RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1308
(607 letters)
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 277 bits (712), Expect = 3e-89
Identities = 124/324 (38%), Positives = 200/324 (61%), Gaps = 31/324 (9%)
Query: 256 ERRKY-PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTEL 313
ER K LE+ L R+VGQ+ AI ++ AI+R G D + P+ FLFLG +G+GKTEL
Sbjct: 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTEL 63
Query: 314 AKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAV 373
AK LA + D +EA IR+DM+EY EKH V++LIGAPPGY+G+++GGQLT+ +++ P +V
Sbjct: 64 AKTLAATLF-DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSV 122
Query: 374 VLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLR 433
+LFD ++KAHPDV +LLQ+ D+GRLTD G+T++ ++ + +MTSNL S I L+
Sbjct: 123 ILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLI----LEGL 178
Query: 434 KEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493
++G + + +D V + +L++HF R EFL R++EIV F P
Sbjct: 179 QKGWPYERI--------------------RDEVFK-VLQQHF-RPEFLNRLDEIVVFRPL 216
Query: 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQV 552
+K ++ +V ++++ + L + I++ + LA+ GYD +GAR ++ ++R++
Sbjct: 217 TKEQIRQIVEIQMSYLRAR-LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 275
Query: 553 VSQLAAAHEKSVIGKGSFVRLYVQ 576
+ LA + +G V++ V
Sbjct: 276 ETPLAQKILAGEVKEGDRVQVDVG 299
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 283 bits (727), Expect = 3e-86
Identities = 97/312 (31%), Positives = 155/312 (49%), Gaps = 34/312 (10%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
+ +++ L RLK + GQ+ AI ++ AIK G + P+ FLF G +
Sbjct: 438 EKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPT 497
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTE+ QL+ + +R DMSEY E+H V++LIGAPPGY+G D GG LT +
Sbjct: 498 GVGKTEVTVQLSKALG----IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV 553
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
K P+AV+L DE++KAHPDV +LLQ+ D G LTD G+ + ++ + VMT+N E
Sbjct: 554 IKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 613
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ ++ L + +K+ F EF R++
Sbjct: 614 RKSIGLIHQDNS--------------------------TDAMEEIKKIF-TPEFRNRLDN 646
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIK 545
I++F S +H +V + + + LD+ +++ + LA+ GYD GAR +
Sbjct: 647 IIWFDHLSTDVIHQVVDKFIVELQVQ-LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMA 705
Query: 546 HEVERQVVSQLA 557
++ + LA
Sbjct: 706 RVIQDNLKKPLA 717
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 276 bits (708), Expect = 8e-83
Identities = 122/305 (40%), Positives = 194/305 (63%), Gaps = 31/305 (10%)
Query: 256 ERRKY-PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTEL 313
ER K LE+ L R+VGQ+ AI ++ AI+R G D + P+ FLFLG +G+GKTEL
Sbjct: 545 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTEL 604
Query: 314 AKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAV 373
AK LA + D +EA IR+DM+EY EKH V++LIGAPPGY+G+++GGQLT+ +++ P +V
Sbjct: 605 AKTLAATLF-DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSV 663
Query: 374 VLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLR 433
+LFDE++KAHPDV +LLQ+ D+GRLTD G+T++ ++ + ++TSNL S I L+
Sbjct: 664 ILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLI----LEGL 719
Query: 434 KEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPF 493
++G + + +D V + +L++HF R EFL R++EIV F P
Sbjct: 720 QKGWPYERI--------------------RDEVFK-VLQQHF-RPEFLNRLDEIVVFRPL 757
Query: 494 SKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIKHEVERQV 552
+K ++ +V +L++ + L + I++ + LA+ GYD +GAR ++ ++R++
Sbjct: 758 TKEQIRQIVEIQLSYLRAR-LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 816
Query: 553 VSQLA 557
+ LA
Sbjct: 817 ETPLA 821
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 240 bits (614), Expect = 3e-70
Identities = 105/353 (29%), Positives = 174/353 (49%), Gaps = 69/353 (19%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
+ + + E + +E L R++GQ+ A+ ++ A++R G D P+ F+FLG +
Sbjct: 471 VSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPT 530
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELA+ LA I +E+ IR+DMSEY EKH + GGQLT+++
Sbjct: 531 GVGKTELARALAESIF-GDEESMIRIDMSEYMEKHSTS--------------GGQLTEKV 575
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +VVL D ++KAHPDV +LLQ+ ++GRLTD KG+T++ ++ I +MTSN+ ++E
Sbjct: 576 RRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKD 635
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ V LKR F R EF+ RI+E
Sbjct: 636 K---------------------------------------VMGELKRAF-RPEFINRIDE 655
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILAD-GYDVHYGARSIK 545
I+ F K L +V + K+ L + +++I + +A+ G D+ YGAR ++
Sbjct: 656 IIVFHSLEKKHLTEIVSLMSDQLTKR-LKEQDLSIELTDAAKAKVAEEGVDLEYGARPLR 714
Query: 546 HEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVSEDSAKGGIIKLKVKKK 598
+++ V +L+ + I KG + L + G +K K
Sbjct: 715 RAIQKHVEDRLSEELLRGNIHKGQHIVL-----------DVEDGEFVVKTTAK 756
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 92.5 bits (231), Expect = 2e-22
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 38/158 (24%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A+ G ++ ++N D N++ GWTPLH A +G + V +LL+ A N
Sbjct: 14 LHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
S LH G+ ++V+LLL
Sbjct: 73 G---------------------------YQ---------NDSPLHDAAKNGHVDIVKLLL 96
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247
GA + G P DY +D ++K +L EK
Sbjct: 97 SYGASRNAVNIFGLRPVDYTDDESMKSLL-LLPEKNES 133
Score = 73.6 bits (182), Expect = 7e-16
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G T LH+A+I G + +V LL+ G++PN+ D +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKD---------------------------HA 42
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G++ LH G+ +VVELLL+ A P
Sbjct: 43 ---------GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79
Score = 66.7 bits (164), Expect = 2e-13
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 37/125 (29%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A +G K ++ +++ K VN +PLH AA NG VD V++LL GA+ N
Sbjct: 47 LHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV 105
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ G + Y ++ L
Sbjct: 106 N---------------------------IF---------GLRPVDYTDDESMKSLLLLPE 129
Query: 210 KSGAD 214
K+ +
Sbjct: 130 KNESS 134
Score = 48.6 bits (117), Expect = 3e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 182 NPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+P G + LH + G+ VE LL++G+DP VKD++G P
Sbjct: 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP 46
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 90.5 bits (226), Expect = 6e-22
Identities = 38/150 (25%), Positives = 54/150 (36%), Gaps = 37/150 (24%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
A + G E+K ++ DVN G PLH AA G+++ + LL GA+ N
Sbjct: 11 FMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + L V G+ V+LLL
Sbjct: 70 D---------------------------KH---------HITPLLSAVYEGHVSCVKLLL 93
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
GAD TVK G + ++ IK +LQ
Sbjct: 94 SKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 71.3 bits (176), Expect = 3e-15
Identities = 21/106 (19%), Positives = 27/106 (25%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
A NG +D V+ + G + N
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTL---------------------------EG 39
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G LHY G E++E LL GAD D P
Sbjct: 40 ---------GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 89.5 bits (223), Expect = 2e-20
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 6/134 (4%)
Query: 93 AARYGSAKELKTFIE---NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
A + I +N ++ L TPLH+A I + + LL AG +P L
Sbjct: 15 AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74
Query: 150 DLF-NTV-HRTAAEKKMNPFEVLLKREDEFNDVLNPNM-TFLGFSALHYGVVAGNTEVVE 206
D NT H + + VL + + + G + LH + G +VE
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 207 LLLKSGADPTVKDN 220
LL+ GAD ++
Sbjct: 135 LLVSLGADVNAQEP 148
Score = 81.1 bits (201), Expect = 2e-17
Identities = 33/153 (21%), Positives = 51/153 (33%), Gaps = 40/153 (26%)
Query: 90 LFRAARYGSAKELKTFIEN-----SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA 144
L A G + ++ + + G T LH+A+I+G + V +L+ GA
Sbjct: 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141
Query: 145 NPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEV 204
+ N + N G +ALH V N ++
Sbjct: 142 DVNAQEPCN-----------------------------------GRTALHLAVDLQNPDL 166
Query: 205 VELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237
V LLLK GAD G+ P +I
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI 199
Score = 66.4 bits (163), Expect = 1e-12
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 40/145 (27%)
Query: 120 GWTPLHVAAINGKVDN----VRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKRED 175
G + LH+A I+ + +R + A N +
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN------------------------- 42
Query: 176 EFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIK 235
N + LH V+ E+ E LL +G DP ++D G+ P A +
Sbjct: 43 --NL---------QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL 91
Query: 236 QILQKYAEKYADLQREKEAEERRKY 260
+ + +
Sbjct: 92 ASVGVLTQSCTTPHLHSILKATNYN 116
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 89.9 bits (224), Expect = 5e-20
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 37/151 (24%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
A G +E+ +E D+N + G T LH A I+ VD V+ L+E GAN N
Sbjct: 43 VFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
D N+ G+ LH G ++ E L
Sbjct: 102 PD---------------------------NE---------GWIPLHAAASCGYLDIAEYL 125
Query: 209 LKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
+ GA ++ G P D AE+ ++++LQ
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Score = 81.0 bits (201), Expect = 6e-17
Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 37/149 (24%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
R ++ + ++ + ++ G T LHVAA G + +++L++A + N+
Sbjct: 170 RKEEERIML-RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D D G++ LH G E +L+
Sbjct: 229 D---------------------------YD---------GWTPLHAAAHWGKEEACRILV 252
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQIL 238
++ D + G D A++ + +
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILGYLE 281
Score = 75.6 bits (187), Expect = 3e-15
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 14/138 (10%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L +A + +K +EN ++N GW PLH AA G +D L+ GA+
Sbjct: 77 LHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Query: 150 DLF-NTVHRTAAEKKMNPF-EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
+ +T A E+ M + + R+ D +A + +
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQG--VD---------IEAARKEEERIMLRDARQW 184
Query: 208 LLKSGADPTVKDNSGHIP 225
L + SG
Sbjct: 185 LNSGHINDVRHAKSGGTA 202
Score = 71.4 bits (176), Expect = 8e-14
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 38/133 (28%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF 152
GS +L+ + K ++ G L A +G + V LLE GA+ N +
Sbjct: 15 KRWIGSETDLEPPVVKRK-KTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYAN-- 70
Query: 153 NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212
D G +ALH + N ++V+ L+++G
Sbjct: 71 -------------------------VD---------GLTALHQACIDDNVDMVKFLVENG 96
Query: 213 ADPTVKDNSGHIP 225
A+ DN G IP
Sbjct: 97 ANINQPDNEGWIP 109
Score = 63.7 bits (156), Expect = 3e-11
Identities = 29/131 (22%), Positives = 42/131 (32%), Gaps = 37/131 (28%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA G + LK I+ + DVN++ GWTPLH AA GK + R+L+E +
Sbjct: 203 LHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ G +A + EL
Sbjct: 262 N---------------------------KV---------GQTAFDVADEDILGYLEELQK 285
Query: 210 KSGADPTVKDN 220
K + K
Sbjct: 286 KQNLLHSEKRE 296
Score = 63.3 bits (155), Expect = 4e-11
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 14/138 (10%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA G + I V + G TPL +A + ++ +
Sbjct: 110 LHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV---- 164
Query: 150 DLFNTVHRTAAEKKMNP--FEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D+ + E+ M + L G +ALH G TEV++L
Sbjct: 165 DI-EAARK-EEERIMLRDARQWLNSGHINDVRHAK-----SGGTALHVAAAKGYTEVLKL 217
Query: 208 LLKSGADPTVKDNSGHIP 225
L+++ D +KD G P
Sbjct: 218 LIQARYDVNIKDYDGWTP 235
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 87.3 bits (217), Expect = 1e-19
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 38/159 (23%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL-EAGANPNL 148
L AA+ G+ L+ ++N ++ VN G T L+ A G D V +L + N
Sbjct: 77 LHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
+ G +ALH G ++V+LL
Sbjct: 136 QN---------------------------KL---------GDTALHAAAWKGYADIVQLL 159
Query: 209 LKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247
L GA +++ + D A +A +L+K A
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198
Score = 85.0 bits (211), Expect = 6e-19
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 39/146 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L+ A G ++ +++N ++ LG T LH AA G D V++LL GA +L
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + A A +++
Sbjct: 170 N---------------------------IE---------KKLAFDMATNAACASLLKKKQ 193
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIK 235
+ A T+ + ++ ED++++
Sbjct: 194 GTDAVRTLSNAEDYLD---DEDSDLE 216
Score = 72.3 bits (178), Expect = 1e-14
Identities = 12/107 (11%), Positives = 22/107 (20%), Gaps = 10/107 (9%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF-NTVHRTAAEKKMNPFEVLLKREDEFN 178
G + A + L + +T K ++
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK--GRTGLIPSNYVAEQ 69
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ LH GN + L + D +G
Sbjct: 70 AES-------IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTA 109
Score = 66.5 bits (163), Expect = 1e-12
Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 43/137 (31%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
++ G + + + + PLH AA G + +R L+ N
Sbjct: 49 WWKGTSKGRTGLIPSNYVAEQ-AES-----IDNPLHEAAKRGNLSWLRECLDNRVGVNGL 102
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D G +AL++ G+ ++VE+L
Sbjct: 103 D---------------------------KA---------GSTALYWACHGGHKDIVEMLF 126
Query: 210 -KSGADPTVKDNSGHIP 225
+ + ++ G
Sbjct: 127 TQPNIELNQQNKLGDTA 143
Score = 39.5 bits (93), Expect = 0.001
Identities = 3/59 (5%), Positives = 9/59 (15%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247
G + + + L D + ++
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70
Score = 32.6 bits (75), Expect = 0.24
Identities = 4/46 (8%), Positives = 10/46 (21%), Gaps = 1/46 (2%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDN 135
A A LK + + + + + +
Sbjct: 177 FDMATNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDLEHHHHH 221
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 85.6 bits (213), Expect = 1e-19
Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 37/148 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ AAR + L +E+ DV+ G T L A G VR+L EAGA+ +
Sbjct: 48 WWTAARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D+ G +ALH EVVE L+
Sbjct: 106 DMRG-----------------------------------GLTALHMAAGYVRPEVVEALV 130
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQI 237
+ GAD V+D G + A +
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTP 158
Score = 67.9 bits (167), Expect = 2e-13
Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 41/131 (31%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ G + + DV TP AA + LLE + +
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAA-DVVSE---YETPWWTAARKADEQALSQLLE-DRDVDAV 72
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G +AL + G+ + V LL
Sbjct: 73 D---------------------------EN---------GRTALLFVAGLGSDKCVRLLA 96
Query: 210 KSGADPTVKDN 220
++GAD +D
Sbjct: 97 EAGADLDHRDM 107
Score = 57.1 bits (139), Expect = 1e-09
Identities = 8/106 (7%), Positives = 20/106 (18%), Gaps = 40/106 (37%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G + +G + A+ ++
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYIAADVV------------------------------SE 43
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ + + + LL+ D D +G
Sbjct: 44 ---------YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTA 79
Score = 36.7 bits (86), Expect = 0.009
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 17/69 (24%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKV---------------- 133
L AA Y + ++ +E D+ + G T L +A K
Sbjct: 114 LHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172
Query: 134 DNVRVLLEA 142
+ VL
Sbjct: 173 KVINVLEGQ 181
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 85.2 bits (212), Expect = 1e-19
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 36/136 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ + A G +LK + VN G+TPL A+ G+++ VR LLE GA+P++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ SAL G T++V LLL
Sbjct: 66 A---------------------------KE---------RESALSLASTGGYTDIVGLLL 89
Query: 210 KSGADPTVKDNSGHIP 225
+ D + D +G P
