RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1308
(607 letters)
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 221 bits (563), Expect = 8e-68
Identities = 114/329 (34%), Positives = 188/329 (57%), Gaps = 28/329 (8%)
Query: 248 LQREKEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSS 306
+ + E E + LE+ L R+VGQ+ AI ++ AI+R G D + P+ FLFLG +
Sbjct: 3 VSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPT 62
Query: 307 GIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRL 366
G+GKTELAK LA + D +EA IR+DM+EY EKH V++LIGAPPGY+G+++GGQLT+ +
Sbjct: 63 GVGKTELAKTLAATLF-DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV 121
Query: 367 KKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIA 426
++ P +V+LFDE++KAHPDV +LLQ+ D+GRLTD G+T++ ++ + ++TSNL S I
Sbjct: 122 RRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLIL 181
Query: 427 QHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINE 486
+ + + + + R EFL R++E
Sbjct: 182 EGLQKGWPYERIRDEVFKVL--------------------------QQHFRPEFLNRLDE 215
Query: 487 IVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKH 546
IV F P +K ++ +V +L++ + +K + + + + GYD +GAR ++
Sbjct: 216 IVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRR 275
Query: 547 EVERQVVSQLAAAHEKSVIGKGSFVRLYV 575
++R++ + LA + +G V++ V
Sbjct: 276 VIQRELETPLAQKILAGEVKEGDRVQVDV 304
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 181 bits (461), Expect = 5e-53
Identities = 97/315 (30%), Positives = 150/315 (47%), Gaps = 32/315 (10%)
Query: 262 LEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPL-VFLFLGSSGIGKTELAKQLAFY 320
L RLK + GQ+ AI ++ AIK G + P+ FLF G +G+GKTE+ QL+
Sbjct: 16 LGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 75
Query: 321 IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVD 380
+ + +R DMSEY E+H V++LIGAPPGY+G D GG LT + K P+AV+L DE++
Sbjct: 76 LGIE----LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE 131
Query: 381 KAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFS 440
KAHPDV +LLQ+ D G LTD G+ + ++ + VMT+N E + ++ L +
Sbjct: 132 KAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQ----- 186
Query: 441 KRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHT 500
+K+ F EF R++ I++F S +H
Sbjct: 187 ---------------------DNSTDAMEEIKKIFTP-EFRNRLDNIIWFDHLSTDVIHQ 224
Query: 501 LVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVHYGARSIKHEVERQVVSQLAAAH 560
+V + + + K V + GYD GAR + ++ + LA
Sbjct: 225 VVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 284
Query: 561 EKSVIGKGSFVRLYV 575
+ G V + +
Sbjct: 285 LFGSLVDGGQVTVAL 299
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 124 bits (313), Expect = 6e-32
Identities = 45/325 (13%), Positives = 109/325 (33%), Gaps = 37/325 (11%)
Query: 262 LEQRLKDRIVGQESAINIISAAI----------KRKENGWTDDDH------------PLV 299
L+ L + ++GQE A + S A+ ++ + D +
Sbjct: 11 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSN 70
Query: 300 FLFLGSSGIGKTELAKQLAFYIH----RDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLG 355
L +G +G GKT +A+ LA ++ + ++ + +L+ A +
Sbjct: 71 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 130
Query: 356 HDDGG--QLTKRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFD--EGRLTDGKGKTIECKD 411
G + + K + D + V LL++ + + G+ +
Sbjct: 131 KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGN 190
Query: 412 AIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPIL 471
I + TS++ + ++ ++ + S + H V L
Sbjct: 191 FIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH---LVQTHDL 247
Query: 472 KRHFRRDEFLGRINEIVYFLPFSKSELHTLVCRELNFWAKK---ALDKHNINIVWDIDVE 528
+ E +GR+ + S + ++ + N K+ ++++++ +
Sbjct: 248 VTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAI 307
Query: 529 TILAD-GYDVHYGARSIKHEVERQV 552
+A + GAR ++ +E
Sbjct: 308 KEIAQLALERKTGARGLRAIIEDFC 332
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 88.7 bits (219), Expect = 5e-20
Identities = 55/308 (17%), Positives = 100/308 (32%), Gaps = 67/308 (21%)
Query: 262 LEQRLKDRIVGQESAINIISAAIKRK------ENGWTDDDHPLVFLFLGSSGIGKTELAK 315
+ L I+GQ A ++ A++ + + + P L +G +G+GKTE+A+
Sbjct: 8 IVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIAR 67
Query: 316 QLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVL 375
+LA + FI+++ +++ E V K + + L GG + + +V
Sbjct: 68 RLAKLANA----PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNG---IVF 120
Query: 376 FDEVDKAHPDVLTVLLQLFDEGRLTD----GKGKTIECKDAIFVMTSNLASNEIAQHALQ 431
DE+DK + EG D +G T+ K + L A
Sbjct: 121 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ--- 177
Query: 432 LRKEGEEFSKRTPSISKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFL 491
+ + E GR+ V
Sbjct: 178 --------------------------------------VARPSDLIPELQGRLPIRVELT 199
Query: 492 PFSKSELH---TLVCRELNFWAKKALDKHNINIVWDIDVETILAD------GYDVHYGAR 542
S ++ T L K + +NI + D +A+ + GAR
Sbjct: 200 ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGAR 259
Query: 543 SIKHEVER 550
+ +ER
Sbjct: 260 RLHTVMER 267
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 87.3 bits (215), Expect = 5e-19
Identities = 42/192 (21%), Positives = 63/192 (32%), Gaps = 32/192 (16%)
Query: 88 LT-LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146
LT L A+ G +K ++ N+ + TPLH+AA G + + LL+ A
Sbjct: 1 LTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59
Query: 147 NLGDLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNM------------------- 185
N + +H A N ++LL+ N
Sbjct: 60 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119
Query: 186 ---------TFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236
T GF+ LH G V ELLL+ A P +G P A N
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179
Query: 237 ILQKYAEKYADL 248
I++ +
Sbjct: 180 IVKLLLPRGGSP 191
Score = 84.6 bits (208), Expect = 3e-18
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 7/165 (4%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+ G E+ + + + + N+ + G TPLH+ A G V VL++ G +
Sbjct: 235 LHLAAQEGH-AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA- 292
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ T + + L + + T LG+S LH G+T++V LLL
Sbjct: 293 --TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350
Query: 210 KSGADPTVKDNSGHIPSDYAEDAN---IKQILQKYAEKYADLQRE 251
K+GA P + G P A+ + +L+ ++ + +
Sbjct: 351 KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 395
Score = 71.9 bits (175), Expect = 4e-14
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 36/128 (28%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVL 181
TPLHVA+ G + V+ LL+ GA+PN+ ++
Sbjct: 2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVK----------------------------- 32
Query: 182 NPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241
+ LH AG+TEV + LL++ A K P A +++
Sbjct: 33 -------VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85
Query: 242 AEKYADLQ 249
E A+
Sbjct: 86 LENNANPN 93
Score = 66.2 bits (160), Expect = 3e-12
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 4/159 (2%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+YG + + +E N G TPLHVA + +D V++LL G +P+
Sbjct: 136 LHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
T +V + R + G + LH G+ E+V LLL
Sbjct: 195 AWNG---YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 251
Query: 210 KSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
A+ + + SG P + + +
Sbjct: 252 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 76.2 bits (186), Expect = 2e-16
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF-NTVHRTAAEKKMNPFEVLL 171
VN + G TPLH AA + + +LLE GANP+ D + T AA K +L
Sbjct: 96 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 155
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED 231
++ + G + LH E +LL+ GA +++ P A+
Sbjct: 156 LYYKASTNIQDTE----GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG 211
Query: 232 AN---IKQILQ 239
+K++++
Sbjct: 212 GLGLILKRMVE 222
Score = 73.5 bits (179), Expect = 2e-15
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 7/145 (4%)
Query: 82 CQSIKDLTLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLE 141
C S +L + A G +ELK I K T LH A G + V LL+
Sbjct: 1 CVS--NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 58
