1, BRCA1-associate 99.9 2E-24 6.8E-29 190.7 11.7 125 116-245 6-132 (137)
95 3lvq_E ARF-GAP with SH3 domain 99.9 1.7E-23 5.7E-28 225.8 20.5 136 84-231 130-276 (497)
96 2aja_A Ankyrin repeat family p 99.9 4.4E-26 1.5E-30 235.3 0.3 156 81-250 87-253 (376)
97 3ui2_A Signal recognition part 99.9 1.7E-25 5.9E-30 218.2 4.4 143 81-247 40-185 (244)
98 2jab_A H10-2-G3; HER2, darpin, 99.9 6.6E-24 2.3E-28 187.1 14.0 125 82-212 10-136 (136)
99 3aaa_C Myotrophin, protein V-1 99.9 5.3E-24 1.8E-28 184.2 12.1 119 83-238 4-122 (123)
100 2b0o_E UPLC1; arfgap, structur 99.9 1.8E-23 6.2E-28 210.1 15.8 198 24-235 85-299 (301)
101 1bi7_B P16INK4A, MTS1, multipl 99.9 1.9E-24 6.4E-29 195.5 7.7 141 113-262 5-148 (156)
102 2jab_A H10-2-G3; HER2, darpin, 99.9 6.1E-24 2.1E-28 187.3 10.3 125 116-245 10-136 (136)
103 3deo_A Signal recognition part 99.9 5.6E-24 1.9E-28 197.9 9.6 140 81-244 39-181 (183)
104 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2E-23 6.9E-28 180.8 12.1 124 119-247 1-126 (126)
105 2bjv_A PSP operon transcriptio 99.9 1.5E-22 5.3E-27 199.8 18.5 226 269-553 7-238 (265)
106 1um8_A ATP-dependent CLP prote 99.9 2.1E-22 7.2E-27 209.3 20.0 285 261-577 14-357 (376)
107 3ehr_A Osteoclast-stimulating 99.9 1.2E-23 4.1E-28 202.0 9.8 134 80-250 67-201 (222)
108 3c5r_A BARD-1, BRCA1-associate 99.9 2.6E-23 8.8E-28 183.5 10.2 128 81-214 5-134 (137)
109 3ui2_A Signal recognition part 99.9 2E-22 6.7E-27 196.5 11.7 142 26-214 41-185 (244)
110 1dcq_A PYK2-associated protein 99.9 2.3E-21 7.7E-26 192.5 18.3 185 24-214 60-263 (278)
111 3deo_A Signal recognition part 99.9 5.9E-22 2E-26 184.1 11.6 138 27-211 41-181 (183)
112 3ehr_A Osteoclast-stimulating 99.9 3.4E-22 1.2E-26 191.8 9.4 137 27-222 70-206 (222)
113 2b0o_E UPLC1; arfgap, structur 99.9 1.9E-21 6.4E-26 195.4 13.6 144 30-202 151-299 (301)
114 3aaa_C Myotrophin, protein V-1 99.9 1.9E-21 6.4E-26 168.1 11.0 101 27-151 4-104 (123)
115 1n0q_A 3ANK, 3 ankyrin repeats 99.8 8.8E-21 3E-25 155.1 12.0 93 85-214 1-93 (93)
116 3jue_A Arfgap with coiled-coil 99.8 6.2E-21 2.1E-25 196.1 12.6 141 85-231 198-346 (368)
117 1g41_A Heat shock protein HSLU 99.8 1E-19 3.5E-24 188.5 20.1 164 366-582 245-430 (444)
118 2l6b_A NR1C; ankyrin, consensu 99.8 5.3E-21 1.8E-25 163.0 8.3 108 82-226 5-112 (115)
119 1ofh_A ATP-dependent HSL prote 99.8 4.6E-20 1.6E-24 186.4 16.3 252 261-582 8-296 (310)
120 1dcq_A PYK2-associated protein 99.8 3.5E-20 1.2E-24 183.9 14.6 163 81-248 61-264 (278)
121 3jue_A Arfgap with coiled-coil 99.8 1.8E-20 6.2E-25 192.6 10.3 130 114-248 193-327 (368)
122 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.7E-20 9.2E-25 152.2 9.1 93 119-247 1-93 (93)
123 3lvq_E ARF-GAP with SH3 domain 99.8 7.5E-20 2.6E-24 197.2 11.1 126 120-250 132-268 (497)
124 3m6a_A ATP-dependent protease 99.8 1.7E-19 5.8E-24 195.0 13.5 252 261-582 74-338 (543)
125 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-18 3.9E-23 148.5 9.3 100 115-250 4-103 (115)
126 3syl_A Protein CBBX; photosynt 99.7 7.8E-17 2.7E-21 162.6 18.5 219 262-561 25-268 (309)
127 2zgd_A 3 repeat synthetic anky 99.7 2.3E-17 7.8E-22 139.3 10.7 71 80-151 18-88 (110)
128 2zgd_A 3 repeat synthetic anky 99.7 1.8E-17 6E-22 139.9 8.0 93 113-241 17-109 (110)
129 3pfi_A Holliday junction ATP-d 99.6 8.2E-15 2.8E-19 149.7 18.8 196 268-553 29-232 (338)
130 3n70_A Transport activator; si 99.6 4.5E-15 1.5E-19 131.7 10.8 119 269-425 2-120 (145)
131 3k1j_A LON protease, ATP-depen 99.5 2.1E-14 7.2E-19 157.7 12.4 220 268-550 41-350 (604)
132 3pvs_A Replication-associated 99.5 1.8E-14 6E-19 151.5 11.2 192 268-553 26-220 (447)
133 1hqc_A RUVB; extended AAA-ATPa 99.5 1.2E-13 4.2E-18 140.0 16.3 193 269-551 13-214 (324)
134 3co5_A Putative two-component 99.5 2.3E-14 7.7E-19 126.8 4.5 112 269-421 5-116 (143)
135 1g8p_A Magnesium-chelatase 38 99.4 2.7E-13 9.2E-18 139.1 11.4 218 269-551 25-298 (350)
136 3eie_A Vacuolar protein sortin 99.4 7.4E-13 2.5E-17 134.0 13.4 210 268-562 18-242 (322)
137 3u61_B DNA polymerase accessor 99.4 3E-12 1E-16 129.8 16.3 188 269-552 27-220 (324)
138 3t15_A Ribulose bisphosphate c 99.4 8E-13 2.7E-17 131.6 10.6 128 275-419 14-163 (293)
139 1xwi_A SKD1 protein; VPS4B, AA 99.4 4.5E-12 1.5E-16 127.9 16.1 208 268-561 12-236 (322)
140 2qp9_X Vacuolar protein sortin 99.4 3.1E-12 1.1E-16 131.0 14.9 207 268-561 51-274 (355)
141 2zan_A Vacuolar protein sortin 99.4 7.6E-12 2.6E-16 132.0 18.2 210 268-561 134-358 (444)
142 3f9v_A Minichromosome maintena 99.4 2.9E-13 1E-17 147.4 6.3 237 259-549 286-561 (595)
143 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 4.4E-12 1.5E-16 134.4 14.8 141 261-419 15-157 (500)
144 2chg_A Replication factor C sm 99.3 1E-11 3.6E-16 118.1 15.0 190 269-552 18-208 (226)
145 3uk6_A RUVB-like 2; hexameric 99.3 5.6E-12 1.9E-16 130.2 12.4 218 268-555 44-310 (368)
146 4b4t_J 26S protease regulatory 99.3 5.3E-12 1.8E-16 128.5 11.4 196 268-556 148-370 (405)
147 3cf0_A Transitional endoplasmi 99.3 2.4E-11 8.2E-16 121.6 15.4 204 268-562 15-243 (301)
148 3te6_A Regulatory protein SIR3 99.3 2.2E-11 7.6E-16 121.1 14.7 243 269-576 21-306 (318)
149 1d2n_A N-ethylmaleimide-sensit 99.3 2.7E-12 9.2E-17 126.7 8.0 195 269-552 34-246 (272)
150 3vfd_A Spastin; ATPase, microt 99.3 1.3E-11 4.5E-16 128.3 13.4 203 268-554 115-332 (389)
151 3d8b_A Fidgetin-like protein 1 99.3 4.2E-11 1.4E-15 122.8 17.0 203 268-556 84-303 (357)
152 4b4t_I 26S protease regulatory 99.3 7.3E-12 2.5E-16 127.8 10.5 196 268-556 182-404 (437)
153 2chq_A Replication factor C sm 99.3 6.9E-12 2.4E-16 126.7 9.6 185 269-552 18-208 (319)
154 1iqp_A RFCS; clamp loader, ext 99.3 2E-11 6.8E-16 123.7 11.5 189 269-551 26-215 (327)
155 1sxj_D Activator 1 41 kDa subu 99.2 9.2E-12 3.1E-16 127.7 8.5 200 269-552 38-239 (353)
156 4b4t_M 26S protease regulatory 99.2 1.6E-11 5.4E-16 127.0 9.1 196 268-556 181-403 (434)
157 4b4t_H 26S protease regulatory 99.2 3.2E-11 1.1E-15 124.3 11.0 196 269-556 210-431 (467)
158 4b4t_L 26S protease subunit RP 99.2 3.5E-11 1.2E-15 124.6 11.2 196 268-556 181-403 (437)
159 3b9p_A CG5977-PA, isoform A; A 99.2 2.2E-10 7.5E-15 114.4 16.3 204 268-556 21-241 (297)
160 2qz4_A Paraplegin; AAA+, SPG7, 99.2 1.5E-10 5.2E-15 113.3 14.6 202 269-553 7-227 (262)
161 1fnn_A CDC6P, cell division co 99.2 2.1E-10 7.1E-15 119.2 16.4 216 269-553 18-252 (389)
162 2r44_A Uncharacterized protein 99.2 7.6E-11 2.6E-15 119.8 12.7 201 262-533 21-237 (331)
163 3h4m_A Proteasome-activating n 99.2 1.4E-10 4.8E-15 115.1 13.7 201 268-554 17-237 (285)
164 4b4t_K 26S protease regulatory 99.2 3.7E-11 1.3E-15 124.2 9.4 196 268-556 172-395 (428)
165 3hu3_A Transitional endoplasmi 99.2 4.9E-11 1.7E-15 126.5 10.3 202 269-557 205-424 (489)
166 1njg_A DNA polymerase III subu 99.2 2.6E-10 9E-15 109.9 14.6 195 269-551 24-231 (250)
167 1lv7_A FTSH; alpha/beta domain 99.2 1.4E-10 4.7E-15 113.3 12.6 200 268-556 12-233 (257)
168 2qby_B CDC6 homolog 3, cell di 99.2 1.2E-10 4E-15 120.9 12.3 210 268-551 20-248 (384)
169 1l8q_A Chromosomal replication 99.1 9.1E-11 3.1E-15 118.8 10.3 174 297-554 37-214 (324)
170 2ce7_A Cell division protein F 99.1 4E-10 1.4E-14 118.5 15.2 198 269-555 17-236 (476)
171 1jr3_A DNA polymerase III subu 99.1 1.3E-09 4.4E-14 112.5 17.5 196 269-552 17-225 (373)
172 2v1u_A Cell division control p 99.1 2.9E-10 1E-14 117.9 11.9 218 269-553 20-254 (387)
173 1sxj_B Activator 1 37 kDa subu 99.1 2.7E-10 9.2E-15 115.1 11.3 191 269-552 22-213 (323)
174 3bos_A Putative DNA replicatio 99.1 2.9E-10 1E-14 109.5 9.8 169 297-555 52-224 (242)
175 2r62_A Cell division protease 99.0 7E-11 2.4E-15 116.2 3.9 199 269-553 12-231 (268)
176 3pxg_A Negative regulator of g 99.0 7.4E-10 2.5E-14 117.5 10.2 195 269-551 181-406 (468)
177 1sxj_C Activator 1 40 kDa subu 99.0 1.2E-09 4E-14 111.3 10.2 173 269-533 26-199 (340)
178 2dhr_A FTSH; AAA+ protein, hex 99.0 1.1E-08 3.6E-13 108.3 16.6 194 269-554 32-250 (499)
179 1sxj_E Activator 1 40 kDa subu 98.9 2E-09 6.9E-14 110.3 10.3 195 269-551 15-240 (354)
180 2c9o_A RUVB-like 1; hexameric 98.9 5.5E-09 1.9E-13 110.6 13.4 65 268-337 37-101 (456)
181 2gno_A DNA polymerase III, gam 98.9 6.8E-09 2.3E-13 103.3 12.9 145 272-506 1-152 (305)
182 1sxj_A Activator 1 95 kDa subu 98.9 7.6E-09 2.6E-13 111.3 14.2 201 268-551 39-255 (516)
183 3f8t_A Predicted ATPase involv 98.9 2.1E-09 7E-14 110.5 8.6 142 260-420 206-348 (506)
184 3cf2_A TER ATPase, transitiona 98.9 5.8E-10 2E-14 123.7 4.7 203 269-561 478-704 (806)
185 1a5t_A Delta prime, HOLB; zinc 98.9 1.7E-08 5.9E-13 102.3 14.9 161 272-505 6-179 (334)
186 2z4s_A Chromosomal replication 98.9 3.2E-09 1.1E-13 111.7 9.7 178 297-554 130-312 (440)
187 2qby_A CDC6 homolog 1, cell di 98.9 3.2E-09 1.1E-13 110.0 8.3 212 269-552 21-249 (386)
188 1in4_A RUVB, holliday junction 98.8 6.9E-08 2.4E-12 97.8 17.3 193 269-551 26-226 (334)
189 3cf2_A TER ATPase, transitiona 98.8 8.6E-09 2.9E-13 114.4 10.4 202 268-560 204-427 (806)
190 1jbk_A CLPB protein; beta barr 98.8 1.3E-08 4.3E-13 94.1 9.0 154 269-502 23-194 (195)
191 1qvr_A CLPB protein; coiled co 98.8 4.8E-08 1.6E-12 111.6 14.8 178 269-533 171-366 (854)
192 1iy2_A ATP-dependent metallopr 98.7 1.4E-07 4.7E-12 93.0 14.8 168 299-555 75-260 (278)
193 1r6b_X CLPA protein; AAA+, N-t 98.7 4.1E-08 1.4E-12 111.0 12.4 179 269-533 187-383 (758)
194 1ixz_A ATP-dependent metallopr 98.7 1.4E-07 4.8E-12 91.6 14.6 195 269-555 17-236 (254)
195 3pxi_A Negative regulator of g 98.7 4.9E-08 1.7E-12 110.2 12.9 170 269-532 181-358 (758)
196 1ypw_A Transitional endoplasmi 98.6 4.9E-09 1.7E-13 118.3 -1.1 161 269-506 478-661 (806)
197 2x8a_A Nuclear valosin-contain 98.5 2.1E-06 7.1E-11 84.1 15.8 203 269-560 11-238 (274)
198 2p65_A Hypothetical protein PF 98.5 1.3E-07 4.4E-12 86.7 6.7 120 269-419 23-160 (187)
199 1w5s_A Origin recognition comp 98.4 9.9E-07 3.4E-11 92.0 10.9 220 269-551 23-269 (412)
200 1ypw_A Transitional endoplasmi 98.2 5E-06 1.7E-10 93.8 12.1 130 268-420 204-349 (806)
201 3ec2_A DNA replication protein 98.2 3.3E-06 1.1E-10 77.0 7.9 106 298-424 39-146 (180)
202 2w58_A DNAI, primosome compone 98.1 3.4E-06 1.2E-10 78.6 7.2 109 297-427 54-165 (202)
203 4akg_A Glutathione S-transfera 98.1 4.7E-06 1.6E-10 103.6 8.8 159 299-509 1269-1434(2695)
204 3vkg_A Dynein heavy chain, cyt 98.0 4.1E-06 1.4E-10 104.7 6.2 160 299-509 1306-1472(3245)
205 4akg_A Glutathione S-transfera 98.0 8.9E-05 3.1E-09 92.3 17.2 101 299-420 647-756 (2695)
206 1jr3_D DNA polymerase III, del 97.9 0.00011 3.7E-09 74.5 13.6 164 299-552 20-189 (343)
207 2qgz_A Helicase loader, putati 97.8 4.4E-05 1.5E-09 75.9 8.4 108 298-427 153-264 (308)
208 2kjq_A DNAA-related protein; s 97.8 3.7E-05 1.3E-09 67.6 6.9 89 299-422 38-126 (149)
209 3vkg_A Dynein heavy chain, cyt 97.7 0.00039 1.3E-08 87.3 15.9 102 299-421 606-717 (3245)
210 2qen_A Walker-type ATPase; unk 97.5 0.00095 3.3E-08 67.3 13.9 52 269-336 13-64 (350)
211 2fna_A Conserved hypothetical 97.4 0.0014 4.8E-08 66.2 13.1 53 269-337 14-66 (357)
212 2orw_A Thymidine kinase; TMTK, 97.2 0.00021 7.3E-09 65.1 3.7 96 299-396 5-102 (184)
213 1tue_A Replication protein E1; 97.0 0.0016 5.5E-08 59.5 8.0 25 299-323 60-84 (212)
214 1u0j_A DNA replication protein 97.0 0.003 1E-07 60.4 10.1 93 299-421 106-200 (267)
215 1qzm_A ATP-dependent protease 97.0 0.0019 6.4E-08 50.8 6.9 88 492-583 2-90 (94)
216 2b8t_A Thymidine kinase; deoxy 96.6 0.0038 1.3E-07 58.4 7.2 96 299-395 14-114 (223)
217 3upu_A ATP-dependent DNA helic 96.2 0.0056 1.9E-07 64.4 6.7 113 272-395 29-153 (459)
218 1ye8_A Protein THEP1, hypothet 96.1 0.018 6.1E-07 51.9 8.4 24 299-322 2-25 (178)
219 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.025 8.6E-07 55.5 9.2 69 299-384 125-196 (331)
220 1xx6_A Thymidine kinase; NESG, 95.9 0.0059 2E-07 55.7 4.4 95 299-396 10-107 (191)
221 2j9r_A Thymidine kinase; TK1, 95.8 0.011 3.7E-07 54.6 5.5 94 299-395 30-126 (214)
222 3jvv_A Twitching mobility prot 95.1 0.024 8.1E-07 57.1 6.0 93 299-397 125-221 (356)
223 3e2i_A Thymidine kinase; Zn-bi 95.0 0.02 6.8E-07 52.7 4.5 98 298-398 29-129 (219)
224 2a5y_B CED-4; apoptosis; HET: 94.9 0.43 1.5E-05 51.1 15.5 44 271-319 131-174 (549)
225 2r8r_A Sensor protein; KDPD, P 94.6 0.14 4.8E-06 47.5 9.1 83 297-382 6-96 (228)
226 3e1s_A Exodeoxyribonuclease V, 94.5 0.046 1.6E-06 58.9 6.6 89 299-395 206-304 (574)
227 2r2a_A Uncharacterized protein 94.4 0.09 3.1E-06 48.1 7.5 25 297-321 5-29 (199)
228 1w4r_A Thymidine kinase; type 94.3 0.028 9.6E-07 50.9 3.8 91 299-396 22-116 (195)
229 1gvn_B Zeta; postsegregational 94.2 0.097 3.3E-06 51.0 7.8 39 292-334 28-66 (287)
230 3dm5_A SRP54, signal recogniti 94.2 0.47 1.6E-05 48.9 13.0 118 296-424 99-228 (443)
231 1z6t_A APAF-1, apoptotic prote 93.9 0.23 7.9E-06 53.7 10.9 45 269-319 125-169 (591)
232 2orv_A Thymidine kinase; TP4A 93.8 0.11 3.9E-06 48.2 6.8 92 299-395 21-113 (234)
233 3kl4_A SRP54, signal recogniti 93.6 0.42 1.4E-05 49.2 11.5 116 296-423 96-226 (433)
234 2i3b_A HCR-ntpase, human cance 93.6 0.025 8.5E-07 51.4 1.9 24 299-322 3-26 (189)
235 2eyu_A Twitching motility prot 93.4 0.1 3.5E-06 50.0 6.1 25 299-323 27-51 (261)
236 3cmw_A Protein RECA, recombina 93.3 0.17 5.8E-06 60.7 8.8 84 299-384 1084-1174(1706)
237 1qhx_A CPT, protein (chloramph 93.1 0.086 2.9E-06 47.0 4.8 34 297-334 3-36 (178)
238 1w36_D RECD, exodeoxyribonucle 92.4 0.17 5.8E-06 55.0 6.8 26 370-395 262-287 (608)
239 2p5t_B PEZT; postsegregational 92.4 0.17 5.8E-06 48.2 6.1 31 292-322 27-57 (253)
240 2cdn_A Adenylate kinase; phosp 91.9 0.12 4.1E-06 47.2 4.2 30 293-322 16-45 (201)
241 2ewv_A Twitching motility prot 91.8 0.22 7.6E-06 50.4 6.4 25 299-323 138-162 (372)
242 2pt7_A CAG-ALFA; ATPase, prote 91.8 0.17 5.8E-06 50.3 5.4 33 299-333 173-205 (330)
243 3trf_A Shikimate kinase, SK; a 91.5 0.13 4.5E-06 46.1 4.0 25 298-322 6-30 (185)
244 1odf_A YGR205W, hypothetical 3 91.2 0.34 1.2E-05 47.1 6.7 46 276-323 12-57 (290)
245 2rhm_A Putative kinase; P-loop 91.1 0.15 5.2E-06 45.9 4.0 26 296-321 4-29 (193)
246 1ly1_A Polynucleotide kinase; 91.0 0.13 4.4E-06 45.8 3.4 23 297-319 2-24 (181)
247 2fz4_A DNA repair protein RAD2 91.0 0.51 1.8E-05 44.3 7.6 22 300-321 111-132 (237)
248 3vaa_A Shikimate kinase, SK; s 90.9 0.17 5.9E-06 46.1 4.1 24 299-322 27-50 (199)
249 3sfz_A APAF-1, apoptotic pepti 90.9 1.7 5.9E-05 51.3 13.9 46 269-320 125-170 (1249)
250 1rz3_A Hypothetical protein rb 90.8 0.47 1.6E-05 43.2 7.0 40 296-336 21-60 (201)
251 2ze6_A Isopentenyl transferase 90.6 0.19 6.5E-06 47.9 4.3 24 299-322 3-26 (253)
252 3foz_A TRNA delta(2)-isopenten 90.6 0.22 7.5E-06 48.6 4.7 27 296-322 9-35 (316)
253 2vli_A Antibiotic resistance p 90.6 0.12 4.1E-06 46.3 2.7 27 296-322 4-30 (183)
254 3kb2_A SPBC2 prophage-derived 90.4 0.17 5.8E-06 44.6 3.5 24 299-322 3-26 (173)
255 3t61_A Gluconokinase; PSI-biol 90.3 0.19 6.3E-06 45.9 3.8 25 297-321 18-42 (202)
256 1tev_A UMP-CMP kinase; ploop, 90.2 0.18 6.2E-06 45.4 3.6 25 297-321 3-27 (196)
257 3uie_A Adenylyl-sulfate kinase 90.2 0.21 7.1E-06 45.6 4.0 26 297-322 25-50 (200)
258 1n0w_A DNA repair protein RAD5 90.2 0.37 1.3E-05 45.2 5.9 22 299-320 26-47 (243)
259 1kht_A Adenylate kinase; phosp 90.1 0.19 6.6E-06 45.1 3.6 27 297-323 3-29 (192)
260 3c8u_A Fructokinase; YP_612366 89.9 0.26 8.8E-06 45.3 4.4 26 297-322 22-47 (208)
261 3iij_A Coilin-interacting nucl 89.8 0.25 8.4E-06 44.1 4.1 26 297-322 11-36 (180)
262 1knq_A Gluconate kinase; ALFA/ 89.8 0.26 8.8E-06 43.7 4.2 24 298-321 9-32 (175)
263 1zak_A Adenylate kinase; ATP:A 89.8 0.19 6.7E-06 46.6 3.5 27 296-322 4-30 (222)
264 1aky_A Adenylate kinase; ATP:A 89.7 0.22 7.5E-06 46.2 3.8 26 297-322 4-29 (220)
265 2yvu_A Probable adenylyl-sulfa 89.7 0.38 1.3E-05 43.1 5.3 28 297-324 13-40 (186)
266 1kag_A SKI, shikimate kinase I 89.7 0.18 6.2E-06 44.6 3.0 24 299-322 6-29 (173)
267 3tlx_A Adenylate kinase 2; str 89.7 0.23 8E-06 46.9 4.0 26 296-321 28-53 (243)
268 3a8t_A Adenylate isopentenyltr 89.7 0.18 6.2E-06 49.9 3.2 26 297-322 40-65 (339)
269 1ukz_A Uridylate kinase; trans 89.6 0.24 8.1E-06 45.2 3.9 28 294-321 12-39 (203)
270 2c95_A Adenylate kinase 1; tra 89.6 0.22 7.6E-06 45.0 3.7 26 297-322 9-34 (196)
271 3umf_A Adenylate kinase; rossm 89.6 0.27 9.3E-06 45.5 4.2 27 295-321 27-53 (217)
272 3llm_A ATP-dependent RNA helic 89.5 1.4 4.6E-05 41.2 9.3 20 299-318 78-97 (235)
273 2qor_A Guanylate kinase; phosp 89.4 0.2 6.8E-06 45.9 3.2 25 297-321 12-36 (204)
274 1nks_A Adenylate kinase; therm 89.4 0.33 1.1E-05 43.6 4.7 34 299-333 3-36 (194)
275 1y63_A LMAJ004144AAA protein; 89.4 0.27 9.4E-06 44.1 4.1 36 297-337 10-45 (184)
276 2iyv_A Shikimate kinase, SK; t 89.2 0.24 8.2E-06 44.3 3.6 24 299-322 4-27 (184)
277 1zd8_A GTP:AMP phosphotransfer 89.2 0.21 7.2E-06 46.6 3.3 26 296-321 6-31 (227)
278 2plr_A DTMP kinase, probable t 89.2 0.25 8.7E-06 45.2 3.8 28 297-324 4-31 (213)
279 3tau_A Guanylate kinase, GMP k 89.1 0.24 8.1E-06 45.5 3.5 26 297-322 8-33 (208)
280 3tqc_A Pantothenate kinase; bi 89.1 0.66 2.3E-05 45.7 6.9 59 259-322 59-117 (321)
281 1qf9_A UMP/CMP kinase, protein 89.1 0.29 9.9E-06 44.0 4.0 25 297-321 6-30 (194)
282 1kgd_A CASK, peripheral plasma 89.0 0.27 9.1E-06 44.0 3.7 23 299-321 7-29 (180)
283 1via_A Shikimate kinase; struc 89.0 0.23 7.9E-06 44.1 3.2 24 299-322 6-29 (175)
284 3r20_A Cytidylate kinase; stru 88.9 0.27 9.1E-06 46.1 3.7 27 296-322 8-34 (233)
285 3crm_A TRNA delta(2)-isopenten 88.9 0.31 1.1E-05 48.0 4.3 25 298-322 6-30 (323)
286 4eun_A Thermoresistant glucoki 88.9 0.28 9.4E-06 44.7 3.8 35 297-337 29-63 (200)
287 1ak2_A Adenylate kinase isoenz 88.9 0.29 9.8E-06 45.9 4.0 27 296-322 15-41 (233)
288 3a4m_A L-seryl-tRNA(SEC) kinas 88.7 0.39 1.3E-05 45.8 4.9 26 297-322 4-29 (260)
289 3cm0_A Adenylate kinase; ATP-b 88.6 0.25 8.5E-06 44.3 3.2 25 297-321 4-28 (186)
290 1g5t_A COB(I)alamin adenosyltr 88.6 2.4 8.1E-05 38.2 9.6 116 299-428 30-170 (196)
291 2zr9_A Protein RECA, recombina 88.6 0.85 2.9E-05 45.6 7.4 83 299-383 63-152 (349)
292 2pez_A Bifunctional 3'-phospho 88.6 0.45 1.5E-05 42.3 4.9 36 297-333 5-40 (179)
293 1nn5_A Similar to deoxythymidy 88.5 0.3 1E-05 44.8 3.8 28 296-323 8-35 (215)
294 2yhs_A FTSY, cell division pro 88.5 1.8 6.1E-05 45.1 9.9 36 296-333 292-327 (503)
295 1zuh_A Shikimate kinase; alpha 88.3 0.33 1.1E-05 42.6 3.8 24 299-322 9-32 (168)
296 2bwj_A Adenylate kinase 5; pho 88.3 0.29 9.8E-06 44.3 3.4 26 297-322 12-37 (199)
297 2bbw_A Adenylate kinase 4, AK4 88.3 0.31 1.1E-05 46.0 3.8 25 297-321 27-51 (246)
298 3cmu_A Protein RECA, recombina 88.3 0.41 1.4E-05 58.3 5.5 85 297-383 1427-1518(2050)
299 3e70_C DPA, signal recognition 88.2 1.4 4.6E-05 43.6 8.5 29 295-323 127-155 (328)
300 2wwf_A Thymidilate kinase, put 88.0 0.32 1.1E-05 44.5 3.6 28 296-323 9-36 (212)
301 1zp6_A Hypothetical protein AT 88.0 0.31 1E-05 43.9 3.4 34 297-334 9-42 (191)
302 3sr0_A Adenylate kinase; phosp 87.9 0.33 1.1E-05 44.6 3.5 23 299-321 2-24 (206)
303 3exa_A TRNA delta(2)-isopenten 87.8 0.34 1.2E-05 47.3 3.7 26 297-322 3-28 (322)
304 3b9q_A Chloroplast SRP recepto 87.8 3.2 0.00011 40.4 10.9 28 296-323 99-126 (302)
305 3lw7_A Adenylate kinase relate 87.7 0.32 1.1E-05 42.8 3.2 22 299-321 3-24 (179)
306 1uf9_A TT1252 protein; P-loop, 87.7 0.33 1.1E-05 44.1 3.5 26 295-320 6-31 (203)
307 2v54_A DTMP kinase, thymidylat 87.5 0.34 1.2E-05 44.1 3.4 25 297-321 4-28 (204)
308 3h1t_A Type I site-specific re 87.5 1.7 5.8E-05 46.8 9.6 40 273-321 183-222 (590)
309 1uj2_A Uridine-cytidine kinase 87.4 0.37 1.3E-05 45.7 3.7 28 295-322 20-47 (252)
310 3hr8_A Protein RECA; alpha and 87.3 1.1 3.9E-05 44.7 7.3 84 299-384 63-153 (356)
311 1e6c_A Shikimate kinase; phosp 87.2 0.35 1.2E-05 42.6 3.3 24 299-322 4-27 (173)
312 3be4_A Adenylate kinase; malar 87.2 0.32 1.1E-05 45.0 3.1 25 297-321 5-29 (217)
313 1cke_A CK, MSSA, protein (cyti 87.1 0.42 1.5E-05 44.3 3.9 24 298-321 6-29 (227)
314 2j41_A Guanylate kinase; GMP, 87.0 0.36 1.2E-05 43.9 3.3 25 297-321 6-30 (207)
315 3a00_A Guanylate kinase, GMP k 86.9 0.35 1.2E-05 43.4 3.1 24 299-322 3-26 (186)
316 3ney_A 55 kDa erythrocyte memb 86.8 0.49 1.7E-05 43.0 4.0 25 297-321 19-43 (197)
317 3asz_A Uridine kinase; cytidin 86.6 0.42 1.5E-05 43.8 3.6 26 297-322 6-31 (211)
318 2jaq_A Deoxyguanosine kinase; 86.5 0.42 1.4E-05 43.3 3.4 24 299-322 2-25 (205)
319 3fb4_A Adenylate kinase; psych 86.4 0.43 1.5E-05 43.9 3.5 23 299-321 2-24 (216)
320 3tr0_A Guanylate kinase, GMP k 86.3 0.5 1.7E-05 42.9 3.8 23 299-321 9-31 (205)
321 2pt5_A Shikimate kinase, SK; a 86.2 0.46 1.6E-05 41.6 3.4 24 299-322 2-25 (168)
322 1bif_A 6-phosphofructo-2-kinas 86.1 2.3 8E-05 44.3 9.4 29 295-323 37-65 (469)
323 3dl0_A Adenylate kinase; phosp 86.1 0.43 1.5E-05 43.9 3.3 23 299-321 2-24 (216)
324 2ga8_A Hypothetical 39.9 kDa p 86.0 0.8 2.7E-05 45.6 5.3 25 298-322 25-49 (359)
325 2bdt_A BH3686; alpha-beta prot 85.9 0.44 1.5E-05 42.8 3.2 22 299-320 4-25 (189)
326 1lvg_A Guanylate kinase, GMP k 85.6 0.46 1.6E-05 43.2 3.2 24 299-322 6-29 (198)
327 1ex7_A Guanylate kinase; subst 85.6 0.43 1.5E-05 43.0 2.9 22 300-321 4-25 (186)
328 2pbr_A DTMP kinase, thymidylat 85.6 0.73 2.5E-05 41.3 4.6 24 299-322 2-25 (195)
329 2og2_A Putative signal recogni 85.5 3.7 0.00012 41.0 10.0 28 296-323 156-183 (359)
330 2iut_A DNA translocase FTSK; n 85.3 7.8 0.00027 41.1 12.8 37 299-335 216-255 (574)
331 1m7g_A Adenylylsulfate kinase; 84.9 0.66 2.3E-05 42.5 3.9 37 297-333 25-61 (211)
332 1a7j_A Phosphoribulokinase; tr 84.7 0.56 1.9E-05 45.6 3.5 42 296-338 4-45 (290)
333 3d3q_A TRNA delta(2)-isopenten 84.7 0.61 2.1E-05 46.2 3.8 25 298-322 8-32 (340)
334 3vkw_A Replicase large subunit 84.5 3.4 0.00012 42.4 9.3 89 299-395 163-259 (446)
335 1c9k_A COBU, adenosylcobinamid 84.3 0.76 2.6E-05 41.0 3.9 21 300-320 2-22 (180)
336 1e4v_A Adenylate kinase; trans 84.0 0.62 2.1E-05 42.8 3.3 23 299-321 2-24 (214)
337 1htw_A HI0065; nucleotide-bind 83.9 0.68 2.3E-05 40.4 3.4 23 299-321 35-57 (158)
338 1vt4_I APAF-1 related killer D 83.9 4.5 0.00015 46.2 10.6 43 270-319 130-172 (1221)
339 2xb4_A Adenylate kinase; ATP-b 83.8 0.66 2.3E-05 43.0 3.5 23 299-321 2-24 (223)
340 2qt1_A Nicotinamide riboside k 83.8 0.62 2.1E-05 42.5 3.2 25 297-321 21-45 (207)
341 2f6r_A COA synthase, bifunctio 83.8 0.7 2.4E-05 44.7 3.7 26 294-319 72-97 (281)
342 1vht_A Dephospho-COA kinase; s 83.7 0.71 2.4E-05 42.5 3.6 24 296-319 3-26 (218)
343 3eph_A TRNA isopentenyltransfe 83.7 0.87 3E-05 46.1 4.5 25 299-323 4-28 (409)
344 1sq5_A Pantothenate kinase; P- 83.6 1.3 4.6E-05 43.3 5.7 28 295-322 78-105 (308)
345 2px0_A Flagellar biosynthesis 83.6 1.7 5.8E-05 42.3 6.4 28 296-323 104-131 (296)
346 2z0h_A DTMP kinase, thymidylat 83.5 0.66 2.2E-05 41.8 3.3 25 299-323 2-26 (197)
347 1znw_A Guanylate kinase, GMP k 83.4 0.66 2.2E-05 42.4 3.2 23 299-321 22-44 (207)
348 3aez_A Pantothenate kinase; tr 83.3 0.83 2.8E-05 44.9 4.1 29 295-323 88-116 (312)
349 1rj9_A FTSY, signal recognitio 83.1 1.1 3.9E-05 43.7 4.9 28 296-323 101-128 (304)
350 1z6g_A Guanylate kinase; struc 82.8 0.65 2.2E-05 42.9 3.0 23 299-321 25-47 (218)
351 1q3t_A Cytidylate kinase; nucl 82.8 0.91 3.1E-05 42.4 4.0 29 293-321 12-40 (236)
352 1ltq_A Polynucleotide kinase; 82.8 0.71 2.4E-05 45.0 3.4 24 297-320 2-25 (301)
353 4e22_A Cytidylate kinase; P-lo 82.7 0.84 2.9E-05 43.2 3.8 24 298-321 28-51 (252)
354 2jeo_A Uridine-cytidine kinase 82.6 0.88 3E-05 42.8 3.9 25 297-321 25-49 (245)
355 1s96_A Guanylate kinase, GMP k 82.5 0.74 2.5E-05 42.6 3.2 24 299-322 18-41 (219)
356 2qmh_A HPR kinase/phosphorylas 82.4 0.61 2.1E-05 42.2 2.4 23 299-321 36-58 (205)
357 1u94_A RECA protein, recombina 82.3 2.5 8.6E-05 42.2 7.2 84 299-384 65-155 (356)
358 1vma_A Cell division protein F 82.2 2 6.7E-05 42.0 6.2 29 296-324 103-131 (306)
359 4eaq_A DTMP kinase, thymidylat 82.1 1.1 3.7E-05 41.8 4.2 28 296-323 25-52 (229)
360 1jjv_A Dephospho-COA kinase; P 82.0 0.78 2.7E-05 41.8 3.2 22 298-319 3-24 (206)
361 1xp8_A RECA protein, recombina 81.9 1.8 6E-05 43.5 5.9 83 299-383 76-165 (366)
362 3zvl_A Bifunctional polynucleo 81.8 0.72 2.4E-05 47.4 3.1 27 295-321 256-282 (416)
363 2if2_A Dephospho-COA kinase; a 81.8 0.77 2.6E-05 41.7 3.0 21 299-319 3-23 (204)
364 3ake_A Cytidylate kinase; CMP 81.8 0.9 3.1E-05 41.2 3.5 24 299-322 4-27 (208)
365 1zu4_A FTSY; GTPase, signal re 81.6 3.5 0.00012 40.5 7.9 41 296-337 104-144 (320)
366 1xjc_A MOBB protein homolog; s 81.3 1.1 3.7E-05 39.5 3.7 27 298-324 5-31 (169)
367 3cmu_A Protein RECA, recombina 81.3 2.2 7.5E-05 52.1 7.3 84 299-384 1083-1173(2050)
368 2h92_A Cytidylate kinase; ross 81.0 0.92 3.2E-05 41.7 3.3 25 297-321 3-27 (219)
369 1x6v_B Bifunctional 3'-phospho 81.0 1.4 4.8E-05 47.5 5.1 37 296-333 51-87 (630)
370 1gtv_A TMK, thymidylate kinase 80.7 0.53 1.8E-05 43.1 1.5 25 299-323 2-26 (214)
371 4gp7_A Metallophosphoesterase; 80.4 1.2 4.1E-05 39.2 3.7 19 299-317 11-29 (171)
372 3nwj_A ATSK2; P loop, shikimat 80.4 0.95 3.3E-05 42.8 3.2 24 299-322 50-73 (250)
373 3thx_A DNA mismatch repair pro 79.4 0.89 3E-05 51.6 3.0 22 299-320 664-685 (934)
374 2w0m_A SSO2452; RECA, SSPF, un 79.4 1.5 5.2E-05 40.4 4.3 24 299-322 25-48 (235)
375 2ocp_A DGK, deoxyguanosine kin 79.0 1.2 4E-05 41.8 3.3 26 297-322 2-27 (241)
376 2ehv_A Hypothetical protein PH 78.9 1.1 3.6E-05 42.1 3.0 22 299-320 32-53 (251)
377 2axn_A 6-phosphofructo-2-kinas 78.9 1.3 4.4E-05 46.9 3.9 28 296-323 34-61 (520)
378 4a74_A DNA repair and recombin 78.7 1 3.6E-05 41.5 2.9 23 299-321 27-49 (231)
379 1m8p_A Sulfate adenylyltransfe 78.3 1.9 6.7E-05 46.1 5.1 39 296-334 395-433 (573)
380 3lnc_A Guanylate kinase, GMP k 78.1 0.8 2.7E-05 42.7 1.8 23 299-321 29-52 (231)
381 2v9p_A Replication protein E1; 77.7 1.4 4.7E-05 43.0 3.5 23 299-321 128-150 (305)
382 1j8m_F SRP54, signal recogniti 77.6 9.9 0.00034 36.7 9.6 40 297-337 98-137 (297)
383 1g8f_A Sulfate adenylyltransfe 77.5 2.1 7.1E-05 45.0 4.9 27 297-323 395-421 (511)
384 2wsm_A Hydrogenase expression/ 77.5 4.2 0.00014 37.1 6.7 25 298-322 31-55 (221)
385 3b85_A Phosphate starvation-in 77.1 1.3 4.3E-05 40.7 2.8 22 299-320 24-45 (208)
386 1np6_A Molybdopterin-guanine d 77.0 1.6 5.6E-05 38.6 3.4 25 299-323 8-32 (174)
387 3tif_A Uncharacterized ABC tra 76.8 1.1 3.9E-05 41.8 2.5 23 299-321 33-55 (235)
388 2grj_A Dephospho-COA kinase; T 76.7 1.6 5.4E-05 39.4 3.4 35 297-337 12-46 (192)
389 2f1r_A Molybdopterin-guanine d 76.7 0.85 2.9E-05 40.4 1.5 36 299-334 4-40 (171)
390 1svm_A Large T antigen; AAA+ f 76.7 1.8 6.1E-05 43.7 4.0 23 299-321 171-193 (377)
391 2onk_A Molybdate/tungstate ABC 76.3 1.4 4.9E-05 41.3 3.0 33 299-333 26-58 (240)
392 2dr3_A UPF0273 protein PH0284; 76.1 2.5 8.5E-05 39.4 4.7 35 299-334 25-59 (247)
393 3bwd_D RAC-like GTP-binding pr 76.1 4.6 0.00016 35.2 6.3 25 296-320 7-31 (182)
394 2cvh_A DNA repair and recombin 76.0 1.5 5.1E-05 40.1 3.0 21 299-319 22-42 (220)
395 3kta_A Chromosome segregation 75.9 1.8 6E-05 38.4 3.4 25 299-323 28-52 (182)
396 2pcj_A ABC transporter, lipopr 75.4 1.2 4.2E-05 41.2 2.3 23 299-321 32-54 (224)
397 2gza_A Type IV secretion syste 75.2 1.7 5.7E-05 43.7 3.4 33 299-333 177-209 (361)
398 3ld9_A DTMP kinase, thymidylat 75.2 2.2 7.5E-05 39.5 3.9 28 296-323 20-47 (223)
399 2v3c_C SRP54, signal recogniti 74.6 3.2 0.00011 42.7 5.4 89 295-384 97-194 (432)
400 2cbz_A Multidrug resistance-as 74.6 1.4 4.9E-05 41.2 2.5 23 299-321 33-55 (237)
401 1mv5_A LMRA, multidrug resista 74.3 1.5 5.1E-05 41.3 2.6 33 299-333 30-62 (243)
402 4edh_A DTMP kinase, thymidylat 74.3 2.3 7.7E-05 39.1 3.8 28 297-324 6-33 (213)
403 2ff7_A Alpha-hemolysin translo 74.2 1.4 4.9E-05 41.5 2.5 33 299-333 37-69 (247)
404 2eyq_A TRCF, transcription-rep 74.0 5.8 0.0002 46.3 8.0 40 272-319 607-646 (1151)
405 4g1u_C Hemin import ATP-bindin 74.0 1.6 5.5E-05 41.7 2.7 33 299-333 39-71 (266)
406 1b0u_A Histidine permease; ABC 73.9 1.5 5.1E-05 41.8 2.5 33 299-333 34-66 (262)
407 2pze_A Cystic fibrosis transme 73.9 1.6 5.4E-05 40.7 2.6 24 299-322 36-59 (229)
408 2d2e_A SUFC protein; ABC-ATPas 73.8 1.8 6.1E-05 40.9 3.0 22 299-320 31-52 (250)
409 3lv8_A DTMP kinase, thymidylat 73.8 2.2 7.6E-05 39.8 3.6 28 297-324 27-54 (236)
410 3io5_A Recombination and repai 73.7 5.7 0.00019 38.8 6.5 84 299-383 30-124 (333)
411 2ged_A SR-beta, signal recogni 73.6 3.4 0.00012 36.6 4.8 25 296-320 47-71 (193)
412 1z2a_A RAS-related protein RAB 73.5 1.9 6.6E-05 37.1 3.0 25 296-320 4-28 (168)
413 1p9r_A General secretion pathw 73.4 3.2 0.00011 42.4 5.0 26 299-324 169-194 (418)
414 3tqf_A HPR(Ser) kinase; transf 73.4 1.9 6.6E-05 38.0 2.8 22 299-320 18-39 (181)
415 3gfo_A Cobalt import ATP-bindi 73.3 1.6 5.4E-05 42.0 2.5 23 299-321 36-58 (275)
416 3lxx_A GTPase IMAP family memb 73.2 3.6 0.00012 38.2 5.0 24 297-320 29-52 (239)
417 3cmw_A Protein RECA, recombina 73.2 5.1 0.00017 48.3 7.2 84 299-384 734-824 (1706)
418 2ixe_A Antigen peptide transpo 73.2 1.6 5.3E-05 41.9 2.5 33 299-333 47-79 (271)
419 1cr0_A DNA primase/helicase; R 73.2 3 0.0001 40.3 4.6 25 299-323 37-61 (296)
420 3sop_A Neuronal-specific septi 72.9 2.1 7.1E-05 41.0 3.3 24 299-322 4-27 (270)
421 2zu0_C Probable ATP-dependent 72.7 2 6.7E-05 41.1 3.0 22 299-320 48-69 (267)
422 3v9p_A DTMP kinase, thymidylat 72.7 2.3 7.8E-05 39.5 3.4 27 297-323 25-51 (227)
423 1g6h_A High-affinity branched- 72.7 1.7 5.7E-05 41.3 2.5 33 299-333 35-67 (257)
424 2lkc_A Translation initiation 72.7 3.1 0.0001 36.2 4.2 26 295-320 6-31 (178)
425 1ji0_A ABC transporter; ATP bi 72.7 1.7 5.7E-05 40.8 2.5 33 299-333 34-66 (240)
426 1sgw_A Putative ABC transporte 72.6 1.6 5.4E-05 40.2 2.2 33 299-333 37-69 (214)
427 2wjg_A FEOB, ferrous iron tran 72.5 2.4 8.1E-05 37.5 3.4 24 296-319 6-29 (188)
428 1p5z_B DCK, deoxycytidine kina 72.4 1 3.5E-05 42.9 1.0 26 296-321 23-48 (263)
429 1nrj_B SR-beta, signal recogni 72.4 2.6 8.8E-05 38.4 3.7 25 297-321 12-36 (218)
430 2olj_A Amino acid ABC transpor 72.3 1.7 5.9E-05 41.4 2.5 33 299-333 52-84 (263)
431 2j37_W Signal recognition part 72.2 5.6 0.00019 41.7 6.6 30 295-324 99-128 (504)
432 3fvq_A Fe(3+) IONS import ATP- 72.2 1.9 6.5E-05 43.1 2.9 23 299-321 32-54 (359)
433 2oap_1 GSPE-2, type II secreti 72.1 3.5 0.00012 43.4 5.1 33 299-333 262-294 (511)
434 3cr8_A Sulfate adenylyltranfer 72.0 2.5 8.6E-05 44.9 3.9 26 298-323 370-395 (552)
435 1vpl_A ABC transporter, ATP-bi 71.7 1.8 6.2E-05 41.0 2.5 33 299-333 43-75 (256)
436 2qi9_C Vitamin B12 import ATP- 71.6 1.8 6.3E-05 40.8 2.5 32 299-333 28-59 (249)
437 2zpa_A Uncharacterized protein 71.4 14 0.0005 39.8 9.7 85 299-393 194-278 (671)
438 2xxa_A Signal recognition part 71.4 7.3 0.00025 40.0 7.2 44 295-338 98-141 (433)
439 3fdi_A Uncharacterized protein 71.4 2.6 8.9E-05 38.2 3.4 26 298-323 7-32 (201)
440 2ghi_A Transport protein; mult 71.3 1.9 6.4E-05 41.0 2.5 23 299-321 48-70 (260)
441 1z47_A CYSA, putative ABC-tran 71.2 2.2 7.4E-05 42.6 3.0 23 299-321 43-65 (355)
442 2ihy_A ABC transporter, ATP-bi 70.9 1.9 6.5E-05 41.5 2.5 33 299-333 49-81 (279)
443 2hf9_A Probable hydrogenase ni 70.8 4.5 0.00015 37.0 5.1 27 297-323 38-64 (226)
444 3rlf_A Maltose/maltodextrin im 70.5 2.3 7.8E-05 42.8 3.0 23 299-321 31-53 (381)
445 2yz2_A Putative ABC transporte 70.4 2 6.9E-05 41.0 2.5 23 299-321 35-57 (266)
446 2hxs_A RAB-26, RAS-related pro 70.4 2.7 9.3E-05 36.6 3.3 25 296-320 5-29 (178)
447 1nlf_A Regulatory protein REPA 70.3 2.6 8.7E-05 40.4 3.3 23 299-321 32-54 (279)
448 2it1_A 362AA long hypothetical 70.3 2.3 7.9E-05 42.5 3.0 23 299-321 31-53 (362)
449 2nq2_C Hypothetical ABC transp 70.2 2 7E-05 40.6 2.5 24 299-322 33-56 (253)
450 2yyz_A Sugar ABC transporter, 70.2 2.3 8E-05 42.4 3.0 23 299-321 31-53 (359)
451 2ffh_A Protein (FFH); SRP54, s 70.2 7.9 0.00027 39.5 7.0 41 296-337 97-137 (425)
452 3tmk_A Thymidylate kinase; pho 70.1 3.3 0.00011 38.1 3.8 27 297-323 5-31 (216)
453 1moz_A ARL1, ADP-ribosylation 70.0 2.8 9.7E-05 36.7 3.3 24 295-318 16-39 (183)
454 2nzj_A GTP-binding protein REM 69.9 2.6 8.8E-05 36.6 3.0 23 297-319 4-26 (175)
455 1lw7_A Transcriptional regulat 69.8 2.3 7.8E-05 42.7 2.9 24 299-322 172-195 (365)
456 1v43_A Sugar-binding transport 69.7 2.4 8.3E-05 42.6 3.0 23 299-321 39-61 (372)
457 1fzq_A ADP-ribosylation factor 69.7 2.8 9.5E-05 37.0 3.2 25 295-319 14-38 (181)
458 2fwr_A DNA repair protein RAD2 69.5 7.4 0.00025 40.3 6.9 23 299-321 110-132 (472)
459 2zts_A Putative uncharacterize 69.4 3.7 0.00013 38.2 4.2 22 299-320 32-53 (251)
460 1kao_A RAP2A; GTP-binding prot 69.4 2.7 9.2E-05 36.0 3.0 24 297-320 3-26 (167)
461 1oix_A RAS-related protein RAB 69.4 2.5 8.5E-05 37.7 2.8 25 298-322 30-54 (191)
462 3clv_A RAB5 protein, putative; 69.3 3.5 0.00012 36.7 3.8 25 296-320 6-30 (208)
463 1wms_A RAB-9, RAB9, RAS-relate 69.3 2.3 8E-05 37.0 2.6 24 297-320 7-30 (177)
464 1ky3_A GTP-binding protein YPT 69.2 2.7 9.2E-05 36.7 3.0 24 297-320 8-31 (182)
465 1g29_1 MALK, maltose transport 69.2 2.5 8.6E-05 42.5 3.0 23 299-321 31-53 (372)
466 1f2t_A RAD50 ABC-ATPase; DNA d 69.1 3.7 0.00013 35.2 3.7 26 298-323 24-49 (149)
467 2f9l_A RAB11B, member RAS onco 69.1 2.7 9.2E-05 37.7 3.0 24 298-321 6-29 (199)
468 2pjz_A Hypothetical protein ST 69.0 2.2 7.7E-05 40.6 2.5 32 299-333 32-63 (263)
469 3gmt_A Adenylate kinase; ssgci 69.0 3.2 0.00011 38.5 3.5 25 298-322 9-33 (230)
470 2fn4_A P23, RAS-related protei 68.8 3.1 0.00011 36.2 3.3 25 296-320 8-32 (181)
471 3thx_B DNA mismatch repair pro 68.6 1.4 4.7E-05 49.9 1.0 22 299-320 675-696 (918)
472 1z08_A RAS-related protein RAB 68.5 2.5 8.6E-05 36.4 2.6 24 297-320 6-29 (170)
473 3nh6_A ATP-binding cassette SU 68.5 1.6 5.6E-05 42.6 1.4 24 299-322 82-105 (306)
474 1m7b_A RND3/RHOE small GTP-bin 68.3 2.7 9.3E-05 37.1 2.8 25 296-320 6-30 (184)
475 2wji_A Ferrous iron transport 68.2 2.8 9.6E-05 36.3 2.8 22 298-319 4-25 (165)
476 1svi_A GTP-binding protein YSX 68.0 3.6 0.00012 36.5 3.6 24 296-319 22-45 (195)
477 3bc1_A RAS-related protein RAB 67.9 2.8 9.7E-05 37.0 2.9 25 296-320 10-34 (195)
478 2y8e_A RAB-protein 6, GH09086P 67.7 2.4 8.1E-05 36.9 2.3 24 297-320 14-37 (179)
479 1g16_A RAS-related protein SEC 67.7 2.9 9.9E-05 36.0 2.8 24 297-320 3-26 (170)
480 1upt_A ARL1, ADP-ribosylation 67.6 3.7 0.00013 35.3 3.6 25 296-320 6-30 (171)
481 1tq4_A IIGP1, interferon-induc 67.6 5.5 0.00019 40.6 5.2 25 297-321 69-93 (413)
482 2gf0_A GTP-binding protein DI- 67.3 3.8 0.00013 36.4 3.6 25 296-320 7-31 (199)
483 2g6b_A RAS-related protein RAB 67.3 3.2 0.00011 36.2 3.0 26 295-320 8-33 (180)
484 2oil_A CATX-8, RAS-related pro 67.2 3 0.0001 37.1 2.9 24 297-320 25-48 (193)
485 1c1y_A RAS-related protein RAP 67.2 3.2 0.00011 35.6 3.0 24 297-320 3-26 (167)
486 2vp4_A Deoxynucleoside kinase; 67.1 2.2 7.6E-05 39.6 2.0 24 297-320 20-43 (230)
487 2ce2_X GTPase HRAS; signaling 67.1 3 0.0001 35.5 2.8 23 298-320 4-26 (166)
488 4tmk_A Protein (thymidylate ki 67.0 3.9 0.00013 37.5 3.6 27 298-324 4-30 (213)
489 3d31_A Sulfate/molybdate ABC t 67.0 2.1 7.3E-05 42.6 1.9 23 299-321 28-50 (348)
490 1u8z_A RAS-related protein RAL 66.9 3.3 0.00011 35.4 3.0 24 297-320 4-27 (168)
491 4dsu_A GTPase KRAS, isoform 2B 66.8 2.8 9.7E-05 36.9 2.6 24 297-320 4-27 (189)
492 1z0j_A RAB-22, RAS-related pro 66.8 2.6 9E-05 36.3 2.4 25 297-321 6-30 (170)
493 2erx_A GTP-binding protein DI- 66.7 3.1 0.00011 35.8 2.8 23 297-319 3-25 (172)
494 2dyk_A GTP-binding protein; GT 66.6 3.4 0.00011 35.2 3.0 22 299-320 3-24 (161)
495 3hdt_A Putative kinase; struct 66.6 4.2 0.00014 37.6 3.7 26 297-322 14-39 (223)
496 2gks_A Bifunctional SAT/APS ki 66.0 5.1 0.00017 42.5 4.8 36 297-333 372-407 (546)
497 3gd7_A Fusion complex of cysti 65.9 3 0.0001 42.2 2.9 23 299-321 49-71 (390)
498 1r2q_A RAS-related protein RAB 65.8 2.4 8.3E-05 36.5 1.9 24 297-320 6-29 (170)
499 2zej_A Dardarin, leucine-rich 65.7 3.4 0.00012 36.5 2.9 22 298-319 3-24 (184)
500 2o8b_B DNA mismatch repair pro 65.7 4.7 0.00016 46.3 4.7 21 299-319 791-811 (1022)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=3.7e-36 Score=343.76 Aligned_cols=295 Identities=41% Similarity=0.712 Sum_probs=247.9
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
.+...+...++||+.+++.+...+.+...+..++++|. +++|+||+|+|||.+|+.+++.++.. ..+|+.++|+.+..
T Consensus 551 ~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 551 RLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMTEYME 629 (854)
T ss_dssp SHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEECTTTCCS
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEechhccc
Confidence 45556677899999999999999999988888888898 99999999999999999999999775 67899999999999
Q ss_pred cchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 340 KHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
.+.+.+++|.++||+|++.++.+++.++..+++|||||||+++++++++.|++++++|.+++..|++++|++++||+|||
T Consensus 630 ~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp SGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred hhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
.+...+.+.. +. + ..+ ....+.+.+.+.+.|+ |+|++||+.+++|.|++.+++.
T Consensus 710 ~~~~~~~~~~-~~---~--------------------~~~-~~l~~~v~~~~~~~f~-~~l~~Rl~~~i~~~pl~~edi~ 763 (854)
T 1qvr_A 710 LGSPLILEGL-QK---G--------------------WPY-ERIRDEVFKVLQQHFR-PEFLNRLDEIVVFRPLTKEQIR 763 (854)
T ss_dssp TTHHHHHHHH-HT---T--------------------CCH-HHHHHHHHHHHHTTSC-HHHHHTCSBCCBCCCCCHHHHH
T ss_pred cChHHHhhhc-cc---c--------------------cch-HHHHHHHHHHHHhhCC-HHHHHhcCeEEeCCCCCHHHHH
Confidence 9988775521 00 0 000 1123344455788898 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEEEEEecC
Q psy1308 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWS 578 (607)
Q Consensus 500 ~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~~ 578 (607)
.|+..++..+..++... ++.+.++++++++|++ +|+|++|+|+|++.|++.+..++++.++.++++.|++|+|+++++
T Consensus 764 ~i~~~~l~~~~~~~~~~-~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 842 (854)
T 1qvr_A 764 QIVEIQLSYLRARLAEK-RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPA 842 (854)
T ss_dssp HHHHHHHHHHHHHHHTT-TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHhC-CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEECC
Confidence 99999999999888654 7889999999999986 788899999999999999999999999999999999999999766
Q ss_pred Ccccc
Q psy1308 579 KEVSE 583 (607)
Q Consensus 579 ~~~~~ 583 (607)
+..+.
T Consensus 843 ~~~~~ 847 (854)
T 1qvr_A 843 GLVFA 847 (854)
T ss_dssp SCEEE
T ss_pred EEEEE
Confidence 65443
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=299.97 Aligned_cols=219 Identities=23% Similarity=0.234 Sum_probs=174.1
Q ss_pred CCCcCCchHHHHHHhcCChhHHHHHhcCCCccc--------ccccccCChHHHHH-----------HccCccchhccCCC
Q psy1308 25 YKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQ--------SNNTCMYNNLLFAS-----------ACSLALTLLECQSI 85 (607)
Q Consensus 25 ~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~--------~~~~~~~~~l~~a~-----------~~~~~~~~~~~~~~ 85 (607)
.++..+.|||+.||..|+.++|++|++.+.... ..+..+.++++.+. +...+..++..|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 356667899999999999999999998776432 22344556666553 23344566788999
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCC
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKK 163 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~ 163 (607)
|+||||+||..|+.++|++|++.+ ++++.++..|.||||+|+..++.+++++|+++|++++.+|. +||||+|+..|+
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~-a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~ 164 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH 164 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcC-CCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 999999999999999999999999 99999999999999999999999999999999999999765 679999999999
Q ss_pred ccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhH-HHHHHHHH
Q psy1308 164 MNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANI-KQILQKYA 242 (607)
Q Consensus 164 ~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~-~~~~~~ll 242 (607)
.+++++|+++|++++..+. .|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+.++. .++++.+.
T Consensus 165 ~~~v~~Ll~~gadvn~~~~-----~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~ 239 (269)
T 4b93_B 165 HELVALLLQHGASINASNN-----KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVP 239 (269)
T ss_dssp GGGHHHHHHTTCCTTCBCT-----TSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--
T ss_pred HHHHHHHHHCCCCCCcccc-----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHH
Confidence 9999999999999987754 49999999999999999999999999999999999999999998875 56666666
Q ss_pred HhhhhHH
Q psy1308 243 EKYADLQ 249 (607)
Q Consensus 243 ~~~~~~~ 249 (607)
..++...
T Consensus 240 ~~~~~~~ 246 (269)
T 4b93_B 240 SCVASLD 246 (269)
T ss_dssp -------
T ss_pred Hhchhhh
Confidence 6655544
No 3
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=2.7e-34 Score=291.47 Aligned_cols=300 Identities=39% Similarity=0.688 Sum_probs=262.5
Q ss_pred cccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc
Q psy1308 257 RRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS 335 (607)
Q Consensus 257 ~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a 335 (607)
.....+...+...++||+.+++.+...+.....++..+.+|. +++|+||+|+|||.+++.++..+... ..+++.++|+
T Consensus 6 ~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~~~ 84 (311)
T 4fcw_A 6 EKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMT 84 (311)
T ss_dssp HHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEEGG
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEeecc
Confidence 344567788888999999999999999999888888888888 89999999999999999999998765 6689999999
Q ss_pred cccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEE
Q psy1308 336 EYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFV 415 (607)
Q Consensus 336 ~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI 415 (607)
.+........++|.+++|.|+...+.+.+.+..++++++||||++++++++|+.|+++++++.+.+..|..+++++++||
T Consensus 85 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI 164 (311)
T 4fcw_A 85 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVII 164 (311)
T ss_dssp GCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEE
T ss_pred cccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEE
Confidence 99988889999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCH
Q psy1308 416 MTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSK 495 (607)
Q Consensus 416 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~ 495 (607)
+|||.+...+.+.... .. ......+.+...+.+.|. |+|++|++.++.|.|++.
T Consensus 165 ~ttn~~~~~i~~~~~~-----------------~~--------~~~~l~~~~~~~~~~~~~-~~l~~R~~~~~~~~p~~~ 218 (311)
T 4fcw_A 165 MTSNLGSPLILEGLQK-----------------GW--------PYERIRDEVFKVLQQHFR-PEFLNRLDEIVVFRPLTK 218 (311)
T ss_dssp EEESTTHHHHHTTTTS-----------------CC--------CSSTHHHHTHHHHHHHSC-HHHHTTCSEEEECCCCCH
T ss_pred EecccCHHHHHhhhcc-----------------cc--------cHHHHHHHHHHHHHHhCC-HHHHhcCCeEEEeCCCCH
Confidence 9999988877653210 00 000113344455677897 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEEEE
Q psy1308 496 SELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLY 574 (607)
Q Consensus 496 ~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~ 574 (607)
+++..|+..++..+..++.. .+..+.++++++++|++ +|++++|+|+|++.+++.+..++++.++.++++++++++|+
T Consensus 219 ~~~~~i~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~ 297 (311)
T 4fcw_A 219 EQIRQIVEIQMSYLRARLAE-KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVD 297 (311)
T ss_dssp HHHHHHHHHHTHHHHHHHHT-TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 99999999999998888765 47889999999999987 55559999999999999999999999999999999999999
Q ss_pred EecCCccccc
Q psy1308 575 VQWSKEVSED 584 (607)
Q Consensus 575 ~~~~~~~~~~ 584 (607)
+++++.++..
T Consensus 298 ~~~~~~~~~~ 307 (311)
T 4fcw_A 298 VGPAGLVFAV 307 (311)
T ss_dssp ECSSSEEEEC
T ss_pred EECCeEEEEe
Confidence 9998876543
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.7e-35 Score=286.87 Aligned_cols=217 Identities=21% Similarity=0.197 Sum_probs=171.2
Q ss_pred CCCcCCchHHHHHHhcCChhHHHHHhc----CCCcccccccccCChHHHHHHcc----------CccchhccCCCCCHHH
Q psy1308 25 YKRGFQSSKLFYTTQSTQADFKSCLSV----FPKIRQSNNTCMYNNLLFASACS----------LALTLLECQSIKDLTL 90 (607)
Q Consensus 25 ~~~~~g~t~L~~A~~~g~~~~v~~L~~----~~~~~~~~~~~~~~~l~~a~~~~----------~~~~~~~~~~~g~t~L 90 (607)
..+..|+||||+||..|+.+++++|+. .+......+..+.++++.|+..+ .+...+..+..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 457788999999999999999999886 56666666777778888775443 3334456677888888
Q ss_pred HHHHHcCCHHHHHHHHhcCC---CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---CCchHHHHHHcCCc
Q psy1308 91 FRAARYGSAKELKTFIENSK---LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD---LFNTVHRTAAEKKM 164 (607)
Q Consensus 91 h~A~~~g~~~~v~~Ll~~~~---~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d---~~~~l~~A~~~~~~ 164 (607)
|+|+..|+.+++++|++.+. .+++.+|..|+||||+|+..|+.+++++|+++|++++..+ ++||||+|+..|+.
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 88888888888888888872 2788888888888888888888888888888888888765 46788888888888
Q ss_pred cHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHh
Q psy1308 165 NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEK 244 (607)
Q Consensus 165 ~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~ 244 (607)
+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.++++.|..+
T Consensus 164 ~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 164 SMVQLLLQHGANVNAQMY-----SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp HHHHHHHHTTCCTTCBCT-----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred HHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 888888888888876644 388888888888888888888888888888888888888888888888888888776
Q ss_pred hh
Q psy1308 245 YA 246 (607)
Q Consensus 245 ~~ 246 (607)
++
T Consensus 239 ~a 240 (241)
T 1k1a_A 239 PA 240 (241)
T ss_dssp --
T ss_pred CC
Confidence 54
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=4.3e-35 Score=332.36 Aligned_cols=287 Identities=34% Similarity=0.584 Sum_probs=250.3
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
.+...+...++||+.+++.+..++.....++.++++|. +++|+||+|+|||.+|+.+++.+. .++++++|+.+.+
T Consensus 451 ~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~----~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 451 NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYME 526 (758)
T ss_dssp HHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT----CEEEEEEGGGCSS
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc----CCEEEEechhhcc
Confidence 35566777899999999999999999999998899998 899999999999999999999983 4699999999999
Q ss_pred cchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC
Q psy1308 340 KHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn 419 (607)
.+.+++++|.++||+|++.++.+++.++.++++|||||||+++++++++.|++++++|.+++..|++++|++++||+|||
T Consensus 527 ~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp SSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred hhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
.+...+.+...++.... ......+.+.+.|+ |+|++||+.++.|.|++.+++.