Sbjct: 90 ERDVDINIYDWNGGTP 105
Score = 81.3 bits (202), Expect = 4e-18
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 37/140 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A+ +G + ++ +E D ++ + L +A+ G D V +LLE + N+
Sbjct: 40 LIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G + L Y V + + VE LL
Sbjct: 99 D---------------------------WN---------GGTPLLYAVRGNHVKCVEALL 122
Query: 210 KSGADPTVKDNSGHIPSDYA 229
GAD T + +SG+ P D A
Sbjct: 123 ARGADLTTEADSGYTPMDLA 142
Score = 80.9 bits (201), Expect = 4e-18
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 37/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A+ G + +E +D+N+ G TPL A V V LL GA+
Sbjct: 73 LSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ G++ + V G +V +++
Sbjct: 132 A---------------------------DS---------GYTPMDLAVALGYRKVQQVIE 155
Query: 210 KSGADPTVKDNSGHIP 225
+ P
Sbjct: 156 NHILKLFQSNLVPADP 171
Score = 66.3 bits (163), Expect = 6e-13
Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 37/107 (34%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGAN-PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFN 178
+H A G++D ++ L G N N D
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD---------------------------E 34
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
GF+ L + G E V LL+ GADP +
Sbjct: 35 R---------GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA 72
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 84.7 bits (211), Expect = 2e-19
Identities = 34/136 (25%), Positives = 49/136 (36%), Gaps = 37/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ + A G L T IE + +N G+TPL AA +G++ V LL+ GA+P L
Sbjct: 7 VHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
SAL G T++V++LL
Sbjct: 66 G---------------------------KG---------RESALSLACSKGYTDIVKMLL 89
Query: 210 KSGADPTVKDNSGHIP 225
G D D +G P
Sbjct: 90 DCGVDVNEYDWNGGTP 105
Score = 78.6 bits (195), Expect = 3e-17
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 37/140 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA +G ++ ++N D + + L +A G D V++LL+ G + N
Sbjct: 40 LMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G + L Y V + + V++LL
Sbjct: 99 D---------------------------WN---------GGTPLLYAVHGNHVKCVKMLL 122
Query: 210 KSGADPTVKDNSGHIPSDYA 229
+SGADPT++ +SG+ D A
Sbjct: 123 ESGADPTIETDSGYNSMDLA 142
Score = 76.7 bits (190), Expect = 1e-16
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 37/131 (28%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A G +K ++ +DVN G TPL A V V++LLE+GA+P +
Sbjct: 73 LSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ G++++ V G V +++
Sbjct: 132 T---------------------------DS---------GYNSMDLAVALGYRSVQQVIE 155
Query: 210 KSGADPTVKDN 220
Sbjct: 156 SHLLKLLQNIK 166
Score = 72.8 bits (180), Expect = 3e-15
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
+H A G++ + +E N D +
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTD---------------------------EE 35
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
GF+ L + G VVE LL++GADP +
Sbjct: 36 ---------GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 85.2 bits (212), Expect = 2e-19
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 36/136 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+F R G+A ++ +++N++ D+N G++PLH A G+ V +L+ GA N+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + LH G+ ++V+ LL
Sbjct: 69 N---------------------------RG---------DDTPLHLAASHGHRDIVQKLL 92
Query: 210 KSGADPTVKDNSGHIP 225
+ AD + G++P
Sbjct: 93 QYKADINAVNEHGNVP 108
Score = 70.5 bits (174), Expect = 2e-14
Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 42/139 (30%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA +G ++ ++ K D+N + G PLH A G+ L+ GA ++
Sbjct: 76 LHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ G + + E
Sbjct: 135 N---------------------------KY---------GEMPVDKAKAPLRELLRERAE 158
Query: 210 KSGADP---TVKDNS--GH 223
K G + KD G
Sbjct: 159 KMGQNLNRIPYKDTFWKGT 177
Score = 67.8 bits (167), Expect = 2e-13
Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 37/107 (34%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGAN-PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFN 178
+ G VR+ L+ N N GD +
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGD---------------------------D 37
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
GFS LH+ G + VVE+L+ GA V + P
Sbjct: 38 H---------GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 85.7 bits (213), Expect = 5e-19
Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 37/148 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ AAR + L +E+ DV+ G T L A G VR+L EAGA+ +
Sbjct: 49 WWTAARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D+ G +ALH EVVE L+
Sbjct: 107 DMRG-----------------------------------GLTALHMAAGYVRPEVVEALV 131
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQI 237
+ GAD V+D G + A +
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTP 159
Score = 80.7 bits (200), Expect = 3e-17
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 15/131 (11%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA Y + ++ +E D+ + G T L +A K ++ G L
Sbjct: 115 LHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 173
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ N V + E++ KR G + + +
Sbjct: 174 KVIN-VLEGQVFEYAEVDEIVEKRGK-------------GKDVEYLVRWKDGGDCEWVKG 219
Query: 210 KSGADPTVKDN 220
A+ KD
Sbjct: 220 VHVAEDVAKDY 230
Score = 66.9 bits (164), Expect = 1e-12
Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 41/131 (31%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ G + + DV TP AA + LLE + +
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAA-DVVSE---YETPWWTAARKADEQALSQLLE-DRDVDAV 73
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G +AL + G+ + V LL
Sbjct: 74 D---------------------------EN---------GRTALLFVAGLGSDKCVRLLA 97
Query: 210 KSGADPTVKDN 220
++GAD +D
Sbjct: 98 EAGADLDHRDM 108
Score = 55.7 bits (135), Expect = 8e-09
Identities = 8/110 (7%), Positives = 21/110 (19%), Gaps = 40/110 (36%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G + +G + A+ ++
Sbjct: 15 GAMEYLIEWKDGHSPSWVPSSYIAADVV------------------------------SE 44
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229
+ + + + LL+ D D +G +
Sbjct: 45 ---------YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFV 84
Score = 39.1 bits (92), Expect = 0.002
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 5/85 (5%)
Query: 85 IKDLTLFRAARYGSAKELKTFIENSK-----LDVNMRHPLGWTPLHVAAINGKVDNVRVL 139
K + R G K + ++ + G ++ D V
Sbjct: 159 PKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVK 218
Query: 140 LEAGANPNLGDLFNTVHRTAAEKKM 164
A D + + AE +
Sbjct: 219 GVHVAEDVAKDYEDGLEYAVAESVI 243
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 85.7 bits (213), Expect = 1e-18
Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 19/157 (12%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ A + F+ + + +H+ NG VD + +LL+ + N
Sbjct: 133 FYHAVMLNDVSIVSYFLSEI--PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN 190
Query: 150 DL--FNTVHRTAAEK-KMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE 206
+ F + A + + + L K D+ N SA V+ + E+ +
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFK-----YDI-NIY------SANLENVLLDDAEIAK 238
Query: 207 LLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAE 243
++++ + + + + +I+ K E
Sbjct: 239 MIIEKHVEYKSDSYTKDLDIVKN--NKLDEIISKNKE 273
Score = 84.1 bits (209), Expect = 4e-18
Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 40/133 (30%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF 152
+K+LK+F+ + D G + + A + V V LL AGA NL +
Sbjct: 6 RINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61
Query: 153 NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212
N LH +T++V++LL SG
Sbjct: 62 -------------------------------NEF-----PLHQAATLEDTKIVKILLFSG 85
Query: 213 ADPTVKDNSGHIP 225
D + D+ G+
Sbjct: 86 LDDSQFDDKGNTA 98
Score = 69.5 bits (171), Expect = 3e-13
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 39/137 (28%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGW-TPLHVAAINGKVDNVRVLLEAGANPNL 148
L+ A G+ + +K F++ + GW T + A + V V L +
Sbjct: 99 LYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF- 156
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
S +H + G+ +++ LL
Sbjct: 157 -----------------------DLAI-------------LLSCIHITIKNGHVDMMILL 180
Query: 209 LKSGADPTVKDNSGHIP 225
L ++ IP
Sbjct: 181 LDYMTSTNTNNSLLFIP 197
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 82.1 bits (204), Expect = 1e-18
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 37/137 (27%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
L AA G +E++ + + + + G T L V G LL+ GA+PN+
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
D G S +H G + +++L
Sbjct: 64 QD---------------------------TS---------GTSPVHDAARTGFLDTLKVL 87
Query: 209 LKSGADPTVKDNSGHIP 225
++ GAD V D +G +P
Sbjct: 88 VEHGADVNVPDGTGALP 104
Score = 63.6 bits (156), Expect = 3e-12
Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 38/107 (35%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEA-GANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFN 178
L AA G V VR LL +P+ +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN---------------------------R 34
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G +AL ++ G+T + LLK GA P V+D SG P
Sbjct: 35 F---------GKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSP 71
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 83.6 bits (208), Expect = 3e-18
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 38/140 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ AAR G + + + I +++ + TPL++A N + V+ LLE+GA+ N
Sbjct: 105 IHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-- 161
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + S LH + E+ LL+
Sbjct: 162 ----------------------QGKG-------------QDSPLHAVARTASEELACLLM 186
Query: 210 KSGADPTVKDNSGHIPSDYA 229
GAD K+ G P +
Sbjct: 187 DFGADTQAKNAEGKRPVELV 206
Score = 77.1 bits (191), Expect = 6e-16
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 38/137 (27%)
Query: 85 IKDLT-LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG 143
+ D + + AA +G L+ I VN+ +PLH A + G + V++LL+ G
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 144 ANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTE 203
A N D + L V+G+ +
Sbjct: 60 AQVNGVT---------------------------AD---------WHTPLFNACVSGSWD 83
Query: 204 VVELLLKSGADPTVKDN 220
V LLL+ GA + +
Sbjct: 84 CVNLLLQHGASVQPESD 100
Score = 75.9 bits (188), Expect = 1e-15
Identities = 27/136 (19%), Positives = 41/136 (30%), Gaps = 38/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A G +K +++ VN TPL A ++G D V +LL+ GA+
Sbjct: 40 LHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-- 96
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D S +H G+ E V L+
Sbjct: 97 ----------------------PESD-------------LASPIHEAARRGHVECVNSLI 121
Query: 210 KSGADPTVKDNSGHIP 225
G + K + P
Sbjct: 122 AYGGNIDHKISHLGTP 137
Score = 73.2 bits (181), Expect = 1e-14
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
W+P+H AAI+G ++R L+ G N+ D
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIIT---------------------------AD 35
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
S LH + G+ V++LLK GA H P
Sbjct: 36 ---------HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 72
Score = 45.5 bits (109), Expect = 2e-05
Identities = 6/59 (10%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
+ +L F+E + ++ I +++L L
Sbjct: 203 VELVPPESPLAQL--FLER-EGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 83.0 bits (205), Expect = 4e-18
Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 9/172 (5%)
Query: 85 IKDLTLFRAARYGSAKEL-KTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG 143
+ ++ + A G EL + + + K T LH A G + V LL+ G
Sbjct: 5 VSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 144 ANPNLGDLF-NTV-HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN 201
N D + H A+ + LL + N V G + LHY
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-----NGCTPLHYAASKNR 118
Query: 202 TEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKE 253
E+ +LL+ GA+P KD+ A +++ A +
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Score = 64.5 bits (157), Expect = 7e-12
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
T A + E+ + + + + T +H AA G + V +LL A+ N+
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167
Query: 149 GDL--FNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE 206
D +H E+++ + L+ + + L G ++
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE-----EKTPLQVA--KGGLGLIL 220
Query: 207 LLLKSGADPTV 217
L G + ++
Sbjct: 221 KRLAEGEEASM 231
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 86.0 bits (214), Expect = 5e-18
Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 40/162 (24%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A+ G I++ + V+ +G+TPLHVA+ G + V+ LL+ A+ N
Sbjct: 282 LHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
G+S LH G+T++V LLL
Sbjct: 341 T---------------------------KL---------GYSPLHQAAQQGHTDIVTLLL 364
Query: 210 KSGADPTVKDNSGHIPSDYAEDAN---IKQILQKYAEKYADL 248
K+GA P + G P A+ + +L+ ++ + +
Sbjct: 365 KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406
Score = 82.5 bits (205), Expect = 7e-17
Identities = 37/136 (27%), Positives = 47/136 (34%), Gaps = 37/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G + K ++N K VN + TPLH AA G + V++LLE ANPNL
Sbjct: 51 LHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
G + LH G+ E V LL
Sbjct: 110 T---------------------------TA---------GHTPLHIAAREGHVETVLALL 133
Query: 210 KSGADPTVKDNSGHIP 225
+ A G P
Sbjct: 134 EKEASQACMTKKGFTP 149
Score = 81.8 bits (203), Expect = 9e-17
Identities = 33/147 (22%), Positives = 48/147 (32%), Gaps = 38/147 (25%)
Query: 80 LECQSIKDLT-LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRV 138
C + K T L AA+YG + + +E N G TPLHVA + +D V++
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 139 LLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVV 198
LL G +P+ G++ LH
Sbjct: 198 LLPRGGSPHSPAWN------------------------------------GYTPLHIAAK 221
Query: 199 AGNTEVVELLLKSGADPTVKDNSGHIP 225
EV LL+ G + G P
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTP 248
Score = 81.8 bits (203), Expect = 1e-16
Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 37/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A + + +K + + G+TPLH+AA +V+ R LL+ G + N
Sbjct: 183 LHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
G + LH G+ E+V LLL
Sbjct: 242 S---------------------------VQ---------GVTPLHLAAQEGHAEMVALLL 265
Query: 210 KSGADPTVKDNSGHIP 225
A+ + + SG P
Sbjct: 266 SKQANGNLGNKSGLTP 281
Score = 76.0 bits (188), Expect = 8e-15
Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 40/144 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A+ YG+ K +K +++ + DVN + LG++PLH AA G D V +LL+ GA+PN
Sbjct: 315 LHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL- 208
+D G + L G V ++L
Sbjct: 374 S---------------------------SD---------GTTPLAIAKRLGYISVTDVLK 397
Query: 209 --LKSGADPTVKDNSGHIPSDYAE 230
+ V D + +
Sbjct: 398 VVTDETSFVLVSDKHRMSFPETVD 421
Score = 75.2 bits (186), Expect = 2e-14
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 36/114 (31%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
G TPLHVA+ G + V+ LL+ GA+PN+ +
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN--------------------- 44
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ LH AG+TEV + LL++ A K P
Sbjct: 45 ------VK---------VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP 83
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 81.3 bits (202), Expect = 1e-17
Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 36/136 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A + + I N D++ R G TPL +AA + L+ + A+ N
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G SALH+ N + +LL
Sbjct: 122 D---------------------------DL---------GKSALHWAAAVNNVDAAVVLL 145
Query: 210 KSGADPTVKDNSGHIP 225
K+GA+ +++N P
Sbjct: 146 KNGANKDMQNNREETP 161
Score = 65.9 bits (162), Expect = 2e-12
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 37/119 (31%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G T LH+AA + D + LLEA A+ N+ D N
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQD---------------------------NM 57
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGA-DPTVKDNSGHIPSDYAEDANIKQI 237
G + LH V A V ++L+++ A D + + G P A ++ +
Sbjct: 58 ---------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 107
Score = 65.5 bits (161), Expect = 3e-12
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 37/131 (28%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA + ++N + +M++ TPL +AA G + +VLL+ AN ++
Sbjct: 129 LHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + + ++V LL
Sbjct: 188 D---------------------------HM---------DRLPRDIAQERMHHDIVRLLD 211
Query: 210 KSGADPTVKDN 220
+ + + +
Sbjct: 212 EYNLVRSPQLH 222
Score = 45.5 bits (109), Expect = 1e-05
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
G +ALH ++ + LL++ AD ++DN G P A A+ + + Q
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75