Query: 142 AGANPNLGDLFNTVH-RTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAG 200
G N D AA + L + + +N N G + LHY
Sbjct: 59 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN----GCTPLHYAASKN 114
Query: 201 NTEVVELLLKSGADPTVKDNSGHIP 225
E+ +LL+ GA+P KD+
Sbjct: 115 RHEIAVMLLEGGANPDAKDHYEATA 139
Score = 36.1 bits (82), Expect = 0.008
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLE 141
L A +E K + + + + TPL VA G ++ ++E
Sbjct: 173 LHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222
Score = 29.9 bits (66), Expect = 0.62
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 203 EVVELLLKSGADPTVKDNSGHIPSDYA 229
E+ E +L + T D +A
Sbjct: 18 ELKESILADKSLATRTDQDSRTALHWA 44
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 71.5 bits (174), Expect = 3e-14
Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 3/139 (2%)
Query: 113 VNMRHPLGWTPLHVAAINGKVDNVRVLL-EAGANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
G T L AA G V+ +++LL E GA+ N D A + +V
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200
Query: 172 KREDEFNDVLNPNM-TFLGFSALHYGVVAGNTEVVELLL-KSGADPTVKDNSGHIPSDYA 229
+ + N+ G + L V + +V+ LL + + D+ G A
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260
Query: 230 EDANIKQILQKYAEKYADL 248
+ +K+I + ++ A
Sbjct: 261 VELKLKKIAELLCKRGAST 279
Score = 67.7 bits (164), Expect = 5e-13
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNV----RVLLEAGAN 145
L AA G + LK ++ DVN +G L A ++ +V +LL+ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211
Query: 146 PNLGDLFNT--VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTE 203
N+ + +K + + LL++E + + + G +AL V +
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD----GKTALLLAVELKLKK 267
Query: 204 VVELLLKSGADPTVKD 219
+ ELL K GA D
Sbjct: 268 IAELLCKRGASTDCGD 283
Score = 64.2 bits (155), Expect = 6e-12
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L A ++ +E +++N G T L +A +L + GA+ + G
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Query: 150 DL 151
DL
Sbjct: 283 DL 284
Score = 56.5 bits (135), Expect = 2e-09
Identities = 39/196 (19%), Positives = 64/196 (32%), Gaps = 43/196 (21%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHP-LGWTPLHVAAINGKVDNVRVLL-------- 140
L +A + ++ +E +VN + GWTPLH A + D V +LL
Sbjct: 9 LIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 141 -------------------------EAGANPNLGDLF-NTVHRTAAEKKMNPFEVLLKRE 174
GA+ N D + T AA L +
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 175 DEFNDVLNPNMTFL------GFSALHYGVVAGNTEVVELLL-KSGADPTVKDNSGHIPSD 227
++ G +AL G+ EV+++LL + GAD DN G
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187
Query: 228 YAEDANIKQILQKYAE 243
+A ++ ++
Sbjct: 188 HALLSSDDSDVEAITH 203
Score = 43.0 bits (100), Expect = 5e-05
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 35/123 (28%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVL 181
L A N VD V+ LLE GAN N +
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG---------------------------- 38
Query: 182 NPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241
G++ LH V ++VELLL+ GADP ++ +G P A A ++L+ +
Sbjct: 39 -------GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91
Query: 242 AEK 244
K
Sbjct: 92 LSK 94
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 71.8 bits (175), Expect = 4e-14
Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 13/191 (6%)
Query: 41 TQADFKSCLSVF-PKIRQSNNTCMYNNLLFASACSLALTL---LECQSIKDLT-LFRAAR 95
+K + +F P + L +A A L + IK F AA
Sbjct: 40 MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI 99
Query: 96 YGSAKELKTFIE--NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFN 153
G + L T S V + + +AA NG + + L E + +
Sbjct: 100 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 159
Query: 154 ----TVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
A ++ L + + ++ V G+ V+ LL
Sbjct: 160 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN--YYAFRWAAVGRGHHNVINFLL 217
Query: 210 KSGADPTVKDN 220
+
Sbjct: 218 DCPVMLAYAEI 228
Score = 49.5 bits (117), Expect = 5e-07
Identities = 12/146 (8%), Positives = 30/146 (20%), Gaps = 45/146 (30%)
Query: 108 NSKLDVNMRHPLGWTPLHVAAINGKVDNVRV---LLEAGANPNLGDLFNTVHRTAAEKKM 164
D + + VAAI G + LL + +
Sbjct: 78 QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE------------ 125
Query: 165 NPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSG-- 222
+ A G+ V+ L + +
Sbjct: 126 ------------------------NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 161
Query: 223 ----HIPSDYAEDANIKQILQKYAEK 244
+ ++ + ++ + +
Sbjct: 162 YHAFRLAAENGHLHVLNRLCELAPTE 187
Score = 45.3 bits (106), Expect = 1e-05
Identities = 21/155 (13%), Positives = 38/155 (24%), Gaps = 9/155 (5%)
Query: 55 IRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKELKTFIENSKLDVN 114
I+ N + ++ LL+C + YG +
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN---- 247
Query: 115 MRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKRE 174
R ++ +G D L+ + + R E ++ LL
Sbjct: 248 -RLKEMHDAFKLSNPDGVFD----LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 302
Query: 175 DEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
+ L + GN LLL
Sbjct: 303 GIKALAPTATIPGDANELLRLALRLGNQGACALLL 337
Score = 37.6 bits (86), Expect = 0.004
Identities = 17/147 (11%), Positives = 35/147 (23%), Gaps = 15/147 (10%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNM--RHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
AA G L E + + + + A G + + LL+
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224
Query: 148 L--------GDLFNTVHRTAAEKKMNPFEVLLKR--EDEFNDVLNPNMT---FLGFSALH 194
G+ + ++ K D D++ + F L
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 284
Query: 195 YGVVAGNTEVVELLLKSGADPTVKDNS 221
+ + LL + +
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTA 311
Score = 35.3 bits (80), Expect = 0.021
Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 4/56 (7%)
Query: 90 LFRAARYGSAKELKTFIE----NSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLE 141
L R +++ + + L +A G +LL
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338
Score = 32.9 bits (74), Expect = 0.087
Identities = 18/149 (12%), Positives = 36/149 (24%), Gaps = 28/149 (18%)
Query: 102 LKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAE 161
+ FI ++L + + + ++L A+ N + A
Sbjct: 28 FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAK---QLWSDAH 84
Query: 162 KKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVE---LLLKSGADPTVK 218
KK + G + ++ LLL S V
Sbjct: 85 KKGIK----------------------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 122
Query: 219 DNSGHIPSDYAEDANIKQILQKYAEKYAD 247
+ A + +L + E
Sbjct: 123 QAENYQAFRLAAENGHLHVLNRLCELAPT 151
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 64.7 bits (156), Expect = 5e-12
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 18/156 (11%)
Query: 91 FRAARYGSAKELKTFIENSKL---DVNMRHPLGWTPLHVAAINGKVDN------------ 135
+A + + + TF + + + T LH I +
Sbjct: 145 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 204
Query: 136 VRVLLEAGANPNLGD--LFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSAL 193
+ +++ P + ++ + L + ++LN G + L
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN-AQDSNGDTCL 263
Query: 194 HYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229
+ GN +V+ LL GADP + + SG P D+
Sbjct: 264 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299
Score = 58.9 bits (141), Expect = 5e-10
Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 19/174 (10%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPL---GWTPLHVAAINGKVDNVRVLLEAGAN 145
+ +E+ N++L++N+ P+ G TPLH ++ V+ L++ G+N
Sbjct: 75 QQQHVSFDSLLQEVNDAFPNTQLNLNI--PVDEHGNTPLHWLTSIANLELVKHLVKHGSN 132
Query: 146 PNLGDLFNTVHRTAAEKKMNPFEV-------------LLKREDEFNDVLNPNMTFLGFSA 192
GD A K +N ++ L+ + +L+ + G +
Sbjct: 133 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 192
Query: 193 LHYGVVAGNTEVVELLLKSGADPTVK-DNSGHIPSDYAEDANIKQILQKYAEKY 245
++ ++K P N + IL+ K+
Sbjct: 193 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW 246
Score = 43.5 bits (101), Expect = 4e-05
Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 5/130 (3%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVL 181
L + L +N N + + EV + N L