T Consensus 607 ~~~~~~~~~~~g~~~~~--------------------------~~~~~~~~~~~~~~-~~l~~R~~~~i~~~~l~~~~~~ 659 (758)
T 1r6b_X 607 AGVRETERKSIGLIHQD--------------------------NSTDAMEEIKKIFT-PEFRNRLDNIIWFDHLSTDVIH 659 (758)
T ss_dssp SSCC-------------------------------------------CHHHHHHHSC-HHHHTTCSEEEECCCCCHHHHH
T ss_pred cchhhhhhcccCccccc--------------------------hHHHHHHHHHHhcC-HHHHhhCCcceeeCCCCHHHHH
Confidence 98876654322211000 01233456677897 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEEEEEecC
Q psy1308 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWS 578 (607)
Q Consensus 500 ~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~~ 578 (607)
.|+..++..+..++... ++.+.++++++++|++ +|++.+|+|+|++.|++.+.+++++.++.+.+..|++++|+++++
T Consensus 660 ~i~~~~l~~~~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 738 (758)
T 1r6b_X 660 QVVDKFIVELQVQLDQK-GVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKE 738 (758)
T ss_dssp HHHHHHHHHHHHHHHHT-TEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHHHHC-CcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEeCC
Confidence 99999999988888664 8889999999999986 788899999999999999999999999999999999999999765
Q ss_pred C
Q psy1308 579 K 579 (607)
Q Consensus 579 ~ 579 (607)
+
T Consensus 739 ~ 739 (758)
T 1r6b_X 739 K 739 (758)
T ss_dssp G
T ss_pred c
Confidence 4
No 6
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-35 Score=316.27 Aligned_cols=308 Identities=21% Similarity=0.237 Sum_probs=222.9
Q ss_pred CCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCc----------cchhccCCCCCHHHH
Q psy1308 22 QKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLA----------LTLLECQSIKDLTLF 91 (607)
Q Consensus 22 ~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~----------~~~~~~~~~g~t~Lh 91 (607)
..+..+..|.||||+||..|+.+++++|+..+......+..+.++++.|+..++. ..++..+..|.||||
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH 85 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence 3445677788999999999999999999888877777777888888888654433 344567788889999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHH
Q psy1308 92 RAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEV 169 (607)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~ 169 (607)
+||..|+.++|++|+++| ++++.++..|.||||+|+..|+.+++++|+++|++++..+. +||||+|+..|+.+++++
T Consensus 86 ~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 164 (437)
T 1n11_A 86 CAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164 (437)
T ss_dssp HHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999888 88888888899999999999999999999988888876554 568999999999999999
Q ss_pred HHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 170 LLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 170 Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..++.++++.|++.+++..
T Consensus 165 Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 239 (437)
T 1n11_A 165 LLERDAHPNAAGK-----NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239 (437)
T ss_dssp HHHTTCCTTCCCS-----SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHhCCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9998888876644 38889999999999999999999888888888888899999998888999998888887654
Q ss_pred hhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCC-CC--CCCCCceeeeeccCCCChhHHHHHHHHHh---cc
Q psy1308 250 REKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG-WT--DDDHPLVFLFLGSSGIGKTELAKQLAFYI---HR 323 (607)
Q Consensus 250 ~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~-~~--~~~~p~~~ll~G~~G~GKt~la~~la~~l---~~ 323 (607)
..+..+.++|+.+... |..+.++.+ +...... .. ....|+.+ ....|...+++.+.+.. ..
T Consensus 240 ---~~~~~g~t~L~~A~~~---g~~~~v~~L---l~~~~~~~~~~~~g~t~L~~----A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 240 ---AESVQGVTPLHLAAQE---GHAEMVALL---LSKQANGNLGNKSGLTPLHL----VAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp ---CCCTTCCCHHHHHHHT---TCHHHHHHH---HTTTCCTTCCCTTCCCHHHH----HHHHTCHHHHHHHHHHTCCTTC
T ss_pred ---CCCCCCCCHHHHHHHC---CCHHHHHHH---HhcCCCCCCCCCCCCCHHHH----HHHcCCHHHHHHHHhCCccCCC
Confidence 2355677888554432 333333333 2221110 11 11122211 11245666677766653 22
Q ss_pred CcCCceEEeecccccccchhHhhhc
Q psy1308 324 DKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 324 ~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.+..+.++++++...++..+.++|-
T Consensus 307 ~~~~g~t~L~~A~~~g~~~~v~~Ll 331 (437)
T 1n11_A 307 TTRMGYTPLHVASHYGNIKLVKFLL 331 (437)
T ss_dssp CCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 3456778888888888877777663
No 7
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-35 Score=291.07 Aligned_cols=213 Identities=20% Similarity=0.227 Sum_probs=156.1
Q ss_pred CCCCCcCCchHHHHHHhcC-------------ChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHH
Q psy1308 23 KPYKRGFQSSKLFYTTQST-------------QADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLT 89 (607)
Q Consensus 23 ~~~~~~~g~t~L~~A~~~g-------------~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~ 89 (607)
.+..+..|+||||+|+.+| +.+++++|+..+.... ...|..|.||
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~----------------------~~~d~~g~t~ 60 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH----------------------NQTDRTGETA 60 (253)
T ss_dssp -----------------------------------------------------------------------CCCTTSCCH
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc----------------------cccCCCCCcH
Confidence 3556788999999999988 8888888887654332 2457889999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCC--CCchHHHHHHcCCccH
Q psy1308 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA-NPNLGD--LFNTVHRTAAEKKMNP 166 (607)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-~~~~~d--~~~~l~~A~~~~~~~~ 166 (607)
||+||..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|+ +++..+ ++||||+|+..|+.++
T Consensus 61 L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 139 (253)
T 1yyh_A 61 LHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 139 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSH
T ss_pred HHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHH
Confidence 99999999999999999998 8999999999999999999999999999999987 777765 4679999999999999
Q ss_pred HHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhh
Q psy1308 167 FEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246 (607)
Q Consensus 167 ~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~ 246 (607)
+++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|+
T Consensus 140 v~~Ll~~g~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga 214 (253)
T 1yyh_A 140 LEDLINSHADVNAVDD-----LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214 (253)
T ss_dssp HHHHHHTTCCTTCBCT-----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 9999999999887744 49999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHhhHHHhhcccccHHHHH
Q psy1308 247 DLQREKEAEERRKYPLEQRL 266 (607)
Q Consensus 247 ~~~~~~~~~~~~~~~L~~~l 266 (607)
+... .+..+.+|+..+.
T Consensus 215 ~~~~---~d~~g~tpl~~A~ 231 (253)
T 1yyh_A 215 NRDI---TDHMDRLPRDIAQ 231 (253)
T ss_dssp CTTC---CCTTCCCHHHHHH
T ss_pred Cccc---cccCCCCHHHHHH
Confidence 8663 4667888885544
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=8.2e-36 Score=297.70 Aligned_cols=214 Identities=21% Similarity=0.189 Sum_probs=183.0
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHH
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELK 103 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~ 103 (607)
+..+..|+||||+||..|+.+++++|+..+.... .++..+..|.||||+||..|+.++|+
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------------------~~~~~~~~g~t~L~~A~~~g~~~~v~ 62 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--------------------YLDLQNDLGQTALHLAAILGEASTVE 62 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG--------------------GGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--------------------cccccCCCCCCHHHHHHHcCCHHHHH
Confidence 3467789999999999999999999987643321 13567889999999999999999999
Q ss_pred HHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--------------------------------------
Q psy1308 104 TFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN-------------------------------------- 145 (607)
Q Consensus 104 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-------------------------------------- 145 (607)
+|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 63 ~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (282)
T 1oy3_D 63 KLYAAG-AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141 (282)
T ss_dssp HHHHTT-CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------
T ss_pred HHHHcC-CCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhh
Confidence 999998 99999999999999999999999999999998866
Q ss_pred ---------CCCCC--CCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 146 ---------PNLGD--LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 146 ---------~~~~d--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
++..+ ++||||+|+..|+.+++++|+++|++++..+.. .|+||||+|+..|+.+++++|+++|+|
T Consensus 142 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~----~g~tpL~~A~~~~~~~~v~~Ll~~gad 217 (282)
T 1oy3_D 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT----CGRTPLHLAVEAQAASVLELLLKAGAD 217 (282)
T ss_dssp --CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT----TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----CCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 44443 467999999999999999999999999877432 399999999999999999999999999
Q ss_pred CCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHH
Q psy1308 215 PTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQR 265 (607)
Q Consensus 215 ~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~ 265 (607)
++.+|..|+||||+|+..++.+++++|+++|++.. ..+..+.+|+..+
T Consensus 218 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---~~~~~g~tpl~~a 265 (282)
T 1oy3_D 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP---EDGGDKLSPCSSS 265 (282)
T ss_dssp TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC---CCC----------
T ss_pred CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC---cCCCccccccccc
Confidence 99999999999999999999999999999999976 3466788888543
No 9
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.5e-34 Score=279.83 Aligned_cols=161 Identities=24% Similarity=0.261 Sum_probs=118.2
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHH
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRT 158 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A 158 (607)
..+..|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|+++|++++..+. +||||+|
T Consensus 68 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 146 (231)
T 3aji_A 68 DKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCHHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 45666777777777777777777777776 77777777777777777777777777777777777776553 4577777
Q ss_pred HHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHH
Q psy1308 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQIL 238 (607)
Q Consensus 159 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~ 238 (607)
+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.+++
T Consensus 147 ~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~ 221 (231)
T 3aji_A 147 AAKGNLKMVHILLFYKASTNIQDT-----EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILK 221 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCSCCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCccccCC-----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHH
Confidence 777777777777777777766533 377777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhhh
Q psy1308 239 QKYAEKYAD 247 (607)
Q Consensus 239 ~~ll~~~~~ 247 (607)
++|.+.+++
T Consensus 222 ~lL~~~~a~ 230 (231)
T 3aji_A 222 RLAEGEEAS 230 (231)
T ss_dssp HHHHHHHHC
T ss_pred HHHcccccc
Confidence 777766653
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.6e-35 Score=310.08 Aligned_cols=324 Identities=19% Similarity=0.217 Sum_probs=263.5
Q ss_pred hhhhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCc------
Q psy1308 3 RILVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLA------ 76 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~------ 76 (607)
.+.....+++..++.. ....+..+..|.||||+||..|+.+++++|+..+......+..+.++++.|+..++.
T Consensus 21 Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 99 (437)
T 1n11_A 21 ASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99 (437)
T ss_dssp HHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 3445566677777765 345566788899999999999999999999999988888888899999999755543
Q ss_pred ----cchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-
Q psy1308 77 ----LTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL- 151 (607)
Q Consensus 77 ----~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~- 151 (607)
...+..+..|.||||+|+..|+.+++++|++.+ ++++..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 100 l~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 178 (437)
T 1n11_A 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178 (437)
T ss_dssp HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence 344667889999999999999999999999998 89999999999999999999999999999999999998764
Q ss_pred -CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchh
Q psy1308 152 -FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230 (607)
Q Consensus 152 -~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~ 230 (607)
.||||+|+..++.+++++|+++|++++..+ ..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 179 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 253 (437)
T 1n11_A 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-----WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253 (437)
T ss_dssp CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC-----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcC-----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 679999999999999999999999987664 34999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCC----CCCCCceeeeeccC
Q psy1308 231 DANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWT----DDDHPLVFLFLGSS 306 (607)
Q Consensus 231 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~----~~~~p~~~ll~G~~ 306 (607)
..|+.+++++|++.+++... .+..+.++|+.+... |....++.+ +... .... ...+|+.+ ..
T Consensus 254 ~~g~~~~v~~Ll~~~~~~~~---~~~~g~t~L~~A~~~---~~~~~~~~L---l~~g-~~~~~~~~~g~t~L~~----A~ 319 (437)
T 1n11_A 254 QEGHAEMVALLLSKQANGNL---GNKSGLTPLHLVAQE---GHVPVADVL---IKHG-VMVDATTRMGYTPLHV----AS 319 (437)
T ss_dssp HTTCHHHHHHHHTTTCCTTC---CCTTCCCHHHHHHHH---TCHHHHHHH---HHHT-CCTTCCCSSCCCHHHH----HH
T ss_pred HCCCHHHHHHHHhcCCCCCC---CCCCCCCHHHHHHHc---CCHHHHHHH---HhCC-ccCCCCCCCCCCHHHH----HH
Confidence 99999999999999887653 356788899655432 333444433 3322 1111 12223322 22
Q ss_pred CCChhHHHHHHHHHh---ccCcCCceEEeecccccccchhHhhh
Q psy1308 307 GIGKTELAKQLAFYI---HRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 307 G~GKt~la~~la~~l---~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..|...+++.|.+.. +..+..+.++++++...++.++.++|
T Consensus 320 ~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~L 363 (437)
T 1n11_A 320 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363 (437)
T ss_dssp HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHH
Confidence 356778888887753 33446788999999999988888877
No 11
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=4.5e-34 Score=323.30 Aligned_cols=273 Identities=38% Similarity=0.671 Sum_probs=233.4
Q ss_pred ccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCc-eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccc
Q psy1308 258 RKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSE 336 (607)
Q Consensus 258 ~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~-~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~ 336 (607)
....+...+...++||+.+++.+...+.+...+...+.+|. +++|+||+|||||.+|+.+++.++.. ..+|++++|+.
T Consensus 481 ~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~s~ 559 (758)
T 3pxi_A 481 KLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-EESMIRIDMSE 559 (758)
T ss_dssp CC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEGGG
T ss_pred HHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEechh
Confidence 44567778888899999999999999999998888889998 89999999999999999999999775 77899999999
Q ss_pred ccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEE
Q psy1308 337 YQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVM 416 (607)
Q Consensus 337 ~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ 416 (607)
+.+.+... ++.+++.++..+++|||||||+++++++++.|++++++|.+++.+|+++++.+++||+
T Consensus 560 ~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 560 YMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp GCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred cccccccc--------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 97754432 4567888999999999999999999999999999999999999999999999999999
Q ss_pred ecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHH
Q psy1308 417 TSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKS 496 (607)
Q Consensus 417 tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~ 496 (607)
|||.+... .......+.+.|+ |+|++||+.++.|.|++.+
T Consensus 626 ttn~~~~~---------------------------------------~~~~~~~~~~~f~-p~l~~Rl~~~i~~~~l~~~ 665 (758)
T 3pxi_A 626 TSNVGASE---------------------------------------KDKVMGELKRAFR-PEFINRIDEIIVFHSLEKK 665 (758)
T ss_dssp EESSSTTC---------------------------------------CHHHHHHHHHHSC-HHHHTTSSEEEECC--CHH
T ss_pred eCCCChhh---------------------------------------HHHHHHHHHhhCC-HHHHhhCCeEEecCCCCHH
Confidence 99976542 0112334566787 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEEEEE
Q psy1308 497 ELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYV 575 (607)
Q Consensus 497 ~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~ 575 (607)
++..|+..++..+.+++... ++.+.++++++++|++ +|+|++|+|+|+++|++.+.+++++.++.+.++.|++++|++
T Consensus 666 ~~~~i~~~~l~~~~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~~ 744 (758)
T 3pxi_A 666 HLTEIVSLMSDQLTKRLKEQ-DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDV 744 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 99999999999999988765 8899999999999986 899999999999999999999999999999999999999999
Q ss_pred ecCCcccccCC
Q psy1308 576 QWSKEVSEDSA 586 (607)
Q Consensus 576 ~~~~~~~~~~~ 586 (607)
++++..+....
T Consensus 745 ~~~~~~~~~~~ 755 (758)
T 3pxi_A 745 EDGEFVVKTTA 755 (758)
T ss_dssp SSSSEEEEECC
T ss_pred ECCEEEEEEec
Confidence 98876655443
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.5e-34 Score=297.72 Aligned_cols=222 Identities=20% Similarity=0.182 Sum_probs=189.7
Q ss_pred hhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCH
Q psy1308 9 RQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDL 88 (607)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t 88 (607)
.+.+..++..+....+..+..|+||||+||..|+.+++++|++.+.. ++..+..|.|
T Consensus 37 ~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------------------~~~~~~~g~t 93 (351)
T 3utm_A 37 EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-----------------------VHAKDKGGLV 93 (351)
T ss_dssp HHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------TTCCCTTCCC
T ss_pred HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------------CCccCCCCCc
Confidence 33444555555555556677777777777777777777777766543 3466789999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC------------------
Q psy1308 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD------------------ 150 (607)
Q Consensus 89 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d------------------ 150 (607)
|||+|+..|+.+++++|++++ ++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus 94 ~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 94 PLHNACSYGHYEVTELLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence 999999999999999999998 9999999999999999999999999999999999987643
Q ss_pred --------------------------------------CCchHHHHHHcC---CccHHHHHHhcCCCccccCCCCcCcCC
Q psy1308 151 --------------------------------------LFNTVHRTAAEK---KMNPFEVLLKREDEFNDVLNPNMTFLG 189 (607)
Q Consensus 151 --------------------------------------~~~~l~~A~~~~---~~~~~~~Ll~~g~~~~~~~~~~~d~~g 189 (607)
++||||+|+..+ ..+++++|+++|++++..+. .|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~-----~g 247 (351)
T 3utm_A 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-----DF 247 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT-----TC
T ss_pred HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC-----CC
Confidence 357999999994 47899999999999987744 49
Q ss_pred cchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccH
Q psy1308 190 FSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPL 262 (607)
Q Consensus 190 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L 262 (607)
+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|++... .+..+.+++
T Consensus 248 ~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~---~~~~g~tal 317 (351)
T 3utm_A 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI---ISLQGFTAA 317 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC---cCCCCCChh
Confidence 9999999999999999999999999999999999999999999999999999999998763 466788888
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.5e-35 Score=285.73 Aligned_cols=212 Identities=18% Similarity=0.136 Sum_probs=178.6
Q ss_pred hhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCC
Q psy1308 8 RRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKD 87 (607)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~ 87 (607)
..+++..++.......+..+..|.||||+||..|+.+++++|++.+... +..+..|.
T Consensus 35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~~~g~ 91 (253)
T 1yyh_A 35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-----------------------NIQDNMGR 91 (253)
T ss_dssp -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------TCCCTTSC
T ss_pred ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----------------------CCCCCCCC
Confidence 3455555665555444455789999999999999999999999876543 35678899
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCcc
Q psy1308 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMN 165 (607)
Q Consensus 88 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~ 165 (607)
||||+|+..|+.+++++|++++..+++.++..|.||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+
T Consensus 92 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~ 171 (253)
T 1yyh_A 92 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171 (253)
T ss_dssp CHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999999569999999999999999999999999999999999998774 67999999999999
Q ss_pred HHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 166 PFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 166 ~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.+++++|....
T Consensus 172 ~v~~Ll~~ga~~~~~~~-----~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 172 AAVVLLKNGANKDMQNN-----REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHHHHTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HHHHHHHcCCCCCCcCC-----CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999987744 4999999999999999999999999999999999999999999999999999998765
Q ss_pred hh
Q psy1308 246 AD 247 (607)
Q Consensus 246 ~~ 247 (607)
..
T Consensus 247 ~~ 248 (253)
T 1yyh_A 247 HH 248 (253)
T ss_dssp --
T ss_pred hh
Confidence 44
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=287.98 Aligned_cols=201 Identities=18% Similarity=0.117 Sum_probs=175.6
Q ss_pred CCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhc
Q psy1308 29 FQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIEN 108 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 108 (607)
.|+||||+||..|+.+++++|+..+... +..|..|.||||+|+..|+.+++++|+++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 58 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV-----------------------NIITADHVSPLHEACLGGHLSCVKILLKH 58 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS-----------------------SCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC-----------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 4889999999999999999999876443 35677899999999999999999999999
Q ss_pred CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCc
Q psy1308 109 SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD-LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTF 187 (607)
Q Consensus 109 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~ 187 (607)
| ++++.+|..|+||||+|+..|+.+++++|+++|++++..+ ++||||+|+..|+.+++++|+++|++++..+.
T Consensus 59 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----- 132 (261)
T 2xai_A 59 G-AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS----- 132 (261)
T ss_dssp T-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT-----
T ss_pred C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCC-----
Confidence 8 8999999999999999999999999999999999988643 47799999999999999999999998887644
Q ss_pred CCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccH
Q psy1308 188 LGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPL 262 (607)
Q Consensus 188 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L 262 (607)
.|+||||+|+..|+.+++++|+++|++++. |..|+||||+|+..++.+++++|++.|++.. ..+..+.+|+
T Consensus 133 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~---~~d~~g~tpl 203 (261)
T 2xai_A 133 HLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQ---AKNAEGKRPV 203 (261)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCGG
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCCChh
Confidence 489999999999999999999999999985 8889999999999999999999999998866 3467788888
No 15
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.5e-34 Score=278.33 Aligned_cols=210 Identities=19% Similarity=0.134 Sum_probs=188.1
Q ss_pred HHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHH
Q psy1308 12 VLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLF 91 (607)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh 91 (607)
+..++.+........+..|.||||+||..|+.+++++|++.+... +..+..|.||||
T Consensus 7 i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~~~g~t~L~ 63 (223)
T 2f8y_A 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-----------------------NIQDNMGRTPLH 63 (223)
T ss_dssp EETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------TCCCTTSCCHHH
T ss_pred HHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-----------------------CCcCCCCCCHHH
Confidence 334444444444445788999999999999999999999876443 356788999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHH
Q psy1308 92 RAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEV 169 (607)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~ 169 (607)
+|+..|+.+++++|++.+..+++.++..|.||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+++++
T Consensus 64 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 143 (223)
T 2f8y_A 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143 (223)
T ss_dssp HHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999999999999669999999999999999999999999999999999998764 679999999999999999
Q ss_pred HHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 170 LLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 170 Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.+++++|++.|+...
T Consensus 144 Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 144 LLKNGANKDMQNN-----REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHTTCCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHcCCCCCCcCC-----CCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 9999999987744 49999999999999999999999999999999999999999999999999999999987643
No 16
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-34 Score=284.82 Aligned_cols=238 Identities=21% Similarity=0.181 Sum_probs=178.1
Q ss_pred hchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHcc----------C
Q psy1308 6 VQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACS----------L 75 (607)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~----------~ 75 (607)
...-+++..+++.........+..|.||||+|+..|+.+++++|++.+......+..+.++++.|...+ .
T Consensus 15 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94 (285)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 344556666666554433333677889999999999999999999888777777777778887775333 3
Q ss_pred ccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccC----------CCCCCcHHHHHHHcCCHHHHHHHHHc-CC
Q psy1308 76 ALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMR----------HPLGWTPLHVAAINGKVDNVRVLLEA-GA 144 (607)
Q Consensus 76 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga 144 (607)
+..++..+..|.||||+|+..|+.+++++|++.+ ++++.+ +..|.||||+|+..|+.+++++|+++ |+
T Consensus 95 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 173 (285)
T 1wdy_A 95 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173 (285)
T ss_dssp TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC
T ss_pred CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC
Confidence 3344566777888888888888888888888877 777766 66778888888888888888888876 78
Q ss_pred CCCCCCC--CchHHHHHHcCC----ccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHh-cCCCCCc
Q psy1308 145 NPNLGDL--FNTVHRTAAEKK----MNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLK-SGADPTV 217 (607)
Q Consensus 145 ~~~~~d~--~~~l~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~ 217 (607)
+++..|. +||||+|+..++ .+++++|+++|++++..+. .|+||||+|+..|+.+++++|++ .|++++.
T Consensus 174 ~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~ 248 (285)
T 1wdy_A 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-----RGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248 (285)
T ss_dssp CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-----TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCC-----CCCcHHHHHHHcCCHHHHHHHHhccCCCccc
Confidence 7777654 558888888777 6777888888887776543 37888888888888888888887 6788888
Q ss_pred cCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 218 KDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 218 ~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
+|..|+||||+|+..++.+++++|+++|++..
T Consensus 249 ~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 249 TDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888777654
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.9e-34 Score=276.85 Aligned_cols=226 Identities=20% Similarity=0.226 Sum_probs=157.1
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHH
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELK 103 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~ 103 (607)
+..+..|.||||+||..|+.+++++|+..+.... ..+..|.||||+|+..|+.++++
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------------------~~~~~g~t~L~~A~~~~~~~~v~ 61 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-----------------------TCSEDQRTPLMEAAENNHLEAVK 61 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----------------------CCCTTCCCHHHHHHHTTCHHHHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-----------------------ccCCCCCCHHHHHHHhCCHHHHH
Confidence 4567789999999999999999999998875544 34556777777777777777777
Q ss_pred HHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCcccc
Q psy1308 104 TFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG-ANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDV 180 (607)
Q Consensus 104 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 180 (607)
+|++.+ ++++.++..|.||||+|+..|+.+++++|+++| ++++..+. +||||+|+..++.+++++|+++|++++..
T Consensus 62 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 140 (237)
T 3b7b_A 62 YLIKAG-ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140 (237)
T ss_dssp HHHTTT-CCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHhCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence 777766 677777777777777777777777777777776 56665543 45777777777777777777777766655
Q ss_pred CCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccc
Q psy1308 181 LNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKY 260 (607)
Q Consensus 181 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 260 (607)
+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++... .+..+.+
T Consensus 141 ~~-----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~---~d~~g~t 212 (237)
T 3b7b_A 141 DN-----EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL---KNKEGET 212 (237)
T ss_dssp CT-----TSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC---CCTTSCC
T ss_pred CC-----CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc---cCCCCCC
Confidence 33 377777777777777777777777777777777777777777777777777777777766542 3456666
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHH
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAI 284 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i 284 (607)
|++.+.. .++...+..+.+.+
T Consensus 213 ~l~~A~~---~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 213 PLQCASL---NSQVWSALQMSKAL 233 (237)
T ss_dssp HHHHSCT---TCHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHh
Confidence 6654432 24444444444443
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=6.6e-35 Score=302.82 Aligned_cols=227 Identities=15% Similarity=0.130 Sum_probs=198.2
Q ss_pred CCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccch--------hccCCCCCHHHHHHH
Q psy1308 23 KPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTL--------LECQSIKDLTLFRAA 94 (607)
Q Consensus 23 ~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~--------~~~~~~g~t~Lh~A~ 94 (607)
.+..+..|.||||+||..|+.+++++|+..+......+..+.+++++|+..++...+ ...+..|.||||+|+
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAV 92 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHH
Confidence 345678899999999999999999999999988888889999999999876654432 223348999999999
Q ss_pred HcCCHHHHHHHHhc----CCCCCcc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCC
Q psy1308 95 RYGSAKELKTFIEN----SKLDVNM-----------------RHPLGWTPLHVAAING--KVDNVRVLLEAGANPNLGDL 151 (607)
Q Consensus 95 ~~g~~~~v~~Ll~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~ 151 (607)
..|+.++|++|++. + .+++. +|..|.||||+|+..| +.++|++|+++|++++..|.
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~ 171 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERG-QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT
T ss_pred HcCCHHHHHHHHHhccccC-CCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC
Confidence 99999999999998 6 77776 8889999999999999 99999999999999999775
Q ss_pred --CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcch
Q psy1308 152 --FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229 (607)
Q Consensus 152 --~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A 229 (607)
+||||+|+..|+.+++++|+++|++....+-+..|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus 172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 679999999999999999999999822222223355599999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhhHHh
Q psy1308 230 EDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 230 ~~~~~~~~~~~ll~~~~~~~~ 250 (607)
+..|+.+++++|++++++...
T Consensus 252 ~~~g~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 252 VRAAMVLLTKELLQKTDVFLI 272 (364)
T ss_dssp HHTCCHHHHHHHHHHSCHHHH
T ss_pred HHhChHHHHHHHHHcCCchhh
Confidence 999999999999999887653
No 19
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3e-34 Score=278.10 Aligned_cols=192 Identities=21% Similarity=0.226 Sum_probs=175.5
Q ss_pred CCchHHHHHHhcCChhHHHHHhcC-CCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHh
Q psy1308 29 FQSSKLFYTTQSTQADFKSCLSVF-PKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIE 107 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~~v~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 107 (607)
.|+||||+||..|+.+++++|+.. +.. ++..|..|+||||+||..|+.+++++|++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-----------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 58 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-----------------------VHQRGAMGETALHIAALYDNLEAAMVLME 58 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-----------------------cccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 589999999999999999999876 332 24678899999999999999999999999
Q ss_pred cCCCCC-----ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---------------CCchHHHHHHcCCccHH
Q psy1308 108 NSKLDV-----NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD---------------LFNTVHRTAAEKKMNPF 167 (607)
Q Consensus 108 ~~~~~~-----~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d---------------~~~~l~~A~~~~~~~~~ 167 (607)
.+ +++ +.+|..|+||||+|+..|+.+++++|+++|++++..+ ++||||+|+..|+.+++
T Consensus 59 ~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 137 (232)
T 2rfa_A 59 AA-PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137 (232)
T ss_dssp HC-GGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHH
T ss_pred cC-chhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHH
Confidence 98 776 6778899999999999999999999999999999864 67899999999999999
Q ss_pred HHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHH----HHHHhcCCCC------CccCCCCCCCCcchhhhhHHHH
Q psy1308 168 EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV----ELLLKSGADP------TVKDNSGHIPSDYAEDANIKQI 237 (607)
Q Consensus 168 ~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v----~~Ll~~gad~------~~~d~~g~Tpl~~A~~~~~~~~ 237 (607)
++|+++|++++..+. .|+||||+|+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.++
T Consensus 138 ~~Ll~~ga~~~~~d~-----~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~ 212 (232)
T 2rfa_A 138 RLLIEHGADIRAQDS-----LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212 (232)
T ss_dssp HHHHHTTCCTTCCCT-----TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHCCCCCCCCCC-----CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHH
Confidence 999999999987754 499999999999999988 9999999998 5899999999999999999999
Q ss_pred HHHHHHhhhhHH
Q psy1308 238 LQKYAEKYADLQ 249 (607)
Q Consensus 238 ~~~ll~~~~~~~ 249 (607)
+++|+++++...
T Consensus 213 v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 213 FQHLMQKRKHIA 224 (232)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHhcCccch
Confidence 999999998755
No 20
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.5e-34 Score=274.60 Aligned_cols=207 Identities=21% Similarity=0.236 Sum_probs=188.5
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFI 106 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll 106 (607)
++.++||||+|+..|+.+.+++|+..... ..+..+..|.||||+|+..|+.+++++|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~----------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 60 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKS----------------------LATRTDQDSRTALHWACSAGHTEIVEFLL 60 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGG----------------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchh----------------------hhhcCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 45689999999999999999999865321 12467889999999999999999999999
Q ss_pred hcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCC
Q psy1308 107 ENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPN 184 (607)
Q Consensus 107 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 184 (607)
+.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++..+. +||||+|+..++.+++++|+++|++++..+.
T Consensus 61 ~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-- 137 (231)
T 3aji_A 61 QLG-VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-- 137 (231)
T ss_dssp HTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--
T ss_pred HhC-CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--
Confidence 998 99999999999999999999999999999999999998765 6799999999999999999999999887644
Q ss_pred cCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHH
Q psy1308 185 MTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQ 264 (607)
Q Consensus 185 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~ 264 (607)
.|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|++.. ..+..+.+|+..
T Consensus 138 ---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~~g~t~l~~ 211 (231)
T 3aji_A 138 ---YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY---IENKEEKTPLQV 211 (231)
T ss_dssp ---TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC---CCCTTSCCHHHH
T ss_pred ---CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC---CCCCCCCCHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999875 346778888843
No 21
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.2e-34 Score=276.96 Aligned_cols=204 Identities=14% Similarity=0.138 Sum_probs=170.6
Q ss_pred CCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhc
Q psy1308 29 FQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIEN 108 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 108 (607)
.|+||||+||..|+.+++++|+..+.... ...+..|.||||+|+..|+.+++++|++.
T Consensus 1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 58 (228)
T 2dzn_A 1 MSNYPLHQACMENEFFKVQELLHSKPSLL----------------------LQKDQDGRIPLHWSVSFQAHEITSFLLSK 58 (228)
T ss_dssp --CCHHHHHHHTTCHHHHHHHHHHCGGGT----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccHHHHHHHhCCHHHHHHHHhcCcccc----------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 47899999999999999999987653322 24678889999999999999999999998
Q ss_pred C-CCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCC
Q psy1308 109 S-KLDVNM-RHPLGWTPLHVAAINGKVDNVRVLLEAG--ANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLN 182 (607)
Q Consensus 109 ~-~~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~g--a~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 182 (607)
+ ..+++. ++..|+||||+|+..|+.+++++|+++| ++++..+. +||||+|+..++.+++++|+++|++++..+.
T Consensus 59 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 138 (228)
T 2dzn_A 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138 (228)
T ss_dssp CTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred cccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC
Confidence 7 234444 7788999999999999999999999988 77777654 6699999999999999999999998887644
Q ss_pred CCcCcCCcchhhHHHhcCCHHHHHHHHhcC-CCCCccCCCCCCCCcchhhhhHHHHHHHHH-HhhhhHHhhHHHhhcccc
Q psy1308 183 PNMTFLGFSALHYGVVAGNTEVVELLLKSG-ADPTVKDNSGHIPSDYAEDANIKQILQKYA-EKYADLQREKEAEERRKY 260 (607)
Q Consensus 183 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~ 260 (607)
.|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+++++|+ +.|++... .+..+.+
T Consensus 139 -----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~---~~~~g~t 210 (228)
T 2dzn_A 139 -----FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL---VDNKGAK 210 (228)
T ss_dssp -----TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC---BCTTSCB
T ss_pred -----CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc---cCCCCCc
Confidence 4899999999999999999999998 999999999999999999999999999999 77887653 4567788
Q ss_pred cH
Q psy1308 261 PL 262 (607)
Q Consensus 261 ~L 262 (607)
++
T Consensus 211 ~l 212 (228)
T 2dzn_A 211 AE 212 (228)
T ss_dssp GG
T ss_pred HH
Confidence 88
No 22
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=281.63 Aligned_cols=211 Identities=18% Similarity=0.082 Sum_probs=118.3
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHcc----------CccchhccCCCCCHHHHHH
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACS----------LALTLLECQSIKDLTLFRA 93 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~----------~~~~~~~~~~~g~t~Lh~A 93 (607)
+..+..|.||||+||..|+.+++++|+..+......+..+.+++++|+..+ .+..++..+..|.||||+|
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A 132 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA 132 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 456888999999999999999999999987666555555555555553222 1222334445555555555
Q ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHH
Q psy1308 94 ARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLL 171 (607)
Q Consensus 94 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll 171 (607)
+..|+.+++++|++.+ ++++..+ .|.||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+++++|+
T Consensus 133 ~~~~~~~~v~~Ll~~g-~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 210 (285)
T 3d9h_A 133 CVSGSWDCVNLLLQHG-ASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL 210 (285)
T ss_dssp HHHTCHHHHHHHHHTT-CCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCHHHHHHHHHHCC-CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 5555555555555554 4444332 255555555555555555555555555554433 33555555555555555555
Q ss_pred hcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHh
Q psy1308 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEK 244 (607)
Q Consensus 172 ~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~ 244 (607)
++|++++. |..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+. +.+++++|+++
T Consensus 211 ~~ga~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~ 275 (285)
T 3d9h_A 211 ESGADVNQ------GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER 275 (285)
T ss_dssp HTTCCTTC------CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred HCCCCCCC------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence 55555441 2225555555555555555555555555555555555555555552 23445555544
No 23
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4e-33 Score=286.19 Aligned_cols=239 Identities=21% Similarity=0.194 Sum_probs=203.2
Q ss_pred hhhchhhhHHHHHhhcccCCCCCC-cCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHc---------
Q psy1308 4 ILVQRRQLVLCILSNYFKQKPYKR-GFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASAC--------- 73 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~--------- 73 (607)
+.....+++..|++. ....+..+ ..|.||||+||..|+.+++++|++.+......+..+.++++.+...
T Consensus 33 v~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (337)
T 4g8k_A 33 VQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF 111 (337)
T ss_dssp HHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHh
Confidence 334455666777765 34445444 4599999999999999999999999998888888888888777433
Q ss_pred -cCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccC----------CCCCCcHHHHHHHcCCHHHHHHHHH-
Q psy1308 74 -SLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMR----------HPLGWTPLHVAAINGKVDNVRVLLE- 141 (607)
Q Consensus 74 -~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~~v~~Ll~- 141 (607)
.....++..|..|.||||+|+..|+.+++++|+++| ++++.. +..|.||||+|+..|+.++|++|++
T Consensus 112 ~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g-a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~ 190 (337)
T 4g8k_A 112 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190 (337)
T ss_dssp HTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred hhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC-CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc
Confidence 344456788999999999999999999999999998 887754 4468999999999999999999996
Q ss_pred cCCCCCCCCC--CchHHHHHHcCCc----cHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhc-CCC
Q psy1308 142 AGANPNLGDL--FNTVHRTAAEKKM----NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS-GAD 214 (607)
Q Consensus 142 ~ga~~~~~d~--~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad 214 (607)
.|++++..|. .+|+|+++..+.. .++++|+++|++++..+. .|+||||+|+..|+.+++++|++. |++
T Consensus 191 ~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~-----~g~t~L~~a~~~~~~~~v~~Ll~~~~~~ 265 (337)
T 4g8k_A 191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-----RGKTPLILAVEKKHLGLVQRLLEQEHIE 265 (337)
T ss_dssp SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-----GGCCHHHHHHHTTCHHHHHHHHTSTTCC
T ss_pred cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHhhhhHHHHHHHHhcCCc
Confidence 5999999876 5699988876553 478999999999987744 499999999999999999999985 899
Q ss_pred CCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 215 PTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 215 ~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
++.+|.+|+||||+|+..|+.+++++|+++|++..
T Consensus 266 vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 266 INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300 (337)
T ss_dssp TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999864
No 24
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.2e-34 Score=281.76 Aligned_cols=201 Identities=20% Similarity=0.160 Sum_probs=176.5
Q ss_pred CCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHH
Q psy1308 25 YKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKT 104 (607)
Q Consensus 25 ~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ 104 (607)
..+..|+||||+|+..|+.+++++|+..+... ...++..+..|.||||+|+..|+.++|++
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 63 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-------------------LAFLNFQNNLQQTPLHLAVITNQPEIAEA 63 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC------------------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhcc-------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHH
Confidence 45678999999999999999999998764321 12335678899999999999999999999
Q ss_pred HHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------CCC--CCCchHHHHHHcCCccHHHHHHhcCCC
Q psy1308 105 FIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP------NLG--DLFNTVHRTAAEKKMNPFEVLLKREDE 176 (607)
Q Consensus 105 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~------~~~--d~~~~l~~A~~~~~~~~~~~Ll~~g~~ 176 (607)
|+++| ++++.+|..|+||||+|+..|+.+++++|+++|+++ +.. +++||||+|+..|+.+++++|+++|++
T Consensus 64 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 142 (236)
T 1ikn_D 64 LLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142 (236)
T ss_dssp CCSCC-CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99998 999999999999999999999999999999999864 333 357899999999999999999999999
Q ss_pred ccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 177 FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 177 ~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
++..+.. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|++..
T Consensus 143 ~~~~~~~----~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 143 VNAQEPC----NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp TTCCCTT----TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred CCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 9887541 39999999999999999999999999999999999999999999999999999999999765
No 25
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-33 Score=278.82 Aligned_cols=230 Identities=23% Similarity=0.255 Sum_probs=203.1
Q ss_pred CCchHHHHHHhcCChhHHHHHhcCCCccccc-ccccCChHHHHHHcc----------CccchhccCCCCCHHHHHHHHcC
Q psy1308 29 FQSSKLFYTTQSTQADFKSCLSVFPKIRQSN-NTCMYNNLLFASACS----------LALTLLECQSIKDLTLFRAARYG 97 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~-~~~~~~~l~~a~~~~----------~~~~~~~~~~~g~t~Lh~A~~~g 97 (607)
.|+||||+|++.|+.+++++|++.+...... +..+.++++.|+..+ .+...+..+..|.||||+|+..|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 5789999999999999999999998777665 667789999986544 33445677889999999999999
Q ss_pred CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC------------CCCchHHHHHHcCCcc
Q psy1308 98 SAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG------------DLFNTVHRTAAEKKMN 165 (607)
Q Consensus 98 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~------------d~~~~l~~A~~~~~~~ 165 (607)
+.+++++|++++ ++++.+|..|+||||+|+..|+.+++++|+++|++++.. ++.||||+|+..|+.+
T Consensus 84 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 162 (285)
T 1wdy_A 84 SVKLLKLFLSKG-ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162 (285)
T ss_dssp CHHHHHHHHHTT-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred CHHHHHHHHHcC-CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence 999999999998 999999999999999999999999999999999999865 2467999999999999
Q ss_pred HHHHHHhc-CCCccccCCCCcCcCCcchhhHHHhcCC----HHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHH
Q psy1308 166 PFEVLLKR-EDEFNDVLNPNMTFLGFSALHYGVVAGN----TEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQK 240 (607)
Q Consensus 166 ~~~~Ll~~-g~~~~~~~~~~~d~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ 240 (607)
++++|+++ |++++..+. .|+||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..++.+++++
T Consensus 163 ~v~~Ll~~~~~~~~~~~~-----~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 237 (285)
T 1wdy_A 163 VLKILLDEMGADVNACDN-----MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 237 (285)
T ss_dssp HHHHHHHTSCCCTTCCCT-----TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCCCCccCC-----CCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 99999987 998887644 49999999999999 999999999999999999999999999999999999999
Q ss_pred HHH-hhhhHHhhHHHhhcccccHHHHHH
Q psy1308 241 YAE-KYADLQREKEAEERRKYPLEQRLK 267 (607)
Q Consensus 241 ll~-~~~~~~~~~~~~~~~~~~L~~~l~ 267 (607)
|++ .+++.. ..+..+.++|+.+..
T Consensus 238 Ll~~~g~~~~---~~~~~g~t~l~~A~~ 262 (285)
T 1wdy_A 238 LLEQEHIEIN---DTDSDGKTALLLAVE 262 (285)
T ss_dssp HHHSSSCCTT---CCCTTSCCHHHHHHH
T ss_pred HHhccCCCcc---ccCCCCCcHHHHHHH
Confidence 999 777765 346678899965544
No 26
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=276.00 Aligned_cols=225 Identities=17% Similarity=0.091 Sum_probs=190.3
Q ss_pred hhhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccC
Q psy1308 4 ILVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQ 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ 83 (607)
+.....+.+..+++.. ...+..+..|.||||+||..|+.+++++|++.+... +..|
T Consensus 11 ~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~ 66 (261)
T 2xai_A 11 AIHGHQLSLRNLISQG-WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-----------------------NGVT 66 (261)
T ss_dssp HHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------------TCCC
T ss_pred HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----------------------CCCC
Confidence 4445566777777653 446677889999999999999999999999876443 3567
Q ss_pred CCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHc
Q psy1308 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAE 161 (607)
Q Consensus 84 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~ 161 (607)
..|.||||+|+..|+.+++++|++++ ++++. +..|.||||+|+..|+.+++++|+++|++++..|. +||||+|+..
T Consensus 67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 144 (261)
T 2xai_A 67 ADWHTPLFNACVSGSWDCVNLLLQHG-ASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144 (261)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHh
Confidence 88999999999999999999999999 89886 44699999999999999999999999999998765 5799999999
Q ss_pred CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHH
Q psy1308 162 KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241 (607)
Q Consensus 162 ~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~l 241 (607)
|+.+++++|+++|++++. |..|+||||+|+..|+.+++++|+++|+|++.+|..|+||+|+|+.++ ++++.|
T Consensus 145 ~~~~~v~~Ll~~g~~~~~------~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~l 216 (261)
T 2xai_A 145 QQRACVKKLLESGADVNQ------GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLF 216 (261)
T ss_dssp TCHHHHHHHHHHTCCTTC------CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHH
T ss_pred CCHHHHHHHHHcCCCCCC------CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHH
Confidence 999999999999999884 345999999999999999999999999999999999999999999655 478888
Q ss_pred HHhhhhHH-----hhHHHhhcccccH
Q psy1308 242 AEKYADLQ-----REKEAEERRKYPL 262 (607)
Q Consensus 242 l~~~~~~~-----~~~~~~~~~~~~L 262 (607)
++.+.... ....++..+.+++
T Consensus 217 l~~~~~~~l~~~~~~~~r~~~g~t~l 242 (261)
T 2xai_A 217 LEREGPPSLMQLCRLRIRKCFGIQQH 242 (261)
T ss_dssp HHC-CCCCHHHHHHHHHHTTSCTTCG
T ss_pred HhccCCccHHHHHHHHHHHHhchhcc
Confidence 88765322 1223455566666
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.3e-33 Score=266.97 Aligned_cols=210 Identities=20% Similarity=0.168 Sum_probs=185.1
Q ss_pred hhhhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhc-
Q psy1308 3 RILVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLE- 81 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~- 81 (607)
.+.....+.+..+++......+..+..|.||||+|+..|+.+++++|+..+..... ..
T Consensus 9 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~---------------------~~~ 67 (228)
T 2dzn_A 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL---------------------DDY 67 (228)
T ss_dssp HHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG---------------------GGC
T ss_pred HHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc---------------------ccc
Confidence 34455667778888877776666888999999999999999999999988743321 23
Q ss_pred cCCCCCHHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHH
Q psy1308 82 CQSIKDLTLFRAARYGSAKELKTFIENS-KLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRT 158 (607)
Q Consensus 82 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A 158 (607)
.+..|.||||+|+..|+.+++++|++++ +++++.++..|.||||+|+..|+.+++++|+++|++++.+|. +||||+|
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 147 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147 (228)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHH
Confidence 6789999999999999999999999986 478999999999999999999999999999999999998765 6799999
Q ss_pred HHcCCccHHHHHHhcC-CCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHH-hcCCCCCccCCCCCCCCcchhhhhHHH
Q psy1308 159 AAEKKMNPFEVLLKRE-DEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL-KSGADPTVKDNSGHIPSDYAEDANIKQ 236 (607)
Q Consensus 159 ~~~~~~~~~~~Ll~~g-~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~g~Tpl~~A~~~~~~~ 236 (607)
+..|+.+++++|+++| ++++..+. .|+||||+|+..|+.+++++|+ ++|+|++.+|..|+||+|+|+..+..+
T Consensus 148 ~~~~~~~~v~~Ll~~g~~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~~~ 222 (228)
T 2dzn_A 148 ASVGSLKLIELLCGLGKSAVNWQDK-----QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222 (228)
T ss_dssp HHTTCHHHHHHHHTTTCCCSCCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTHHH
T ss_pred HHcCCHHHHHHHHhcCcccccCcCC-----CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999 88887644 4999999999999999999999 899999999999999999999876555
Q ss_pred HH
Q psy1308 237 IL 238 (607)
Q Consensus 237 ~~ 238 (607)
++
T Consensus 223 ~l 224 (228)
T 2dzn_A 223 FF 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 28
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=282.20 Aligned_cols=215 Identities=16% Similarity=0.103 Sum_probs=84.6
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCCc-----------ccccccccCChHHHHHHcc----------CccchhccCCC
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPKI-----------RQSNNTCMYNNLLFASACS----------LALTLLECQSI 85 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~~-----------~~~~~~~~~~~l~~a~~~~----------~~~~~~~~~~~ 85 (607)
..+|.|+||+|+..|+.+.+..++..... ....+..+.++++.|+..+ .+..++..|..
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 45789999999999997766665433211 1122334444444443222 11222334444
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCchHHHHHHcCCc
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD-LFNTVHRTAAEKKM 164 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~~~l~~A~~~~~~ 164 (607)
|.||||+||..|+.++|++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++..+ ++||||+|+..|+.
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~ 170 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHV 170 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCH
T ss_pred CCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 444444444444444444444444 4444444444444444444444444444444444444322 23444444444444
Q ss_pred cHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHh
Q psy1308 165 NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEK 244 (607)
Q Consensus 165 ~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~ 244 (607)
+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++. |..|+||||+|+..++.+++++|++.
T Consensus 171 ~~v~~Ll~~g~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 171 ECVNSLIAYGGNIDHKIS-----HLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp HHHHHHHHTTCCTTCCBT-----TTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 444444444444443322 244444444444444444444444444442 44444444444444444444444444
Q ss_pred hhhH
Q psy1308 245 YADL 248 (607)
Q Consensus 245 ~~~~ 248 (607)
|++.
T Consensus 245 gad~ 248 (285)
T 3d9h_A 245 GADT 248 (285)
T ss_dssp TCCT
T ss_pred CCCC
Confidence 4443
No 29
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.6e-34 Score=282.03 Aligned_cols=197 Identities=19% Similarity=0.227 Sum_probs=172.7
Q ss_pred CCchHHHHHHhcCChh----HHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHc---CCHHH
Q psy1308 29 FQSSKLFYTTQSTQAD----FKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARY---GSAKE 101 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~----~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~ 101 (607)
||+||||+||..|+.+ ++++|+..+...... ....|..|.||||+||.. |+.++
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~-------------------~~~~d~~g~t~L~~A~~~~~~g~~~~ 61 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS-------------------AYTEGSTGKTCLMKAVLNLQDGVNAC 61 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG-------------------GGSBTTTTBCHHHHHHHTCBTTBCTT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccc-------------------cccCCCCCCCHHHHHHHccccchHHH
Confidence 6899999999999998 455555444332210 012688999999999999 99999
Q ss_pred HHHHHhcCCCCCcc-----------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---------------CCchH
Q psy1308 102 LKTFIENSKLDVNM-----------RHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD---------------LFNTV 155 (607)
Q Consensus 102 v~~Ll~~~~~~~~~-----------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d---------------~~~~l 155 (607)
|++|++.+ ++++. +|..|+||||+|+..|+.+++++|+++|++++..+ ++|||
T Consensus 62 v~~Ll~~g-~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL 140 (256)
T 2etb_A 62 IMPLLQID-KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140 (256)
T ss_dssp HHHHHHHH-HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHH
T ss_pred HHHHHhcC-CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHH
Confidence 99999998 66653 34789999999999999999999999999999976 67899
Q ss_pred HHHHHcCCccHHHHHHh---cCCCccccCCCCcCcCCcchhhHHHh--cCCHH-------HHHHHHhcCCCC-------C
Q psy1308 156 HRTAAEKKMNPFEVLLK---REDEFNDVLNPNMTFLGFSALHYGVV--AGNTE-------VVELLLKSGADP-------T 216 (607)
Q Consensus 156 ~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~~~d~~g~TpLh~A~~--~g~~~-------~v~~Ll~~gad~-------~ 216 (607)
|+|+..|+.+++++|++ +|++++..+. .|+||||+|+. .++.+ ++++|+++|+++ +
T Consensus 141 ~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~-----~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 215 (256)
T 2etb_A 141 SLAACTKQWDVVTYLLENPHQPASLEATDS-----LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215 (256)
T ss_dssp HHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-----TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred HHHHHcCCHHHHHHHHhccccCCCcCccCC-----CCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999 9999988754 49999999999 88888 999999999999 9
Q ss_pred ccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHh
Q psy1308 217 VKDNSGHIPSDYAEDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 217 ~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~ 250 (607)
.+|..|+||||+|+..|+.+++++|++++++...
T Consensus 216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 216 ISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999987653
No 30
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.3e-33 Score=257.30 Aligned_cols=156 Identities=31% Similarity=0.441 Sum_probs=145.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCcc
Q psy1308 88 LTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMN 165 (607)
Q Consensus 88 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~ 165 (607)
++|+.||+.|+.++|++||++| +|+|.+|..|+||||+|+..++.+++++|+++|++++.+|. +||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G-advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 5799999999999999999999 99999999999999999999999999999999999999765 67999999999999
Q ss_pred HHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 166 PFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 166 ~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
++++|+++|++++..+. .|+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus 85 ~v~~Ll~~gadvn~~d~-----~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 85 VVKLLISKGADVNAKDS-----DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp HHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHCcCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 99999999999988754 4999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHH
Q psy1308 246 ADLQ 249 (607)
Q Consensus 246 ~~~~ 249 (607)
++++
T Consensus 160 A~ie 163 (169)
T 4gpm_A 160 GWLE 163 (169)
T ss_dssp ----
T ss_pred CCcC
Confidence 9875
No 31
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=8e-33 Score=261.67 Aligned_cols=191 Identities=20% Similarity=0.297 Sum_probs=174.1
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFI 106 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll 106 (607)
+.++.||||+|+..|+.+.++.|+..+.. .++..+..|.||||+|+..|+.+++++|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 59 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTY----------------------QVDEVDTEGNTPLNIAVHNNDIEIAKALI 59 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTC----------------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCC----------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 35789999999999999999999876532 12466789999999999999999999999
Q ss_pred hcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcC-CCccccCC
Q psy1308 107 ENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL-EAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKRE-DEFNDVLN 182 (607)
Q Consensus 107 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~ 182 (607)
++| ++++.+|..|+||||+|+..|+.+++++|+ ..+++++..+. .||||+|+..|+.+++++|+++| ++++..+.
T Consensus 60 ~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 138 (201)
T 3hra_A 60 DRG-ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138 (201)
T ss_dssp HTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT
T ss_pred HcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Confidence 998 999999999999999999999999999999 66778888765 67999999999999999999999 88887644
Q ss_pred CCcCcCCcchhhHHHhcCC-----HHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 183 PNMTFLGFSALHYGVVAGN-----TEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 183 ~~~d~~g~TpLh~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
.|+||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|
T Consensus 139 -----~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 139 -----FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp -----TSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred -----CCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 49999999999998 99999999999999999999999999999999999999999764
No 32
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-33 Score=294.39 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=198.4
Q ss_pred CCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHcc------------------CccchhccCC
Q psy1308 23 KPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACS------------------LALTLLECQS 84 (607)
Q Consensus 23 ~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~------------------~~~~~~~~~~ 84 (607)
+..++..|.||||+|+..+ .+++++|+........ ...+.+++|+|+..+ .+..++..|.
T Consensus 87 ~~~~~~~g~t~L~~Aa~~~-~~~~~~L~~~~~n~~d-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~ 164 (373)
T 2fo1_E 87 PTEPEPESPIKLHTEAAGS-YAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 164 (373)
T ss_dssp -------CCCHHHHHHHSS-SCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred ccCCCCCCccHHHHHhcCC-chHHHHhccccccccC-CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 3456777888888888744 4677777765532221 245677777775433 3345567889
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCC--CchHHHHH
Q psy1308 85 IKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG---ANPNLGDL--FNTVHRTA 159 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g---a~~~~~d~--~~~l~~A~ 159 (607)
.|.||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+.+++++|+++| ++++..|. +||||+|+
T Consensus 165 ~g~TpL~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 165 DENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243 (373)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcChHHHHHHHHHCC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence 9999999999999999999999998 999999999999999999999999999999987 78887654 67999999
Q ss_pred HcC---CccHHHHHHhcCCCccccCC---CCcCcCCcchhhHHHhcCCHHHHHHHHhcC-CCCCccCCCCCCCCcchhhh
Q psy1308 160 AEK---KMNPFEVLLKREDEFNDVLN---PNMTFLGFSALHYGVVAGNTEVVELLLKSG-ADPTVKDNSGHIPSDYAEDA 232 (607)
Q Consensus 160 ~~~---~~~~~~~Ll~~g~~~~~~~~---~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~Tpl~~A~~~ 232 (607)
..+ +.+++++|+++|++++.... +..|..|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..
T Consensus 244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~ 323 (373)
T 2fo1_E 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 323 (373)
T ss_dssp HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc
Confidence 988 78999999999999886321 223556999999999999999999999876 99999999999999999999
Q ss_pred hHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHH
Q psy1308 233 NIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISA 282 (607)
Q Consensus 233 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~ 282 (607)
|+.+++++|++.|++... .+..+.++|..+... |..+.++.+..
T Consensus 324 g~~~iv~~Ll~~gad~~~---~d~~g~t~l~~A~~~---g~~~iv~~Ll~ 367 (373)
T 2fo1_E 324 GRIEVVMYLIQQGASVEA---VDATDHTARQLAQAN---NHHNIVDIFDR 367 (373)
T ss_dssp TCHHHHHHHHHTTCCSSC---CCSSSCCHHHHHHHT---TCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCccC---CCCCCCCHHHHHHHc---CCHHHHHHHHh
Confidence 999999999999988763 467788899777654 56667766643
No 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=6.5e-33 Score=276.65 Aligned_cols=203 Identities=18% Similarity=0.163 Sum_probs=164.9
Q ss_pred hhhhchhhhHHHHHhhccc--CCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchh
Q psy1308 3 RILVQRRQLVLCILSNYFK--QKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLL 80 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 80 (607)
.+.....+++..+++.... ..+..+..|.||||+||..|+.+++++|++.+....
T Consensus 16 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------------------- 72 (282)
T 1oy3_D 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL----------------------- 72 (282)
T ss_dssp HHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-----------------------
T ss_pred HHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------
Confidence 3444555667777655443 245677889999999999999999999998865433
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCC----------------------------------------------CCCc
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSK----------------------------------------------LDVN 114 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----------------------------------------------~~~~ 114 (607)
..+..|.||||+|+..|+.+++++|++++. .+++
T Consensus 73 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (282)
T 1oy3_D 73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152 (282)
T ss_dssp CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTT
T ss_pred CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCC
Confidence 567789999999999999999999999762 2377
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---CCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcc
Q psy1308 115 MRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD---LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFS 191 (607)
Q Consensus 115 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d---~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~T 191 (607)
.+|..|+||||+|+..|+.+++++|+++|++++..+ ++||||+|+..|+.+++++|+++|++++..+.. |+|
T Consensus 153 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~-----g~t 227 (282)
T 1oy3_D 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG-----GRT 227 (282)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----SCC
T ss_pred CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccC-----CCC
Confidence 889999999999999999999999999999999976 678999999999999999999999999887544 999
Q ss_pred hhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh
Q psy1308 192 ALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233 (607)
Q Consensus 192 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~ 233 (607)
|||+|+..|+.+++++|+++|++++.+|..|+||+++|....
T Consensus 228 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 228 PLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred HHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 999999999999999999999999999999999999998765
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=264.53 Aligned_cols=220 Identities=19% Similarity=0.165 Sum_probs=187.3
Q ss_pred CCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCcc----------chh-ccCCCCCHHHHHH
Q psy1308 25 YKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLAL----------TLL-ECQSIKDLTLFRA 93 (607)
Q Consensus 25 ~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~----------~~~-~~~~~g~t~Lh~A 93 (607)
..+.+|.||||+|++.|+.+++++|++.+......+..+.++++.|...+... ... ..+..|.||||+|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 45667888888888888888888888887777777777788888876554332 222 2345589999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCC-ccHHHHH
Q psy1308 94 ARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKK-MNPFEVL 170 (607)
Q Consensus 94 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~-~~~~~~L 170 (607)
+..|+.+++++|++.+ ++++.++..|.||||+|+..|+.+++++|+++|++++..+. .||||+|+..++ .+++++|
T Consensus 84 ~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L 162 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162 (240)
T ss_dssp HHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred HHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999999998765 579999997766 8999999
Q ss_pred HhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 171 LKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 171 l~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
++.|++++..+.. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.++...
T Consensus 163 ~~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 163 LTFNVSVNLGDKY----HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHTTCCTTCCCTT----TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HhcCCCcchhhcc----CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 9999999877541 39999999999999999999999999999999999999999999999999999999887653
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-32 Score=274.02 Aligned_cols=235 Identities=17% Similarity=0.162 Sum_probs=153.6
Q ss_pred hhhhhchhhhHHHHHhhccc--------CCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHc
Q psy1308 2 FRILVQRRQLVLCILSNYFK--------QKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASAC 73 (607)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~ 73 (607)
..+-..|.+.+..++..... .....+..|.||||+||..|+.+++++|+..+....
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~---------------- 67 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN---------------- 67 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT----------------
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc----------------
Confidence 34445566555555544322 122234568899999999999999999998765444
Q ss_pred cCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--
Q psy1308 74 SLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL-- 151 (607)
Q Consensus 74 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-- 151 (607)
..+..|.||||+||..|+.++|++|+++| +++|.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 68 -------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 139 (299)
T 1s70_B 68 -------YANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139 (299)
T ss_dssp -------CBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred -------ccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence 45566777777777777777777777776 77777777777777777777777777777777777776553
Q ss_pred CchHHHHHHcCCccHHHHHHh-cCCCcccc---------------------CCCCcCcCCcchhhHHHhcCCHHHHHHHH
Q psy1308 152 FNTVHRTAAEKKMNPFEVLLK-REDEFNDV---------------------LNPNMTFLGFSALHYGVVAGNTEVVELLL 209 (607)
Q Consensus 152 ~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~---------------------~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll 209 (607)
.||||+|+..++.++++.++. .+.+++.. .....+..|.||||+|+..|+.+++++|+
T Consensus 140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 219 (299)
T 1s70_B 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219 (299)
T ss_dssp CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence 457777766666666665543 23332210 01112334667777777777777777777
Q ss_pred hcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHH
Q psy1308 210 KSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLE 263 (607)
Q Consensus 210 ~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~ 263 (607)
++|++++.+|..|+||||+|+..|+.+++++|++.|++... .+..+.+|+.
T Consensus 220 ~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~---~d~~g~t~l~ 270 (299)
T 1s70_B 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA---VNKVGQTAFD 270 (299)
T ss_dssp TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCTTT
T ss_pred HcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC---cCCCCCCHHH
Confidence 77777777777777777777777777777777777666542 2445555554
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.5e-32 Score=274.88 Aligned_cols=222 Identities=14% Similarity=0.126 Sum_probs=188.3
Q ss_pred CCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHH
Q psy1308 22 QKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKE 101 (607)
Q Consensus 22 ~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~ 101 (607)
..+..+..|.||||+||..|+.+++++|+..+.... .. +|.||||+|+..|+.++
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------------------~~--~g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-----------------------LL--ENEFPLHQAATLEDTKI 77 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-----------------------CC--TTCCHHHHHTTSSSCHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-----------------------CC--CCCCHHHHHHHcCCHHH
Confidence 467788999999999999999999999998865433 22 48999999999999999
Q ss_pred HHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CchHHHHHHcCCccHHHHHHhcCCCcc
Q psy1308 102 LKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL---FNTVHRTAAEKKMNPFEVLLKREDEFN 178 (607)
Q Consensus 102 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~---~~~l~~A~~~~~~~~~~~Ll~~g~~~~ 178 (607)
+++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++++..+. .||||+|+..|+.+++++|+++|++..
T Consensus 78 v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 156 (285)
T 3kea_A 78 VKILLFSG-LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156 (285)
T ss_dssp HHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC
T ss_pred HHHHHHCC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Confidence 99999998 99999999999999999999999999999999999998765 479999999999999999999998763
Q ss_pred ccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCC-CcchhhhhHHHHHHHHHHhhhhHHhhHHHhhc
Q psy1308 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP-SDYAEDANIKQILQKYAEKYADLQREKEAEER 257 (607)
Q Consensus 179 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp-l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 257 (607)
.. ..|+||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..++.+++++|++.|++....+.
T Consensus 157 ~~------~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~---- 226 (285)
T 3kea_A 157 DL------AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL---- 226 (285)
T ss_dssp CC------STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG----
T ss_pred cc------cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh----
Confidence 22 149999999999999999999999999999999999998 9999999999999999999998775431
Q ss_pred ccccHHHHHHhHhhhhHHHHHHHHHHHHHhh
Q psy1308 258 RKYPLEQRLKDRIVGQESAINIISAAIKRKE 288 (607)
Q Consensus 258 ~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~ 288 (607)
.. ...|..+.++.+.+.-....
T Consensus 227 ~a---------~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 227 EN---------VLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp GG---------GTTTCHHHHHHHHHHHHHHT
T ss_pred hh---------hhcCCHHHHHHHHHcCCCCC
Confidence 11 12456666776666554443
No 37
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.98 E-value=3.9e-32 Score=281.91 Aligned_cols=237 Identities=11% Similarity=-0.005 Sum_probs=202.8
Q ss_pred hhhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccc-----
Q psy1308 4 ILVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALT----- 78 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~----- 78 (607)
+.....+++..++.. ....+..+..|.||||+||..|+.+++++|+..+.... ...+.++++.|...++...
T Consensus 28 a~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll 104 (364)
T 3ljn_A 28 ARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALV 104 (364)
T ss_dssp HHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC--CBTTBCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCHHHHHHHcCCHHHHHHHH
Confidence 344555666677655 45567788899999999999999999999999887443 3467899999876554321
Q ss_pred ---------hhc-----------------cCCCCCHHHHHHHHcC--CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHc
Q psy1308 79 ---------LLE-----------------CQSIKDLTLFRAARYG--SAKELKTFIENSKLDVNMRHPLGWTPLHVAAIN 130 (607)
Q Consensus 79 ---------~~~-----------------~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 130 (607)
.+. .+..|.||||+|+..| +.++|++|++.| ++++.+|..|+||||+|+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~ 183 (364)
T 3ljn_A 105 EGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADETPLMRAMEF 183 (364)
T ss_dssp HHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHT
T ss_pred HhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHc
Confidence 122 7788999999999999 999999999998 99999999999999999999
Q ss_pred CCHHHHHHHHHcCCC-----CCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHH
Q psy1308 131 GKVDNVRVLLEAGAN-----PNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTE 203 (607)
Q Consensus 131 g~~~~v~~Ll~~ga~-----~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 203 (607)
|+.++|++|+++|++ ++..|. +||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+
T Consensus 184 g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~-----g~tpL~~A~~~g~~~ 258 (364)
T 3ljn_A 184 RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNE-----HTVPLYLSVRAAMVL 258 (364)
T ss_dssp TCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTT-----SCCHHHHHHHTCCHH
T ss_pred CCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-----CCCHHHHHHHhChHH
Confidence 999999999999999 888664 67999999999999999999999999877544 999999999999999
Q ss_pred HHHHHHhcCCCCCc------------cCCCCCCCCcchhhhhHHHHHHHHHHhhhhHH
Q psy1308 204 VVELLLKSGADPTV------------KDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249 (607)
Q Consensus 204 ~v~~Ll~~gad~~~------------~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~ 249 (607)
++++|+++|++++. .+..++||+++|+..++.+.+..|+..+.+..
T Consensus 259 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 259 LTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316 (364)
T ss_dssp HHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence 99999999877533 56678999999999999888888888876654
No 38
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=3.3e-33 Score=277.96 Aligned_cols=204 Identities=17% Similarity=0.185 Sum_probs=171.3
Q ss_pred CCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHc---CCH
Q psy1308 23 KPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARY---GSA 99 (607)
Q Consensus 23 ~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~ 99 (607)
.+..+.+|+||||+||..|+.++++.|+..+...... ........+..|+||||+||.. |+.