Score = 30.5 bits (70), Expect = 1.1
Identities = 5/28 (17%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 199 AGNTEVVELLLKSGAD-PTVKDNSGHIP 225
V+ + GA D +G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETA 28
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 79.0 bits (196), Expect = 1e-17
Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 37/148 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+YG + + + + R + TPLH+AA G + V VLL+ GA+ N
Sbjct: 38 LHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-- 94
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
K M +ALH+ + EVVELL+
Sbjct: 95 -----------AKDML-----------------------KMTALHWATEHNHQEVVELLI 120
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQI 237
K GAD + D + D + +
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDL 148
Score = 72.8 bits (180), Expect = 2e-15
Identities = 33/137 (24%), Positives = 44/137 (32%), Gaps = 38/137 (27%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
L AAR G E++ + N LG +PLH+AA G VLL AG + +
Sbjct: 5 KLLEAARAGQDDEVRILMAN-GAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
+ LH G+ +VE+L
Sbjct: 63 RT---------------------------KV---------DRTPLHMAASEGHANIVEVL 86
Query: 209 LKSGADPTVKDNSGHIP 225
LK GAD KD
Sbjct: 87 LKHGADVNAKDMLKMTA 103
Score = 64.3 bits (158), Expect = 2e-12
Identities = 22/118 (18%), Positives = 30/118 (25%), Gaps = 37/118 (31%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
L AA G+ D VR+L+ GA
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT------------------------TDWL---- 33
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237
G S LH G+ E+LL++G + P A I
Sbjct: 34 ---------GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI 82
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 81.3 bits (202), Expect = 1e-17
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 41/163 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAING-KVDNVRVLLEAGANPNL 148
+ AA++G + I DV+M G TPL AA VD R+LL + NL
Sbjct: 113 IHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
GD ++ +ALH+ V+AGNT V+ LL
Sbjct: 172 GDKYH-----------------------------------KNTALHWAVLAGNTTVISLL 196
Query: 209 LKSGADPTVKDNSGHIPSDYAEDAN----IKQILQKYAEKYAD 247
L++GA+ ++ G D A+ I + + K D
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 79.8 bits (198), Expect = 5e-17
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 36/136 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ +A +YG + + +E DV T LH AAIN ++D V+ + GA +
Sbjct: 13 IVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D L + LH+ G+ +V L+
Sbjct: 72 G---------------------------GD--------LNSTPLHWATRQGHLSMVVQLM 96
Query: 210 KSGADPTVKDNSGHIP 225
K GADP++ D G
Sbjct: 97 KYGADPSLIDGEGCSC 112
Score = 74.4 bits (184), Expect = 4e-15
Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 38/137 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMR-HPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
L AA +K +I V+ L TPLH A G + V L++ GA+P+L
Sbjct: 46 LHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
D + G S +H G+T +V L
Sbjct: 105 ID---------------------------GE---------GCSCIHLAAQFGHTSIVAYL 128
Query: 209 LKSGADPTVKDNSGHIP 225
+ G D + D +G P
Sbjct: 129 IAKGQDVDMMDQNGMTP 145
Score = 65.1 bits (160), Expect = 4e-12
Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 39/132 (29%)
Query: 90 LFRAARYGSAKE-LKTFIENSKLDVNMR-HPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L AA + + + + + VN+ T LH A + G + +LLEAGAN +
Sbjct: 146 LMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Query: 148 LGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
+ G SAL N ++
Sbjct: 205 AQN---------------------------IK---------GESALDLAKQRKNVWMINH 228
Query: 208 LLKSGADPTVKD 219
L ++ +
Sbjct: 229 LQEARQAKGYDN 240
Score = 64.8 bits (159), Expect = 7e-12
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 36/101 (35%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
+ A G + R L+EAG + D +
Sbjct: 9 STWDIVKATQYGIYERCRELVEAGYDVRQPD---------------------------KE 41
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDN 220
+ LH+ + ++V+ + GA
Sbjct: 42 ---------NVTLLHWAAINNRIDLVKYYISKGAIVDQLGG 73
Score = 42.8 bits (102), Expect = 1e-04
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ G E L+++G D D
Sbjct: 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTL 45
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 81.7 bits (203), Expect = 1e-17
Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 36/136 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A + + I N D++ R G TPL +AA + L+ + A+ N
Sbjct: 94 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G SALH+ N + +LL
Sbjct: 154 D---------------------------DL---------GKSALHWAAAVNNVDAAVVLL 177
Query: 210 KSGADPTVKDNSGHIP 225
K+GA+ +++N P
Sbjct: 178 KNGANKDMQNNREETP 193
Score = 67.1 bits (165), Expect = 1e-12
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 37/119 (31%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G T LH+AA + D + LLEA A+ N+ D N
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQD---------------------------NM 89
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGA-DPTVKDNSGHIPSDYAEDANIKQI 237
G + LH V A V ++L+++ A D + + G P A ++ +
Sbjct: 90 ---------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 139
Score = 65.6 bits (161), Expect = 4e-12
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 37/126 (29%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA + ++N + +M++ TPL +AA G + +VLL+ AN ++
Sbjct: 161 LHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + + ++V LL
Sbjct: 220 D---------------------------HM---------DRLPRDIAQERMHHDIVRLLD 243
Query: 210 KSGADP 215
Sbjct: 244 LEHHHH 249
Score = 62.9 bits (154), Expect = 4e-11
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 48/142 (33%)
Query: 111 LDVNMRHPLGWTPLHVAAINGKVDN-------------VRVLLEAGANPNLGDLFNTVHR 157
+DVN+R P G+TPL +A+ +G + + GA+ +
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH---------- 50
Query: 158 TAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTV 217
+ D G +ALH ++ + LL++ AD +
Sbjct: 51 --NQT------------DRT-----------GETALHLAARYSRSDAAKRLLEASADANI 85
Query: 218 KDNSGHIPSDYAEDANIKQILQ 239
+DN G P A A+ + + Q
Sbjct: 86 QDNMGRTPLHAAVSADAQGVFQ 107
Score = 51.7 bits (125), Expect = 2e-07
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
LF AAR GS + K +++ + ++ + P +A D VR+L + +
Sbjct: 194 LFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 83.3 bits (207), Expect = 2e-17
Identities = 34/137 (24%), Positives = 49/137 (35%), Gaps = 36/137 (26%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
L AAR G+ ++L + ++ + TPLH+AA +V V++LL+ GA+ +
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
D G LH G+ EV ELL
Sbjct: 87 KD---------------------------KG---------GLVPLHNACSYGHYEVTELL 110
Query: 209 LKSGADPTVKDNSGHIP 225
LK GA D P
Sbjct: 111 LKHGACVNAMDLWQFTP 127
Score = 82.2 bits (204), Expect = 4e-17
Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 41/160 (25%)
Query: 90 LFRAARYGSAKEL---KTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146
L A K + + +VN ++ TPLHVAA D + VL + GA
Sbjct: 215 LHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Query: 147 NLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE 206
N D + G +ALH +AG+ +
Sbjct: 274 NALD---------------------------SL---------GQTALHRAALAGHLQTCR 297
Query: 207 LLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
LLL G+DP++ G + + ++QIL +
Sbjct: 298 LLLSYGSDPSIISLQGFTAAQMGNE-AVQQILSESTPMRT 336
Score = 70.2 bits (173), Expect = 4e-13
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 42/133 (31%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA ++ ++ +N LG T LH AA+ G + R+LL G++P++
Sbjct: 251 LHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
GF+A G E V+ +L
Sbjct: 310 S---------------------------LQ---------GFTAAQMG-----NEAVQQIL 328
Query: 210 KSGADPTVKDNSG 222
D
Sbjct: 329 SESTPMRTSDVDY 341
Score = 61.4 bits (150), Expect = 2e-10
Identities = 20/115 (17%), Positives = 31/115 (26%), Gaps = 37/115 (32%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDN-VRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVL 170
+ L AA +G + + +L N + D
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD-------------------- 55
Query: 171 LKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ LH +V+LLL+ GAD KD G +P
Sbjct: 56 -------GR---------KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP 94
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 79.0 bits (196), Expect = 2e-17
Identities = 33/136 (24%), Positives = 44/136 (32%), Gaps = 36/136 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+ G + +K ++ TPLH AA +V V LL+ GA+ +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D G LH G+ EV ELL+
Sbjct: 72 D---------------------------KG---------GLVPLHNACSYGHYEVAELLV 95
Query: 210 KSGADPTVKDNSGHIP 225
K GA V D P
Sbjct: 96 KHGAVVNVADLWKFTP 111
Score = 62.0 bits (152), Expect = 2e-11
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 38/124 (30%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A YG + + +++ VN+ +TPLH AA GK + ++LL+ GA+P
Sbjct: 79 LHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ D G + L V G+T++ +LL
Sbjct: 138 N---------------------------RD---------GNTPLDL-VKDGDTDIQDLLR 160
Query: 210 KSGA 213
A
Sbjct: 161 GDAA 164
Score = 59.7 bits (146), Expect = 1e-10
Identities = 22/107 (20%), Positives = 29/107 (27%), Gaps = 37/107 (34%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEA-GANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFN 178
L AA G V+ V+ L N +
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE---------------------------G 40
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ LH+ VVE LL+ GAD KD G +P
Sbjct: 41 R---------QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVP 78
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 81.8 bits (203), Expect = 2e-17
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 38/140 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ AAR G + + + I +++ + TPL++A N + V+ LLE+GA+ N
Sbjct: 161 IHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-- 217
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + S LH V + E+ LL+
Sbjct: 218 ----------------------QGKG-------------QDSPLHAVVRTASEELACLLM 242
Query: 210 KSGADPTVKDNSGHIPSDYA 229
GAD K+ G P +
Sbjct: 243 DFGADTQAKNAEGKRPVELV 262
Score = 77.9 bits (193), Expect = 5e-16
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 37/131 (28%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ AA +G L+ I VN+ +PLH A + G + V++LL+ GA N
Sbjct: 63 MHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + L V+G+ + V LLL
Sbjct: 122 T---------------------------AD---------WHTPLFNACVSGSWDCVNLLL 145
Query: 210 KSGADPTVKDN 220
+ GA + +
Sbjct: 146 QHGASVQPESD 156
Score = 75.2 bits (186), Expect = 4e-15
Identities = 27/136 (19%), Positives = 41/136 (30%), Gaps = 38/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A G +K +++ VN TPL A ++G D V +LL+ GA+
Sbjct: 96 LHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-- 152
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
E S +H G+ E V L+
Sbjct: 153 ----------PESD-------------------------LASPIHEAARRGHVECVNSLI 177
Query: 210 KSGADPTVKDNSGHIP 225
G + K + P
Sbjct: 178 AYGGNIDHKISHLGTP 193
Score = 71.8 bits (177), Expect = 5e-14
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
W+P+H AAI+G ++R L+ G N+ D
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIIT---------------------------AD 91
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
S LH + G+ V++LLK GA H P
Sbjct: 92 ---------HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 128
Score = 63.3 bits (155), Expect = 3e-11
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 126 VAAINGKVDNVRVLLEAGANPNLGDLFNT-VHRTAAEKKMNPFEVLLKREDEFNDVLNPN 184
+ + + + L+ G++ D + + + + L D ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-- 58
Query: 185 MTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+S +H + G+ + L+ G + P
Sbjct: 59 ----DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSP 95
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 81.8 bits (203), Expect = 2e-17
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 35/140 (25%)
Query: 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN 145
++ E + E+ +L + + G TPLHVA I+ + VR+L +AGA+
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183
Query: 146 PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
N E G + LH V A V+
Sbjct: 184 LN-----------KPEPTC------------------------GRTPLHLAVEAQAASVL 208
Query: 206 ELLLKSGADPTVKDNSGHIP 225
ELLLK+GADPT + G P
Sbjct: 209 ELLLKAGADPTARMYGGRTP 228
Score = 77.6 bits (192), Expect = 5e-16
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 38/138 (27%)
Query: 90 LFRAARYGSAKELKTFIEN--SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L A + L + +++++ LG T LH+AAI G+ V L AGA
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72
Query: 148 LGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
+ + G +ALH +
Sbjct: 73 VAE---------------------------RG---------GHTALHLACRVRAHTCACV 96
Query: 208 LLKSGADPTVKDNSGHIP 225
LL+ + ++
Sbjct: 97 LLQPRPSHPRDASDTYLT 114
Score = 69.9 bits (172), Expect = 2e-13
Identities = 23/106 (21%), Positives = 30/106 (28%), Gaps = 33/106 (31%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G T LH+A I+ + LL A D
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLD--------LQNDL---------------- 44
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G +ALH + G VE L +GA V + GH
Sbjct: 45 ---------GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81
Score = 61.0 bits (149), Expect = 2e-10
Identities = 17/121 (14%), Positives = 28/121 (23%), Gaps = 37/121 (30%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A +A L+ ++ D R G TPL A + R+L GA
Sbjct: 196 LHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D S +++ +
Sbjct: 255 G---------------------------GD---------KLSPCSSSGSDSDSDNRDEGD 278
Query: 210 K 210
+
Sbjct: 279 E 279
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 80.4 bits (199), Expect = 3e-17
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 38/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L R K I + + V +PL L +++ G+ D V+ ++ +P+L
Sbjct: 9 LPPGKRTNLRKTGSERIAH-GMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ ++ G +ALH V AG+TE+V+ L+
Sbjct: 67 N---------------------------DE---------GITALHNAVCAGHTEIVKFLV 90
Query: 210 KSGADPTVKDNSGHIP 225
+ G + D+ G P
Sbjct: 91 QFGVNVNAADSDGWTP 106
Score = 75.7 bits (187), Expect = 1e-15
Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 37/133 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L ++ G ++ I D ++ + G T LH A G + V+ L++ G N N
Sbjct: 41 LLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D +D G++ LH N +V + L+
Sbjct: 100 D---------------------------SD---------GWTPLHCAASCNNVQVCKFLV 123
Query: 210 KSGADPTVKDNSG 222
+SGA S
Sbjct: 124 ESGAAVFAMTYSD 136
Score = 75.0 bits (185), Expect = 2e-15
Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 34/166 (20%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A G + +K ++ ++VN GWTPLH AA V + L+E+GA
Sbjct: 74 LHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-- 130
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + + + G T+ + L
Sbjct: 131 -----------AMTYSDMQ--------------------TAADKCEEMEEGYTQCSQFLY 159
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAE 255
+ + E N ++ K + + RE E E
Sbjct: 160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDE 205
Score = 67.6 bits (166), Expect = 6e-13
Identities = 10/106 (9%), Positives = 22/106 (20%), Gaps = 37/106 (34%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G L + G
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNP----------------------------- 35
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
L + L + G ++V+ ++ DP++ ++ G
Sbjct: 36 --------LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 73
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 77.9 bits (193), Expect = 3e-17
Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 37/140 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA G +E++ +E + N + G P+ V G +LL GA PN
Sbjct: 16 LATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA 73
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D +T +H G + + +L
Sbjct: 74 D-------------------------------PATLT----RPVHDAAREGFLDTLVVLH 98
Query: 210 KSGADPTVKDNSGHIPSDYA 229
++GA V+D G +P D A
Sbjct: 99 RAGARLDVRDAWGRLPVDLA 118
Score = 71.4 bits (176), Expect = 7e-15
Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 37/103 (35%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
L AA G+V+ VR LLEAGANPN + +
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPN---------------------------SY 44
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSG 222
G + ++ G+ V ELLL GA+P D +
Sbjct: 45 ---------GRRPIQV-MMMGSARVAELLLLHGAEPNCADPAT 77
Score = 69.4 bits (171), Expect = 3e-14
Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 37/112 (33%)
Query: 112 DVNMRHPLGWT-PLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVL 170
+ N P T P+H AA G +D + VL AGA ++ D
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD-------------------- 108