Sbjct: 41 AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV---NDAFPNTQL 97
Query: 182 NPNMTF--LGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
N N+ G + LH+ N E+V+ L+K G++ DN G A +
Sbjct: 98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 157
Query: 240 KYAEKYADLQ 249
+ L
Sbjct: 158 TFEALLDYLY 167
Score = 33.1 bits (74), Expect = 0.077
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAA 128
L AAR G+ + ++ D + + G P+ A
Sbjct: 263 LNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA 300
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 62.8 bits (151), Expect = 2e-11
Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 6/152 (3%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTA---AEKKMNPFEVLLKREDE 176
G T LH+A I+ + LL A DL N + +TA A V
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 177 FNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQ 236
++ H +LL+ + ++ +
Sbjct: 69 AGVLVAERGGHTAL---HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 237 ILQKYAEKYADLQREKEAEERRKYPLEQRLKD 268
+ E+ +E + LE D
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157
Score = 50.1 bits (118), Expect = 2e-07
Identities = 35/209 (16%), Positives = 57/209 (27%), Gaps = 6/209 (2%)
Query: 43 ADFKSCLSVFPKIRQSNNTCMYNNLLFASACSLALTLLECQSIKDLTLFRAARYGSAKEL 102
A S K+ + + +A LA + L R + A +
Sbjct: 52 AAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111
Query: 103 KTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEK 162
P + N + + + + A
Sbjct: 112 YLTQSQDCTPDTSHAPA----AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167
Query: 163 KMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSG 222
+ V + + LN G + LH V A V+ELLLK+GADPT + G
Sbjct: 168 HKDAEMV--RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225
Query: 223 HIPSDYAEDANIKQILQKYAEKYADLQRE 251
P A + + A +
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPEPED 254
Score = 48.2 bits (113), Expect = 1e-06
Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 13/147 (8%)
Query: 90 LFRAARYGSAKELKTFIEN--SKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPN 147
L A + L + +++++ LG T LH+AAI G+ V L AGA
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72
Query: 148 LGDLFNTVHRTAAEKKMNP--FEVLLKREDEFN---------DVLNPNMTFLGFSALHYG 196
+ + A + VLL+ + A
Sbjct: 73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132
Query: 197 VVAGNTEVVELLLKSGADPTVKDNSGH 223
E ++ GH
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGH 159
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 59.7 bits (143), Expect = 2e-10
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 37/132 (28%)
Query: 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLK 172
G T LHVAA G + +++L++A + N+
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI------------------------ 227
Query: 173 REDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDA 232
+ G++ LH G E +L+++ D + G D A++
Sbjct: 228 ------------KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE- 274
Query: 233 NIKQILQKYAEK 244
+I L++ +K
Sbjct: 275 DILGYLEELQKK 286
Score = 57.0 bits (136), Expect = 2e-09
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF-NTVHRTAAEKKMNPFEVL 170
DVN++ GWTPLH AA GK + R+L+E + + T A E + E L
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283
Query: 171 LKRED 175
K+++
Sbjct: 284 QKKQN 288
Score = 43.9 bits (102), Expect = 2e-05
Identities = 13/64 (20%), Positives = 23/64 (35%)
Query: 182 NPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241
+ F + +G+TE V LL+ GAD + G A + +++
Sbjct: 33 KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92
Query: 242 AEKY 245
E
Sbjct: 93 VENG 96
Score = 39.7 bits (91), Expect = 6e-04
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLF-NTVHRTAAEKKMNPFEVLLKREDEFN 178
A +G + V LLE GA+ N ++ T A L N
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV----EN 95
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQIL 238
G+ LH G ++ E L+ GA ++ G P D AE+ ++++L
Sbjct: 96 GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 239 QKYAEKYA 246
Q +
Sbjct: 156 QNEVNRQG 163
Score = 37.8 bits (86), Expect = 0.003
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAING 131
A G +E+ +E D+N + G T LH A I+
Sbjct: 44 FLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDD 84
Score = 33.9 bits (76), Expect = 0.042
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKYAEKYADL 248
G +ALH G TEV++LL+++ D +KD G P A ++ + E D+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 56.5 bits (135), Expect = 4e-10
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 13/137 (9%)
Query: 89 TLFRAARYGSAKELKTFIE-----NSKLDVNMRHPLGWTPLHVAAINGKVDN---VRVLL 140
+L A + L K+ + H T LH+A + + V L+
Sbjct: 9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68
Query: 141 EAGANPNL-GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVA 199
+ N + +T LL R ++ N + G + L
Sbjct: 69 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES----GETPLDIAKRL 124
Query: 200 GNTEVVELLLKSGADPT 216
+ ELL ++ +
Sbjct: 125 KHEHCEELLTQALSGRF 141
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 55.6 bits (132), Expect = 3e-09
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHR--TAAEKKMNPFEVLL 171
R+ G T LHVA + V++LLE GA+ + D+ + A E LL
Sbjct: 104 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 163
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAED 231
+ + + G SALH G +V L++SGAD ++K+ P A
Sbjct: 164 LQHGANVNAQMYS----GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 219
Query: 232 ANIKQILQ 239
+ IL+
Sbjct: 220 RRVIDILR 227
Score = 43.3 bits (100), Expect = 3e-05
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 120 GWTPLHVAAINGKVDNVRVLL----EAGANPNLGD 150
G TPLH+A + G + V L+ + G ++ +
Sbjct: 3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN 37
Score = 42.9 bits (99), Expect = 4e-05
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVR 137
L A+ G ++T + + D ++++ TPL VA +D +R
Sbjct: 181 LHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR 227
Score = 42.1 bits (97), Expect = 7e-05
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 189 GFSALHYGVVAGNTEVVELLLK----SGADPTVKDNSGHIPSDYA 229
G + LH VV GN V L+ G + + +N P A
Sbjct: 3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47
Score = 37.1 bits (84), Expect = 0.004
Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 4/156 (2%)
Query: 90 LFRAARYGS---AKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146
L A G+ L + ++++ + L TPLH+A I VR+L+ AGA+P
Sbjct: 7 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66
Query: 147 NLGDLFNTVHRTAAEKKMNP-FEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVV 205
D A + +P L + + G +ALH V E V
Sbjct: 67 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126
Query: 206 ELLLKSGADPTVKDNSGHIPSDYAEDANIKQILQKY 241
+LLL+ GAD D N + +
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 162
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 55.9 bits (133), Expect = 4e-09
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 36/121 (29%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L AA+ + +K + + + + G TP+ +AA G+++ V L++ GA+
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 250
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL 209
D +A + +V++
Sbjct: 251 DAT------------------------------------DHTARQLAQANNHHNIVDIFD 274
Query: 210 K 210
+
Sbjct: 275 R 275
Score = 53.6 bits (127), Expect = 2e-08
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN---IKQILQKY 241
G + + G EVV L++ GA D + H A+ N I I +
Sbjct: 221 GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276
Score = 45.9 bits (107), Expect = 7e-06
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEA 142
+ AA+ G + + I+ V T +A N + V +
Sbjct: 225 IMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276
Score = 43.2 bits (100), Expect = 5e-05
Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 12/133 (9%)
Query: 109 SKLDVNMRHPL-GWTPLHVAAINGKVDNVRVLL--------EAGANPNLGDLFNTVHRTA 159
++ VN+ P T LH A N + L+ AGA+ N D T
Sbjct: 21 TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE---NTP 77
Query: 160 AEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKD 219