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---------------~~~~~~~~~~~g~tpL~~A~~~~~~g~~ 70 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR---------------LTDSEFKDPETGKTCLLKAMLNLHNGQN 70 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC---------------TTSGGGSCTTTCCCHHHHHHHSCBTTBC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccc---------------cCCcccccCcCCCCHHHHHHHHHhcCCh
Confidence 3456788999999999999999999887632111100 0000013578999999999987 999
Q ss_pred HHHHHHHhcCCCC-------Cc----cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------CC
Q psy1308 100 KELKTFIENSKLD-------VN----MRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD----------------LF 152 (607)
Q Consensus 100 ~~v~~Ll~~~~~~-------~~----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d----------------~~ 152 (607)
++|++|++.+ ++ +| .+|..|+||||+|+..|+.++|++|+++|++++..+ ++
T Consensus 71 ~~v~~Ll~~g-a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~ 149 (273)
T 2pnn_A 71 DTIALLLDVA-RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149 (273)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCB
T ss_pred HHHHHHHHhh-ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCC
Confidence 9999999987 44 22 367789999999999999999999999999999876 56
Q ss_pred chHHHHHHcCCccHHHHHHh---cCCCccccCCCCcCcCCcchhhHHHhcCC---------HHHHHHHHhcCCCCC----
Q psy1308 153 NTVHRTAAEKKMNPFEVLLK---REDEFNDVLNPNMTFLGFSALHYGVVAGN---------TEVVELLLKSGADPT---- 216 (607)
Q Consensus 153 ~~l~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~~~d~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~~---- 216 (607)
||||+|+..|+.+++++|++ +|++++..+.. |+||||+|+..|+ .+++++|+++|++++
T Consensus 150 tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~-----g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~ 224 (273)
T 2pnn_A 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSV-----GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224 (273)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT-----SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCC-----CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccc
Confidence 79999999999999999999 99999877544 9999999999998 899999999999997
Q ss_pred ---ccCCCCCCCCcchhhhhHHHHHHHHHHhhhh
Q psy1308 217 ---VKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247 (607)
Q Consensus 217 ---~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~ 247 (607)
.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus 225 ~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred cccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence 4899999999999999999999999999994
No 39
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=5.2e-33 Score=274.34 Aligned_cols=200 Identities=19% Similarity=0.139 Sum_probs=172.4
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhc----CCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHH---HcCCH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSV----FPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAA---RYGSA 99 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~---~~g~~ 99 (607)
+.+|+||||.||..|+.+.++.|+. .+......+ ...+..|.||||+|+ ..|+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~-------------------~~~~~~g~t~L~~A~~~~~~g~~ 62 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE-------------------FREPSTGKTCLPKALLNLSAGRN 62 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG-------------------GSCTTTCCCHHHHHHTSCBTTBC
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh-------------------hhccCCCCcHHHHHHHHhhcCCH
Confidence 4689999999999999996555544 443332210 134578999999999 67999
Q ss_pred HHHHHHHhcCC----------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------CCc
Q psy1308 100 KELKTFIENSK----------LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD----------------LFN 153 (607)
Q Consensus 100 ~~v~~Ll~~~~----------~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d----------------~~~ 153 (607)
++|++|++.+. .+++..|..|+||||+||..|+.++|++|+++|++++..+ ++|
T Consensus 63 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~t 142 (260)
T 3jxi_A 63 DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142 (260)
T ss_dssp THHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSS
T ss_pred HHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCC
Confidence 99999999861 3345566689999999999999999999999999999987 678
Q ss_pred hHHHHHHcCCccHHHHHHh---cCCCccccCCCCcCcCCcchhhHHHhcCC---------HHHHHHHHhcCCCC------
Q psy1308 154 TVHRTAAEKKMNPFEVLLK---REDEFNDVLNPNMTFLGFSALHYGVVAGN---------TEVVELLLKSGADP------ 215 (607)
Q Consensus 154 ~l~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~~~d~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~------ 215 (607)
|||+|+..|+.+++++|++ +|++++..+. .|+||||+|+..|+ .+++++|+++|+++
T Consensus 143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~-----~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~ 217 (260)
T 3jxi_A 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDS-----RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT-----TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred HHHHHHHcCCHHHHHHHHhccccCCCCcccCC-----CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence 9999999999999999999 9999987754 49999999999887 79999999999998
Q ss_pred -CccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHh
Q psy1308 216 -TVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 216 -~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~ 250 (607)
+.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus 218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred hhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 67999999999999999999999999999988654
No 40
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.98 E-value=8.9e-33 Score=287.64 Aligned_cols=220 Identities=17% Similarity=0.165 Sum_probs=194.0
Q ss_pred CCCC-cCCchHHHHHHhcCChhHHHHHh--------cCCCcccccccccCChHHHHHHcc----------CccchhccCC
Q psy1308 24 PYKR-GFQSSKLFYTTQSTQADFKSCLS--------VFPKIRQSNNTCMYNNLLFASACS----------LALTLLECQS 84 (607)
Q Consensus 24 ~~~~-~~g~t~L~~A~~~g~~~~v~~L~--------~~~~~~~~~~~~~~~~l~~a~~~~----------~~~~~~~~~~ 84 (607)
+..+ ..|+||||+||..|+.+++++|+ ..+...+..+..+.+++++|+..+ .+..++..+.
T Consensus 118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~ 197 (373)
T 2fo1_E 118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK 197 (373)
T ss_dssp TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCC
Confidence 4445 68999999999999999888876 788888888889999999996444 3445567889
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhcCC--CCCccCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCC----------
Q psy1308 85 IKDLTLFRAARYGSAKELKTFIENSK--LDVNMRHPLGWTPLHVAAING---KVDNVRVLLEAGANPNLG---------- 149 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~ga~~~~~---------- 149 (607)
.|.||||+|+..|+.+++++|++++. ++++.+|..|+||||+|+..+ +.+++++|+++|++++..
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~ 277 (373)
T 2fo1_E 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 277 (373)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccc
Confidence 99999999999999999999999763 689999999999999999998 899999999999999862
Q ss_pred CCCchHHHHHHcCCccHHHHHHhcC-CCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcc
Q psy1308 150 DLFNTVHRTAAEKKMNPFEVLLKRE-DEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDY 228 (607)
Q Consensus 150 d~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~ 228 (607)
+++||||+|+..|+.+++++|++++ ++++..+. .|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus 278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~-----~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~ 352 (373)
T 2fo1_E 278 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-----DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352 (373)
T ss_dssp CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT-----TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHH
Confidence 4578999999999999999999886 88887644 49999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhhH
Q psy1308 229 AEDANIKQILQKYAEKYADL 248 (607)
Q Consensus 229 A~~~~~~~~~~~ll~~~~~~ 248 (607)
|+..|+.+++++|++.+++.
T Consensus 353 A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 353 AQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HHHTTCHHHHHHHHTTC---
T ss_pred HHHcCCHHHHHHHHhcCccc
Confidence 99999999999999988763
No 41
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.98 E-value=7.2e-32 Score=277.73 Aligned_cols=216 Identities=21% Similarity=0.267 Sum_probs=190.9
Q ss_pred CCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHH
Q psy1308 26 KRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTF 105 (607)
Q Consensus 26 ~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L 105 (607)
.+.+|.|+||.||..|+.+.++.|+.... ..++..|..|.||||+||..|+.++|++|
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~----------------------~~~~~~d~~g~t~L~~A~~~g~~~~v~~L 77 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLN----------------------VNCHASDGRKSTPLHLAAGYNRVRIVQLL 77 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTT----------------------TTCCCSSTTCCCHHHHHHHTTCHHHHHHH
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcC----------------------CCcccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 45678899999999999999999976421 12246788999999999999999999999
Q ss_pred HhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCC
Q psy1308 106 IENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNP 183 (607)
Q Consensus 106 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 183 (607)
+++| ++++.+|..|+||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+++++|+++|++++..+..
T Consensus 78 l~~g-~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 156 (351)
T 3utm_A 78 LQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156 (351)
T ss_dssp HHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHcC-CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence 9998 99999999999999999999999999999999999998775 67999999999999999999999998765421
Q ss_pred -------------------------------------------------CcCcCCcchhhHHHhc---CCHHHHHHHHhc
Q psy1308 184 -------------------------------------------------NMTFLGFSALHYGVVA---GNTEVVELLLKS 211 (607)
Q Consensus 184 -------------------------------------------------~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~ 211 (607)
..+..|.||||+|+.. ++.+++++|+++
T Consensus 157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~ 236 (351)
T 3utm_A 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236 (351)
T ss_dssp SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT
T ss_pred CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc
Confidence 2345689999999999 568999999999
Q ss_pred CCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHH
Q psy1308 212 GADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLK 267 (607)
Q Consensus 212 gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~ 267 (607)
|++++.+|..|+||||+|+..|+.+++++|++.|++... .+..+.++|+.+..
T Consensus 237 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~---~d~~g~t~L~~A~~ 289 (351)
T 3utm_A 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA---LDSLGQTALHRAAL 289 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHH
T ss_pred CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---cCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999998763 46788999966553
No 42
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.98 E-value=1.2e-31 Score=245.74 Aligned_cols=157 Identities=27% Similarity=0.297 Sum_probs=141.6
Q ss_pred hHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCC
Q psy1308 32 SKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKL 111 (607)
Q Consensus 32 t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 111 (607)
++|+.||+.|+.++|++|++.+..+ +..|..|+||||+|+..|+.+++++|++.+ +
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-----------------------n~~d~~g~t~l~~a~~~~~~~~~~~ll~~g-a 61 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-----------------------NASDSDGRTPLHHAAENGHKEVVKLLISKG-A 61 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-----------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcc-c
Confidence 5799999999999999999876543 367889999999999999999999999999 9
Q ss_pred CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCC
Q psy1308 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLG 189 (607)
Q Consensus 112 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g 189 (607)
+++.+|..|+||||+||..|+.++|++|+++|+++|.+|. +||||+|+..|+.+++++|+++|++++..+.. |
T Consensus 62 d~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-----G 136 (169)
T 4gpm_A 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSD-----G 136 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----S
T ss_pred chhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC-----C
Confidence 9999999999999999999999999999999999999765 67999999999999999999999999877544 9
Q ss_pred cchhhHHHhcCCHHHHHHHHhcCCCCCc
Q psy1308 190 FSALHYGVVAGNTEVVELLLKSGADPTV 217 (607)
Q Consensus 190 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 217 (607)
+||||+|+..|+.+++++|+++||+++-
T Consensus 137 ~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 137 RTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTC------
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 9999999999999999999999999864
No 43
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=1.2e-30 Score=267.70 Aligned_cols=204 Identities=18% Similarity=0.096 Sum_probs=161.2
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHH
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELK 103 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~ 103 (607)
+..+..|.||||+|+..|+.+++++|+..+......... .......+..|.||||+||..|+.++|+
T Consensus 119 ~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~-------------~~~~~~~~~~g~T~L~~A~~~g~~~~v~ 185 (337)
T 4g8k_A 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT-------------KEDQERLRKGGATALMDAAEKGHVEVLK 185 (337)
T ss_dssp TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC-------------C-----CTTCSCCHHHHHHHHTCHHHHH
T ss_pred hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc-------------ccccccccCCCCcHHHHHHHCCCHHHHH
Confidence 334455555555555555555555555554433322110 1112345678999999999999999999
Q ss_pred HHHhcCCCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhc-CCC
Q psy1308 104 TFIENSKLDVNMRHPLGWTPLHVAAINGK----VDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKR-EDE 176 (607)
Q Consensus 104 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~-g~~ 176 (607)
+||++.++++|.+|..|.||||+++..++ ..++++|+++|+++|.+|. +||||+|+..|+.+++++|++. |++
T Consensus 186 ~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~ 265 (337)
T 4g8k_A 186 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 265 (337)
T ss_dssp HHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC
T ss_pred HHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc
Confidence 99986559999999999999999887554 4688999999999999875 6799999999999999999985 788
Q ss_pred ccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHh
Q psy1308 177 FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 177 ~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~ 250 (607)
++..+. .|+||||+|+..|+.++|++|+++|||+|.+ ||||+|+.+++.+++++|+++|++...
T Consensus 266 vn~~d~-----~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 266 INDTDS-----DGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp TTCBCT-----TSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred ccCcCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 887754 4999999999999999999999999999754 599999999999999999999998764
No 44
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=4.2e-31 Score=254.13 Aligned_cols=177 Identities=23% Similarity=0.310 Sum_probs=162.6
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCC--CCchHHH
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA-NPNLGD--LFNTVHR 157 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-~~~~~d--~~~~l~~ 157 (607)
..|..|.||||+||..|+.+++++|++++ ++++.+|..|+||||+|+..|+.+++++|+++++ +++..+ ++||||+
T Consensus 20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 98 (223)
T 2f8y_A 20 QTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 98 (223)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHH
T ss_pred ccCCCCCchHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHH
Confidence 34789999999999999999999999998 9999999999999999999999999999999987 777755 4679999
Q ss_pred HHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHH
Q psy1308 158 TAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237 (607)
Q Consensus 158 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~ 237 (607)
|+..++.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++
T Consensus 99 A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 173 (223)
T 2f8y_A 99 AARLAVEGMLEDLINSHADVNAVDD-----LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYET 173 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCT-----TSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHhCcHHHHHHHHHcCCCCcCcCC-----CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHH
Confidence 9999999999999999999987754 49999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHhhHHHhhcccccHHHHH
Q psy1308 238 LQKYAEKYADLQREKEAEERRKYPLEQRL 266 (607)
Q Consensus 238 ~~~ll~~~~~~~~~~~~~~~~~~~L~~~l 266 (607)
+++|++.+++... .+..+.+++..+.
T Consensus 174 v~~Ll~~ga~~~~---~~~~g~t~l~~A~ 199 (223)
T 2f8y_A 174 AKVLLDHFANRDI---TDHMDRLPRDIAQ 199 (223)
T ss_dssp HHHHHHTTCCTTC---CCTTCCCHHHHHH
T ss_pred HHHHHHcCCCCcc---ccccCCCHHHHHH
Confidence 9999999998753 4567888885554
No 45
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=3e-30 Score=251.10 Aligned_cols=196 Identities=18% Similarity=0.157 Sum_probs=155.4
Q ss_pred cccccCChHHHHHHccC--------------ccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHH
Q psy1308 59 NNTCMYNNLLFASACSL--------------ALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPL 124 (607)
Q Consensus 59 ~~~~~~~~l~~a~~~~~--------------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 124 (607)
.+..+.++++.|+..+. +..++..+..|.||||+|+..|+.+++++|++.| ++++.+|..|+|||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAA 83 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHH
Confidence 34566777777754443 2344566778888888888888888888888888 88888888888888
Q ss_pred HHHHHcCCHHHHHHHHHcCC----CCCCCC--CCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHh
Q psy1308 125 HVAAINGKVDNVRVLLEAGA----NPNLGD--LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVV 198 (607)
Q Consensus 125 h~A~~~g~~~~v~~Ll~~ga----~~~~~d--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~ 198 (607)
|+|+..|+.+++++|+++|+ +++..+ ++||||+|+..|+.+++++|+++|++++..+. ..|.||||+|+.
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~~g~t~L~~A~~ 159 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI----KSGRSPLIHAVE 159 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TTCCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc----cCCCcHHHHHHH
Confidence 88888888888888888877 666654 35688888888888888888888888876642 238888888888
Q ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccH
Q psy1308 199 AGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPL 262 (607)
Q Consensus 199 ~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L 262 (607)
.|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|++... .+..+.+|+
T Consensus 160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~---~~~~g~tpl 220 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL---KNCHNDTPL 220 (241)
T ss_dssp TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTSCCTT
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC---cCCCCCCHH
Confidence 8888888888888888888888888888888888888888888888887653 356677787
No 46
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=2.1e-30 Score=251.74 Aligned_cols=194 Identities=16% Similarity=0.158 Sum_probs=165.6
Q ss_pred hhHHHHHhhccc---CCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCC
Q psy1308 10 QLVLCILSNYFK---QKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIK 86 (607)
Q Consensus 10 ~~~~~~~~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g 86 (607)
+.+..++..... ..+..+..|.||||+||..|+.+++++|+..+.... ..+..|
T Consensus 22 ~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------------------~~~~~g 78 (236)
T 1ikn_D 22 ALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-----------------------LRDFRG 78 (236)
T ss_dssp SSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-----------------------CCCTTC
T ss_pred hHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------CcCCCC
Confidence 333444444333 356678889999999999999999999987764433 567899
Q ss_pred CHHHHHHHHcCCHHHHHHHHhcCCCC------CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---CCchHHH
Q psy1308 87 DLTLFRAARYGSAKELKTFIENSKLD------VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD---LFNTVHR 157 (607)
Q Consensus 87 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d---~~~~l~~ 157 (607)
.||||+|+..|+.+++++|++.+ .+ ++..+..|+||||+|+..|+.+++++|+++|++++..+ ++||||+
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 157 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSC-TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHST-TTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcc-cchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence 99999999999999999999998 44 67788999999999999999999999999999999875 4679999
Q ss_pred HHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCC--ccCCCCCCCCcchhhh
Q psy1308 158 TAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPT--VKDNSGHIPSDYAEDA 232 (607)
Q Consensus 158 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~g~Tpl~~A~~~ 232 (607)
|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|+++. ..+..|.||.+.+...
T Consensus 158 A~~~~~~~~v~~Ll~~ga~~~~~~~-----~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 158 AVDLQNPDLVSLLLKCGADVNRVTY-----QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHTTCHHHHHHHHTTTCCSCCCCT-----TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHcCCHHHHHHHHHcCCCCCcccC-----CCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 9999999999999999999987754 49999999999999999999999999876 8899999999988754
No 47
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.2e-30 Score=243.24 Aligned_cols=162 Identities=22% Similarity=0.184 Sum_probs=153.3
Q ss_pred hhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHH
Q psy1308 79 LLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVH 156 (607)
Q Consensus 79 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~ 156 (607)
.+..|..|.||||+||..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++..|. +||||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 3568899999999999999999999999998 89999999999999999999999999999999999998775 67999
Q ss_pred HHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHH
Q psy1308 157 RTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236 (607)
Q Consensus 157 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~ 236 (607)
+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.+
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNL-----EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCT-----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence 99999999999999999999987754 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy1308 237 ILQKYAEKYA 246 (607)
Q Consensus 237 ~~~~ll~~~~ 246 (607)
++++|++.+.
T Consensus 182 ~v~~Ll~~~~ 191 (192)
T 2rfm_A 182 VIKIFTEVRR 191 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccC
Confidence 9999998763
No 48
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=7.3e-30 Score=247.90 Aligned_cols=228 Identities=19% Similarity=0.189 Sum_probs=190.3
Q ss_pred hhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHH
Q psy1308 79 LLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVH 156 (607)
Q Consensus 79 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~ 156 (607)
++..+..|.||||+||..|+.+++++|+++| ++++.++..|+||||+|+..|+.+++++|+++|++++..+. .||||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcC-CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 4567889999999999999999999999998 99999999999999999999999999999999999998765 67999
Q ss_pred HHHHcCCccHHHHHHhcC-CCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHH
Q psy1308 157 RTAAEKKMNPFEVLLKRE-DEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIK 235 (607)
Q Consensus 157 ~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~ 235 (607)
+|+..|+.+++++|+++| .+++..+ ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~-----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQD-----DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCC-----TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCC-----CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 999999999999999998 6776654 4499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHH
Q psy1308 236 QILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAK 315 (607)
Q Consensus 236 ~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~ 315 (607)
+++++|++.+++... .+..+.++|+.+... ++...++.+...-...........+|+.+. .-.|+...+.
T Consensus 158 ~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~---~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A----~~~~~~~~~~ 227 (237)
T 3b7b_A 158 DIAEILLAAKCDLHA---VNIHGDSPLHIAARE---NRYDCVVLFLSRDSDVTLKNKEGETPLQCA----SLNSQVWSAL 227 (237)
T ss_dssp HHHHHHHTTTCCTTC---CCTTCCCHHHHHHHT---TCHHHHHHHHTTTCCTTCCCTTSCCHHHHS----CTTCHHHHHH
T ss_pred HHHHHHHHcCCCCCC---cCCCCCCHHHHHHHh---CCHhHHHHHHHcCCCCCccCCCCCCHHHHH----HHHHHHHHHH
Confidence 999999999988763 356788999766543 455666655544333333333344455332 3457777777
Q ss_pred HHHHHhc
Q psy1308 316 QLAFYIH 322 (607)
Q Consensus 316 ~la~~l~ 322 (607)
.+.+.+.
T Consensus 228 ~l~~~l~ 234 (237)
T 3b7b_A 228 QMSKALQ 234 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7766653
No 49
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=7.6e-30 Score=233.81 Aligned_cols=159 Identities=28% Similarity=0.341 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcC
Q psy1308 85 IKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEK 162 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~ 162 (607)
.|.||||.||..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++|++++..+. +||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 5889999999999999999999998 89999999999999999999999999999999999998765 57999999999
Q ss_pred CccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHH
Q psy1308 163 KMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYA 242 (607)
Q Consensus 163 ~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll 242 (607)
+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDW-----NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCcCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 99999999999999987744 4999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHH
Q psy1308 243 EKYADLQ 249 (607)
Q Consensus 243 ~~~~~~~ 249 (607)
+++++..
T Consensus 156 ~~~~~~~ 162 (167)
T 3v31_A 156 SHLLKLL 162 (167)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9987654
No 50
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=4.7e-30 Score=248.50 Aligned_cols=194 Identities=20% Similarity=0.249 Sum_probs=165.5
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCC--CCCchHHH
Q psy1308 85 IKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP-----NLG--DLFNTVHR 157 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-----~~~--d~~~~l~~ 157 (607)
.|+||||+||..|+.+++++|++..+++++.+|..|+||||+||..|+.+++++|+++|+++ +.. +++||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 58999999999999999999999844999999999999999999999999999999999986 433 45789999
Q ss_pred HHHcCCccHHHHHHhcCCCccccCCC--------CcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcch
Q psy1308 158 TAAEKKMNPFEVLLKREDEFNDVLNP--------NMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229 (607)
Q Consensus 158 A~~~~~~~~~~~Ll~~g~~~~~~~~~--------~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A 229 (607)
|+..|+.+++++|+++|++++..+.. ..|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999876541 2345699999999999999999999999999999999999999999
Q ss_pred hhhhHHHHH----HHHHHhhhhHHhh---HHHhhcccccHHHHHHhHhhhhHHHHHHHH
Q psy1308 230 EDANIKQIL----QKYAEKYADLQRE---KEAEERRKYPLEQRLKDRIVGQESAINIIS 281 (607)
Q Consensus 230 ~~~~~~~~~----~~ll~~~~~~~~~---~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~ 281 (607)
+..++.+++ ++|++.+++.... +..+..+.+||+.+... |+.+.++.+.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~---g~~~~v~~Ll 217 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE---GNIVMFQHLM 217 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH---TCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc---CCHHHHHHHH
Confidence 999999888 9999999865311 23467889999555432 3444444443
No 51
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.96 E-value=6.9e-30 Score=257.23 Aligned_cols=189 Identities=23% Similarity=0.268 Sum_probs=163.7
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHH
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRT 158 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A 158 (607)
..+..|.||||.||..|+.++|++|+++| +++|.+|..|+||||+||..|+.++|++|+++|++++..|. +||||+|
T Consensus 35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A 113 (299)
T 1s70_B 35 KVKFDDGAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA 113 (299)
T ss_dssp CCEECHHHHHHHHHHHTCHHHHHHHHHHC-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccccCCccHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 34567899999999999999999999999 99999999999999999999999999999999999998764 6799999
Q ss_pred HHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHh-cCCCCC---------------------
Q psy1308 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLK-SGADPT--------------------- 216 (607)
Q Consensus 159 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~--------------------- 216 (607)
+..|+.+++++|+++|++++..+. .|.||||+|+..|+.++++.|+. .|++++
T Consensus 114 ~~~g~~~~v~~Ll~~g~~~~~~~~-----~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (299)
T 1s70_B 114 ASCGYLDIAEYLISQGAHVGAVNS-----EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188 (299)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhCCCCCCCcCC-----CCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhcc
Confidence 999999999999999999987744 49999999999999999988775 355543
Q ss_pred -----ccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHHHHHHhHhhhhHHHHHHHH
Q psy1308 217 -----VKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIIS 281 (607)
Q Consensus 217 -----~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~l~~~i~Gq~~ai~~l~ 281 (607)
..+..|.||||+|+..|+.+++++|++.|++... .+..+.+||+.+... |+...++.+.
T Consensus 189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~---~d~~g~tpL~~A~~~---~~~~~v~~Ll 252 (299)
T 1s70_B 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI---KDYDGWTPLHAAAHW---GKEEACRILV 252 (299)
T ss_dssp CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC---CCTTCCCHHHHHHHT---TCHHHHHHHH
T ss_pred CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC---cCCCCCcHHHHHHhc---CCHHHHHHHH
Confidence 3567899999999999999999999999988763 467889999666543 4555555444
No 52
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=2.7e-30 Score=257.25 Aligned_cols=190 Identities=16% Similarity=0.169 Sum_probs=169.4
Q ss_pred CchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcC
Q psy1308 30 QSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENS 109 (607)
Q Consensus 30 g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 109 (607)
.++++|.|+..|+.+.++.++... ....++..|..|.||||+||..|+.++|++|++.|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~---------------------~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g 134 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARL---------------------LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSG 134 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHH---------------------HHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS
T ss_pred hccCCCHHHHHHHHHHHHHHHHHH---------------------HhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence 457778888888888877775331 11124678999999999999999999999999999
Q ss_pred CCCCccCCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCCC--CCchHHHHHHcCCccHHHHHHhcCCCccccCC
Q psy1308 110 KLDVNMRHPLGWTPLHVAA-----INGKVDNVRVLLEAGANPNLGD--LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLN 182 (607)
Q Consensus 110 ~~~~~~~d~~g~tpLh~A~-----~~g~~~~v~~Ll~~ga~~~~~d--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 182 (607)
..+++.+|..|+||||+|+ ..++.+++++|++.|++++..+ ++||||+|+..|+.+++++|+++|++++..+.
T Consensus 135 ~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~ 214 (276)
T 4hbd_A 135 VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD 214 (276)
T ss_dssp CCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Confidence 4499999999999999999 6789999999999999988865 57899999999999999999999999988754
Q ss_pred CCcCcCCcchhhHHHhcCCHHHHHHHHh-cCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 183 PNMTFLGFSALHYGVVAGNTEVVELLLK-SGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 183 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
.|+||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|+..|+.+++++|+++.
T Consensus 215 -----~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 215 -----DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp -----TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 49999999999999999999999 89999999999999999999999999999999875
No 53
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.5e-29 Score=231.35 Aligned_cols=159 Identities=28% Similarity=0.342 Sum_probs=146.6
Q ss_pred cCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHH
Q psy1308 82 CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTA 159 (607)
Q Consensus 82 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~ 159 (607)
.+..|.||||.|+..|+.+++++|++.++.+++..+..|+||||+|+..|+.+++++|+++|++++..|. +||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 4667899999999999999999999987789999999999999999999999999999999999998775 67999999
Q ss_pred HcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHH
Q psy1308 160 AEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239 (607)
Q Consensus 160 ~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~ 239 (607)
..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. ++.++++
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~ 157 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVADL-----WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQD 157 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred HcCcHHHHHHHHhCCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHH
Confidence 99999999999999999987744 49999999999999999999999999999999999999999887 8889999
Q ss_pred HHHHhhh
Q psy1308 240 KYAEKYA 246 (607)
Q Consensus 240 ~ll~~~~ 246 (607)
+|+++|+
T Consensus 158 ~L~~~gA 164 (165)
T 3twr_A 158 LLRGDAA 164 (165)
T ss_dssp HHHTC--
T ss_pred HHhhccc
Confidence 9998875
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.4e-29 Score=233.29 Aligned_cols=158 Identities=28% Similarity=0.344 Sum_probs=103.4
Q ss_pred CHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCc
Q psy1308 87 DLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKM 164 (607)
Q Consensus 87 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~ 164 (607)
.||||.||..|+.+++++|++.++.+++.+|..|+||||+|+..|+.+++++|+++|++++..+. +||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 45666666666666666666666333566666666666666666666666666666666665443 4466666666666
Q ss_pred cHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHh
Q psy1308 165 NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEK 244 (607)
Q Consensus 165 ~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~ 244 (607)
+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++
T Consensus 83 ~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 83 DIVGLLLERDVDINIYDW-----NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp HHHHHHHTTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 666666666666655433 377777777777777777777777777777777777777777777777777777777
Q ss_pred hhhHH
Q psy1308 245 YADLQ 249 (607)
Q Consensus 245 ~~~~~ 249 (607)
+++..
T Consensus 158 ~~~~~ 162 (172)
T 3v30_A 158 ILKLF 162 (172)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 66654
No 55
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1e-29 Score=231.60 Aligned_cols=157 Identities=27% Similarity=0.369 Sum_probs=145.7
Q ss_pred CCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHc
Q psy1308 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAE 161 (607)
Q Consensus 84 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~ 161 (607)
....||||.|+..|+.+++++|++++ ++++.+|..|+||||+|+. |+.+++++|+++|++++.++. +||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCC-CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 35679999999999999999999998 9999999999999999999 999999999999999998765 6799999999
Q ss_pred CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC-CCccCCCCCCCCcchhhhhHHHHHHH
Q psy1308 162 KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD-PTVKDNSGHIPSDYAEDANIKQILQK 240 (607)
Q Consensus 162 ~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~Tpl~~A~~~~~~~~~~~ 240 (607)
|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++
T Consensus 81 ~~~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADVNIEDN-----EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155 (162)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999999999987754 499999999999999999999999998 59999999999999999999999999
Q ss_pred HHHhhhh
Q psy1308 241 YAEKYAD 247 (607)
Q Consensus 241 ll~~~~~ 247 (607)
|+++|++
T Consensus 156 Ll~~GAd 162 (162)
T 1ihb_A 156 MQANGAG 162 (162)
T ss_dssp HHHTC--
T ss_pred HHHhCCC
Confidence 9999875
No 56
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2.5e-29 Score=230.93 Aligned_cols=158 Identities=34% Similarity=0.461 Sum_probs=146.9
Q ss_pred cCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHH
Q psy1308 82 CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTA 159 (607)
Q Consensus 82 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~ 159 (607)
....+.|+||.||..|+.++|++|++++ +++|.+|..|+||||+|+..|+.+++++|+++|++++..|. +||||+|+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 3456789999999999999999999998 99999999999999999999999999999999999998765 67999999
Q ss_pred HcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHH
Q psy1308 160 AEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239 (607)
Q Consensus 160 ~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~ 239 (607)
..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++
T Consensus 89 ~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADVNANDM-----EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence 99999999999999999987744 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q psy1308 240 KYAEKY 245 (607)
Q Consensus 240 ~ll~~~ 245 (607)
+|++.|
T Consensus 164 ~L~~~G 169 (169)
T 2y1l_E 164 ILQKLN 169 (169)
T ss_dssp HHHTC-
T ss_pred HHHHcC
Confidence 998764
No 57
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=6.5e-30 Score=260.98 Aligned_cols=177 Identities=17% Similarity=0.226 Sum_probs=146.7
Q ss_pred cCCCC-CCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCC-
Q psy1308 21 KQKPY-KRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGS- 98 (607)
Q Consensus 21 ~~~~~-~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~- 98 (607)
...+. .+..|+||||+||..|+.+++++|++.+..+. ..|..|+||||+|+..|+
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-----------------------~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-----------------------YGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------BCCTTCCCHHHHHHHSSHH
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------CcCCCCCCHHHHHHHhccc
Confidence 44455 68899999999999999999999998865443 668899999999999998
Q ss_pred --HHHHHHHHhcCCCCCccCCCCCCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCCCCC-
Q psy1308 99 --AKELKTFIENSKLDVNMRHPLGWTPLHVAAI----NGKVDNVRVLLEA--------------------GANPNLGDL- 151 (607)
Q Consensus 99 --~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~d~- 151 (607)
.++++.|++.+.++++.+|..|+||||+|+. .|+.+++++|++. |++++..+.
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 257 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc
Confidence 7888888888767899999999999999999 8999999999987 889988765
Q ss_pred -CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchh
Q psy1308 152 -FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230 (607)
Q Consensus 152 -~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~ 230 (607)
+||||+|+. +++|+++ +++.. |..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+
T Consensus 258 g~t~L~~a~~------~~~Ll~~--~~n~~-----d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 258 RKDSILENLD------LKWIIAN--MLNAQ-----DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp --CHHHHHCS------HHHHHHH--TTTCC-----CTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred CCChhHHHHH------HHHHHHh--CCCCC-----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 569999985 8999998 45554 445999999999999999999999999999999999999999998
Q ss_pred hhh
Q psy1308 231 DAN 233 (607)
Q Consensus 231 ~~~ 233 (607)
..|
T Consensus 325 ~~g 327 (327)
T 1sw6_A 325 GLE 327 (327)
T ss_dssp C--
T ss_pred hcC
Confidence 764
No 58
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=5e-30 Score=256.58 Aligned_cols=216 Identities=11% Similarity=0.029 Sum_probs=181.2
Q ss_pred hccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHH
Q psy1308 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHR 157 (607)
Q Consensus 80 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~ 157 (607)
+..|..|.||||+||..|+.++|++|+++| ++++.+| |+||||+|+..|+.+++++|+++|++++.+|. +||||+
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNAG-ALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-GGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence 577899999999999999999999999998 8999884 99999999999999999999999999998765 679999
Q ss_pred HHHcCCccHHHHHHhcCCCccccCCCCcCcCC-cchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHH
Q psy1308 158 TAAEKKMNPFEVLLKREDEFNDVLNPNMTFLG-FSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236 (607)
Q Consensus 158 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g-~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~ 236 (607)
|+..|+.+++++|+++|++++..+.. | .||||+|+..|+.+++++|+++|+++... ..|+||||+|+..|+.+
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~-----g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKT-----GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVD 175 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSS-----GGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCC-----CCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHH
Confidence 99999999999999999999877544 8 79999999999999999999999887333 28999999999999999
Q ss_pred HHHHHHHhhhhHHhhHHHhhccccc-HHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHH
Q psy1308 237 ILQKYAEKYADLQREKEAEERRKYP-LEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAK 315 (607)
Q Consensus 237 ~~~~ll~~~~~~~~~~~~~~~~~~~-L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~ 315 (607)
++++|++.|++.. ..+..+.++ |+.+.. .|+.+.++.+...-........ . ..-.|...+++
T Consensus 176 ~v~~Ll~~gad~n---~~~~~g~t~~L~~A~~---~~~~~~v~~Ll~~gad~~~~~~-~----------a~~~~~~~iv~ 238 (285)
T 3kea_A 176 MMILLLDYMTSTN---TNNSLLFIPDIKLAID---NKDIEMLQALFKYDINIYSANL-E----------NVLLDDAEIAK 238 (285)
T ss_dssp HHHHHHHHHHHTC---TTCCCBCCTTHHHHHH---HTCHHHHHHHTTSCBCSTTTTG-G----------GGTTTCHHHHH
T ss_pred HHHHHHHcCCCCC---cccCCCCChHHHHHHH---cCCHHHHHHHHHcCCCCCCCCh-h----------hhhcCCHHHHH
Confidence 9999999999876 346678887 877665 3677788877554221111111 0 02257888999
Q ss_pred HHHHHh
Q psy1308 316 QLAFYI 321 (607)
Q Consensus 316 ~la~~l 321 (607)
.+.+..
T Consensus 239 ~Ll~~g 244 (285)
T 3kea_A 239 MIIEKH 244 (285)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 888764
No 59
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.5e-29 Score=232.25 Aligned_cols=162 Identities=25% Similarity=0.350 Sum_probs=150.4
Q ss_pred CCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHc
Q psy1308 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAE 161 (607)
Q Consensus 84 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~ 161 (607)
..+.++||.||..|+.++|++|++.++.+++.+|..|+||||+||..|+.+++++|+++|++++..|. +||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 45788999999999999999999997789999999999999999999999999999999999998765 6799999999
Q ss_pred CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHH
Q psy1308 162 KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241 (607)
Q Consensus 162 ~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~l 241 (607)
|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L 157 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAVNE-----HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999987754 499999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHh
Q psy1308 242 AEKYADLQR 250 (607)
Q Consensus 242 l~~~~~~~~ 250 (607)
++.+++...
T Consensus 158 ~~~g~~~~~ 166 (179)
T 3f6q_A 158 EKMGQNLNR 166 (179)
T ss_dssp HHTTCCCSC
T ss_pred HHhhcCccc
Confidence 999988753
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.8e-29 Score=232.44 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=127.2
Q ss_pred hhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHH
Q psy1308 79 LLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVH 156 (607)
Q Consensus 79 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~ 156 (607)
++..+..|.||||+|+..|+.++|++|++++ ++++.+|..|+||||+|+..|+.+++++|+++|++++..|. +||||
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 107 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLL 107 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 5678899999999999999999999999999 99999999999999999999999999999999999998765 67999
Q ss_pred HHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCC
Q psy1308 157 RTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225 (607)
Q Consensus 157 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp 225 (607)
+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus 108 ~A~~~~~~~~v~~Ll~~ga~~~~~~~-----~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 108 YAVRGNHVKCVEALLARGADLTTEAD-----SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHcCCHHHHHHHHHcCCCccccCC-----CCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 99999999999999999999987754 49999999999999999999999999999999999887
No 61
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.3e-30 Score=256.38 Aligned_cols=175 Identities=23% Similarity=0.297 Sum_probs=137.9
Q ss_pred hccCCCCCHHHHHHHHcCCHH-HHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHH
Q psy1308 80 LECQSIKDLTLFRAARYGSAK-ELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVH 156 (607)
Q Consensus 80 ~~~~~~g~t~Lh~A~~~g~~~-~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~ 156 (607)
+..+..|.||||+|+..++.+ ++++|++.| +++|.+|.+|+||||+||..|+.++|++|++.|++++..+. .||+|
T Consensus 46 ~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~ 124 (269)
T 4b93_B 46 SAADPEFCHPLCQCPKCAPAQKRLAKVPASG-LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLH 124 (269)
T ss_dssp -----------------------------CC-CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cccCccCCCHHHHHHHhCCHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccc
Confidence 456778999999999988764 789999998 99999999999999999999999999999999999998665 67999
Q ss_pred HHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHH
Q psy1308 157 RTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236 (607)
Q Consensus 157 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~ 236 (607)
+|+..++.+++++|+++|++++..+. .|+||||+||..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.+
T Consensus 125 ~a~~~~~~~~~~~Ll~~g~~~n~~d~-----~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~ 199 (269)
T 4b93_B 125 LACQQGHFQVVKCLLDSNAKPNKKDL-----SGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199 (269)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCT-----TCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred cccccChHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHH
Confidence 99999999999999999999987744 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhhHHHhhcccccHH
Q psy1308 237 ILQKYAEKYADLQREKEAEERRKYPLE 263 (607)
Q Consensus 237 ~~~~ll~~~~~~~~~~~~~~~~~~~L~ 263 (607)
++++|++.|++... .+..|.|||+
T Consensus 200 ~v~~Ll~~Gad~~~---~d~~G~TpL~ 223 (269)
T 4b93_B 200 VVELLLLHGASVQV---LNKRQRTAVD 223 (269)
T ss_dssp HHHHHHHTTCCSCC---CCTTSCCSGG
T ss_pred HHHHHHHCCCCCCC---cCCCCCCHHH
Confidence 99999999998763 4678899993
No 62
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=1.9e-28 Score=231.46 Aligned_cols=181 Identities=19% Similarity=0.203 Sum_probs=161.4
Q ss_pred hhhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccC
Q psy1308 4 ILVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQ 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ 83 (607)
+.....+.+..++.......+..+..|.||||+||..|+.+++++|++.+... +..+
T Consensus 13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------------~~~~ 69 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-----------------------NLQN 69 (201)
T ss_dssp HHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------------TCCC
T ss_pred HHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------------CCCC
Confidence 34445566777777777677888899999999999999999999999876543 3567
Q ss_pred CCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCC--CchHHHHHH
Q psy1308 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG-ANPNLGDL--FNTVHRTAA 160 (607)
Q Consensus 84 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~--~~~l~~A~~ 160 (607)
..|.||||+|+..|+.+++++|++.++.+++.+|..|.||||+|+..|+.+++++|+++| ++++.+|. +||||+|+.
T Consensus 70 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 149 (201)
T 3hra_A 70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149 (201)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH
Confidence 889999999999999999999997776899999999999999999999999999999999 89998765 679999999
Q ss_pred cCC-----ccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcC
Q psy1308 161 EKK-----MNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212 (607)
Q Consensus 161 ~~~-----~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 212 (607)
.++ .+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|
T Consensus 150 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~-----g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 150 LREGNQLYQDIVKLLMENGADQSIKDNS-----GRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp SSCCSHHHHHHHHHHHHTTCCTTCCCTT-----SCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred hccchhhHHHHHHHHHHCCCCCCccCCC-----CCCHHHHHHHcCCHhHHHHHHhcC
Confidence 998 89999999999999877544 999999999999999999999987
No 63
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=8.9e-29 Score=223.25 Aligned_cols=149 Identities=31% Similarity=0.391 Sum_probs=140.2
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCC
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKK 163 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~ 163 (607)
..|+||.|+..|+.+++++|++.+ ++++ .+..|.||||+|+..|+.+++++|+++|++++..+. +||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g-~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANG-APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT-CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcC-CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 468999999999999999999998 7776 588999999999999999999999999999998765 679999999999
Q ss_pred ccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHH
Q psy1308 164 MNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241 (607)
Q Consensus 164 ~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~l 241 (607)
.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDM-----LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999987754 499999999999999999999999999999999999999999999999999876
No 64
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=2.6e-29 Score=247.21 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=166.0
Q ss_pred CCCHHHHHHHHcCCHH----HHHHHHhcCCCCCcc----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC----
Q psy1308 85 IKDLTLFRAARYGSAK----ELKTFIENSKLDVNM----RHPLGWTPLHVAAIN---GKVDNVRVLLEAGANPNLG---- 149 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~---- 149 (607)
.|.||||+||..|+.+ ++++|++.+ +++|. +|..|+||||+|+.. |+.+++++|+++|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g-~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS-KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcC-CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 4789999999999997 667777788 99998 899999999999999 9999999999999988743
Q ss_pred ---------CCCchHHHHHHcCCccHHHHHHhcCCCccccCCC--------CcCcCCcchhhHHHhcCCHHHHHHHHh--
Q psy1308 150 ---------DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNP--------NMTFLGFSALHYGVVAGNTEVVELLLK-- 210 (607)
Q Consensus 150 ---------d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--------~~d~~g~TpLh~A~~~g~~~~v~~Ll~-- 210 (607)
+++||||+|+..|+.+++++|+++|++++..+.. ..|..|+||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 3688999999999999999999999999877542 123349999999999999999999999
Q ss_pred -cCCCCCccCCCCCCCCcchhh--hhHHH-------HHHHHHHhhhhHHhh----HHHhhcccccHHHHHHhHhhhhHHH
Q psy1308 211 -SGADPTVKDNSGHIPSDYAED--ANIKQ-------ILQKYAEKYADLQRE----KEAEERRKYPLEQRLKDRIVGQESA 276 (607)
Q Consensus 211 -~gad~~~~d~~g~Tpl~~A~~--~~~~~-------~~~~ll~~~~~~~~~----~~~~~~~~~~L~~~l~~~i~Gq~~a 276 (607)
+|+|++.+|..|+||||+|+. .++.+ ++++|++.|++.... +..+..+.+||+.+... |+.+.
T Consensus 160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~---g~~~~ 236 (256)
T 2etb_A 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE---GKIEI 236 (256)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT---TCHHH
T ss_pred ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHh---CCHHH
Confidence 999999999999999999998 77887 999999999987210 24467889999666543 45566
Q ss_pred HHHHHHHH
Q psy1308 277 INIISAAI 284 (607)
Q Consensus 277 i~~l~~~i 284 (607)
++.+.+.-
T Consensus 237 v~~Ll~~g 244 (256)
T 2etb_A 237 FRHILQRE 244 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCC
Confidence 66555443
No 65
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.4e-28 Score=230.97 Aligned_cols=161 Identities=18% Similarity=0.159 Sum_probs=147.2
Q ss_pred CCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHH
Q psy1308 23 KPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKEL 102 (607)
Q Consensus 23 ~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v 102 (607)
.+..+..|+||||+||..|+.+++++|+..+.. ++..+..|.||||+|+..|+.+++
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------------------~~~~~~~g~t~L~~A~~~~~~~~v 84 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-----------------------LEDKDIEGSTALIWAVKNNRLGIA 84 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-----------------------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-----------------------cccccccCccHHHHHHHcCCHHHH
Confidence 355788899999999999999999999876432 235678899999999999999999
Q ss_pred HHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCcccc
Q psy1308 103 KTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDV 180 (607)
Q Consensus 103 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 180 (607)
++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. +||||+|+..|+.+++++|+++|++++..
T Consensus 85 ~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 163 (192)
T 2rfm_A 85 EKLLSKG-SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163 (192)
T ss_dssp HHHHHHT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred HHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 9999999 99999999999999999999999999999999999999764 67999999999999999999999999877
Q ss_pred CCCCcCcCCcchhhHHHhcCCHHHHHHHHhcC
Q psy1308 181 LNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212 (607)
Q Consensus 181 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 212 (607)
+. .|+||||+|+..|+.+++++|+++|
T Consensus 164 ~~-----~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 164 DL-----TGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CT-----TSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-----CCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 54 4999999999999999999999875
No 66
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=5.2e-29 Score=247.59 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=146.5
Q ss_pred CCcCCchHHHHHHhc---CChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHH
Q psy1308 26 KRGFQSSKLFYTTQS---TQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKEL 102 (607)
Q Consensus 26 ~~~~g~t~L~~A~~~---g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v 102 (607)
.+..|.||||+||.. |+.+++++|+..+...... . .. ........|..|.||||+|+..|+.++|
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~--------~--~~--i~~~~~~~d~~g~tpL~~A~~~g~~~~v 117 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL--------K--QF--VNASYTDSYYKGQTALHIAIERRNMTLV 117 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH--------H--HH--HTCCCCSTTTTTCCHHHHHHHTTCHHHH
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch--------h--HH--hhcccccccCCCCCHHHHHHHcCCHHHH
Confidence 477899999999987 9999999999875432210 0 00 0011234677999999999999999999
Q ss_pred HHHHhcCCCCCccCCC--------------CCCcHHHHHHHcCCHHHHHHHHH---cCCCCCCCCC--CchHHHHHHcCC
Q psy1308 103 KTFIENSKLDVNMRHP--------------LGWTPLHVAAINGKVDNVRVLLE---AGANPNLGDL--FNTVHRTAAEKK 163 (607)
Q Consensus 103 ~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~--~~~l~~A~~~~~ 163 (607)
++|+++| ++++.++. .|+||||+|+..|+.+++++|++ +|++++.+|. +||||+|+..|+
T Consensus 118 ~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~ 196 (273)
T 2pnn_A 118 TLLVENG-ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196 (273)
T ss_dssp HHHHHTT-CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHHHCC-CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccC
Confidence 9999998 99999987 79999999999999999999999 9999999765 679999999998
Q ss_pred ---------ccHHHHHHhcCCCccccCC--CCcCcCCcchhhHHHhcCCHHHHHHHHhcCC-CCCccCCCCCCCCc
Q psy1308 164 ---------MNPFEVLLKREDEFNDVLN--PNMTFLGFSALHYGVVAGNTEVVELLLKSGA-DPTVKDNSGHIPSD 227 (607)
Q Consensus 164 ---------~~~~~~Ll~~g~~~~~~~~--~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~Tpl~ 227 (607)
.+++++|+++|++++.... +..|..|+||||+|+..|+.+++++|+++|| |+......+++|-+
T Consensus 197 ~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred cchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 7899999999999874110 1124559999999999999999999999999 99998888887754
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=3.1e-28 Score=221.67 Aligned_cols=156 Identities=20% Similarity=0.200 Sum_probs=140.2
Q ss_pred CCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhc
Q psy1308 29 FQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIEN 108 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 108 (607)
...||||+|+..|+.+++++|++.+... +..+..|.||||+|+. |+.+++++|+++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-----------------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~ 59 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-----------------------NAQNGFGRTALQVMKL-GNPEIARRLLLR 59 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-----------------------TCCCTTSCCHHHHCCS-SCHHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-----------------------cccCccCccHHHHHHc-CcHHHHHHHHHc
Confidence 3569999999999999999998765432 3567899999999999 999999999999
Q ss_pred CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCC-ccccCCCCc
Q psy1308 109 SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDE-FNDVLNPNM 185 (607)
Q Consensus 109 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~ 185 (607)
+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. +||||+|+..|+.+++++|+++|++ ++..
T Consensus 60 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----- 133 (162)
T 1ihb_A 60 G-ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR----- 133 (162)
T ss_dssp T-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC-----
T ss_pred C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCc-----
Confidence 8 99999999999999999999999999999999999998765 6799999999999999999999998 4555
Q ss_pred CcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 186 TFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 186 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
|..|+||||+|+..|+.+++++|+++|||
T Consensus 134 ~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 134 NHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 34499999999999999999999999986
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=2.8e-28 Score=223.34 Aligned_cols=159 Identities=15% Similarity=0.138 Sum_probs=145.8
Q ss_pred cCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHh
Q psy1308 28 GFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIE 107 (607)
Q Consensus 28 ~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 107 (607)
+.|+||||+|+..|+.+++++|+..+.. ++..|..|.||||+|+..|+.+++++|++
T Consensus 1 G~~~t~L~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 57 (167)
T 3v31_A 1 GANSLSVHQLAAQGEMLYLATRIEQENV-----------------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57 (167)
T ss_dssp CTTCCCHHHHHHTTCHHHHHHHHHHSSC-----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcchHHHHHHCCCHHHHHHHHHcCCC-----------------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 3589999999999999999999876533 24678899999999999999999999999
Q ss_pred cCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCc
Q psy1308 108 NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNM 185 (607)
Q Consensus 108 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 185 (607)
++ ++++.+|..|.||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+++++|+++|++++..+.
T Consensus 58 ~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--- 133 (167)
T 3v31_A 58 NG-ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD--- 133 (167)
T ss_dssp TT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---
T ss_pred cC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---
Confidence 98 99999999999999999999999999999999999998765 6799999999999999999999999987744
Q ss_pred CcCCcchhhHHHhcCCHHHHHHHHhcCCCC
Q psy1308 186 TFLGFSALHYGVVAGNTEVVELLLKSGADP 215 (607)
Q Consensus 186 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~ 215 (607)
.|+||||+|+..|+.+++++|++++++.
T Consensus 134 --~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 134 --SGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp --TSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4999999999999999999999987654
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.4e-30 Score=251.69 Aligned_cols=185 Identities=16% Similarity=0.031 Sum_probs=164.0
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHH
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELK 103 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~ 103 (607)
+..+..|.||||+||..|+.+++++|+..+... +..|..|.||||+||..|+.++|+
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~d~~g~tpLh~A~~~g~~~~v~ 71 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-----------------------SQPNEEGITALHNAICGANYSIVD 71 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-----------------------TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-----------------------CCCCCCCCCHHHHHHHcCCHHHHH
Confidence 345667889999999999999999998765432 356789999999999999999999
Q ss_pred HHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCCchHHHH--HHcCCccHHHHHHhcCCCcc
Q psy1308 104 TFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG---DLFNTVHRT--AAEKKMNPFEVLLKREDEFN 178 (607)
Q Consensus 104 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~---d~~~~l~~A--~~~~~~~~~~~Ll~~g~~~~ 178 (607)
+|++.| +++|.+|..|+||||+|+..|+.+++++|+++|++++.. +++||||+| +..|+.+++++|+++|++++
T Consensus 72 ~Ll~~g-a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~ 150 (229)
T 2vge_A 72 FLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG 150 (229)
T ss_dssp HHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc
Confidence 999998 999999999999999999999999999999999999986 457899999 99999999999999999998
Q ss_pred ccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC--CCccCCCCCCCCcchhhhhHHHHHHH
Q psy1308 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD--PTVKDNSGHIPSDYAEDANIKQILQK 240 (607)
Q Consensus 179 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~g~Tpl~~A~~~~~~~~~~~ 240 (607)
..+. .|.||||.++..+.. ++|++.|++ ++.+|..|+||||+|+..|+.++++.
T Consensus 151 ~~~~-----~~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 151 LMNS-----GAVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp TSGG-----GEEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred cccC-----CchHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 8744 499999976655433 678899988 77889999999999999999988865
No 70
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=9.6e-28 Score=220.32 Aligned_cols=159 Identities=26% Similarity=0.287 Sum_probs=142.9
Q ss_pred CCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHH
Q psy1308 25 YKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKT 104 (607)
Q Consensus 25 ~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ 104 (607)
.....+.||||+||..|+.+++++|++.+... +..+..|.||||+|+..|+.+++++
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~~~g~t~L~~A~~~~~~~~v~~ 65 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-----------------------NAEDASGWTPLHLAAFNGHLEIVEV 65 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-----------------------TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-----------------------CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 34566789999999999999999999876443 3567889999999999999999999
Q ss_pred HHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCC
Q psy1308 105 FIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLN 182 (607)
Q Consensus 105 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 182 (607)
|++++ ++++.+|..|+||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+++++|+++|++++..+.
T Consensus 66 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 144 (169)
T 2y1l_E 66 LLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144 (169)
T ss_dssp HHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 99998 99999999999999999999999999999999999998765 6799999999999999999999999887644
Q ss_pred CCcCcCCcchhhHHHhcCCHHHHHHHHhcC
Q psy1308 183 PNMTFLGFSALHYGVVAGNTEVVELLLKSG 212 (607)
Q Consensus 183 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 212 (607)
.|.||||+|+..|+.+++++|+++|
T Consensus 145 -----~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 145 -----FGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp -----TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred -----CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 4999999999999999999999886
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=3.2e-28 Score=220.16 Aligned_cols=152 Identities=24% Similarity=0.329 Sum_probs=143.3
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCC
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKK 163 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~ 163 (607)
+.||||.||..|+.+++++|++..+.+++.+|..|+||||+ +..|+.+++++|+++|++++..|. +||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 56999999999999999999999657999999999999999 999999999999999999998765 679999999999
Q ss_pred ccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHH
Q psy1308 164 MNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAE 243 (607)
Q Consensus 164 ~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~ 243 (607)
.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++ ++++.+|..|+||||+|+..++.+++++|++
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDG-----TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCT-----TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCcCC-----CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 9999999999999987754 499999999999999999999999 9999999999999999999999999999986
Q ss_pred h
Q psy1308 244 K 244 (607)
Q Consensus 244 ~ 244 (607)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 4
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=9.7e-28 Score=222.48 Aligned_cols=166 Identities=17% Similarity=0.036 Sum_probs=150.2
Q ss_pred CCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhc
Q psy1308 29 FQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIEN 108 (607)
Q Consensus 29 ~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 108 (607)
.+.+|||.||..|+.+++++|+..+... ++..+..|.||||+||..|+.+++++|++.
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 61 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTEND----------------------LNQGDDHGFSPLHWACREGRSAVVEMLIMR 61 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSC----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccc----------------------ccccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 4679999999999999999999774322 246788999999999999999999999999
Q ss_pred CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcC
Q psy1308 109 SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMT 186 (607)
Q Consensus 109 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d 186 (607)
+ ++++.+|..|+||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+++++|+++|++++..+.
T Consensus 62 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~---- 136 (179)
T 3f6q_A 62 G-ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK---- 136 (179)
T ss_dssp T-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT----
T ss_pred C-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhcc----
Confidence 8 99999999999999999999999999999999999999765 6799999999999999999999999987754
Q ss_pred cCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCC
Q psy1308 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSG 222 (607)
Q Consensus 187 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 222 (607)
.|.||||+|+..++.+++++|+++|++++..+..+
T Consensus 137 -~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 137 -YGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp -TSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 49999999999999999999999999999887665
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=8.3e-28 Score=219.69 Aligned_cols=159 Identities=21% Similarity=0.298 Sum_probs=141.4
Q ss_pred CCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHH
Q psy1308 26 KRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTF 105 (607)
Q Consensus 26 ~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L 105 (607)
.+..|.||||+|+..|+.+++++|+...... ....+..|.||||+|+..|+.+++++|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~L 61 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN----------------------CRDIEGRQSTPLHFAAGYNRVSVVEYL 61 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT----------------------CCCTTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC----------------------ccccccCCCCHHHHHHHcChHHHHHHH
Confidence 4567899999999999999999998754321 235677899999999999999999999
Q ss_pred HhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCC
Q psy1308 106 IENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNP 183 (607)
Q Consensus 106 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 183 (607)
++++ ++++.+|..|+||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+++++|+++|++++..+.
T Consensus 62 l~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~- 139 (165)
T 3twr_A 62 LQHG-ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR- 139 (165)
T ss_dssp HHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-
T ss_pred HhcC-CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-
Confidence 9998 99999999999999999999999999999999999998775 6799999999999999999999999987754
Q ss_pred CcCcCCcchhhHHHhcCCHHHHHHHHhcCC
Q psy1308 184 NMTFLGFSALHYGVVAGNTEVVELLLKSGA 213 (607)
Q Consensus 184 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 213 (607)
.|+||||+|+. |+.+++++|+++||
T Consensus 140 ----~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 140 ----DGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp ----TSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred ----CCCChhHhHhc-CChHHHHHHhhccc
Confidence 49999999877 99999999999886
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=2.1e-28 Score=238.15 Aligned_cols=178 Identities=15% Similarity=0.086 Sum_probs=127.6
Q ss_pred cCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHh
Q psy1308 28 GFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIE 107 (607)
Q Consensus 28 ~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 107 (607)
..|.||||.|+..++.++++.|+..+.... .+..|.||||.|+..|+.++|++|++
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~------------------------~~~~~~t~L~~A~~~g~~~~v~~Ll~ 58 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK------------------------FNPLPLALLLDSSLEGEFDLVQRIIY 58 (239)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHTCHHHHHHHTS
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcc------------------------cCchhhHHHHHHHHcCCHHHHHHHHH
Confidence 458999999999999999999988765433 23567899999999999999999999
Q ss_pred cCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCc
Q psy1308 108 NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNM 185 (607)
Q Consensus 108 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 185 (607)
.+ +++|.+|..|+||||+||..|+.+++++|+++|++++.+|. +||||+|+..|+.+++++|+++|++++..+..
T Consensus 59 ~g-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-- 135 (239)
T 1ycs_B 59 EV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS-- 135 (239)
T ss_dssp TT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS--
T ss_pred cC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCC--
Confidence 98 89999999999999999999999999999999999998765 67999999999999999999999999877544
Q ss_pred CcCCcchhhHH--HhcCCHHHHHHHHhcCCCCCcc---------CCCCCCCCcchhhhhH
Q psy1308 186 TFLGFSALHYG--VVAGNTEVVELLLKSGADPTVK---------DNSGHIPSDYAEDANI 234 (607)
Q Consensus 186 d~~g~TpLh~A--~~~g~~~~v~~Ll~~gad~~~~---------d~~g~Tpl~~A~~~~~ 234 (607)
.++||||+| +..|+.+++++|+++|++++.. +..+.+|++++...|.
T Consensus 136 --~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 136 --DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp --SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred --CCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 134999999 7889999999999999988876 5668888888877664
No 75
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=6.7e-29 Score=253.45 Aligned_cols=218 Identities=12% Similarity=-0.017 Sum_probs=161.2
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccc---c-----------ccCCh---HHHH----------HHccCc
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNN---T-----------CMYNN---LLFA----------SACSLA 76 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~---~-----------~~~~~---l~~a----------~~~~~~ 76 (607)
+..+..|.|+++ |+.+++++|+..+....... + ..... .+.+ .+...+
T Consensus 46 ~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g 120 (327)
T 1sw6_A 46 MKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 120 (327)
T ss_dssp EECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSC
T ss_pred ccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcC
Confidence 445678899987 99999999997764433210 0 00000 0111 223344
Q ss_pred cchhc-cCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCCCCCC-
Q psy1308 77 LTLLE-CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGK---VDNVRVLLEAG-ANPNLGD- 150 (607)
Q Consensus 77 ~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~g-a~~~~~d- 150 (607)
..++. .|..|.||||+||..|+.++|++||++| +++|.+|..|+||||+|+..|+ .++++.|++.+ ++++..|
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~ 199 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 199 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC
Confidence 55666 7889999999999999999999999998 9999999999999999999888 68888888876 6677655
Q ss_pred -CCchHHHHHH----cCCccHHHHHHhc--------------------CCCccccCCCCcCcCCcchhhHHHhcCCHHHH
Q psy1308 151 -LFNTVHRTAA----EKKMNPFEVLLKR--------------------EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205 (607)
Q Consensus 151 -~~~~l~~A~~----~~~~~~~~~Ll~~--------------------g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v 205 (607)
++||||+|+. .|+.+++++|++. |++++.. |..|+||||+|+. +
T Consensus 200 ~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-----~~~g~t~L~~a~~------~ 268 (327)
T 1sw6_A 200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-----NGERKDSILENLD------L 268 (327)
T ss_dssp TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------------CHHHHHCS------H
T ss_pred CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-----cccCCChhHHHHH------H
Confidence 4679999998 8899999999887 6666655 3449999999986 8
Q ss_pred HHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccHH
Q psy1308 206 ELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLE 263 (607)
Q Consensus 206 ~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~ 263 (607)
++|+++ +++.+|..|+||||+|+..|+.+++++|++.|++.. ..+..+.+||+
T Consensus 269 ~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~---~~d~~G~TpL~ 321 (327)
T 1sw6_A 269 KWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF---IANKSGLRPVD 321 (327)
T ss_dssp HHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT---CCCTTSCCGGG
T ss_pred HHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc---ccCCCCCCHHH
Confidence 888888 689999999999999999999999999999999876 34677888883
No 76
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=3.2e-28 Score=239.91 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=161.1
Q ss_pred CCCCCHHHHHHHHcCCHHHHHHHHh----cCCCCCccCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCCC-----
Q psy1308 83 QSIKDLTLFRAARYGSAKELKTFIE----NSKLDVNMRH----PLGWTPLHVAA---INGKVDNVRVLLEAGANP----- 146 (607)
Q Consensus 83 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d----~~g~tpLh~A~---~~g~~~~v~~Ll~~ga~~----- 146 (607)
+..|.|+||.||..|+.+.++.|++ .+ ++++..+ ..|+||||+|+ ..|+.+++++|++.|+++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 4578999999999999996555555 77 8888776 67999999999 779999999999998653
Q ss_pred ------CCC--CCCchHHHHHHcCCccHHHHHHhcCCCccccCC---------CCcCcCCcchhhHHHhcCCHHHHHHHH
Q psy1308 147 ------NLG--DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLN---------PNMTFLGFSALHYGVVAGNTEVVELLL 209 (607)
Q Consensus 147 ------~~~--d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~---------~~~d~~g~TpLh~A~~~g~~~~v~~Ll 209 (607)
+.. +++||||+|+..|+.+++++|+++|++++..+. ...+..|+||||+|+..|+.+++++|+
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 222 467899999999999999999999999998752 111145999999999999999999999
Q ss_pred h---cCCCCCccCCCCCCCCcchhhhhH---------HHHHHHHHHhhhhHHhh----HHHhhcccccHHHHHHhHhhhh
Q psy1308 210 K---SGADPTVKDNSGHIPSDYAEDANI---------KQILQKYAEKYADLQRE----KEAEERRKYPLEQRLKDRIVGQ 273 (607)
Q Consensus 210 ~---~gad~~~~d~~g~Tpl~~A~~~~~---------~~~~~~ll~~~~~~~~~----~~~~~~~~~~L~~~l~~~i~Gq 273 (607)
+ +|++++.+|..|+||||+|+..++ .+++++|++.|++.... +..+..+.+||+.+... |+
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~---g~ 237 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT---GK 237 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT---TC
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc---CC
Confidence 9 999999999999999999997666 79999999999987310 13467889999665433 45
Q ss_pred HHHHHHHHHHH
Q psy1308 274 ESAINIISAAI 284 (607)
Q Consensus 274 ~~ai~~l~~~i 284 (607)
.+.++.+.+.-
T Consensus 238 ~~~v~~Ll~~g 248 (260)
T 3jxi_A 238 IGIFQHIIRRE 248 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 55555554433
No 77
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=223.76 Aligned_cols=206 Identities=17% Similarity=0.115 Sum_probs=172.8
Q ss_pred hhchhhhHHHHHhhcccCCCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccc-cccCChHHHHHHcc---------
Q psy1308 5 LVQRRQLVLCILSNYFKQKPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNN-TCMYNNLLFASACS--------- 74 (607)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~-~~~~~~l~~a~~~~--------- 74 (607)
....-+.+..+++.. ...+..+..|.||||+|+..|+.+++++|+..+....... ..+.++++.|...+
T Consensus 18 ~~g~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll 96 (240)
T 3eu9_A 18 QYGIYERCRELVEAG-YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96 (240)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH
T ss_pred HcCChHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH
Confidence 334455666666654 3456677889999999999999999999999887666543 44789999886444
Q ss_pred -CccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCCCC-
Q psy1308 75 -LALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGK-VDNVRVLLEAGANPNLGDL- 151 (607)
Q Consensus 75 -~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~ga~~~~~d~- 151 (607)
.+...+..+..|.||||+|+..|+.+++++|++++ ++++.++..|.||||+|+..++ .+++++|++.|++++..+.
T Consensus 97 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~ 175 (240)
T 3eu9_A 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175 (240)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc
Confidence 33445667889999999999999999999999998 9999999999999999997776 8999999999999998754
Q ss_pred --CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCc
Q psy1308 152 --FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTV 217 (607)
Q Consensus 152 --~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 217 (607)
.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++...
T Consensus 176 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-----g~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK-----GESALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTT-----SCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-----CCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 57999999999999999999999999877544 99999999999999999999999987654
No 78
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=8.5e-27 Score=210.19 Aligned_cols=149 Identities=23% Similarity=0.328 Sum_probs=136.9
Q ss_pred CchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcC
Q psy1308 30 QSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENS 109 (607)
Q Consensus 30 g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 109 (607)
+.||||+|+..|+.+++++|++.+... ..+..|.||||+|+..|+.+++++|++.+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 57 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF------------------------TTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC------------------------CCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC------------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 469999999999999999998775421 24678999999999999999999999998
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCc
Q psy1308 110 KLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTF 187 (607)
Q Consensus 110 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~ 187 (607)
++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. +||||+|+..|+.+++++|+++|++++..+.
T Consensus 58 -~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~----- 131 (153)
T 1awc_B 58 -VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK----- 131 (153)
T ss_dssp -CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----
T ss_pred -CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC-----
Confidence 99999999999999999999999999999999999999775 6799999999999999999999999987754
Q ss_pred CCcchhhHHHhcCCHHHHHHH
Q psy1308 188 LGFSALHYGVVAGNTEVVELL 208 (607)
Q Consensus 188 ~g~TpLh~A~~~g~~~~v~~L 208 (607)
.|.||||+|+..|+.+++++|
T Consensus 132 ~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 132 FCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHh
Confidence 499999999999999999987
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.6e-26 Score=208.99 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=137.6
Q ss_pred CchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHHhcC
Q psy1308 30 QSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENS 109 (607)
Q Consensus 30 g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 109 (607)
|.||||+||..|+.+++++|+..... ..+..+..|.||||+ |..|+.+++++|+++|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~----------------------~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g 58 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELV----------------------HPDALNRFGKTALQV-MMFGSTAIALELLKQG 58 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCC----------------------CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCc----------------------CccccCCCCCcHHHH-HHcCCHHHHHHHHHCC
Confidence 57999999999999999999877211 123567889999999 9999999999999998
Q ss_pred CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCc
Q psy1308 110 KLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTF 187 (607)
Q Consensus 110 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~ 187 (607)
++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. +||||+|+..|+.+++++|+++ ++++..+.
T Consensus 59 -~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~----- 131 (156)
T 1bd8_A 59 -ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA----- 131 (156)
T ss_dssp -CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT-----
T ss_pred -CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC-----
Confidence 99999999999999999999999999999999999998765 6799999999999999999999 88877644
Q ss_pred CCcchhhHHHhcCCHHHHHHHHhc
Q psy1308 188 LGFSALHYGVVAGNTEVVELLLKS 211 (607)
Q Consensus 188 ~g~TpLh~A~~~g~~~~v~~Ll~~ 211 (607)
.|.||||+|+..|+.+++++|+++
T Consensus 132 ~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 132 RGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhh
Confidence 499999999999999999999974
No 80
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=230.00 Aligned_cols=162 Identities=16% Similarity=0.110 Sum_probs=147.1
Q ss_pred CCCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHH-----HcC
Q psy1308 23 KPYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAA-----RYG 97 (607)
Q Consensus 23 ~~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~-----~~g 97 (607)
.+..+..|+||||+||..|+.+++++|+..+... ++..+..|.||||+|+ ..+
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~----------------------~~~~~~~g~tpL~~a~~~~~~~~~ 161 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK----------------------VDKQNRAGYSPIMLTALATLKTQD 161 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC----------------------TTCCCTTSCCHHHHGGGCCCCSHH
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc----------------------CCCCCCCCCCHHHHHHHHHhhhhh
Confidence 4567888999999999999999999999886522 2467789999999999 678
Q ss_pred CHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHh-cC
Q psy1308 98 SAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLK-RE 174 (607)
Q Consensus 98 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~-~g 174 (607)
+.+++++|++.+ .+++..|..|+||||+|+..|+.++|++|+++|+++|.+|. +||||+|+..|+.+++++|++ .|
T Consensus 162 ~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g 240 (276)
T 4hbd_A 162 DIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS 240 (276)
T ss_dssp HHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT
T ss_pred hHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence 999999999999 88999999999999999999999999999999999999765 679999999999999999999 89
Q ss_pred CCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcC
Q psy1308 175 DEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212 (607)
Q Consensus 175 ~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 212 (607)
++++..+.. |+||||+|+..|+.+++++|++++
T Consensus 241 ad~~~~d~~-----g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 241 CDISLTDRD-----GSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CCTTCCCTT-----SCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCcCcCCC-----CCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999887544 999999999999999999999874
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.1e-27 Score=231.14 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=118.3
Q ss_pred CCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHc
Q psy1308 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAE 161 (607)
Q Consensus 84 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~ 161 (607)
..|.||||.|+..|+.++++.|+++| ++++.. ..|.||||+|+..|+.+++++|+++|++++..|. +||||+|+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g-~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHG-MRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccC-CCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 46899999999999999999999999 899864 7899999999999999999999999999998765 6799999999
Q ss_pred CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCC-CCCcch--hhhhHHHHH
Q psy1308 162 KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGH-IPSDYA--EDANIKQIL 238 (607)
Q Consensus 162 ~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~-Tpl~~A--~~~~~~~~~ 238 (607)
|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|++++.+|..|. ||||+| +..|+.+++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~-----g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSD-----GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTT-----CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred CCHHHHHHHHHcCCCCCccCCC-----CCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 9999999999999999887554 99999999999999999999999999999998887 999999 788999999
Q ss_pred HHHHHhhhhHHh
Q psy1308 239 QKYAEKYADLQR 250 (607)
Q Consensus 239 ~~ll~~~~~~~~ 250 (607)
++|++.+++...