Query: 171 LKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSG 222
G + G+ +V L + +++
Sbjct: 109 -------AW---------GRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144
Score = 55.9 bits (136), Expect = 2e-09
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ AAR G L +++R G P+ +A G D R L A
Sbjct: 82 VHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS 140
Query: 150 DLFNTVHRTAAE 161
+ AAE
Sbjct: 141 N---HARIDAAE 149
Score = 27.8 bits (63), Expect = 6.6
Identities = 6/45 (13%), Positives = 9/45 (20%), Gaps = 6/45 (13%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVD 134
+ A G + G + A G D
Sbjct: 115 VDLAEELGHRDVARYLRAA-AGGTR-----GSNHARIDAAEGPSD 153
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 76.6 bits (190), Expect = 4e-17
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 37/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+ G A+E+K + DVN R G TPLH+AA NG + V++LL GA+ N
Sbjct: 13 LHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D G + H G+ E+V+LL
Sbjct: 72 S---------------------------KD---------GNTPEHLAKKNGHHEIVKLLD 95
Query: 210 KSGADPTVKDNSGHIP 225
GAD +
Sbjct: 96 AKGADVNARSWGSSHH 111
Score = 69.3 bits (171), Expect = 1e-14
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G TPLH AA NG + V+ LL GA+ N D
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARS---------------------------KD 41
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G + LH G+ E+V+LLL GAD + G+ P
Sbjct: 42 ---------GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP 78
Score = 27.0 bits (61), Expect = 8.3
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLH 125
A + G + +K DVN R H
Sbjct: 79 EHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHHH 113
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 82.2 bits (204), Expect = 4e-17
Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGK--VDNVRVLLEAGANPN 147
E +++ +++H G T LH G ++ +++L++ GA+P
Sbjct: 115 ESLLNECDE-------REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167
Query: 148 LGDLF-NTV-HRTAAEKKMNPFEVLLKREDEFNDVLNPNM-TFLGFSALHYGVVAGNTEV 204
D T R + ++++ + + + G S LH+ ++ +V
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL-RLDYANKQGNSHLHWAILINWEDV 226
Query: 205 VELLLKSGADPTVKDNSGHIP 225
++ G D ++DN +P
Sbjct: 227 AMRFVEMGIDVNMEDNEHTVP 247
Score = 76.4 bits (189), Expect = 4e-15
Identities = 18/153 (11%), Positives = 33/153 (21%), Gaps = 48/153 (31%)
Query: 90 LFRAARYGS---AKEL---------KTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVR 137
L+ + R KEL + ++ V + + AA K + ++
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307
Query: 138 VLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGV 197
+L E N G
Sbjct: 308 LLQEKLDEVVRSL---------------------------NT---------GAGGAVKRK 331
Query: 198 VAGNTEVVELLLKSGADPTVKDNSGHIPSDYAE 230
V + L A + S S ++
Sbjct: 332 KKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364
Score = 74.9 bits (185), Expect = 9e-15
Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 44/161 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKL----DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN 145
L RA + + + L ++ ++ + G + LH A + D +E G +
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236
Query: 146 PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
N+ D N+ L+ V A +
Sbjct: 237 VNMED---------------------------NE---------HTVPLYLSVRAAMVLLT 260
Query: 206 ELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYA 246
+ LL+ ++ H +++ A
Sbjct: 261 KELLQKTDVFLIQACPYH----NGTTVLPDRVVWLDFVPAA 297
Score = 71.1 bits (175), Expect = 2e-13
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 36/115 (31%)
Query: 106 IENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMN 165
+ KL+ +HVAA G+ D VR L+E G +P + +
Sbjct: 6 TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN--------------- 50
Query: 166 PFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDN 220
G +ALH G + + L G ++
Sbjct: 51 ------------RF---------GCTALHLACKFGCVDTAKYLASVGEVHSLWHG 84
Score = 53.3 bits (129), Expect = 9e-08
Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 51/138 (36%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+ A + +E +K G P + + + E G++
Sbjct: 88 IHLAVMANKTDLVVALVEGAKER-------GQMPESLLNECDEREVN----EIGSH---- 132
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN--TEVVEL 207
K G +ALH+ V G E++++
Sbjct: 133 ---------VKHCK-------------------------GQTALHWCVGLGPEYLEMIKI 158
Query: 208 LLKSGADPTVKDNSGHIP 225
L++ GA PT KD + P
Sbjct: 159 LVQLGASPTAKDKADETP 176
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 80.1 bits (199), Expect = 4e-17
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 36/136 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+ G + ++ + N ++DVN + GWTP+ A VD V++LL G++ N+
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D N+ LH+ +G ++ E+LL
Sbjct: 141 D---------------------------NE---------ENICLHWAAFSGCVDIAEILL 164
Query: 210 KSGADPTVKDNSGHIP 225
+ D + G P
Sbjct: 165 AAKCDLHAVNIHGDSP 180
Score = 71.3 bits (176), Expect = 4e-14
Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 36/114 (31%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
+ M H +PLH AA G VD +L++AGAN +
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS--------------------- 41
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
D + L + E V+ L+K+GA KD G
Sbjct: 42 ------ED---------QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 78.2 bits (194), Expect = 4e-17
Identities = 44/136 (32%), Positives = 59/136 (43%), Gaps = 37/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN GWTPLH+AA NG ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G + L + G+ E+VE+LL
Sbjct: 77 D---------------------------HA---------GMTPLRLAALFGHLEIVEVLL 100
Query: 210 KSGADPTVKDNSGHIP 225
K+GAD D GH P
Sbjct: 101 KNGADVNANDMEGHTP 116
Score = 73.9 bits (183), Expect = 1e-15
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 37/148 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA G + ++ ++N DVN G TPL +AA+ G ++ V VLL+ GA+ N
Sbjct: 51 LHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G + LH + G+ E+VE+LL
Sbjct: 110 D---------------------------ME---------GHTPLHLAAMFGHLEIVEVLL 133
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQI 237
K+GAD +D G D + D + +
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 67.4 bits (166), Expect = 2e-13
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
L AA G+ D VR+L+ GA+ N D
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAED---------------------------AS 46
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G++ LH G+ E+VE+LLK+GAD D++G P
Sbjct: 47 ---------GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTP 83
Score = 60.1 bits (147), Expect = 8e-11
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 37/121 (30%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA +G + ++ ++N DVN G TPLH+AA+ G ++ V VLL+ GA+ N
Sbjct: 84 LRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D G +A + GN ++ E+L
Sbjct: 143 D---------------------------KF---------GKTAFDISIDNGNEDLAEILQ 166
Query: 210 K 210
K
Sbjct: 167 K 167
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 76.7 bits (190), Expect = 5e-17
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 37/148 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DVN + G TPL++A +G ++ V VLL+ GA+ N
Sbjct: 18 LLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D GF+ LH G+ E+ E+LL
Sbjct: 77 D---------------------------AI---------GFTPLHLAAFIGHLEIAEVLL 100
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQI 237
K GAD +D G D + + +
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 64.3 bits (158), Expect = 1e-12
Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 36/118 (30%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
L AA G+ D VR+L+ GA+ N D
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKD---------------------------EY 46
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237
G + L+ G+ E+VE+LLK+GAD D G P A +I
Sbjct: 47 ---------GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI 95
Score = 58.6 bits (143), Expect = 1e-10
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 37/121 (30%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L+ A +G + ++ ++N DVN +G+TPLH+AA G ++ VLL+ GA+ N
Sbjct: 51 LYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D G +A + GN ++ E+L
Sbjct: 110 D---------------------------KF---------GKTAFDISIGNGNEDLAEILQ 133
Query: 210 K 210
K
Sbjct: 134 K 134
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 79.8 bits (198), Expect = 6e-17
Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 38/151 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHP-LGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
L A + ++ +E D++ G +PL A N + V++LL+ GAN N
Sbjct: 120 LHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
G SALH G +V L
Sbjct: 179 QM---------------------------YS---------GSSALHSASGRGLLPLVRTL 202
Query: 209 LKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
++SGAD ++K+ P A + IL+
Sbjct: 203 VRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 70.9 bits (175), Expect = 5e-14
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 43/143 (30%)
Query: 90 LFRAARYGSAKELKTFIENSKL---DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146
L A G+ + + + ++++ + L TPLH+A I VR+L+ AGA+P
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 147 NLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE 206
D G +A H + +
Sbjct: 73 MALD---------------------------RH---------GQTAAHLACEHRSPTCLR 96
Query: 207 LLLKSGADPTV----KDNSGHIP 225
LL S A T+ ++ G
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTA 119
Score = 65.2 bits (160), Expect = 5e-12
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 40/124 (32%)
Query: 120 GWTPLHVAAINGKVDNVRVLLE----AGANPNLGDLFNTVHRTAAEKKMNPFEVLLKRED 175
G TPLH+A + G + V L+ G ++ +
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN------------------------- 43
Query: 176 EFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIK 235
N + LH V+ VV LL+ +GA P D G + A +
Sbjct: 44 --NL---------RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 92
Query: 236 QILQ 239
L+
Sbjct: 93 TCLR 96
Score = 63.2 bits (155), Expect = 2e-11
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 37/124 (29%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A S ++ +++ +VN + G + LH A+ G + VR L+ +GA+ +L
Sbjct: 154 LIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + L +++
Sbjct: 213 N---------------------------CH---------NDTPLMVARSRRVIDILRGKA 236
Query: 210 KSGA 213
A
Sbjct: 237 TRPA 240
Score = 48.6 bits (117), Expect = 2e-06
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN 145
L A+ G ++T + + D ++++ TPL VA +D +R A+
Sbjct: 187 LHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 75.7 bits (187), Expect = 7e-17
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 40/147 (27%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF 152
+ + + + L AA G+ D VR+L+ GA+ D
Sbjct: 1 GSSHHHHHHSSGLVPR-GSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKD-- 54
Query: 153 NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212
+ G + LH G+ EVV+LLL++G
Sbjct: 55 -------------------------KN---------GSTPLHLAARNGHLEVVKLLLEAG 80
Query: 213 ADPTVKDNSGHIPSDYAEDANIKQILQ 239
AD +D G D + D + + +
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAE 107
Score = 53.7 bits (130), Expect = 4e-09
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G E++ + N DV + G TPLH+AA NG ++ V++LLEAGA+
Sbjct: 28 LLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 150 D 150
D
Sbjct: 87 D 87
Score = 32.5 bits (75), Expect = 0.10
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVL 139
L AAR G + +K +E DV + G T ++ NG D +L
Sbjct: 61 LHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 78.8 bits (195), Expect = 1e-16
Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 31/144 (21%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+ + L ++ +V+ R +G T LH+AA+ ++ VL+EA
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE---- 62
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ ++ G +ALH V+ N +V LL
Sbjct: 63 -----LVFEPMTSELY----------------------EGQTALHIAVINQNVNLVRALL 95
Query: 210 KSGADPTVKDNSGHIPSDYAEDAN 233
GA + +
Sbjct: 96 ARGASVSARATGSVFHYRPHNLIY 119
Score = 67.2 bits (165), Expect = 9e-13
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 35/138 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVR----VLLEAGAN 145
L AA GS + ++ IE+ D+ + LG T LH+ + +LL
Sbjct: 125 LSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 146 PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
+L L + G + V GN +
Sbjct: 184 DHLKSLELV-------------------PNNQ-----------GLTPFKLAGVEGNIVMF 213
Query: 206 ELLLKSGADPTVKDNSGH 223
+ L++ + H
Sbjct: 214 QHLMQKRKHIAAAHHHHH 231
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 75.5 bits (187), Expect = 1e-16
Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 37/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G + +K +E DVN + G TPLH+AA NG ++ V++LLEAGA+ N
Sbjct: 6 LHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G + LH G+ EVV+LLL
Sbjct: 65 D---------------------------KN---------GRTPLHLAARNGHLEVVKLLL 88
Query: 210 KSGADPTVKDNSGHIP 225
++GAD KD +G P
Sbjct: 89 EAGADVNAKDKNGRTP 104
Score = 71.6 bits (177), Expect = 3e-15
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G TPLH+AA NG ++ V++LLEAGA+ N D +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD---------------------------KN 34
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G + LH G+ EVV+LLL++GAD KD +G P
Sbjct: 35 ---------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Score = 62.7 bits (154), Expect = 3e-12
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 37/124 (29%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G + +K +E DVN + G TPLH+AA NG ++ V++LLEAGA+ N
Sbjct: 39 LHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G + LH G+ EVV+LLL
Sbjct: 98 D---------------------------KN---------GRTPLHLAARNGHLEVVKLLL 121
Query: 210 KSGA 213
++GA
Sbjct: 122 EAGA 125
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 75.6 bits (187), Expect = 2e-16
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 37/111 (33%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
++M L AA G+V+ VR LLEAGA+PN +
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN--------------------- 42
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSG 222
G + ++ G+ +V ELLL GA+P D +
Sbjct: 43 ------RF---------GRRPIQV-MMMGSAQVAELLLLHGAEPNCADPAT 77
Score = 65.5 bits (161), Expect = 5e-13
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 37/104 (35%)
Query: 112 DVNMRHPLGWT-PLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVL 170
+ N P T P+H AA G +D + VL AGA ++ D
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD-------------------- 108
Query: 171 LKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214
G + G+ ++ L + D
Sbjct: 109 -------AW---------GRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 52.4 bits (127), Expect = 2e-08
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN 145
+ AAR G L +++ G P+ +A G D R L A +
Sbjct: 82 VHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 77.9 bits (193), Expect = 2e-16
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 39/151 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP-NL 148
L A + + IEN V ++ PLH AA G + + +L G + N
Sbjct: 111 LHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
D G++ L + + G+ + LL
Sbjct: 170 QD---------------------------KQ---------GWTPLFHALAEGHGDAAVLL 193
Query: 209 L-KSGADPTVKDNSGHIPSDYAEDANIKQIL 238
+ K GA+ + DN G D A + +K+
Sbjct: 194 VEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224
Score = 76.3 bits (189), Expect = 6e-16
Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 35/138 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L +A +++ + + + + G PLH + + LL N NL
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + + G++ H GN EVV+ L
Sbjct: 66 DYPD------------------------DS---------GWTPFHIACSVGNLEVVKSLY 92
Query: 210 --KSGADPTVKDNSGHIP 225
D N G
Sbjct: 93 DRPLKPDLNKITNQGVTC 110
Score = 59.0 bits (144), Expect = 5e-10
Identities = 31/122 (25%), Positives = 39/122 (31%), Gaps = 40/122 (32%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANPNL 148
L RAA GS K ++ K VN + GWTPL A G D +L+E GA +L
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
D N G A A N +V +
Sbjct: 204 VD---------------------------NK---------GAKAEDV---ALNEQVKKFF 224
Query: 209 LK 210
L
Sbjct: 225 LN 226
Score = 57.8 bits (141), Expect = 1e-09
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 40/111 (36%)
Query: 119 LGWTPLHVAAINGKVDNVR-VLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEF 177
+ PLH A + + V+ +L + D
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKD--------------------------- 33
Query: 178 NDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADP---TVKDNSGHIP 225
D G LH+ V E+ LL + D+SG P
Sbjct: 34 QD---------GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 78.1 bits (193), Expect = 2e-16