+ L SALH + ++ +L S +
Sbjct: 78 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 137
Query: 220 NSGHIPSDYAEDA 232
Sbjct: 138 ELDRNGMTALMIV 150
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 54.4 bits (130), Expect = 2e-08
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 264 QRLKDRIVGQESAINIISAAI----KRKENGWTDDDH--PLVFLFLGSSGIGKTELAKQL 317
L I+GQ A ++ A+ +R + P L +G +G+GKTE+A++L
Sbjct: 10 SELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRL 69
Query: 318 AFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKK 368
A + FI+++ +++ E V K + + L + ++
Sbjct: 70 A----KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIA 116
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 49.3 bits (116), Expect = 7e-08
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
Query: 118 PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEF 177
PL L +++ G+ D V+ ++ +P+L + A + +
Sbjct: 1 PL--ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI---VKFLVQ 55
Query: 178 NDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNS-GHIPSDYAEDA 232
V G++ LH N +V + L++SGA S +D E+
Sbjct: 56 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM 111
Score = 30.4 bits (67), Expect = 0.27
Identities = 2/26 (7%), Positives = 3/26 (11%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGAN 145
G + L
Sbjct: 103 TAADKCEEMEEGYTQCSQFLYGVQEK 128
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 50.6 bits (119), Expect = 1e-07
Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 2/138 (1%)
Query: 90 LFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLG 149
L +A +++ + + + + G PLH + + LL N NL
Sbjct: 4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63
Query: 150 DLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGN--TEVVEL 207
D + T + + + + + + G EV +
Sbjct: 64 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123
Query: 208 LLKSGADPTVKDNSGHIP 225
L+++GA +KD IP
Sbjct: 124 LIENGASVRIKDKFNQIP 141
Score = 49.8 bits (117), Expect = 3e-07
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTA-AEKKMNPFEVLLK 172
N G T LH+A + + L+E GA+ + D FN + L++
Sbjct: 99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QIPLHRAASVGSLKLIE 155
Query: 173 REDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLL-KSGADPTVKDNSGHIPSDYAED 231
G++ L + + G+ + LL+ K GA+ + DN G D A +
Sbjct: 156 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215
Query: 232 ANIKQIL 238
+K+
Sbjct: 216 EQVKKFF 222
Score = 42.1 bits (97), Expect = 9e-05
Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 40/103 (38%)
Query: 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEA-GANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
VN + GWTPL A G D +L+E GA +L D
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD--------------------- 203
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGAD 214
N G A A N +V + L + D
Sbjct: 204 ------NK---------GAKAEDV---ALNEQVKKFFLNNVVD 228
Score = 40.2 bits (92), Expect = 4e-04
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 192 ALHYGVVAGNTEVVELLLKS-GADPTVKDNSGHIPSDYA 229
LH + V+ LL S + KD G IP ++
Sbjct: 3 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41
Score = 39.0 bits (89), Expect = 8e-04
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 91 FRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGAN 145
F A G +E + ++ G VA + L +
Sbjct: 177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228
Score = 38.3 bits (87), Expect = 0.001
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 122 TPLHVAAINGKVDNVRVLLEA-GANPNLGD 150
PLH A + + V+ LL + + D
Sbjct: 2 YPLHQACMENEFFKVQELLHSKPSLLLQKD 31
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 50.7 bits (120), Expect = 1e-07
Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 8/157 (5%)
Query: 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR 331
+ N ++ ++ G + P FL G G GKT L + + I
Sbjct: 7 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGN----VIV 62
Query: 332 LDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTVLL 391
+D ++++H + D + ++ D+ + V+
Sbjct: 63 IDNDTFKQQHPNFDELVKLYE----KDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTG 118
Query: 392 QLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQH 428
+ D T + + ++VM ++ +
Sbjct: 119 RTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTI 155
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 48.3 bits (113), Expect = 2e-07
Identities = 33/150 (22%), Positives = 48/150 (32%), Gaps = 32/150 (21%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGDLFNT--------------------------- 154
L AA G+ D VR+L+ GA L +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 155 --VHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSG 212
V RT + + + L +ALH+ + EVVELL+K G
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 213 ADPTVKDNSGHIPSDYAEDAN---IKQILQ 239
AD + D + D + +ILQ
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 38.3 bits (87), Expect = 7e-04
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVL 139
DV+ + T ++ NG D +L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 49.5 bits (116), Expect = 3e-07
Identities = 44/212 (20%), Positives = 71/212 (33%), Gaps = 41/212 (19%)
Query: 90 LFRAARYGS---AKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANP 146
L A + E+ ++ +N ++ L TPLH+A I + + LL AG +P
Sbjct: 6 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 65
Query: 147 NLGDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFL------------------ 188
L D A ++ V + + L+ +
Sbjct: 66 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 125
Query: 189 -------------------GFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYA 229
G +ALH V N ++V LLLK GAD G+ P
Sbjct: 126 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 185
Query: 230 EDANIKQILQKYAEKYAD-LQREKEAEERRKY 260
+I Q+ + + LQ E+E+ Y
Sbjct: 186 WGRPSTRIQQQLGQLTLENLQMLPESEDEESY 217
Score = 40.6 bits (93), Expect = 2e-04
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 120 GWTPLHVAAINGKVDN----VRVLLEAGANPNLGD 150
G + LH+A I+ + +R + A N +
Sbjct: 2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN 36
Score = 38.7 bits (88), Expect = 9e-04
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 189 GFSALHYGVVAGNT----EVVELLLKSGADPTVKDNSGHIPSDYA 229
G S LH ++ EV+ + A ++N P A
Sbjct: 2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 48.2 bits (113), Expect = 8e-07
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 10/120 (8%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLA--FYIHRDK 325
D + Q+ A+ ++ +K H LF G G GKT L Y
Sbjct: 12 DEVTAQDHAVTVLKKTLKSANLP-----H---MLFYGPPGTGKTSTILALTKELYGPDLM 63
Query: 326 KEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPD 385
K + L+ S+ + V + + + P +++ DE D D
Sbjct: 64 KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD 123
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 44.1 bits (102), Expect = 7e-06
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 191 SALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDY 228
+ L G+ E + LL++ + ++ G
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 40
Score = 41.4 bits (95), Expect = 7e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 122 TPLHVAAINGKVDNVRVLLEAGANPNLGD 150
L AA G ++ + LL+ N N +
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVNVNAQN 31
Score = 40.6 bits (93), Expect = 1e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 113 VNMRHPLGWTPLHVAAINGKVDNVRVLLEAG 143
V R+ G T +A + G+ + V ++ G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156
Score = 34.5 bits (77), Expect = 0.017
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 189 GFSALHYGVVAGNTEVVELLLKSG 212
G +A + G EVV L+ +G
Sbjct: 133 GDTACDLARLYGRNEVVSLMQANG 156
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 43.0 bits (99), Expect = 9e-06
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 3/121 (2%)
Query: 119 LGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFN 178
+ A NG +D V+ + G + N A + +
Sbjct: 1 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 60
Query: 179 DVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDANIKQIL 238
+ Y G+ V+LLL GAD TVK G + ++ IK +L