T Consensus 156 ~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 156 QFLYGVQEKMGI 167 (239)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHhhhcccc
Confidence 999999988764
No 82
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.94 E-value=1.5e-26 Score=239.25 Aligned_cols=273 Identities=21% Similarity=0.330 Sum_probs=178.3
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHh----hCCCCCC---CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRK----ENGWTDD---DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~----~~~~~~~---~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+...+...++||+.+++.+..++... ..+.... ..+..++|+||+|||||.+|+.+++.+. .+|+.++
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~----~~~~~~~ 83 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD----VPFTMAD 83 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT----CCEEEEE
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCEEEec
Confidence 355667778999999999998887422 2222111 1234899999999999999999999884 4699999
Q ss_pred cccccccchhHhhhcCCCCCccCCCCchhhHHHhh-------CCCeEEEEecCCccCHH--------------HHHHHHH
Q psy1308 334 MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK-------CPNAVVLFDEVDKAHPD--------------VLTVLLQ 392 (607)
Q Consensus 334 ~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~-------~~~~vl~lDEiek~~~~--------------~~~~Ll~ 392 (607)
|+.+.. .+|+|....+.+...+.. ++++|||||||+++++. +|+.|++
T Consensus 84 ~~~l~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~ 152 (363)
T 3hws_A 84 ATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLK 152 (363)
T ss_dssp HHHHTT-----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHH
T ss_pred hHHhcc-----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHH
Confidence 986532 223443333444444433 45789999999999987 9999999
Q ss_pred hhcccee---ecCCCcEEecC--------ceEEEEecCc-chHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcch
Q psy1308 393 LFDEGRL---TDGKGKTIECK--------DAIFVMTSNL-ASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISR 460 (607)
Q Consensus 393 ~~~~~~~---~~~~g~~~~~~--------~~~iI~tsn~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
+++ |.. .+..|+..++. |.+||+++|. +.+.+.+...+.. . .+................
T Consensus 153 ~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~-~-------~~gf~~~~~~~~~~~~~~ 223 (363)
T 3hws_A 153 LIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETG-S-------GIGFGATVKAKSDKASEG 223 (363)
T ss_dssp HHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCC-C-------------------CCSCHH
T ss_pred Hhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhcc-c-------cCCccccccccccchhhH
Confidence 999 553 34455555444 4445555444 6666655432110 0 000000000000001112
Q ss_pred hhhhhhhhHHHHhc-cCChhhhccccceeeeccCCHHHHHHHHHH----HHHHHHHHHhhcCCcEEEeCHhHHHHHHc-c
Q psy1308 461 HFKDHVVQPILKRH-FRRDEFLGRINEIVYFLPFSKSELHTLVCR----ELNFWAKKALDKHNINIVWDIDVETILAD-G 534 (607)
Q Consensus 461 ~~~~~~~~~~l~~~-f~~~el~~ri~~iv~f~pl~~~~~~~i~~~----~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~ 534 (607)
.+.+.+....+... |+ |+|++||+.+++|.|++++++.+|+.. .+..+.+++.. .++.+.++++++++|++ +
T Consensus 224 ~l~~~v~~~~l~~~~~~-~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~-~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 224 ELLAQVEPEDLIKFGLI-PEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNL-EGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp HHHHTCCHHHHHHHTCC-HHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHT-TTCEEEECHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHcCCC-HHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCceEEECHHHHHHHHHhh
Confidence 22333333333333 87 999999999999999999999999998 66666655543 48899999999999986 7
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHH
Q psy1308 535 YDVHYGARSIKHEVERQVVSQLAAA 559 (607)
Q Consensus 535 ~~~~~GaR~L~~~i~~~i~~~l~~~ 559 (607)
|+|++|+|+|+++|++.+.+++++.
T Consensus 302 ~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 302 MARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp HHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred cCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988754
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=6.9e-27 Score=211.58 Aligned_cols=143 Identities=20% Similarity=0.230 Sum_probs=115.8
Q ss_pred hccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--Cc-hHH
Q psy1308 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FN-TVH 156 (607)
Q Consensus 80 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~-~l~ 156 (607)
...+..|.||||+||..|+.++|++|++++ +++|.+|..|+||||+|+ .|+.+++++|+++|++++.+|. +| |||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 356788999999999999999999999998 999999999999999996 9999999999999999999765 66 999
Q ss_pred HHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcch
Q psy1308 157 RTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229 (607)
Q Consensus 157 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A 229 (607)
+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~-----~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDA-----WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCT-----TCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCC-----CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999987754 499999999999999999999999999999999999998744
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=6.4e-27 Score=217.95 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=136.7
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCC--CchHHHH
Q psy1308 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRH-PLGWTPLHVAAINGKV----DNVRVLLEAGANPNLGDL--FNTVHRT 158 (607)
Q Consensus 86 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~~v~~Ll~~ga~~~~~d~--~~~l~~A 158 (607)
+.++|+.||+.|+.+.++.++..+ ++.++ ..|+||||+|+..|+. +++++|+++|+++|.+|. +||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 457899999999999999999865 45555 7799999999999985 599999999999999765 6799999
Q ss_pred HHcCC------ccHHHHHHhcCCCccccCCCCcCcCCc-chhhHHHhcC-----CHHHHHHHHh-cCCCCCccCCCCCCC
Q psy1308 159 AAEKK------MNPFEVLLKREDEFNDVLNPNMTFLGF-SALHYGVVAG-----NTEVVELLLK-SGADPTVKDNSGHIP 225 (607)
Q Consensus 159 ~~~~~------~~~~~~Ll~~g~~~~~~~~~~~d~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~gad~~~~d~~g~Tp 225 (607)
+..++ .+++++|+++|++++..+. .|+ ||||+|+..+ +.+++++|++ +|+|++.+|..|+||
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~-----~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp 157 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITALYK-----PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSSCBG-----GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCccCC-----CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence 99987 4679999999999998754 499 9999999954 4679999999 999999999999999
Q ss_pred CcchhhhhHHHHHHHHHHhhhhH
Q psy1308 226 SDYAEDANIKQILQKYAEKYADL 248 (607)
Q Consensus 226 l~~A~~~~~~~~~~~ll~~~~~~ 248 (607)
||+|+..++.+++++|.+.....
T Consensus 158 L~~A~~~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDYIKKY 180 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998776543
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=2.4e-26 Score=202.88 Aligned_cols=130 Identities=26% Similarity=0.260 Sum_probs=69.4
Q ss_pred CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcC
Q psy1308 111 LDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFL 188 (607)
Q Consensus 111 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~ 188 (607)
++++.+|..|.||||+|+..|+.+++++|+++|++++.+|. +||||+|+. ++.+++++|+++|++++.. |..
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-----~~~ 76 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-----DPA 76 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-----BTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-----CCC
Confidence 34444444444444444444444444444444444444332 334444444 4444444444444444333 223
Q ss_pred -CcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhh
Q psy1308 189 -GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246 (607)
Q Consensus 189 -g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~ 246 (607)
|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 5666666666666666666666666666666666666666666666666666666554
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=3.7e-26 Score=201.64 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=122.1
Q ss_pred chhccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---Cch
Q psy1308 78 TLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL---FNT 154 (607)
Q Consensus 78 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~---~~~ 154 (607)
.++..+..|.||||+|+..|+.+++++|++++ ++++.+|..|+||||+|+. |+.+++++|+++|++++.+|. +||
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 45678899999999999999999999999998 9999999999999999999 999999999999999999764 569
Q ss_pred HHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 155 VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 155 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-----~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARLDVCDA-----WGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCCCCCSS-----SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999987754 499999999999999999999999986
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.93 E-value=6.4e-25 Score=227.88 Aligned_cols=227 Identities=20% Similarity=0.298 Sum_probs=189.5
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..+..+...+.+.... ..++++.|++|+||+.+|+.++....+. ..+|+.+||+.+......+++||
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~------~~~vli~Ge~GtGK~~lAr~ih~~s~r~-~~~fv~v~~~~~~~~~~~~elfg 210 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCA------ECPVLITGESGVGKEVVARLIHKLSDRS-KEPFVALNVASIPRDIFEAELFG 210 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTC------CSCEEEECSTTSSHHHHHHHHHHHSTTT-TSCEEEEETTTSCHHHHHHHHHC
T ss_pred hhhhccHHhhHHHHHHHHhcCC------CCCeEEecCCCcCHHHHHHHHHHhcCCC-CCCeEEEecCCCCHHHHHHHhcC
Confidence 4678888888888877765422 2357999999999999999999988765 78999999999999888999999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+..| |+|... ...+.++.+.+|++|||||+.+++++|..|++++++|.+...+|......++++|++||.+.....+
T Consensus 211 ~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~ 288 (387)
T 1ny5_A 211 YEKGAFTGAVS--SKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK 288 (387)
T ss_dssp BCTTSSTTCCS--CBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH
T ss_pred CCCCCCCCccc--ccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH
Confidence 9887 777543 2457788999999999999999999999999999999999888887778899999999977665432
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc-C--CHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP-F--SKSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p-l--~~~~~~~i~~~ 504 (607)
.+.|+ ++|++|++.+.+..| | +++|+..++..
T Consensus 289 --------------------------------------------~g~fr-~dl~~rl~~~~i~lPpLreR~~Di~~l~~~ 323 (387)
T 1ny5_A 289 --------------------------------------------EGKFR-EDLYYRLGVIEIEIPPLRERKEDIIPLANH 323 (387)
T ss_dssp --------------------------------------------TTSSC-HHHHHHHTTEEEECCCGGGCHHHHHHHHHH
T ss_pred --------------------------------------------cCCcc-HHHHHhhcCCeecCCcchhccccHHHHHHH
Confidence 35587 999999988755555 5 45899999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
++..+.+++... ...+++++++.|.. |+||+|+|+|+++|++.+.
T Consensus 324 ~l~~~~~~~~~~---~~~~~~~a~~~l~~-~~wpGNvreL~~~i~~~~~ 368 (387)
T 1ny5_A 324 FLKKFSRKYAKE---VEGFTKSAQELLLS-YPWYGNVRELKNVIERAVL 368 (387)
T ss_dssp HHHHHHHHTTCC---CCEECHHHHHHHHH-SCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CCCCCHHHHHHHHh-CCCCcHHHHHHHHHHHHHH
Confidence 998877665322 34799999999986 9999999999999998765
No 88
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.3e-26 Score=220.08 Aligned_cols=148 Identities=17% Similarity=0.094 Sum_probs=130.9
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHH
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRT 158 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A 158 (607)
..+.+|.||||+||..|+.++|++|++.+ +++|.+|..|+||||+||..|+.+++++|+++|++++..|. +||||+|
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A 94 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 45677889999999999999999999998 89999999999999999999999999999999999998764 6799999
Q ss_pred HHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHH--HhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhh
Q psy1308 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYG--VVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233 (607)
Q Consensus 159 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~ 233 (607)
+..|+.+++++|+++|++++..++ ..|+||||+| +..|+.+++++|+++|++++.+|..|.||++.++...
T Consensus 95 ~~~g~~~~v~~Ll~~ga~~~~~~~----~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~ 167 (229)
T 2vge_A 95 ASCNDTVICMALVQHGAAIFATTL----SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167 (229)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCS----STTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS
T ss_pred HHcCCHHHHHHHHHcCCCcccccC----CCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc
Confidence 999999999999999999887643 2499999999 8899999999999999999999999999998655443
No 89
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.92 E-value=1.3e-24 Score=223.64 Aligned_cols=226 Identities=22% Similarity=0.307 Sum_probs=187.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..+..+...+.+.... ...+++.|++|+||+.+++.++....+. .+|+.+||+.++.....+++||
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~------~~~vli~GesGtGKe~lAr~ih~~s~r~--~~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS------KAPVLITGESGTGKEIVARLIHRYSGRK--GAFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS------CSCEEEECCTTSSHHHHHHHHHHHHCCC--SCEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhcc------chhheEEeCCCchHHHHHHHHHHhcccc--CCcEEEEcccCChHHHHHHhcC
Confidence 4678888888887777666533 3368899999999999999999988664 3499999999999999999999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+..| |+|.... ..+.++.+.+|+||||||+.+++++|..|++++++|.+...+|......++++|++||.+.....
T Consensus 202 ~~~g~~tga~~~--~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v- 278 (368)
T 3dzd_A 202 HEKGAFTGALTR--KKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEI- 278 (368)
T ss_dssp ECSCSSSSCCCC--EECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHH-
T ss_pred ccccccCCcccc--cCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHH-
Confidence 9887 7775433 35678889999999999999999999999999999999998887777789999999996655432
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccccee-eeccCCH--HHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIV-YFLPFSK--SELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv-~f~pl~~--~~~~~i~~~ 504 (607)
..+.|+ ++|++|++.+. ...||+. +|+..++.+
T Consensus 279 -------------------------------------------~~g~fr-~dL~~rl~~~~i~lPpLreR~~Di~~l~~~ 314 (368)
T 3dzd_A 279 -------------------------------------------KKGNFR-EDLYYRLSVFQIYLPPLRERGKDVILLAEY 314 (368)
T ss_dssp -------------------------------------------HTTSSC-HHHHHHHTSEEEECCCGGGSTTHHHHHHHH
T ss_pred -------------------------------------------HcCCcc-HHHHHHhCCeEEeCCChhhchhhHHHHHHH
Confidence 235687 99999999874 4555644 899999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
++.++..++.. -...++++|++.|.. |+||+|+|+|+++|++.+.
T Consensus 315 ~l~~~~~~~~~---~~~~~~~~a~~~L~~-~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 315 FLKKFAKEYKK---NCFELSEETKEYLMK-QEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHHHTTC---CCCCBCHHHHHHHHT-CCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCCCcCHHHHHHHHh-CCCCcHHHHHHHHHHHHHH
Confidence 99988776532 246799999999996 9999999999999998664
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=6.7e-26 Score=211.03 Aligned_cols=160 Identities=13% Similarity=0.031 Sum_probs=136.9
Q ss_pred CchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccC-CCCCHHHHHHHHcCCH----HHHHH
Q psy1308 30 QSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQ-SIKDLTLFRAARYGSA----KELKT 104 (607)
Q Consensus 30 g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~----~~v~~ 104 (607)
+.++||.|++.|+.+.+..++..+. +..+ ..|+||||+|+.+|+. +++++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~-------------------------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~ 60 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY-------------------------EDKESVLKSNILYDVLRNNNDEARYKISMF 60 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS-------------------------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc-------------------------ccccccCCCCHHHHHHHcCCcchHHHHHHH
Confidence 4588999999999999988865421 1223 5799999999999985 59999
Q ss_pred HHhcCCCCCccCCCCCCcHHHHHHHcCC------HHHHHHHHHcCCCCCCCCC--C-chHHHHHHcCC-----ccHHHHH
Q psy1308 105 FIENSKLDVNMRHPLGWTPLHVAAINGK------VDNVRVLLEAGANPNLGDL--F-NTVHRTAAEKK-----MNPFEVL 170 (607)
Q Consensus 105 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~------~~~v~~Ll~~ga~~~~~d~--~-~~l~~A~~~~~-----~~~~~~L 170 (607)
||++| +++|.+|..|+||||+|+..|+ .+++++|+++|+++|.+|. + ||||+|+..+. .+++++|
T Consensus 61 Ll~~G-advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~L 139 (186)
T 3t8k_A 61 LINKG-ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLI 139 (186)
T ss_dssp HHHTT-CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHH
T ss_pred HHHCC-CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHH
Confidence 99999 9999999999999999999987 6889999999999999875 6 79999999554 4589999
Q ss_pred Hh-cCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCC
Q psy1308 171 LK-REDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDN 220 (607)
Q Consensus 171 l~-~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~ 220 (607)
++ +|++++..+.. |+||||+|+..|+.++|++|.++..+.+.+++
T Consensus 140 l~~~gad~~~~d~~-----G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 140 FSQSGLQLLIKDKW-----GLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp HTSTTCCTTCCCTT-----SCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred HHhcCCCCcccCCC-----CCCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence 99 99999988554 99999999999999999999987666655543
No 91
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.92 E-value=2.6e-24 Score=216.00 Aligned_cols=227 Identities=19% Similarity=0.302 Sum_probs=181.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++.++..+...+...... +.+++++|++|+|||.+|+.++...... ..+|+.++|+........+++||
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPS------DATVLIHGDSGTGKELVARALHACSARS-DRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCST------TSCEEEESCTTSCHHHHHHHHHHHSSCS-SSCCCEEECSSCCHHHHHHHHTC
T ss_pred CcEECCHHHHHHHHHHHHHhCC------CCcEEEECCCCchHHHHHHHHHHhCccc-CCCeEEEeCCCCChHHHHHHhcC
Confidence 4778899999888888776432 4478999999999999999999987665 67899999999988777889999
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+.+| |+|... ...+.++.+.+++||||||+.+++++|..|+++++++.+...++......+++||++||........
T Consensus 76 ~~~g~~tg~~~--~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~ 153 (304)
T 1ojl_A 76 HEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVS 153 (304)
T ss_dssp CCSSCCC---C--CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHH
T ss_pred ccccccCchhh--hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHH
Confidence 8776 665433 2345667778899999999999999999999999999988776665556788999999965443221
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccce-eeeccCC--HHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEI-VYFLPFS--KSELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~i-v~f~pl~--~~~~~~i~~~ 504 (607)
.+.|+ ++|++|++.+ +.+.||+ .+|+..++..
T Consensus 154 --------------------------------------------~g~fr-~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 154 --------------------------------------------AGRFR-QDLYYRLNVVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp --------------------------------------------HTSSC-HHHHHHHSSEEEECCCSGGGGGGHHHHHHH
T ss_pred --------------------------------------------hCCcH-HHHHhhcCeeEEeccCHHHhHhhHHHHHHH
Confidence 34576 9999999765 5667776 6899999999
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
++..+..+... -...+++++++.|.. |+|++|+|+|++.+++.+.
T Consensus 189 ~l~~~~~~~~~---~~~~~s~~a~~~L~~-~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 189 FLRRFAERNRK---VVKGFTPQAMDLLIH-YDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HHHHHHHHTTC---CCCCBCHHHHHHHHH-CCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---CccCCCHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 99877665432 135689999999986 9999999999999998765
No 92
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=5e-27 Score=242.40 Aligned_cols=171 Identities=12% Similarity=0.014 Sum_probs=133.3
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFI 106 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll 106 (607)
+..++||||+||+.|+.+++++|+..+..... ....+..|.||||+||..|+.++|++|+
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~--------------------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll 148 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEI--------------------VKVIQAENYQAFRLAAENGHLHVLNRLC 148 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS--------------------CC--CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH--------------------HHHhccCCCCHHHHHHHcCCHHHHHHHH
Confidence 45567999999999999999999987652111 0123345678999999999999999999
Q ss_pred hcCCCCC---ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--CC--CCchHHHHH-HcCCccHHHHHHhcCCCcc
Q psy1308 107 ENSKLDV---NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL--GD--LFNTVHRTA-AEKKMNPFEVLLKREDEFN 178 (607)
Q Consensus 107 ~~~~~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~--~d--~~~~l~~A~-~~~~~~~~~~Ll~~g~~~~ 178 (607)
++| +++ +..+.+ +||||+||..|+.++|++|+++|++++. .| ++||||+|+ ..|+.+++++|+++|++
T Consensus 149 ~~g-ad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-- 224 (376)
T 2aja_A 149 ELA-PTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-- 224 (376)
T ss_dssp HSC-TTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--
T ss_pred hCC-CCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--
Confidence 998 652 333333 8999999999999999999999999765 44 467999999 99999999999997642
Q ss_pred ccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHH
Q psy1308 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIK 235 (607)
Q Consensus 179 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~ 235 (607)
|.||||+|+.+|+.+++++|+++|++++..+. +++.|+..|+.
T Consensus 225 ----------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~----~l~~A~~~g~~ 267 (376)
T 2aja_A 225 ----------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDGVF 267 (376)
T ss_dssp ----------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT----TTTTTSSSSCC
T ss_pred ----------cchHHHHHHHCCCHHHHHHHHhcCcccccccH----HHHHHHHCCCh
Confidence 88999999999999999999999988766542 45555544433
No 93
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=5.9e-24 Score=184.22 Aligned_cols=124 Identities=36% Similarity=0.478 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcC
Q psy1308 85 IKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEK 162 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~ 162 (607)
+|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|+++|++++.+|. +||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence 5889999999999999999999998 89999999999999999999999999999999999887654 45777777777
Q ss_pred CccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 163 KMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 163 ~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|||
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~-----~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDK-----NGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHcCCCCcccCC-----CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 77777777777776665433 377777777777777777777777765
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=2e-24 Score=190.69 Aligned_cols=125 Identities=29% Similarity=0.470 Sum_probs=81.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchh
Q psy1308 116 RHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSAL 193 (607)
Q Consensus 116 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpL 193 (607)
+|..|+||||+|+..|+.+++++|+++|++++..|. +||||+|+..|+.+++++|+++|++++.. |..|+|||
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-----~~~g~t~L 80 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-----GYQNDSPL 80 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-----CGGGCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-----CCCCCCHH
Confidence 344444444444444444444444444444444332 33444444444444444444444444433 33499999
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 194 HYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 194 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
|+|+..|+.+++++|+++|++++.+|..|+||+|+|+..+..+++.++.+..
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999998776554
No 95
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=1.7e-23 Score=225.79 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccC------CCCCCcHHHHHHH---cCCHHHHHHHHHcCCCCCCCCC--C
Q psy1308 84 SIKDLTLFRAARYGSAKELKTFIENSKLDVNMR------HPLGWTPLHVAAI---NGKVDNVRVLLEAGANPNLGDL--F 152 (607)
Q Consensus 84 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~~v~~Ll~~ga~~~~~d~--~ 152 (607)
....+.||.|+..|+.+.|+.||+.| +++|.+ |..|+||||+||. .|+.++|++|+++|+++|.+|. +
T Consensus 130 ~~~~~~L~~A~~~g~~~~v~~ll~~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~ 208 (497)
T 3lvq_E 130 TPEPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 208 (497)
T ss_dssp C-CHHHHHHHHHHTCHHHHHHHHHTT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSC
T ss_pred cccHHHHHHHHhccCHHHHHHHHhhc-ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCC
Confidence 34458899999999999999999999 999988 8899999999977 8999999999999999999775 6
Q ss_pred chHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhh
Q psy1308 153 NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED 231 (607)
Q Consensus 153 ~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~ 231 (607)
||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|++++. ||+|.+..
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-----g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEA-----GETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTT-----CCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-----CCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 7999999999999999999999999987554 99999999999999999999999999887 56666543
No 96
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=4.4e-26 Score=235.33 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=133.8
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCC---CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCC
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLD---VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN-----PNLGDLF 152 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~ 152 (607)
..+.++.||||+||..|+.++|++|++++ +. .+..+..|.||||+||..|+.++|++|+++|++ ++..+ +
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~g-a~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~ 164 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGCSSALDTLCLLL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y 164 (376)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred HcCCCcCCHHHHHHHcCCHHHHHHHHHcC-CcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence 44556679999999999999999999998 42 223455688999999999999999999999975 44445 7
Q ss_pred chHHHHHHcCCccHHHHHHhcCCCccc--cCCCCcCcCCcchhhHHH-hcCCHHHHHHHHhcCCCCCccCCCCCCCCcch
Q psy1308 153 NTVHRTAAEKKMNPFEVLLKREDEFND--VLNPNMTFLGFSALHYGV-VAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229 (607)
Q Consensus 153 ~~l~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~~~d~~g~TpLh~A~-~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A 229 (607)
||||+|+..|+.+++++|+++|++++. . |..|+||||+|+ ..|+.++|++|+++|++ |.||||+|
T Consensus 165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~-----d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~A 232 (376)
T 2aja_A 165 HAFRLAAENGHLHVLNRLCELAPTEATAMI-----QAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHE 232 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGGGHHHHH-----HHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCccchhcc-----CCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHH
Confidence 899999999999999999999999765 4 334999999999 99999999999998853 89999999
Q ss_pred hhhhHHHHHHHHHHhhhhHHh
Q psy1308 230 EDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 230 ~~~~~~~~~~~ll~~~~~~~~ 250 (607)
+..|+.+++++|++.+++...
T Consensus 233 a~~g~~evv~lL~~~ga~~~~ 253 (376)
T 2aja_A 233 FEYGEKYVNPFIARHVNRLKE 253 (376)
T ss_dssp TTTTTTTHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCccccc
Confidence 999999999999999988653
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=1.7e-25 Score=218.22 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=128.6
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---CCchHHH
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD---LFNTVHR 157 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d---~~~~l~~ 157 (607)
..+..|.||||+||..|+.++|++|++ + +++|.+|..|+||||+||..|+.++|++|+++|++++..+ ++||||+
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 40 DVVSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 344678999999999999999999999 6 8999999999999999999999999999999999999877 5789999
Q ss_pred HHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHH
Q psy1308 158 TAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237 (607)
Q Consensus 158 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~ 237 (607)
|+..|+.+++++|+++|++++..+.. |+||||+|+..++ +..+.||||+|+..|+.++
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~~~~d~~-----g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~i 175 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADIEVEDER-----GLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKV 175 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTT-----CCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCC-----CCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHH
Confidence 99999999999999999999877544 9999999986322 2568999999999999999
Q ss_pred HHHHHHhhhh
Q psy1308 238 LQKYAEKYAD 247 (607)
Q Consensus 238 ~~~ll~~~~~ 247 (607)
+++|++.+.+
T Consensus 176 v~~L~~~~~~ 185 (244)
T 3ui2_A 176 INVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHEE
T ss_pred HHHHHHhccc
Confidence 9999887543
No 98
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=6.6e-24 Score=187.14 Aligned_cols=125 Identities=33% Similarity=0.445 Sum_probs=92.2
Q ss_pred cCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHH
Q psy1308 82 CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTA 159 (607)
Q Consensus 82 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~ 159 (607)
....+.||||+||..|+.+++++|++++ +++|.+|..|+||||+||..|+.+++++|+++|++++..|. +||||+|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 4456789999999999999999999998 89999999999999999999999999999999999887654 34566666
Q ss_pred HcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcC
Q psy1308 160 AEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212 (607)
Q Consensus 160 ~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 212 (607)
..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~~~~-----~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNAQDK-----FGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCcCcCC-----CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 55555555655555555554422 2555666655555555555555544
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=5.3e-24 Score=184.23 Aligned_cols=119 Identities=33% Similarity=0.429 Sum_probs=103.4
Q ss_pred CCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcC
Q psy1308 83 QSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEK 162 (607)
Q Consensus 83 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~ 162 (607)
+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+||..|+.+++++|+++|++++.+|.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~----------- 71 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----------- 71 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-----------
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----------
Confidence 467889999999999999999999988 88999999999999999999999999999988888876542
Q ss_pred CccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHH
Q psy1308 163 KMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQIL 238 (607)
Q Consensus 163 ~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~ 238 (607)
.|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|...+..+++
T Consensus 72 -------------------------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll 122 (123)
T 3aaa_C 72 -------------------------HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122 (123)
T ss_dssp -------------------------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred -------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence 389999999999999999999999999999999999999999888777765
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=210.10 Aligned_cols=198 Identities=15% Similarity=0.097 Sum_probs=147.7
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcc----ccc--ccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcC
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIR----QSN--NTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYG 97 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~----~~~--~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g 97 (607)
..-+.+..+.+..+.+.|+..+-+++....... +.. .......+..+.+... ........+.++||.|+..|
T Consensus 85 l~lD~w~~~~l~~~~~~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~--~f~~~~~~~~~~L~~A~~~g 162 (301)
T 2b0o_E 85 LTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEH--RFARRCTPEPQRLWTAICNR 162 (301)
T ss_dssp TTTSCCCHHHHHHHHHCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSC--TTSCCCC-CHHHHHHHHHTT
T ss_pred cCcCCCCHHHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhh--hhhcccCchHHHHhhhhhcc
Confidence 445667788899999999987666654322111 110 0001111111222211 11223344568899999999
Q ss_pred CHHHHHHHHhcCCCCCcc------CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccH
Q psy1308 98 SAKELKTFIENSKLDVNM------RHPLGWTPLHVAAIN---GKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNP 166 (607)
Q Consensus 98 ~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~ 166 (607)
+.+.|+.|++.+ ++++. .+..|+||||+|+.. |+.+++++|+++|+++|.+|. +||||+|+..|+.++
T Consensus 163 ~~~~v~~ll~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~ 241 (301)
T 2b0o_E 163 DLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241 (301)
T ss_dssp CHHHHHHHHHTT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHhcC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 999999999998 89998 689999999999997 899999999999999998765 679999999999999
Q ss_pred HHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHH
Q psy1308 167 FEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIK 235 (607)
Q Consensus 167 ~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~ 235 (607)
+++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 242 v~~Ll~~gad~~~~d~-----~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 242 LKLLLKGRALVGTVNE-----AGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHTTCCCSCCCT-----TSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 9999999999987754 499999999999999999999999987 589999999988764
No 101
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=1.9e-24 Score=195.52 Aligned_cols=141 Identities=24% Similarity=0.267 Sum_probs=115.9
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCc
Q psy1308 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGF 190 (607)
Q Consensus 113 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~ 190 (607)
.+..+..|.||||+|+..|+.+++++|+++|++++..+. +||||+|+ .|+.+++++|+++|++++..+.. |+
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~-----g~ 78 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA-----TL 78 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT-----TC
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCC-----CC
Confidence 455678899999999999999999999999999998765 67999985 99999999999999999887544 99
Q ss_pred c-hhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHhhHHHhhcccccH
Q psy1308 191 S-ALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPL 262 (607)
Q Consensus 191 T-pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L 262 (607)
| |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++.... +..+.++.
T Consensus 79 ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~---~~~g~t~~ 148 (156)
T 1bi7_B 79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS---NHARIDAA 148 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc---CcCcCccc
Confidence 9 999999999999999999999999999999999999999999999999999999987643 34444443
No 102
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=6.1e-24 Score=187.35 Aligned_cols=125 Identities=29% Similarity=0.367 Sum_probs=115.3
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchh
Q psy1308 116 RHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSAL 193 (607)
Q Consensus 116 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpL 193 (607)
....|.||||+|+..|+.+++++|+++|++++..|. +||||+|+..++.+++++|+++|++++..+. .|+|||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~t~L 84 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-----IGFTPL 84 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TCCCHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----CCCCHH
Confidence 345688999999999999999999999999998765 6799999999999999999999999987754 499999
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhh
Q psy1308 194 HYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKY 245 (607)
Q Consensus 194 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~ 245 (607)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999998764
No 103
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=5.6e-24 Score=197.88 Aligned_cols=140 Identities=21% Similarity=0.247 Sum_probs=124.1
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---CCchHHH
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD---LFNTVHR 157 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d---~~~~l~~ 157 (607)
..+..|.||||+||..|+.+++++|++ + +++|.+|..|+||||+|+..|+.+++++|+++|++++..+ ++||||+
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 446788999999999999999999999 6 8999999999999999999999999999999999999876 4679999
Q ss_pred HHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHH
Q psy1308 158 TAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237 (607)
Q Consensus 158 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~ 237 (607)
|+..|+.+++++|+++|++++..+. .|+||||+|+..++. ..+.|||++|+..|+.++
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~-----~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i 174 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDE-----RGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKV 174 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCT-----TSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCC-----CCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHH
Confidence 9999999999999999999887644 499999999875432 456899999999999999
Q ss_pred HHHHHHh
Q psy1308 238 LQKYAEK 244 (607)
Q Consensus 238 ~~~ll~~ 244 (607)
+++|.++
T Consensus 175 ~~~L~~~ 181 (183)
T 3deo_A 175 INVLEGQ 181 (183)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9988654
No 104
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=2e-23 Score=180.80 Aligned_cols=124 Identities=35% Similarity=0.468 Sum_probs=116.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHH
Q psy1308 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYG 196 (607)
Q Consensus 119 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A 196 (607)
+|+||||+|+..|+.+++++|+++|++++..+. +||||+|+..++.+++++|+++|++++..+. .|+||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-----NGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC-----CCCcHHHHH
Confidence 589999999999999999999999999998764 6799999999999999999999999887644 499999999
Q ss_pred HhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhh
Q psy1308 197 VVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247 (607)
Q Consensus 197 ~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~ 247 (607)
+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++
T Consensus 76 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 76 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999998864
No 105
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.89 E-value=1.5e-22 Score=199.83 Aligned_cols=226 Identities=19% Similarity=0.278 Sum_probs=169.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++.++..+...+...... +.+++++|++|+|||.+++.++..+... ..+|+.++|+.+........++|
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~------~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~g 79 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPL------DKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLNCAALNENLLDSELFG 79 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTS------CSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEEGGGSCHHHHHHHHHC
T ss_pred cceeCCHHHHHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEecCCCChhHHHHHhcC
Confidence 4789999998888777765432 3478999999999999999999987654 57899999999977666678888
Q ss_pred CCCC-CccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 349 APPG-YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 349 ~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
...| |.|.... ..+.+..+.+++||||||+++++++|..|+++++++.+.+.++......++++|+|||.......+
T Consensus 80 ~~~~~~~g~~~~--~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~ 157 (265)
T 2bjv_A 80 HEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVN 157 (265)
T ss_dssp CC---------C--CCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHH
T ss_pred Cccccccccccc--ccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHH
Confidence 7665 5553221 235566777899999999999999999999999999888766655556788999999966544321
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccc-eeeeccCCH--HHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE-IVYFLPFSK--SELHTLVCR 504 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~-iv~f~pl~~--~~~~~i~~~ 504 (607)
.+.|+ ++|++|++. .+.+.|++. +++..++..
T Consensus 158 --------------------------------------------~~~~~-~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~ 192 (265)
T 2bjv_A 158 --------------------------------------------EGTFR-ADLLDALAFDVVQLPPLRERESDIMLMAEY 192 (265)
T ss_dssp --------------------------------------------HTSSC-HHHHHHHCSEEEECCCGGGCHHHHHHHHHH
T ss_pred --------------------------------------------cCCcc-HHHHHhhcCcEEeCCChhhhhHHHHHHHHH
Confidence 23466 999999975 466667754 789999998
Q ss_pred HHHHHHHHHhhcCCcE--EEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNIN--IVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~--l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
++..+.++. +.. ..++++++++|.. |+|++|+|+|++.+++.+.
T Consensus 193 ~l~~~~~~~----~~~~~~~~~~~a~~~L~~-~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 193 FAIQMCREI----KLPLFPGFTERARETLLN-YRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HHHHHHHHT----TCSSCCCBCHHHHHHHHH-SCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----CCCcccCcCHHHHHHHHh-CCCCCCHHHHHHHHHHHHH
Confidence 888766543 332 3689999999986 9999999999999998654
No 106
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.89 E-value=2.1e-22 Score=209.27 Aligned_cols=285 Identities=21% Similarity=0.292 Sum_probs=177.7
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHH----HhhCCC------------------CCCCCCceeeeeccCCCChhHHHHHHH
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIK----RKENGW------------------TDDDHPLVFLFLGSSGIGKTELAKQLA 318 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~----~~~~~~------------------~~~~~p~~~ll~G~~G~GKt~la~~la 318 (607)
.+...+.+.++||+.+++.+..++. +...+. .....+.+++|+||+|+|||.+|+.++
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHH
Confidence 4667777889999999999988772 222111 001123379999999999999999999
Q ss_pred HHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHH-------hhCCCeEEEEecCCccCHH------
Q psy1308 319 FYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL-------KKCPNAVVLFDEVDKAHPD------ 385 (607)
Q Consensus 319 ~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~-------~~~~~~vl~lDEiek~~~~------ 385 (607)
+.+. .+|+.++++.+.. .+|.|....+.+...+ ..++++|+|||||+++++.
T Consensus 94 ~~l~----~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~ 158 (376)
T 1um8_A 94 KHLD----IPIAISDATSLTE-----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSI 158 (376)
T ss_dssp HHTT----CCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------
T ss_pred HHhC----CCEEEecchhhhh-----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCce
Confidence 9873 4699999887643 2444544444444443 3446899999999999998
Q ss_pred --------HHHHHHHhhcccee--ecCCCcE--------EecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcc
Q psy1308 386 --------VLTVLLQLFDEGRL--TDGKGKT--------IECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSIS 447 (607)
Q Consensus 386 --------~~~~Ll~~~~~~~~--~~~~g~~--------~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 447 (607)
+|+.|+++++++.+ .+.+|.. +..+|++||+++|... +..... .+ +....+...
T Consensus 159 ~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~--l~~~l~-~R-----~~~~~~g~~ 230 (376)
T 1um8_A 159 TRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDG--LAEIIK-KR-----TTQNVLGFT 230 (376)
T ss_dssp -----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTT--HHHHTT-TS-----CSSCCCSCC
T ss_pred ecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHH--HHHHHH-HH-----hcccccCCC
Confidence 99999999997753 4444443 4557777887777422 211110 00 000000000
Q ss_pred cccCCCcchhcchhhhhhhhhHHH-HhccCChhhhccccceeeeccCCHHHHHHHHHH----HHHHHHHHHhhcCCcEEE
Q psy1308 448 KSQGSNLDVTISRHFKDHVVQPIL-KRHFRRDEFLGRINEIVYFLPFSKSELHTLVCR----ELNFWAKKALDKHNINIV 522 (607)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~----~l~~~~~~~~~~~~i~l~ 522 (607)
.+... ......+........+ ...|+ |+|++|++.++.|.||+.+++..|+.. .+..+.+++.. .+..+.
T Consensus 231 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~-p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 305 (376)
T 1um8_A 231 QEKMS---KKEQEAILHLVQTHDLVTYGLI-PELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKM-DEVDLI 305 (376)
T ss_dssp CSSCC---TTTTTTSGGGCCHHHHHHTTCC-HHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHT-TTCEEE
T ss_pred chhhh---ccchhHHHhhcCHHHHhhcCCC-hHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhh-cCceEE
Confidence 00000 0000111122222233 34576 999999999999999999999999984 55555555433 477899
Q ss_pred eCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEEEEEec
Q psy1308 523 WDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQW 577 (607)
Q Consensus 523 ~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~ 577 (607)
++++++++|+. +|.+.+|+|+|++.+++.+.+++++.... .+..+.|+.+.
T Consensus 306 ~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~----~~~~~~i~~~~ 357 (376)
T 1um8_A 306 FEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL----KGSEVRITKDC 357 (376)
T ss_dssp ECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG----TTSEEEECHHH
T ss_pred ECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC----CCCEEEEeHHH
Confidence 99999999987 56677999999999999999988765422 34556665443
No 107
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.2e-23 Score=201.98 Aligned_cols=134 Identities=28% Similarity=0.296 Sum_probs=107.2
Q ss_pred hccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCchHHHH
Q psy1308 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANPNLGDLFNTVHRT 158 (607)
Q Consensus 80 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~~~l~~A 158 (607)
...+..|.||||+||..|+.++|++|++.+ +++|.+|..|+||||+||..|+.++|++|+++ |++++.+|.
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~------- 138 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK------- 138 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT-------
T ss_pred cccccccccccccccccCcHHHHHHHHhCC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC-------
Confidence 456778899999999999999999999988 99999999999999999999999999999988 888887653
Q ss_pred HHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHH
Q psy1308 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQIL 238 (607)
Q Consensus 159 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~ 238 (607)
.|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++
T Consensus 139 -----------------------------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l 189 (222)
T 3ehr_A 139 -----------------------------LGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLL 189 (222)
T ss_dssp -----------------------------TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHH
T ss_pred -----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHH
Confidence 278888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhhhHHh
Q psy1308 239 QKYAEKYADLQR 250 (607)
Q Consensus 239 ~~ll~~~~~~~~ 250 (607)
+.|+..++....
T Consensus 190 ~~l~~~~~~~~~ 201 (222)
T 3ehr_A 190 KKKQGTDAVRTL 201 (222)
T ss_dssp C-----------
T ss_pred HHHhccchhhhc
Confidence 888887776554
No 108
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=2.6e-23 Score=183.51 Aligned_cols=128 Identities=23% Similarity=0.287 Sum_probs=115.1
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHH
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRT 158 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A 158 (607)
..|..|.||||+||..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|. +||||+|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHH
Confidence 56889999999999999999999999998 99999999999999999999999999999999999999875 6799999
Q ss_pred HHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 159 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
+..|+.+++++|+++|++++..+. .|.||||+|+..++.+++++|.+.+..
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~-----~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNI-----FGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCT-----TSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHhhccHHHHHhhccccccC
Confidence 999999999999999999987754 499999999999999999888776543
No 109
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2e-22 Score=196.49 Aligned_cols=142 Identities=19% Similarity=0.154 Sum_probs=124.9
Q ss_pred CCcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHH
Q psy1308 26 KRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTF 105 (607)
Q Consensus 26 ~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L 105 (607)
.+..|.||||+||..|+.+++++|+. +... +..|..|.||||+||..|+.++|++|
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-----------------------~~~d~~g~t~L~~A~~~g~~~~v~~L 96 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE-DRDV-----------------------DAVDENGRTALLFVAGLGSDKCVRLL 96 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-----------------------TCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-----------------------CCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 34578999999999999999999987 4322 36778999999999999999999999
Q ss_pred HhcCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCC
Q psy1308 106 IENSKLDVNMRH-PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLN 182 (607)
Q Consensus 106 l~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 182 (607)
+++| +++|.++ ..|+||||+|+..|+.++|++|+++|++++.+|. +||||+|+..++.
T Consensus 97 l~~g-a~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~------------------ 157 (244)
T 3ui2_A 97 AEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------ 157 (244)
T ss_dssp HHTT-CCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT------------------
T ss_pred HHcC-CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc------------------
Confidence 9998 9999998 8899999999999999999999999999998775 6799999864321
Q ss_pred CCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 183 PNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 183 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
..+.||||+|+..|+.+++++|++++.+
T Consensus 158 ----~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 158 ----TPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ----CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ----cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 1289999999999999999999987544
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=2.3e-21 Score=192.55 Aligned_cols=185 Identities=15% Similarity=0.097 Sum_probs=134.0
Q ss_pred CCCCcCCchHHHHHHhcCChhHHHHHhcCCCcccc----cccccCChH--HHHHHccCcc--chhccCCCCCHHHHHHHH
Q psy1308 24 PYKRGFQSSKLFYTTQSTQADFKSCLSVFPKIRQS----NNTCMYNNL--LFASACSLAL--TLLECQSIKDLTLFRAAR 95 (607)
Q Consensus 24 ~~~~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~----~~~~~~~~l--~~a~~~~~~~--~~~~~~~~g~t~Lh~A~~ 95 (607)
..-+.++.++|+.+...||..+.+++......... ...+..... ..+....... ..........++|+.|+.
T Consensus 60 ~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~ 139 (278)
T 1dcq_A 60 LTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVK 139 (278)
T ss_dssp TTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhh
Confidence 34577899999999999999888887654322111 111110001 1111111111 011111223578999999
Q ss_pred cCCHHHHHHHHhcCCCC------CccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCc
Q psy1308 96 YGSAKELKTFIENSKLD------VNMRHPLGWTPLHVAAIN---GKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKM 164 (607)
Q Consensus 96 ~g~~~~v~~Ll~~~~~~------~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~ 164 (607)
.|+.+.++.+++.| ++ ++..|..|+||||+|+.. |+.+++++|+++|+++|.+|. +||||+|+..|+.
T Consensus 140 ~~d~~~~~~ll~~g-~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~ 218 (278)
T 1dcq_A 140 TRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218 (278)
T ss_dssp TTCHHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hcccHHHHHHHHhh-cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence 99999999999998 77 445588899999999999 899999999999999998764 6688888888888
Q ss_pred cHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 165 NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 165 ~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|++
T Consensus 219 ~~v~~Ll~~gad~~~~d~~-----g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 219 ECLKLLLRGKASIEIANES-----GETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHHHTTCCTTCCCTT-----SCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCccCC-----CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 8888888888888776443 88888888888888888888888774
No 111
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=5.9e-22 Score=184.14 Aligned_cols=138 Identities=20% Similarity=0.178 Sum_probs=122.9
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFI 106 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll 106 (607)
+..|.||||+||..|+.+++++|+. +.. ++..|..|.||||+|+..|+.+++++|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 96 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD-----------------------VDAVDENGRTALLFVAGLGSDKCVRLLA 96 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-----------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-----------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 5578999999999999999999987 432 2456889999999999999999999999
Q ss_pred hcCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCC
Q psy1308 107 ENSKLDVNMRH-PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNP 183 (607)
Q Consensus 107 ~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 183 (607)
+++ +++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|. +||||+|+..++.
T Consensus 97 ~~g-a~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------- 156 (183)
T 3deo_A 97 EAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------- 156 (183)
T ss_dssp HTT-CCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------------
T ss_pred HcC-CCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------------
Confidence 998 9999998 8899999999999999999999999999998775 6799999985432
Q ss_pred CcCcCCcchhhHHHhcCCHHHHHHHHhc
Q psy1308 184 NMTFLGFSALHYGVVAGNTEVVELLLKS 211 (607)
Q Consensus 184 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 211 (607)
..+.|||++|+..|+.+++++|.++
T Consensus 157 ---~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 ---TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ---CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---cccccHHHHHHHcCHHHHHHHHHHh
Confidence 1278999999999999999999865
No 112
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=3.4e-22 Score=191.82 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=108.8
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFI 106 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll 106 (607)
+..|.||||+||..|+.+++++|+..+... +..|..|.||||+||..|+.++|++|+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll 126 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-----------------------NGLDKAGSTALYWACHGGHKDIVEMLF 126 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHT
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCc-----------------------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 456899999999999999999998775432 356788999999999999999999999
Q ss_pred hcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcC
Q psy1308 107 ENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMT 186 (607)
Q Consensus 107 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d 186 (607)
+.+++++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 127 ~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~----------------------------------- 171 (222)
T 3ehr_A 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI----------------------------------- 171 (222)
T ss_dssp TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT-----------------------------------
T ss_pred cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-----------------------------------
Confidence 994499999999999999999999999999999999999987653
Q ss_pred cCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCC
Q psy1308 187 FLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSG 222 (607)
Q Consensus 187 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g 222 (607)
.|+||||+|+..|+.++++.|++.|++.+..|..|
T Consensus 172 -~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 172 -EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp -TSCCHHHHCCSHHHHHHHC----------------
T ss_pred -CCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 28999999999999999999999999888877665
No 113
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=195.41 Aligned_cols=144 Identities=15% Similarity=0.033 Sum_probs=119.9
Q ss_pred CchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHc---CCHHHHHHHH
Q psy1308 30 QSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARY---GSAKELKTFI 106 (607)
Q Consensus 30 g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll 106 (607)
..++||.|+..|+.+.+..|+..+........ ....+..|.||||+|+.. |+.+++++|+
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~-----------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll 213 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLP-----------------GPDAQAPEELVLHLAVKVANQASLPLVDFII 213 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE-----------------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCC-----------------CcccCCCCccHHHHHHHhcccCcHHHHHHHH
Confidence 45789999999999999999887655432100 012578899999999997 8999999999
Q ss_pred hcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHHHcCCccHHHHHHhcCCCccccCCCC
Q psy1308 107 ENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPN 184 (607)
Q Consensus 107 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 184 (607)
++| +++|.+|..|+||||+|+..|+.++|++|+++|++++.+|. +||||+|+..++.+++++|+++|++
T Consensus 214 ~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------- 284 (301)
T 2b0o_E 214 QNG-GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------- 284 (301)
T ss_dssp HHS-SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------
T ss_pred hcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------
Confidence 998 99999999999999999999999999999999999999875 6799999999999999999999876
Q ss_pred cCcCCcchhhHHHhcCCH
Q psy1308 185 MTFLGFSALHYGVVAGNT 202 (607)
Q Consensus 185 ~d~~g~TpLh~A~~~g~~ 202 (607)
.|.||||+|+.+|+.
T Consensus 285 ---~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 ---TFAFPLHVDYSWVIS 299 (301)
T ss_dssp ---TTSSCCC--------
T ss_pred ---CCCChhHHHHhcCCc
Confidence 189999999998874
No 114
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.9e-21 Score=168.11 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=90.2
Q ss_pred CcCCchHHHHHHhcCChhHHHHHhcCCCcccccccccCChHHHHHHccCccchhccCCCCCHHHHHHHHcCCHHHHHHHH
Q psy1308 27 RGFQSSKLFYTTQSTQADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFI 106 (607)
Q Consensus 27 ~~~g~t~L~~A~~~g~~~~v~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll 106 (607)
++.|.||||+|+..|+.+++++|+..+... +..+..|+||||+||..|+.+++++|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll 60 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-----------------------NRTLEGGRKPLHYAADCGQLEILEFLL 60 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-----------------------TSCCTTSSCHHHHHHHTTCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-----------------------CccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 467899999999999999999998876432 356788999999999999999999999
Q ss_pred hcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy1308 107 ENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL 151 (607)
Q Consensus 107 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 151 (607)
+.+ +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 61 ~~g-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 104 (123)
T 3aaa_C 61 LKG-ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 104 (123)
T ss_dssp TTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred HcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 998 99999999999999999999999999999999999987654
No 115
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=8.8e-21 Score=155.08 Aligned_cols=93 Identities=43% Similarity=0.566 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCc
Q psy1308 85 IKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKM 164 (607)
Q Consensus 85 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~ 164 (607)
+|+||||+|+..|+.+++++|++.+ +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~------------- 66 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK------------- 66 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-------------
Confidence 4788888888888888888888887 88888888888888888888888888888888888776543
Q ss_pred cHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCC
Q psy1308 165 NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214 (607)
Q Consensus 165 ~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad 214 (607)
.|+||||+|+..|+.+++++|+++||+
T Consensus 67 -----------------------~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 67 -----------------------NGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp -----------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -----------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 277888888888888888888887775
No 116
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=6.2e-21 Score=196.07 Aligned_cols=141 Identities=23% Similarity=0.220 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHc-CCHHHHHHHHhcCCCCCccCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--CchHHHHH
Q psy1308 85 IKDLTLFRAARY-GSAKELKTFIENSKLDVNMRH--PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL--FNTVHRTA 159 (607)
Q Consensus 85 ~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--~~~l~~A~ 159 (607)
.+.|+||.|+.. |+.+++++|+++| +++|..+ ..|+||||+|+..|+.++|++|+++|+++|..|. +||||+|+
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHG-ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcC-CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 346788888888 8888888888887 8888887 7788888888888888888888888888887664 56888888
Q ss_pred HcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcC---CCCCccCCCCCCCCcchhh
Q psy1308 160 AEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG---ADPTVKDNSGHIPSDYAED 231 (607)
Q Consensus 160 ~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~g~Tpl~~A~~ 231 (607)
..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+..| ++....+..+.|+++++..
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~-----G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSE-----GRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTT-----SCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCC-----CCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 888888888888888877766443 788888888888888888887655 4444555667777776554
No 117
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.83 E-value=1e-19 Score=188.48 Aligned_cols=164 Identities=19% Similarity=0.295 Sum_probs=120.0
Q ss_pred HhhC-CCeEEEEecCCccCHH------------HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhh
Q psy1308 366 LKKC-PNAVVLFDEVDKAHPD------------VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQL 432 (607)
Q Consensus 366 ~~~~-~~~vl~lDEiek~~~~------------~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~ 432 (607)
++++ +++++++|||||+... +|+.||+++|...... +-..++.++++||+|+.....
T Consensus 245 i~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~~~~d~~~ilfI~~gaf~~~--------- 314 (444)
T 1g41_A 245 IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHGMVKTDHILFIASGAFQVA--------- 314 (444)
T ss_dssp HHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTEEEECTTCEEEEEECCSSC---------
T ss_pred HHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-ccceecCCcEEEEeccccccC---------
Confidence 3444 6789999999998643 8999999999765554 335789999999999752200
Q ss_pred hhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHH---HHHHHH
Q psy1308 433 RKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVC---RELNFW 509 (607)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~---~~l~~~ 509 (607)
.+ ..+. |+|.+||+.++.|.||+.+++.+|+. ..+..-
T Consensus 315 ------------------~~--------------------~dli-pel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q 355 (444)
T 1g41_A 315 ------------------RP--------------------SDLI-PELQGRLPIRVELTALSAADFERILTEPHASLTEQ 355 (444)
T ss_dssp ------------------CG--------------------GGSC-HHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHH
T ss_pred ------------------Ch--------------------hhcc-hHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHH
Confidence 00 0133 99999999999999999999999994 333332
Q ss_pred HHHHhhcCCcEEEeCHhHHHHHHc-c-----CCCCCCccchhHHHHHHHHHHHHHHHHhccCCCCCEEEEEEecCCccc
Q psy1308 510 AKKALDKHNINIVWDIDVETILAD-G-----YDVHYGARSIKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVS 582 (607)
Q Consensus 510 ~~~~~~~~~i~l~~~~~a~~~L~~-~-----~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~~~~~~ 582 (607)
...+....++.+.++++|++.|++ + |....|||.|++.|++.+.+...+.- .. .+..++|+.+.-..++
T Consensus 356 ~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~-~~---~~~~~~i~~~~v~~~l 430 (444)
T 1g41_A 356 YKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS-DM---NGQTVNIDAAYVADAL 430 (444)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGG-GC---TTCEEEECHHHHHHHH
T ss_pred HHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcc-cc---CCCeEEEeHHHHHHhc
Confidence 333344569999999999999985 3 45889999999999998888765542 21 3467777665544433
No 118
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=5.3e-21 Score=163.05 Aligned_cols=108 Identities=33% Similarity=0.417 Sum_probs=79.6
Q ss_pred cCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHc
Q psy1308 82 CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAE 161 (607)
Q Consensus 82 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~ 161 (607)
.|.+|.||||+||..|+.+++++|++++ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d----------- 72 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS----------- 72 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCC-----------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccC-----------
Confidence 4566667777777777777777777666 6666666667777777776666666666666666665443
Q ss_pred CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCC
Q psy1308 162 KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPS 226 (607)
Q Consensus 162 ~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl 226 (607)
..|+||||+|+..|+.+++++|+++|+|++.++..|.||-
T Consensus 73 -------------------------~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 73 -------------------------KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp -------------------------TTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred -------------------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 2389999999999999999999999999999999998874
No 119
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=4.6e-20 Score=186.40 Aligned_cols=252 Identities=20% Similarity=0.359 Sum_probs=181.4
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhC--CCC----CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKEN--GWT----DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~--~~~----~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
.+...+...++||+.+++.+...+..... +.. ....|.+++|+||+|+|||.+++.+++.+. .+++.+++
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~----~~~~~i~~ 83 (310)
T 1ofh_A 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN----APFIKVEA 83 (310)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT----CCEEEEEG
T ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEcc
Confidence 45667778899999999999888876311 111 012345799999999999999999999884 35899999
Q ss_pred ccccccchhHhhhcCCCCCccCCCCchhhHHHhhC--------CCeEEEEecCCccCHHH------------HHHHHHhh
Q psy1308 335 SEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC--------PNAVVLFDEVDKAHPDV------------LTVLLQLF 394 (607)
Q Consensus 335 a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~--------~~~vl~lDEiek~~~~~------------~~~Ll~~~ 394 (607)
+.+... +|+|.+....+...+... +++||||||+++++++. ++.|++++
T Consensus 84 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 84 TKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp GGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence 876532 455544444444433322 36899999999998765 99999999
Q ss_pred ccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhc
Q psy1308 395 DEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRH 474 (607)
Q Consensus 395 ~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 474 (607)
+++.+....| .....+++||++++..... ...
T Consensus 153 e~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-----------------------------------------------~~~ 184 (310)
T 1ofh_A 153 EGSTVSTKHG-MVKTDHILFIASGAFQVAR-----------------------------------------------PSD 184 (310)
T ss_dssp HCCEEEETTE-EEECTTCEEEEEECCSSSC-----------------------------------------------GGG
T ss_pred cCCeEecccc-cccCCcEEEEEcCCcccCC-----------------------------------------------ccc
Confidence 9887766555 4567889999997632100 012
Q ss_pred cCChhhhccccceeeeccCCHHHHHHHHH----HHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCC-------CCCccc
Q psy1308 475 FRRDEFLGRINEIVYFLPFSKSELHTLVC----RELNFWAKKALDKHNINIVWDIDVETILADGYDV-------HYGARS 543 (607)
Q Consensus 475 f~~~el~~ri~~iv~f~pl~~~~~~~i~~----~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~-------~~GaR~ 543 (607)
+. |+|++|++.++.|.|++.+++.+|+. .++..+.+.+.. .+..+.++++++++|++ +.| .+|+|.
T Consensus 185 l~-~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~l~~-~~~~~~~~~~~g~~R~ 261 (310)
T 1ofh_A 185 LI-PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT-EGVNIAFTTDAVKKIAE-AAFRVNEKTENIGARR 261 (310)
T ss_dssp SC-HHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHH-TTCEEEECHHHHHHHHH-HHHHHHHHSCCCTTHH
T ss_pred CC-HHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHh-cCCeeccCHHHHHHHHH-HhhhhcccccccCcHH
Confidence 44 99999999889999999999999998 455555444433 47789999999999986 444 699999
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCCCCEEEEEEecCCccc
Q psy1308 544 IKHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVS 582 (607)
Q Consensus 544 L~~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~~~~~~~ 582 (607)
+++.+++.+.....+. ....+..+.|+.++-...+
T Consensus 262 l~~~l~~~~~~~~~~~----~~~~~~~~~i~~~~v~~~l 296 (310)
T 1ofh_A 262 LHTVMERLMDKISFSA----SDMNGQTVNIDAAYVADAL 296 (310)
T ss_dssp HHHHHHHHSHHHHHHG----GGCTTCEEEECHHHHHHHT
T ss_pred HHHHHHHHHHhhhcCC----ccccCCEEEEeeHHHHHHH
Confidence 9999998777654322 2245677777766544433
No 120
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=3.5e-20 Score=183.93 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=135.8
Q ss_pred ccCCCCCHHHHHHHHcCCHHHHHHHHhcCCC----CCccC--------------------------CCCCCcHHHHHHHc
Q psy1308 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKL----DVNMR--------------------------HPLGWTPLHVAAIN 130 (607)
Q Consensus 81 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~~~~--------------------------d~~g~tpLh~A~~~ 130 (607)
..|..+.++++.+...|+..+.+++-..-+. .++.. +....++|+.|+..
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 4677788899999999987766655432110 01110 00124689999999
Q ss_pred CCHHHHHHHHHcCCCCCC--------CCCCchHHHHHHc---CCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHhc
Q psy1308 131 GKVDNVRVLLEAGANPNL--------GDLFNTVHRTAAE---KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA 199 (607)
Q Consensus 131 g~~~~v~~Ll~~ga~~~~--------~d~~~~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~~ 199 (607)
|+.+.++.+++.|++++. .+++||||+|+.. ++.+++++|+++|++++..+. .|+||||+|+..
T Consensus 141 ~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~-----~g~TpLh~A~~~ 215 (278)
T 1dcq_A 141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-----KGSTALHYCCLT 215 (278)
T ss_dssp TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-----TCCCHHHHHHHT
T ss_pred cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-----CCCCHHHHHHHc
Confidence 999999999999999763 2457899999999 899999999999999987754 499999999999
Q ss_pred CCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhH
Q psy1308 200 GNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248 (607)
Q Consensus 200 g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~ 248 (607)
|+.++|++|+++|+|++.+|..|+||||+|+..|+.+++++|++.+++.
T Consensus 216 g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999998864
No 121
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=1.8e-20 Score=192.59 Aligned_cols=130 Identities=21% Similarity=0.202 Sum_probs=116.4
Q ss_pred ccCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCC----CCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcC
Q psy1308 114 NMRHPLGWTPLHVAAIN-GKVDNVRVLLEAGANPNLGD----LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFL 188 (607)
Q Consensus 114 ~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~~~~d----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~ 188 (607)
+..+..+.||||+|+.. |+.+++++|+++|++++..+ ++||||+|+..|+.+++++|+++|++++..+. .
T Consensus 193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-----~ 267 (368)
T 3jue_A 193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-----A 267 (368)
T ss_dssp ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----T
T ss_pred ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-----C
Confidence 33445577999999999 99999999999999999876 46899999999999999999999999997754 4
Q ss_pred CcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhH
Q psy1308 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248 (607)
Q Consensus 189 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~ 248 (607)
|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+..+...
T Consensus 268 G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~ 327 (368)
T 3jue_A 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327 (368)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999999999999999999877543
No 122
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=2.7e-20 Score=152.18 Aligned_cols=93 Identities=41% Similarity=0.548 Sum_probs=79.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhhHHHh
Q psy1308 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVV 198 (607)
Q Consensus 119 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh~A~~ 198 (607)
+|+||||+|+..|+.+++++|+++|++++.+| ..|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d------------------------------------~~g~t~L~~A~~ 44 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD------------------------------------KNGRTPLHLAAR 44 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------------------------------TTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC------------------------------------CCCCCHHHHHHH
Confidence 36777777777777777777777777766543 239999999999
Q ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhh
Q psy1308 199 AGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247 (607)
Q Consensus 199 ~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~ 247 (607)
.|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|++
T Consensus 45 ~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999998863
No 123
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=7.5e-20 Score=197.18 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=114.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCC--------CCCchHHHHHH---cCCccHHHHHHhcCCCccccCCCCcCcC
Q psy1308 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLG--------DLFNTVHRTAA---EKKMNPFEVLLKREDEFNDVLNPNMTFL 188 (607)
Q Consensus 120 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~--------d~~~~l~~A~~---~~~~~~~~~Ll~~g~~~~~~~~~~~d~~ 188 (607)
..+.||.|+..|+.++|+.|++.|+++|.. +++||||+|+. .|+.+++++|+++|+++|..+. .
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~-----~ 206 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-----D 206 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCS-----S
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCC-----C
Confidence 347899999999999999999999999865 45789999976 8999999999999999998754 4
Q ss_pred CcchhhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHh
Q psy1308 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 189 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~ 250 (607)
|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+..|+.+++++|++.|++...
T Consensus 207 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp SCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 124
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=1.7e-19 Score=194.98 Aligned_cols=252 Identities=20% Similarity=0.280 Sum_probs=163.8
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
...+.+...++|++...+.+...+......... .+..++|+||+|+|||.+++.++..+.. ++..++++....
T Consensus 74 ~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~--~g~~vll~Gp~GtGKTtlar~ia~~l~~----~~~~i~~~~~~~- 146 (543)
T 3m6a_A 74 EAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL--KGPILCLAGPPGVGKTSLAKSIAKSLGR----KFVRISLGGVRD- 146 (543)
T ss_dssp TGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC--CSCEEEEESSSSSSHHHHHHHHHHHHTC----EEEEECCCC----
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC--CCCEEEEECCCCCCHHHHHHHHHHhcCC----CeEEEEecccch-
Confidence 334456677899999888886665444322222 2348999999999999999999999843 488898877654
Q ss_pred chhHhhhcCCCCCccCCCCchhhHHHhhC--CCeEEEEecCCccCHH----HHHHHHHhhccce---eecC-CCcEEecC
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQLTKRLKKC--PNAVVLFDEVDKAHPD----VLTVLLQLFDEGR---LTDG-KGKTIECK 410 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l~~~~~~~--~~~vl~lDEiek~~~~----~~~~Ll~~~~~~~---~~~~-~g~~~~~~ 410 (607)
...++|....|+|...+ .+...+..+ ..+|+|||||++++++ .++.|+++++.+. +.+. .+..+++.
T Consensus 147 --~~~~~g~~~~~ig~~~~-~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 147 --ESEIRGHRRTYVGAMPG-RIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp --------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred --hhhhhhHHHHHhccCch-HHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 45566666667775443 333444444 5679999999999998 5699999998654 3332 35567789
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
+++||+|||.. ..+. |.|++|++ ++.|
T Consensus 224 ~v~iI~ttN~~---------------------------------------------------~~l~-~aL~~R~~-vi~~ 250 (543)
T 3m6a_A 224 KVLFIATANNL---------------------------------------------------ATIP-GPLRDRME-IINI 250 (543)
T ss_dssp SCEEEEECSST---------------------------------------------------TTSC-HHHHHHEE-EEEC
T ss_pred ceEEEeccCcc---------------------------------------------------ccCC-HHHHhhcc-eeee
Confidence 99999999931 1243 89999994 7899
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCc---EEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHHhccCCC
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNI---NIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIGK 567 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i---~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l~~~~~~ 567 (607)
.+++.++...|+...+.....+ .+++ .+.++++++..|+..|+|++|+|+|++.|++.+.....+. +.+ .
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~---~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~-~~~---~ 323 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIK---EHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAI-VAE---E 323 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHH---HTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHH-HTT---C
T ss_pred CCCCHHHHHHHHHHHHHHHHHH---HcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHH-Hhc---C
Confidence 9999999999998877432222 2343 6789999999988779999999999999999776654333 332 2
Q ss_pred CCEEEEEEecCCccc
Q psy1308 568 GSFVRLYVQWSKEVS 582 (607)
Q Consensus 568 ~~~v~i~~~~~~~~~ 582 (607)
...+.|+.++-..++
T Consensus 324 ~~~~~It~~~l~~~L 338 (543)
T 3m6a_A 324 RKRITVTEKNLQDFI 338 (543)
T ss_dssp CSCCEECTTTTHHHH
T ss_pred CcceecCHHHHHHHh
Confidence 234455554443333
No 125
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=1.1e-18 Score=148.47 Aligned_cols=100 Identities=34% Similarity=0.482 Sum_probs=90.0
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcchhh
Q psy1308 115 MRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALH 194 (607)
Q Consensus 115 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~TpLh 194 (607)
.+|..|+||||+||..|+.+++++|+++|++++..|. .|+||||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~------------------------------------~g~t~L~ 47 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK------------------------------------DGNTPLH 47 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS------------------------------------SSCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC------------------------------------CCCCHHH
Confidence 4677888888888888888888888888887776532 3999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHHHHhhhhHHh
Q psy1308 195 YGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQR 250 (607)
Q Consensus 195 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~ll~~~~~~~~ 250 (607)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|++...
T Consensus 48 ~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~ 103 (115)
T 2l6b_A 48 LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103 (115)
T ss_dssp HHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHH
T ss_pred HHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998764
No 126
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.73 E-value=7.8e-17 Score=162.60 Aligned_cols=219 Identities=21% Similarity=0.313 Sum_probs=159.9
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHh-------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEE
Q psy1308 262 LEQRLKDRIVGQESAINIISAAIKRK-------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIR 331 (607)
Q Consensus 262 L~~~l~~~i~Gq~~ai~~l~~~i~~~-------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~ 331 (607)
+...+...++|++.+++.+...+... ..+...+..+.+++|+||+|+|||.+++.+++.+.... ..+++.