Identities = 29/176 (16%), Positives = 49/176 (27%), Gaps = 43/176 (24%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA G + ++ ++ D + + G T LH A V L+ AGAN N
Sbjct: 25 LLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G++ LH +T + L+
Sbjct: 84 D---------------------------SH---------GWTPLHCAASCNDTVICMALV 107
Query: 210 KSGADPTVKD-NSGHIPSDYAEDA--NIKQILQKYAEKYADLQREKEAEERRKYPL 262
+ GA + G + + A+ + Y L
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM---GLMNSGAVYAL 160
Score = 68.1 bits (167), Expect = 4e-13
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 36/118 (30%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
L AA+ G+++ V+ ++ +P+ + +
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPN---------------------------EE 53
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237
G +ALH + N +V+ L+ +GA+ D+ G P A N I
Sbjct: 54 ---------GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVI 102
Score = 65.4 bits (160), Expect = 4e-12
Identities = 21/151 (13%), Positives = 34/151 (22%), Gaps = 38/151 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A + + I +VN GWTPLH AA L++ GA
Sbjct: 58 LHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA--GNTEVVEL 207
L + G +A G +
Sbjct: 117 TLSD-----------------------------------GATAFEKCDPYREGYADCATY 141
Query: 208 LLKSGADPTVKDNSGHIPSDYAEDANIKQIL 238
L + ++ ++
Sbjct: 142 LADVEQSMGLMNSGAVYALWDYSAEFGDELS 172
Score = 46.5 bits (111), Expect = 8e-06
Identities = 16/142 (11%), Positives = 33/142 (23%), Gaps = 11/142 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMR-HPLGWTPLHVAAI--NGKVDNVRVLLEAGANP 146
L AA +++ + G T G D L + +
Sbjct: 91 LHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149
Query: 147 NLGDLF-NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
L + + + E+ + + + + + + G V
Sbjct: 150 GLMNSGAVYALWDYSAE--FGDELSFREGESVTVLRRDGP---EETDWWWAALHGQEGYV 204
Query: 206 ELLLKSGADPTVKDNSGHIPSD 227
G P VK +
Sbjct: 205 PRNYF-GLFPRVKPQRSKVKHH 225
Score = 45.3 bits (108), Expect = 2e-05
Identities = 12/90 (13%), Positives = 20/90 (22%), Gaps = 33/90 (36%)
Query: 136 VRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHY 195
+R +L +P L
Sbjct: 1 MRSVLRKAGSPRKAR---------------------------------RARLNPLVLLLD 27
Query: 196 GVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ G EVV+ +K DP+ + G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITA 57
Score = 36.5 bits (85), Expect = 0.016
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNV-RVLLEAGAN 145
EL F E + V R T AA++G+ V R
Sbjct: 158 YALWDYSAEFGDELS-FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 214
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 77.1 bits (190), Expect = 7e-16
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 35/155 (22%)
Query: 89 TLFRAARYGSAKELKTFIENSKL------DVNMRHP-LGWTPLHVAAIN---GKVDNVRV 138
++F A + +EL++ + + D + P G T L A +N G+ D + +
Sbjct: 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75
Query: 139 LLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVV 198
LL+ + F T + K G +ALH +
Sbjct: 76 LLDVARKTDSLKQFVNASYTDSYYK-------------------------GQTALHIAIE 110
Query: 199 AGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233
N +V LL+++GAD N
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145
Score = 67.9 bits (166), Expect = 1e-12
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 25/117 (21%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
+ G T LH+A + V +L+E GA+
Sbjct: 93 SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA--------------------- 131
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG---ADPTVKDNSGHIP 225
D F + G L +V+ LL++ AD + +D+ G+
Sbjct: 132 -NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187
Score = 55.9 bits (135), Expect = 9e-09
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 22/127 (17%)
Query: 90 LFRAARYGSAKELKTFIENSKL--DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L AA +K ++NS D++ R +G T LH
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT----- 206
Query: 148 LGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
++N + A+ + G + L +G V+
Sbjct: 207 --SMYNEILILGAKLHPTLKLEEITNRK-------------GLTPLALAASSGKIGVLAY 251
Query: 208 LLKSGAD 214
+L+
Sbjct: 252 ILQREIH 258
Score = 49.0 bits (117), Expect = 2e-06
Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 38/150 (25%)
Query: 90 LFRAARYGSAKELKTFIEN-------------SKLDVNMRHPLGWTPLHVAAINGKVDNV 136
L A + + +EN K G PL +AA ++ V
Sbjct: 105 LHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164
Query: 137 RVLLEAG---ANPNLGDLF-NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSA 192
+ LL+ A+ + D NTV E N + +N++L
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL----------- 213
Query: 193 LHYGVVAGNTEVVELLLKSGADPTVKDNSG 222
+ L + + + G
Sbjct: 214 ----------ILGAKLHPTLKLEEITNRKG 233
Score = 46.3 bits (110), Expect = 1e-05
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 86 KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN 145
D T F + Y L + + + + G TPL +AA +GK+ + +L+ +
Sbjct: 199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258
Score = 34.0 bits (78), Expect = 0.11
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 61 TCMYNNLLFASA-CSLALTLLECQSIKDLT-LFRAARYGSAKELKTFIENSKLDVNMRHP 118
T MYN +L A L L E + K LT L AA G L ++ +++
Sbjct: 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR---EIH---- 258
Query: 119 LGWTPLHVAAING 131
H AA +
Sbjct: 259 -EPECRHAAAHHH 270
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 74.0 bits (183), Expect = 1e-15
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 38/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA G ++L + ++N ++VN ++ G T L V G + R LL GANP+L
Sbjct: 9 LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK 66
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D GF+ +H AG + ++ LL
Sbjct: 67 D---------------------------RT---------GFAVIHDAARAGFLDTLQTLL 90
Query: 210 KSGADPTVKDNSGHIP 225
+ AD ++DN G++P
Sbjct: 91 EFQADVNIEDNEGNLP 106
Score = 70.9 bits (175), Expect = 1e-14
Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 38/146 (26%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF 152
+ G+ + + + + +++ G+ +H AA G +D ++ LLE A+ N+ D
Sbjct: 44 VMKLGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED-- 100
Query: 153 NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212
N+ G LH G+ VVE L+K
Sbjct: 101 -------------------------NE---------GNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 213 A-DPTVKDNSGHIPSDYAEDANIKQI 237
A + +++ G D A ++
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 67.0 bits (165), Expect = 2e-13
Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 37/120 (30%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
L AA G ++ + LL+ N N +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQN---------------------------GF 37
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
G +AL + GN E+ LL GA+P +KD +G A A LQ
Sbjct: 38 ---------GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQ 87
Score = 50.1 bits (121), Expect = 2e-07
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA 144
L AA+ G + ++ ++++ +V R+ G T +A + G+ + V ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 76.0 bits (188), Expect = 2e-15
Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 39/144 (27%)
Query: 84 SIKDLT-LFRAARYGSAKELKTFIENSKLDVNMR-HPLGWTPLHVAAINGKVDNVRVLLE 141
+++D L +A + ++ +E +VN + GWTPLH A + D V +LL
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 142 AGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN 201
GA+P L + G + +AG+
Sbjct: 61 HGADPVLRK---------------------------KN---------GATPFLLAAIAGS 84
Query: 202 TEVVELLLKSGADPTVKDNSGHIP 225
++++L L GAD D G
Sbjct: 85 VKLLKLFLSKGADVNECDFYGFTA 108
Score = 75.6 bits (187), Expect = 3e-15
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 37/142 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A + ++ + + D +R G TP +AAI G V +++ L GA+ N
Sbjct: 43 LHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D GF+A V G + ++ L
Sbjct: 102 D---------------------------FY---------GFTAFMEAAVYGKVKALKFLY 125
Query: 210 KSGADPTVKDNSGHIPSDYAED 231
K GA+ ++ + +
Sbjct: 126 KRGANVNLRRKTKEDQERLRKG 147
Score = 72.1 bits (178), Expect = 4e-14
Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 41/153 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDN----VRVLLEAGAN 145
L AA G + LK ++ DVN +G L A ++ + +LL+ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211
Query: 146 PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
N+ G + L V + +V
Sbjct: 212 VNVRG---------------------------ER---------GKTPLILAVEKKHLGLV 235
Query: 206 ELLL-KSGADPTVKDNSGHIPSDYAEDANIKQI 237
+ LL + + D+ G A + +K+I
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268
Score = 69.4 bits (171), Expect = 3e-13
Identities = 29/135 (21%), Positives = 41/135 (30%), Gaps = 40/135 (29%)
Query: 90 LFRAARYGSAKELKTFIE---NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLE-AGAN 145
L A +++ + DVN+R G TPL +A + V+ LLE
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 146 PNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
N D +D G +AL V ++
Sbjct: 246 INDTD---------------------------SD---------GKTALLLAVELKLKKIA 269
Query: 206 ELLLKSGADPTVKDN 220
ELL K GA D
Sbjct: 270 ELLCKRGASTDCGDL 284
Score = 66.7 bits (164), Expect = 3e-12
Identities = 36/150 (24%), Positives = 51/150 (34%), Gaps = 50/150 (33%)
Query: 90 LFRAARYGSAKELKTFIE---------NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLL 140
AA YG K LK + +K D G T L AA G V+ +++LL
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Query: 141 -EAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA 199
E GA+ N D N G +AL + +++
Sbjct: 169 DEMGADVNACD---------------------------NM---------GRNALIHALLS 192
Query: 200 GNT----EVVELLLKSGADPTVKDNSGHIP 225
+ + LLL GAD V+ G P
Sbjct: 193 SDDSDVEAITHLLLDHGADVNVRGERGKTP 222
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 74.0 bits (183), Expect = 2e-15
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 42/154 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG-ANPNL 148
A G + L ++++ D+N + G L AA G +DNV++LLE G + +
Sbjct: 76 YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA-----GNTE 203
+ + G++AL V +
Sbjct: 136 QN---------------------------DF---------GYTALIEAVGLREGNQLYQD 159
Query: 204 VVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237
+V+LL+++GAD ++KDNSG DYA +I
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193
Score = 73.3 bits (181), Expect = 4e-15
Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 38/137 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A + + K++K ++++ V+ G TPL++A N ++ + L++ GA+ NL
Sbjct: 10 LEAANQRDT-KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + S Y G TE++ +L
Sbjct: 69 N---------------------------SI---------SDSPYLYAGAQGRTEILAYML 92
Query: 210 KSGA-DPTVKDNSGHIP 225
K D + G
Sbjct: 93 KHATPDLNKHNRYGGNA 109
Score = 63.6 bits (156), Expect = 8e-12
Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
L A +L + + D +
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVD---------------------------TE 38
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G + L+ V + E+ + L+ GAD ++++ P
Sbjct: 39 ---------GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP 75
Score = 62.1 bits (152), Expect = 3e-11
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 41/126 (32%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDN-----VRVLLEAGA 144
L AA G +K +E+ + D++ ++ G+T L A + + V++L+E GA
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Query: 145 NPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEV 204
+ ++ D N G +A+ Y G TE+
Sbjct: 170 DQSIKD---------------------------NS---------GRTAMDYANQKGYTEI 193
Query: 205 VELLLK 210
++L +
Sbjct: 194 SKILAQ 199
Score = 59.4 bits (145), Expect = 2e-10
Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 39/138 (28%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA-NPNL 148
L A + K I+ D+N+++ + +P A G+ + + +L+ + N
Sbjct: 43 LNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
+ G +AL G+ + V+LL
Sbjct: 102 HN---------------------------RY---------GGNALIPAAEKGHIDNVKLL 125
Query: 209 LKSG-ADPTVKDNSGHIP 225
L+ G D +++ G+
Sbjct: 126 LEDGREDIDFQNDFGYTA 143
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 70.5 bits (174), Expect = 2e-15
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 36/106 (33%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G TPLH+AA NG ++ V++LLEAGA+ N D +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD---------------------------KN 34
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
G + LH G+ EVV+LLL++GAD KD +G P
Sbjct: 35 ---------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Score = 65.5 bits (161), Expect = 2e-13
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 37/124 (29%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AAR G + +K +E DVN + G TPLH+AA NG ++ V++LLEAGA+ N
Sbjct: 6 LHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G + LH G+ EVV+LLL
Sbjct: 65 D---------------------------KN---------GRTPLHLAARNGHLEVVKLLL 88
Query: 210 KSGA 213
++GA
Sbjct: 89 EAGA 92
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 73.2 bits (181), Expect = 3e-15
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 37/136 (27%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A G + +EN + + G T L A N ++ LL G+N N
Sbjct: 39 LMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D G + L + ++ G +E+ LL
Sbjct: 98 D---------------------------FS---------GKTPLMWSIIFGYSEMSYFLL 121
Query: 210 KSGADPTVKDNSGHIP 225
+ GA+ ++ G P
Sbjct: 122 EHGANVNDRNLEGETP 137
Score = 73.2 bits (181), Expect = 3e-15
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 37/148 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A + + + +VN + G TPL + I G + LLE GAN N
Sbjct: 72 LIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR 130
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ + G + L G +E+V+ LL
Sbjct: 131 N---------------------------LE---------GETPLIVASKYGRSEIVKKLL 154
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQI 237
+ GAD + +D +G A +++
Sbjct: 155 ELGADISARDLTGLTAEASARIFGRQEV 182
Score = 70.5 bits (174), Expect = 3e-14
Identities = 25/148 (16%), Positives = 40/148 (27%), Gaps = 43/148 (29%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
+N N R TPL VA + G + + L+E
Sbjct: 12 EKIKDEKSI-------NQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D + G +AL + V + E LL
Sbjct: 65 D---------------------------IE---------GSTALIWAVKNNRLGIAEKLL 88
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQI 237
G++ KD SG P ++ ++
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEM 116
Score = 56.2 bits (137), Expect = 2e-09
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 37/120 (30%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L + +G ++ +E+ +VN R+ G TPL VA+ G+ + V+ LLE GA+ +
Sbjct: 105 LMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D G +A + G EV+++
Sbjct: 164 D---------------------------LT---------GLTAEASARIFGRQEVIKIFT 187
Score = 44.3 bits (106), Expect = 3e-05
Identities = 13/118 (11%), Positives = 24/118 (20%), Gaps = 42/118 (35%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
G + N+ L D +
Sbjct: 8 GEIVEKIKDEKSINQNLDFLRNYR-------------------------------DSY-- 34
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237
+ L + G ++ L+++ KD G +A N I
Sbjct: 35 ---------NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGI 83
Score = 39.7 bits (94), Expect = 0.001
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA 144
L A++YG ++ +K +E D++ R G T A I G+ + +++ E
Sbjct: 138 LIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 74.4 bits (183), Expect = 5e-15
Identities = 26/155 (16%), Positives = 42/155 (27%), Gaps = 35/155 (22%)
Query: 89 TLFRAARYGSAKELKTFIE-------NSKLDVNMRHPLGWTPLHVAAIN---GKVDNVRV 138
LF G +EL +E G T L A +N G +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 139 LLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVV 198
LL+ + T + G SALH +
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFYQ-------------------------GHSALHIAIE 99
Query: 199 AGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233
+ + V+LL+++GAD ++
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY 134
Score = 66.4 bits (162), Expect = 2e-12
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 26/117 (22%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
G + LH+A + V++L+E GA+ +L
Sbjct: 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA--------------------- 120
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG---ADPTVKDNSGHIP 225
F + G L +VV LL++ A D+ G+
Sbjct: 121 --CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175
Score = 64.4 bits (157), Expect = 1e-11
Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 31/157 (19%)
Query: 95 RYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAG---ANPNLGDL 151
G+ L+ + G PL +AA + D V LLE A+ D
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170
Query: 152 F-NTV-HRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
NTV H +P SAL + G ++ L
Sbjct: 171 LGNTVLHALVMIADNSP----------------------ENSALVIHMYDGLLQMGARLC 208
Query: 210 KSGADPTVKDNSG----HIPSDYAEDANIKQILQKYA 242
+ + ++ G + + + + ILQ+