Sbjct: 61 INAPDKHHITPLLSAVYE---GHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALL 117
Query: 239 Q 239
Q
Sbjct: 118 Q 118
Score = 27.2 bits (58), Expect = 3.2
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLE 141
++ P G T L ++ LL+
Sbjct: 95 TVKGPDGLTALEATD----NQAIKALLQ 118
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 43.0 bits (99), Expect = 1e-05
Identities = 24/124 (19%), Positives = 34/124 (27%), Gaps = 31/124 (25%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKREDEFND 179
L AA G+V+ VR LLEAGANPN + + LL +
Sbjct: 3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62
Query: 180 VLNPNMTF------------------------------LGFSALHYGVVAGNTEVVELLL 209
+P G + G+ +V L
Sbjct: 63 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122
Query: 210 KSGA 213
+ A
Sbjct: 123 -AAA 125
Score = 39.9 bits (91), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEA 142
++R G P+ +A G D R L A
Sbjct: 96 DVRDAWGRLPVDLAEELGHRDVARYLRAA 124
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 44.8 bits (104), Expect = 1e-05
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
R+ +E + + + H LG G GKT ++L
Sbjct: 16 KRLPHREQQLQQLDILLGNWLR--NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA 73
Query: 328 AFIRLDMSEYQEKHEV 343
F+ ++ Y+ +
Sbjct: 74 RFVYINGFIYRNFTAI 89
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 43.6 bits (101), Expect = 2e-05
Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 3/126 (2%)
Query: 114 NMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLLKR 173
N R G TPL +AA V L+ A A+ N D +TA
Sbjct: 84 NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS---GKTALHWAAAVNNTEAVN 140
Query: 174 EDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPTVKDNSGHIPSDYAEDAN 233
+ + L G+ E + LL + A+ + D+ +P D A +
Sbjct: 141 ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERL 200
Query: 234 IKQILQ 239
I++
Sbjct: 201 HHDIVR 206
Score = 42.1 bits (97), Expect = 7e-05
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 4/151 (2%)
Query: 98 SAKELKTFIENSKLDVNMRH-PLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVH 156
+A+ + + ++N G T LH+AA + D + LL+AGA+ N D
Sbjct: 1 TAQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP 59
Query: 157 RTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELLLKSGADPT 216
AA + + ++ + L +VE L+ + AD
Sbjct: 60 LHAAVAADAMGVFQILLRNRATNLNARMHDG--TTPLILAARLAIEGMVEDLITADADIN 117
Query: 217 VKDNSGHIPSDYAEDANIKQILQKYAEKYAD 247
DNSG +A N + + +A+
Sbjct: 118 AADNSGKTALHWAAAVNNTEAVNILLMHHAN 148
Score = 39.8 bits (91), Expect = 4e-04
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 36/97 (37%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNLGDLFNTVHRTAAEKKMNPFEVLL 171
+ + + TPL +AA G + + LL+ AN + D
Sbjct: 148 NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHM------------------- 188
Query: 172 KREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
+ ++V LL
Sbjct: 189 -----------------DRLPRDVASERLHHDIVRLL 208
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 42.1 bits (99), Expect = 1e-04
Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 41/170 (24%)
Query: 268 DRIVGQESAINIISAAI-------KRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFY 320
+ G + A ++ + + ++ G P L +G G GKT LAK +A
Sbjct: 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGK---IPKGVLMVGPPGTGKTLLAKAIA-- 66
Query: 321 IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVD 380
+ K F + S++ V +G + + ++ KK ++ DE+D
Sbjct: 67 --GEAKVPFFTISGSDF-----VEMFVGVGASRV-----RDMFEQAKKAAPCIIFIDEID 114
Query: 381 K-----------AHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419
H + L Q+ E DG + I + +N
Sbjct: 115 AVGRQRGAGLGGGHDEREQTLNQMLVE---MDGFEGN---EGIIVIAATN 158
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 41.8 bits (98), Expect = 1e-04
Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Query: 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAF 329
V + + I IK+ + + P+ L G SG+GK +A+ + R K+ F
Sbjct: 2 YVFESPKMKEILEKIKK----ISCAECPV--LITGESGVGKEVVARLIHKLSDRSKEP-F 54
Query: 330 IRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDVLTV 389
+ L+++ A+L G G + + + DE+ + +
Sbjct: 55 VALNVASIPRDIFEAELFGYEKGAFTGAVSSK-EGFFELADGGTLFLDEIGELSLEAQAK 113
Query: 390 LLQLFDEGRLTDGKGKTIECKDAIFVMTSN 419
LL++ + G+ G+ + + +N
Sbjct: 114 LLRVIESGKFYRLGGRKEIEVNVRILAATN 143
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 41.8 bits (98), Expect = 1e-04
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 24/121 (19%)
Query: 268 DRIVGQESAINIISAAI-------KRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFY 320
+ G E A + + + E G P L +G G+GKT LA+ +A
Sbjct: 9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA---RIPKGVLLVGPPGVGKTHLARAVAGE 65
Query: 321 IHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVD 380
FI S++ V +G + L + K+ +V DE+D
Sbjct: 66 ARVP----FITASGSDF-----VEMFVGVGAARV-----RDLFETAKRHAPCIVFIDEID 111
Query: 381 K 381
Sbjct: 112 A 112
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 40.2 bits (92), Expect = 2e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 112 DVNMRHPLGWTPLHVAAINGKVDNVRVLLE 141
D++ R G TPL +A G D V +L
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 38.6 bits (88), Expect = 6e-04
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 5/151 (3%)
Query: 89 TLFRAARYGSAKELKTFIENSKLDVNMRHPLGWTPLHVAAINGKVDNVRVLLEAGANPNL 148
L AA G +E++ + + + + G T L V + +L + +
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64
Query: 149 GDLFNTVHRTAAEKKMNPFEVLLKREDEFNDVLNPNMTFLGFSALHYGVVAGNTEVVELL 208
+ AA +L +V + G +H V G+T VV L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT----GALPIHLAVQEGHTAVVSFL 120
Query: 209 LKSGADPTVKDNSGHIPSDYAEDANIKQILQ 239
+D +D G P + A + ++
Sbjct: 121 AAE-SDLHRRDARGLTPLELALQRGAQDLVD 150
Score = 33.2 bits (74), Expect = 0.035
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 120 GWTPLHVAAINGKVDNVRVLLEA-GANPNLGD 150
L AA G V VR LL +P+ +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN 33
Score = 31.7 bits (70), Expect = 0.12
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 189 GFSALHYGVVAGNTEVV-ELLLKSGADPTVKDNSGH 223
L G+ + V LL + P + G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK 37
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 40.5 bits (94), Expect = 2e-04
Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 258 RKY-PLEQRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQ 316
RK+ P Q D +VGQE + ++ + +LF G+ G+GKT +A+
Sbjct: 4 RKWRP--QTFAD-VVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARL 53
Query: 317 LAFYIHRDKKE----AFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNA 372
LA ++ + + + E ++ V + +D L ++ P
Sbjct: 54 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 113
Query: 373 ----VVLFDEVDKAHPDVLTVLLQLFDEG 397
V L DEV LL+ +E
Sbjct: 114 GRFKVYLIDEVHMLSRHSFNALLKTLEEP 142
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 40.2 bits (92), Expect = 5e-04
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 7/60 (11%)
Query: 268 DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE 327
+ + E N + + + + L G +G GK L I
Sbjct: 11 NALSHNEELTNFLKSLSDQPRD-------LPHLLLYGPNGTGKKTRCMALLESIFGPGVY 63
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 38.9 bits (90), Expect = 0.001
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG 359
+LF G GKT LA L + +++ + E+ I +D
Sbjct: 157 WLFKGPIDSGKTTLAAALLELCGGK----ALNVNLPLDRLNFELGVAIDQFLVVF--EDV 210
Query: 360 GQLTKRLKKCPNAVVLFDEVDK 381
+ P + + +D
Sbjct: 211 KGTGGESRDLP-SGQGINNLDN 231
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 37.0 bits (84), Expect = 0.004
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 268 DRIVGQESAIN-IISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR 323
+ + + + R +G D +++ +G GIGKT LAK +
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 34.5 bits (78), Expect = 0.022
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 264 QRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAK 315
+ L + +GQE + + E + L G G+GKT LA
Sbjct: 6 KTLDE-YIGQERLKQKLRVYL---EAAKARKEPLEHLLLFGPPGLGKTTLAH 53
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 34.4 bits (77), Expect = 0.030