T Consensus 25 ~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~ 104 (309)
T 3syl_A 25 VLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVS 104 (309)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEE
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEE
Confidence 44556667999999999887666432 23334344445899999999999999999999875431 336888
Q ss_pred eecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc---------CHHHHHHHHHhhccceeecC
Q psy1308 332 LDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA---------HPDVLTVLLQLFDEGRLTDG 402 (607)
Q Consensus 332 l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~---------~~~~~~~Ll~~~~~~~~~~~ 402 (607)
++++.+.. .+ .|. ....+...+..+.+++|||||++.+ ++.+++.|+++++++.
T Consensus 105 ~~~~~l~~-----~~-------~g~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~---- 167 (309)
T 3syl_A 105 VTRDDLVG-----QY-------IGH-TAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR---- 167 (309)
T ss_dssp ECGGGTCC-----SS-------TTC-HHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT----
T ss_pred EcHHHhhh-----hc-------ccc-cHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC----
Confidence 87665421 12 221 1223456677778899999999977 8999999999998642
Q ss_pred CCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc
Q psy1308 403 KGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG 482 (607)
Q Consensus 403 ~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ 482 (607)
.+++||+++|...... . ... +|.|.+
T Consensus 168 -------~~~~~i~~~~~~~~~~--~--------------------------------------------~~~-~~~l~~ 193 (309)
T 3syl_A 168 -------DDLVVILAGYADRMEN--F--------------------------------------------FQS-NPGFRS 193 (309)
T ss_dssp -------TTCEEEEEECHHHHHH--H--------------------------------------------HHH-STTHHH
T ss_pred -------CCEEEEEeCChHHHHH--H--------------------------------------------Hhh-CHHHHH
Confidence 5678999998431110 0 001 288999
Q ss_pred cccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc------cCCCCCCccchhHHHHHHHHHHH
Q psy1308 483 RINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD------GYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 483 ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~------~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
|++.++.|.|++.+++..|+...+.. .+ +.+++++++.|.. .+.|++++|.+++.+++.+....
T Consensus 194 R~~~~i~~~~~~~~~~~~il~~~l~~--------~~--~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 194 RIAHHIEFPDYSDEELFEIAGHMLDD--------QN--YQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp HEEEEEEECCCCHHHHHHHHHHHHHH--------TT--CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEcCCcCHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888764 12 4689999988875 13899999999999999988777
Q ss_pred HHHHH
Q psy1308 557 AAAHE 561 (607)
Q Consensus 557 ~~~~l 561 (607)
.+.+.
T Consensus 264 ~r~~~ 268 (309)
T 3syl_A 264 NRLFT 268 (309)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 127
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=2.3e-17 Score=139.26 Aligned_cols=71 Identities=38% Similarity=0.496 Sum_probs=61.8
Q ss_pred hccCCCCCHHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy1308 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDL 151 (607)
Q Consensus 80 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 151 (607)
...+.+|.||||+||..|+.+++++|++.+ +++|.+|..|+||||+||..|+.+++++|+++|++++.+|.
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 88 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence 567889999999999999999999999998 89999999999999999999999999999999999887653
No 128
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.70 E-value=1.8e-17 Score=139.93 Aligned_cols=93 Identities=30% Similarity=0.319 Sum_probs=65.4
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCchHHHHHHcCCccHHHHHHhcCCCccccCCCCcCcCCcch
Q psy1308 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSA 192 (607)
Q Consensus 113 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~d~~g~Tp 192 (607)
++..|.+|.||||+||..|+.+++++|+++|++++.+|. .|+||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~------------------------------------~g~tp 60 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK------------------------------------NGSTP 60 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT------------------------------------TCCCH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCC------------------------------------CCCCH
Confidence 455677889999999999999999999999988877543 26666
Q ss_pred hhHHHhcCCHHHHHHHHhcCCCCCccCCCCCCCCcchhhhhHHHHHHHH
Q psy1308 193 LHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241 (607)
Q Consensus 193 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tpl~~A~~~~~~~~~~~l 241 (607)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|
T Consensus 61 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 61 LHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 6666666666666666666666666666666666666666666666554
No 129
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.63 E-value=8.2e-15 Score=149.71 Aligned_cols=196 Identities=17% Similarity=0.198 Sum_probs=146.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll 347 (607)
..++|++..++.+...+......- ..+.+++++||+|+|||.+++.+++.+. .+|+.++++........
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~---~~~~~vll~G~~GtGKT~la~~ia~~~~----~~~~~~~~~~~~~~~~~---- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRN---ECLDHILFSGPAGLGKTTLANIISYEMS----ANIKTTAAPMIEKSGDL---- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTT---SCCCCEEEECSTTSSHHHHHHHHHHHTT----CCEEEEEGGGCCSHHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcC---CCCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEecchhccchhHH----
Confidence 358999999999988887664211 1233789999999999999999998863 45899998776433222
Q ss_pred cCCCCCccCCCCchhhHHHh-hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCC-------cEEecCceEEEEecC
Q psy1308 348 GAPPGYLGHDDGGQLTKRLK-KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKG-------KTIECKDAIFVMTSN 419 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~-~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g-------~~~~~~~~~iI~tsn 419 (607)
...+. .+.+++||||||+.++++.|..|++.++++.+....+ ..++..++++|++||
T Consensus 98 ---------------~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 98 ---------------AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp ---------------HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred ---------------HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 22222 3567899999999999999999999999887654322 223334689999999
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
.. ..+. |.|++|++.++.+.|++.+++.
T Consensus 163 ~~---------------------------------------------------~~l~-~~L~~R~~~~i~l~~~~~~e~~ 190 (338)
T 3pfi_A 163 RA---------------------------------------------------GMLS-NPLRDRFGMQFRLEFYKDSELA 190 (338)
T ss_dssp CG---------------------------------------------------GGSC-HHHHTTCSEEEECCCCCHHHHH
T ss_pred Cc---------------------------------------------------cccC-HHHHhhcCEEeeCCCcCHHHHH
Confidence 31 1143 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 500 ~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
.++...+.. .+ +.+++++++.|+. .|++++|.+.+.+++.+.
T Consensus 191 ~il~~~~~~--------~~--~~~~~~~~~~l~~--~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 191 LILQKAALK--------LN--KTCEEKAALEIAK--RSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp HHHHHHHHH--------TT--CEECHHHHHHHHH--TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------cC--CCCCHHHHHHHHH--HHCcCHHHHHHHHHHHHH
Confidence 887765542 12 4689999999985 688999999999987643
No 130
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.59 E-value=4.5e-15 Score=131.72 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=92.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..+..+...+...... +.+++++||+|+|||.+|+.++...... ..+|+ ++|+.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~------~~~vll~G~~GtGKt~lA~~i~~~~~~~-~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET------DIAVWLYGAPGTGRMTGARYLHQFGRNA-QGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC------CSCEEEESSTTSSHHHHHHHHHHSSTTT-TSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCC------CCCEEEECCCCCCHHHHHHHHHHhCCcc-CCCEE-EECCCCCcc--------
Confidence 4788999999998888776432 3468999999999999999999887654 66899 999876543
Q ss_pred CCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHH
Q psy1308 349 APPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEI 425 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i 425 (607)
....+.+..+.++++|||||+.++++.|..|+++++.. ..++++|+|||.+....
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~-----------~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQE-----------HRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSS-----------SCSSCEEEEESSCHHHH
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhc-----------CCCEEEEEECCcCHHHH
Confidence 12345566677899999999999999999999999422 24567999999766544
No 131
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.53 E-value=2.1e-14 Score=157.66 Aligned_cols=220 Identities=17% Similarity=0.185 Sum_probs=140.0
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc---------
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ--------- 338 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~--------- 338 (607)
..++||..+++.+...+.... .++|+||+|+|||.+++.++..+... ..+.+.+++....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~----------~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR----------HVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC----------CEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCTTSCEEEEE
T ss_pred ceEECchhhHhhccccccCCC----------EEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccccCCcEEEE
Confidence 568999999988887776432 68999999999999999999987543 2223333221111
Q ss_pred -----------------------------------------------------ccchhHhhhcCC-------CCCccCCC
Q psy1308 339 -----------------------------------------------------EKHEVAKLIGAP-------PGYLGHDD 358 (607)
Q Consensus 339 -----------------------------------------------------~~~~~~~llg~~-------~g~~g~~~ 358 (607)
.......++|.. .+..+.+.
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 122234555532 11111111
Q ss_pred CchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCC----------cEEecCceEEEEecCcchHHHHHH
Q psy1308 359 GGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKG----------KTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 359 ~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g----------~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
.....+.+..+.++++||||++++++.+|+.|+++++++.+...++ ......+++||++||..
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~------- 262 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD------- 262 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-------
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-------
Confidence 1123456777889999999999999999999999999999876533 22234578899999932
Q ss_pred HhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccc---eeeeccCCHHHHHHHHHHH
Q psy1308 429 ALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE---IVYFLPFSKSELHTLVCRE 505 (607)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~---iv~f~pl~~~~~~~i~~~~ 505 (607)
+...|. |+|++||+. .+.|.+ ..++....+..+
T Consensus 263 ------------------------------------------~~~~l~-~~l~~R~~v~~i~i~l~~-~~~~~~~~~~~~ 298 (604)
T 3k1j_A 263 ------------------------------------------TVDKMH-PALRSRIRGYGYEVYMRT-TMPDTIENRRKL 298 (604)
T ss_dssp ------------------------------------------HHHHSC-HHHHHHHHHHSEEEECCS-EEECCHHHHHHH
T ss_pred ------------------------------------------HHhhcC-HHHHHHhhccceEeeccc-cccCCHHHHHHH
Confidence 112255 999999973 344433 333344445555
Q ss_pred HHHHHHHHhhcCCcEEEeCHhHHHHHHccCC-CCC-------CccchhHHHHH
Q psy1308 506 LNFWAKKALDKHNINIVWDIDVETILADGYD-VHY-------GARSIKHEVER 550 (607)
Q Consensus 506 l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~-~~~-------GaR~L~~~i~~ 550 (607)
+..+.+++... +....++++++..|.+.|. |++ +.|.+.+.++.
T Consensus 299 l~~~~~~~~~~-~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~ 350 (604)
T 3k1j_A 299 VQFVAQEVKRD-GKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRA 350 (604)
T ss_dssp HHHHHHHHHHH-CSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHH
T ss_pred HHHHHHHHhhc-cCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHH
Confidence 55555544322 2345789999999986232 333 47777777764
No 132
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.53 E-value=1.8e-14 Score=151.54 Aligned_cols=192 Identities=17% Similarity=0.262 Sum_probs=132.2
Q ss_pred hHhhhhHHHH---HHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 268 DRIVGQESAI---NIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 268 ~~i~Gq~~ai---~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
..++||+..+ ..+...+.... +.+++|+||+|+|||.+++.+++.+.. +|..+++.... ...+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--------~~~vLL~GppGtGKTtlAr~ia~~~~~----~f~~l~a~~~~-~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--------LHSMILWGPPGTGKTTLAEVIARYANA----DVERISAVTSG-VKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--------CCEEEEECSTTSSHHHHHHHHHHHTTC----EEEEEETTTCC-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--------CcEEEEECCCCCcHHHHHHHHHHHhCC----CeEEEEeccCC-HHHHH
Confidence 3589999998 67777776543 237899999999999999999998743 47777764432 12222
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHH
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~ 424 (607)
.++. ..........+++||||||+.++...|+.|++.++++. ++||++|+....
T Consensus 93 ~~~~------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~-------------v~lI~att~n~~- 146 (447)
T 3pvs_A 93 EAIE------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT-------------ITFIGATTENPS- 146 (447)
T ss_dssp HHHH------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-------------CEEEEEESSCGG-
T ss_pred HHHH------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-------------eEEEecCCCCcc-
Confidence 2221 01111123567999999999999999999999999743 567777652110
Q ss_pred HHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHH
Q psy1308 425 IAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCR 504 (607)
Q Consensus 425 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~ 504 (607)
..+. +.+++|+. ++.|.|++.+++..++..
T Consensus 147 ------------------------------------------------~~l~-~aL~sR~~-v~~l~~l~~edi~~il~~ 176 (447)
T 3pvs_A 147 ------------------------------------------------FELN-SALLSRAR-VYLLKSLSTEDIEQVLTQ 176 (447)
T ss_dssp ------------------------------------------------GSSC-HHHHTTEE-EEECCCCCHHHHHHHHHH
T ss_pred ------------------------------------------------cccC-HHHhCcee-EEeeCCcCHHHHHHHHHH
Confidence 1133 88999985 677999999999999888
Q ss_pred HHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 505 ELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 505 ~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
.+......+. +..+.++++++++|+. + |++++|.+.+.+++.+.
T Consensus 177 ~l~~~~~~~~---~~~~~i~~~al~~L~~-~-~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 177 AMEDKTRGYG---GQDIVLPDETRRAIAE-L-VNGDARRALNTLEMMAD 220 (447)
T ss_dssp HHHCTTTSST---TSSEECCHHHHHHHHH-H-HCSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhc---cccCcCCHHHHHHHHH-H-CCCCHHHHHHHHHHHHH
Confidence 8764322211 1467899999999986 5 88999999999987654
No 133
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.52 E-value=1.2e-13 Score=140.02 Aligned_cols=193 Identities=15% Similarity=0.155 Sum_probs=141.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..+..+...+....... ..+.+++++||+|+|||.+++.+++.+. .++..++++.........
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~---~~~~~vll~G~~GtGKT~la~~i~~~~~----~~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARK---EPLEHLLLFGPPGLGKTTLAHVIAHELG----VNLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHC---SCCCCCEEECCTTCCCHHHHHHHHHHHT----CCEEEECTTTCCSHHHHH----
T ss_pred HhhCHHHHHHHHHHHHHHHHccC---CCCCcEEEECCCCCCHHHHHHHHHHHhC----CCEEEEeccccCChHHHH----
Confidence 58899999888887776543210 1134789999999999999999999874 358888887764432222
Q ss_pred CCCCCccCCCCchhhHHHhh--CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCC-------cEEecCceEEEEecC
Q psy1308 349 APPGYLGHDDGGQLTKRLKK--CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKG-------KTIECKDAIFVMTSN 419 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~--~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g-------~~~~~~~~~iI~tsn 419 (607)
+.+.. +.+++||||||+.+++..+..|+++++++.+....+ ......++++|++||
T Consensus 82 ---------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~ 146 (324)
T 1hqc_A 82 ---------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146 (324)
T ss_dssp ---------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES
T ss_pred ---------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC
Confidence 22222 457899999999999999999999999887654322 122345788999998
Q ss_pred cchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHH
Q psy1308 420 LASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499 (607)
Q Consensus 420 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~ 499 (607)
.. ..|. +.|++|++.++.+.|++.+++.
T Consensus 147 ~~---------------------------------------------------~~~~-~~l~~R~~~~i~l~~~~~~e~~ 174 (324)
T 1hqc_A 147 RP---------------------------------------------------GLIT-APLLSRFGIVEHLEYYTPEELA 174 (324)
T ss_dssp CC---------------------------------------------------SSCS-CSTTTTCSCEEECCCCCHHHHH
T ss_pred Cc---------------------------------------------------ccCC-HHHHhcccEEEecCCCCHHHHH
Confidence 32 1143 8899999888999999999988
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 500 TLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 500 ~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
.++...+.. .+ +.+++++++.|+. + ++++.|.+++.+++.
T Consensus 175 ~~l~~~~~~--------~~--~~~~~~~~~~l~~-~-~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 175 QGVMRDARL--------LG--VRITEEAALEIGR-R-SRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHT--------TT--CCCCHHHHHHHHH-H-SCSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--------cC--CCCCHHHHHHHHH-H-ccCCHHHHHHHHHHH
Confidence 876655431 23 3588999999986 5 368889888887764
No 134
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.46 E-value=2.3e-14 Score=126.80 Aligned_cols=112 Identities=12% Similarity=0.157 Sum_probs=86.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..++.+...+...... +.+++++|++|+|||.+|+.++.... +|+.++|+......
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~------~~~vll~G~~GtGKt~lA~~i~~~~~-----~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR------TSPVFLTGEAGSPFETVARYFHKNGT-----PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC------SSCEEEEEETTCCHHHHHGGGCCTTS-----CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCC------CCcEEEECCCCccHHHHHHHHHHhCC-----CeEEechhhCChHh-------
Confidence 4788999999888888765432 34689999999999999999986543 78889988754321
Q ss_pred CCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcc
Q psy1308 349 APPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLA 421 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~ 421 (607)
..+.++.+.++++|||||+.++++.|..|+++++++. ..++++|+|||..
T Consensus 67 -------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYA 116 (143)
T ss_dssp -------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEEC
T ss_pred -------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCC
Confidence 2345666778999999999999999999999999763 2567899999954
No 135
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.44 E-value=2.7e-13 Score=139.10 Aligned_cols=218 Identities=14% Similarity=0.109 Sum_probs=129.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc---CCceEEeecccccccch---
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK---KEAFIRLDMSEYQEKHE--- 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~---~~~~~~l~~a~~~~~~~--- 342 (607)
.++|++..+..+........ +.+++|+||+|+|||.+++.+++.+.... ..+ ++|........
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~--------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 93 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG--------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPDWAT 93 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG--------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCTTCC
T ss_pred hccChHHHHHHHHHHhhCCC--------CceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccchhh
Confidence 48898887665433322111 12599999999999999999999875310 111 23332221111
Q ss_pred ---------------------hHhhhcCCC---CCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccce
Q psy1308 343 ---------------------VAKLIGAPP---GYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGR 398 (607)
Q Consensus 343 ---------------------~~~llg~~~---g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~ 398 (607)
...++|... .+.+. ......+.+..+.++++|||||++++++.|+.|+++++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~ 172 (350)
T 1g8p_A 94 VLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKG-EKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE 172 (350)
T ss_dssp CSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHC-GGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred hhccccccCCCcccccCCCcchhhheeechhhhhhcCC-ceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCc
Confidence 123333100 00000 00001123344568999999999999999999999999875
Q ss_pred --eecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccC
Q psy1308 399 --LTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFR 476 (607)
Q Consensus 399 --~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~ 476 (607)
+...++......++++|+|+|... ..+.
T Consensus 173 ~~~~~~g~~~~~~~~~~li~~~n~~~--------------------------------------------------~~l~ 202 (350)
T 1g8p_A 173 NVVERDGLSIRHPARFVLVGSGNPEE--------------------------------------------------GDLR 202 (350)
T ss_dssp EEECCTTCCEEEECCEEEEEEECSCS--------------------------------------------------CCCC
T ss_pred eEEEecceEEeeCCceEEEEEeCCCC--------------------------------------------------CCCC
Confidence 444444433445889999999310 1144
Q ss_pred ChhhhccccceeeeccC-CHHHHHHHHHHHHHHH-----------------HHHH---hhcCCcEEEeCHhHHHHHHccC
Q psy1308 477 RDEFLGRINEIVYFLPF-SKSELHTLVCRELNFW-----------------AKKA---LDKHNINIVWDIDVETILADGY 535 (607)
Q Consensus 477 ~~el~~ri~~iv~f~pl-~~~~~~~i~~~~l~~~-----------------~~~~---~~~~~i~l~~~~~a~~~L~~~~ 535 (607)
+.|++||+..+.+.|+ +.++..+|+...+... ..++ ... .-.+.++++++++|.+ +
T Consensus 203 -~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ls~~~~~~l~~-~ 279 (350)
T 1g8p_A 203 -PQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARER-LPKVEAPNTALYDCAA-L 279 (350)
T ss_dssp -HHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-GGGCBCCHHHHHHHHH-H
T ss_pred -HHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHh-CCCCCCCHHHHHHHHH-H
Confidence 8999999877888888 4555557776532110 0111 111 1134799999999986 5
Q ss_pred CCCCC---ccchhHHHHHH
Q psy1308 536 DVHYG---ARSIKHEVERQ 551 (607)
Q Consensus 536 ~~~~G---aR~L~~~i~~~ 551 (607)
.|.+| .|.+.+.++..
T Consensus 280 ~~~~~~~~~R~~~~ll~~a 298 (350)
T 1g8p_A 280 CIALGSDGLRGELTLLRSA 298 (350)
T ss_dssp HHHSSSCSHHHHHHHHHHH
T ss_pred HHHhCCCCccHHHHHHHHH
Confidence 55544 47777666543
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.43 E-value=7.4e-13 Score=133.97 Aligned_cols=210 Identities=16% Similarity=0.206 Sum_probs=143.8
Q ss_pred hHhhhhHHHHHHHHHHHHHhhC---CCCCCCC-CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKEN---GWTDDDH-PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~---~~~~~~~-p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|++.+++.+...+..... ....... +..++|+||+|+|||.+++.++..+. .+|+.++++.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~v~~~~l~~---- 89 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSSDLVS---- 89 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT----CEEEEEEHHHHHT----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC----CCEEEEchHHHhh----
Confidence 4688999999998877743211 1112222 34899999999999999999999874 3588888765422
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
.+.|.... .-..+....+....+|||||||+.+.+ .+++.|+..++.-. ....++
T Consensus 90 -~~~g~~~~-----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v 155 (322)
T 3eie_A 90 -KWMGESEK-----LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQGV 155 (322)
T ss_dssp -TTGGGHHH-----HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCCCE
T ss_pred -cccchHHH-----HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCCce
Confidence 11111000 011234445566779999999998865 46788888886321 112468
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP 492 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p 492 (607)
+||+|||... .+. |.+.+||+..+.+.+
T Consensus 156 ~vi~atn~~~---------------------------------------------------~ld-~al~~Rf~~~i~~~~ 183 (322)
T 3eie_A 156 LVLGATNIPW---------------------------------------------------QLD-SAIRRRFERRIYIPL 183 (322)
T ss_dssp EEEEEESCGG---------------------------------------------------GSC-HHHHHHCCEEEECCC
T ss_pred EEEEecCChh---------------------------------------------------hCC-HHHHcccCeEEEeCC
Confidence 8999998311 122 778889998888888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHHh
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEK 562 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l~ 562 (607)
++.++..+|+...+. +....+++..++.|+. ....+..+.|+..+.+....++.+....
T Consensus 184 p~~~~r~~il~~~~~----------~~~~~~~~~~l~~la~-~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 184 PDLAARTTMFEINVG----------DTPCVLTKEDYRTLGA-MTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp CCHHHHHHHHHHHHT----------TCCCCCCHHHHHHHHH-TTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhc----------cCCCCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998876553 1234567888899986 5566677889999998888888776543
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.41 E-value=3e-12 Score=129.82 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=138.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..++.+...+.... .|-.+++.||+|+|||.+++.+++.+.. .++.++++... ...+...+
T Consensus 27 ~ivg~~~~~~~l~~~l~~~~-------~~~~~L~~G~~G~GKT~la~~la~~l~~----~~~~i~~~~~~-~~~i~~~~- 93 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKGK-------IPHIILHSPSPGTGKTTVAKALCHDVNA----DMMFVNGSDCK-IDFVRGPL- 93 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTTC-------CCSEEEECSSTTSSHHHHHHHHHHHTTE----EEEEEETTTCC-HHHHHTHH-
T ss_pred HHhCcHHHHHHHHHHHHcCC-------CCeEEEeeCcCCCCHHHHHHHHHHHhCC----CEEEEcccccC-HHHHHHHH-
Confidence 58899999998888877321 2346888999999999999999998743 48888876643 22222211
Q ss_pred CCCCCccCCCCchhhHHHhh----CCCeEEEEecCCccC-HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchH
Q psy1308 349 APPGYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAH-PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASN 423 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~-~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~ 423 (607)
...... ....+++|||++.++ ++.++.|++++++.. .+++||++||...
T Consensus 94 --------------~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-----------~~~~iI~~~n~~~- 147 (324)
T 3u61_B 94 --------------TNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-----------SNCSIIITANNID- 147 (324)
T ss_dssp --------------HHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-----------GGCEEEEEESSGG-
T ss_pred --------------HHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-----------CCcEEEEEeCCcc-
Confidence 111111 146899999999999 999999999998532 5678999998211
Q ss_pred HHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHH
Q psy1308 424 EIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVC 503 (607)
Q Consensus 424 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~ 503 (607)
.+. +.+.+|+ .++.|.|++.++..+|+.
T Consensus 148 --------------------------------------------------~l~-~~l~sR~-~~i~~~~~~~~e~~~il~ 175 (324)
T 3u61_B 148 --------------------------------------------------GII-KPLQSRC-RVITFGQPTDEDKIEMMK 175 (324)
T ss_dssp --------------------------------------------------GSC-TTHHHHS-EEEECCCCCHHHHHHHHH
T ss_pred --------------------------------------------------ccC-HHHHhhC-cEEEeCCCCHHHHHHHHH
Confidence 133 7888999 478999999999999988
Q ss_pred HHHHHHHHHHhhcCCcEEEeCH-hHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 504 RELNFWAKKALDKHNINIVWDI-DVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 504 ~~l~~~~~~~~~~~~i~l~~~~-~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
..+..+...+... + +.+++ ++++.|+. + +.+++|.+.+.++...
T Consensus 176 ~~~~~l~~~~~~~-~--~~~~~~~~~~~l~~-~-~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 176 QMIRRLTEICKHE-G--IAIADMKVVAALVK-K-NFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHHHHHHHHHHH-T--CCBSCHHHHHHHHH-H-TCSCTTHHHHHHHHHG
T ss_pred HHHHHHHHHHHHc-C--CCCCcHHHHHHHHH-h-CCCCHHHHHHHHHHHh
Confidence 8887776665544 3 46777 99999985 3 6688998887777643
No 138
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.39 E-value=8e-13 Score=131.64 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCc
Q psy1308 275 SAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYL 354 (607)
Q Consensus 275 ~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~ 354 (607)
..++.+...+.+..........|..++++||+|||||.+++.+++.+.. +++.++++.+... |+
T Consensus 14 ~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~----~~i~v~~~~l~~~------------~~ 77 (293)
T 3t15_A 14 AFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI----NPIMMSAGELESG------------NA 77 (293)
T ss_dssp HHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTC----CCEEEEHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCC----CEEEEeHHHhhhc------------cC
Confidence 3444554455555444555566778999999999999999999999844 5899988765321 22
Q ss_pred cCCCCchhhHHH-------hhCCCeEEEEecCCccCH-------------HHHHHHHHhhccceeecCCC--cEEecCce
Q psy1308 355 GHDDGGQLTKRL-------KKCPNAVVLFDEVDKAHP-------------DVLTVLLQLFDEGRLTDGKG--KTIECKDA 412 (607)
Q Consensus 355 g~~~~~~l~~~~-------~~~~~~vl~lDEiek~~~-------------~~~~~Ll~~~~~~~~~~~~g--~~~~~~~~ 412 (607)
|. ..+.+...+ +...++||||||||++.+ .+++.|+++++........| ......++
T Consensus 78 g~-~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v 156 (293)
T 3t15_A 78 GE-PAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARV 156 (293)
T ss_dssp -H-HHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCC
T ss_pred ch-hHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCc
Confidence 21 112233334 344789999999998865 46799999999666544333 33456789
Q ss_pred EEEEecC
Q psy1308 413 IFVMTSN 419 (607)
Q Consensus 413 ~iI~tsn 419 (607)
+||+|||
T Consensus 157 ~vI~ttN 163 (293)
T 3t15_A 157 PIIVTGN 163 (293)
T ss_dssp CEEEECS
T ss_pred EEEEecC
Confidence 9999999
No 139
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.39 E-value=4.5e-12 Score=127.92 Aligned_cols=208 Identities=16% Similarity=0.210 Sum_probs=141.5
Q ss_pred hHhhhhHHHHHHHHHHHHHhh---CCCCCCCCC-ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKE---NGWTDDDHP-LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~---~~~~~~~~p-~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..+.|++.+++.+.+.+.... .-+.....| ..++|+||+|+|||.+++.++..+. ..+|+.++++....
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~~l~~---- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVS---- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECCSSCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhHHHHh----
Confidence 468889999888887775321 111111223 4899999999999999999998872 34688888875532
Q ss_pred HhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccC-----------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 344 AKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAH-----------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~-----------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
.|.|.... ..+....+....+||||||||.+. ..+++.|+..++.-. ....
T Consensus 85 --------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~ 148 (322)
T 1xwi_A 85 --------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDND 148 (322)
T ss_dssp --------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCT
T ss_pred --------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccCC
Confidence 12221111 123344455678999999999883 245677777776321 1235
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
+++||+|||... .+. +.+++|++..+.+
T Consensus 149 ~v~vI~atn~~~---------------------------------------------------~ld-~al~rRf~~~i~i 176 (322)
T 1xwi_A 149 GILVLGATNIPW---------------------------------------------------VLD-SAIRRRFEKRIYI 176 (322)
T ss_dssp TEEEEEEESCTT---------------------------------------------------TSC-HHHHHTCCEEEEC
T ss_pred CEEEEEecCCcc---------------------------------------------------cCC-HHHHhhcCeEEEe
Confidence 788999999321 022 7788899888888
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHH
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHE 561 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l 561 (607)
.+++.++..+|+...+. +....+++..++.|++ ....+..+.|+..+.+....++.+.+.
T Consensus 177 ~~P~~~~r~~il~~~l~----------~~~~~l~~~~l~~la~-~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 177 PLPEPHARAAMFKLHLG----------TTQNSLTEADFRELGR-KTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp CCCCHHHHHHHHHHHHT----------TCCBCCCHHHHHHHHH-TCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh----------cCCCCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 88899998888776553 1223457888899986 556666788999999988888876654
No 140
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.39 E-value=3.1e-12 Score=130.98 Aligned_cols=207 Identities=16% Similarity=0.228 Sum_probs=139.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhh---CCCCCCCC-CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKE---NGWTDDDH-PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~---~~~~~~~~-p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|++.+++.+...+.... ..+..... +..++|+||+|+|||.+|+.++..+. .+|+.++++.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~~~~l~~---- 122 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSSDLVS---- 122 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEEHHHHHS----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEeeHHHHhh----
Confidence 458899999999887774321 00111122 33789999999999999999999884 3588887764321
Q ss_pred HhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEecC
Q psy1308 344 AKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
.|.|.... ..+....+....+|||||||+.+.+ .+++.|+..++.-. ....
T Consensus 123 --------~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~ 186 (355)
T 2qp9_X 123 --------KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQ 186 (355)
T ss_dssp --------CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------C
T ss_pred --------hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccCC
Confidence 12221110 1223334455789999999999874 36778888876321 1235
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
+++||+|||... .+. +.+++||+..+.+
T Consensus 187 ~v~vI~atn~~~---------------------------------------------------~ld-~al~rRf~~~i~i 214 (355)
T 2qp9_X 187 GVLVLGATNIPW---------------------------------------------------QLD-SAIRRRFERRIYI 214 (355)
T ss_dssp CEEEEEEESCGG---------------------------------------------------GSC-HHHHHTCCEEEEC
T ss_pred CeEEEeecCCcc---------------------------------------------------cCC-HHHHcccCEEEEe
Confidence 688999999321 122 7778899888888
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHH
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHE 561 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l 561 (607)
.+++.++..+|+...+. +....+++..++.|+. ....+..|.|+..+.+.+..++.+...
T Consensus 215 ~~P~~~~r~~il~~~l~----------~~~~~~~~~~l~~la~-~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 215 PLPDLAARTTMFEINVG----------DTPSVLTKEDYRTLGA-MTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp CCCCHHHHHHHHHHHHT----------TSCBCCCHHHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh----------hCCCCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999888776553 1123467888888885 445567789999999998888876653
No 141
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.39 E-value=7.6e-12 Score=131.97 Aligned_cols=210 Identities=15% Similarity=0.171 Sum_probs=141.1
Q ss_pred hHhhhhHHHHHHHHHHHHHhh---CCCCCCCC-CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKE---NGWTDDDH-PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~---~~~~~~~~-p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|++.+++.+...+.... ..+..... +..++|+||+|+|||.+|+.++..+. ..+|+.++++.+.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~~l~----- 205 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLV----- 205 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC--------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHHHHH-----
Confidence 458899999998887774321 11111122 34899999999999999999999872 3468888887543
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccC-----------HHHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH-----------PDVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~-----------~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
..+.|.... ....+....+....+|||||||+.+. ..+++.|+..++.-. ....++
T Consensus 206 ~~~~g~~~~-----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~v 272 (444)
T 2zan_A 206 SKWLGESEK-----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDGI 272 (444)
T ss_dssp ------CCC-----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSSC
T ss_pred hhhcchHHH-----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCCE
Confidence 222332111 11234444556678999999999883 357778888776321 123578
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP 492 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p 492 (607)
+||+|||... .+. |.+++||+.++.+.+
T Consensus 273 ~vI~atn~~~---------------------------------------------------~ld-~al~rRf~~~i~i~~ 300 (444)
T 2zan_A 273 LVLGATNIPW---------------------------------------------------VLD-SAIRRRFEKRIYIPL 300 (444)
T ss_dssp EEEEEESCGG---------------------------------------------------GSC-HHHHTTCCEEEECCC
T ss_pred EEEecCCCcc---------------------------------------------------ccC-HHHHhhcceEEEeCC
Confidence 9999999320 022 778889988888888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHH
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHE 561 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l 561 (607)
++.++...|+...+. +....+++..++.|+. ....+..+.|+..+.+.+..++.+.+.
T Consensus 301 P~~~~r~~il~~~l~----------~~~~~l~~~~l~~la~-~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 301 PEAHARAAMFRLHLG----------STQNSLTEADFQELGR-KTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp CCHHHHHHHHHHHHT----------TSCEECCHHHHHHHHH-HTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh----------cCCCCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888766543 2234578888899986 445566789999999998888876654
No 142
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=2.9e-13 Score=147.44 Aligned_cols=237 Identities=12% Similarity=0.114 Sum_probs=141.8
Q ss_pred cccHHHHHHhHhhhhHHHHHHHHHHHHHhhCC-C--CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEE----
Q psy1308 259 KYPLEQRLKDRIVGQESAINIISAAIKRKENG-W--TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR---- 331 (607)
Q Consensus 259 ~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~-~--~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~---- 331 (607)
...+...+...++||+.+.+.+..++...... . .......+++|+||+|+|||.+|+.+++.+... +..
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~----~~~~~~~ 361 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRA----VYTTGKG 361 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCE----ECCCTTC
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCc----eecCCCc
Confidence 44566777788999998776664433221000 0 111223379999999999999999999876432 111
Q ss_pred eecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeec-CCCcEE-ec
Q psy1308 332 LDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD-GKGKTI-EC 409 (607)
Q Consensus 332 l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~-~~g~~~-~~ 409 (607)
..++.+.+....... .| ......+.+..+.+||+|||||++++++.|+.|+++|+++.++. ..|... ..
T Consensus 362 ~~~~~l~~~~~~~~~-------~g--~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~ 432 (595)
T 3f9v_A 362 STAAGLTAAVVREKG-------TG--EYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLN 432 (595)
T ss_dssp STTTTSEEECSSGGG-------TS--SCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEEC
T ss_pred cccccccceeeeccc-------cc--cccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEec
Confidence 111222111100000 11 11112344556678999999999999999999999999999873 334333 34
Q ss_pred CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceee
Q psy1308 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVY 489 (607)
Q Consensus 410 ~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~ 489 (607)
.+++||+|||..... .. .... .. .. -.+. +.|++|||.++.
T Consensus 433 ~~~~vIaatNp~~G~---------------~~----~~~~--------~~----~n-------i~l~-~aLl~RFDl~~~ 473 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGR---------------YI----SERP--------VS----DN-------INLP-PTILSRFDLIFI 473 (595)
T ss_dssp CCCEEEEEECCTTCC---------------SC----TTSC--------SC----TT-------TCSC-SSSGGGCSCCEE
T ss_pred CceEEEEEcCCcCCc---------------cC----cccC--------ch----hc-------cCCC-HHHHhhCeEEEE
Confidence 678999999943100 00 0000 00 00 0243 899999998888
Q ss_pred eccCCHHHHHHHHHHHHH-----------------HHHHHHhhcCCcEEEeCHhHHHHHHccC-------------CCCC
Q psy1308 490 FLPFSKSELHTLVCRELN-----------------FWAKKALDKHNINIVWDIDVETILADGY-------------DVHY 539 (607)
Q Consensus 490 f~pl~~~~~~~i~~~~l~-----------------~~~~~~~~~~~i~l~~~~~a~~~L~~~~-------------~~~~ 539 (607)
+.++..++-..|+.+.+. .+....+. .+...+++++.+.|...| .++.
T Consensus 474 ~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~--~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~ 551 (595)
T 3f9v_A 474 LKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK--YVTPKITSEAKNLITDFFVEMRKKSSETPDSPILI 551 (595)
T ss_dssp ECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH--HHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCS
T ss_pred eCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence 888766554455554432 22222111 123368888888887522 4788
Q ss_pred CccchhHHHH
Q psy1308 540 GARSIKHEVE 549 (607)
Q Consensus 540 GaR~L~~~i~ 549 (607)
.+|.+.+.++
T Consensus 552 s~R~l~~lir 561 (595)
T 3f9v_A 552 TPRQLEALIR 561 (595)
T ss_dssp STTTTTHHHH
T ss_pred cHHHHHHHHH
Confidence 9999998886
No 143
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.36 E-value=4.4e-12 Score=134.39 Aligned_cols=141 Identities=23% Similarity=0.295 Sum_probs=96.0
Q ss_pred cHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 261 PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 261 ~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.+...+...++|++..++.+..++... .+++|+||||+|||.+|+.++..+.. ..+|..+.+....
T Consensus 15 ~l~~~l~~~ivGq~~~i~~l~~al~~~----------~~VLL~GpPGtGKT~LAraLa~~l~~--~~~f~~~~~~~~t-- 80 (500)
T 3nbx_X 15 RLSSSLEKGLYERSHAIRLCLLAALSG----------ESVFLLGPPGIAKSLIARRLKFAFQN--ARAFEYLMTRFST-- 80 (500)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHT----------CEEEEECCSSSSHHHHHHHGGGGBSS--CCEEEEECCTTCC--
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcC----------CeeEeecCchHHHHHHHHHHHHHHhh--hhHHHHHHHhcCC--
Confidence 456677788999999998887766533 27899999999999999999988743 4456666665322
Q ss_pred chhHhhhcCCCCCccCCCCchhhHHHhhC--CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 341 HEVAKLIGAPPGYLGHDDGGQLTKRLKKC--PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~~~l~~~~~~~--~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
...++|...++... ..+.+....... ..+|+|||||+++++.+|+.|+++++++.++. .|........++|++|
T Consensus 81 --~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~iI~AT 156 (500)
T 3nbx_X 81 --PEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRLLVAAS 156 (500)
T ss_dssp --HHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCEEEEEE
T ss_pred --HHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhhhhhcc
Confidence 35777743322110 111111100000 24689999999999999999999999999887 4555555555668888
Q ss_pred C
Q psy1308 419 N 419 (607)
Q Consensus 419 n 419 (607)
|
T Consensus 157 N 157 (500)
T 3nbx_X 157 N 157 (500)
T ss_dssp S
T ss_pred c
Confidence 8
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.35 E-value=1e-11 Score=118.11 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=131.5
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~ll 347 (607)
.++|++..++.+...+.... +..++++||+|+|||.+++.+++.+.... ...++.++++...+.......+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~--------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKN--------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHhCCC--------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHH
Confidence 47889999988888776431 22489999999999999999998864321 3457777776554433222222
Q ss_pred cCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
...... .........+|+|||++.+++..++.|++++++. ..++++|++||..
T Consensus 90 ~~~~~~----------~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~------ 142 (226)
T 2chg_A 90 KEFART----------APIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILSCNYV------ 142 (226)
T ss_dssp HHHHTS----------CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESCG------
T ss_pred HHHhcc----------cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-----------CCCCeEEEEeCCh------
Confidence 100000 0011245789999999999999999999999853 2467788888721
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~ 507 (607)
..+. +.+.+|+. .+.|.|++.+++.+++...+.
T Consensus 143 ---------------------------------------------~~~~-~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 143 ---------------------------------------------SRII-EPIQSRCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp ---------------------------------------------GGSC-HHHHTTSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------hhcC-HHHHHhCc-eeecCCCCHHHHHHHHHHHHH
Confidence 0122 77888886 789999999999888776553
Q ss_pred HHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 508 FWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 508 ~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
. . + +.+++++++.|.. .+.++.|.+.+.+++..
T Consensus 176 ~----~----~--~~~~~~~~~~l~~--~~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 176 K----E----G--VKITEDGLEALIY--ISGGDFRKAINALQGAA 208 (226)
T ss_dssp H----H----T--CCBCHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred H----c----C--CCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 2 1 2 2378999998874 35788898888887654
No 145
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.32 E-value=5.6e-12 Score=130.18 Aligned_cols=218 Identities=16% Similarity=0.195 Sum_probs=134.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc-----h
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH-----E 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~-----~ 342 (607)
..++|++..++.+.........+... +..++|+||+|+|||.+++.+++.+.. ..+|..+.+..+.... .
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~---~~~vLl~GppGtGKT~la~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIA---GRAVLIAGQPGTGKTAIAMGMAQALGP--DTPFTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCT---TCEEEEEESTTSSHHHHHHHHHHHHCS--SCCEEEEEGGGGSCSSSCHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCC---CCEEEEECCCCCCHHHHHHHHHHHhcc--cCCcccccchhhhhcccchhHH
Confidence 35889999988776665555443221 247999999999999999999999853 4578887765522111 0
Q ss_pred hHhhh--------------------------------cCCCCCccCCCCchhhHHHhh--------CC----CeEEEEec
Q psy1308 343 VAKLI--------------------------------GAPPGYLGHDDGGQLTKRLKK--------CP----NAVVLFDE 378 (607)
Q Consensus 343 ~~~ll--------------------------------g~~~g~~g~~~~~~l~~~~~~--------~~----~~vl~lDE 378 (607)
..+.+ +...++.|. -...+...+.. .. .+||||||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE-IKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccc-cHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 00000 000111110 01112221111 11 36999999
Q ss_pred CCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhc
Q psy1308 379 VDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTI 458 (607)
Q Consensus 379 iek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
|+.++++.++.|++.+++.. .. ++|++++.+...+ .... ..
T Consensus 198 i~~l~~~~~~~L~~~le~~~-----------~~-~~ii~t~~~~~~i-------------------~~t~-~~------- 238 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESDM-----------AP-VLIMATNRGITRI-------------------RGTS-YQ------- 238 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCTT-----------CC-EEEEEESCSEEEC-------------------BTSS-CE-------
T ss_pred ccccChHHHHHHHHHhhCcC-----------CC-eeeeecccceeee-------------------eccC-CC-------
Confidence 99999999999999998532 22 3444444221100 0000 00
Q ss_pred chhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCC
Q psy1308 459 SRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVH 538 (607)
Q Consensus 459 ~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~ 538 (607)
....+. |.+++|+.. +.|.|++.+++.+|+...+.. .+ +.++++++++|++ +.++
T Consensus 239 ------------~~~~l~-~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~--------~~--~~~~~~~l~~l~~-~~~~ 293 (368)
T 3uk6_A 239 ------------SPHGIP-IDLLDRLLI-VSTTPYSEKDTKQILRIRCEE--------ED--VEMSEDAYTVLTR-IGLE 293 (368)
T ss_dssp ------------EETTCC-HHHHTTEEE-EEECCCCHHHHHHHHHHHHHH--------TT--CCBCHHHHHHHHH-HHHH
T ss_pred ------------CcccCC-HHHHhhccE-EEecCCCHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHHH-HhcC
Confidence 001133 889999965 799999999999998876542 12 3589999999986 6666
Q ss_pred CCccchhHHHHHHHHHH
Q psy1308 539 YGARSIKHEVERQVVSQ 555 (607)
Q Consensus 539 ~GaR~L~~~i~~~i~~~ 555 (607)
++.|.+.+.+++.+..+
T Consensus 294 G~~r~~~~ll~~a~~~A 310 (368)
T 3uk6_A 294 TSLRYAIQLITAASLVC 310 (368)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 88999998888766543
No 146
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=5.3e-12 Score=128.50 Aligned_cols=196 Identities=21% Similarity=0.293 Sum_probs=124.8
Q ss_pred hHhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc
Q psy1308 268 DRIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
..+.|.+.+++.+.+.+... ..+.. .|.-+||+||||||||.+|+++|..+.. +|+.++.+....
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTllAkAiA~e~~~----~f~~v~~s~l~s 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLLARAVAHHTDC----KFIRVSGAELVQ 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHHHHHHHHHHTC----EEEEEEGGGGSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHHHHHHHHhhCC----CceEEEhHHhhc
Confidence 35778888888877666432 22322 2447999999999999999999998754 599998876532
Q ss_pred cchhHhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccCH-----------H---HHHHHHHhhccceeecCC
Q psy1308 340 KHEVAKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAHP-----------D---VLTVLLQLFDEGRLTDGK 403 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~~-----------~---~~~~Ll~~~~~~~~~~~~ 403 (607)
+ |+|.... ..+....+....+||||||||.+-+ . +...||..++.-.
T Consensus 221 -----k-------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----- 283 (405)
T 4b4t_J 221 -----K-------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE----- 283 (405)
T ss_dssp -----S-------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----
T ss_pred -----c-------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----
Confidence 1 2221111 2344555666789999999998632 2 3455666665211
Q ss_pred CcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc-
Q psy1308 404 GKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG- 482 (607)
Q Consensus 404 g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~- 482 (607)
...++++|+|||... . + .|.|+.
T Consensus 284 ----~~~~V~vIaATNrpd-------------------------------------------~--------L-DpAllRp 307 (405)
T 4b4t_J 284 ----TSKNIKIIMATNRLD-------------------------------------------I--------L-DPALLRP 307 (405)
T ss_dssp ----CCCCEEEEEEESCSS-------------------------------------------S--------S-CHHHHST
T ss_pred ----CCCCeEEEeccCChh-------------------------------------------h--------C-CHhHcCC
Confidence 125788999999311 1 1 155654
Q ss_pred -cccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 483 -RINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 483 -ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
|||..+.|.+++.++..+|++..+.. +. +++++ ++.|++ -...+.+..|++.+..+...++
T Consensus 308 GRfD~~I~i~lPd~~~R~~Il~~~~~~----------~~--l~~dvdl~~lA~-~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 308 GRIDRKIEFPPPSVAARAEILRIHSRK----------MN--LTRGINLRKVAE-KMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp TSSCCEEECCCCCHHHHHHHHHHHHTT----------SB--CCSSCCHHHHHH-HCCSCCHHHHHHHHHHHHHHHH
T ss_pred CcCceEEEcCCcCHHHHHHHHHHHhcC----------CC--CCccCCHHHHHH-HCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999997655431 11 22222 456664 2333455668877776655444
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.31 E-value=2.4e-11 Score=121.57 Aligned_cols=204 Identities=19% Similarity=0.245 Sum_probs=133.3
Q ss_pred hHhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc
Q psy1308 268 DRIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
..++|++.+++.+...+... ..+. ..+..++|+||+|+|||.+++.++..+. .+|+.++++.+
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~---~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~~~l-- 85 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM---TPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPEL-- 85 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECHHHH--
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC---CCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEhHHH--
Confidence 35888888888888777543 1111 1234799999999999999999998873 45888887654
Q ss_pred cchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHH--------------HHHHHHHhhccceeecCCCc
Q psy1308 340 KHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD--------------VLTVLLQLFDEGRLTDGKGK 405 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~--------------~~~~Ll~~~~~~~~~~~~g~ 405 (607)
...++|..... ...+.........+++|||||+.+.+. ++..|+..++.-.
T Consensus 86 ---~~~~~g~~~~~-----~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~------- 150 (301)
T 3cf0_A 86 ---LTMWFGESEAN-----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------- 150 (301)
T ss_dssp ---HHHHHTTCTTH-----HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-------
T ss_pred ---HhhhcCchHHH-----HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-------
Confidence 23455532211 112333344456799999999986543 5788888887321
Q ss_pred EEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--c
Q psy1308 406 TIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--R 483 (607)
Q Consensus 406 ~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--r 483 (607)
...+++||+|||.... +. |.++. |
T Consensus 151 --~~~~v~vi~atn~~~~---------------------------------------------------ld-~al~r~gR 176 (301)
T 3cf0_A 151 --TKKNVFIIGATNRPDI---------------------------------------------------ID-PAILRPGR 176 (301)
T ss_dssp --TTSSEEEEEEESCGGG---------------------------------------------------SC-GGGGSTTS
T ss_pred --CCCCEEEEEecCCccc---------------------------------------------------cC-hHHhcCCc
Confidence 1257899999993210 11 55555 8
Q ss_pred ccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHHHHHHHHHHh
Q psy1308 484 INEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVVSQLAAAHEK 562 (607)
Q Consensus 484 i~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~~~l~~~~l~ 562 (607)
|+..+.+.+++.++..+|+...+.. .+....++ ++.|+. .+.|++ +.|++.+++.+..++.+.+..
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~l~~--------~~~~~~~~---~~~la~~~~g~sg--~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 177 LDQLIYIPLPDEKSRVAILKANLRK--------SPVAKDVD---LEFLAKMTNGFSG--ADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTT--------SCBCSSCC---HHHHHHTCSSCCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEecCCcCHHHHHHHHHHHHcc--------CCCCccch---HHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 9888888889999988887665532 12211122 344543 333433 489999999988888776643
No 148
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.2e-11 Score=121.05 Aligned_cols=243 Identities=11% Similarity=0.012 Sum_probs=153.4
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.+.+.+.-+..+...+.....+. +|..++++||||||||.+++.+++.+.... .-.++.++|........
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~----~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSS----QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 47778888888887777665432 356889999999999999999999885421 12467788877655433
Q ss_pred h-----HhhhcCCCCCccCCCCchhhHHHh-----hCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 343 V-----AKLIGAPPGYLGHDDGGQLTKRLK-----KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 343 ~-----~~llg~~~g~~g~~~~~~l~~~~~-----~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
+ ..+.|.... .......+...+. .....|++|||+|.+. -|+.|+.+++-.. ...+++
T Consensus 97 ~~~~I~~~L~g~~~~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s~~ 164 (318)
T 3te6_A 97 LYEKIWFAISKENLC--GDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNSKL 164 (318)
T ss_dssp HHHHHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSCCE
T ss_pred HHHHHHHHhcCCCCC--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCCcE
Confidence 2 233343211 1011122333333 2346899999999998 5677777775211 122567
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhcccc-ceeeec
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRIN-EIVYFL 491 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~-~iv~f~ 491 (607)
+||+++|.-. ..... + ++.+.+|+. .++.|.
T Consensus 165 ~vI~i~n~~d-------------------------------------------~~~~~----L-~~~v~SR~~~~~i~F~ 196 (318)
T 3te6_A 165 SIICVGGHNV-------------------------------------------TIREQ----I-NIMPSLKAHFTEIKLN 196 (318)
T ss_dssp EEEEECCSSC-------------------------------------------CCHHH----H-HTCHHHHTTEEEEECC
T ss_pred EEEEEecCcc-------------------------------------------cchhh----c-chhhhccCCceEEEeC
Confidence 8999998210 00000 1 144567775 579999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHh-------------------------hcCCcEEEeCHhHHHHHHc-cCCCCCCccchh
Q psy1308 492 PFSKSELHTLVCRELNFWAKKAL-------------------------DKHNINIVWDIDVETILAD-GYDVHYGARSIK 545 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~-------------------------~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~ 545 (607)
|++.+++.+|+...+......+. .-.++.+.++++|++++++ .-...+.+|--=
T Consensus 197 pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al 276 (318)
T 3te6_A 197 KVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAF 276 (318)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHH
Confidence 99999999999988876432100 0001245789999999985 234578899888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEEEEe
Q psy1308 546 HEVERQVVSQLAAAHEKSVIGKGSFVRLYVQ 576 (607)
Q Consensus 546 ~~i~~~i~~~l~~~~l~~~~~~~~~v~i~~~ 576 (607)
+.+++.+...-.+.+.+..... ..++|+..
T Consensus 277 ~ilr~A~~~ae~e~~~k~~~~~-~~~~i~~~ 306 (318)
T 3te6_A 277 KICEAAVEISKKDFVRKGGLQK-GKLVVSQE 306 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTEET-TEECCSEE
T ss_pred HHHHHHHHHHHHHHHhccCCCC-CcEEeeHH
Confidence 8888888877777776655432 34444443
No 149
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.30 E-value=2.7e-12 Score=126.66 Aligned_cols=195 Identities=17% Similarity=0.221 Sum_probs=118.8
Q ss_pred HhhhhHHHHHHHHHH----HHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 269 RIVGQESAINIISAA----IKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~----i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.++|++.+++.+... ....... ....+..++|+||+|+|||.+|+.+++.+. .+|+.++++.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~--~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~~~~i~~~~-------- 99 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS--DRTPLVSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPD-------- 99 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC--SSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGG--------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CCEEEEeCHH--------
Confidence 456666666655542 2221110 112234899999999999999999999863 4588888764
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc----------CHHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA----------HPDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
.++|...+.. ...-..+.........++||||||+.+ ...+++.|..+++... ....+++|
T Consensus 100 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~--------~~~~~~~i 170 (272)
T 1d2n_A 100 KMIGFSETAK-CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP--------PQGRKLLI 170 (272)
T ss_dssp GCTTCCHHHH-HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC--------STTCEEEE
T ss_pred HhcCCchHHH-HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc--------CCCCCEEE
Confidence 2222111000 000011222233456899999999987 4556666666665211 11245778
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFS 494 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~ 494 (607)
|+|||... .+ .. ..+.+|++..+.+.|++
T Consensus 171 i~ttn~~~-~l----------------------------------------------~~----~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 171 IGTTSRKD-VL----------------------------------------------QE----MEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp EEEESCHH-HH----------------------------------------------HH----TTCTTTSSEEEECCCEE
T ss_pred EEecCChh-hc----------------------------------------------ch----hhhhcccceEEcCCCcc
Confidence 99998321 11 00 14567888888888886
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH---ccCCCCCCccchhHHHHHHH
Q psy1308 495 K-SELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA---DGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 495 ~-~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~---~~~~~~~GaR~L~~~i~~~i 552 (607)
. +++..++... . .++++++..|+ .+|+|++++|.+.+.+++..
T Consensus 200 ~r~~i~~i~~~~-----------~----~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 200 TGEQLLEALELL-----------G----NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp EHHHHHHHHHHH-----------T----CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-----------C----CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 6 6666665431 1 25788888776 37999999999999998754
No 150
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=128.25 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=130.4
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC---CCC-CCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENG---WTD-DDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~---~~~-~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|++.+++.+...+...... +.. ...+..++|+||+|+|||.+|+.++..+. .+|+.++++.+...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~----~~~~~v~~~~l~~~--- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN----ATFFNISAASLTSK--- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT----CEEEEECSCCC------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc----CcEEEeeHHHhhcc---
Confidence 46899999999998877543211 011 11234899999999999999999998864 45999998776432
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
+.|.... ....+....+....+||||||||.+ ...++..|+..++...-. ...++
T Consensus 188 --~~g~~~~-----~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v 253 (389)
T 3vfd_A 188 --YVGEGEK-----LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-------GDDRV 253 (389)
T ss_dssp ------CHH-----HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------CE
T ss_pred --ccchHHH-----HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-------CCCCE
Confidence 1111100 0112334445566799999999988 456778888888732211 12468
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeecc
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLP 492 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~p 492 (607)
+||+|||... .+. +.+++||+.++.+.+
T Consensus 254 ~vI~atn~~~---------------------------------------------------~l~-~~l~~R~~~~i~i~~ 281 (389)
T 3vfd_A 254 LVMGATNRPQ---------------------------------------------------ELD-EAVLRRFIKRVYVSL 281 (389)
T ss_dssp EEEEEESCGG---------------------------------------------------GCC-HHHHTTCCEEEECCC
T ss_pred EEEEecCCch---------------------------------------------------hcC-HHHHcCcceEEEcCC
Confidence 8999999311 122 778889988888888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
++.++...|+...+.. ....+++++++.|+. ....+..+.++..+......
T Consensus 282 p~~~~r~~il~~~~~~----------~~~~l~~~~~~~la~-~~~g~~~~~l~~L~~~a~~~ 332 (389)
T 3vfd_A 282 PNEETRLLLLKNLLCK----------QGSPLTQKELAQLAR-MTDGYSGSDLTALAKDAALG 332 (389)
T ss_dssp CCHHHHHHHHHHHHTT----------SCCCSCHHHHHHHHH-HTTTCCHHHHHHHHHHHTTH
T ss_pred cCHHHHHHHHHHHHHh----------cCCCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHHH
Confidence 8999999887665532 123467888888875 44444555666655544333
No 151
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.30 E-value=4.2e-11 Score=122.77 Aligned_cols=203 Identities=17% Similarity=0.196 Sum_probs=132.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC---CC-CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENG---WT-DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~---~~-~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|++.+++.+...+...... +. ....+..++|+||+|+|||.+++.++..+. .+|+.++++.+...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~~~~l~~~--- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG----ATFFSISASSLTSK--- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEEGGGGCCS---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEehHHhhcc---
Confidence 35889999999998877643111 00 012345899999999999999999998873 45888888765332
Q ss_pred HhhhcCCCCCccCCC--CchhhHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEecC
Q psy1308 344 AKLIGAPPGYLGHDD--GGQLTKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 344 ~~llg~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
|.|... ...+....+....+||||||||.+.+ .+++.|+..++..... ...
T Consensus 157 ---------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~ 220 (357)
T 3d8b_A 157 ---------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SED 220 (357)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCC
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCC
Confidence 111100 11233444556789999999988733 4677788887743211 124
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
+++||+|||... .+. +.+++|++..+.+
T Consensus 221 ~v~vI~atn~~~---------------------------------------------------~l~-~~l~~Rf~~~i~i 248 (357)
T 3d8b_A 221 RILVVGATNRPQ---------------------------------------------------EID-EAARRRLVKRLYI 248 (357)
T ss_dssp CEEEEEEESCGG---------------------------------------------------GBC-HHHHTTCCEEEEC
T ss_pred CEEEEEecCChh---------------------------------------------------hCC-HHHHhhCceEEEe
Confidence 678999998311 022 6777899888888
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
.+++.++..+|+...+.. . .+.+++++++.|++ ....+..+.|+..+.+.....+
T Consensus 249 ~~p~~~~r~~il~~~~~~--------~--~~~l~~~~l~~la~-~t~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 249 PLPEASARKQIVINLMSK--------E--QCCLSEEEIEQIVQ-QSDAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp CCCCHHHHHHHHHHHHHT--------S--CBCCCHHHHHHHHH-HTTTCCHHHHHHHHHHHHTHHH
T ss_pred CCcCHHHHHHHHHHHHhh--------c--CCCccHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 888999888887665531 1 23467888888875 3333445677777766555444
No 152
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=7.3e-12 Score=127.75 Aligned_cols=196 Identities=24% Similarity=0.288 Sum_probs=123.9
Q ss_pred hHhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc
Q psy1308 268 DRIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
..+.|.+.+++.+.+.+... ..+.. .|.-+||+||||||||.+|+++|..+.. +|+.++.+.+..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLAkAiA~e~~~----~fi~v~~s~l~s 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLAKAVANQTSA----TFLRIVGSELIQ 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHHHHHHHHHTC----EEEEEESGGGCC
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHHHHHHHHhCC----CEEEEEHHHhhh
Confidence 35778888888887776542 12222 2458999999999999999999998854 588888776532
Q ss_pred cchhHhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccC-----------HHHHH---HHHHhhccceeecCC
Q psy1308 340 KHEVAKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAH-----------PDVLT---VLLQLFDEGRLTDGK 403 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~-----------~~~~~---~Ll~~~~~~~~~~~~ 403 (607)
.|+|.... ..+....+....+||||||||.+- ..+.. .||..++.- +
T Consensus 255 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~---~-- 317 (437)
T 4b4t_I 255 ------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF---D-- 317 (437)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC---C--
T ss_pred ------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc---C--
Confidence 23332111 123445556678999999999762 23344 444444411 1
Q ss_pred CcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc-
Q psy1308 404 GKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG- 482 (607)
Q Consensus 404 g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~- 482 (607)
...+++||+|||.... +- |.|+.
T Consensus 318 ----~~~~ViVIaATNrpd~---------------------------------------------------LD-pALlRp 341 (437)
T 4b4t_I 318 ----DRGDVKVIMATNKIET---------------------------------------------------LD-PALIRP 341 (437)
T ss_dssp ----CSSSEEEEEEESCSTT---------------------------------------------------CC-TTSSCT
T ss_pred ----CCCCEEEEEeCCChhh---------------------------------------------------cC-HHHhcC
Confidence 1257899999993110 11 66664
Q ss_pred -cccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 483 -RINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 483 -ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
|||..|.|.+++.++..+|++..+.. .. +++++ ++.|++ ....+.++.|++.+..+...++
T Consensus 342 GRfD~~I~v~lPd~~~R~~Il~~~l~~--------~~----l~~dvdl~~LA~-~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 342 GRIDRKILFENPDLSTKKKILGIHTSK--------MN----LSEDVNLETLVT-TKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp TTEEEEECCCCCCHHHHHHHHHHHHTT--------SC----BCSCCCHHHHHH-HCCSCCHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEcCCcCHHHHHHHHHHHhcC--------CC----CCCcCCHHHHHH-hCCCCCHHHHHHHHHHHHHHHH
Confidence 99998888888999999997765531 11 22222 456654 3334455678887776655544
No 153
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.28 E-value=6.9e-12 Score=126.66 Aligned_cols=185 Identities=21% Similarity=0.283 Sum_probs=129.5
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~ll 347 (607)
.++|++..++.+...+... +..+++|+||+|+|||.+++.+++.+.... ..+++.++++...+...+...+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERK--------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTT--------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHH
T ss_pred HHhCCHHHHHHHHHHHhCC--------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHH
Confidence 4789998888776655431 122489999999999999999999875432 2357777776543322211111
Q ss_pred cCCCCCccCCCCchhhHHH-----hhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcch
Q psy1308 348 GAPPGYLGHDDGGQLTKRL-----KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLAS 422 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~-----~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~ 422 (607)
.... ...++.++++||++.++++.++.|++++++. ..+++||+++|...
T Consensus 90 ---------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 90 ---------------KEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILSCNYVS 143 (319)
T ss_dssp ---------------HHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-----------SSSEEEEEEESCGG
T ss_pred ---------------HHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-----------CCCCeEEEEeCChh
Confidence 1111 1245789999999999999999999999852 24678899888210
Q ss_pred HHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHH
Q psy1308 423 NEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLV 502 (607)
Q Consensus 423 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~ 502 (607)
.+. +.+.+|+. ++.|.|++.+++..++
T Consensus 144 ---------------------------------------------------~l~-~~l~sr~~-~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 144 ---------------------------------------------------RII-EPIQSRCA-VFRFKPVPKEAMKKRL 170 (319)
T ss_dssp ---------------------------------------------------GSC-HHHHTTCE-EEECCCCCHHHHHHHH
T ss_pred ---------------------------------------------------hcc-hHHHhhCe-EEEecCCCHHHHHHHH
Confidence 122 77888885 7899999999998887
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 503 CRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 503 ~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
...+. ..+ +.+++++++.|+. .++++.|.+.+.+++..
T Consensus 171 ~~~~~--------~~~--~~i~~~~l~~l~~--~~~G~~r~~~~~l~~~~ 208 (319)
T 2chq_A 171 LEICE--------KEG--VKITEDGLEALIY--ISGGDFRKAINALQGAA 208 (319)
T ss_dssp HHHHH--------TTC--CCBCHHHHHHHHH--TTTTCHHHHHHHHHHHH
T ss_pred HHHHH--------HcC--CCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 65543 123 3589999999983 45788898888887643
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=2e-11 Score=123.73 Aligned_cols=189 Identities=18% Similarity=0.246 Sum_probs=128.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~ll 347 (607)
.++|++..++.+...+.... +.+++|+||+|+|||.+++.+++.+.... ...++.++++...+...+...+
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~--------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGS--------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKV 97 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHH
T ss_pred HhhCCHHHHHHHHHHHHcCC--------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHH
Confidence 58899999999888776532 22599999999999999999999875431 2346667765432221111111
Q ss_pred cCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
... . ....+....+.++++||++.++++.++.|++++++. ..+++||+++|...
T Consensus 98 ~~~---~-------~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~i~~~~~~~----- 151 (327)
T 1iqp_A 98 KEF---A-------RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-----------SSNVRFILSCNYSS----- 151 (327)
T ss_dssp HHH---H-------HSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESCGG-----
T ss_pred HHH---H-------hhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-----------CCCCeEEEEeCCcc-----
Confidence 100 0 000012245789999999999999999999999853 14677888887211
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~ 507 (607)
.+. +.+.+|+. .+.|.|++.+++..++...+.
T Consensus 152 ----------------------------------------------~l~-~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 152 ----------------------------------------------KII-EPIQSRCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp ----------------------------------------------GSC-HHHHHTEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------ccC-HHHHhhCc-EEEecCCCHHHHHHHHHHHHH
Confidence 122 67777875 789999999999888665543
Q ss_pred HHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 508 FWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 508 ~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
..++ .++++++++|+. + +.++.|.+.+.++..
T Consensus 184 --------~~~~--~~~~~~~~~l~~-~-~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 184 --------NEGL--ELTEEGLQAILY-I-AEGDMRRAINILQAA 215 (327)
T ss_dssp --------TTTC--EECHHHHHHHHH-H-HTTCHHHHHHHHHHH
T ss_pred --------hcCC--CCCHHHHHHHHH-H-CCCCHHHHHHHHHHH
Confidence 1233 589999999975 2 367788877777654
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=9.2e-12 Score=127.75 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=128.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccC--cCCceEEeecccccccchhHhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRD--KKEAFIRLDMSEYQEKHEVAKL 346 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~--~~~~~~~l~~a~~~~~~~~~~l 346 (607)
.++|++..++.+...+.... +.+++|+||+|+|||.+++.+++.+... ....+..++++...+...+...
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~--------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSAN--------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK 109 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTT--------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH
T ss_pred HhhCCHHHHHHHHHHHhcCC--------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHH
Confidence 58899998888776664321 2248999999999999999999987531 1345667777654332222221
Q ss_pred hcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHH
Q psy1308 347 IGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426 (607)
Q Consensus 347 lg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~ 426 (607)
+.......................+.+|+|||++.+++..++.|++++++.. .+++||+++|...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~~~~---- 174 (353)
T 1sxj_D 110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-----------GVTRFCLICNYVT---- 174 (353)
T ss_dssp HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEESCGG----
T ss_pred HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-----------CCceEEEEeCchh----
Confidence 1100000000000000001112346799999999999999999999998642 3567888877211
Q ss_pred HHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHH
Q psy1308 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCREL 506 (607)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l 506 (607)
.+. |.+.+|+. .+.|.|++.+++..++...+
T Consensus 175 -----------------------------------------------~l~-~~l~sR~~-~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 175 -----------------------------------------------RII-DPLASQCS-KFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp -----------------------------------------------GSC-HHHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred -----------------------------------------------hCc-chhhccCc-eEEeCCCCHHHHHHHHHHHH
Confidence 022 67788885 78899999999988876654
Q ss_pred HHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 507 NFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 507 ~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
.. .+ +.++++++++|+. +.+ ++.|.+.+.++...