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245
Score = 53.3 bits (128), Expect = 6e-08
Identities = 18/152 (11%), Positives = 32/152 (21%), Gaps = 54/152 (35%)
Query: 90 LFRAARYGSAKELKTFIENSKL--DVNMRHPLGWTPLH----------------VAAING 131
L AA + +EN + LG T LH + +G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199
Query: 132 KVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFS 191
+ L + + + G +
Sbjct: 200 LLQMGARLCPTVQLEEISN---------------------------HQ---------GLT 223
Query: 192 ALHYGVVAGNTEVVELLLKSGADPTVKDNSGH 223
L G E+ +L+ + H
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 49.8 bits (119), Expect = 8e-07
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 76 ALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDN 135
AL ++ S ++ L G + + + + G TPL +AA GK++
Sbjct: 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ-LEEISNHQGLTPLKLAAKEGKIEI 236
Query: 136 VRVLLEAGANPN 147
R +L+ +
Sbjct: 237 FRHILQREFSGA 248
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 73.7 bits (181), Expect = 8e-15
Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 41/147 (27%)
Query: 89 TLFRAARYGSAKELKTFIE---NSKLDVNM----RHPLGWTPLHVAAIN---GKVDNVRV 138
LF GS L+ + K + G T L A +N G+ D + +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 139 LLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMT---FLGFSALHY 195
LL+ + +N + G +ALH
Sbjct: 68 LLDIAEKT----------------------------GNMREFINSPFRDVYYRGQTALHI 99
Query: 196 GVVAGNTEVVELLLKSGADPTVKDNSG 222
+ VELL++ GAD +
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGR 126
Score = 67.5 bits (165), Expect = 1e-12
Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 25/130 (19%)
Query: 99 AKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRT 158
A++ E + G T LH+A V +L+E GA+ +
Sbjct: 72 AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH----------- 120
Query: 159 AAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG---ADP 215
+ F F G L +V L ++G AD
Sbjct: 121 --AQARGRFFQPKDEGGYFYF---------GELPLSLAACTNQPHIVHYLTENGHKQADL 169
Query: 216 TVKDNSGHIP 225
+D+ G+
Sbjct: 170 RRQDSRGNTV 179
Score = 65.6 bits (160), Expect = 5e-12
Identities = 28/163 (17%), Positives = 46/163 (28%), Gaps = 29/163 (17%)
Query: 90 LFRAARYGSAKELKTFIEN-------------SKLDVNMRHPLGWTPLHVAAINGKVDNV 136
L A ++ +E D G PL +AA + V
Sbjct: 97 LHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156
Query: 137 RVLLEAG---ANPNLGDLF-NTV-HRTAA---------EKKMNPFEVLLKREDEFNDVLN 182
L E G A+ D NTV H A + +++LL + + N
Sbjct: 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216
Query: 183 PNMTF--LGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGH 223
G S L G + + +++ + H
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 74.3 bits (182), Expect = 1e-14
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 18/157 (11%)
Query: 90 LFRAARYGSAKELKTF---IENSKLDVNMRHPLGWTPLHVAAINGKVDN----------- 135
L +A + + + TF ++ + + + T LH I +
Sbjct: 168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227
Query: 136 -VRVLLEAGANPNLGDLF--NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSA 192
+ +++ P + ++ + L + ++LN G +
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN-AQDSNGDTC 286
Query: 193 LHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229
L+ GN +V+ LL GADP + + SG P D+
Sbjct: 287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 67.7 bits (165), Expect = 2e-12
Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 24/169 (14%)
Query: 100 KELKTFIENSKLDVNMRH-PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD------LF 152
+E+ N++L++N+ G TPLH ++ V+ L++ G+N GD L
Sbjct: 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLV 169
Query: 153 NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTE--------- 203
V FE LL + + + LH+ ++
Sbjct: 170 KAVKSVNNYDSGT-FEALLDYLYPCLILEDSM----NRTILHHIIITSGMTGCSAAAKYY 224
Query: 204 ---VVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQ 249
++ ++K P + ++ K + + + +
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273
Score = 30.4 bits (68), Expect = 1.8
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 93 AARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAA 128
AAR G+ + ++ D + + G P+ A
Sbjct: 290 AARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA 324
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 68.5 bits (168), Expect = 1e-13
Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 44/145 (30%)
Query: 89 TLFRAARYGSAKELKTFIEN--SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146
T+ AA G+ ++ E + ++ + + L + L+ GA+
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68
Query: 147 NLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGV------VAG 200
+ G + + G
Sbjct: 69 KSRT---------------------------KE---------GTTLFFPLFQGGGNDITG 92
Query: 201 NTEVVELLLKSGADPTVKDNSGHIP 225
TE+ ++ L+ GAD T I
Sbjct: 93 TTELCKIFLEKGADITALYKPYKIV 117
Score = 67.4 bits (165), Expect = 4e-13
Identities = 16/145 (11%), Positives = 36/145 (24%), Gaps = 50/145 (34%)
Query: 90 LFRAARYGSAKELKTFIENSKL------DVNMRHPLGWTPLHVAAINGKVDNVR------ 137
F + G ++ E K+ D+ + + N VD
Sbjct: 79 FFPLFQGGG-NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137
Query: 138 -VLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYG 196
+ ++G + D + G +AL +
Sbjct: 138 LIFSQSGLQLLIKDKW------------------------------------GLTALEFV 161
Query: 197 VVAGNTEVVELLLKSGADPTVKDNS 221
++++ +K+NS
Sbjct: 162 KRCQKPIALKMMEDYIKKYNLKENS 186
Score = 61.6 bits (150), Expect = 3e-11
Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 33/106 (31%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
+ + AA+ G ++ L E G L +
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSN------------------------- 40
Query: 180 VLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIP 225
+ + L ++ L+ GAD + G
Sbjct: 41 --------ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTL 78
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 71.1 bits (175), Expect = 2e-13
Identities = 31/163 (19%), Positives = 47/163 (28%), Gaps = 55/163 (33%)
Query: 90 LFRAARYGSAKELKTFIENSKL------DVNMRHPL--------GWTPLHVAAINGKVDN 135
L A + + ++KL V+ G T LH AA +
Sbjct: 239 LMIVAHNEG----RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294
Query: 136 VRVLL-EAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALH 194
V+ L+ E G+N + D D G + +
Sbjct: 295 VKYLVGEKGSNKDKQD---------------------------ED---------GKTPIM 318
Query: 195 YGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQI 237
G EVV L++ GA D + H A+ N I
Sbjct: 319 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 361
Score = 69.6 bits (171), Expect = 6e-13
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 90 LFRAARYGSAKELKTFIENSKL--DVNMRHPLGWTPLHVAAINGKVDNVRV---LLEAGA 144
L +AA + + ++KL D+ G T L + A N D V L+E GA
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262
Query: 145 NPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEV 204
+ +K G +ALHY N +
Sbjct: 263 KVDYDGAARK-----DSEKYK-----------------------GRTALHYAAQVSNMPI 294
Query: 205 VELLL-KSGADPTVKDNSGHIP 225
V+ L+ + G++ +D G P
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTP 316
Score = 68.4 bits (168), Expect = 1e-12
Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 46/146 (31%)
Query: 90 LFRAARYGSAKELKTFIENSKL-------DVNMRHPLGWTPLHVAAINGKVDNVRVLLEA 142
L A SA++ + I + DVN TPL +A + + V L++A
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA 188
Query: 143 GANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNT 202
GA+P + + SALH +
Sbjct: 189 GADPTIYN---------------------------KS---------ERSALHQAAANRDF 212
Query: 203 EVVELLL---KSGADPTVKDNSGHIP 225
++ +L K D D +G
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRNGMTA 238
Score = 68.1 bits (167), Expect = 2e-12
Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 36/125 (28%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+ + +K + + + + G TP+ +AA G+++ V L++ GA+
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D +A + +V++
Sbjct: 343 D---------------------------AT---------DHTARQLAQANNHHNIVDIFD 366
Query: 210 KSGAD 214
+ +
Sbjct: 367 RCRPE 371
Score = 63.4 bits (155), Expect = 6e-11
Identities = 22/145 (15%), Positives = 36/145 (24%), Gaps = 25/145 (17%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A+ G K + +++ P NG P
Sbjct: 41 LLEASYDGYIKRQRNELQHY----------SLYPNPQGYGNGNDFLGDFNHTNLQIPTEP 90
Query: 150 DLF-NTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
+ T A E + + D + + LH+ + E E L
Sbjct: 91 EPESPIKLHTEAAGSYAITEPITRESVNIIDPRH------NRTVLHWIASNSSAEKSEDL 144
Query: 209 LKS--------GADPTVKDNSGHIP 225
+ GAD D + P
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTP 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 6e-13
Identities = 74/552 (13%), Positives = 151/552 (27%), Gaps = 171/552 (30%)
Query: 95 RYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNT 154
+Y L F + + + + D + +L + + + +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQ--------------DMPKSIL---SKEEIDHIIMS 57
Query: 155 VHRTAAEKKMNPFEVLLKREDE-----FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ ++ F LL +++E +VL N FL S + ++ +
Sbjct: 58 KDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKT--EQRQPSMMTRMY 112
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDR 269
D DN Q+ KY ++ R + + R+ LE R
Sbjct: 113 IEQRDRLYNDN---------------QVFAKY-----NVSRLQPYLKLRQALLELR---- 148
Query: 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK--E 327
V + G G GKT +A + K
Sbjct: 149 -------------------------PAKNVLID-GVLGSGKTWVALDVC----LSYKVQC 178
Query: 328 AFIR----LDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEV---- 379
L++ V +++ L + T R N + +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 380 -----DKAHPDVLTVL--------LQLFDEGRLTDGKGKTIECKDAIFVMTSN------L 420
K + + L VL F+ + CK I + T L
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFN-----------LSCK--ILLTTRFKQVTDFL 281
Query: 421 ASNEIAQHALQLRKEG---EE----FSK----RTPSISKS--QGSNLDVT-ISRHFKDHV 466
++ +L +E K R + + + ++ I+ +D +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 467 VQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKH-NI-----N 520
+H D+ L I E S + L R++ F +I +
Sbjct: 342 ATWDNWKHVNCDK-LTTIIES------SLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLS 393
Query: 521 IVW----DIDVETILA----------DGYDVHYGARSIKHEVERQVVSQLAAAHEKSVIG 566
++W DV ++ + SI + + + A H +S++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALH-RSIVD 451
Query: 567 KGSFVRLYVQWS 578
+ + +
Sbjct: 452 HYNIPKTFDSDD 463
Score = 62.9 bits (152), Expect = 2e-10
Identities = 77/549 (14%), Positives = 146/549 (26%), Gaps = 160/549 (29%)
Query: 6 VQRRQLVLCILSNYFKQKPYKR-------GFQSSKL------FYTTQSTQAD------FK 46
V R Q L + + +P K G + + Y Q K
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 47 SCLSVFPKIRQSNNTCMYNNLLFASACSLALTL-LECQSIKD--LTLFRAARYGSAKELK 103
+C S + + + S + + L SI+ L ++ Y
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------- 243
Query: 104 TFIENSKL---DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAA 160
EN L +V A N ++LL + D + T
Sbjct: 244 ---ENCLLVLLNV-------QNAKAWNAFNLSC---KILLTT-RFKQVTDFLSAATTT-- 287
Query: 161 EKKMNPFEVLLKREDE----FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPT 216
++ + L DE L+ L V+ N + ++ +
Sbjct: 288 HISLDHHSMTLT-PDEVKSLLLKYLD-----CRPQDLPREVLTTNPRRLSII---AE--S 336
Query: 217 VKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESA 276
++D D + N ++ L + AE R+ + V SA
Sbjct: 337 IRDGLATW--DNWKHVNCDKLTTIIESSLNVL---EPAEYRKMF------DRLSVFPPSA 385
Query: 277 INIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSE 336
+I + + W D V + + +L K + + KE+ I +
Sbjct: 386 -HIPTILLSLI---WFDVIKSDVMVVV-------NKLHKYSL--VEKQPKESTISI---- 428
Query: 337 YQEKHEVAKLIGAPPGYLGHDDGGQLTKRLK-KCPNAVVLFDEVDKAHPDVLTVLLQLFD 395
+ LK K N L H ++ ++
Sbjct: 429 -------------------PS----IYLELKVKLENEYAL-------H----RSIVDHYN 454
Query: 396 EGRLTDGKGKTIECKDA-IFVMTSNLASNEIAQHALQLRKEGE--EFSK----------- 441
+ D D + + I H + F
Sbjct: 455 IPKTFDSDDLIPPYLDQYFY--------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 442 --RTPSISKSQGSNLDVTIS-RHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498
+ + GS L+ + +K + I + + +N I+ FLP K E
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPKYER---LVNAILDFLP--KIEE 557
Query: 499 HTLVCRELN 507
+ + + +
Sbjct: 558 NLICSKYTD 566
Score = 56.0 bits (134), Expect = 3e-08
Identities = 58/367 (15%), Positives = 113/367 (30%), Gaps = 96/367 (26%)
Query: 223 HIPSDYAE-DANIKQILQKYAEKY-ADLQREKEAEERRKYPLEQRLKDRIVGQESAIN-- 278
H+ + E K IL + + + + K+ ++ K L + D I+ + A++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 279 --IISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR-LDMS 335
+ + ++E V F+ L F + K E +
Sbjct: 65 LRLFWTLLSKQEEM--------VQKFVEEV------LRINYKFLMSPIKTEQRQPSMMTR 110
Query: 336 EYQEKHEVAKLIGAPPGYLGHDDGGQLTK----RLKKCPNAVVLFDEVDKAHPDVLTVLL 391
Y E+ + ++D K RL+ + ++ +A LL
Sbjct: 111 MYIEQRDRL-----------YNDNQVFAKYNVSRLQP-------YLKLRQA-------LL 145
Query: 392 QLFDEGRLT----DGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEF-----SKR 442
+L + G GKT +A + + +Q + + + F +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTW------------VALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 443 TPSISKSQGSNLDVTISRHFK---DHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELH 499
+P L I ++ DH L+ H + + ++ P+ L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA----ELRRLLKSKPYENC-L- 247
Query: 500 TLVCRELNFWAKKALDKHNIN-----IVWDIDVETILADGYDVHYGARSIKHEV----ER 550
LV N KA + N++ V L+ H S+ H
Sbjct: 248 -LVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLTPD 301
Query: 551 QVVSQLA 557
+V S L
Sbjct: 302 EVKSLLL 308
Score = 52.2 bits (124), Expect = 5e-07
Identities = 84/584 (14%), Positives = 165/584 (28%), Gaps = 135/584 (23%)
Query: 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVL 139
+C+ ++D+ ++ S +E+ I SK V+ L WT L + + V+
Sbjct: 33 FDCKDVQDMP--KSIL--SKEEID-HIIMSKDAVSGTLRLFWTLLS----KQE-EMVQKF 82
Query: 140 LEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDV------------------- 180
+E N L + + + M + +R+ +ND
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 181 ----LNPNMTFLGFSALHYGVV-AGNTEVVELLLKSGADPTVKD---------NSGHIPS 226
L P + GV+ +G T V + V+ N + S
Sbjct: 143 ALLELRPA----KNVLID-GVLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNS 194
Query: 227 DYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAIN--IISAAI 284
++++L + + + R + ++ L+ R++ + N ++ +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNV 253
Query: 285 KRKENGW------------TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR- 331
+ + W T V FL ++ L + K ++
Sbjct: 254 QNAKA-WNAFNLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 332 LDMSEYQEKHEVAK-------LIGA----PPG---YLGHDDGGQLTKRLKKC-----PN- 371
LD EV +I H + +LT ++ P
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 372 ------AVVLFDEVDKAHPDVLTVL------------LQLFDEGRLT--DGKGKTIECKD 411
+ +F +L+++ + + L K TI
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 412 AIFVMTSNLASNEIAQHA--LQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQ- 468
+ L NE A H + + F LD H H+
Sbjct: 431 IYLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFYSHIGHHLKNI 484
Query: 469 ------PILKRHFRRDEFLGR-INEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINI 521
+ + F FL + I S S L+TL ++L F+ D
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL--QQLKFYKPYICDNDPKYE 542
Query: 522 VWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAHEKSVI 565
+ L I + ++ ++A E I
Sbjct: 543 RLVNAILDFL-----PKIEENLICSK-YTDLL-RIALMAEDEAI 579
Score = 42.5 bits (99), Expect = 4e-04
Identities = 70/457 (15%), Positives = 133/457 (29%), Gaps = 148/457 (32%)
Query: 16 LSNYFKQKPYKRGF------QSSKLFYTTQSTQA-DFKSCLSVFPKI----RQSNNTCMY 64
L K KPY+ Q++K + A + C KI R T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAW------NAFNLS-C-----KILLTTRFKQVT--- 278
Query: 65 NNLLFASACSLAL-----TLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPL 119
+ L A+ ++L TL + +L K L ++ +V +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEV---KSLL-------LKYLDCRPQDLPREVLTTN-- 326
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
P ++ I + + D + V +K E L +
Sbjct: 327 ---PRRLSIIAESIRD---------GLATWDNWKHV---NCDKLTTIIESSL-------N 364
Query: 180 VLNPNMT---FLGFSALHYGVVAGN--TEVVELLLKSGADPTVKDNSGHIPSDYAEDANI 234
VL P F S + T ++ L+ D D +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIW---FDVIKSD-----VMVVVNKLHK 413
Query: 235 KQILQKYAEKYA----DLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENG 290
+++K ++ + E + + +Y L + + D I + +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY------------NIPKTFDS 461
Query: 291 WTDDDHPL---VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347
L + +G + H L E+ E+ + +++
Sbjct: 462 DDLIPPYLDQYFYSHIG---------------H-H---------LKNIEHPERMTLFRMV 496
Query: 348 GAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQL-FDEGRLTDGKGKT 406
+L D L ++++ A A +L L QL F + + D K
Sbjct: 497 -----FL---DFRFLEQKIRHDSTAW-------NASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 407 IECKDAI--FVMT--SNLASNE---IAQHALQLRKEG 436
+AI F+ NL ++ + + AL E
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 62.3 bits (151), Expect = 2e-10