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 264 QRLKDRIVGQESAINIISAAIKRKEN---------GWTDDDHPLVFLFLGSSGIGKTELA 314
L+ + G + ++ + + EN G + G GIGKT A
Sbjct: 11 TNLQQ-VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 69
Query: 315 KQLAFYIH 322
+A +
Sbjct: 70 HLVAQELG 77
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 34.6 bits (79), Expect = 0.031
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDD 358
+ + G GKT L L + K+ + + E Y D
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGG--KDKYATVRFGEPLSG------------YNT--D 168
Query: 359 GGQLTKRLKKCP--NAVVLFDEVD 380
+ + + V++ D +
Sbjct: 169 FNVFVDDIARAMLQHRVIVIDSLK 192
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 34.1 bits (77), Expect = 0.040
Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 43/196 (21%)
Query: 257 RRKYPLEQRLKDRIVGQESAIN--IISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELA 314
R +P IVGQE +++A L G G GK+
Sbjct: 1 RPVFPFSA-----IVGQEDMKLALLLTAVDPGIGG----------VLVFGDRGTGKSTAV 45
Query: 315 KQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA------------PPGYLGHDDGGQL 362
+ LA + + + + + A ++ P G G L
Sbjct: 46 RALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 105
Query: 363 TK--------------RLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIE 408
L + + DE + ++ +LL + G +
Sbjct: 106 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSI 165
Query: 409 CKDAIFVMTSNLASNE 424
A FV+ + E
Sbjct: 166 RHPARFVLVGSGNPEE 181
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 33.8 bits (76), Expect = 0.048
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 262 LEQRLKDRIVGQESAINIISAAIKRKENGWTDDD--HPLVFLFLGSSGIGKTELAKQLAF 319
+ + I+ + + + + D + L G GKT LA ++A
Sbjct: 3 YASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 62
Query: 320 YIHRDKKEAFIRLDMSEYQEKHE 342
+ + M + E +
Sbjct: 63 ESNFPFIKICSPDKMIGFSETAK 85
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 32.6 bits (73), Expect = 0.087
Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 18/198 (9%)
Query: 254 AEERRKY-----PLEQRLK----DRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLG 304
+EE R+ P ++ + D IVGQE + + +K LF G
Sbjct: 1 SEEIREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT--------GSMPHLLFAG 52
Query: 305 SSGIGKTELAKQLAFYIHR-DKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLT 363
G+GKT A LA + + + F+ L+ S+ + + + + +
Sbjct: 53 PPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKI 112
Query: 364 KRLKKCPNAVVLFDEVDKAHPDVLTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASN 423
L + + + ++ + ++ + + I+ + AIF +
Sbjct: 113 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDED 172
Query: 424 EIAQHALQLRKEGEEFSK 441
+ EG E ++
Sbjct: 173 IAKRLRYIAENEGLELTE 190
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 32.6 bits (73), Expect = 0.090
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 264 QRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHR 323
+ L + +GQE+ +S A+ E + L G G+GKT LA +A +
Sbjct: 6 KSLDE-FIGQENVKKKLSLAL---EAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 61
Query: 324 DKKE 327
+
Sbjct: 62 NIHV 65
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.9 bits (71), Expect = 0.11
Identities = 11/81 (13%), Positives = 25/81 (30%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG 359
+ LG + +GK+ + + + KE I + + G +
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 360 GQLTKRLKKCPNAVVLFDEVD 380
L + A ++ +V
Sbjct: 66 ASLAPMYYRNAQAALVVYDVT 86
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.4 bits (72), Expect = 0.11
Identities = 7/70 (10%), Positives = 17/70 (24%), Gaps = 7/70 (10%)
Query: 273 QESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRL 332
+ A+ + L G+G L L+ Y+ + +
Sbjct: 7 LRPDFEKLVASYQAGR-------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSC 59
Query: 333 DMSEYQEKHE 342
+ +
Sbjct: 60 GHCRGCQLMQ 69
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 32.0 bits (72), Expect = 0.15
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 294 DDHPLVFLFLGSSGIGKTELAKQLAFYI-HRDKKEAFIRLDMSEYQEKH 341
+ V L +G +G+GKT +L Y + KK F D
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGT 51
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 31.7 bits (71), Expect = 0.17
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 287 KENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKL 346
KE D P V + +G G GK A +LA++ + + + E +
Sbjct: 2 KEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ 61
Query: 347 IGAPPG 352
+G G
Sbjct: 62 LGQQIG 67
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 31.5 bits (71), Expect = 0.22
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR 331
G++ + IS I+ E +F +G +G GKT + ++ I +
Sbjct: 13 GKKEILKGISFEIEEGE----------IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 332 LDMSEYQEKHEVAKLIGAPP 351
+ +E HEV KLI P
Sbjct: 63 -GKNVVEEPHEVRKLISYLP 81
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 31.1 bits (69), Expect = 0.26
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 264 QRLKDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIH 322
Q L D IVG + I+ + K + G GIGKT LA +
Sbjct: 12 QVLSD-IVGNKETIDRLQQIAKDGNMPH--------MIISGMPGIGKTTSVHCLAHELL 61
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 30.6 bits (68), Expect = 0.31
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 295 DHPLVFLFLGSSGIGKTELAKQLAF---YIHRDKKEAFIRLDMSEYQEKH 341
+P V + +G G GK+ ++ Y+H ++ +
Sbjct: 12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAA 61
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 30.7 bits (68), Expect = 0.34
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFI 330
P + + +G GKT ++K+L Y++
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 35
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 30.6 bits (69), Expect = 0.35
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 301 LFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGH 356
L G SG+GK+E A +L HR I D + ++ E ++GA P L H
Sbjct: 18 LITGDSGVGKSETALELVQRGHR-----LIADDRVDVYQQDE-QTIVGAAPPILSH 67
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.1 bits (66), Expect = 0.46
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342
G GK +A+ L +++ + L + +
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELS 51
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.5 bits (67), Expect = 0.50
Identities = 29/240 (12%), Positives = 63/240 (26%), Gaps = 29/240 (12%)
Query: 267 KDRIVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK 326
+ +E I + + L LG GK+ + K +
Sbjct: 11 RKDFFDREKEIEKLKGLRAP------------ITLVLGLRRTGKSSIIKIGI----NELN 54
Query: 327 EAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAVVLFDEVDKAHPDV 386
+I LD+ +++E++ ++ + + L K + +
Sbjct: 55 LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFN 114
Query: 387 LTVLLQLFDEGRLTDGKGKTIECKDAIFVMTSNLASNEIAQHALQLRKEGEEFSKRTPSI 446
+L L + + + + L L + + +
Sbjct: 115 WNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIM 174
Query: 447 SKSQGSNLDVTISRHFKDHVVQPILKRHFRRDEFLGRINEIVYFLPFSKSELHTLVCREL 506
S S+ ++ L+ GR V PFS+ E + R
Sbjct: 175 SGSE-------------MGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 221
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.9 bits (67), Expect = 0.53
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 301 LFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGH 356
L G SGIGK+E A L H F+ D E +L G
Sbjct: 19 LLTGRSGIGKSECALDLINKNHL-----FVGDDAIEIYRLGN--RLFGRAQEVAKK 67
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 30.0 bits (67), Expect = 0.57
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 293 DDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKE----AFIRLDMSEYQEKHEVAKLIG 348
+ P V L +G +G+GKT +LA + K A + ++ +
Sbjct: 5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 64
Query: 349 APPGYLGHD 357
P
Sbjct: 65 IPVIAQHTG 73
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 0.71
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 295 DHPLVFLFLGSSGIGKTELAKQLAFYI-HRDKKEAFIRLDMSEYQ 338
++ +G G GKT A +LA Y + ++ + D
Sbjct: 8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 52
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.5 bits (65), Expect = 0.88