T Consensus 206 ~~--------~~--~~i~~~~l~~l~~-~~~-G~~r~~~~~l~~~~ 239 (353)
T 1sxj_D 206 EQ--------EN--VKCDDGVLERILD-ISA-GDLRRGITLLQSAS 239 (353)
T ss_dssp HT--------TT--CCCCHHHHHHHHH-HTS-SCHHHHHHHHHHTH
T ss_pred HH--------hC--CCCCHHHHHHHHH-HcC-CCHHHHHHHHHHHH
Confidence 31 13 3578999999986 444 67888777776543
No 156
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.6e-11 Score=127.04 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=124.4
Q ss_pred hHhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc
Q psy1308 268 DRIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
..+.|.+.+++.+.+.+... ..+.. .|..+||+||||||||.+|+++|..+.. +|+.++++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAkAiA~e~~~----~f~~v~~s~l~~ 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLARACAAQTNA----TFLKLAAPQLVQ 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGGGGCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHHHHHHHhCC----CEEEEehhhhhh
Confidence 45788888888877665432 12222 2458999999999999999999998744 588888876532
Q ss_pred cchhHhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCcc-----------CHHH---HHHHHHhhccceeecCC
Q psy1308 340 KHEVAKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKA-----------HPDV---LTVLLQLFDEGRLTDGK 403 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~-----------~~~~---~~~Ll~~~~~~~~~~~~ 403 (607)
.|+|.... ..+....+....+||||||||.+ +..+ ...||..++.-.
T Consensus 254 ------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~----- 316 (434)
T 4b4t_M 254 ------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS----- 316 (434)
T ss_dssp ------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----
T ss_pred ------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----
Confidence 23332111 12334445556799999999875 1223 345666665211
Q ss_pred CcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc-
Q psy1308 404 GKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG- 482 (607)
Q Consensus 404 g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~- 482 (607)
...+++||+|||... .+- |.|+.
T Consensus 317 ----~~~~ViVIaaTNrp~---------------------------------------------------~LD-~AllRp 340 (434)
T 4b4t_M 317 ----SDDRVKVLAATNRVD---------------------------------------------------VLD-PALLRS 340 (434)
T ss_dssp ----SSCSSEEEEECSSCC---------------------------------------------------CCC-TTTCST
T ss_pred ----CCCCEEEEEeCCCch---------------------------------------------------hcC-HhHhcC
Confidence 124678999999310 011 66655
Q ss_pred -cccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 483 -RINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 483 -ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
|||..+.|.+++.++..+|++..+.. + . +++++ ++.|++ ....+.++.|++.+..+...++
T Consensus 341 GRfD~~I~i~lPd~~~R~~Il~~~~~~----~----~----~~~dvdl~~lA~-~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 341 GRLDRKIEFPLPSEDSRAQILQIHSRK----M----T----TDDDINWQELAR-STDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp TSEEEEEECCCCCHHHHHHHHHHHHHH----S----C----BCSCCCHHHHHH-HCSSCCHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEeCCcCHHHHHHHHHHHhcC----C----C----CCCcCCHHHHHH-hCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999888999999998766542 1 1 12222 455664 3334456678888877665554
No 157
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.22 E-value=3.2e-11 Score=124.26 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=121.5
Q ss_pred HhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 269 RIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.+.|.+.+++.+.+.+... ..+.. .|.-+||+||||||||.+|+++|..+.. +|+.++++.+..
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~---pprGILLyGPPGTGKTlLAkAiA~e~~~----~fi~vs~s~L~s- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGID---PPKGILLYGPPGTGKTLCARAVANRTDA----TFIRVIGSELVQ- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCSEEEECSCTTSSHHHHHHHHHHHHTC----EEEEEEGGGGCC-
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC---CCCceEeeCCCCCcHHHHHHHHHhccCC----CeEEEEhHHhhc-
Confidence 4777777777776655321 22222 2458999999999999999999998854 588888876532
Q ss_pred chhHhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccCH-----------H---HHHHHHHhhccceeecCCC
Q psy1308 341 HEVAKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAHP-----------D---VLTVLLQLFDEGRLTDGKG 404 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~~-----------~---~~~~Ll~~~~~~~~~~~~g 404 (607)
.|+|.... ..+....+....+||||||+|.+-+ . +...||..++..
T Consensus 282 -----------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~------- 343 (467)
T 4b4t_H 282 -----------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF------- 343 (467)
T ss_dssp -----------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS-------
T ss_pred -----------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc-------
Confidence 22332111 1234455666789999999997632 2 334455555421
Q ss_pred cEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--
Q psy1308 405 KTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG-- 482 (607)
Q Consensus 405 ~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~-- 482 (607)
....++++|+|||... . +- |.|+.
T Consensus 344 --~~~~~ViVIaATNrpd-------------------------------------------~--------LD-pALlRpG 369 (467)
T 4b4t_H 344 --DPRGNIKVMFATNRPN-------------------------------------------T--------LD-PALLRPG 369 (467)
T ss_dssp --CCTTTEEEEEECSCTT-------------------------------------------S--------BC-HHHHSTT
T ss_pred --CCCCcEEEEeCCCCcc-------------------------------------------c--------CC-hhhhccc
Confidence 1235788999999311 1 11 55554
Q ss_pred cccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 483 RINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 483 ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
|||..+.|.+++.++..+|++..+.. ..+.-.++ ++.|++ ....+.++.|++.+..+...++
T Consensus 370 RFD~~I~i~lPd~~~R~~Ilk~~l~~--------~~l~~dvd---l~~LA~-~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 370 RIDRKVEFSLPDLEGRANIFRIHSKS--------MSVERGIR---WELISR-LCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp TCCEEECCCCCCHHHHHHHHHHHHTT--------SCBCSSCC---HHHHHH-HCCSCCHHHHHHHHHHHHHHHH
T ss_pred cccEEEEeCCcCHHHHHHHHHHHhcC--------CCCCCCCC---HHHHHH-HCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999888999999998765531 11111122 345553 2233445668877776655444
No 158
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.21 E-value=3.5e-11 Score=124.56 Aligned_cols=196 Identities=20% Similarity=0.206 Sum_probs=124.3
Q ss_pred hHhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc
Q psy1308 268 DRIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
..+.|.+.+++.+.+.+... ..+.. .|.-+||+||||||||.+|+++|..+.. +|+.++++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---~prGvLL~GPPGtGKTllAkAiA~e~~~----~~~~v~~s~l~s 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIK---PPKGVLLYGPPGTGKTLLAKAVAATIGA----NFIFSPASGIVD 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGGGTCC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeEEEECCCCCcHHHHHHHHHHHhCC----CEEEEehhhhcc
Confidence 35778888888877766432 12222 2448999999999999999999998854 488888876532
Q ss_pred cchhHhhhcCCCCCccCCC--CchhhHHHhhCCCeEEEEecCCccC-----------HH---HHHHHHHhhccceeecCC
Q psy1308 340 KHEVAKLIGAPPGYLGHDD--GGQLTKRLKKCPNAVVLFDEVDKAH-----------PD---VLTVLLQLFDEGRLTDGK 403 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEiek~~-----------~~---~~~~Ll~~~~~~~~~~~~ 403 (607)
.|+|... -..+....+....+||||||||.+- .. +...||..++.-.
T Consensus 254 ------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----- 316 (437)
T 4b4t_L 254 ------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD----- 316 (437)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----
T ss_pred ------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----
Confidence 1222111 1123445566678999999999752 12 3455666665211
Q ss_pred CcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--
Q psy1308 404 GKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL-- 481 (607)
Q Consensus 404 g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~-- 481 (607)
...+++||+|||... .+- |.|+
T Consensus 317 ----~~~~vivI~ATNrp~---------------------------------------------------~LD-pAllRp 340 (437)
T 4b4t_L 317 ----NLGQTKIIMATNRPD---------------------------------------------------TLD-PALLRP 340 (437)
T ss_dssp ----CTTSSEEEEEESSTT---------------------------------------------------SSC-TTTTST
T ss_pred ----CCCCeEEEEecCCch---------------------------------------------------hhC-HHHhCC
Confidence 125688999999310 011 5554
Q ss_pred ccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 482 GRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 482 ~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
+|||..|.|.+++.++..+|++..+... . .++++ ++.|++ ....+.++.|++.+..+...++
T Consensus 341 GRfD~~I~i~lPd~~~R~~Il~~~~~~~--------~----~~~d~dl~~lA~-~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 341 GRLDRKVEIPLPNEAGRLEIFKIHTAKV--------K----KTGEFDFEAAVK-MSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp TSEEEEECCCCCCHHHHHHHHHHHHHTS--------C----BCSCCCHHHHHH-TCCSCCHHHHHHHHHHHHHHHH
T ss_pred CccceeeecCCcCHHHHHHHHHHHhcCC--------C----CCcccCHHHHHH-hCCCCCHHHHHHHHHHHHHHHH
Confidence 4699999988889999999987665421 1 11111 455664 3344556678887776655443
No 159
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.21 E-value=2.2e-10 Score=114.44 Aligned_cols=204 Identities=19% Similarity=0.233 Sum_probs=130.7
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC---CCC-CCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENG---WTD-DDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~---~~~-~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|++.+++.+...+...... +.. ...+..++|+||+|+|||.+++.++..+. .+|+.++++.....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~~~~l~~~--- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS----ATFLNISAASLTSK--- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEESTTTSSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEeeHHHHhhc---
Confidence 35889999999988877543210 000 11244899999999999999999998873 45888888665321
Q ss_pred HhhhcCCCCCccCC--CCchhhHHHhhCCCeEEEEecCCccC-----------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 344 AKLIGAPPGYLGHD--DGGQLTKRLKKCPNAVVLFDEVDKAH-----------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 344 ~~llg~~~g~~g~~--~~~~l~~~~~~~~~~vl~lDEiek~~-----------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
+.|.. ....+.........++|||||++.+. ..+++.|+..++..... ....
T Consensus 94 ---------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~ 158 (297)
T 3b9p_A 94 ---------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN------PDGD 158 (297)
T ss_dssp ---------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------
T ss_pred ---------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc------CCCC
Confidence 12210 01123344555678999999998873 45677788777643211 1124
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
+++||++||... .+. +.+.+|++..+.+
T Consensus 159 ~v~vi~~tn~~~---------------------------------------------------~l~-~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 159 RIVVLAATNRPQ---------------------------------------------------ELD-EAALRRFTKRVYV 186 (297)
T ss_dssp CEEEEEEESCGG---------------------------------------------------GBC-HHHHHHCCEEEEC
T ss_pred cEEEEeecCChh---------------------------------------------------hCC-HHHHhhCCeEEEe
Confidence 578999998321 122 6777788888888
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
.+++.++...|+...+.. .+ ..+++++++.|+. ....+..+.|+..+++....++
T Consensus 187 ~~p~~~~r~~il~~~~~~--------~~--~~~~~~~~~~la~-~~~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 187 SLPDEQTRELLLNRLLQK--------QG--SPLDTEALRRLAK-ITDGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp CCCCHHHHHHHHHHHHGG--------GS--CCSCHHHHHHHHH-HTTTCCHHHHHHHHHHHTTHHH
T ss_pred CCcCHHHHHHHHHHHHHh--------cC--CCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 888888888776655431 12 3467888888885 5555556678777766554443
No 160
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.20 E-value=1.5e-10 Score=113.30 Aligned_cols=202 Identities=19% Similarity=0.219 Sum_probs=115.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCC----CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 269 RIVGQESAINIISAAIKRKENGWT----DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~----~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.++|++.+++.+...+........ ....|..++|+||+|+|||.+++.++..+. .+++.++++.+....
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~--- 79 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI--- 79 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS---
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc---
Confidence 477888888888776654321100 112345789999999999999999999874 358888887753211
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCcc------------CHHHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKA------------HPDVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~------------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
.+. +...-..+.........++|||||+|.+ +...+..|.++++.-. ... ...++
T Consensus 80 ------~~~-~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~----~~~~~ 146 (262)
T 2qz4_A 80 ------GGL-GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD--GMG----TTDHV 146 (262)
T ss_dssp ------TTH-HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH--TCC----TTCCE
T ss_pred ------cCh-hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh--CcC----CCCCE
Confidence 000 0000011223334445799999999998 3344444444443110 000 12478
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccceeee
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINEIVYF 490 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~iv~f 490 (607)
++|+|||.... + .+.+.. |++..+.+
T Consensus 147 ~vi~~tn~~~~---------------------------------------------------l-d~~l~~~~R~~~~i~i 174 (262)
T 2qz4_A 147 IVLASTNRADI---------------------------------------------------L-DGALMRPGRLDRHVFI 174 (262)
T ss_dssp EEEEEESCGGG---------------------------------------------------G-GSGGGSTTSCCEEEEC
T ss_pred EEEecCCChhh---------------------------------------------------c-CHHHhcCCcCCeEEEe
Confidence 89999983210 1 145555 89888899
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
.+++.++..+|+...+... + +..+++. ...|+. ....+..|.|++.+.+...
T Consensus 175 ~~p~~~~r~~il~~~~~~~--------~--~~~~~~~~~~~l~~-~~~g~~~~~l~~l~~~a~~ 227 (262)
T 2qz4_A 175 DLPTLQERREIFEQHLKSL--------K--LTQSSTFYSQRLAE-LTPGFSGADIANICNEAAL 227 (262)
T ss_dssp CSCCHHHHHHHHHHHHHHT--------T--CCBTHHHHHHHHHH-TCTTCCHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHhC--------C--CCcchhhHHHHHHH-HCCCCCHHHHHHHHHHHHH
Confidence 9999999999888777532 1 2233333 355654 3333334667766665443
No 161
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.20 E-value=2.1e-10 Score=119.20 Aligned_cols=216 Identities=16% Similarity=0.210 Sum_probs=140.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCc--eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh---
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPL--VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV--- 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~--~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~--- 343 (607)
.++|++..++.+...+.....+. .+. .++++||+|+|||.+++.++..+.......++.++|+........
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~----~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNP----GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHST----TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCC----CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 58899999999988887654331 133 688999999999999999999875432346788887765433222
Q ss_pred -HhhhcCCCCCccCCCC---chhhHHHhh-CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 344 -AKLIGAPPGYLGHDDG---GQLTKRLKK-CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 344 -~~llg~~~g~~g~~~~---~~l~~~~~~-~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
...+|......+.... ..+...+.. ....+|+|||++.++++.+..|+.++++..-. ...++.||++|
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~-------~~~~~~iI~~~ 166 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKL-------GAFRIALVIVG 166 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHH-------SSCCEEEEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCC-------CcCCEEEEEEE
Confidence 2233332211111110 012222333 33679999999999999999999999743100 01367788888
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccc-eeeeccCCHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE-IVYFLPFSKSE 497 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~-iv~f~pl~~~~ 497 (607)
|... . ...+. +.+.+|+.. .+.|.|++.++
T Consensus 167 ~~~~--~----------------------------------------------~~~l~-~~~~~r~~~~~i~~~pl~~~~ 197 (389)
T 1fnn_A 167 HNDA--V----------------------------------------------LNNLD-PSTRGIMGKYVIRFSPYTKDQ 197 (389)
T ss_dssp SSTH--H----------------------------------------------HHTSC-HHHHHHHTTCEEECCCCBHHH
T ss_pred CCch--H----------------------------------------------HHHhC-HHhhhcCCCceEEeCCCCHHH
Confidence 7321 0 11133 666777765 78999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCC--------CCCccchhHHHHHHHH
Q psy1308 498 LHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDV--------HYGARSIKHEVERQVV 553 (607)
Q Consensus 498 ~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~--------~~GaR~L~~~i~~~i~ 553 (607)
+.+++...+... ... ..+++++++.+.. +.| +++.|.+.+.+++...
T Consensus 198 ~~~~l~~~~~~~----~~~----~~~~~~~~~~l~~-~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 198 IFDILLDRAKAG----LAE----GSYSEDILQMIAD-ITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HHHHHHHHHHHH----BCT----TSSCHHHHHHHHH-HHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----cCC----CCCCHHHHHHHHH-HHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 999987766421 111 1578999999875 333 6778888888876544
No 162
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.20 E-value=7.6e-11 Score=119.75 Aligned_cols=201 Identities=19% Similarity=0.207 Sum_probs=129.7
Q ss_pred HHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc
Q psy1308 262 LEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341 (607)
Q Consensus 262 L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~ 341 (607)
+...+...++||+..++.+...+... .+++|+||+|+|||.+++.++..+.. ++..++++....
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~~----------~~vll~G~pGtGKT~la~~la~~~~~----~~~~i~~~~~~~-- 84 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICTG----------GHILLEGVPGLAKTLSVNTLAKTMDL----DFHRIQFTPDLL-- 84 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHHT----------CCEEEESCCCHHHHHHHHHHHHHTTC----CEEEEECCTTCC--
T ss_pred HHHHhccceeCcHHHHHHHHHHHHcC----------CeEEEECCCCCcHHHHHHHHHHHhCC----CeEEEecCCCCC--
Confidence 34445567899999998887776542 25899999999999999999998743 478888753322
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhC--CCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEe-cCceEEEEec
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKC--PNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIE-CKDAIFVMTS 418 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~--~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~-~~~~~iI~ts 418 (607)
...++|...- +. ..+... +... ..+++||||++++++..++.|++.++++.++.. |.... ..++++|+|+
T Consensus 85 -~~~l~g~~~~--~~-~~~~~~--~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~~~viat~ 157 (331)
T 2r44_A 85 -PSDLIGTMIY--NQ-HKGNFE--VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNPFLVLATQ 157 (331)
T ss_dssp -HHHHHEEEEE--ET-TTTEEE--EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSSCEEEEEE
T ss_pred -hhhcCCceee--cC-CCCceE--eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCCEEEEEec
Confidence 2233432110 00 001100 0111 147999999999999999999999999988774 44333 3467788887
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~ 498 (607)
|-... .. ...+. +.|++||+..+.+.+++.++.
T Consensus 158 np~~~-----------------------~~-----------------------~~~l~-~~l~~Rf~~~i~i~~p~~~~~ 190 (331)
T 2r44_A 158 NPVEQ-----------------------EG-----------------------TYPLP-EAQVDRFMMKIHLTYLDKESE 190 (331)
T ss_dssp CTTCC-----------------------SC-----------------------CCCCC-HHHHTTSSEEEECCCCCHHHH
T ss_pred CCCcc-----------------------cC-----------------------cccCC-HHHHhheeEEEEcCCCCHHHH
Confidence 72100 00 00133 889999987788888999999
Q ss_pred HHHHHHHHHHH-------------HHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 499 HTLVCRELNFW-------------AKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 499 ~~i~~~~l~~~-------------~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.+|+....... ..++... ...+.+++++++++++
T Consensus 191 ~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~v~~~~~~~~~i~~ 237 (331)
T 2r44_A 191 LEVMRRVSNMNFNYQVQKIVSKNDVLEIRNE-INKVTISESLEKYIIE 237 (331)
T ss_dssp HHHHHHHHCTTCCCCCCCCSCHHHHHHHHHH-HHTCBCCHHHHHHHHH
T ss_pred HHHHHhccccCcchhccccCCHHHHHHHHHH-hccCCCCHHHHHHHHH
Confidence 99987764320 0000000 1135688999988863
No 163
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.19 E-value=1.4e-10 Score=115.12 Aligned_cols=201 Identities=20% Similarity=0.208 Sum_probs=123.6
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCC-----CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRKENGW-----TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~-----~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
..++|++..++.+...+....... .....+..++|+||+|+|||.+++.++..+. .+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~----~~~~~v~~~~~~~~-- 90 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN----ATFIRVVGSELVKK-- 90 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT----CEEEEEEGGGGCCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEehHHHHHh--
Confidence 357888888888877765431110 0011244799999999999999999998874 35888887655322
Q ss_pred hHhhhcCCCCCccCCC--CchhhHHHhhCCCeEEEEecCCcc-----------CHHHHHHHHHhhccceeecCCCcEEec
Q psy1308 343 VAKLIGAPPGYLGHDD--GGQLTKRLKKCPNAVVLFDEVDKA-----------HPDVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEiek~-----------~~~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
+.|... ...+.........++|||||++.+ .+..+..|+++++...-... .
T Consensus 91 ----------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~ 154 (285)
T 3h4m_A 91 ----------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA------R 154 (285)
T ss_dssp ----------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS------S
T ss_pred ----------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC------C
Confidence 111100 112334455566789999999997 66778888887764211111 1
Q ss_pred CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccce
Q psy1308 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINEI 487 (607)
Q Consensus 410 ~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~i 487 (607)
.+++||+|||... .+. +.++. |++.+
T Consensus 155 ~~~~vI~ttn~~~---------------------------------------------------~l~-~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 155 GDVKIIGATNRPD---------------------------------------------------ILD-PAILRPGRFDRI 182 (285)
T ss_dssp SSEEEEEECSCGG---------------------------------------------------GBC-HHHHSTTSEEEE
T ss_pred CCEEEEEeCCCch---------------------------------------------------hcC-HHHcCCCcCCeE
Confidence 4688999998310 011 55555 88888
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHH
Q psy1308 488 VYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 488 v~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
+.+.+++.++..+|+...+.. .+.. ++..+..|+. ....+..|.++..+.+....
T Consensus 183 i~~~~p~~~~r~~il~~~~~~--------~~~~---~~~~~~~l~~-~~~g~~~~~i~~l~~~a~~~ 237 (285)
T 3h4m_A 183 IEVPAPDEKGRLEILKIHTRK--------MNLA---EDVNLEEIAK-MTEGCVGAELKAICTEAGMN 237 (285)
T ss_dssp EECCCCCHHHHHHHHHHHHTT--------SCBC---TTCCHHHHHH-HCTTCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHhc--------CCCC---CcCCHHHHHH-HcCCCCHHHHHHHHHHHHHH
Confidence 999999999999998655431 1111 2222444543 23334556677666554443
No 164
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.7e-11 Score=124.19 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=122.5
Q ss_pred hHhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc
Q psy1308 268 DRIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~ 339 (607)
..+.|.+..++.+.+.+... ..|.. .|--+||+||||||||.+|+++|..+.. +|+.++++.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~prGiLL~GPPGtGKT~lakAiA~~~~~----~~~~v~~~~l~~ 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPRGVLLYGPPGTGKTMLVKAVANSTKA----AFIRVNGSEFVH 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTTTHHHHHHHHHHHHTC----EEEEEEGGGTCC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCceEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecchhhc
Confidence 35778888888777666432 12322 2447999999999999999999998854 599998876532
Q ss_pred cchhHhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccC-----------H---HHHHHHHHhhccceeecCC
Q psy1308 340 KHEVAKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAH-----------P---DVLTVLLQLFDEGRLTDGK 403 (607)
Q Consensus 340 ~~~~~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~-----------~---~~~~~Ll~~~~~~~~~~~~ 403 (607)
.|+|.... ..+....+....+|+||||+|.+- . .+...||..++.-.
T Consensus 245 ------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~----- 307 (428)
T 4b4t_K 245 ------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD----- 307 (428)
T ss_dssp ------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----
T ss_pred ------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----
Confidence 12221111 123444556678999999998641 1 24566777666211
Q ss_pred CcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc-
Q psy1308 404 GKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG- 482 (607)
Q Consensus 404 g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~- 482 (607)
...+++||+|||... . + .|.|+.
T Consensus 308 ----~~~~v~vI~aTN~~~-------------------------------------------~--------L-D~AllRp 331 (428)
T 4b4t_K 308 ----QSTNVKVIMATNRAD-------------------------------------------T--------L-DPALLRP 331 (428)
T ss_dssp ----SSCSEEEEEEESCSS-------------------------------------------S--------C-CHHHHSS
T ss_pred ----CCCCEEEEEecCChh-------------------------------------------h--------c-ChhhhcC
Confidence 125689999999311 0 1 155554
Q ss_pred -cccceeeec-cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHHHHH
Q psy1308 483 -RINEIVYFL-PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVVSQL 556 (607)
Q Consensus 483 -ri~~iv~f~-pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~~~l 556 (607)
|||..|.|. +.+.++...|+...+.. .. +++++ ++.|+. -...+.++.|++.+..+...++
T Consensus 332 GRfd~~I~~p~lPd~~~R~~Il~~~~~~--------~~----l~~~~dl~~lA~-~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 332 GRLDRKIEFPSLRDRRERRLIFGTIASK--------MS----LAPEADLDSLII-RNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp SSEEEEEECCSSCCHHHHHHHHHHHHHS--------SC----BCTTCCHHHHHH-HTTTCCHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHhcC--------CC----CCcccCHHHHHH-HCCCCCHHHHHHHHHHHHHHHH
Confidence 899888885 45888888887655531 11 22222 566664 2333455678888876655544
No 165
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.18 E-value=4.9e-11 Score=126.52 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=128.3
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC-----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 269 RIVGQESAINIISAAIKRKENG-----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~-----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
.++|++..++.+...+...... ......|..++|+||+|+|||.++++++..+ ..+|+.++|+.+..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn~~~l~~---- 276 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMS---- 276 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEEHHHHHT----
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEEchHhhh----
Confidence 5889999999888777543110 0001124579999999999999999999876 44699999876542
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEecCce
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIECKDA 412 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~~~~~ 412 (607)
.++|...+ .-..+.........++|||||||.+.+ .++..|+.+++... ...++
T Consensus 277 -~~~g~~~~-----~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~---------~~~~v 341 (489)
T 3hu3_A 277 -KLAGESES-----NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK---------QRAHV 341 (489)
T ss_dssp -SCTTHHHH-----HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC---------TTSCE
T ss_pred -hhcchhHH-----HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc---------cCCce
Confidence 12221100 001122233444568999999966543 78999999998431 12578
Q ss_pred EEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccceeee
Q psy1308 413 IFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINEIVYF 490 (607)
Q Consensus 413 ~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~iv~f 490 (607)
+||+|||.... +. +.+.. ||+..+.+
T Consensus 342 ~vIaaTn~~~~---------------------------------------------------Ld-~al~r~gRf~~~i~i 369 (489)
T 3hu3_A 342 IVMAATNRPNS---------------------------------------------------ID-PALRRFGRFDREVDI 369 (489)
T ss_dssp EEEEEESCGGG---------------------------------------------------BC-GGGGSTTSSCEEEEC
T ss_pred EEEEecCCccc---------------------------------------------------cC-HHHhCCCcCceEEEe
Confidence 99999993210 11 45554 78888999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHH
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLA 557 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~ 557 (607)
.+++.++..+|+...+.. ..+. .+..++.|+. ....+..+.|+..+.+....++.
T Consensus 370 ~~P~~~eR~~IL~~~~~~----------~~l~-~~~~l~~la~-~t~g~s~~dL~~L~~~A~~~a~r 424 (489)
T 3hu3_A 370 GIPDATGRLEILQIHTKN----------MKLA-DDVDLEQVAN-ETHGHVGADLAALCSEAALQAIR 424 (489)
T ss_dssp CCCCHHHHHHHHHHHTTT----------SCBC-TTCCHHHHHH-TCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc----------CCCc-chhhHHHHHH-HccCCcHHHHHHHHHHHHHHHHH
Confidence 999999999987655431 1111 2223455654 44455567788777766555543
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.17 E-value=2.6e-10 Score=109.86 Aligned_cols=195 Identities=16% Similarity=0.192 Sum_probs=122.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++|++..++.+...+.... .|..++++||+|+|||.+++.+++.+.... ......+.... ....+..
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~ 91 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGR-------IHHAYLFSGTRGVGKTSIARLLAKGLNCET--GITATPCGVCD---NCREIEQ 91 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTC-------CCSEEEEECSTTSCHHHHHHHHHHHHHCTT--CSCSSCCSCSH---HHHHHHT
T ss_pred HHhCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCC--CCCCCCCcccH---HHHHHhc
Confidence 58899999998888876532 133789999999999999999998875421 11100111000 0000000
Q ss_pred -CCCCCccC-----CCCchhhHHHhh-------CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEE
Q psy1308 349 -APPGYLGH-----DDGGQLTKRLKK-------CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFV 415 (607)
Q Consensus 349 -~~~g~~g~-----~~~~~l~~~~~~-------~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI 415 (607)
..+..... .....+...++. ....+|+|||++.++++.++.|++.+++. ..++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i 160 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFL 160 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------CTTEEEE
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-----------CCceEEE
Confidence 00000000 000112222222 23589999999999999999999999742 2467888
Q ss_pred EecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCH
Q psy1308 416 MTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSK 495 (607)
Q Consensus 416 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~ 495 (607)
++|+... .+. +.+.+|+ ..+.+.|++.
T Consensus 161 ~~t~~~~---------------------------------------------------~~~-~~l~~r~-~~i~l~~l~~ 187 (250)
T 1njg_A 161 LATTDPQ---------------------------------------------------KLP-VTILSRC-LQFHLKALDV 187 (250)
T ss_dssp EEESCGG---------------------------------------------------GSC-HHHHTTS-EEEECCCCCH
T ss_pred EEeCChH---------------------------------------------------hCC-HHHHHHh-hhccCCCCCH
Confidence 8887210 022 5666775 5788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 496 SELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 496 ~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
+++.+++...+.. .+ +.+++++++.|++ +. .++.|.+.+.+++.
T Consensus 188 ~e~~~~l~~~~~~--------~~--~~~~~~~~~~l~~-~~-~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 188 EQIRHQLEHILNE--------EH--IAHEPRALQLLAR-AA-EGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHHHHHHHHHH--------TT--CCBCHHHHHHHHH-HH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------cC--CCCCHHHHHHHHH-Hc-CCCHHHHHHHHHHH
Confidence 9999987766542 12 3578899988875 32 56788888777654
No 167
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.17 E-value=1.4e-10 Score=113.31 Aligned_cols=200 Identities=17% Similarity=0.218 Sum_probs=122.7
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC--CC--CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 268 DRIVGQESAINIISAAIKRKENG--WT--DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~--~~--~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
..++|++.+++.+...+...... +. ....|..++++||+|+|||.+++.++..+. .+++.++++.+...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~i~~~~~~~~--- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK----VPFFTISGSDFVEM--- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT----CCEEEECSCSSTTS---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----CCEEEEeHHHHHHH---
Confidence 35788888888887665432210 11 112244789999999999999999998874 35888888765321
Q ss_pred HhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH--------------HHHHHHHHhhccceeecCCCcEEec
Q psy1308 344 AKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP--------------DVLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~--------------~~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
++|... ..-..+.........+++||||||.+.+ ..++.++..++.-. ..
T Consensus 85 --~~~~~~-----~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~ 148 (257)
T 1lv7_A 85 --FVGVGA-----SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------GN 148 (257)
T ss_dssp --CCCCCH-----HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------SS
T ss_pred --hhhhhH-----HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------cC
Confidence 111100 0001122233334568999999987643 35566776665311 12
Q ss_pred CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccce
Q psy1308 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINEI 487 (607)
Q Consensus 410 ~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~i 487 (607)
.++++|+|||.... +. +.++. |++..
T Consensus 149 ~~~~vI~~tn~~~~---------------------------------------------------l~-~~l~r~~rf~~~ 176 (257)
T 1lv7_A 149 EGIIVIAATNRPDV---------------------------------------------------LD-PALLRPGRFDRQ 176 (257)
T ss_dssp SCEEEEEEESCTTT---------------------------------------------------SC-GGGGSTTSSCEE
T ss_pred CCEEEEEeeCCchh---------------------------------------------------CC-HHHcCCCcCCeE
Confidence 46789999993210 11 33433 78888
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCC-CccchhHHHHHHHHHHH
Q psy1308 488 VYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHY-GARSIKHEVERQVVSQL 556 (607)
Q Consensus 488 v~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~-GaR~L~~~i~~~i~~~l 556 (607)
+.+.+++.++..+|+...+.. . .+++++ ...++ +.|++ ++|.|++.+++....+.
T Consensus 177 i~i~~P~~~~r~~il~~~~~~--------~----~l~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 177 VVVGLPDVRGREQILKVHMRR--------V----PLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAA 233 (257)
T ss_dssp EECCCCCHHHHHHHHHHHHTT--------S----CBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHhc--------C----CCCccccHHHHH--HHcCCCCHHHHHHHHHHHHHHHH
Confidence 888888988888887655431 1 133343 45555 45665 99999999988766543
No 168
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=1.2e-10 Score=120.89 Aligned_cols=210 Identities=20% Similarity=0.221 Sum_probs=134.9
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccC------c-CCceEEeeccccc-c
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRD------K-KEAFIRLDMSEYQ-E 339 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~------~-~~~~~~l~~a~~~-~ 339 (607)
..++|++..++.+...+.....+ ..|..++++||+|+|||.+++.+++.+... . ...++.++|.... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 46899999999998888776543 224489999999999999999999887332 1 3457888877654 2
Q ss_pred cch-----hHhhhcCCCCCccCCCCchh---hHHHhhCCCeEEEEecCCccCHHH-HHH-HHHhhccceeecCCCcEEec
Q psy1308 340 KHE-----VAKLIGAPPGYLGHDDGGQL---TKRLKKCPNAVVLFDEVDKAHPDV-LTV-LLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 340 ~~~-----~~~llg~~~g~~g~~~~~~l---~~~~~~~~~~vl~lDEiek~~~~~-~~~-Ll~~~~~~~~~~~~g~~~~~ 409 (607)
... ...+.|...++.|......+ ...+... ..+|+|||++.+...- ++. |..+++..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~~~~l~~l~~~~------------ 162 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGGDIVLYQLLRSD------------ 162 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTSHHHHHHHHTSS------------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCCceeHHHHhcCC------------
Confidence 211 23344555544443222222 2222222 3399999999987542 455 44444421
Q ss_pred CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceee
Q psy1308 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVY 489 (607)
Q Consensus 410 ~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~ 489 (607)
.+++||+|||.... ...+. +.+.+|+...+.
T Consensus 163 ~~~~iI~~t~~~~~------------------------------------------------~~~l~-~~l~sr~~~~i~ 193 (384)
T 2qby_B 163 ANISVIMISNDINV------------------------------------------------RDYME-PRVLSSLGPSVI 193 (384)
T ss_dssp SCEEEEEECSSTTT------------------------------------------------TTTSC-HHHHHTCCCEEE
T ss_pred cceEEEEEECCCch------------------------------------------------HhhhC-HHHHhcCCCeEE
Confidence 57789999982110 01122 677788877999
Q ss_pred eccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHH
Q psy1308 490 FLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 490 f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~ 551 (607)
|.|++.+++.+|+...+.. .+ . ...+++++++.+++ ....++++|.+.+.+++.
T Consensus 194 l~~l~~~~~~~il~~~~~~---~~-~----~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 194 FKPYDAEQLKFILSKYAEY---GL-I----KGTYDDEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp ECCCCHHHHHHHHHHHHHH---TS-C----TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHh---hc-c----cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999999999998877642 01 0 12467888888875 222357788776666554
No 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.15 E-value=9.1e-11 Score=118.81 Aligned_cols=174 Identities=14% Similarity=0.180 Sum_probs=116.1
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
+.+++++||+|+|||.+++.++..+... ..+++.+++..+.... ...+.. .....+...+. ..++|||
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~~~~~~-~~~~~~--------~~~~~~~~~~~--~~~vL~i 104 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDFAQAM-VEHLKK--------GTINEFRNMYK--SVDLLLL 104 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHH-HHHHHH--------TCHHHHHHHHH--TCSEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHHH-HHHHHc--------CcHHHHHHHhc--CCCEEEE
Confidence 3478999999999999999999988654 4568888876652211 111110 00111222222 3679999
Q ss_pred ecCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCc
Q psy1308 377 DEVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNL 454 (607)
Q Consensus 377 DEiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (607)
||++.++. ..|..|+.+++.-. + .+..+|++|+.....+
T Consensus 105 DEi~~l~~~~~~~~~l~~~l~~~~--~--------~~~~iii~~~~~~~~l----------------------------- 145 (324)
T 1l8q_A 105 DDVQFLSGKERTQIEFFHIFNTLY--L--------LEKQIILASDRHPQKL----------------------------- 145 (324)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHH--H--------TTCEEEEEESSCGGGC-----------------------------
T ss_pred cCcccccCChHHHHHHHHHHHHHH--H--------CCCeEEEEecCChHHH-----------------------------
Confidence 99999886 77888888776321 1 1234566655222110
Q ss_pred chhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 455 DVTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
..+. +.|.+|+. .++.+.| +.++...|+...+.. .+ +.++++++++|+
T Consensus 146 ------------------~~l~-~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~--------~~--~~l~~~~l~~l~ 195 (324)
T 1l8q_A 146 ------------------DGVS-DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE--------FN--LELRKEVIDYLL 195 (324)
T ss_dssp ------------------TTSC-HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH--------TT--CCCCHHHHHHHH
T ss_pred ------------------HHhh-hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh--------cC--CCCCHHHHHHHH
Confidence 0133 78888886 5788999 999999998776642 23 368899999998
Q ss_pred ccCCCCCCccchhHHHHHHHHH
Q psy1308 533 DGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 533 ~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
. +. +++|.+.+.+++.+..
T Consensus 196 ~-~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 196 E-NT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp H-HC--SSHHHHHHHHHHHHHH
T ss_pred H-hC--CCHHHHHHHHHHHHHc
Confidence 6 54 8999999999876654
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.14 E-value=4e-10 Score=118.48 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=124.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 269 RIVGQESAINIISAAIKRKENG----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.++|++.+++.+...+...... ......|..++|+||+|+|||.+++.++.... .+|+.++++.+...
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~----~~f~~is~~~~~~~---- 88 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN----VPFFHISGSDFVEL---- 88 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT----CCEEEEEGGGTTTC----
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCeeeCCHHHHHHH----
Confidence 5889999988887776543211 00112244689999999999999999998763 46888888766431
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH--------------HHHHHHHHhhccceeecCCCcEEecC
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP--------------DVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~--------------~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
+.|. +......+.........+||||||||.+.+ .+++.|+..++.- . ...
T Consensus 89 -~~g~-----~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~--~-------~~~ 153 (476)
T 2ce7_A 89 -FVGV-----GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF--D-------SKE 153 (476)
T ss_dssp -CTTH-----HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS--C-------GGG
T ss_pred -Hhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc--C-------CCC
Confidence 1110 000011223334445678999999998754 3567777777621 0 124
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhh--cccccee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFL--GRINEIV 488 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~--~ri~~iv 488 (607)
+++||++||.... +. |.++ +||+..+
T Consensus 154 ~viVIaaTn~~~~---------------------------------------------------Ld-~allR~gRFd~~i 181 (476)
T 2ce7_A 154 GIIVMAATNRPDI---------------------------------------------------LD-PALLRPGRFDKKI 181 (476)
T ss_dssp TEEEEEEESCGGG---------------------------------------------------SC-GGGGSTTSSCEEE
T ss_pred CEEEEEecCChhh---------------------------------------------------hc-hhhcccCcceeEe
Confidence 7889999993210 11 3444 4888888
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCc-cchhHHHHHHHHHH
Q psy1308 489 YFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGA-RSIKHEVERQVVSQ 555 (607)
Q Consensus 489 ~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~Ga-R~L~~~i~~~i~~~ 555 (607)
.+.+++.++..+|++..+.. .. +++++ ++.|+ ..|++.. |.|++.+.+.....
T Consensus 182 ~i~~Pd~~~R~~Il~~~~~~--------~~----l~~~v~l~~la--~~t~G~sgadL~~lv~~Aal~A 236 (476)
T 2ce7_A 182 VVDPPDMLGRKKILEIHTRN--------KP----LAEDVNLEIIA--KRTPGFVGADLENLVNEAALLA 236 (476)
T ss_dssp ECCCCCHHHHHHHHHHHHTT--------SC----BCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHh--------CC----CcchhhHHHHH--HhcCCCcHHHHHHHHHHHHHHH
Confidence 88888998888887654431 11 23333 56665 3455555 88998888765543
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.11 E-value=1.3e-09 Score=112.51 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=125.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhh-
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI- 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~ll- 347 (607)
.++|++..++.+...+..... |-.++|+||+|+|||.+++.+++.+.... +.....|.... ....+.
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~-------~~~~ll~G~~G~GKT~la~~la~~l~~~~--~~~~~~~~~~~---~~~~~~~ 84 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRI-------HHAYLFSGTRGVGKTSIARLLAKGLNCET--GITATPCGVCD---NCREIEQ 84 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCC-------CSEEEEESCTTSSHHHHHHHHHHHHSCTT--CSCSSCCSSSH---HHHHHHT
T ss_pred hccCcHHHHHHHHHHHHhCCC-------CeEEEEECCCCCCHHHHHHHHHHHhCCCC--CCCCCCCcccH---HHHHHhc
Confidence 488999999999888865321 23689999999999999999999875431 11111111110 011110
Q ss_pred cCCCC--------CccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEE
Q psy1308 348 GAPPG--------YLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFV 415 (607)
Q Consensus 348 g~~~g--------~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI 415 (607)
+..+. ..+.+.-..+...+.. ..+.+++|||++.++++.++.|++.+++. ..+++||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-----------~~~~~~I 153 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFL 153 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-----------CSSEEEE
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-----------CCceEEE
Confidence 00000 1111111122222222 23679999999999999999999999852 2467888
Q ss_pred EecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCH
Q psy1308 416 MTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSK 495 (607)
Q Consensus 416 ~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~ 495 (607)
++|+... .+. +.+.+|+ ..+.|.|++.
T Consensus 154 l~~~~~~---------------------------------------------------~l~-~~l~sr~-~~i~~~~l~~ 180 (373)
T 1jr3_A 154 LATTDPQ---------------------------------------------------KLP-VTILSRC-LQFHLKALDV 180 (373)
T ss_dssp EEESCGG---------------------------------------------------GSC-HHHHTTS-EEEECCCCCH
T ss_pred EEeCChH---------------------------------------------------hCc-HHHHhhe-eEeeCCCCCH
Confidence 8877210 122 6677787 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 496 SELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 496 ~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
+++.+++...+... + +.+++++++.|+. +. .++.|.+.+.+++.+
T Consensus 181 ~~~~~~l~~~~~~~--------~--~~~~~~a~~~l~~-~~-~G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 181 EQIRHQLEHILNEE--------H--IAHEPRALQLLAR-AA-EGSLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHHHHH--------T--CCBCHHHHHHHHH-HS-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------C--CCCCHHHHHHHHH-HC-CCCHHHHHHHHHHHH
Confidence 99998887765421 2 3578999998875 32 677888887777653
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.10 E-value=2.9e-10 Score=117.89 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=137.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-----CCceEEeecccccccch-
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-----KEAFIRLDMSEYQEKHE- 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-----~~~~~~l~~a~~~~~~~- 342 (607)
.++|++..++.+...+.....+ ..+..++++||+|+|||.+++.+++.+.... ...++.+++........
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRG----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSS----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 5889999999888777554222 2244789999999999999999998874321 34678888876554332
Q ss_pred ---hHhhhcCCCCCccCCCCc---hhhHHHhhC-CCeEEEEecCCccCHH--HHHHHHHhhccceeecCCCcEEecCceE
Q psy1308 343 ---VAKLIGAPPGYLGHDDGG---QLTKRLKKC-PNAVVLFDEVDKAHPD--VLTVLLQLFDEGRLTDGKGKTIECKDAI 413 (607)
Q Consensus 343 ---~~~llg~~~g~~g~~~~~---~l~~~~~~~-~~~vl~lDEiek~~~~--~~~~Ll~~~~~~~~~~~~g~~~~~~~~~ 413 (607)
+...+|......|..... .+...+... ...+|+|||++.+... .++.|..+++....... ..+++
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~------~~~~~ 169 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD------RVWVS 169 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------CE
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC------CceEE
Confidence 223334332233321111 122222222 2569999999999876 77777777653211000 24678
Q ss_pred EEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccc-eeeecc
Q psy1308 414 FVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE-IVYFLP 492 (607)
Q Consensus 414 iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~-iv~f~p 492 (607)
+|++||... +...+. +.+.+|+.. .+.|.|
T Consensus 170 ~I~~t~~~~------------------------------------------------~~~~l~-~~l~~r~~~~~i~l~~ 200 (387)
T 2v1u_A 170 LVGITNSLG------------------------------------------------FVENLE-PRVKSSLGEVELVFPP 200 (387)
T ss_dssp EEEECSCST------------------------------------------------TSSSSC-HHHHTTTTSEECCBCC
T ss_pred EEEEECCCc------------------------------------------------hHhhhC-HHHHhcCCCeEEeeCC
Confidence 999988320 001132 677788875 789999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc-cCCCCCCccchhHHHHHHHH
Q psy1308 493 FSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 493 l~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~-~~~~~~GaR~L~~~i~~~i~ 553 (607)
++.+++.+|+...+... + . ...+++++++.++. ....++++|.+.+.+++...
T Consensus 201 l~~~~~~~il~~~~~~~---~-~----~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEA---F-N----PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp CCHHHHHHHHHHHHHHH---B-C----TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh---c-c----CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999988777421 1 0 12468889998875 22336888888888776543
No 173
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=2.7e-10 Score=115.12 Aligned_cols=191 Identities=16% Similarity=0.229 Sum_probs=127.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~ll 347 (607)
.++|++..++.+...+.... .| +++|+||+|+|||.+++.+++.+.... ...++.++++...+...+..++
T Consensus 22 ~~~g~~~~~~~l~~~l~~~~-------~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDGN-------MP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQI 93 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSCC-------CC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHH
T ss_pred HHHCCHHHHHHHHHHHHcCC-------CC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHH
Confidence 58899999998888775421 12 489999999999999999999874421 2346666665533222222222
Q ss_pred cCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
..-.. . ...+....+.+++|||++.++++.++.|++++++. ..+++||++||...
T Consensus 94 ~~~~~-----~----~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~il~~~~~~----- 148 (323)
T 1sxj_B 94 KHFAQ-----K----KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-----------SNSTRFAFACNQSN----- 148 (323)
T ss_dssp HHHHH-----B----CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-----------TTTEEEEEEESCGG-----
T ss_pred HHHHh-----c----cccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-----------CCCceEEEEeCChh-----
Confidence 10000 0 00000223679999999999999999999999853 14677888887210
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~ 507 (607)
.+. +.+.+|+. ++.|.|++.+++.+++...+.
T Consensus 149 ----------------------------------------------~l~-~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 149 ----------------------------------------------KII-EPLQSQCA-ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp ----------------------------------------------GSC-HHHHTTSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------hch-hHHHhhce-EEeecCCCHHHHHHHHHHHHH
Confidence 122 67778875 789999999999998776654
Q ss_pred HHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHH
Q psy1308 508 FWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 508 ~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i 552 (607)
. . + +.+++++++.|+. + ..++.|.+.+.++...
T Consensus 181 ~-------~-~--~~~~~~~~~~l~~-~-~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 181 L-------E-D--VKYTNDGLEAIIF-T-AEGDMRQAINNLQSTV 213 (323)
T ss_dssp H-------H-T--CCBCHHHHHHHHH-H-HTTCHHHHHHHHHHHH
T ss_pred H-------c-C--CCCCHHHHHHHHH-H-cCCCHHHHHHHHHHHH
Confidence 2 1 2 2478999998875 2 2567787777777654
No 174
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.07 E-value=2.9e-10 Score=109.54 Aligned_cols=169 Identities=13% Similarity=0.168 Sum_probs=115.0
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
+..++++||+|+|||.+++.+++.+... ...+..++++.+.... .+.+ ..+ ...++|+|
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~~--~~~~----------------~~~--~~~~vlii 110 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASIS--TALL----------------EGL--EQFDLICI 110 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGSC--GGGG----------------TTG--GGSSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHH--HHHH----------------Hhc--cCCCEEEE
Confidence 3478999999999999999999988654 4556777776543211 1111 111 23579999
Q ss_pred ecCCccCHHH--HHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCc
Q psy1308 377 DEVDKAHPDV--LTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNL 454 (607)
Q Consensus 377 DEiek~~~~~--~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (607)
||++.++... ++.|+.+++.-. ......+|++|+.....+
T Consensus 111 De~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~~----------------------------- 152 (242)
T 3bos_A 111 DDVDAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPMEA----------------------------- 152 (242)
T ss_dssp ETGGGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTTT-----------------------------
T ss_pred eccccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHHH-----------------------------
Confidence 9999998766 888888876321 111234677776322110
Q ss_pred chhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 455 DVTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
..+. +.+.+|+. .++.|.|++.+++.+++...+.. .+ +.++++++++|+
T Consensus 153 ------------------~~~~-~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~--------~~--~~~~~~~~~~l~ 203 (242)
T 3bos_A 153 ------------------GFVL-PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM--------RG--LQLPEDVGRFLL 203 (242)
T ss_dssp ------------------TCCC-HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH--------TT--CCCCHHHHHHHH
T ss_pred ------------------HHhh-hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHH
Confidence 0011 66777775 78899999999999988776642 23 357899999998
Q ss_pred ccCCCCCCccchhHHHHHHHHHH
Q psy1308 533 DGYDVHYGARSIKHEVERQVVSQ 555 (607)
Q Consensus 533 ~~~~~~~GaR~L~~~i~~~i~~~ 555 (607)
. + ++++.|.+.+.+++.....
T Consensus 204 ~-~-~~g~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 204 N-R-MARDLRTLFDVLDRLDKAS 224 (242)
T ss_dssp H-H-TTTCHHHHHHHHHHHHHHH
T ss_pred H-H-ccCCHHHHHHHHHHHHHHH
Confidence 5 3 4789999999998766544
No 175
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.04 E-value=7e-11 Score=116.20 Aligned_cols=199 Identities=18% Similarity=0.192 Sum_probs=115.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC--C--CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 269 RIVGQESAINIISAAIKRKENG--W--TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~--~--~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.++|++.+++.+...+...... + .....|..++|+||+|+|||.+++.++..+.. +++.++++.+...
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~----~~~~v~~~~~~~~---- 83 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV----PFFSMGGSSFIEM---- 83 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC----CCCCCCSCTTTTS----
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC----CEEEechHHHHHh----
Confidence 4677777777776655432100 0 00111335889999999999999999998743 4777777655321
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHH---------------HHHHHHHhhccceeecCCCcEEec
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD---------------VLTVLLQLFDEGRLTDGKGKTIEC 409 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~---------------~~~~Ll~~~~~~~~~~~~g~~~~~ 409 (607)
+.|... ..-..+.........++|||||+|.+.+. .++.|+..++.-. ...
T Consensus 84 -~~~~~~-----~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~ 149 (268)
T 2r62_A 84 -FVGLGA-----SRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG--------SEN 149 (268)
T ss_dssp -CSSSCS-----SSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS--------CSC
T ss_pred -hcchHH-----HHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc--------cCC
Confidence 222111 11123344445556789999999998764 3455555554210 122
Q ss_pred CceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccce
Q psy1308 410 KDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINEI 487 (607)
Q Consensus 410 ~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~i 487 (607)
.++++|+|||.... +. +.+.. |++..
T Consensus 150 ~~v~vi~ttn~~~~---------------------------------------------------ld-~~l~r~~Rf~~~ 177 (268)
T 2r62_A 150 APVIVLAATNRPEI---------------------------------------------------LD-PALMRPGRFDRQ 177 (268)
T ss_dssp SCCEEEECBSCCTT---------------------------------------------------SC-GGGGSSSSSCCC
T ss_pred CCEEEEEecCCchh---------------------------------------------------cC-HhHcCCCCCCeE
Confidence 45789999993210 11 44555 88888
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHH
Q psy1308 488 VYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVV 553 (607)
Q Consensus 488 v~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~ 553 (607)
+.+.+++.++..+|+...+.. .... ++..++.|+. ....+..|.|++.+++...
T Consensus 178 i~i~~p~~~~r~~il~~~~~~--------~~~~---~~~~~~~la~-~~~g~~g~dl~~l~~~a~~ 231 (268)
T 2r62_A 178 VLVDKPDFNGRVEILKVHIKG--------VKLA---NDVNLQEVAK-LTAGLAGADLANIINEAAL 231 (268)
T ss_dssp CBCCCCCTTTHHHHHHHHTSS--------SCCC---SSCCTTTTTS-SSCSSCHHHHHHHHHHHHH
T ss_pred EEecCcCHHHHHHHHHHHHhc--------CCCC---CccCHHHHHH-HcCCCCHHHHHHHHHHHHH
Confidence 889999999998887654431 1111 2222445554 2222223777777766543
No 176
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.00 E-value=7.4e-10 Score=117.54 Aligned_cols=195 Identities=15% Similarity=0.218 Sum_probs=114.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..++.+...+.+.. +.+++|+||+|+|||.+++.++..+...+ ..+++.++++
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~--------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------- 245 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRT--------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------- 245 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSS--------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CccCcHHHHHHHHHHHhccC--------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------
Confidence 48999999999888876522 23678999999999999999999875421 3457777776
Q ss_pred hHhhhcCCCCCccCC--CCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 343 VAKLIGAPPGYLGHD--DGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 343 ~~~llg~~~g~~g~~--~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
. .|.|.- .-..+...+....++|+|+| ...+.++.|++.++.| ++++|++||.
T Consensus 246 -~-------~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~at~~ 300 (468)
T 3pxg_A 246 -T-------KYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGATTL 300 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEECCT
T ss_pred -c-------cccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEecCCH
Confidence 1 122211 11234455566678899999 6778889999998754 4678999884
Q ss_pred chHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHH
Q psy1308 421 ASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHT 500 (607)
Q Consensus 421 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~ 500 (607)
..-. + . -.. .|.|.+||+ ++.+.+++.++...
T Consensus 301 ~e~~--~-------------------------------------~-------~~~-~~al~~Rf~-~i~v~~p~~e~~~~ 332 (468)
T 3pxg_A 301 DEYR--K-------------------------------------Y-------IEK-DAALERRFQ-PIQVDQPSVDESIQ 332 (468)
T ss_dssp TTTH--H-------------------------------------H-------HTT-CSHHHHSEE-EEECCCCCHHHHHH
T ss_pred HHHH--H-------------------------------------H-------hhc-CHHHHHhCc-cceeCCCCHHHHHH
Confidence 3210 0 0 001 278888996 58888899999999
Q ss_pred HHHHHHHHHH---------------HHHhhcCCcEEEeCHhHHHHHH--------ccCCCCCCccchhHHHHHH
Q psy1308 501 LVCRELNFWA---------------KKALDKHNINIVWDIDVETILA--------DGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 501 i~~~~l~~~~---------------~~~~~~~~i~l~~~~~a~~~L~--------~~~~~~~GaR~L~~~i~~~ 551 (607)
|+...+..+. .++..++-....+++.+++.|. ..+.++...+.|++.+++.
T Consensus 333 iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 333 ILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 9875443211 0111111111223334444431 1355778888888888763
No 177
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.2e-09 Score=111.35 Aligned_cols=173 Identities=18% Similarity=0.259 Sum_probs=112.6
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLI 347 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~ll 347 (607)
.++||..+++.+...+.... ..+++|+||+|+|||.+++.++..+.... ...+..++.+...+...+.+.+
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~--------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i 97 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK--------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQI 97 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHH
T ss_pred HhcCcHHHHHHHHHHHhcCC--------CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHH
Confidence 47899999998887776432 12489999999999999999999886431 1234555554432222222221
Q ss_pred cCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 348 GAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 348 g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
+.... .. ......+.++++||++.++.+.++.|++++++.. .+++||+++|...
T Consensus 98 ~~~~~-----~~-----~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~il~~n~~~----- 151 (340)
T 1sxj_C 98 KDFAS-----TR-----QIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-----------KNTRFCVLANYAH----- 151 (340)
T ss_dssp HHHHH-----BC-----CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEESCGG-----
T ss_pred HHHHh-----hc-----ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-----------CCeEEEEEecCcc-----
Confidence 10000 00 0001236799999999999999999999998532 4567888888210
Q ss_pred HHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHH
Q psy1308 428 HALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELN 507 (607)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~ 507 (607)
.+. |.+.+|+. .+.|.|++.+++.+++...+.
T Consensus 152 ----------------------------------------------~i~-~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 152 ----------------------------------------------KLT-PALLSQCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp ----------------------------------------------GSC-HHHHTTSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------ccc-hhHHhhce-eEeccCCCHHHHHHHHHHHHH
Confidence 122 77888885 688999999998887765543
Q ss_pred HHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 508 FWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 508 ~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
. .+ +.+++++.+.++.
T Consensus 184 ~--------~~--~~i~~~~~~~i~~ 199 (340)
T 1sxj_C 184 H--------EK--LKLSPNAEKALIE 199 (340)
T ss_dssp T--------TT--CCBCHHHHHHHHH
T ss_pred H--------cC--CCCCHHHHHHHHH
Confidence 1 12 3467777777653
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.95 E-value=1.1e-08 Score=108.33 Aligned_cols=194 Identities=18% Similarity=0.229 Sum_probs=122.5
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC--CC--CCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhH
Q psy1308 269 RIVGQESAINIISAAIKRKENG--WT--DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVA 344 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~--~~--~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~ 344 (607)
.++|++.++..+...+...... +. ...-|..++|+||+|+|||.++++++..+. .+|+.++++.+...
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~---- 103 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEM---- 103 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSS----
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHh----
Confidence 5888888888887766543211 11 112234689999999999999999998763 56999988765431
Q ss_pred hhhcCCCCCccCCCCchhhHHHhhC---CCeEEEEecCCccCH--------------HHHHHHHHhhccceeecCCCcEE
Q psy1308 345 KLIGAPPGYLGHDDGGQLTKRLKKC---PNAVVLFDEVDKAHP--------------DVLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 345 ~llg~~~g~~g~~~~~~l~~~~~~~---~~~vl~lDEiek~~~--------------~~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
++|.. ...+...++.+ ..+++|||||+.+.+ ..++.|+..++.+.
T Consensus 104 --------~~g~~-~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~--------- 165 (499)
T 2dhr_A 104 --------FVGVG-AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------- 165 (499)
T ss_dssp --------CTTHH-HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC---------
T ss_pred --------hhhhH-HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc---------
Confidence 11110 01122333333 348999999987642 34566666666432
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--ccc
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RIN 485 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~ 485 (607)
....+++|+++|.... +. |.++. ||+
T Consensus 166 ~~~~viviAatn~p~~---------------------------------------------------LD-~aLlr~gRfd 193 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDI---------------------------------------------------LD-PALLRPGRFD 193 (499)
T ss_dssp SSCCCEEEECCSCGGG---------------------------------------------------SC-TTTSSTTSSC
T ss_pred cCccEEEEEecCChhh---------------------------------------------------cC-cccccccccc
Confidence 1245788888883100 11 44444 788
Q ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCc-cchhHHHHHHHHH
Q psy1308 486 EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGA-RSIKHEVERQVVS 554 (607)
Q Consensus 486 ~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~Ga-R~L~~~i~~~i~~ 554 (607)
..+.+.+++.++..+|+...+. + +.+++++ +..|+ +.|+++. |.|++.+.+....
T Consensus 194 r~i~i~~Pd~~~R~~IL~~~~~----------~--~~l~~dv~l~~lA--~~t~G~~gadL~~lv~~Aa~~ 250 (499)
T 2dhr_A 194 RQIAIDAPDVKGREQILRIHAR----------G--KPLAEDVDLALLA--KRTPGFVGADLENLLNEAALL 250 (499)
T ss_dssp CEEECCCCCHHHHHHHHHHTTS----------S--SCCCCSSTTHHHH--TTSCSCCHHHHHHHHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHHh----------c--CCCChHHHHHHHH--HhcCCCCHHHHHHHHHHHHHH
Confidence 8888888899988888754321 1 1344454 56665 5677776 9999999876553
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=2e-09 Score=110.26 Aligned_cols=195 Identities=16% Similarity=0.194 Sum_probs=116.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc----------
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ---------- 338 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~---------- 338 (607)
.++||+.+++.+...+. .....| +++|+||+|+|||.+++.++..+...+ .+.+.++...+.
T Consensus 15 ~~vg~~~~~~~l~~~~~------~~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~-~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSD------QPRDLP-HLLLYGPNGTGKKTRCMALLESIFGPG-VYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GCCSCHHHHHHHHTTTT------CTTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTT-CCC------------------C
T ss_pred HhcCCHHHHHHHHHHHh------hCCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC-CCeEEecceeecccccccceee
Confidence 47889888877655541 111123 389999999999999999999664431 111111100000
Q ss_pred ---ccchhHhhhcCCCCCccCCCCchhhHHHh-----------------hCCCeEEEEecCCccCHHHHHHHHHhhccce
Q psy1308 339 ---EKHEVAKLIGAPPGYLGHDDGGQLTKRLK-----------------KCPNAVVLFDEVDKAHPDVLTVLLQLFDEGR 398 (607)
Q Consensus 339 ---~~~~~~~llg~~~g~~g~~~~~~l~~~~~-----------------~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~ 398 (607)
... ...+.... .+......+.+.+. ..++.+++|||++.+++..++.|++.+++.
T Consensus 87 ~~~~~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~- 161 (354)
T 1sxj_E 87 VVSSPY-HLEITPSD---MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY- 161 (354)
T ss_dssp CEECSS-EEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS-
T ss_pred eecccc-eEEecHhh---cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh-
Confidence 000 00000000 00000001111111 124569999999999999999999999852
Q ss_pred eecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCCh
Q psy1308 399 LTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRD 478 (607)
Q Consensus 399 ~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~ 478 (607)
..++.||++|+... .+. |
T Consensus 162 ----------~~~~~~Il~t~~~~---------------------------------------------------~l~-~ 179 (354)
T 1sxj_E 162 ----------SKNIRLIMVCDSMS---------------------------------------------------PII-A 179 (354)
T ss_dssp ----------TTTEEEEEEESCSC---------------------------------------------------SSC-H
T ss_pred ----------cCCCEEEEEeCCHH---------------------------------------------------HHH-H
Confidence 13567888887210 022 6
Q ss_pred hhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeC-HhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 479 EFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWD-IDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 479 el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~-~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
.+.+|+ ..+.|.|++.+++.+++...+.. .+ +.++ +++++.|+. . ..++.|.+.+.+++.
T Consensus 180 ~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~--------~~--~~~~~~~~l~~i~~-~-~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 180 PIKSQC-LLIRCPAPSDSEISTILSDVVTN--------ER--IQLETKDILKRIAQ-A-SNGNLRVSLLMLESM 240 (354)
T ss_dssp HHHTTS-EEEECCCCCHHHHHHHHHHHHHH--------HT--CEECCSHHHHHHHH-H-HTTCHHHHHHHHTHH
T ss_pred HHHhhc-eEEecCCcCHHHHHHHHHHHHHH--------cC--CCCCcHHHHHHHHH-H-cCCCHHHHHHHHHHH
Confidence 788888 77899999999988887765532 13 3578 889998875 2 257777777777653
No 180
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.93 E-value=5.5e-09 Score=110.63 Aligned_cols=65 Identities=28% Similarity=0.279 Sum_probs=50.3
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
..++||+.+++.+...+.....+.. .|..++|+||+|+|||.+|+.++..+.. ..+|+.++++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~---~~~~iLl~GppGtGKT~la~ala~~l~~--~~~~~~~~~~~~ 101 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKM---AGRAVLLAGPPGTGKTALALAIAQELGS--KVPFCPMVGSEV 101 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEECCTTSSHHHHHHHHHHHHCT--TSCEEEEEGGGG
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCC---CCCeEEEECCCcCCHHHHHHHHHHHhCC--CceEEEEeHHHH
Confidence 4689999999988877766655432 2347999999999999999999999853 356888777644
No 181
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=6.8e-09 Score=103.29 Aligned_cols=145 Identities=14% Similarity=0.255 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhcc--CcCCceEEeeccc-ccccchhHhhhc
Q psy1308 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR--DKKEAFIRLDMSE-YQEKHEVAKLIG 348 (607)
Q Consensus 272 Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~--~~~~~~~~l~~a~-~~~~~~~~~llg 348 (607)
||+++++.+...++... +.+++|+||+|+|||.+++.+++.... .....+..++.+. ..+-..+.+
T Consensus 1 g~~~~~~~L~~~i~~~~--------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~--- 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT--- 69 (305)
T ss_dssp ---CHHHHHHHHHHTCS--------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH---
T ss_pred ChHHHHHHHHHHHHCCC--------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHH---
Confidence 67788888887776543 237999999999999999999985311 1123455555432 111111122
Q ss_pred CCCCCccCCCCchhhHHHhhCC----CeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHH
Q psy1308 349 APPGYLGHDDGGQLTKRLKKCP----NAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~~~----~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~ 424 (607)
+.+.+...| +.|+++||+|.++.+.++.|++.+|+.. .+++||++|+..
T Consensus 70 -------------li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~-----------~~t~fIl~t~~~--- 122 (305)
T 2gno_A 70 -------------IKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP-----------EYAVIVLNTRRW--- 122 (305)
T ss_dssp -------------HHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-----------TTEEEEEEESCG---
T ss_pred -------------HHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-----------CCeEEEEEECCh---
Confidence 222233332 5799999999999999999999999642 577888888721
Q ss_pred HHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHH
Q psy1308 425 IAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCR 504 (607)
Q Consensus 425 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~ 504 (607)
..+. |.+.+| ++.|.|++.+++.+++..
T Consensus 123 ------------------------------------------------~kl~-~tI~SR---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 123 ------------------------------------------------HYLL-PTIKSR---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp ------------------------------------------------GGSC-HHHHTT---SEEEECCCCHHHHHHHHH
T ss_pred ------------------------------------------------HhCh-HHHHce---eEeCCCCCHHHHHHHHHH
Confidence 0122 788889 899999999999998877
Q ss_pred HH
Q psy1308 505 EL 506 (607)
Q Consensus 505 ~l 506 (607)
.+
T Consensus 151 ~~ 152 (305)
T 2gno_A 151 KI 152 (305)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=7.6e-09 Score=111.27 Aligned_cols=201 Identities=14% Similarity=0.116 Sum_probs=123.9
Q ss_pred hHhhhhHHHHHHHHHHHHHhh----CCCCCC-----CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc
Q psy1308 268 DRIVGQESAINIISAAIKRKE----NGWTDD-----DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ 338 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~----~~~~~~-----~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~ 338 (607)
..++|++..++.+...+.... .++..+ ..+..++|+||+|+|||.+++.+++.+. ..++.++++...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s~~~ 114 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNASDVR 114 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTTSCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCCCcc
Confidence 358899999999988876532 122111 1234899999999999999999999873 358888888776
Q ss_pred ccchhHhhhcCCCCCccCCCCchhhHH----HhhCCCeEEEEecCCccCHHHH---HHHHHhhccceeecCCCcEEecCc
Q psy1308 339 EKHEVAKLIGAPPGYLGHDDGGQLTKR----LKKCPNAVVLFDEVDKAHPDVL---TVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 339 ~~~~~~~llg~~~g~~g~~~~~~l~~~----~~~~~~~vl~lDEiek~~~~~~---~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
....+...+....+.. ...+.+... .......+|||||++.+....+ ..|++++++. +
T Consensus 115 ~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-------------~ 179 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNM--SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-------------S 179 (516)
T ss_dssp CHHHHHHTGGGGTTBC--CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------------S
T ss_pred hHHHHHHHHHHHhccc--cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------------C
Confidence 5443333332100000 000000000 1224578999999999977544 7788888742 2
Q ss_pred eEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeec
Q psy1308 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491 (607)
Q Consensus 412 ~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~ 491 (607)
..||+++|.... ..+ +.|.+| ...+.|.
T Consensus 180 ~~iIli~~~~~~-------------------------------------------------~~l--~~l~~r-~~~i~f~ 207 (516)
T 1sxj_A 180 TPLILICNERNL-------------------------------------------------PKM--RPFDRV-CLDIQFR 207 (516)
T ss_dssp SCEEEEESCTTS-------------------------------------------------STT--GGGTTT-SEEEECC
T ss_pred CCEEEEEcCCCC-------------------------------------------------ccc--hhhHhc-eEEEEeC
Confidence 235555551000 001 234333 4578999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
|++.+++.+++...+.. . + +.+++++++.|++ +. .++.|.+.+.++..