Identities = 18/139 (12%), Positives = 33/139 (23%), Gaps = 36/139 (25%)
Query: 87 DLTLFRAARYGSAKELKT--FIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGA 144
++ F AA G + L T + S V + + +AA NG + + L E
Sbjct: 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 152
Query: 145 NPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEV 204
+ + + A G+ V
Sbjct: 153 TEIMAMIQAE----------------------------------NYHAFRLAAENGHLHV 178
Query: 205 VELLLKSGADPTVKDNSGH 223
+ L +
Sbjct: 179 LNRLCELAPTEATAMIQAE 197
Score = 49.2 bits (117), Expect = 2e-06
Identities = 21/156 (13%), Positives = 41/156 (26%), Gaps = 20/156 (12%)
Query: 90 LFRAARYGSAKELKTFIEN-SKLDVNMRHPLGWTPLHVAAI-NGKVDNVRVLLEAGANPN 147
AA G L E M + AA+ G + + LL+
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226
Query: 148 LGDLFNT----------VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGV 197
++ + R K L D D++ + GF L +
Sbjct: 227 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286
Query: 198 VAGNTEVVELL--------LKSGADPTVKDNSGHIP 225
+ +++ + +K+ A +
Sbjct: 287 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322
Score = 39.5 bits (92), Expect = 0.002
Identities = 19/146 (13%), Positives = 37/146 (25%), Gaps = 9/146 (6%)
Query: 79 LLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRV 138
LL+C + YG + FI + H ++ +G D V
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEK-YVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTK 272
Query: 139 LLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVV 198
L +L + + + + + L +
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD----ANELLRLALR 328
Query: 199 AGNTEVVELLLKSGADPTVKDNSGHI 224
GN LLL + + + +
Sbjct: 329 LGNQGACALLLSIPSVLALTKANNYY 354
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 59.6 bits (144), Expect = 6e-10
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 42/134 (31%)
Query: 116 RHPLGWTPLHVAAINGKVDNVRV---LLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLK 172
H T LH+A + ++ + L++ N +
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG--------------------- 203
Query: 173 REDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDA 232
G +ALHY + N E ++LLL+ A + + SG P D A+
Sbjct: 204 ---------------KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248
Query: 233 N---IKQILQKYAE 243
+++L +
Sbjct: 249 KHEHCEELLTQALS 262
Score = 46.5 bits (110), Expect = 1e-05
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 36/100 (36%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
+++ + G T LH + + +++LL A+ + +
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-------------------- 236
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKS 211
G + L + ELL ++
Sbjct: 237 ----------------SGETPLDIAKRLKHEHCEELLTQA 260
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 57.1 bits (137), Expect = 7e-09
Identities = 34/152 (22%), Positives = 48/152 (31%), Gaps = 38/152 (25%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPL--GWTPLHVAAINGKVDNVRVLLEAGANPN 147
LFRA+ + + DVN + TPL A + LL+ GAN N
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262
Query: 148 LGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVEL 207
D G LH+ + G+T + L
Sbjct: 263 QADSA------------------------------------GRGPLHHATILGHTGLACL 286
Query: 208 LLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
LK GAD +D+ G P A + I+
Sbjct: 287 FLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Score = 41.3 bits (96), Expect = 6e-04
Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 37/141 (26%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L +A S + ++N +VN G PLH A I G + L+ GA+
Sbjct: 239 LIQATAANSLLACEFLLQNGA-NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D G L + N ++V LL
Sbjct: 298 DS------------------------------------EGRDPLTIAMETANADIVTLLR 321
Query: 210 KSGADPTVKDNSGHIPSDYAE 230
+ Y +
Sbjct: 322 LAKMREAEAAQGQAGDETYLD 342
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 56.2 bits (135), Expect = 8e-09
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 39/121 (32%)
Query: 120 GWTPLHVAAINGKVDNVRV---LLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDE 176
LH+A ++ + +++ G + +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-------------------------- 223
Query: 177 FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236
G +ALHY + + ++LLLK A + +G D A + K+
Sbjct: 224 ----------ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 273
Query: 237 I 237
Sbjct: 274 C 274
Score = 47.7 bits (113), Expect = 6e-06
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN-TVHRTAAEKKMNPFEVL 170
++ + G T LH AA+ + D +++LL+ A + T A +K E L
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277
Query: 171 LK--REDEFNDVLN 182
L+ + F L+
Sbjct: 278 LEQAQAGTFAFPLH 291
Score = 35.0 bits (80), Expect = 0.061
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 168 EVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN---TEVVELLLKSGADPTVKDNSGHI 224
E +D + P+ LH V N +V+ ++++G K G+
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228
Query: 225 PSDYAEDAN 233
YA N
Sbjct: 229 ALHYAALYN 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 104/641 (16%), Positives = 170/641 (26%), Gaps = 278/641 (43%)
Query: 80 LECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVL 139
++ S + LTL +GS +E+ L V P T A
Sbjct: 1 MDAYSTRPLTL----SHGS-------LEHV-LLV----P---TASFFIASQ--------- 32
Query: 140 LEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSA--LHYGV 197
L + FN + E +DE FLG+ + +
Sbjct: 33 --------LQEQFNKILPEPTEG--------FAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 198 VAGNTEVVELLLKSGADPTVKDNSGH------IPSDYAEDANIKQILQKYAEKYADLQR- 250
V +V+ L L + ++ N H + + K++++ Y +R
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 251 --------------EKEA----------------EERRK----Y-PLEQRLKDRIVGQ-E 274
E A EE R Y L L
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 275 SAINIISAAIKRKENG-----W--TDDDHPLVFLFLGSS-----GIGKTELAKQLAFYIH 322
I A K G W + P +L S IG QLA Y+
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-DYLLSIPISCPLIGVI----QLAHYV- 250
Query: 323 RDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVL-----FD 377
AKL+G PG L G T + AV + ++
Sbjct: 251 -------------------VTAKLLGFTPGELRSYLKG-ATGHSQGLVTAVAIAETDSWE 290
Query: 378 EVDKAHPDVLTVLL-------QLF----------------DEGR------LTDGKGKTIE 408
+ +TVL + + +EG +++ + ++
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 409 CKDAIFVMTSNLASNE---IA-----QH-------------ALQLRKE----GEE----- 438
D + S+L + + I+ ++ L LRK G +
Sbjct: 351 --DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 439 FSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSEL 498
FS+R S FL + PF
Sbjct: 409 FSERKLKFSN------------------------------RFL-PV-----ASPF----- 427
Query: 499 HT-------------LVCRELNFWAKKALDKHNINI-VWDIDVETILADGYDVHYGARSI 544
H+ LV ++F AK I I V+D DG D+ R +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKD------IQIPVYDT------FDGSDL----RVL 471
Query: 545 KHEVERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVSEDS 585
+ ++V + +RL V+W +
Sbjct: 472 SGSISERIVDCI--------------IRLPVKWETTTQFKA 498
Score = 41.6 bits (97), Expect = 9e-04
Identities = 46/275 (16%), Positives = 90/275 (32%), Gaps = 103/275 (37%)
Query: 83 QSI---KDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAIN--------- 130
Q DL +A+++ + ++ D + + G++ L + N
Sbjct: 1627 QEQGMGMDL----YKTSKAAQDV--W---NRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 131 ---------------------GKVDNVRVLLEAGAN--------PNLGDLFNTVHRT--- 158
GK+ ++ E + G L T T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-GLLSATQF-TQPA 1735
Query: 159 --AAEKKMNPFEVLLKREDEFNDVLNPNMTF----LG-FSALHYGVVAG--NTE-VVELL 208
E FE L + + ++ + TF LG ++AL +A + E +VE++
Sbjct: 1736 LTLME--KAAFEDL---KSKG--LIPADATFAGHSLGEYAALAS--LADVMSIESLVEVV 1786
Query: 209 LKSG-----ADPTVKDNSGHIPSDYAEDA-NIKQILQKYAEKYADLQR-EKEAEERRKYP 261
G A P +D G S+Y A N ++ +++ LQ + +R +
Sbjct: 1787 FYRGMTMQVAVP--RDELGR--SNYGMIAINPGRVAASFSQ--EALQYVVERVGKRTGWL 1840
Query: 262 LE---------QRLKDRIV--GQESAINIISAAIK 285
+E Q V G A++ ++ +
Sbjct: 1841 VEIVNYNVENQQ-----YVAAGDLRALDTVTNVLN 1870
Score = 38.1 bits (88), Expect = 0.010
Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 65/198 (32%)
Query: 29 FQSSK-LFYTTQSTQ-ADFKSCLSVFPKIRQSNNTCMYNNLLFA-------SA-CSLALT 78
F+S K L TQ TQ A + F ++ + FA +A SLA
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI--PADATFAGHSLGEYAALASLADV 1776
Query: 79 LLECQSIKDL--TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAIN-GKVDN 135
+ SI+ L +F R G ++ + R LG + + AIN G+V
Sbjct: 1777 M----SIESLVEVVF--YR-GMT--MQVAVP--------RDELGRSNYGMIAINPGRV-- 1817
Query: 136 VRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDE---FNDVLNPNMTFLGFSA 192
A+ + L V R ++ E +N N
Sbjct: 1818 -------AASFSQEALQYVVERVGKRTG----WLV-----EIVNYN---VENQQ------ 1852
Query: 193 LHYGVVAGNTEVVELLLK 210
Y V AG+ ++ +
Sbjct: 1853 --Y-VAAGDLRALDTVTN 1867
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 49.1 bits (117), Expect = 3e-06
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 7/138 (5%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN-------IKQILQKY 241
G +ALHY + + ++LLLK A + +G D A + ++Q
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 266
Query: 242 AEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFL 301
+ + S+ + +++ + + L
Sbjct: 267 FAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLSNKEMRIL 326
Query: 302 FLGSSGIGKTELAKQLAF 319
LG GKT + +L
Sbjct: 327 MLGLDAAGKTTILYKLKL 344
Score = 42.2 bits (99), Expect = 5e-04
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGD 150
++ + G T LH AA+ + D +++LL+ A +
Sbjct: 199 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN 237
Score = 34.9 bits (80), Expect = 0.077
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 170 LLKREDEFNDVLN-PNMTFLGFSALHYGVVA---GNTEVVELLLKSGADPTVKDNSGHIP 225
+F L P+ LH V + +V+ ++++G K G+
Sbjct: 151 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210
Query: 226 SDYAEDAN 233
YA N
Sbjct: 211 LHYAALYN 218
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 47.1 bits (111), Expect = 9e-06
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 10/137 (7%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
R+ +E + + + H LG G GKT ++L
Sbjct: 17 KRLPHREQQLQQLDILLGNWLRN--PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA 74
Query: 328 AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGG-------QLTKRLKKCPNAVVL-FDEV 379
F+ ++ Y+ + I G L + L++ + L D+
Sbjct: 75 RFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDA 134
Query: 380 DKAHPDVLTVLLQLFDE 396
PD+L+ ++L E
Sbjct: 135 FNLAPDILSTFIRLGQE 151
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 46.6 bits (111), Expect = 2e-05
Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 15/146 (10%)
Query: 235 KQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDD 294
++ L E L+ E + + ++L D+++GQE A+ +I A +K +
Sbjct: 9 REALAPR-EYGESLELGIEFTTTEEIEVPEKLIDQVIGQEHAVEVIKTAANQKRH----- 62
Query: 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYL 354
V L +G G GK+ L + +A + + + E I P
Sbjct: 63 ----VLL-IGEPGTGKSMLGQAMA----ELLPTETLEDILVFPNPEDENMPRIKTVPACQ 113
Query: 355 GHDDGGQLTKRLKKCPNAVVLFDEVD 380
G + ++ K + +
Sbjct: 114 GRRIVEKYREKAKSQESVKSSNMRLK 139
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 44.0 bits (104), Expect = 1e-04
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 40/173 (23%)
Query: 262 LEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYI 321
L L+ + + AI + A E+ VFL LG GI K+ +A++L
Sbjct: 16 LSSSLEKGLYERSHAIRLCLLAALSGES---------VFL-LGPPGIAKSLIARRLK--- 62
Query: 322 HRDKKEAFIRLDMSEYQ--------EKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCP--N 371
AF EY E + G P D G+ +
Sbjct: 63 -----FAFQNARAFEYLMTRFSTPEE------VFG-PLSIQALKDEGRYERLTSGYLPEA 110
Query: 372 AVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNE 424
+V DE+ KA P +L LL +E + +G + + V ASNE
Sbjct: 111 EIVFLDEIWKAGPAILNTLLTAINERQFRNG-AHVEKIPMRLLVA----ASNE 158
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 41.7 bits (97), Expect = 5e-04
Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 19/161 (11%)
Query: 242 AEKYADLQREKEAEERRKYPLEQRLKDRIVGQESA-------INIISAAIKRKENGWTDD 294
A DL+ E E ++ E L ++G + ++ R++ G +
Sbjct: 7 APTSIDLRAEYEGSGAKEVLEE--LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE 64
Query: 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRD---KKEAFIRLDMSE------YQEKHEVAK 345
L F G+ G GKT +A ++A +HR +K + + + + +
Sbjct: 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKE 124
Query: 346 LIG-APPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD 385
++ A G L D+ L + + + + + +
Sbjct: 125 VLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 165
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 40.6 bits (95), Expect = 0.001
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 27/143 (18%)
Query: 259 KY-PLEQRLKDRIVGQESAINIISAAIK---------RKENGWTDDDHPLVFLFLGSSGI 308
KY P L+ + G + ++ + + K G + G GI
Sbjct: 32 KYAP--TNLQQ-VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI 88
Query: 309 GKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIG------APPGYLGHDDGGQL 362
GKT A +A ++ + + S+ + K + + + GY H++ Q
Sbjct: 89 GKTTAAHLVA----QELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQN 144
Query: 363 TKRLKKCPNAVVLFDEVDKAHPD 385
++ DEVD
Sbjct: 145 LNGKHFV----IIMDEVDGMSGG 163
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 38.3 bits (89), Expect = 0.005
Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 35/227 (15%)
Query: 222 GHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYP--------LEQRLKDRIVGQ 273
G+ P + Y E ++ +K+A + L D V
Sbjct: 74 GYQPILAMNEGYADV---SYLETKELVEAQKQAAISERIQLVSLPKSYRHIHLSDIDVNN 130
Query: 274 ESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLD 333
S + SA + E + + L G GIGK+ L +A + K + L
Sbjct: 131 ASRMEAFSAILDFVEQYPSAEQKGL--YLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188
Query: 334 MSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEV--DKAHPDVLTVLL 391
+ + A + + + +K P V++ D++ ++A V +L
Sbjct: 189 FPSF-----AIDVKNA----ISNGSVKEEIDAVKNVP--VLILDDIGAEQATSWVRDEVL 237
Query: 392 QLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEE 438
Q+ + R+ + T TSN + ++ + ++ E
Sbjct: 238 QVILQYRMLEEL-PTF--------FTSNYSFADLERKWATIKGSDET 275
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 35.6 bits (83), Expect = 0.035
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 266 LKDRIVGQESAINIISAAI----KRKENGWTDDDHPLV---FLFLGSSGIGKTELAKQLA 318
L D ++GQE A +++ A+ KR NG T + L L +G +G GKT LA+ LA
Sbjct: 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 34.5 bits (80), Expect = 0.061
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 259 KY-PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQL 317
KY P + L + +VGQ+ I + ++RK H LF G G GKT A L
Sbjct: 10 KYRP--RTLDE-VVGQDEVIQRLKGYVERKNI-----PH---LLFSGPPGTGKTATAIAL 58
Query: 318 AFYIHRDK-KEAFIRLDMSE 336
A + + ++ FI ++ S+
Sbjct: 59 ARDLFGENWRDNFIEMNASD 78
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 34.3 bits (78), Expect = 0.12
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 15/139 (10%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
D + +E I I++ + P G +G GKT + K + +H+
Sbjct: 20 DELPHREDQIRKIASILAPLYREEK----PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG 75
Query: 328 AF--IRLDMSEYQEKHEVAKLIG-------APPGYLGHDDGGQLTKRLKKC-PNAVVLFD 377
F + ++ + + V + G + +L K ++ V++ D
Sbjct: 76 KFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLD 135
Query: 378 EVDK-AHPDVLTVLLQLFD 395
E+D +L +L
Sbjct: 136 EIDAFVKKYNDDILYKLSR 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.12
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 253 EAEERRKYPLEQRLKDRIVGQESAINI-ISAAIK 285
E + +K L+ LK + +SA + I A ++
Sbjct: 18 EKQALKK--LQASLK--LYADDSAPALAIKATME 47
Score = 33.0 bits (74), Expect = 0.12
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 18/48 (37%)
Query: 549 ERQVVSQLAAAHEKSVIGKGSFVRLYVQWSKEVSEDSAKGGIIKLKVK 596
E+Q + +L + S ++LY ++DSA IK ++
Sbjct: 18 EKQALKKL----QAS-------LKLY-------ADDSAPALAIKATME 47
Score = 33.0 bits (74), Expect = 0.13
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 26/55 (47%)
Query: 81 ECQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVA-AINGKVD 134
E Q++K L S LK + ++S P A AI ++
Sbjct: 18 EKQALKKLQ-------AS---LKLYADDS------------AP---ALAIKATME 47
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 33.8 bits (78), Expect = 0.14
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 30/129 (23%)
Query: 268 DR-IVGQESAINIISAAI-KRKENGWTDDD-----HPLVFLFLGSSGIGKTELAKQLAFY 320
D+ I+GQ A ++ A+ R + P L +G +G+GKTE+A++LA
Sbjct: 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA-- 71
Query: 321 IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAV------- 373
+ FI+++ +++ E GY+G + + A+
Sbjct: 72 --KLANAPFIKVEATKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNG 118
Query: 374 -VLFDEVDK 381
V DE+DK
Sbjct: 119 IVFIDEIDK 127
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 34.0 bits (78), Expect = 0.16
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 25/113 (22%)
Query: 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYL 354
P L G G GKT +A+ +A + F ++ E ++KL G L