Identities = 10/80 (12%), Positives = 30/80 (37%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG 359
++ +G +G+GK+ L Q + + I ++ + ++ G +
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 360 GQLTKRLKKCPNAVVLFDEV 379
+T+ + +L ++
Sbjct: 66 RSITRSYYRGAAGALLVYDI 85
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.5 bits (65), Expect = 0.91
Identities = 12/87 (13%), Positives = 26/87 (29%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDD 358
+ L G++G GKT L + +K+ A + + A G + +
Sbjct: 28 IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQN 87
Query: 359 GGQLTKRLKKCPNAVVLFDEVDKAHPD 385
++ + + D
Sbjct: 88 LLKIVCAYPESAGLEDHLQIIKSEIND 114
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.9 bits (64), Expect = 1.3
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFI 330
P V + +G +G GKT +LA + K +
Sbjct: 11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 44
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.9 bits (63), Expect = 1.3
Identities = 11/77 (14%), Positives = 22/77 (28%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG 359
+ +G G GKT K+ K A + +++ + G +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 65
Query: 360 GQLTKRLKKCPNAVVLF 376
G L ++
Sbjct: 66 GGLRDGYYIQAQCAIIM 82
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.3 bits (65), Expect = 1.4
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 268 DRIVGQESAIN-IISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKK 326
D ++G++ I +I ++R +N +P++ +G G+GKT + + LA I +
Sbjct: 22 DPVIGRDEEIRRVIQILLRRTKN------NPVL---IGEPGVGKTAIVEGLAQRIVKGDV 72
Query: 327 EAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKC-------PNAVVLFDE 378
++ K V+ +G+ G G+ +RLK V+LF +
Sbjct: 73 PEGLK-------GKRIVSLQMGSL--LAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 122
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.4 bits (63), Expect = 1.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 301 LFLGSSGIGKTELAKQL 317
L G SGIGK+E A +L
Sbjct: 19 LITGDSGIGKSETALEL 35
>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId:
1280]}
Length = 235
Score = 28.8 bits (64), Expect = 1.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 221 SGHIPSDYAEDANIKQILQKYAEKYADLQREKEAEERRKYPLEQRLKDRIVG 272
SGHI D ED + +K +K+ L + +A R ++ +++ IVG
Sbjct: 13 SGHISGDAMEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVG 64
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.4 bits (63), Expect = 2.1
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR 331
G+ +A+ +S +K E + LG SG GKT + +A + + +I
Sbjct: 14 GEVTAVREMSLEVKDGE----------FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 332 LDMSEYQEKHE 342
+ EK
Sbjct: 64 DKLVADPEKGI 74
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus
macerans [TaxId: 44252]}
Length = 214
Score = 28.1 bits (62), Expect = 2.2
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 479 EFLGRINEIVYFLPFSKSELHTLVCRELNFWAKKALDKHNINIVWDIDVETILADGYDVH 538
EFLG+ V F ++ + ++ + H W DG H
Sbjct: 26 EFLGKDTTKVQFNYYTNGVGGH--EKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKH 83
Query: 539 YGARSIKHEVERQVVSQLAAAHEKSVIGK---GSFVRLYVQWSK 579
+I + +++ +G + + W K
Sbjct: 84 TATANIPSTPGKIMMNLWNGTGVDDWLGSYNGANPLYAEYDWVK 127
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 28.2 bits (62), Expect = 2.4
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 9/131 (6%)
Query: 270 IVGQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAF 329
+E ++ + + D D +FL G +G GK+ +A Q + +
Sbjct: 22 CYIREYHVDRVIKKLDEMC----DLDSFFLFLH-GRAGSGKSVIASQALSKSDQLIGINY 76
Query: 330 ---IRLDMSEYQEKHEVAKLIGAPPGYLGHDDGGQLTKRLKKCPNAV-VLFDEVDKAHPD 385
+ L S K DD + + P+
Sbjct: 77 DSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPN 136
Query: 386 VLTVLLQLFDE 396
L V + E
Sbjct: 137 TLFVFDDVVQE 147
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.7 bits (60), Expect = 2.6
Identities = 9/80 (11%), Positives = 23/80 (28%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG 359
LG +G+GK+ + + I +++ G +
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66
Query: 360 GQLTKRLKKCPNAVVLFDEV 379
L + A ++ ++
Sbjct: 67 RALAPMYYRGSAAAIIVYDI 86
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.1 bits (61), Expect = 2.6
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 297 PLVFLFLGSSGIGKTELAKQLAFYIHRD 324
G SG GKT ++ L Y+
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCH 46
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.6 bits (60), Expect = 3.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 301 LFLGSSGIGKTELAKQLA 318
+ G G+GKT L K++
Sbjct: 4 IITGEPGVGKTTLVKKIV 21
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.9 bits (61), Expect = 3.3
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339
L G S GK+ LA +L + RD++ RLD +
Sbjct: 24 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.7 bits (60), Expect = 3.4
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGA 349
V F G G GKT++ Q + + + +S+ + A I
Sbjct: 36 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDT 86
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.7 bits (60), Expect = 3.7
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDM 334
V + G GK+ LA QLA I +
Sbjct: 31 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELP 66
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.4 bits (59), Expect = 3.8
Identities = 12/63 (19%), Positives = 18/63 (28%)
Query: 296 HPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLG 355
LV G S GKT LA QL+ + + E+ +
Sbjct: 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYY 80
Query: 356 HDD 358
+
Sbjct: 81 YLQ 83
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.6 bits (61), Expect = 3.9
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 12/77 (15%)
Query: 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR 331
G+ I+ I E +F+G SG GK+ L + +A + +
Sbjct: 11 GEVVVSKDINLDIHEGE----------FVVFVGPSGCGKSTLLRMIAGLETITSGD--LF 58
Query: 332 LDMSEYQEKHEVAKLIG 348
+ + + +G
Sbjct: 59 IGEKRMNDTPPAERGVG 75
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 27.6 bits (61), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFI 330
V F G +GIGKT L K ++ Y+ K E
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 27.7 bits (60), Expect = 4.1
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 266 LKDRI---VGQESAINIISAAIK---RKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAF 319
+++RI + E ++ ++ + K G + V + SG+GK+ +Q A
Sbjct: 1 MRERIREHLSSEESVGLLFSGCTGINDKTLGARGGE---VIMVTSGSGMGKSTFVRQQAL 57
Query: 320 YIHRDKKEAFIRLDMSEYQEKH 341
+ + E E+
Sbjct: 58 QWGTAMGKKVGLAMLEESVEET 79
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 4.3
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 299 VFLFLGSSGIGKTELAKQLAF--YIHRDKKEAFIRLDMSEYQEKHEVAKL 346
L G+SG GKT + Q + I D+ F+ + +
Sbjct: 28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSF 77
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 27.4 bits (59), Expect = 4.6
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIH-------RDKKEAFIRLDMSEYQEK 340
+ G GK++L LA + K +I + + +
Sbjct: 36 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR 84
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.0 bits (58), Expect = 5.4
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 301 LFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHE 342
LG GK+ L +LA + + R + E E
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE 52
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 27.3 bits (60), Expect = 5.7
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 304 GSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQE 339
G GIGK+ + +A + M+ ++
Sbjct: 13 GVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRT 48
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 26.6 bits (57), Expect = 5.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 299 VFLFLGSSGIGKTELAKQLA 318
+ L +G G GK+ A++
Sbjct: 4 IILTIGCPGSGKSTWAREFI 23
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 26.8 bits (58), Expect = 5.8
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 295 DHPLVFLFLGSSGIGKTELAKQLA--FYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG 352