T Consensus 208 ~~~~~~~~~~L~~i~~~-------~-~--~~i~~~~l~~la~-~s-~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 208 RPDANSIKSRLMTIAIR-------E-K--FKLDPNVIDRLIQ-TT-RGDIRQVINLLSTI 255 (516)
T ss_dssp CCCHHHHHHHHHHHHHH-------H-T--CCCCTTHHHHHHH-HT-TTCHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHH-------c-C--CCCCHHHHHHHHH-Hc-CCcHHHHHHHHHHH
Confidence 99999988887554431 1 2 3478999999985 32 56688888777654
No 183
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.91 E-value=2.1e-09 Score=110.46 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=95.3
Q ss_pred ccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHH-HHHhccCcCCceEEeeccccc
Q psy1308 260 YPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQL-AFYIHRDKKEAFIRLDMSEYQ 338 (607)
Q Consensus 260 ~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~l-a~~l~~~~~~~~~~l~~a~~~ 338 (607)
..+...+.. ++||+.+...+.-++.... .......++|+.|++|+ ||.+++.+ +..+.+. .|++..++.
T Consensus 206 ~~l~~sIap-I~G~e~vK~aLll~L~GG~---~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~---~ft~g~~ss-- 275 (506)
T 3f8t_A 206 TTFARAIAP-LPGAEEVGKMLALQLFSCV---GKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRG---VYVDLRRTE-- 275 (506)
T ss_dssp HHHHHHHCC-STTCHHHHHHHHHHHTTCC---SSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSE---EEEEGGGCC--
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHcCCc---cccCCceeEEEECCCCh-HHHHHHHHHHHhCCCe---EEecCCCCC--
Confidence 346677778 9999987665554443221 11122347999999999 99999999 8776442 244333221
Q ss_pred ccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 339 EKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 339 ~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
...+.+...+-.| -..-.+.+..+++|++|+|||+++++..|..|++.|+++.++.. |. .-..++.+|+|+
T Consensus 276 ----~~gLt~s~r~~tG---~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA~ 346 (506)
T 3f8t_A 276 ----LTDLTAVLKEDRG---WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAAI 346 (506)
T ss_dssp ----HHHHSEEEEESSS---EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEEE
T ss_pred ----ccCceEEEEcCCC---cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEEe
Confidence 1112221000011 11123556678899999999999999999999999999999877 66 455788999999
Q ss_pred Cc
Q psy1308 419 NL 420 (607)
Q Consensus 419 n~ 420 (607)
|-
T Consensus 347 NP 348 (506)
T 3f8t_A 347 NP 348 (506)
T ss_dssp CC
T ss_pred Cc
Confidence 94
No 184
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.90 E-value=5.8e-10 Score=123.73 Aligned_cols=203 Identities=19% Similarity=0.289 Sum_probs=114.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC---C--CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 269 RIVGQESAINIISAAIKRKENG---W--TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~---~--~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
.+.|.+.+.+.+.+.+...... + .....|..+||+||+|||||.+|+++|..+. .+|+.++.+.. +
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~----~~f~~v~~~~l-----~ 548 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPEL-----L 548 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT----CEEEECCHHHH-----H
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC----CceEEeccchh-----h
Confidence 4667778887776666432111 0 1122344789999999999999999998774 34777765443 2
Q ss_pred HhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccCH--------------HHHHHHHHhhccceeecCCCcEE
Q psy1308 344 AKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAHP--------------DVLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~~--------------~~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
.+ |+|..+. ..+....++...+||||||||.+-+ .+.+.||..|+.-.
T Consensus 549 s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~--------- 612 (806)
T 3cf2_A 549 TM-------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------- 612 (806)
T ss_dssp TT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC---------
T ss_pred cc-------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC---------
Confidence 22 3332211 2234445566789999999998632 26788888887321
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--ccc
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RIN 485 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~ 485 (607)
...++++|.|||... . + .|.++. |||
T Consensus 613 ~~~~V~vi~aTN~p~-------------------------------------------~--------l-D~AllRpgRfd 640 (806)
T 3cf2_A 613 TKKNVFIIGATNRPD-------------------------------------------I--------I-DPAILRPGRLD 640 (806)
T ss_dssp SSSSEEEECC-CCSS-------------------------------------------S--------S-CHHHHSTTTSC
T ss_pred CCCCEEEEEeCCCch-------------------------------------------h--------C-CHhHcCCCcce
Confidence 124678899999321 0 1 155655 899
Q ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCCccchhHHHHHHHHHHHHHHHH
Q psy1308 486 EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYGARSIKHEVERQVVSQLAAAHE 561 (607)
Q Consensus 486 ~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l 561 (607)
..+.+.+++.++..+|++..+.. ..+ ++++ ++.|++ ....+-...|++.+..+...++-+.+.
T Consensus 641 ~~i~v~lPd~~~R~~il~~~l~~----------~~~--~~~~dl~~la~-~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 641 QLIYIPLPDEKSRVAILKANLRK----------SPV--AKDVDLEFLAK-MTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp CEEEC-----CHHHHTTTTTSSC----------C----CCC-----------------CHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCcCHHHHHHHHHHHhcC----------CCC--CCCCCHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777888888887655421 111 1222 345554 222334456999998888888766553
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.89 E-value=1.7e-08 Score=102.28 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccc--------cchh
Q psy1308 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE--------KHEV 343 (607)
Q Consensus 272 Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~--------~~~~ 343 (607)
.+...++.+...+..... |-.++|+||+|+|||.+++.+++.+......... -|..... +.++
T Consensus 6 w~~~~~~~l~~~i~~~~~-------~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~--~c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRG-------HHALLIQALPGMGDDALIYALSRYLLCQQPQGHK--SCGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp GGHHHHHHHHHHHHTTCC-------CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTB--CCSCSHHHHHHHHTCCTTE
T ss_pred chHHHHHHHHHHHHcCCc-------ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCC--CCCCCHHHHHHhcCCCCCE
Confidence 355666666666654321 2369999999999999999999988653211100 0110000 0000
Q ss_pred HhhhcCC-CCCccCCCCchhhHHHhh----CCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEec
Q psy1308 344 AKLIGAP-PGYLGHDDGGQLTKRLKK----CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTS 418 (607)
Q Consensus 344 ~~llg~~-~g~~g~~~~~~l~~~~~~----~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~ts 418 (607)
..+-+.. ....+.++-..+.+.+.. ..+.|+++||+|+++.+.++.|++.+|+. ..+++||++|
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-----------~~~~~~Il~t 145 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-----------PAETWFFLAT 145 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-----------CTTEEEEEEE
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-----------CCCeEEEEEe
Confidence 0010000 001111101112222222 23689999999999999999999999863 2567899888
Q ss_pred CcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHH
Q psy1308 419 NLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498 (607)
Q Consensus 419 n~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~ 498 (607)
+.. ..+. |.+.+|. ..+.|.|++.+++
T Consensus 146 ~~~---------------------------------------------------~~l~-~ti~SRc-~~~~~~~~~~~~~ 172 (334)
T 1a5t_A 146 REP---------------------------------------------------ERLL-ATLRSRC-RLHYLAPPPEQYA 172 (334)
T ss_dssp SCG---------------------------------------------------GGSC-HHHHTTS-EEEECCCCCHHHH
T ss_pred CCh---------------------------------------------------HhCc-HHHhhcc-eeeeCCCCCHHHH
Confidence 721 0122 7788888 4789999999998
Q ss_pred HHHHHHH
Q psy1308 499 HTLVCRE 505 (607)
Q Consensus 499 ~~i~~~~ 505 (607)
.+++...
T Consensus 173 ~~~L~~~ 179 (334)
T 1a5t_A 173 VTWLSRE 179 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876543
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.89 E-value=3.2e-09 Score=111.65 Aligned_cols=178 Identities=16% Similarity=0.285 Sum_probs=115.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~ 375 (607)
+.+++|+||+|+|||.+++.++..+.... ...+..+++..+.. .....+.. .....+...+ .....+||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~--~~~~~~~~-------~~~~~~~~~~-~~~~~vL~ 199 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN--DLVDSMKE-------GKLNEFREKY-RKKVDILL 199 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH--HHHHHHHT-------TCHHHHHHHH-TTTCSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH--HHHHHHHc-------ccHHHHHHHh-cCCCCEEE
Confidence 34789999999999999999999874321 34577777765421 11111110 0001111111 11567999
Q ss_pred EecCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCC
Q psy1308 376 FDEVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSN 453 (607)
Q Consensus 376 lDEiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (607)
|||++.+.. ..|..|+..++.-. . .+..+|++|+.....+
T Consensus 200 IDEi~~l~~~~~~q~~l~~~l~~l~--~--------~~~~iIitt~~~~~~l---------------------------- 241 (440)
T 2z4s_A 200 IDDVQFLIGKTGVQTELFHTFNELH--D--------SGKQIVICSDREPQKL---------------------------- 241 (440)
T ss_dssp EECGGGGSSCHHHHHHHHHHHHHHH--T--------TTCEEEEEESSCGGGC----------------------------
T ss_pred EeCcccccCChHHHHHHHHHHHHHH--H--------CCCeEEEEECCCHHHH----------------------------
Confidence 999999886 78888888876321 1 1234666666322211
Q ss_pred cchhcchhhhhhhhhHHHHhccCChhhhcccc--ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHH
Q psy1308 454 LDVTISRHFKDHVVQPILKRHFRRDEFLGRIN--EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETIL 531 (607)
Q Consensus 454 ~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~--~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L 531 (607)
..+. +.+.+|+. .++.+.|++.++...|+...+.. . + +.++++++++|
T Consensus 242 -------------------~~l~-~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~-------~-~--~~i~~e~l~~l 291 (440)
T 2z4s_A 242 -------------------SEFQ-DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI-------E-H--GELPEEVLNFV 291 (440)
T ss_dssp -------------------SSCC-HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-------H-T--CCCCTTHHHHH
T ss_pred -------------------HHHH-HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------c-C--CCCCHHHHHHH
Confidence 0122 77888885 67889999999999988776642 1 2 35789999999
Q ss_pred HccCCCCCCccchhHHHHHHHHH
Q psy1308 532 ADGYDVHYGARSIKHEVERQVVS 554 (607)
Q Consensus 532 ~~~~~~~~GaR~L~~~i~~~i~~ 554 (607)
+. + +++++|.+.+.+++.+..
T Consensus 292 a~-~-~~gn~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 292 AE-N-VDDNLRRLRGAIIKLLVY 312 (440)
T ss_dssp HH-H-CCSCHHHHHHHHHHHHHH
T ss_pred HH-h-cCCCHHHHHHHHHHHHHH
Confidence 85 2 368999999999887654
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.86 E-value=3.2e-09 Score=109.96 Aligned_cols=212 Identities=19% Similarity=0.245 Sum_probs=128.1
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc--CCceEEeecccccccchh-Hh
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK--KEAFIRLDMSEYQEKHEV-AK 345 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~--~~~~~~l~~a~~~~~~~~-~~ 345 (607)
.++|++..++.+...+.....+ ..+..++++||+|+|||.+++.++..+.... ..+++.+++......... ..
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~----~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYRE----EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGT----CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 5889999988887776544222 2244788999999999999999998874321 345777777654332221 12
Q ss_pred h---hcCCCCCccCCCC---chhhHHHhhCC-CeEEEEecCCccC----HHHHHHHHHhhccceeecCCCcEEecCceEE
Q psy1308 346 L---IGAPPGYLGHDDG---GQLTKRLKKCP-NAVVLFDEVDKAH----PDVLTVLLQLFDEGRLTDGKGKTIECKDAIF 414 (607)
Q Consensus 346 l---lg~~~g~~g~~~~---~~l~~~~~~~~-~~vl~lDEiek~~----~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~i 414 (607)
+ +|......|.... ..+...+.... ..+|+|||++.+. .+.+..|+..+++. ...++.+
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~~~ 166 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKISF 166 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--EEE
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeEEE
Confidence 2 2222111221111 11223333333 6799999999875 56777777777532 1135678
Q ss_pred EEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccc-eeeeccC
Q psy1308 415 VMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE-IVYFLPF 493 (607)
Q Consensus 415 I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~-iv~f~pl 493 (607)
|++|+.... ...+. +.+.+|+.. .+.|.|+
T Consensus 167 I~~~~~~~~------------------------------------------------~~~~~-~~~~~r~~~~~i~l~~l 197 (386)
T 2qby_A 167 IGITNDVKF------------------------------------------------VDLLD-PRVKSSLSEEEIIFPPY 197 (386)
T ss_dssp EEEESCGGG------------------------------------------------GGGCT-THHHHTTTTEEEEECCC
T ss_pred EEEECCCCh------------------------------------------------HhhhC-HHHhccCCCeeEEeCCC
Confidence 888872110 00122 555666653 7899999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCC--CCCccchhHHHHHHH
Q psy1308 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDV--HYGARSIKHEVERQV 552 (607)
Q Consensus 494 ~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~--~~GaR~L~~~i~~~i 552 (607)
+.+++.+++...+.. ... ...+++++.+++.. +.+ .++.|.+.+.+++..
T Consensus 198 ~~~~~~~il~~~~~~----~~~----~~~~~~~~~~~l~~-~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 198 NAEELEDILTKRAQM----AFK----PGVLPDNVIKLCAA-LAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp CHHHHHHHHHHHHHH----HBC----SSCSCHHHHHHHHH-HHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh----hcc----CCCCCHHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Confidence 999999998876532 111 23578888888875 333 267777766665543
No 188
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.84 E-value=6.9e-08 Score=97.81 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=120.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG 348 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg 348 (607)
.++||..+++.+...+...... ...+-+++|+||+|+|||.+++.++..+... +..........
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~----~~~~sg~~~~~--------- 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMR---GEVLDHVLLAGPPGLGKTTLAHIIASELQTN----IHVTSGPVLVK--------- 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHH---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCC----EEEEETTTCCS---------
T ss_pred HccCcHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEechHhcC---------
Confidence 4678888888887777654211 0113378999999999999999999987432 33332222111
Q ss_pred CCCCCccCCCCchhhHHHhh-CCCeEEEEecCCccCHHHHHHHHHhhccceeec--CCC---cE--EecCceEEEEecCc
Q psy1308 349 APPGYLGHDDGGQLTKRLKK-CPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTD--GKG---KT--IECKDAIFVMTSNL 420 (607)
Q Consensus 349 ~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~--~~g---~~--~~~~~~~iI~tsn~ 420 (607)
++.+...... ....|+++||++.+.+.+++.|+..+++..... ..+ .. .....+.+|.+++.
T Consensus 90 ----------~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 90 ----------QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp ----------HHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred ----------HHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 1122222222 346799999999999999999988887543210 000 00 11123344444441
Q ss_pred chHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHH
Q psy1308 421 ASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHT 500 (607)
Q Consensus 421 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~ 500 (607)
. ..+. +.+.+|+...+.|.|++.+++.+
T Consensus 160 ~---------------------------------------------------~~Ls-~~l~sR~~l~~~Ld~~~~~~l~~ 187 (334)
T 1in4_A 160 S---------------------------------------------------GLLS-SPLRSRFGIILELDFYTVKELKE 187 (334)
T ss_dssp G---------------------------------------------------GGSC-HHHHTTCSEEEECCCCCHHHHHH
T ss_pred c---------------------------------------------------ccCC-HHHHHhcCceeeCCCCCHHHHHH
Confidence 0 1132 67888887778899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHH
Q psy1308 501 LVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQ 551 (607)
Q Consensus 501 i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~ 551 (607)
|+...... .+ +.++++++.+|+. . ..+..|.+.+.+++.
T Consensus 188 iL~~~~~~--------~~--~~~~~~~~~~ia~-~-~~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 188 IIKRAASL--------MD--VEIEDAAAEMIAK-R-SRGTPRIAIRLTKRV 226 (334)
T ss_dssp HHHHHHHH--------TT--CCBCHHHHHHHHH-T-STTCHHHHHHHHHHH
T ss_pred HHHHHHHH--------cC--CCcCHHHHHHHHH-h-cCCChHHHHHHHHHH
Confidence 98765431 13 3588999999985 2 246777777777654
No 189
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.82 E-value=8.6e-09 Score=114.41 Aligned_cols=202 Identities=17% Similarity=0.179 Sum_probs=126.1
Q ss_pred hHhhhhHHHHHHHHHHHHHhh-----CCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRKE-----NGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~-----~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
..+.|.+..++.+.+.+.... ........|..+||+||+|||||.+||++|..+. .+|+.++++....
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg----~~~~~v~~~~l~s--- 276 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMS--- 276 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT----CEEEEEEHHHHHS---
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----CeEEEEEhHHhhc---
Confidence 357777777777776664321 1111123355899999999999999999998764 3588888765422
Q ss_pred hHhhhcCCCCCccCCCCchh---hHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEe
Q psy1308 343 VAKLIGAPPGYLGHDDGGQL---TKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIE 408 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l---~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~ 408 (607)
.|.|. ....+ ....+....+||||||||.+-+ .+.+.|+..|+.-. .
T Consensus 277 ---------k~~ge-se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~---------~ 337 (806)
T 3cf2_A 277 ---------KLAGE-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK---------Q 337 (806)
T ss_dssp ---------SCTTH-HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC---------G
T ss_pred ---------ccchH-HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc---------c
Confidence 12221 11122 3333445689999999998743 36677887776321 1
Q ss_pred cCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccc
Q psy1308 409 CKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINE 486 (607)
Q Consensus 409 ~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~ 486 (607)
..++++|++||.... + .|.|.. ||+.
T Consensus 338 ~~~V~VIaaTN~~d~---------------------------------------------------L-D~ALrR~GRFd~ 365 (806)
T 3cf2_A 338 RAHVIVMAATNRPNS---------------------------------------------------I-DPALRRFGRFDR 365 (806)
T ss_dssp GGCEEEEEECSSTTT---------------------------------------------------S-CTTTTSTTSSCE
T ss_pred cCCEEEEEecCChhh---------------------------------------------------c-CHHHhCCcccce
Confidence 246889999992100 1 145554 8999
Q ss_pred eeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHh-HHHHHHccCCCCCCccchhHHHHHHHHHHHHHHH
Q psy1308 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDID-VETILADGYDVHYGARSIKHEVERQVVSQLAAAH 560 (607)
Q Consensus 487 iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~-a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~ 560 (607)
.+.+.+++.++-.+|++..+. +..+ +++ -+..|+. -...+-...|...+.+....++.+..
T Consensus 366 ~I~i~~Pd~~~R~~IL~~~l~----------~~~~--~~dvdl~~lA~-~T~GfsgaDL~~Lv~eA~~~A~~r~~ 427 (806)
T 3cf2_A 366 EVDIGIPDATGRLEILQIHTK----------NMKL--ADDVDLEQVAN-ETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp EEECCCCCHHHHHHHHHHTCS----------SSEE--CTTCCHHHHHH-HCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHhc----------CCCC--CcccCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999888899988888764432 2222 222 2556664 23334456788888777776665544
No 190
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.79 E-value=1.3e-08 Score=94.07 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=95.7
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccC------cCCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRD------KKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~------~~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..++.+...+.. ..+..++++||+|+|||.+++.+++.+... ...+++.++++.....
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG-- 92 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT--
T ss_pred ccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc--
Confidence 478898888888776643 124468999999999999999999987431 1234555655432110
Q ss_pred hHhhhcCCCCCccCCCCchhhHH---H-hhCCCeEEEEecCCccC--------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKR---L-KKCPNAVVLFDEVDKAH--------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~---~-~~~~~~vl~lDEiek~~--------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
..+.|. ....+... + +.....+|+|||++.+. ..+++.|..+++.+
T Consensus 93 --------~~~~~~-~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~------------- 150 (195)
T 1jbk_A 93 --------AKYRGE-FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG------------- 150 (195)
T ss_dssp --------TCSHHH-HHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT-------------
T ss_pred --------CCcccc-HHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC-------------
Confidence 001110 00111122 2 23446799999999995 44577888777643
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
++.+|++||..... +. -... +.+.+|++ .+.+
T Consensus 151 ~~~~i~~~~~~~~~--~~--------------------------------------------~~~~-~~l~~r~~-~i~~ 182 (195)
T 1jbk_A 151 ELHCVGATTLDEYR--QY--------------------------------------------IEKD-AALERRFQ-KVFV 182 (195)
T ss_dssp SCCEEEEECHHHHH--HH--------------------------------------------TTTC-HHHHTTEE-EEEC
T ss_pred CeEEEEeCCHHHHH--HH--------------------------------------------HhcC-HHHHHHhc-eeec
Confidence 45688888722110 00 0012 78888997 5788
Q ss_pred ccCCHHHHHHHH
Q psy1308 491 LPFSKSELHTLV 502 (607)
Q Consensus 491 ~pl~~~~~~~i~ 502 (607)
.|++.++..+|+
T Consensus 183 ~~p~~~~~~~il 194 (195)
T 1jbk_A 183 AEPSVEDTIAIL 194 (195)
T ss_dssp CCCCHHHHHTTC
T ss_pred CCCCHHHHHHHh
Confidence 999999887664
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.77 E-value=4.8e-08 Score=111.59 Aligned_cols=178 Identities=15% Similarity=0.226 Sum_probs=105.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..+..+...+.+.. +..++|+||+|+|||.+++.++..+...+ ...++.++++.....
T Consensus 171 ~viGr~~~i~~l~~~l~~~~--------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g-- 240 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRT--------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG-- 240 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSS--------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred ccCCcHHHHHHHHHHHhcCC--------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc--
Confidence 37899999988888775421 23578999999999999999999874311 345777777654211
Q ss_pred hHhhhcCCCCCccCCCCch---hhHHHhhC-CCeEEEEecCCccC--------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 343 VAKLIGAPPGYLGHDDGGQ---LTKRLKKC-PNAVVLFDEVDKAH--------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~---l~~~~~~~-~~~vl~lDEiek~~--------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
..|.|. .... +...+... ...||||||++.+. .++.+.|..+++.+
T Consensus 241 --------~~~~g~-~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~------------- 298 (854)
T 1qvr_A 241 --------AKYRGE-FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG------------- 298 (854)
T ss_dssp -------------C-HHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT-------------
T ss_pred --------CccchH-HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC-------------
Confidence 112221 0111 22223333 46799999999987 56677888888654
Q ss_pred ceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeee
Q psy1308 411 DAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYF 490 (607)
Q Consensus 411 ~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f 490 (607)
++++|+++|.....- + .. .+.|.+|++. +.+
T Consensus 299 ~i~~I~at~~~~~~~----~-------------------------------------------~~-d~aL~rRf~~-i~l 329 (854)
T 1qvr_A 299 ELRLIGATTLDEYRE----I-------------------------------------------EK-DPALERRFQP-VYV 329 (854)
T ss_dssp CCCEEEEECHHHHHH----H-------------------------------------------TT-CTTTCSCCCC-EEE
T ss_pred CeEEEEecCchHHhh----h-------------------------------------------cc-CHHHHhCCce-EEe
Confidence 345888887321100 0 01 2788889975 788
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.|++.++..+|++..+..+.. .++ +.++++++..++.
T Consensus 330 ~~p~~~e~~~iL~~~~~~~~~----~~~--~~i~~~al~~~~~ 366 (854)
T 1qvr_A 330 DEPTVEETISILRGLKEKYEV----HHG--VRISDSAIIAAAT 366 (854)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH----HTT--CEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhhhhhh----hcC--CCCCHHHHHHHHH
Confidence 999999999998776665432 223 4578998888764
No 192
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.73 E-value=1.4e-07 Score=93.03 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=99.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.++++||+|+|||.+++.++..+. .+++.+++..+... ..+ ... ..-+.+.........+++++||
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~-----~~~----~~~-~~i~~~~~~~~~~~~~i~~iDe 140 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEM-----FVG----VGA-ARVRDLFETAKRHAPCIVFIDE 140 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHS-----TTT----HHH-HHHHHHHHHHHTSCSEEEEEET
T ss_pred eEEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHH-----Hhh----HHH-HHHHHHHHHHHhcCCcEEehhh
Confidence 489999999999999999998773 46788776543211 000 000 0001122222334468999999
Q ss_pred CCccC-----------HH---HHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCC
Q psy1308 379 VDKAH-----------PD---VLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTP 444 (607)
Q Consensus 379 iek~~-----------~~---~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~ 444 (607)
|+.+. .. ..+.++..++.+. ....+++++++|.. +
T Consensus 141 id~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~---------~~~~~i~~a~t~~p-~--------------------- 189 (278)
T 1iy2_A 141 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE---------KDTAIVVMAATNRP-D--------------------- 189 (278)
T ss_dssp HHHHHCC--------CHHHHHHHHHHHHHHTTCC---------TTCCEEEEEEESCT-T---------------------
T ss_pred hHhhhcccccccCCcchHHHHHHHHHHHHHhCCC---------CCCCEEEEEecCCc-h---------------------
Confidence 98642 12 3334444444332 12346777787721 0
Q ss_pred CcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--cccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEE
Q psy1308 445 SISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIV 522 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~ 522 (607)
. +. |.++. |++..+.+.+++.++..+|+...+. + +.
T Consensus 190 ---------------------~--------ld-~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~----------~--~~ 227 (278)
T 1iy2_A 190 ---------------------I--------LD-PALLRPGRFDRQIAIDAPDVKGREQILRIHAR----------G--KP 227 (278)
T ss_dssp ---------------------S--------SC-HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT----------T--SC
T ss_pred ---------------------h--------CC-HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc----------c--CC
Confidence 0 11 44444 7888899999999999988764431 1 12
Q ss_pred eCHhH-HHHHHccCCCCCCc-cchhHHHHHHHHHH
Q psy1308 523 WDIDV-ETILADGYDVHYGA-RSIKHEVERQVVSQ 555 (607)
Q Consensus 523 ~~~~a-~~~L~~~~~~~~Ga-R~L~~~i~~~i~~~ 555 (607)
+++++ +..|+ +.|++.. |.|++.+++....+
T Consensus 228 ~~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 228 LAEDVDLALLA--KRTPGFVGADLENLLNEAALLA 260 (278)
T ss_dssp BCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHH
Confidence 44444 56665 4455555 88998888765543
No 193
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.73 E-value=4.1e-08 Score=111.01 Aligned_cols=179 Identities=18% Similarity=0.286 Sum_probs=113.2
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..+..+...+.+. ++..++|+||+|+|||.+++.++..+.... ...+..++++....
T Consensus 187 ~~iGr~~~i~~l~~~l~~~--------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~--- 255 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA--- 255 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSS--------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C---
T ss_pred CccCCHHHHHHHHHHHhcc--------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc---
Confidence 4789999999887776543 234689999999999999999999874321 22344455443321
Q ss_pred hHhhhcCCCCCccCCC--CchhhHHHhhCCCeEEEEecCCcc---------CHHHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 343 VAKLIGAPPGYLGHDD--GGQLTKRLKKCPNAVVLFDEVDKA---------HPDVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEiek~---------~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
| ..|.|.-. -..+...+.....++|||||++.+ ..+.++.|.++++.+ +
T Consensus 256 -----~--~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~-------------~ 315 (758)
T 1r6b_X 256 -----G--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-------------K 315 (758)
T ss_dssp -----C--CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC-------------C
T ss_pred -----c--ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC-------------C
Confidence 0 11222100 011223334456799999999988 455666777777643 4
Q ss_pred eEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccC-Chhhhccccceeee
Q psy1308 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFR-RDEFLGRINEIVYF 490 (607)
Q Consensus 412 ~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~el~~ri~~iv~f 490 (607)
+++|++|+... . .+.|. .|.|.+||+ .+.+
T Consensus 316 ~~~I~at~~~~--~----------------------------------------------~~~~~~d~aL~~Rf~-~i~v 346 (758)
T 1r6b_X 316 IRVIGSTTYQE--F----------------------------------------------SNIFEKDRALARRFQ-KIDI 346 (758)
T ss_dssp CEEEEEECHHH--H----------------------------------------------HCCCCCTTSSGGGEE-EEEC
T ss_pred eEEEEEeCchH--H----------------------------------------------hhhhhcCHHHHhCce-EEEc
Confidence 56888887211 0 01111 266888997 6888
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHc
Q psy1308 491 LPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD 533 (607)
Q Consensus 491 ~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~ 533 (607)
.+++.++..+|+...+..+.... .+.+++++++.++.
T Consensus 347 ~~p~~~e~~~il~~l~~~~~~~~------~v~~~~~al~~~~~ 383 (758)
T 1r6b_X 347 TEPSIEETVQIINGLKPKYEAHH------DVRYTAKAVRAAVE 383 (758)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHH------TCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHH
Confidence 89999999999887665543311 24578888887763
No 194
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.73 E-value=1.4e-07 Score=91.61 Aligned_cols=195 Identities=18% Similarity=0.213 Sum_probs=111.5
Q ss_pred HhhhhHHHHHHHHHHHHHhh-------CCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc
Q psy1308 269 RIVGQESAINIISAAIKRKE-------NGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~-------~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~ 341 (607)
.++|++.++..+........ .+.. -|..++++||+|+|||.+++.++..+. .+++.++...+...
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~g~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~- 88 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPKGVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEM- 88 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCC---CCSEEEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHS-
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCC---CCCeEEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHH-
Confidence 45666666665554443221 1111 123489999999999999999998763 45777776543211
Q ss_pred hhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH--------------HHHHHHHHhhccceeecCCCcEE
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP--------------DVLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~--------------~~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
+.+ ... ..-+.+.........+++++|||+.+.+ ..++.|+..++.+.
T Consensus 89 ----~~~----~~~-~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~--------- 150 (254)
T 1ixz_A 89 ----FVG----VGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------- 150 (254)
T ss_dssp ----CTT----HHH-HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC---------
T ss_pred ----Hhh----HHH-HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC---------
Confidence 010 000 0001122222223458999999976521 23456666665432
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--ccc
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RIN 485 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~ 485 (607)
....+++++++|.. + .+. |.++. |++
T Consensus 151 ~~~~~i~~a~t~~p-~--------------------------------------------------~ld-~~l~r~~rf~ 178 (254)
T 1ixz_A 151 KDTAIVVMAATNRP-D--------------------------------------------------ILD-PALLRPGRFD 178 (254)
T ss_dssp TTCCEEEEEEESCG-G--------------------------------------------------GSC-GGGGSTTSSC
T ss_pred CCCCEEEEEccCCc-h--------------------------------------------------hCC-HHHcCCCcCC
Confidence 11345677777721 0 011 55554 788
Q ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhH-HHHHHccCCCCCC-ccchhHHHHHHHHHH
Q psy1308 486 EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDV-ETILADGYDVHYG-ARSIKHEVERQVVSQ 555 (607)
Q Consensus 486 ~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a-~~~L~~~~~~~~G-aR~L~~~i~~~i~~~ 555 (607)
..+.+.+++.++..+|++.... +. .+++++ +..|+. .|++. +|.|++.+++....+
T Consensus 179 ~~i~i~~p~~~~r~~il~~~~~----------~~--~~~~~~~~~~la~--~~~G~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 179 RQIAIDAPDVKGREQILRIHAR----------GK--PLAEDVDLALLAK--RTPGFVGADLENLLNEAALLA 236 (254)
T ss_dssp EEEECCSCCHHHHHHHHHHHHT----------TS--CBCTTCCHHHHHH--TCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHc----------CC--CCCcccCHHHHHH--HcCCCCHHHHHHHHHHHHHHH
Confidence 8899999999998888754331 11 234444 666764 34443 488999888766544
No 195
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.72 E-value=4.9e-08 Score=110.22 Aligned_cols=170 Identities=18% Similarity=0.259 Sum_probs=102.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..++.+...+.+.. +.+++|+||+|||||.+++.++..+...+ ...++.+++
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~--------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------- 244 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRT--------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------- 244 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSS--------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CccCchHHHHHHHHHHhCCC--------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------
Confidence 48999999999988876522 33689999999999999999999974421 334555555
Q ss_pred hHhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCc
Q psy1308 343 VAKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~ 420 (607)
| ..|.|.-.. ..+...+....++||||| ...+.++.|+..++.| ++++|++||.
T Consensus 245 -----g--~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~-------------~v~~I~at~~ 300 (758)
T 3pxi_A 245 -----G--TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGATTL 300 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEECCT
T ss_pred -----c--ccccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC-------------CEEEEeCCCh
Confidence 1 112221111 234445556678999999 6677888999888854 4678999883
Q ss_pred chHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHH
Q psy1308 421 ASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHT 500 (607)
Q Consensus 421 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~ 500 (607)
..-. +. -.. .|.|.+|| ..+.|.+++.++..+
T Consensus 301 ~~~~--~~--------------------------------------------~~~-d~al~rRf-~~i~v~~p~~~~~~~ 332 (758)
T 3pxi_A 301 DEYR--KY--------------------------------------------IEK-DAALERRF-QPIQVDQPSVDESIQ 332 (758)
T ss_dssp TTTH--HH--------------------------------------------HTT-CSHHHHSE-EEEECCCCCHHHHHH
T ss_pred HHHH--HH--------------------------------------------hhc-cHHHHhhC-cEEEeCCCCHHHHHH
Confidence 3210 00 001 27888899 568889999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 501 LVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 501 i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
|+...+..+ ...++ +.++++++..++
T Consensus 333 il~~~~~~~----~~~~~--~~i~~~al~~~~ 358 (758)
T 3pxi_A 333 ILQGLRDRY----EAHHR--VSITDDAIEAAV 358 (758)
T ss_dssp HHHHTTTTS----GGGSS--CSCCHHHHHHHH
T ss_pred HHHHHHHHH----HHhcC--CCCCHHHHHHHH
Confidence 987544321 11122 346677766654
No 196
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.57 E-value=4.9e-09 Score=118.30 Aligned_cols=161 Identities=20% Similarity=0.306 Sum_probs=101.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhCC---C-CCC-CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchh
Q psy1308 269 RIVGQESAINIISAAIKRKENG---W-TDD-DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEV 343 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~---~-~~~-~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~ 343 (607)
.+.|++...+.+...+...... . .-. ..+..++|+||+|+|||.+++.++..+.. +|+.++++.+..
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~----~~i~v~~~~l~~---- 549 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA----NFISIKGPELLT---- 549 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC----CCCCCCCSSSTT----
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC----CEEEEechHhhh----
Confidence 3566666766665554322110 0 001 12337899999999999999999998843 477777766532
Q ss_pred HhhhcCCCCCccCCCC--chhhHHHhhCCCeEEEEecCCcc--------------CHHHHHHHHHhhccceeecCCCcEE
Q psy1308 344 AKLIGAPPGYLGHDDG--GQLTKRLKKCPNAVVLFDEVDKA--------------HPDVLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 344 ~~llg~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEiek~--------------~~~~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
. |+|.... ..+....+....+++||||||.+ ...+++.||+.++...
T Consensus 550 -~-------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~--------- 612 (806)
T 1ypw_A 550 -M-------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------- 612 (806)
T ss_dssp -C-------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------------
T ss_pred -h-------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc---------
Confidence 1 2332211 12344445556789999999985 2457788888887431
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--ccc
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RIN 485 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~ 485 (607)
...+++||+|||.... + .|.++. ||+
T Consensus 613 ~~~~v~vI~tTN~~~~---------------------------------------------------l-d~allrpgRf~ 640 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDI---------------------------------------------------I-DPAILRPGRLD 640 (806)
T ss_dssp ---CCBCCCCCBSCGG---------------------------------------------------G-SCTTSSGGGTT
T ss_pred ccCCeEEEEecCCccc---------------------------------------------------C-CHHHhCccccC
Confidence 2357889999993211 1 156666 888
Q ss_pred ceeeeccCCHHHHHHHHHHHH
Q psy1308 486 EIVYFLPFSKSELHTLVCREL 506 (607)
Q Consensus 486 ~iv~f~pl~~~~~~~i~~~~l 506 (607)
.++.|.+++.++..+|++..+
T Consensus 641 ~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 641 QLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SCCCCCCCCCSHHHHHTTTTT
T ss_pred ceeecCCCCHHHHHHHHHHHh
Confidence 888887788888888876655
No 197
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.50 E-value=2.1e-06 Score=84.11 Aligned_cols=203 Identities=22% Similarity=0.247 Sum_probs=116.7
Q ss_pred HhhhhHHHHHHHHHHHHHh--------hCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccccc
Q psy1308 269 RIVGQESAINIISAAIKRK--------ENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~--------~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~ 340 (607)
.+.|.+...+.+.+.+... ..++.- |..++++||+|+|||.+++.++..+.. +++.++.......
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~---~~GvlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVT---PAGVLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNM 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCC---CSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSS
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC---CCeEEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhh
Confidence 4566666666665543211 122221 224899999999999999999987633 4777776554321
Q ss_pred chhHhhhcCCCCCccCC--CCchhhHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEE
Q psy1308 341 HEVAKLIGAPPGYLGHD--DGGQLTKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTI 407 (607)
Q Consensus 341 ~~~~~llg~~~g~~g~~--~~~~l~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~ 407 (607)
|.|.. .-+.+....+....+++++||++.+.+ .+.+.++..++.|.
T Consensus 84 ------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~--------- 142 (274)
T 2x8a_A 84 ------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE--------- 142 (274)
T ss_dssp ------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC---------
T ss_pred ------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc---------
Confidence 11100 001122223344578999999997532 34566666666443
Q ss_pred ecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhc--ccc
Q psy1308 408 ECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLG--RIN 485 (607)
Q Consensus 408 ~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~--ri~ 485 (607)
....+++++++|.. +. +- |.++. |||
T Consensus 143 ~~~~~i~ia~tn~p-------------------------------------------~~--------LD-~al~r~gRfd 170 (274)
T 2x8a_A 143 ARQQVFIMAATNRP-------------------------------------------DI--------ID-PAILRPGRLD 170 (274)
T ss_dssp STTCEEEEEEESCG-------------------------------------------GG--------SC-HHHHSTTSSC
T ss_pred ccCCEEEEeecCCh-------------------------------------------hh--------CC-HhhcCcccCC
Confidence 12456777888721 01 11 55554 899
Q ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHh-HHHHHHccC-CCCCCccchhHHHHHHHHHHHHHHH
Q psy1308 486 EIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDID-VETILADGY-DVHYGARSIKHEVERQVVSQLAAAH 560 (607)
Q Consensus 486 ~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~-a~~~L~~~~-~~~~GaR~L~~~i~~~i~~~l~~~~ 560 (607)
..+.+.+++.++..+|++..+.. .... .++++ -++.|+... ...+-...|...+.+....++.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~~~-------~~~~--~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTITKN-------GTKP--PLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHTTT-------TBTT--BBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEeCCcCHHHHHHHHHHHHhc-------ccCC--CCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99998888999999887765431 0011 11222 245565311 1244556788888887777765543
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.50 E-value=1.3e-07 Score=86.74 Aligned_cols=120 Identities=19% Similarity=0.326 Sum_probs=75.5
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCc------CCceEEeecccccccch
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK------KEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~------~~~~~~l~~a~~~~~~~ 342 (607)
.++|++..++.+...+... .+..++++||+|+|||.+++.+++.+.... ..++..++++......
T Consensus 23 ~~~g~~~~~~~l~~~l~~~--------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 93 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRR--------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGA- 93 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSS--------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHC-
T ss_pred hhhcchHHHHHHHHHHhCC--------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCC-
Confidence 4788988888877766431 134679999999999999999999875421 2345555543321100
Q ss_pred hHhhhcCCCCCccCC--CCchhhHHHhhC-CCeEEEEecCCccC---------HHHHHHHHHhhccceeecCCCcEEecC
Q psy1308 343 VAKLIGAPPGYLGHD--DGGQLTKRLKKC-PNAVVLFDEVDKAH---------PDVLTVLLQLFDEGRLTDGKGKTIECK 410 (607)
Q Consensus 343 ~~~llg~~~g~~g~~--~~~~l~~~~~~~-~~~vl~lDEiek~~---------~~~~~~Ll~~~~~~~~~~~~g~~~~~~ 410 (607)
.+.+.. .-..+...+... ...+|+|||++.+. .++++.|..++++ .
T Consensus 94 ---------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~-------------~ 151 (187)
T 2p65_A 94 ---------KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR-------------G 151 (187)
T ss_dssp ---------CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-------------T
T ss_pred ---------CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-------------C
Confidence 000000 001122223333 45799999999997 6677888888764 2
Q ss_pred ceEEEEecC
Q psy1308 411 DAIFVMTSN 419 (607)
Q Consensus 411 ~~~iI~tsn 419 (607)
++++|+++|
T Consensus 152 ~~~ii~~~~ 160 (187)
T 2p65_A 152 ELRCIGATT 160 (187)
T ss_dssp CSCEEEEEC
T ss_pred CeeEEEecC
Confidence 456888888
No 199
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.39 E-value=9.9e-07 Score=92.00 Aligned_cols=220 Identities=15% Similarity=0.169 Sum_probs=123.2
Q ss_pred HhhhhHHHHHHHHHHH-HHhhCCCCCCCCCceeee--eccCCCChhHHHHHHHHHhccC-----cCCceEEeeccccccc
Q psy1308 269 RIVGQESAINIISAAI-KRKENGWTDDDHPLVFLF--LGSSGIGKTELAKQLAFYIHRD-----KKEAFIRLDMSEYQEK 340 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i-~~~~~~~~~~~~p~~~ll--~G~~G~GKt~la~~la~~l~~~-----~~~~~~~l~~a~~~~~ 340 (607)
.++|.+..++.+...+ .....+.. ..+..+++ +|++|+|||.+++.+++.+... ....++.+++......
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~--~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAG--LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSC--BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCC--CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 5888999899888887 65543310 12446777 9999999999999999876431 0234566776543322
Q ss_pred chh----HhhhcCCCCCccCCCC---chhhHHHhh-CCCeEEEEecCCccC------HHHHHHHHHhhccceeecCCCcE
Q psy1308 341 HEV----AKLIGAPPGYLGHDDG---GQLTKRLKK-CPNAVVLFDEVDKAH------PDVLTVLLQLFDEGRLTDGKGKT 406 (607)
Q Consensus 341 ~~~----~~llg~~~g~~g~~~~---~~l~~~~~~-~~~~vl~lDEiek~~------~~~~~~Ll~~~~~~~~~~~~g~~ 406 (607)
... ...+|......+.... ..+...+.. ....+|+|||++.+. .+.+..|+..+++... .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~---~~~- 176 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS---RDG- 176 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC---TTS-
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc---CCC-
Confidence 222 1223332111111000 112223332 346799999999974 4777777777764210 010
Q ss_pred EecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccCCCcchhcchhhhhhhhhHHHHhccCChhhhccccc
Q psy1308 407 IECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486 (607)
Q Consensus 407 ~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~ 486 (607)
..++.+|++|+... +.+. +...+ +.+.+++..
T Consensus 177 --~~~v~lI~~~~~~~--~~~~------------------------------------------l~~~~--~~~~~~~~~ 208 (412)
T 1w5s_A 177 --VNRIGFLLVASDVR--ALSY------------------------------------------MREKI--PQVESQIGF 208 (412)
T ss_dssp --CCBEEEEEEEEETH--HHHH------------------------------------------HHHHC--HHHHTTCSE
T ss_pred --CceEEEEEEecccc--HHHH------------------------------------------Hhhhc--chhhhhcCC
Confidence 14567888876321 1000 00000 233334433
Q ss_pred eeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCC--C---CCccchhHHHHHH
Q psy1308 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDV--H---YGARSIKHEVERQ 551 (607)
Q Consensus 487 iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~--~---~GaR~L~~~i~~~ 551 (607)
.+.|.||+.+++.+++...+... .. ...+++++++.+.. +.. . ++.|.+...+...
T Consensus 209 ~i~l~~l~~~e~~~ll~~~~~~~----~~----~~~~~~~~~~~i~~-~~~~~~~~~G~p~~~~~l~~~a 269 (412)
T 1w5s_A 209 KLHLPAYKSRELYTILEQRAELG----LR----DTVWEPRHLELISD-VYGEDKGGDGSARRAIVALKMA 269 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHH----BC----TTSCCHHHHHHHHH-HHCGGGTSCCCHHHHHHHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHhc----CC----CCCCChHHHHHHHH-HHHHhccCCCcHHHHHHHHHHH
Confidence 48899999999999987665421 11 11367888888864 222 2 5666666665543
No 200
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.21 E-value=5e-06 Score=93.81 Aligned_cols=130 Identities=22% Similarity=0.276 Sum_probs=81.8
Q ss_pred hHhhhhHHHHHHHHHHHHHhhCC-----CCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccch
Q psy1308 268 DRIVGQESAINIISAAIKRKENG-----WTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342 (607)
Q Consensus 268 ~~i~Gq~~ai~~l~~~i~~~~~~-----~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~ 342 (607)
..++|++..++.+...+...... ...-..+..++|+||+|+|||.+++.++..+. .+++.++++.....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~----~~~i~v~~~~l~~~-- 277 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMSK-- 277 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT----CEEEEEEHHHHSSS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----CcEEEEEchHhhhh--
Confidence 45889999888888877642110 01122344799999999999999999998763 34788877544221
Q ss_pred hHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEecCCccCH-----------HHHHHHHHhhccceeecCCCcEEecCc
Q psy1308 343 VAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHP-----------DVLTVLLQLFDEGRLTDGKGKTIECKD 411 (607)
Q Consensus 343 ~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEiek~~~-----------~~~~~Ll~~~~~~~~~~~~g~~~~~~~ 411 (607)
..|... ..-+.+.........+++|+|||+.+.+ .++..|+.+++... ...+
T Consensus 278 -------~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~---------~~~~ 340 (806)
T 1ypw_A 278 -------LAGESE-SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK---------QRAH 340 (806)
T ss_dssp -------STTHHH-HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC---------TTSC
T ss_pred -------hhhhHH-HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc---------cccc
Confidence 111000 0011223333444578999999976643 46778888887322 1246
Q ss_pred eEEEEecCc
Q psy1308 412 AIFVMTSNL 420 (607)
Q Consensus 412 ~~iI~tsn~ 420 (607)
+++|++||.
T Consensus 341 v~vI~atn~ 349 (806)
T 1ypw_A 341 VIVMAATNR 349 (806)
T ss_dssp CEEEEECSC
T ss_pred EEEecccCC
Confidence 789999983
No 201
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.17 E-value=3.3e-06 Score=77.04 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=63.4
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
-.++++||+|+|||.+++.++..+..........+++..+... ....+.. .....+...+. ...+++||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~--~~~llilD 107 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR--LKHLMDE-------GKDTKFLKTVL--NSPVLVLD 107 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH--HHHHHHH-------TCCSHHHHHHH--TCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHhcC-------chHHHHHHHhc--CCCEEEEe
Confidence 3689999999999999999998875221223333443332111 1111110 00112223332 35699999
Q ss_pred cCC--ccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHH
Q psy1308 378 EVD--KAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424 (607)
Q Consensus 378 Eie--k~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~ 424 (607)
|++ .+++..+..|.++++... -.+..+|+|||...+.
T Consensus 108 E~~~~~~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 108 DLGSERLSDWQRELISYIITYRY----------NNLKSTIITTNYSLQR 146 (180)
T ss_dssp TCSSSCCCHHHHHHHHHHHHHHH----------HTTCEEEEECCCCSCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHHH----------HcCCCEEEEcCCChhH
Confidence 998 577888888888886321 1235688999966543
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.13 E-value=3.4e-06 Score=78.55 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=65.3
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
|..++++||+|+|||.+++.++..+... ..++..++++.+. ..+..... ......+...+... .+|+|
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~--~~lil 121 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYVPELF-----RELKHSLQ----DQTMNEKLDYIKKV--PVLML 121 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEHHHHH-----HHHHHC-------CCCHHHHHHHHHS--SEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEhHHHH-----HHHHHHhc----cchHHHHHHHhcCC--CEEEE
Confidence 3578999999999999999999988654 4456666665432 22221100 00112233344433 49999
Q ss_pred ecCCcc--CHHHHHHHH-HhhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 377 DEVDKA--HPDVLTVLL-QLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 377 DEiek~--~~~~~~~Ll-~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
||++.. ++..+..|+ .+++... ..+..+|+|||...+.+..
T Consensus 122 Dei~~~~~~~~~~~~ll~~~l~~~~----------~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 122 DDLGAEAMSSWVRDDVFGPILQYRM----------FENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp EEECCC---CCGGGTTHHHHHHHHH----------HTTCCEEEEESSCHHHHHH
T ss_pred cCCCCCcCCHHHHHHHHHHHHHHHH----------hCCCCEEEEcCCCHHHHHH
Confidence 999664 333455344 3554221 1234689999988887754
No 203
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.08 E-value=4.7e-06 Score=103.55 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=101.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
+++|+||+|||||.+++.+.... ....+..++++.......+.+.+...-..... ..|...+-.......|+|+||
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~---~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~-~~g~~~~P~~~gk~~VlFiDE 1344 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS---SLYDVVGINFSKDTTTEHILSALHRHTNYVTT-SKGLTLLPKSDIKNLVLFCDE 1344 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC---SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEE-TTTEEEEEBSSSSCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHhcC---CCCceEEEEeecCCCHHHHHHHHHHHhhhccc-cCCccccCCCCCceEEEEecc
Confidence 68999999999999996655433 24467888988887766655554321111000 001100000012246999999
Q ss_pred CCccCHH------HHHHHHHhhccceeecC-CCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccC
Q psy1308 379 VDKAHPD------VLTVLLQLFDEGRLTDG-KGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQG 451 (607)
Q Consensus 379 iek~~~~------~~~~Ll~~~~~~~~~~~-~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (607)
++....+ .+..|.++++.|.+.+. .+..+...++.+|+|+|-... .|+
T Consensus 1345 inmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~-----------gGR-------------- 1399 (2695)
T 4akg_A 1345 INLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTD-----------PGR-------------- 1399 (2695)
T ss_dssp TTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTS-----------TTC--------------
T ss_pred cccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCcc-----------CCC--------------
Confidence 8765443 78899999998877764 344556688999999993210 000
Q ss_pred CCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHH
Q psy1308 452 SNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFW 509 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~ 509 (607)
... +|.|++|+ .++.+.+++.+++..|....+...
T Consensus 1400 ---------------------~~l-~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1400 ---------------------IPM-SERFTRHA-AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp ---------------------CCC-CHHHHTTE-EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred ---------------------ccC-Chhhhhee-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 001 27778888 567777789999999988877643
No 204
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.00 E-value=4.1e-06 Score=104.65 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=101.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
+++++||+|||||.+++.....+ .+..++.++++..+....+...+...-.+.....+|.+..........|+|+||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l---~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAF---PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGC---TTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETT
T ss_pred cEEEECCCCCCHHHHHHHHHHhC---CCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecc
Confidence 68999999999998875544332 134578899998887766655553111010000001221111112346999999
Q ss_pred CCccCHH------HHHHHHHhhccceeecC-CCcEEecCceEEEEecCcchHHHHHHHhhhhhcccccccCCCCcccccC
Q psy1308 379 VDKAHPD------VLTVLLQLFDEGRLTDG-KGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQG 451 (607)
Q Consensus 379 iek~~~~------~~~~Ll~~~~~~~~~~~-~g~~~~~~~~~iI~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (607)
+....++ ++..|.+++|.|.+.|. ++..+...++.||+|.|-... .| +
T Consensus 1383 iNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~-----------gG-----r--------- 1437 (3245)
T 3vkg_A 1383 INLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTD-----------AG-----R--------- 1437 (3245)
T ss_dssp TTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTS-----------TT-----C---------
T ss_pred cCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCC-----------CC-----C---------
Confidence 9987765 88999999998888885 344556688999999883210 00 0
Q ss_pred CCcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHH
Q psy1308 452 SNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFW 509 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~ 509 (607)
... +|-|.+|+.. +.+..++.+++..|....+..+
T Consensus 1438 ---------------------~~l-~~Rf~r~F~v-i~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1438 ---------------------VQL-THRFLRHAPI-LLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp ---------------------CCC-CHHHHTTCCE-EECCCCCHHHHHHHHHHHHHHH
T ss_pred ---------------------ccC-CHHHHhhceE-EEeCCCCHHHHHHHHHHHHHHH
Confidence 001 2667777744 5556678999999977766543
No 205
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.97 E-value=8.9e-05 Score=92.32 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=72.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
..++.||+|+|||++++.+|+.+.. ++++++|+.-.+.....++| .++... ++.++|||
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~----~~v~~nc~e~ld~~~lg~~~---------------~g~~~~--Gaw~~~DE 705 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGR----VVVVFNCDDSFDYQVLSRLL---------------VGITQI--GAWGCFDE 705 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTC----CCEEEETTSSCCHHHHHHHH---------------HHHHHH--TCEEEEET
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCC----cEEEEECCCCCChhHhhHHH---------------HHHHhc--CCEeeehh
Confidence 5778999999999999999999855 49999999877665554443 233332 47999999
Q ss_pred CCccCHHHHHHHH-------Hhhccce-eecCCCcEEec-CceEEEEecCc
Q psy1308 379 VDKAHPDVLTVLL-------QLFDEGR-LTDGKGKTIEC-KDAIFVMTSNL 420 (607)
Q Consensus 379 iek~~~~~~~~Ll-------~~~~~~~-~~~~~g~~~~~-~~~~iI~tsn~ 420 (607)
+++++++++..|. ..+.++. .....|.++.. .++.+++|.|-
T Consensus 706 ~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP 756 (2695)
T 4akg_A 706 FNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP 756 (2695)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC
Confidence 9999999999883 3343333 22234555554 45667888884
No 206
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.89 E-value=0.00011 Score=74.50 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=105.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHh----hCCCeEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLK----KCPNAVV 374 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~----~~~~~vl 374 (607)
.++|+||.|.||+..++.+++.+...+..++..+.+. +...+.+++ +.+. .+++-++
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~----------------~~~~~~plf~~~kvv 80 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PNTDWNAIF----------------SLCQAMSLFASRQTL 80 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TTCCHHHHH----------------HHHHHHHHCCSCEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CCCCHHHHH----------------HHhcCcCCccCCeEE
Confidence 7899999999999999999987653322222222221 112222222 2222 1346799
Q ss_pred EEecCCc-cCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecC-cchHHHHHHHhhhhhcccccccCCCCcccccCC
Q psy1308 375 LFDEVDK-AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN-LASNEIAQHALQLRKEGEEFSKRTPSISKSQGS 452 (607)
Q Consensus 375 ~lDEiek-~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (607)
++||++. ++.+.++.|++.+++- ..+++||++++ .+...-
T Consensus 81 ii~~~~~kl~~~~~~aLl~~le~p-----------~~~~~~il~~~~~~~~~~--------------------------- 122 (343)
T 1jr3_D 81 LLLLPENGPNAAINEQLLTLTGLL-----------HDDLLLIVRGNKLSKAQE--------------------------- 122 (343)
T ss_dssp EEECCSSCCCTTHHHHHHHHHTTC-----------BTTEEEEEEESCCCTTTT---------------------------
T ss_pred EEECCCCCCChHHHHHHHHHHhcC-----------CCCeEEEEEcCCCChhhH---------------------------
Confidence 9999999 9999999999999852 13566666654 211000
Q ss_pred CcchhcchhhhhhhhhHHHHhccCChhhhccccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHH
Q psy1308 453 NLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILA 532 (607)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~l~~~f~~~el~~ri~~iv~f~pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~ 532 (607)
...+. +.+.+|. .++.|.|++.+++..++...+.. .| +.++++++++|+
T Consensus 123 -------------------~~k~~-~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~--------~g--~~i~~~a~~~l~ 171 (343)
T 1jr3_D 123 -------------------NAAWF-TALANRS-VQVTCQTPEQAQLPRWVAARAKQ--------LN--LELDDAANQVLC 171 (343)
T ss_dssp -------------------TSHHH-HHHTTTC-EEEEECCCCTTHHHHHHHHHHHH--------TT--CEECHHHHHHHH
T ss_pred -------------------hhHHH-HHHHhCc-eEEEeeCCCHHHHHHHHHHHHHH--------cC--CCCCHHHHHHHH
Confidence 00011 4555666 57899999999998887665531 23 468999999998
Q ss_pred ccCCCCCCccchhHHHHHHH
Q psy1308 533 DGYDVHYGARSIKHEVERQV 552 (607)
Q Consensus 533 ~~~~~~~GaR~L~~~i~~~i 552 (607)
. . ..++.|.+.+.+++..
T Consensus 172 ~-~-~~gdl~~~~~elekl~ 189 (343)
T 1jr3_D 172 Y-C-YEGNLLALAQALERLS 189 (343)
T ss_dssp H-S-STTCHHHHHHHHHHHH
T ss_pred H-H-hchHHHHHHHHHHHHH
Confidence 5 2 2467788888877654
No 207
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.79 E-value=4.4e-05 Score=75.94 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=62.3
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhc-cCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIH-RDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~-~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
..++|+||+|+|||.++++++..+. .. ..++..++++.+ ...+...... | ....+...+.. ..+|+|
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~~~~l-----~~~l~~~~~~--~--~~~~~~~~~~~--~~lLii 220 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLHFPSF-----AIDVKNAISN--G--SVKEEIDAVKN--VPVLIL 220 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEEHHHH-----HHHHHCCCC--------CCTTHHHHT--SSEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEHHHH-----HHHHHHHhcc--c--hHHHHHHHhcC--CCEEEE
Confidence 4789999999999999999999886 54 344555555433 2233221100 0 11122333443 359999
Q ss_pred ecCCcc--CHHHHHHHHH-hhccceeecCCCcEEecCceEEEEecCcchHHHHH
Q psy1308 377 DEVDKA--HPDVLTVLLQ-LFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQ 427 (607)
Q Consensus 377 DEiek~--~~~~~~~Ll~-~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~ 427 (607)
||++.. ++..++.|+. +++... ..+..+|+|||...+.+..
T Consensus 221 Ddig~~~~~~~~~~~ll~~ll~~r~----------~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 221 DDIGAEQATSWVRDEVLQVILQYRM----------LEELPTFFTSNYSFADLER 264 (308)
T ss_dssp ETCCC------CTTTTHHHHHHHHH----------HHTCCEEEEESSCHHHHHT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHHHH
Confidence 999654 3334443443 554221 0233589999998887754
No 208
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.78 E-value=3.7e-05 Score=67.56 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=59.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.+.++||+|+|||.+++.++..+... ....+.++...+... ..+. ...+++|||
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~~~~~-----------------------~~~~--~~~lLilDE 91 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAASMPLT-----------------------DAAF--EAEYLAVDQ 91 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTTSCCC-----------------------GGGG--GCSEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHHhhHH-----------------------HHHh--CCCEEEEeC
Confidence 68899999999999999999987543 222455554433221 1111 246999999
Q ss_pred CCccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcch
Q psy1308 379 VDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLAS 422 (607)
Q Consensus 379 iek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~ 422 (607)
++.+.+..+..|+++++.-. . ....++|+||+...
T Consensus 92 ~~~~~~~~~~~l~~li~~~~--~-------~g~~~iiits~~~p 126 (149)
T 2kjq_A 92 VEKLGNEEQALLFSIFNRFR--N-------SGKGFLLLGSEYTP 126 (149)
T ss_dssp TTCCCSHHHHHHHHHHHHHH--H-------HTCCEEEEEESSCT
T ss_pred ccccChHHHHHHHHHHHHHH--H-------cCCcEEEEECCCCH
Confidence 99998877888888886321 1 11234777888543
No 209
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.67 E-value=0.00039 Score=87.29 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=72.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
...+.||+|||||++++.+|+.+.+ +++.++|+.-.+...+.++| .+++. .++-.+|||
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr----~~~vfnC~~~~d~~~~g~i~---------------~G~~~--~GaW~cfDE 664 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGR----FVLVFCCDEGFDLQAMSRIF---------------VGLCQ--CGAWGCFDE 664 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC----CEEEEECSSCCCHHHHHHHH---------------HHHHH--HTCEEEEET
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCC----eEEEEeCCCCCCHHHHHHHH---------------hhHhh--cCcEEEehh
Confidence 3467899999999999999999965 48999998877666665554 23333 256789999
Q ss_pred CCccCHHHHHHHHHhhc---------cceeecCCCcEEec-CceEEEEecCcc
Q psy1308 379 VDKAHPDVLTVLLQLFD---------EGRLTDGKGKTIEC-KDAIFVMTSNLA 421 (607)
Q Consensus 379 iek~~~~~~~~Ll~~~~---------~~~~~~~~g~~~~~-~~~~iI~tsn~~ 421 (607)
+.+++++++..+.+.+. ..++.-..|.++.. .++.|++|.|-|
T Consensus 665 fNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpg 717 (3245)
T 3vkg_A 665 FNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPG 717 (3245)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCC
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCC
Confidence 99999999999887554 33333333555544 456788888854
No 210
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.52 E-value=0.00095 Score=67.32 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=39.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSE 336 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~ 336 (607)
.++|.+..++.+...+... ..+++.|++|+|||.+++.+++.. +++.+++..
T Consensus 13 ~~~gR~~el~~L~~~l~~~----------~~v~i~G~~G~GKT~Ll~~~~~~~------~~~~~~~~~ 64 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY----------PLTLLLGIRRVGKSSLLRAFLNER------PGILIDCRE 64 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC----------SEEEEECCTTSSHHHHHHHHHHHS------SEEEEEHHH
T ss_pred hcCChHHHHHHHHHHHhcC----------CeEEEECCCcCCHHHHHHHHHHHc------CcEEEEeec
Confidence 5788888888888777541 268899999999999999998764 156666654
No 211
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.38 E-value=0.0014 Score=66.22 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=38.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
.++|.+..++.+.. +.. + .+++.|++|+|||.+++.+++.... ..+.+++...
T Consensus 14 ~~~gR~~el~~L~~-l~~----------~-~v~i~G~~G~GKT~L~~~~~~~~~~----~~~~~~~~~~ 66 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA----------P-ITLVLGLRRTGKSSIIKIGINELNL----PYIYLDLRKF 66 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS----------S-EEEEEESTTSSHHHHHHHHHHHHTC----CEEEEEGGGG
T ss_pred HhcChHHHHHHHHH-hcC----------C-cEEEECCCCCCHHHHHHHHHHhcCC----CEEEEEchhh
Confidence 47788777777655 422 2 6889999999999999999887632 2566776654
No 212
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.16 E-value=0.00021 Score=65.11 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=48.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc--cccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS--EYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLF 376 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a--~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~l 376 (607)
..+++|++|+|||+++..++..+...+.. ...+..+ ...+...+...+|.............+...+. .+..+|++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~-v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKK-VAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCE-EEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 57899999999999985555443222111 1111111 00001111111121111111111112222221 24679999
Q ss_pred ecCCccCHHHHHHHHHhhcc
Q psy1308 377 DEVDKAHPDVLTVLLQLFDE 396 (607)
Q Consensus 377 DEiek~~~~~~~~Ll~~~~~ 396 (607)
||+..+++++++.|..+.++
T Consensus 83 DE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHHHC
Confidence 99999998888888888764
No 213
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.02 E-value=0.0016 Score=59.49 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=22.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.++++||+|+|||.++..+++.+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998743
No 214
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.00 E-value=0.003 Score=60.44 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=50.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.++|+||+|+|||.++++|+..+... -.++.+.. . ..+.+ ....-+++.||
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~-----G~vn~~~~---~------------------f~l~~---~~~k~i~l~Ee 156 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFY-----GCVNWTNE---N------------------FPFND---CVDKMVIWWEE 156 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCE-----EECCTTCS---S------------------CTTGG---GSSCSEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccc-----ceeecccc---c------------------ccccc---ccccEEEEecc
Confidence 69999999999999999999863211 11122110 0 01111 01123455555
Q ss_pred CCccCHHHHHHHHHhhccceee-cCC-CcEEecCceEEEEecCcc
Q psy1308 379 VDKAHPDVLTVLLQLFDEGRLT-DGK-GKTIECKDAIFVMTSNLA 421 (607)
Q Consensus 379 iek~~~~~~~~Ll~~~~~~~~~-~~~-g~~~~~~~~~iI~tsn~~ 421 (607)
.. +..+.+..+-.+++-+.+. |.. ........+-+|+|||.+
T Consensus 157 ~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~ 200 (267)
T 1u0j_A 157 GK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTN 200 (267)
T ss_dssp CC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSC
T ss_pred cc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCC
Confidence 44 5556667777777633333 221 112244667899999953
No 215
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=0.0019 Score=50.81 Aligned_cols=88 Identities=9% Similarity=-0.006 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCHhHHHHHHccCCCCCCccchhHHHHHHHHHHHHHHHHh-ccCCCCCE
Q psy1308 492 PFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEK-SVIGKGSF 570 (607)
Q Consensus 492 pl~~~~~~~i~~~~l~~~~~~~~~~~~i~l~~~~~a~~~L~~~~~~~~GaR~L~~~i~~~i~~~l~~~~l~-~~~~~~~~ 570 (607)
.++.+|-..|+.++|-.-+-+-.....-.+.++++|+..|...|..+.|+|.|++.|....... +..++. +. ...
T Consensus 2 GYt~~EK~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTREaGVRnLer~i~~i~RK~-a~~i~~~~~---~~~ 77 (94)
T 1qzm_A 2 GYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKA-VKQLLLDKS---LKH 77 (94)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHH-HHHHHTCTT---CCC
T ss_pred CCCHHHHHHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHHhcccccchHHHHHHHHHHHHH-HHHHHHcCC---CCC
Confidence 4678999999999997544332222233699999999999878999999999999999866554 445553 32 245
Q ss_pred EEEEEecCCcccc
Q psy1308 571 VRLYVQWSKEVSE 583 (607)
Q Consensus 571 v~i~~~~~~~~~~ 583 (607)
++|+.++-..+++
T Consensus 78 v~v~~~~l~~~LG 90 (94)
T 1qzm_A 78 IEINGDNLHDYLG 90 (94)
T ss_dssp EEECTTTTHHHHC
T ss_pred eeECHHHHHHHcC
Confidence 6776666655553
No 216
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.59 E-value=0.0038 Score=58.43 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=53.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc-ccchhHhhhcCCCCCccCCCCchhhHHHhh----CCCeE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ-EKHEVAKLIGAPPGYLGHDDGGQLTKRLKK----CPNAV 373 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~-~~~~~~~llg~~~g~~g~~~~~~l~~~~~~----~~~~v 373 (607)
..+++|++|+|||+++..++..+...+.. ...+....-. +...+..-+|-............+...++. .+..+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~k-Vli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVK-YLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCC-EEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCE-EEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 67889999999999988777665443222 2222211111 111222222321111111122234455554 24679
Q ss_pred EEEecCCccCHHHHHHHHHhhc
Q psy1308 374 VLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 374 l~lDEiek~~~~~~~~Ll~~~~ 395 (607)
|++||+.-+++++...+..+.+
T Consensus 93 ViIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 93 IGIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp EEECSGGGSCTHHHHHHHHHHH
T ss_pred EEEecCccCcHHHHHHHHHHHh
Confidence 9999999999887777766554
No 217
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.22 E-value=0.0056 Score=64.41 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc----------cccc
Q psy1308 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY----------QEKH 341 (607)
Q Consensus 272 Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~----------~~~~ 341 (607)
+|..++..+...+.... + .+++.|++|||||.++..++..+...+......+-.+.. ....
T Consensus 29 ~Q~~av~~~~~~i~~~~--------~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~ 99 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK--------H-HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEAS 99 (459)
T ss_dssp HHHHHHHHHHHHHHSSS--------C-EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHhcCC--------C-EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchh
Confidence 57788887766665321 1 789999999999999999998886542222322211110 0111
Q ss_pred hhHhhhcCCCCCccCCCCchh--hHHHhhCCCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 342 EVAKLIGAPPGYLGHDDGGQL--TKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 342 ~~~~llg~~~g~~g~~~~~~l--~~~~~~~~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
.+.++++..+...+ ....+ ...-......++++||+..+++..+..|++.+.