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVA----NETGAFFFLINGPE-----IMSKLAGESESNL 286
Query: 355 GHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD-----------VLTVLLQLFDE 396
+ + +K A++ DE+D P +++ LL L D
Sbjct: 287 -----RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 33.5 bits (77), Expect = 0.20
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-K 326
D +VGQ+ I + ++RK H LF G G GKT A LA + + +
Sbjct: 17 DEVVGQDEVIQRLKGYVERKNI-----PH---LLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 327 EAFIRLDMSE 336
+ FI ++ S+
Sbjct: 69 DNFIEMNASD 78
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 33.2 bits (75), Expect = 0.23
Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 21/145 (14%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
I +E + + AI+ LFLG +G GKT ++K + I KKE
Sbjct: 20 KEIPFREDILRDAAIAIRYFVKNEV----KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKE 75
Query: 328 A-------FIRLDMSEYQ--EKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC------PNA 372
++ E + ++ L G G+ G L + + K A
Sbjct: 76 DEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA 135
Query: 373 VVLFDEVDK--AHPDVLTVLLQLFD 395
++ DEVD VL QL
Sbjct: 136 IIYLDEVDTLVKRRGGDIVLYQLLR 160
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.24
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 37/103 (35%)
Query: 229 AEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKE 288
E +I+ K+ E+ +E +A + EQ +++ A K E
Sbjct: 82 QEPESIR----KWREEQRKRLQELDAASKVM---EQEWREK-------------AKKDLE 121
Query: 289 NGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR 331
W + E K R +AF +
Sbjct: 122 E-WNQRQSE------------QVEKNKINN----RIADKAFYQ 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 32.4 bits (74), Expect = 0.27
Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 33/198 (16%)
Query: 251 EKEAEERR-------KYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFL 303
E++ +E + L L D + + I I A + +
Sbjct: 2 ERKRQESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAE-YEPGKKMKGLYLH 60
Query: 304 GSSGIGKTELAKQLAFYIHRDKKEA-FIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQL 362
GS G+GKT L +A + + + + V +L L +
Sbjct: 61 GSFGVGKTYLLAAIANELAKRNVSSLIVY-----------VPELFRELKHSLQDQTMNEK 109
Query: 363 TKRLKKCPNAVVLFDEV--DKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNL 420
+KK P V++ D++ + V + + R+ + T TSN
Sbjct: 110 LDYIKKVP--VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENL-PTF--------FTSNF 158
Query: 421 ASNEIAQHALQLRKEGEE 438
++A H ++ EE
Sbjct: 159 DMQQLAHHLTYSQRGEEE 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 32.2 bits (74), Expect = 0.40
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 258 RKY-PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQ 316
RK+ P Q D +VGQE + ++ + H +LF G+ G+GKT +A+
Sbjct: 15 RKWRP--QTFAD-VVGQEHVLTALANGLSLGRIH-----H--AYLFSGTRGVGKTSIARL 64
Query: 317 LA 318
LA
Sbjct: 65 LA 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 32.2 bits (73), Expect = 0.45
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLA 318
+VGQ +A ++ G L G G GKT +A +A
Sbjct: 46 MVGQLAARRAAGVVLEMIREGKIAGR---AVLIAGQPGTGKTAIAMGMA 91
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 32.0 bits (73), Expect = 0.48
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDK-K 326
D IVGQE + + +K H LF G G+GKT A LA + + +
Sbjct: 25 DDIVGQEHIVKRLKHYVKTGSM-----PH---LLFAGPPGVGKTTAALALARELFGENWR 76
Query: 327 EAFIRLDMSE 336
F+ L+ S+
Sbjct: 77 HNFLELNASD 86
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 32.1 bits (74), Expect = 0.50
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 246 ADLQREKEAEERRKYPLEQRLKDRIVGQESAIN----IISAAIKRKENGWTDDDHPLVFL 301
+ E E P I GQES I+AA KR E DH L
Sbjct: 10 IEKYSFDETYETSLRP--SNFDGYI-GQESIKKNLNVFIAAAKKRNECL----DHILFS- 61
Query: 302 FLGSSGIGKTELAKQLA 318
G +G+GKT LA ++
Sbjct: 62 --GPAGLGKTTLANIIS 76
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 32.1 bits (74), Expect = 0.55
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 36/95 (37%)
Query: 302 FLGSSGIGKTELAKQLAFYIHRDKKEAFIRL------DMSE-------YQEKHEVAKLIG 348
G G+GKT LAK +A + R F+R+ D SE Y +G
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRK----FVRISLGGVRDESEIRGHRRTY---------VG 159
Query: 349 APPGYLGHDDGGQLTKRLKKC--PNAVVLFDEVDK 381
A PG ++ + +KK N V L DE+DK
Sbjct: 160 AMPG--------RIIQGMKKAGKLNPVFLLDEIDK 186
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.9 bits (72), Expect = 0.63
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 23/120 (19%)
Query: 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFI- 330
GQ++A NI+ AIK K++ G +G G T L K + + + I
Sbjct: 29 GQKNAFNIVMKAIKEKKH---------HVTINGPAGTGATTLTKFIIEALISTGETGIIL 79
Query: 331 ---------RLDMSEY--QEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEV 379
+S+ +E + ++ P + + + V++ DEV
Sbjct: 80 AAPTHAAKKI--LSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEV 137
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 31.4 bits (70), Expect = 0.66
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 290 GWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
G P+ L G SG GKT + + + + +D ++ +H +
Sbjct: 25 GKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGN----IVIIDGDSFRSQHPHYLELQQ 80
Query: 350 PPGY----LGHDDGGQLTKRLKK 368
G D G++ + L
Sbjct: 81 EYGKDSVEYTKDFAGKMVESLVT 103
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 31.1 bits (70), Expect = 0.69
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 297 PLVFLFLGSSGIGKTELAKQLA 318
P + + G GKT L++ LA
Sbjct: 5 PALIIVTGHPATGKTTLSQALA 26
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 31.4 bits (72), Expect = 0.80
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 251 EKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGK 310
+ K ++++L ++ + + + + V L +G +G+GK
Sbjct: 57 RASGRKDLKEAVKEKLVG-MLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGK 115
Query: 311 T----ELAKQL 317
T +L +
Sbjct: 116 TTTIAKLGRYY 126
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 31.0 bits (71), Expect = 0.97
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 264 QRLKDRIVGQESAIN----IISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLA 318
+ L + I GQE + AA RKE +H L+F G G+GKT LA +A
Sbjct: 9 KTLDEYI-GQERLKQKLRVYLEAAKARKEP----LEHLLLF---GPPGLGKTTLAHVIA 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 31.0 bits (71), Expect = 0.97
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 248 LQREKEAEERRKYPLE-QRLKDRIVGQESAIN----IISAAIKRKENGWTDDDHPLVFLF 302
L E+ + L + L + I GQE+ + AA R E DH L+
Sbjct: 5 LTPERTVYDSGVQFLRPKSLDEFI-GQENVKKKLSLALEAAKMRGEVL----DHVLLA-- 57
Query: 303 LGSSGIGKTELAKQLA 318
G G+GKT LA +A
Sbjct: 58 -GPPGLGKTTLAHIIA 72
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.4 bits (68), Expect = 1.2
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 292 TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP 351
T + +++ +G SG GK+ +A ++A + LD + + K+ P
Sbjct: 3 TTNHDHHIYVLMGVSGSGKSAVASEVA------HQLHAAFLDGDFLHPRRNIEKMASGEP 56
Query: 352 GYLGHDD--------GGQLTKRLKKCPNAVVLFDEVDKAHPDVL 387
L DD + ++++ + K + D+L
Sbjct: 57 --LNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLL 98
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 31.0 bits (71), Expect = 1.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 258 RKY-PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQ 316
RK+ P Q D +VGQE + ++ + H +LF G+ G+GKT +A+
Sbjct: 8 RKWRP--QTFAD-VVGQEHVLTALANGLSLGRIH-----H--AYLFSGTRGVGKTSIARL 57
Query: 317 LA 318
LA
Sbjct: 58 LA 59
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 30.8 bits (70), Expect = 1.2
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 301 LFLGSSGIGKTELAKQLA 318
L G+G L L+
Sbjct: 28 LIQALPGMGDDALIYALS 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.3 bits (71), Expect = 1.2
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
V ++ ++ I + W + P G +G GK+ LA + H +
Sbjct: 124 VIFVTRKKLVHAIQQKL------WKLNGEPGWVTIYGMAGCGKSVLAAEAV-RDHSLLEG 176
Query: 328 AF 329
F
Sbjct: 177 CF 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 30.5 bits (69), Expect = 1.4
Identities = 20/138 (14%), Positives = 47/138 (34%), Gaps = 29/138 (21%)
Query: 252 KEAEERRKYPLEQRLKDRIVGQESAINIISAAIKR--KENGWTDDDHPLVFLFLGSSGIG 309
K A + + + I+ + + + ++ +D + L G G
Sbjct: 17 KPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSG 76
Query: 310 KTELAKQLAFYIHRDKKEA---FIRL----DMSEYQEKHEVAKLIGAPPGYLGHDDGGQL 362
KT LA ++A +E+ FI++ M + E + + ++
Sbjct: 77 KTALAAKIA-------EESNFPFIKICSPDKMIGFSETAKCQAMK-------------KI 116
Query: 363 TKRLKKCPNAVVLFDEVD 380
K + V+ D+++
Sbjct: 117 FDDAYKSQLSCVVVDDIE 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.0 bits (70), Expect = 1.4
Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 33/190 (17%)
Query: 299 VFLFLGSSGIGKTELAKQLAF----------YIHRDKKEAFIRLDMS-------EYQEKH 341
+ L G++G GKT L + ++ A + + E + ++
Sbjct: 283 IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQN 342
Query: 342 EVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFD-----EVDKAHPDVLTVLLQLFDE 396
+ + P D + + A + D ++ ++ +
Sbjct: 343 LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGY 402
Query: 397 GR-------LTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKS 449
+ T+ + + S + I LQ + E R ++ K
Sbjct: 403 AKQEEITGLFTNTSDQFMGAHSITDSHISTITDTII---LLQYVEIRGEM-SRAINVFKM 458
Query: 450 QGSNLDVTIS 459
+GS D I
Sbjct: 459 RGSWHDKAIR 468
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 30.4 bits (69), Expect = 1.5
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 262 LEQRLKDRIVGQESAINIISAAIKR---KENGWTDDDHPLVFLFLGSSGIGK-TELAKQL 317
L ++ + +E+ + + + + W + H + GS+G GK T LAK L
Sbjct: 67 LRFSVEAGGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAK-L 125
Query: 318 A--FYIHRDKKEAFIRLD 333
A + + KK AFI D
Sbjct: 126 AAISMLEKHKKIAFITTD 143
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 30.2 bits (69), Expect = 1.8
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 250 REKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIG 309
R+K + ++ L + + + + + + ++ +F+ +G +G G
Sbjct: 62 RKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFK----ENRLNIFMLVGVNGTG 117
Query: 310 KT----ELAKQL 317
KT ++A
Sbjct: 118 KTTSLAKMANYY 129
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 29.7 bits (66), Expect = 1.8
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 301 LFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGH 356
L G + IGK+EL+ L D+ + D+ + ++++ +LIG+ P
Sbjct: 20 LITGEANIGKSELSLALI-----DRGHQLVCDDVIDLKQENN--QLIGSCPSVANG 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 30.3 bits (68), Expect = 1.9
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 271 VGQESAIN----IISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLA 318
VGQE+A I+ +K G L G G GKT LA +A
Sbjct: 40 VGQENAREACGVIVELIKSKKMAG----RA---VLLAGPPGTGKTALALAIA 84
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 278 NIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEY 337
N ++ ++ G + P FL G G GKT L + + + I +D +
Sbjct: 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIF----EETQGNVIVIDNDTF 69
Query: 338 QEKHEVAKLIGAPPGY----LGHDDGGQLTKRLKK 368
+++H + ++T+ +
Sbjct: 70 KQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIIS 104
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 29.2 bits (65), Expect = 2.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 301 LFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGH 356
L G SG+GK+E A +L + I D + ++ E ++GA P L H
Sbjct: 38 LITGDSGVGKSETALELV-----QRGHRLIADDRVDVYQQDE-QTIVGAAPPILSH 87
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 29.6 bits (66), Expect = 3.1
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 227 DYAEDANIKQILQKYAEKYAD----LQREKEAEERRKYPLEQRLKDRIVGQESAI----N 278
+Y +++ L+ Y + + L+ A + + L+++L V ++
Sbjct: 76 NYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREY 135
Query: 279 IISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAF 329
+ IK+ + D D +FL G +G GK+ +A Q A
Sbjct: 136 HVDRVIKKLDE-MCDLDSFFLFLH-GRAGSGKSVIASQ-ALSKSDQLIGIN 183
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 29.4 bits (67), Expect = 3.2
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 264 QRLKDRIVGQESAI-NIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKT----ELAKQL 317
+RL+++ ++ II + + P V + +G +G GKT +LAK
Sbjct: 70 ERLEEKDGDALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 28.9 bits (64), Expect = 3.7
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 292 TDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPP 351
+ + +G SG GKT +A +A + + + +A + P
Sbjct: 24 MTGEPTRHVVVMGVSGSGKTTIAHGVA------DETGLEFAEADAFHSPENIATMQRGIP 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 29.5 bits (66), Expect = 3.8
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 7/60 (11%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
+ + E N + + + + L G +G GK L I
Sbjct: 14 NALSHNEELTNFLKSLSDQPRDLPH-------LLLYGPNGTGKKTRCMALLESIFGPGVY 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.1 bits (64), Expect = 3.8
Identities = 16/142 (11%), Positives = 34/142 (23%), Gaps = 19/142 (13%)
Query: 267 KDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKT----ELAKQLAFYIH 322
++ + Q I I +F + K ++ +L
Sbjct: 19 RELLKSQVEDFTRIFLPIYDSLMSSQ----NKLFYITNADDSTKFQLVNDVMDELITSSA 74
Query: 323 RDKKEAF--IRLDMSEYQEKHEVAKLIG--------APPGYLGHDDGGQLTKRLKKCPNA 372
R + F I +D E + + I L + K
Sbjct: 75 RKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKT 134
Query: 373 VVLFDEVDK-AHPDVLTVLLQL 393
++L + +L +
Sbjct: 135 LILIQNPENLLSEKILQYFEKW 156
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.5 bits (63), Expect = 4.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 292 TDDDHPLVFLFLGSSGIGKTELAKQLA 318
TDD + L G G GK+ +A+ LA
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEALA 30
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.9 bits (64), Expect = 4.8
Identities = 23/177 (12%), Positives = 44/177 (24%), Gaps = 37/177 (20%)
Query: 267 KDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLA-----FYI 321
++ I +E + +++ L LG +GK+ L + I
Sbjct: 11 REDIFDREEESRKLEESLENYPL----------TLLLGIRRVGKSSLLRAFLNERPGILI 60
Query: 322 ---------HRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQ----------L 362
+E I+ S + + L
Sbjct: 61 DCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFREL 120
Query: 363 TKRLKKCPNAVVLFDEV---DKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVM 416
++ +V FDE LL LF + K I + ++
Sbjct: 121 NDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLL 177
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 4.9
Identities = 36/147 (24%), Positives = 50/147 (34%), Gaps = 32/147 (21%)
Query: 185 MTFLGFSALHYGVVAGN--TEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYA 242
+TF L G G+ EV++ LL+ GA V + + + I KY
Sbjct: 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGA--KVVVTTSRFSKQVTDYY--QSIYAKYG 527
Query: 243 EKYADLQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLF 302
K + L P Q K + E+ I I K GW D D + F
Sbjct: 528 AKGSTL---------IVVPFNQGSKQDV---EALIEFIYDTEKNGGLGW-DLDAIIPFAA 574
Query: 303 LGSSGI------GKTELAKQLAFYIHR 323
+ GI K+E A HR
Sbjct: 575 IPEQGIELEHIDSKSEFA-------HR 594
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 28.7 bits (65), Expect = 5.3
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 481 LGRINEIVY-FLPFSK--------SELHTLVCRELNFWAKKALDKHNINIVWDIDVETIL 531
L R I+ +L F+K + + + + + ++I + +++
Sbjct: 60 LDRAEAIITDYLTFAKPAPETPEKLNVKLEI-ERVIDILRPLANMSCVDIQATLAPFSVI 118
Query: 532 AD 533
+
Sbjct: 119 GE 120
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 29.0 bits (65), Expect = 5.4
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 15/103 (14%)
Query: 234 IKQILQKYAEKYADLQREKEAEERRKYPLEQ-------RLKDRIVGQESAINIISAAIKR 286
+ +L + + Y + V ++ +N I + +
Sbjct: 83 LAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSK 142
Query: 287 KENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAF 329
P G +G GK+ LA + E
Sbjct: 143 ------LKGEPGWVTIHGMAGCGKSVLAAEA--VRDHSLLEGC 177
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 28.7 bits (64), Expect = 5.8
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEA------FIRLDMSEYQEKHE 342
+ + G G+GK+ +K LA + ++ + IR ++EK+E
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYE 55
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 28.4 bits (64), Expect = 7.3
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 242 AEKYADLQREKEAEERRKYP------LEQRLKDRIVGQESAINIISAAIKRKENGWTDDD 295
+ + ++K ++ + +E+ +K+ + I + ++ +
Sbjct: 73 VDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRK-----AE 127
Query: 296 HPLVFLFLGSSGIGKT----ELAKQL 317
P V +F+G +G GKT +LA L
Sbjct: 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.392
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,312,256
Number of extensions: 580849
Number of successful extensions: 2593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2207
Number of HSP's successfully gapped: 429
Length of query: 607
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 508
Effective length of database: 3,937,614
Effective search space: 2000307912
Effective search space used: 2000307912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)