D+ + +G SG+GK+ L + + K + Q + K
Sbjct: 2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61
Query: 353 YLGHDDGGQLTKRLKKCPNAVVLFDEVDKAH 383
G + ++T + +L ++ K
Sbjct: 62 --GQERYRRITSAYYRGAVGALLVYDIAKHL 90
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 26.9 bits (58), Expect = 5.9
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 297 PLVFLFLGSSGIGKTELAKQLA 318
PLV LG G GK ++
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIV 22
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 26.9 bits (58), Expect = 5.9
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 297 PLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341
P V LG G GK + + ++ L + +
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIV------RDFGWVHLSAGDLLRQE 44
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.9 bits (58), Expect = 6.0
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 301 LFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPG 352
G G+GKT L + + + Q + + G
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSG 56
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 27.0 bits (60), Expect = 6.0
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 12/77 (15%)
Query: 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR 331
G +A+N ++ IK E + LG SG GKT + +A + I
Sbjct: 17 GNFTAVNKLNLTIKDGE----------FLVLLGPSGCGKTTTLRMIAGLEEPTEGR--IY 64
Query: 332 LDMSEYQEKHEVAKLIG 348
+ + I
Sbjct: 65 FGDRDVTYLPPKDRNIS 81
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.1 bits (59), Expect = 6.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 291 WTDDDHPLVFLFLGSSGIGKTELAKQLAFYI 321
T + PL F G G GK+ + Q+ ++
Sbjct: 21 ETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL 51
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.8 bits (59), Expect = 6.4
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 272 GQESAINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIR 331
G AI I + R + + +G++G GKT +A + K +
Sbjct: 17 GAIHAIKGIDLKVPRGQ----------IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 332 LDMSEYQEKHE 342
+ H
Sbjct: 67 GQDITNKPAHV 77
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 26.8 bits (58), Expect = 6.9
Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 3/54 (5%)
Query: 297 PLVFLFLGSSGIGKTELAKQLA---FYIHRDKKEAFIRLDMSEYQEKHEVAKLI 347
PL + G+ GK + + H + + + + +
Sbjct: 3 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFM 56
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.5 bits (57), Expect = 7.2
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKH 341
+ + G S GK+ + + L + E ++ + E
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLP----EPWLAFGVDSLIEAM 43
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.5 bits (57), Expect = 7.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYIHR 323
+ F SG GKT L K+L +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCA 28
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.4 bits (57), Expect = 7.6
Identities = 10/86 (11%), Positives = 28/86 (32%)
Query: 295 DHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYL 354
+ ++ +G G+GK+ L Q I ++ + K+
Sbjct: 2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61
Query: 355 GHDDGGQLTKRLKKCPNAVVLFDEVD 380
G + +T+ + ++ ++
Sbjct: 62 GQERFRAVTRSYYRGAAGALMVYDIT 87
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.6 bits (58), Expect = 7.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKE 327
L G E++ +L Y+ + +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPK 45
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 26.7 bits (57), Expect = 7.9
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 299 VFLFLGSSGIGKTELAKQLAFYI 321
+ G GKT++ LA
Sbjct: 25 ITEMFGEFRTGKTQICHTLAVTC 47
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 8.0
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG 359
+ LG S +GK+ L + + +E+ I + + G +
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 360 GQLTKR-LKKCPNAVVLFD 377
L + A+V++D
Sbjct: 69 HSLAPMYYRGAQAAIVVYD 87
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.5 bits (57), Expect = 8.1
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG 359
+ LGS G+GK+ L Q I +K + I D Q + + + + G +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 360 GQLTKRLKKCPNAVVLFDEVDK 381
+ K L +
Sbjct: 65 TAMRDLYMKNGQGFALVYSITA 86
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 27.0 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 301 LFLGSSGIGKTELAKQLAFYI 321
L G SG GKTE K++ Y+
Sbjct: 125 LITGESGAGKTENTKKVIMYL 145
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 26.6 bits (58), Expect = 8.4
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 216 TVKDNSGHIPSDYAEDANIKQILQKYAEKYADLQREK 252
T+ +G + ++Q+++K+ E+ A +REK
Sbjct: 214 TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.6 bits (58), Expect = 8.7
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 276 AINIISAAIKRKENGWTDDDHPLVFLFLGSSGIGKTELAKQLAFYIHRDKKEAFI 330
+++ +S ++ E F+ LG +G GKT + +A + D +
Sbjct: 15 SLDNLSLKVESGE----------YFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.2 bits (56), Expect = 8.8
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 300 FLFLGSSGIGKTELAKQLAFYIHRDKKEAFIRLDMSEYQEKHEVAKLIGAPPGYLGHDDG 359
+ +G G+GK+ L Q + I D Q + G ++
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEF 66
Query: 360 GQLTKRLKKCPNAVVLFDEVDKAH 383
G + ++ + +L V
Sbjct: 67 GAMREQYMRTGEGFLLVFSVTDRG 90
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 27.0 bits (59), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 301 LFLGSSGIGKTELAKQLAFYI 321
L G SG GKTE K++ Y+
Sbjct: 95 LCTGESGAGKTENTKKVIQYL 115
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 27.0 bits (59), Expect = 9.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 301 LFLGSSGIGKTELAKQLAFYI 321
L G SG GKTE K++ Y+
Sbjct: 129 LITGESGAGKTENTKKVIQYL 149
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 26.0 bits (57), Expect = 9.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 252 KEAEERRKYPLEQRLKDRIVGQESAINIISAAIKRKEN 289
+ A R + +E+RL + I+ A N AA+K++E+
Sbjct: 97 QYARLRNEKTMEERLANEIM---DAANNTGAAVKKRED 131
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.0 bits (56), Expect = 9.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 293 DDDHPLVFLFLGSSGIGKTELAKQLA 318
+ D+ L +G+S +GKT + A
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYA 26
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.3 bits (57), Expect = 9.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 295 DHPLVFLFLGSSGIGKTELAKQLA 318
D + +G++G+GKT L ++
Sbjct: 3 DFLFKIVLIGNAGVGKTCLVRRFT 26
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 9.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 299 VFLFLGSSGIGKTELAKQLA 318
+ L G G GK+ +A+ LA
Sbjct: 6 ILLLSGHPGSGKSTIAEALA 25
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 26.6 bits (58), Expect = 9.6
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 301 LFLGSSGIGKTELAKQLAFYI 321
+ G SG GKT AK Y
Sbjct: 98 IVSGESGAGKTVSAKYAMRYF 118
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 27.0 bits (59), Expect = 9.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 301 LFLGSSGIGKTELAKQLAFYI 321
+ G SG GKTE +K++ ++
Sbjct: 90 IISGESGAGKTEASKKIMQFL 110
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.1 bits (56), Expect = 9.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 298 LVFLFLGSSGIGKTELAKQLA 318
V + G S +GK+ + + L
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLR 23
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.0 bits (56), Expect = 9.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 295 DHPLVFLFLGSSGIGKTELAKQLA 318
D+ + L LG SG+GKT +
Sbjct: 3 DYLIKLLALGDSGVGKTTFLYRYT 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.392
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,240,060
Number of extensions: 107220
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 201
Length of query: 607
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 516
Effective length of database: 1,158,166
Effective search space: 597613656
Effective search space used: 597613656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)