T Consensus 100 T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 100 TIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp EHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred hHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 12233331111000 00000 000011246799999999999999999999886
No 218
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.07 E-value=0.018 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.||+|+|||++.+.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999998863
No 219
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.92 E-value=0.025 Score=55.53 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=39.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCC---chhhHHHhhCCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG---GQLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~---~~l~~~~~~~~~~vl~ 375 (607)
.+++.||+|+|||.++..++.. ... .-.|+.+...+. + .. +. .+.. ..+.+.+...+ +|+
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~-~VlyIs~~~eE~-----v-~~------~~-~~le~~l~~i~~~l~~~~--LLV 187 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGG-KDKYATVRFGEP-----L-SG------YN-TDFNVFVDDIARAMLQHR--VIV 187 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHT-TSCCEEEEBSCS-----S-TT------CB-CCHHHHHHHHHHHHHHCS--EEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCC-CEEEEEecchhh-----h-hh------hh-cCHHHHHHHHHHHHhhCC--EEE
Confidence 5689999999999999999876 211 234555522211 0 00 00 0000 01334455544 999
Q ss_pred EecCCccCH
Q psy1308 376 FDEVDKAHP 384 (607)
Q Consensus 376 lDEiek~~~ 384 (607)
|||+..+.+
T Consensus 188 IDsI~aL~~ 196 (331)
T 2vhj_A 188 IDSLKNVIG 196 (331)
T ss_dssp EECCTTTC-
T ss_pred Eeccccccc
Confidence 999998754
No 220
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.91 E-value=0.0059 Score=55.67 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=48.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee--c-ccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD--M-SEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~--~-a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~ 375 (607)
..+++|+.|+|||+.+..++......+.. ...+. . ..+.. ..+..-+|......+......+...+. .+..+|+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~k-V~v~k~~~d~r~~~-~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvVi 86 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQK-IQVFKPEIDNRYSK-EDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIA 86 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEEEC--------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCE-EEEEEeccCccchH-HHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEE
Confidence 67899999999997776666554332222 22221 1 11211 112222221111111111222322222 2468999
Q ss_pred EecCCccCHHHHHHHHHhhcc
Q psy1308 376 FDEVDKAHPDVLTVLLQLFDE 396 (607)
Q Consensus 376 lDEiek~~~~~~~~Ll~~~~~ 396 (607)
+||+.-++++.+..|..+.+.
T Consensus 87 IDEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 87 IDEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp ECSGGGSCTHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 999999988888777666553
No 221
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.76 E-value=0.011 Score=54.56 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=46.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecc---cccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMS---EYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVL 375 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a---~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~ 375 (607)
..+++|+.|+|||+.+..++......+.. ...+..+ .+. ...+..-+|......+......+...+. .+..+|+
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~k-Vli~k~~~d~R~g-e~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvVi 106 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQH-AIVFKPCIDNRYS-EEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVIA 106 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCC-EEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCE-EEEEEeccCCcch-HHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEEE
Confidence 66789999999997776665554333222 2222211 111 1122222232221111112222322222 2468999
Q ss_pred EecCCccCHHHHHHHHHhhc
Q psy1308 376 FDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 376 lDEiek~~~~~~~~Ll~~~~ 395 (607)
+||+.-++++.++.|..+.+
T Consensus 107 IDEaQF~~~~~V~~l~~l~~ 126 (214)
T 2j9r_A 107 IDEVQFFDGDIVEVVQVLAN 126 (214)
T ss_dssp ECCGGGSCTTHHHHHHHHHH
T ss_pred EECcccCCHHHHHHHHHHhh
Confidence 99999999888877666554
No 222
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.10 E-value=0.024 Score=57.14 Aligned_cols=93 Identities=18% Similarity=0.343 Sum_probs=50.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEe-ecccccccchhHhhhcCCCCCccCCC---CchhhHHHhhCCCeEE
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRL-DMSEYQEKHEVAKLIGAPPGYLGHDD---GGQLTKRLKKCPNAVV 374 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l-~~a~~~~~~~~~~llg~~~g~~g~~~---~~~l~~~~~~~~~~vl 374 (607)
.+++.||+|+|||++.+.+...+........+.+ |-.++...... .++.. ..++... ...+...++. ...++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-~~v~q--~~~~~~~~~~~~~La~aL~~-~Pdvi 200 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-CLVNQ--REVHRDTLGFSEALRSALRE-DPDII 200 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-SEEEE--EEBTTTBSCHHHHHHHHTTS-CCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-cceee--eeeccccCCHHHHHHHHhhh-CcCEE
Confidence 6899999999999999999988754312222222 22222111000 00000 0001000 1123344443 45799
Q ss_pred EEecCCccCHHHHHHHHHhhccc
Q psy1308 375 LFDEVDKAHPDVLTVLLQLFDEG 397 (607)
Q Consensus 375 ~lDEiek~~~~~~~~Ll~~~~~~ 397 (607)
++||+- +++....+++..+.|
T Consensus 201 llDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 201 LVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp EESCCC--SHHHHHHHHHHHHTT
T ss_pred ecCCCC--CHHHHHHHHHHHhcC
Confidence 999997 577788888876543
No 223
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.96 E-value=0.02 Score=52.66 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=50.7
Q ss_pred ceeeeeccCCCChhH-HHHHHHHHhccCcCCceEEeecc--cccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEE
Q psy1308 298 LVFLFLGSSGIGKTE-LAKQLAFYIHRDKKEAFIRLDMS--EYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVV 374 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~-la~~la~~l~~~~~~~~~~l~~a--~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl 374 (607)
...+++|+.|+|||+ +.+.+.++.... .. ...+..+ .-.+...+..=+|......-......+...+ ..+..+|
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g-~k-vli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV 105 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAK-QK-VVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVI 105 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-CC-EEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-Cc-eEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEE
Confidence 467889999999998 667766655432 22 2222111 1111111221122111100011112232222 2356799
Q ss_pred EEecCCccCHHHHHHHHHhhccce
Q psy1308 375 LFDEVDKAHPDVLTVLLQLFDEGR 398 (607)
Q Consensus 375 ~lDEiek~~~~~~~~Ll~~~~~~~ 398 (607)
++||+.=+++++.+.|..+.+.|.
T Consensus 106 ~IDEaQFf~~~~v~~l~~la~~gi 129 (219)
T 3e2i_A 106 GIDEVQFFDDEIVSIVEKLSADGH 129 (219)
T ss_dssp EECCGGGSCTHHHHHHHHHHHTTC
T ss_pred EEechhcCCHHHHHHHHHHHHCCC
Confidence 999999999999998888876443
No 224
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.86 E-value=0.43 Score=51.12 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHH
Q psy1308 271 VGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 271 ~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
+|.+..++.+...+..... ..+.++.++|+.|+|||.||+.++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~-----~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD-----LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT-----SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC-----CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5888889988888854421 1234788999999999999999986
No 225
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.55 E-value=0.14 Score=47.52 Aligned_cols=83 Identities=24% Similarity=0.234 Sum_probs=47.7
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCC----C---CccCCCC-chhhHHHhh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP----G---YLGHDDG-GQLTKRLKK 368 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~----g---~~g~~~~-~~l~~~~~~ 368 (607)
.+.+++.|++|+|||.++-.++..+... ......+++... +......++..-+ + |.|.... ..+...+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q-~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~ 83 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETH-GRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA 83 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCT-TCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCC-CChhHHHHhcCccccCcceeecCCcccccccHHHHHhc
Confidence 4578899999999999999888887554 233444455442 2333333332111 1 1111111 233443444
Q ss_pred CCCeEEEEecCCcc
Q psy1308 369 CPNAVVLFDEVDKA 382 (607)
Q Consensus 369 ~~~~vl~lDEiek~ 382 (607)
...++++||+...
T Consensus 84 -~pdlvIVDElG~~ 96 (228)
T 2r8r_A 84 -APSLVLVDELAHT 96 (228)
T ss_dssp -CCSEEEESCTTCB
T ss_pred -CCCEEEEeCCCCC
Confidence 4579999998865
No 226
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.49 E-value=0.046 Score=58.89 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=53.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccc----------ccccchhHhhhcCCCCCccCCCCchhhHHHhh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSE----------YQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK 368 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~----------~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~ 368 (607)
.+++.|++|||||.+++.++..+... ......+-.+. -.....+.++++..+. ++... .-..
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~~-----~~~~ 277 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRHN-----HLEP 277 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESCS-----SSSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhhh-----hccc
Confidence 68899999999999999999887554 22222111100 0011223445543220 11000 0011
Q ss_pred CCCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 369 CPNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 369 ~~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
.+..+|++||+..++......|++.+.
T Consensus 278 ~~~dvlIIDEasml~~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDALMLSLLAAVP 304 (574)
T ss_dssp CSCSEEEECCGGGCCHHHHHHHHTTSC
T ss_pred ccCCEEEEcCccCCCHHHHHHHHHhCc
Confidence 246799999999999999999988775
No 227
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.41 E-value=0.09 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=20.3
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+...+++|++|+|||.++..++...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578899999999999998765443
No 228
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.34 E-value=0.028 Score=50.93 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=49.5
Q ss_pred eeeeeccCCCChh-HHHHHHHHHhccCcCCceEEeecc---cccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEE
Q psy1308 299 VFLFLGSSGIGKT-ELAKQLAFYIHRDKKEAFIRLDMS---EYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVV 374 (607)
Q Consensus 299 ~~ll~G~~G~GKt-~la~~la~~l~~~~~~~~~~l~~a---~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl 374 (607)
..+++|+.|+||| +|.+.+..+.... .....+..+ .+. .. ++.-+|.............+....+ +..+|
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~--~kvl~~kp~~D~R~~-~~-i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvI 95 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYAKDTRYS-SS-FCTHDRNTMEALPACLLRDVAQEAL--GVAVI 95 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEETTCCCGG-GS-CCHHHHHHSEEEEESSGGGGHHHHH--TCSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEccccCccch-hh-hhhccCCcccceecCCHHHHHHhcc--CCCEE
Confidence 6788999999999 9999998886553 222223222 222 11 2222221100000112223333332 35799
Q ss_pred EEecCCccCHHHHHHHHHhhcc
Q psy1308 375 LFDEVDKAHPDVLTVLLQLFDE 396 (607)
Q Consensus 375 ~lDEiek~~~~~~~~Ll~~~~~ 396 (607)
++||+.=+ ++....+-.+.+.
T Consensus 96 lIDEaQFf-k~~ve~~~~L~~~ 116 (195)
T 1w4r_A 96 GIDEGQFF-PDIVEFCEAMANA 116 (195)
T ss_dssp EESSGGGC-TTHHHHHHHHHHT
T ss_pred EEEchhhh-HHHHHHHHHHHHC
Confidence 99999999 7755555444443
No 229
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.22 E-value=0.097 Score=51.00 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=29.8
Q ss_pred CCCCCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 292 TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 292 ~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
....+|..+++.|++|+|||++++.+++.+. .++..++.
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 4445677899999999999999999998653 23555654
No 230
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.17 E-value=0.47 Score=48.89 Aligned_cols=118 Identities=14% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc-----hhHhhhcCC--CCCccCCCCchhhH---H
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH-----EVAKLIGAP--PGYLGHDDGGQLTK---R 365 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~-----~~~~llg~~--~g~~g~~~~~~l~~---~ 365 (607)
+|.+++++|++|+|||+++..|+..+... ......+++..+.... ...+..|.+ ..+.+.+....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDY 177 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999888654 3334445554443211 011112211 00111111111112 2
Q ss_pred HhhCCCeEEEEecCCccCH--HHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHH
Q psy1308 366 LKKCPNAVVLFDEVDKAHP--DVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424 (607)
Q Consensus 366 ~~~~~~~vl~lDEiek~~~--~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~ 424 (607)
++...+.++++|.....+. .....|..+... +....+++++-+..+...
T Consensus 178 a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~----------~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 178 FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNV----------IHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH----------HCCSEEEEEEEGGGGGGH
T ss_pred HHhCCCCEEEEECCCcccchHHHHHHHHHHHHh----------hcCceEEEEEeCCCchhH
Confidence 3334578999999988763 344444333221 012346677766656544
No 231
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.94 E-value=0.23 Score=53.75 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=34.9
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHH
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
.++|.+..++.+...+.... ..+-.+.++|+.|+|||.+++.++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLK------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTST------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhccc------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 48899999888887775321 1234788999999999999998864
No 232
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.77 E-value=0.11 Score=48.23 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=43.0
Q ss_pred eeeeeccCCCChhH-HHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEe
Q psy1308 299 VFLFLGSSGIGKTE-LAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD 377 (607)
Q Consensus 299 ~~ll~G~~G~GKt~-la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lD 377 (607)
..+++|+.|+|||+ +.+.+.++.....+--++......-.+ ..+..-+|......+......+...+ .+..+|++|
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 67889999999994 455555554332111112211211111 22222223221111111222233333 456899999
Q ss_pred cCCccCHHHHHHHHHhhc
Q psy1308 378 EVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 378 Eiek~~~~~~~~Ll~~~~ 395 (607)
|+.-+.. ...+.+.++
T Consensus 98 EaQF~~~--v~el~~~l~ 113 (234)
T 2orv_A 98 EGQFFPD--IVEFCEAMA 113 (234)
T ss_dssp SGGGCTT--HHHHHHHHH
T ss_pred chhhhhh--HHHHHHHHH
Confidence 9998864 455556665
No 233
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.63 E-value=0.42 Score=49.19 Aligned_cols=116 Identities=17% Similarity=0.343 Sum_probs=62.0
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc--h---hHhhhcCCCCCccCCCCch---hhHHHh
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH--E---VAKLIGAPPGYLGHDDGGQ---LTKRLK 367 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~--~---~~~llg~~~g~~g~~~~~~---l~~~~~ 367 (607)
+|.++++.|++|+|||+++..|+..+... .....-+++..+.... . .....|. +-|........ ....+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv-~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGV-QVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTC-CEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcCC-ceeeccccCCHHHHHHHHHH
Confidence 46689999999999999999999888654 2333334444333211 0 1122221 11111111111 122233
Q ss_pred h---CCCeEEEEecCCccC----HHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchH
Q psy1308 368 K---CPNAVVLFDEVDKAH----PDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASN 423 (607)
Q Consensus 368 ~---~~~~vl~lDEiek~~----~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~ 423 (607)
. ..+.++++|.....+ +.....+..+...- ....+++++.+..+.+
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~----------~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL----------KPDDVILVIDASIGQK 226 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH----------CCSEEEEEEEGGGGGG
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh----------CCcceEEEEeCccchH
Confidence 3 357899999998865 33444444433211 1235667777766654
No 234
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.55 E-value=0.025 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||++.+.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 467899999999999999998874
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.39 E-value=0.1 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+++.||+|+|||++.+.++..+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCCC
Confidence 7899999999999999999988743
No 236
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.26 E-value=0.17 Score=60.73 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=49.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCC-CccCC--CC----chhhHHHhhCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG-YLGHD--DG----GQLTKRLKKCPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g-~~g~~--~~----~~l~~~~~~~~~ 371 (607)
.++++||+|||||.+|++++...... ..+.+-++..... +....+-||.... +++.. .+ ..+....+....
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~-g~~~~fi~~~~~~-~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~ 1161 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHAL-DPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1161 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCC-CHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhc-CCceeEEEcccch-HHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCC
Confidence 68999999999999999998766443 4555555554322 1222233332211 22220 01 122334456778
Q ss_pred eEEEEecCCccCH
Q psy1308 372 AVVLFDEVDKAHP 384 (607)
Q Consensus 372 ~vl~lDEiek~~~ 384 (607)
+++++||++.+-|
T Consensus 1162 ~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1162 DVIVVDSVAALTP 1174 (1706)
T ss_dssp SEEEESCGGGCCC
T ss_pred eEEEeCchHhcCc
Confidence 9999999875433
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.13 E-value=0.086 Score=47.01 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=27.0
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
|..+++.|++|+|||++++.|++.+.. +++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~----~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE----PWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS----CEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC----CeEEecc
Confidence 346889999999999999999988743 4665544
No 238
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.44 E-value=0.17 Score=54.96 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 370 PNAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 370 ~~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
+..++++||++.++......|++.+.
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~ 287 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALP 287 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCC
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCC
Confidence 45799999999999888888888764
No 239
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.44 E-value=0.17 Score=48.18 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCCCCCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 292 TDDDHPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 292 ~~~~~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.....|..+++.|++|+|||++++.|++.+.
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CcccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3445567899999999999999999998764
No 240
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.93 E-value=0.12 Score=47.19 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=25.6
Q ss_pred CCCCCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 293 DDDHPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 293 ~~~~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+|..+++.|++|+|||++++.|++.+.
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345567899999999999999999998763
No 241
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.84 E-value=0.22 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+++.||+|+|||++.+.++..+..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCc
Confidence 7899999999999999999988754
No 242
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.76 E-value=0.17 Score=50.35 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=26.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+++.||+|+|||++.+.++..+.. ..+.+.++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~ 205 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIE 205 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEEC
Confidence 5889999999999999999987654 34556665
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.55 E-value=0.13 Score=46.13 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.3
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
..+++.|++|+|||++++.|++.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999998874
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.17 E-value=0.34 Score=47.13 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 276 AINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 276 ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.++.+...+..... ....+|..+.+.|++|+|||++++.|+..+..
T Consensus 12 ~~~~l~~~i~~~~~--~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 12 TIEFLDKYIPEWFE--TGNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp HHHHHHHHHHHHHT--TTCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh--ccCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44445444444321 23345778999999999999999999998854
No 245
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.12 E-value=0.15 Score=45.94 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+|..+++.|++|+|||++++.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999999876
No 246
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.02 E-value=0.13 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.8
Q ss_pred CceeeeeccCCCChhHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~ 319 (607)
|..+++.|++|+|||++++.|++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 45688999999999999999997
No 247
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.97 E-value=0.51 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=19.2
Q ss_pred eeeeccCCCChhHHHHHHHHHh
Q psy1308 300 FLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++||+|+|||.++..++...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7889999999999998887665
No 248
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.87 E-value=0.17 Score=46.07 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+++.|++|+|||++++.|++.+.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 788999999999999999998873
No 249
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.86 E-value=1.7 Score=51.27 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=35.8
Q ss_pred HhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHH
Q psy1308 269 RIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 269 ~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
.++|.+..++.+...+.... ..+..+.++|+.|+|||.||+.++..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhcc------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 48899999998888775432 12447889999999999999887654
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.80 E-value=0.47 Score=43.24 Aligned_cols=40 Identities=30% Similarity=0.295 Sum_probs=28.9
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSE 336 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~ 336 (607)
++..+.+.|++|+|||++++.++..+... ....+.+++..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEeccCc
Confidence 45689999999999999999999887433 22344444433
No 251
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.64 E-value=0.19 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.++++||+|+|||.+++.|++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999998774
No 252
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.62 E-value=0.22 Score=48.58 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.|..+++.||+|+|||.++..+++.+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 355788999999999999999998864
No 253
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.59 E-value=0.12 Score=46.26 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+|..+++.|++|+|||++++.|++.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999999999998764
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.37 E-value=0.17 Score=44.64 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+++.|++|+|||++++.|++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 255
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.29 E-value=0.19 Score=45.93 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+++.|++|+|||++++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4478899999999999999999876
No 256
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.20 E-value=0.18 Score=45.43 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.7
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
|..+++.|++|+|||++++.|++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999999876
No 257
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.18 E-value=0.21 Score=45.57 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=23.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+.+.|++|+|||++++.|+..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44788999999999999999999886
No 258
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.15 E-value=0.37 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.5
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+.+.||+|+|||.+++.++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7889999999999999999985
No 259
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.07 E-value=0.19 Score=45.14 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
+..+++.|++|+|||++++.|++.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346889999999999999999998753
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.90 E-value=0.26 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+.+.||+|+|||++++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45889999999999999999999875
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.80 E-value=0.25 Score=44.10 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+++.|++|+|||.+++.+++.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998773
No 262
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.79 E-value=0.26 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=21.6
Q ss_pred ceeeeeccCCCChhHHHHHHHHHh
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l 321 (607)
..+.+.|++|+|||.+++.++..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 378899999999999999999865
No 263
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.75 E-value=0.19 Score=46.60 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+|..+++.|++|+|||++++.|++.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355788999999999999999998874
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.72 E-value=0.22 Score=46.15 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.2
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..++|.|++|+|||++++.|++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 55789999999999999999998773
No 265
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.68 E-value=0.38 Score=43.11 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
+..+.+.|++|+|||++++.+++.+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4578899999999999999999988643
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.67 E-value=0.18 Score=44.59 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.++|++|+|||++++.|+..+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 267
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.66 E-value=0.23 Score=46.91 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+|..+++.|++|+|||++++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999866
No 268
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.66 E-value=0.18 Score=49.89 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+++.||+|+|||.|+..||+.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 34788999999999999999998764
No 269
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.62 E-value=0.24 Score=45.18 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCCCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 294 DDHPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 294 ~~~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+.++..+.+.|++|+|||++++.|++.+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4455678999999999999999999765
No 270
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.60 E-value=0.22 Score=44.95 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.0
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+.+.|++|+|||++++.|++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998763
No 271
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.56 E-value=0.27 Score=45.49 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.4
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+|-.+++.||||+||++.++.|++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578889999999999999999876
No 272
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.52 E-value=1.4 Score=41.19 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=16.0
Q ss_pred eeeeeccCCCChhHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLA 318 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la 318 (607)
.+++.|++|+|||.+...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 58899999999997665443
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.44 E-value=0.2 Score=45.87 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.3
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+++.||+|+|||++++.|++.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4478899999999999999999876
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.44 E-value=0.33 Score=43.57 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=25.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+++.|++|+|||++++.|++.+... ...+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEE
Confidence 47899999999999999999988643 22344443
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.37 E-value=0.27 Score=44.08 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=27.1
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
+..++++|++|+|||.+++.+++.+. ++..+|+..+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~-----g~~~id~d~~ 45 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKL 45 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHST-----TEEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC-----CCEEeeHHHH
Confidence 44789999999999999999998721 2555565443
No 276
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.23 E-value=0.24 Score=44.32 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+++.|++|+|||++++.|++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 277
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.21 E-value=0.21 Score=46.58 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+|..+++.|++|+|||++++.|++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999999876
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.19 E-value=0.25 Score=45.17 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.3
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
+..+++.|++|+|||++++.|++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4578899999999999999999987553
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.13 E-value=0.24 Score=45.55 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+.+.||+|+|||++++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34788999999999999999998753
No 280
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.12 E-value=0.66 Score=45.68 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=38.0
Q ss_pred cccHHHHHHhHhhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 259 KYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 259 ~~~L~~~l~~~i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
..||...+.- ..+.......+...+... ....+|..+.+.||+|+|||++++.|...+.
T Consensus 59 y~pl~rll~~-~~~~~~~l~~~~~~~l~~----~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 59 YLPLSRLLSF-YVTARQTLQQATYQFLGK----PEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHTC----CCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-hhcchHHHHHHHHHHhcc----CCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455443333 344444444444333322 2345678899999999999999999998875
No 281
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.07 E-value=0.29 Score=43.96 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
|..+.+.|++|+|||++++.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.05 E-value=0.27 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=21.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++++.|....
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999865
No 283
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.97 E-value=0.23 Score=44.07 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+++.|++|+|||++++.|++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478899999999999999998773
No 284
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.94 E-value=0.27 Score=46.10 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+|..+.+.||+|+|||++++.|++.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998763
No 285
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.93 E-value=0.31 Score=48.00 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.4
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
..++++||+|+|||.+++.|++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999998774
No 286
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.93 E-value=0.28 Score=44.73 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=26.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
+..+.+.|++|+|||++++.|+..+ +.+.++...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 3478899999999999999999876 2455554443
No 287
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.90 E-value=0.29 Score=45.89 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
++..++|.|++|+|||++++.|++.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999998873
No 288
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.70 E-value=0.39 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.568 Sum_probs=23.1
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+++.|++|+|||.+++.|++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999864
No 289
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.65 E-value=0.25 Score=44.26 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=22.2
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+.+.|++|+|||++++.|++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 290
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.64 E-value=2.4 Score=38.25 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=61.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecc-cccccchhHhhhc-----CCCCCccCCCCc---------h-
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMS-EYQEKHEVAKLIG-----APPGYLGHDDGG---------Q- 361 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a-~~~~~~~~~~llg-----~~~g~~g~~~~~---------~- 361 (607)
.+++++.+|.|||.+|-.++--....+ .-.++.+.-+ ...+.....+-++ ...|++-..+.. .
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 466777888999999987776543332 2222322222 1112222222222 112333211100 0
Q ss_pred --hhHHHhhCCCeEEEEecC------CccCHHHHHHHHHhhccceeecCCCcEEecCceEEEEecCcchHHHHHH
Q psy1308 362 --LTKRLKKCPNAVVLFDEV------DKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428 (607)
Q Consensus 362 --l~~~~~~~~~~vl~lDEi------ek~~~~~~~~Ll~~~~~~~~~~~~g~~~~~~~~~iI~tsn~~~~~i~~~ 428 (607)
..+.+....+.+|+|||+ +-++.+ .+++++.+. +.+.-+|+|+|..++.+.+.
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~R-----------p~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNAR-----------PGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTS-----------CTTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhC-----------cCCCEEEEECCCCcHHHHHh
Confidence 112233345899999998 444543 355555421 24556999999999988774
No 291
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.64 E-value=0.85 Score=45.59 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=45.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCC---ccCCCCchhhH----HHhhCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGY---LGHDDGGQLTK----RLKKCPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~---~g~~~~~~l~~----~~~~~~~ 371 (607)
.+++.|++|+|||.++..++...... ......++...-. .....+-+|..... ........+.. +++....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~-~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHAL-DPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCC-CHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCc-CHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 68899999999999999998765433 2334444443211 11223334432110 00001112222 2334457
Q ss_pred eEEEEecCCccC
Q psy1308 372 AVVLFDEVDKAH 383 (607)
Q Consensus 372 ~vl~lDEiek~~ 383 (607)
.+|++|++..+.
T Consensus 141 ~lIVIDsl~~l~ 152 (349)
T 2zr9_A 141 DIIVIDSVAALV 152 (349)
T ss_dssp SEEEEECGGGCC
T ss_pred CEEEEcChHhhc
Confidence 899999998875
No 292
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.58 E-value=0.45 Score=42.31 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=27.3
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
+..+.+.|++|+|||++++.++..+... ..+++.+|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEEC
Confidence 3478899999999999999999987432 33455555
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.53 E-value=0.3 Score=44.83 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
+|..+.+.|++|+|||++++.|++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999998754
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.51 E-value=1.8 Score=45.11 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=27.6
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
++-.++++|++|+|||.+++.|+..+... .+-+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEe
Confidence 34589999999999999999999887543 3344553
No 295
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.30 E-value=0.33 Score=42.65 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=22.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||++++.|++.+.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998774
No 296
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.29 E-value=0.29 Score=44.34 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
|..+.+.|++|+|||++++.|++.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
No 297
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.26 E-value=0.31 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.7
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
|..+.+.|++|+|||++++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999999776
No 298
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.25 E-value=0.41 Score=58.32 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=47.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCC-------CccCCCCchhhHHHhhC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG-------YLGHDDGGQLTKRLKKC 369 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g-------~~g~~~~~~l~~~~~~~ 369 (607)
+..++++||+|+|||.||..++...... .....-++....-.... .+-+|.+-. +.+.+....+...++..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 3489999999999999999988776543 33344444443322222 333331100 00000011223345557
Q ss_pred CCeEEEEecCCccC
Q psy1308 370 PNAVVLFDEVDKAH 383 (607)
Q Consensus 370 ~~~vl~lDEiek~~ 383 (607)
...+|+|||++-+-
T Consensus 1505 ~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALT 1518 (2050)
T ss_dssp CCSEEEESCGGGCC
T ss_pred CCCEEEEcChhHhc
Confidence 78899999997443
No 299
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.16 E-value=1.4 Score=43.63 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=25.0
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+|-.+.+.||+|+|||++++.|+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34568999999999999999999988754
No 300
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.98 E-value=0.32 Score=44.55 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
++..+.+.|++|+|||++++.|++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999998754
No 301
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.96 E-value=0.31 Score=43.87 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=25.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
+..+.+.|++|+|||++++.|+... ..+.+.++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~ 42 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHS 42 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcc
Confidence 3478899999999999999998752 334555553
No 302
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.91 E-value=0.33 Score=44.59 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=20.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.++|.||||+||++.++.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999876
No 303
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.84 E-value=0.34 Score=47.35 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+++.||+|+|||.++..|++.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 34678999999999999999998764
No 304
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.80 E-value=3.2 Score=40.37 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.2
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+-.+.+.||+|+|||++++.|+..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999988754
No 305
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.66 E-value=0.32 Score=42.81 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=19.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.|++|+|||++++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999999 543
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.65 E-value=0.33 Score=44.06 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.9
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHH
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+|..+.+.|++|+|||++++.|++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999974
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.48 E-value=0.34 Score=44.06 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.7
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+.+.|++|+|||++++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999999876
No 308
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=87.46 E-value=1.7 Score=46.83 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 273 QESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 273 q~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
|..++..+...+.... -.+++.+++|+|||..+-.++..+
T Consensus 183 Q~~ai~~~~~~~~~~~---------~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK---------KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp HHHHHHHHHHHHHTTC---------SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---------CceEEEecCCCChHHHHHHHHHHH
Confidence 7777777766654321 246788999999999987777655
No 309
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.35 E-value=0.37 Score=45.75 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+|..+.+.|++|+|||++++.|++.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3466899999999999999999999764
No 310
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.29 E-value=1.1 Score=44.69 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=47.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCC--Ccc-CCCCchhhH----HHhhCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG--YLG-HDDGGQLTK----RLKKCPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g--~~g-~~~~~~l~~----~~~~~~~ 371 (607)
.+++.||+|+|||.++..++..+... ......++....... ...+-+|..+. +.- ......+.. .++....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~-~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDP-VYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV 140 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCH-HHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccch-HHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence 78899999999999999999876543 233444544332221 13333343221 000 011112222 2233556
Q ss_pred eEEEEecCCccCH
Q psy1308 372 AVVLFDEVDKAHP 384 (607)
Q Consensus 372 ~vl~lDEiek~~~ 384 (607)
.++++|.+..+.+
T Consensus 141 dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 141 DLIVVDSVAALVP 153 (356)
T ss_dssp SEEEEECTTTCCC
T ss_pred CeEEehHhhhhcC
Confidence 7999999988765
No 311
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.17 E-value=0.35 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+++.|++|+|||++++.|++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 312
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.16 E-value=0.32 Score=44.95 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..++|.|++|+|||++++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999999877
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.10 E-value=0.42 Score=44.27 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.7
Q ss_pred ceeeeeccCCCChhHHHHHHHHHh
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l 321 (607)
..+.+.|++|+|||++++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999865
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.98 E-value=0.36 Score=43.93 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.1
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+.+.|++|+|||++++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3478899999999999999999876
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.92 E-value=0.35 Score=43.44 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.||+|+|||++++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999998764
No 316
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.81 E-value=0.49 Score=43.00 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+.+.||+|+|||.|++.|.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3478899999999999999998764
No 317
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.65 E-value=0.42 Score=43.75 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.0
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+..+.+.|++|+|||++++.|+..+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44788999999999999999998764
No 318
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.46 E-value=0.42 Score=43.34 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||++++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 467899999999999999999874
No 319
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.44 E-value=0.43 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.|++|+|||++++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998876
No 320
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.26 E-value=0.5 Score=42.94 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68899999999999999999874
No 321
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.18 E-value=0.46 Score=41.60 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||++++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 322
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=86.13 E-value=2.3 Score=44.30 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=24.8
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
..|..++++|.+|+|||.+++.+++.+..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34668899999999999999999998754
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.07 E-value=0.43 Score=43.95 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.|++|+|||++++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998765
No 324
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.99 E-value=0.8 Score=45.56 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=22.2
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
..+++.|++|+|||.+++.|+..+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3688999999999999999998864
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.87 E-value=0.44 Score=42.77 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=19.6
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+.+.||+|+|||++++.|+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5778999999999999999863
No 326
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.62 E-value=0.46 Score=43.24 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.||+|+|||++.+.|...+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 578999999999999999988753
No 327
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=85.60 E-value=0.43 Score=42.95 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.2
Q ss_pred eeeeccCCCChhHHHHHHHHHh
Q psy1308 300 FLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~l 321 (607)
+.+.||+|+||++|++.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999987654
No 328
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.59 E-value=0.73 Score=41.28 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=21.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||++++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999874
No 329
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.51 E-value=3.7 Score=41.04 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.4
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
++-.+++.||+|+|||++++.|+..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3458999999999999999999988754
No 330
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.32 E-value=7.8 Score=41.07 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=26.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccC---cCCceEEeecc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRD---KKEAFIRLDMS 335 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~---~~~~~~~l~~a 335 (607)
++++.|.+|+|||.+.+.+...+... +.-.++-+|..
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 79999999999999999877654322 12346666654
No 331
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.85 E-value=0.66 Score=42.54 Aligned_cols=37 Identities=35% Similarity=0.468 Sum_probs=27.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
+..+++.|++|+|||.+++.|++.+......+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4478899999999999999999987521122355555
No 332
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=84.71 E-value=0.56 Score=45.60 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=27.8
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ 338 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~ 338 (607)
++..+.+.|++|+|||++++.+++.+... ......+++..+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEeecchhh
Confidence 35578999999999999999999876432 2225566766654
No 333
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.70 E-value=0.61 Score=46.21 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.4
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
..+.+.||+|+|||.+++.|++.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3688999999999999999998874
No 334
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=84.46 E-value=3.4 Score=42.41 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=48.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCC--CCchhhHHH-hhC-----C
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHD--DGGQLTKRL-KKC-----P 370 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~--~~~~l~~~~-~~~-----~ 370 (607)
..++.|++|+|||.+.+.++.. .....+-.... ...++.+-+... |..... .-.-+-..+ ... +
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~------~~~lVlTpT~~-aa~~l~~kl~~~-~~~~~~~~~V~T~dsfL~~~~~~~~~~ 234 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF------EEDLILVPGRQ-AAEMIRRRANAS-GIIVATKDNVRTVDSFLMNYGKGARCQ 234 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT------TTCEEEESCHH-HHHHHHHHHTTT-SCCCCCTTTEEEHHHHHHTTTSSCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhcc------CCeEEEeCCHH-HHHHHHHHhhhc-CccccccceEEEeHHhhcCCCCCCCCc
Confidence 6789999999999999876532 11222222111 112222222211 100000 001111222 222 2
Q ss_pred CeEEEEecCCccCHHHHHHHHHhhc
Q psy1308 371 NAVVLFDEVDKAHPDVLTVLLQLFD 395 (607)
Q Consensus 371 ~~vl~lDEiek~~~~~~~~Ll~~~~ 395 (607)
..+|++||+-.+++.....|+....
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~ 259 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL 259 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC
Confidence 5799999999999999998887765
No 335
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=84.33 E-value=0.76 Score=40.98 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.6
Q ss_pred eeeeccCCCChhHHHHHHHHH
Q psy1308 300 FLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 300 ~ll~G~~G~GKt~la~~la~~ 320 (607)
++++|++|+|||.+|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 578999999999999998854
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.05 E-value=0.62 Score=42.84 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.|++|+|||++++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999876
No 337
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=83.93 E-value=0.68 Score=40.41 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||.|+|||.+.|.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68899999999999999999987
No 338
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=83.90 E-value=4.5 Score=46.25 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHH
Q psy1308 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 270 i~Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
.+|.+..++.+...+.... ...++.++|+.|+|||.||+.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-------~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-------PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-------SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-------CCeEEEEEcCCCccHHHHHHHHHH
Confidence 3788888888887776421 123788999999999999998875
No 339
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.84 E-value=0.66 Score=43.01 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.++|.|++|+|||++++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999876
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.80 E-value=0.62 Score=42.53 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+.+.|++|+|||++++.|++.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4478899999999999999998754
No 341
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.76 E-value=0.7 Score=44.67 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.6
Q ss_pred CCCCceeeeeccCCCChhHHHHHHHH
Q psy1308 294 DDHPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 294 ~~~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
+.+|..+.+.|++|+|||++++.|++
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999999995
No 342
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.75 E-value=0.71 Score=42.52 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCceeeeeccCCCChhHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
+|..+.+.|++|+|||++++.|++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999987
No 343
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.71 E-value=0.87 Score=46.12 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=22.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+.+.||+|+|||.++..|++.+..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCC
Confidence 6789999999999999999998753
No 344
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=83.60 E-value=1.3 Score=43.29 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.++..+.+.|++|+|||++++.|+..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456889999999999999999998875
No 345
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.60 E-value=1.7 Score=42.26 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
++-.+++.|++|+|||+++..|+..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3458899999999999999999988753
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.53 E-value=0.66 Score=41.77 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+.+.|++|+|||++++.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999998743
No 347
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=83.45 E-value=0.66 Score=42.43 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999876
No 348
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=83.33 E-value=0.83 Score=44.87 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.++..+.+.||+|+|||++++.|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34558899999999999999999998754
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=83.14 E-value=1.1 Score=43.71 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=24.3
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
++-.+.+.||+|+|||++++.|+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3458899999999999999999988754
No 350
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.83 E-value=0.65 Score=42.94 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.++||+|+|||++.+.|+...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999866
No 351
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.81 E-value=0.91 Score=42.45 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCCCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 293 DDDHPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 293 ~~~~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
++.++..+.+.|++|+|||.+++.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34455688999999999999999999866
No 352
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.75 E-value=0.71 Score=44.96 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.2
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
|..+++.|++|+|||++++.|++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999999999974
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.67 E-value=0.84 Score=43.24 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=21.7
Q ss_pred ceeeeeccCCCChhHHHHHHHHHh
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l 321 (607)
..+.+.||+|+|||++++.|++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 378899999999999999999776
No 354
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.62 E-value=0.88 Score=42.84 Aligned_cols=25 Identities=16% Similarity=0.406 Sum_probs=22.3
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+.+.||+|+|||++++.|+..+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999999875
No 355
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=82.54 E-value=0.74 Score=42.62 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.||+|+|||+|.+.|.....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 788999999999999999998764
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.37 E-value=0.61 Score=42.22 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.||+|+|||.++..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998764
No 357
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.34 E-value=2.5 Score=42.24 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=46.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCC--Ccc-CCCCchhhH----HHhhCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG--YLG-HDDGGQLTK----RLKKCPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g--~~g-~~~~~~l~~----~~~~~~~ 371 (607)
.+++.|++|+|||.++..++...... ..+...++...-.. ....+-+|.... ++. ......+.. +++....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~-~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~ 142 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALD-PIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 142 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCC-HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCcc-HHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCC
Confidence 68899999999999999988776443 33445555432211 112222332211 000 001112222 2334567
Q ss_pred eEEEEecCCccCH
Q psy1308 372 AVVLFDEVDKAHP 384 (607)
Q Consensus 372 ~vl~lDEiek~~~ 384 (607)
.+|++|.+..+.+
T Consensus 143 ~lVVIDsl~~l~~ 155 (356)
T 1u94_A 143 DVIVVDSVAALTP 155 (356)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcCHHHhcc
Confidence 8999999988763
No 358
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.15 E-value=2 Score=42.01 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=24.7
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
.|-.++++|++|+|||+++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34589999999999999999999887543
No 359
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=82.13 E-value=1.1 Score=41.83 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.4
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
++..+.|.|++|+|||++++.|++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4557889999999999999999998853
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=82.03 E-value=0.78 Score=41.75 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred ceeeeeccCCCChhHHHHHHHH
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~ 319 (607)
..+.+.|++|+|||++++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999986
No 361
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.86 E-value=1.8 Score=43.53 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=44.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCC--C-ccCCCCchhhH----HHhhCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG--Y-LGHDDGGQLTK----RLKKCPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g--~-~g~~~~~~l~~----~~~~~~~ 371 (607)
.+++.|++|+|||.++..++...... ..+..-++...-.. ....+-+|.... + ........+.. +++....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~-~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALD-PVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI 153 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCC-HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChh-HHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence 67789999999999999888765433 23344444432111 112233332211 0 00011112222 2333557
Q ss_pred eEEEEecCCccC
Q psy1308 372 AVVLFDEVDKAH 383 (607)
Q Consensus 372 ~vl~lDEiek~~ 383 (607)
.+|++|.+..+.
T Consensus 154 ~lVVIDsl~~l~ 165 (366)
T 1xp8_A 154 DVVVVDSVAALT 165 (366)
T ss_dssp SEEEEECTTTCC
T ss_pred CEEEEeChHHhc
Confidence 899999998775
No 362
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.83 E-value=0.72 Score=47.43 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
..|..++++|++|+|||++++.+++.+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345688999999999999999998654
No 363
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.82 E-value=0.77 Score=41.70 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.6
Q ss_pred eeeeeccCCCChhHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~ 319 (607)
.+.+.|++|+|||++++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999999999998
No 364
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=81.78 E-value=0.9 Score=41.24 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||++++.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 678999999999999999998763
No 365
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=81.61 E-value=3.5 Score=40.53 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=30.0
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
.+-.++++|++|+|||.++..|+..+... .....-+++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 34588999999999999999999887654 333444455443
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.32 E-value=1.1 Score=39.52 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.2
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
..+.+.|++|+|||.++..++..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 368899999999999999999887543
No 367
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.28 E-value=2.2 Score=52.11 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=49.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCC-CccC-----CCCchhhH-HHhhCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG-YLGH-----DDGGQLTK-RLKKCPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g-~~g~-----~~~~~l~~-~~~~~~~ 371 (607)
.++++|++|+|||.++..++...... .....-+++....+... .+-+|-... +.-+ +....+.. +.+....
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k~-Ge~~~Fit~ee~~~~L~-a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~~ 1160 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1160 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEccccHHHHH-HHHcCCChhHheeecCcchHHHHHHHHHHHHhCCC
Confidence 78999999999999999988776544 44455555555443333 233332110 1000 00111222 3334557
Q ss_pred eEEEEecCCccCH
Q psy1308 372 AVVLFDEVDKAHP 384 (607)
Q Consensus 372 ~vl~lDEiek~~~ 384 (607)
.+|++|++.-+.|
T Consensus 1161 dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1161 DVIVVDSVAALTP 1173 (2050)
T ss_dssp SEEEESCGGGCCC
T ss_pred CEEEECCcccccc
Confidence 8999999998854
No 368
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.03 E-value=0.92 Score=41.69 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
|..+.+.|++|+|||++++.+++.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5578899999999999999999865
No 369
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=80.99 E-value=1.4 Score=47.48 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
++..++|.|.+|+|||++++.|++.+... ..+++.+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~-G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEec
Confidence 46689999999999999999999988543 33455554
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=80.73 E-value=0.53 Score=43.12 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+.+.|++|+|||++++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999998753
No 371
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.36 E-value=1.2 Score=39.24 Aligned_cols=19 Identities=42% Similarity=0.749 Sum_probs=17.3
Q ss_pred eeeeeccCCCChhHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQL 317 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~l 317 (607)
.+.++||+|+|||++++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999963
No 372
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.36 E-value=0.95 Score=42.83 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||++++.|++.+.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999998763
No 373
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=79.41 E-value=0.89 Score=51.59 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.2
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+.++||+|+|||.+.|.++-.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999998544
No 374
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=79.40 E-value=1.5 Score=40.39 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+++.||+|+|||.+++.++..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999996654
No 375
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=79.04 E-value=1.2 Score=41.84 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.3
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
|..+.+.|+.|+|||++++.|++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56788999999999999999999873
No 376
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=78.89 E-value=1.1 Score=42.09 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.9
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+.+.||+|+|||.+++.++..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7889999999999999999843
No 377
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=78.85 E-value=1.3 Score=46.92 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=24.5
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.|..++++|.+|+|||++++.|++.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999998743
No 378
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=78.67 E-value=1 Score=41.52 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||.+++.++..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999998654
No 379
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=78.29 E-value=1.9 Score=46.08 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=29.8
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
++..++|.|.+|+|||++++.|++.+...+..+++.+|.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 456889999999999999999999886431134666663
No 380
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.08 E-value=0.8 Score=42.65 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=15.0
Q ss_pred eeeeeccCCCChhHHHHHHH-HHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLA-FYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la-~~l 321 (607)
.+.++||+|+|||++++.|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 68899999999999999999 764
No 381
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=77.72 E-value=1.4 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=21.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.++||+|+|||.|++.|+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68899999999999999999887
No 382
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.62 E-value=9.9 Score=36.74 Aligned_cols=40 Identities=28% Similarity=0.496 Sum_probs=29.2
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
+..+++.|++|+|||.++..++..+... .....-+++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 5578889999999999999999887543 333444555433
No 383
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=77.53 E-value=2.1 Score=45.01 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=24.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
+..++|.|.+|+|||++++.|++.+..
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999999874
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=77.46 E-value=4.2 Score=37.05 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.8
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
..+++.|.+|+|||.++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4788999999999999999987764
No 385
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.14 E-value=1.3 Score=40.67 Aligned_cols=22 Identities=41% Similarity=0.455 Sum_probs=20.3
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+.+.||+|+|||+|.+.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5778999999999999999977
No 386
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=76.96 E-value=1.6 Score=38.62 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+.+.|++|+|||.+.+.+...+..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccc
Confidence 6789999999999999999887643
No 387
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=76.81 E-value=1.1 Score=41.83 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||+|.+.|+..+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999998655
No 388
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=76.74 E-value=1.6 Score=39.40 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
...+.++|.+|+|||++++.+++.+. +..+|+..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg------~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYG------AHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHC------CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC------CEEEECcHH
Confidence 34788999999999999999998752 455665444
No 389
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.68 E-value=0.85 Score=40.35 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=25.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDM 334 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~ 334 (607)
.+.+.|++|+|||++++.|...+...+ ..+-+.++-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 577999999999999999999875431 134455543
No 390
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=76.67 E-value=1.8 Score=43.66 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=21.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.||+|+|||.+++.++...
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 78899999999999999999865
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=76.30 E-value=1.4 Score=41.32 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=25.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||++.+.++..+.. ..+-+.++
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~ 58 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLN 58 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEC
Confidence 5789999999999999999976532 33455554
No 392
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=76.13 E-value=2.5 Score=39.36 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=24.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~ 334 (607)
.+++.|++|+|||.++..++...... ..+...++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~ 59 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVAL 59 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 68899999999999998887665433 333444443
No 393
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=76.09 E-value=4.6 Score=35.18 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.2
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++..++++|++|+|||.+...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999888754
No 394
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=75.96 E-value=1.5 Score=40.13 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.8
Q ss_pred eeeeeccCCCChhHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~ 319 (607)
.+++.|++|+|||.+++.++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.85 E-value=1.8 Score=38.38 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
..+++|++|+|||.+.++|.-.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999999999999887754
No 396
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=75.38 E-value=1.2 Score=41.24 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||+|.+.|+..+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998654
No 397
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.20 E-value=1.7 Score=43.68 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=26.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+++.||+|+|||++.+.+...+.. ..+.+.++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie 209 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF--DQRLITIE 209 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC--CceEEEEC
Confidence 5889999999999999999987654 34566665
No 398
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=75.19 E-value=2.2 Score=39.49 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.6
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
++..+.|.|++|+|||.+++.+++.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999998854
No 399
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=74.56 E-value=3.2 Score=42.67 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=47.5
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccc--hhH---hhhcCC--CCC-ccCCCCchhhHHH
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH--EVA---KLIGAP--PGY-LGHDDGGQLTKRL 366 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~--~~~---~llg~~--~g~-~g~~~~~~l~~~~ 366 (607)
..|..++++|++|+|||+++..|+..+... .....-+++..+.... ... ...|.+ +.. .+.+....+...+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l 175 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGM 175 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHH
Confidence 345688999999999999999999877543 2223444443332110 011 111110 000 1111111222333
Q ss_pred hh-CCCeEEEEecCCccCH
Q psy1308 367 KK-CPNAVVLFDEVDKAHP 384 (607)
Q Consensus 367 ~~-~~~~vl~lDEiek~~~ 384 (607)
.. ..+.++++|.....+.
T Consensus 176 ~~~~~~D~vIIDT~G~~~~ 194 (432)
T 2v3c_C 176 EKFKKADVLIIDTAGRHKE 194 (432)
T ss_dssp HTTSSCSEEEEECCCSCSS
T ss_pred HHhhCCCEEEEcCCCCccc
Confidence 33 4467999999988774
No 400
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=74.56 E-value=1.4 Score=41.23 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||+|.+.|+..+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998765
No 401
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.30 E-value=1.5 Score=41.25 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=25.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~ 62 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQP--TAGEITID 62 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEET
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEEC
Confidence 6789999999999999999876533 33444443
No 402
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=74.29 E-value=2.3 Score=39.09 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
+..+.|.|++|+|||++++.|++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4578899999999999999999988654
No 403
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=74.20 E-value=1.4 Score=41.49 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=24.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~ 69 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLID 69 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEEC
Confidence 6789999999999999999876532 23444443
No 404
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.05 E-value=5.8 Score=46.34 Aligned_cols=40 Identities=35% Similarity=0.456 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCceeeeeccCCCChhHHHHHHHH
Q psy1308 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 272 Gq~~ai~~l~~~i~~~~~~~~~~~~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
.|..++..+...+... +|...+++|++|+|||.++-..+-
T Consensus 607 ~Q~~ai~~il~~~~~g--------~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQP--------LAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp HHHHHHHHHHHHHHSS--------SCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------CcCcEEEECCCCCCHHHHHHHHHH
Confidence 3666666655444322 256789999999999998764443
No 405
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=74.00 E-value=1.6 Score=41.70 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=25.1
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~ 71 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLL 71 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEET
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC
Confidence 6789999999999999999876533 34445554
No 406
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=73.87 E-value=1.5 Score=41.79 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=24.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~ 66 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVN 66 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEEC
Confidence 6789999999999999999866532 33445543
No 407
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=73.85 E-value=1.6 Score=40.68 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.||+|+|||+|.+.|+..+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 678999999999999999987653
No 408
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=73.84 E-value=1.8 Score=40.91 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.2
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+.+.||+|+|||+|.+.|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999975
No 409
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=73.77 E-value=2.2 Score=39.84 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=24.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
+..+.|.|++|+|||.+++.|++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4578899999999999999999988654
No 410
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=73.74 E-value=5.7 Score=38.79 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=44.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCc-CCceEEeecccccccchhHhhhcCCCC--Ccc-CCCCchh-hHH------Hh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDK-KEAFIRLDMSEYQEKHEVAKLIGAPPG--YLG-HDDGGQL-TKR------LK 367 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~-~~~~~~l~~a~~~~~~~~~~llg~~~g--~~g-~~~~~~l-~~~------~~ 367 (607)
..++.||+|+|||.|+-.++....... .....-+|...--. ..-.+-+|.... ++- ......+ ... ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~-~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT-PAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC-HHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh-HHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 579999999999999877766543321 22344455432221 112333443221 110 0111122 111 34
Q ss_pred hCCCeEEEEecCCccC
Q psy1308 368 KCPNAVVLFDEVDKAH 383 (607)
Q Consensus 368 ~~~~~vl~lDEiek~~ 383 (607)
.....+|++|-|.-+.
T Consensus 109 ~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCCEEEEEECSTTCB
T ss_pred ccCceEEEEecccccc
Confidence 4557899999988774
No 411
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=73.56 E-value=3.4 Score=36.62 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.2
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++..++++|++|+|||.+...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458899999999999999988753
No 412
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=73.49 E-value=1.9 Score=37.08 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++..+++.|++|+|||.+...+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999998754
No 413
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.44 E-value=3.2 Score=42.42 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
.+++.||+|+|||++.+.+...+...
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 68999999999999999999987653
No 414
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=73.36 E-value=1.9 Score=37.98 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.++|.|++|+|||+++..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5899999999999999998874
No 415
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=73.31 E-value=1.6 Score=41.97 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67899999999999999998765
No 416
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=73.24 E-value=3.6 Score=38.24 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++.++++|++|+|||.+...+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 458899999999999999988754
No 417
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.24 E-value=5.1 Score=48.30 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=47.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCC--C-ccCCCCchhhHHHh----hCCC
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG--Y-LGHDDGGQLTKRLK----KCPN 371 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g--~-~g~~~~~~l~~~~~----~~~~ 371 (607)
.+++.|++|+|||.++..++...... ......++...-... ..++-+|.... + ........+...++ ....
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~q-l~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~ 811 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDP-IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 811 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCH-HHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHHH-HHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCC
Confidence 78999999999999999998876543 223444443322211 12333332111 0 00011123333333 4567
Q ss_pred eEEEEecCCccCH
Q psy1308 372 AVVLFDEVDKAHP 384 (607)
Q Consensus 372 ~vl~lDEiek~~~ 384 (607)
.+|++|++.-+.+
T Consensus 812 ~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 812 DVIVVDSVAALTP 824 (1706)
T ss_dssp SEEEESCSTTCCC
T ss_pred CEEEEechhhhcc
Confidence 8999999998763
No 418
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=73.21 E-value=1.6 Score=41.90 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=24.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~ 79 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLD 79 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEEC
Confidence 6789999999999999999876532 23444443
No 419
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.18 E-value=3 Score=40.27 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.4
Q ss_pred eeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
.+.+.|++|+|||.+++.++..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988754
No 420
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=72.90 E-value=2.1 Score=40.97 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.||+|+|||++.+.|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998753
No 421
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=72.73 E-value=2 Score=41.11 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.2
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+.+.||+|+|||+|.+.|+..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999865
No 422
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=72.73 E-value=2.3 Score=39.49 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=20.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
...+.|.|++|+|||++++.|++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999998743
No 423
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=72.71 E-value=1.7 Score=41.33 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=24.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~ 67 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFE 67 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEC
Confidence 6789999999999999999866532 23444443
No 424
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=72.70 E-value=3.1 Score=36.24 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHH
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
.++..+++.|++|+|||.+...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557899999999999999988753
No 425
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.70 E-value=1.7 Score=40.81 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=24.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~ 66 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFN 66 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEC
Confidence 6789999999999999999876532 33445443
No 426
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=72.56 E-value=1.6 Score=40.21 Aligned_cols=33 Identities=36% Similarity=0.544 Sum_probs=24.2
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||++.+.|+..+.. ..+-+.++
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~ 69 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYN 69 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEEC
Confidence 5778999999999999999866532 33444443
No 427
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=72.49 E-value=2.4 Score=37.47 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=20.8
Q ss_pred CCceeeeeccCCCChhHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
++..+.+.|++|+|||.|.+.+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999999874
No 428
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=72.42 E-value=1 Score=42.88 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.0
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHh
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
++..+.+.|+.|+|||++++.|++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999999876
No 429
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.41 E-value=2.6 Score=38.43 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..++++|++|+|||.+...+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999988653
No 430
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.35 E-value=1.7 Score=41.40 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=24.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~ 84 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIID 84 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEEC
Confidence 6789999999999999999866532 33444443
No 431
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.22 E-value=5.6 Score=41.70 Aligned_cols=30 Identities=37% Similarity=0.678 Sum_probs=24.2
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
.+|..++++|++|+|||+++..|+..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 445689999999999999999999887543
No 432
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=72.21 E-value=1.9 Score=43.08 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 67899999999999999999765
No 433
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=72.12 E-value=3.5 Score=43.39 Aligned_cols=33 Identities=15% Similarity=0.386 Sum_probs=26.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+++.||+|+|||++.+.+...+.. ..+.+.++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~--~~giitie 294 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIE 294 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEc
Confidence 4889999999999999999887743 34555553
No 434
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=71.96 E-value=2.5 Score=44.93 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.5
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
..+.++|++|+|||++++.|+..+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcc
Confidence 47889999999999999999998864
No 435
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=71.70 E-value=1.8 Score=41.03 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=24.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~ 75 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVF 75 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CceEEEEC
Confidence 6789999999999999999866532 33444443
No 436
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=71.56 E-value=1.8 Score=40.80 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=24.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. . +-+.++
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~ 59 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFA 59 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEET
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEEC
Confidence 6789999999999999999866532 2 455554
No 437
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=71.42 E-value=14 Score=39.85 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=51.6
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccccccchhHhhhcCCCCCccCCCCchhhHHHhhCCCeEEEEec
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDE 378 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~~~~~~~~llg~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 378 (607)
.+.++|..|.|||.++-.++..+... ..+.......-..+.++.+..-.|... ..+. .......+|++||
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~~-----~~vtAP~~~a~~~l~~~~~~~i~~~~P---d~~~--~~~~~~dlliVDE 263 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAGR-----AIVTAPAKASTDVLAQFAGEKFRFIAP---DALL--ASDEQADWLVVDE 263 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSC-----EEEECSSCCSCHHHHHHHGGGCCBCCH---HHHH--HSCCCCSEEEEET
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhC-----cEEECCCHHHHHHHHHHhhCCeEEeCc---hhhh--hCcccCCEEEEEc
Confidence 56899999999999998888776432 222222322222333444332223321 1111 1122367999999
Q ss_pred CCccCHHHHHHHHHh
Q psy1308 379 VDKAHPDVLTVLLQL 393 (607)
Q Consensus 379 iek~~~~~~~~Ll~~ 393 (607)
+-.+|..++..|+..
T Consensus 264 AAaIp~pll~~ll~~ 278 (671)
T 2zpa_A 264 AAAIPAPLLHQLVSR 278 (671)
T ss_dssp GGGSCHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHhh
Confidence 999999998888864
No 438
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=71.42 E-value=7.3 Score=39.96 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=31.5
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeeccccc
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQ 338 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~~ 338 (607)
..|..++++|++|+|||+++-.|+..+..........+|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 34568888999999999999999988765312334555665443
No 439
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=71.37 E-value=2.6 Score=38.25 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.9
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
..+.+.|+.|+|||++++.||+.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 36889999999999999999998743
No 440
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=71.27 E-value=1.9 Score=41.04 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||+|.+.|+..+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999998765
No 441
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=71.24 E-value=2.2 Score=42.62 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67889999999999999999765
No 442
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=70.93 E-value=1.9 Score=41.47 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=24.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+.. ..+-+.++
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~ 81 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLF 81 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEEC
Confidence 6789999999999999999866532 33444443
No 443
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=70.81 E-value=4.5 Score=36.99 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=22.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
+..+.+.|.+|+|||.++..++...+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 346888899999999999999887654
No 444
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=70.48 E-value=2.3 Score=42.84 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.9
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.|.|+-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 67899999999999999999765
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=70.43 E-value=2 Score=40.99 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||+|.+.|+..+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999998765
No 446
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=70.41 E-value=2.7 Score=36.60 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.1
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++..+++.|++|+|||.|...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999988743
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=70.31 E-value=2.6 Score=40.45 Aligned_cols=23 Identities=43% Similarity=0.443 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+++.|++|+|||.+++.++..+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78899999999999999998754
No 448
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=70.29 E-value=2.3 Score=42.53 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 67899999999999999999765
No 449
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=70.23 E-value=2 Score=40.59 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.0
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.||+|+|||+|.+.|+..+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999987653
No 450
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=70.21 E-value=2.3 Score=42.45 Aligned_cols=23 Identities=39% Similarity=0.379 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 67899999999999999999765
No 451
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.20 E-value=7.9 Score=39.55 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.4
Q ss_pred CCceeeeeccCCCChhHHHHHHHHHhccCcCCceEEeecccc
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~~a~~ 337 (607)
.|..+++.|++|+|||+++..++..+... ......+++..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeecccc
Confidence 45578888999999999999999988654 334445555443
No 452
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=70.11 E-value=3.3 Score=38.10 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=23.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
...+.|.|++|+|||..++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457889999999999999999998854
No 453
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.02 E-value=2.8 Score=36.72 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.5
Q ss_pred CCCceeeeeccCCCChhHHHHHHH
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLA 318 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la 318 (607)
.++..+++.|++|+|||.+...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 446789999999999999998765
No 454
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=69.85 E-value=2.6 Score=36.60 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=19.8
Q ss_pred CceeeeeccCCCChhHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~ 319 (607)
+..+++.|++|+|||.|...+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45789999999999999988763
No 455
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=69.78 E-value=2.3 Score=42.71 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.+.|++|+|||+|++.|+..+.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999998764
No 456
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=69.72 E-value=2.4 Score=42.58 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+-..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999999764
No 457
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=69.71 E-value=2.8 Score=36.99 Aligned_cols=25 Identities=48% Similarity=0.604 Sum_probs=21.0
Q ss_pred CCCceeeeeccCCCChhHHHHHHHH
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
.++..+++.|++|+|||.|...+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4456899999999999999988763
No 458
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=69.49 E-value=7.4 Score=40.31 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=19.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
..++.+|+|+|||..+-.++...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 37889999999999987777655
No 459
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=69.44 E-value=3.7 Score=38.19 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.4
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+++.|+||+|||.++..++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7889999999999999887654
No 460
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=69.43 E-value=2.7 Score=35.97 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.3
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.+...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999888754
No 461
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=69.35 E-value=2.5 Score=37.75 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.6
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
..+.+.|++|+|||.|.+.+.....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999987543
No 462
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=69.34 E-value=3.5 Score=36.70 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++..++++|++|+|||.|...+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999988764
No 463
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=69.25 E-value=2.3 Score=37.00 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.+...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 447899999999999999988753
No 464
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=69.23 E-value=2.7 Score=36.69 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.7
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.+...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 458899999999999999888754
No 465
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=69.20 E-value=2.5 Score=42.48 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||+|.+.|+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 67899999999999999999765
No 466
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=69.14 E-value=3.7 Score=35.16 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.3
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhcc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHR 323 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~ 323 (607)
-..+++||+|+|||.+..+|.-.++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36789999999999999999877654
No 467
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=69.07 E-value=2.7 Score=37.72 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.9
Q ss_pred ceeeeeccCCCChhHHHHHHHHHh
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l 321 (607)
..+.+.|++|+|||.|.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 468
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=69.01 E-value=2.2 Score=40.56 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=24.5
Q ss_pred eeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
.+.+.||+|+|||+|.+.|+..+ . ..+-+.++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~ 63 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-P--YSGNIFIN 63 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEEC
Confidence 57899999999999999998766 3 33444443
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=68.95 E-value=3.2 Score=38.47 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.1
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
+.+-+.|++|+||+++++.|++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999998763
No 470
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=68.81 E-value=3.1 Score=36.24 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.4
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++..+++.|++|+|||.|...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999988765
No 471
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=68.55 E-value=1.4 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.7
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+.++||+|+|||.+.|.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 6789999999999999998754
No 472
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=68.50 E-value=2.5 Score=36.43 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.7
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.+...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999888754
No 473
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=68.48 E-value=1.6 Score=42.56 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred eeeeeccCCCChhHHHHHHHHHhc
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
.+.++||+|+|||.|.+.|+..+.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCchHHHHHHHHHcCCC
Confidence 688999999999999999987653
No 474
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=68.27 E-value=2.7 Score=37.06 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.3
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+...++++|++|+|||.|...+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 475
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=68.18 E-value=2.8 Score=36.26 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.4
Q ss_pred ceeeeeccCCCChhHHHHHHHH
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~ 319 (607)
..+.+.|++|+|||.|...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3678999999999999999874
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=68.02 E-value=3.6 Score=36.53 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.5
Q ss_pred CCceeeeeccCCCChhHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~ 319 (607)
++..+++.|++|+|||.+...+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999998864
No 477
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=67.87 E-value=2.8 Score=36.98 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=21.2
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++..++++|++|+|||.|...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3458899999999999999988753
No 478
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=67.75 E-value=2.4 Score=36.94 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=20.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.|...+...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999988753
No 479
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=67.70 E-value=2.9 Score=35.99 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.4
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++.+++.|++|+|||.+...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999988743
No 480
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=67.59 E-value=3.7 Score=35.32 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.1
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
++..+++.|++|+|||.+...+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999988643
No 481
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=67.56 E-value=5.5 Score=40.59 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
+..+.+.|++|+|||++.+.|....
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478899999999999999998743
No 482
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=67.29 E-value=3.8 Score=36.44 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=21.4
Q ss_pred CCceeeeeccCCCChhHHHHHHHHH
Q psy1308 296 HPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 296 ~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
....+++.|++|+|||.|...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4568999999999999999988753
No 483
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=67.29 E-value=3.2 Score=36.22 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=21.5
Q ss_pred CCCceeeeeccCCCChhHHHHHHHHH
Q psy1308 295 DHPLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 295 ~~p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
.++..+++.|++|+|||.|...+...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 33458899999999999999988754
No 484
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=67.24 E-value=3 Score=37.05 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.9
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..++++|++|+|||.|...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988764
No 485
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=67.19 E-value=3.2 Score=35.57 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.+...+...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999988754
No 486
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=67.14 E-value=2.2 Score=39.56 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=21.0
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+.+.|+.|+|||++++.|+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 447899999999999999998765
No 487
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=67.13 E-value=3 Score=35.54 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.0
Q ss_pred ceeeeeccCCCChhHHHHHHHHH
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~ 320 (607)
..+++.|++|+|||.+...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988754
No 488
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=67.01 E-value=3.9 Score=37.48 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.7
Q ss_pred ceeeeeccCCCChhHHHHHHHHHhccC
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAFYIHRD 324 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~~l~~~ 324 (607)
..+.|.|++|+|||+.++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 489
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=66.98 E-value=2.1 Score=42.57 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+-..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 67899999999999999999765
No 490
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=66.87 E-value=3.3 Score=35.44 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.+...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999988754
No 491
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=66.85 E-value=2.8 Score=36.86 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.8
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.|...+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 492
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=66.78 E-value=2.6 Score=36.25 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.1
Q ss_pred CceeeeeccCCCChhHHHHHHHHHh
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+++.|++|+|||.+...+...-
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3578999999999999999887543
No 493
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=66.65 E-value=3.1 Score=35.81 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.9
Q ss_pred CceeeeeccCCCChhHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~ 319 (607)
...+++.|++|+|||.+...+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34688999999999999998874
No 494
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=66.59 E-value=3.4 Score=35.20 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.1
Q ss_pred eeeeeccCCCChhHHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~ 320 (607)
.+++.|++|+|||.+...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 495
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=66.56 E-value=4.2 Score=37.58 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.1
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhc
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIH 322 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~ 322 (607)
...+.+.|++|+|||.+++.|++.+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999874
No 496
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=65.99 E-value=5.1 Score=42.54 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=27.6
Q ss_pred CceeeeeccCCCChhHHHHHHHHHhccCcCCceEEee
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~l~~~~~~~~~~l~ 333 (607)
+..+.+.|.+|+|||++++.|++.+... ...+..+|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~-G~~~~~ld 407 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQAR-GRKVTLLD 407 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhc-CCeEEEEC
Confidence 4578899999999999999999987543 23344444
No 497
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=65.93 E-value=3 Score=42.16 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred eeeeeccCCCChhHHHHHHHHHh
Q psy1308 299 VFLFLGSSGIGKTELAKQLAFYI 321 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~~l 321 (607)
.+.+.||+|+|||++.+.|+...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 67899999999999999999764
No 498
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=65.79 E-value=2.4 Score=36.45 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.5
Q ss_pred CceeeeeccCCCChhHHHHHHHHH
Q psy1308 297 PLVFLFLGSSGIGKTELAKQLAFY 320 (607)
Q Consensus 297 p~~~ll~G~~G~GKt~la~~la~~ 320 (607)
+..+++.|++|+|||.+...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999888753
No 499
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=65.69 E-value=3.4 Score=36.47 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.1
Q ss_pred ceeeeeccCCCChhHHHHHHHH
Q psy1308 298 LVFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 298 ~~~ll~G~~G~GKt~la~~la~ 319 (607)
..+++.|++|+|||.|.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999998874
No 500
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=65.68 E-value=4.7 Score=46.29 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.7
Q ss_pred eeeeeccCCCChhHHHHHHHH
Q psy1308 299 VFLFLGSSGIGKTELAKQLAF 319 (607)
Q Consensus 299 ~~ll~G~~G~GKt~la~~la~ 319 (607)
.++++||+|+|||.+.|.++-
T Consensus 791 i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 678999999999999999943
Done!