BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13081
(335 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|322786132|gb|EFZ12740.1| hypothetical protein SINV_14818 [Solenopsis invicta]
Length = 444
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 153/314 (48%), Positives = 212/314 (67%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G++YHGF +Q + NTI HHL AL K+C IE +E +++ CGRTD GVS
Sbjct: 92 RHILLKFYYLGWDYHGFTVQEDNCNTIEHHLFAALLKSCCIESRESANYHRCGRTDKGVS 151
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV++L IRSKL + + NELPY KMLN LP +I+ VAW PV +SARFDC +
Sbjct: 152 SFSQVISLDIRSKLAPEDQGNLSNELPYCKMLNRLLPTNIRCVAWCPVASNFSARFDCKY 211
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP+ LDIDAM+KAA+Y+VG HDFRN+CKM+V NG++NF+R V A V+ +
Sbjct: 212 RRYKYFFPRGNLDIDAMNKAAKYVVGDHDFRNICKMDVANGIINFKRTVIDAKVSFVNEQ 271
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ +++CE I SQ FLWHQIRC+M +L LVGQ E+PE+I +L+D E P+KP Y
Sbjct: 272 SMEKSTGYDMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEVILKLLDTETCPQKPQY 331
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRESK 301
M PLNL+H +++N+ W DE E+ + ++ L +DW+L +IK+TM+ M+ +
Sbjct: 332 NMAHQVPLNLWHCDYENIKWFVDENELLYTIKILQQDWALNTIKSTMIKNMLMELKNSVN 391
Query: 302 CTMGDLDINHLIEG 315
C D + L+ G
Sbjct: 392 CVNTDFQSDCLLLG 405
>gi|340724310|ref|XP_003400525.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus terrestris]
Length = 424
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 149/301 (49%), Positives = 211/301 (70%), Gaps = 1/301 (0%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G+NY+GF +Q S+DNTI HL +AL K+C IE +E S++ CGRTD GVS
Sbjct: 71 RHILLKFYYLGWNYNGFVVQESTDNTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVS 130
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV+++ +RSKL + ++ELPY K+LN LP +I+ +AW P +SARF+C F
Sbjct: 131 SFSQVISIDLRSKLNPEDQCKLEDELPYCKILNRLLPSNIRCIAWCPASSNFSARFNCKF 190
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP+ L+ID+M KA +Y +G HDFRN+CKM+V NGV N++R V A V ++
Sbjct: 191 RTYKYFFPRGNLNIDSMDKAVKYTIGEHDFRNICKMDVANGVTNYQRKVIDAKVCLYRRD 250
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ N S +++C+ I SQ FLWHQIRC+M VLFL+GQGNEKPEII +L+DIEKYPRKP Y
Sbjct: 251 FR-NISGYDVCQLIITSQAFLWHQIRCLMGVLFLIGQGNEKPEIILELLDIEKYPRKPQY 309
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRESK 301
+ PLNL++ E+D + W+ D+ E+ + ++ L DW+L ++K+ M+ M+ D +
Sbjct: 310 NLAHEIPLNLWYCEYDTMEWYIDKDELINTIKFLQRDWTLNTVKSVMIENMLSDLEDTTD 369
Query: 302 C 302
C
Sbjct: 370 C 370
>gi|307177137|gb|EFN66370.1| tRNA pseudouridine synthase 3 [Camponotus floridanus]
Length = 345
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 149/318 (46%), Positives = 216/318 (67%), Gaps = 1/318 (0%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G++YHGF +Q +++TI HHL AL K+C IE +E +++ CGRTD GVS
Sbjct: 17 RHILLKFYYLGWDYHGFTVQEDNNDTIEHHLFTALLKSCCIESRESANYHRCGRTDKGVS 76
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV++L IRS+L + + ELPY K+LN LP +I+ +AW PV +SARFDC +
Sbjct: 77 SFSQVISLDIRSRLEPENQHNLSEELPYCKILNRLLPTNIRCIAWCPVSPNFSARFDCKY 136
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP++ LDIDAM K+ +Y +G HDFRN+CKM+V NGV+NF+R V A V+ + QN
Sbjct: 137 RTYKYFFPKSNLDIDAMDKSVKYAIGDHDFRNICKMDVANGVINFKRTVIDAKVSMSNQN 196
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
V+ + +N+CE I SQ FLWHQIRC+M +L LVGQ E+PEII +L++IE P+KP Y
Sbjct: 197 VE-KITGYNMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEIILKLLNIETCPQKPQY 255
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRESK 301
M PLNL++ +++ + W D+ E+ + ++ L +DW+L +IK+TM+ M+ +
Sbjct: 256 NMAHEVPLNLWYCDYEGIEWFIDKNELINTIKTLQQDWALSTIKSTMIKNMLTKLENLAN 315
Query: 302 CTMGDLDINHLIEGEFSR 319
C D + L+ G S+
Sbjct: 316 CANTDFQSDCLLLGVRSK 333
>gi|350420811|ref|XP_003492633.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus impatiens]
Length = 424
Score = 320 bits (819), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 147/301 (48%), Positives = 210/301 (69%), Gaps = 1/301 (0%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G+NY+G+ +Q S+DNTI HL +AL K+C IE +E S++ CGRTD GVS
Sbjct: 71 RHILLKFYYLGWNYNGYVVQESTDNTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVS 130
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV+++ +RSKL + ++ELPY K+LN LP +I+ +AW P +SARF+C F
Sbjct: 131 SFSQVISIDLRSKLNPEDQCKLEDELPYCKILNRLLPSNIRCIAWCPASSNFSARFNCKF 190
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP+ L+ID+M KA +Y +G HDFRN+CKM+V NGV N++R V A V ++
Sbjct: 191 RTYKYFFPRGNLNIDSMDKAVKYTIGEHDFRNICKMDVANGVTNYQRKVIDAKVCLYRRD 250
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ N S +++C+ I SQ FLWHQIRC+M VLFL+GQGNEKPEII +L+DIEK PRKP Y
Sbjct: 251 FR-NISGYDVCQLIITSQAFLWHQIRCLMGVLFLIGQGNEKPEIILELLDIEKCPRKPQY 309
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRESK 301
+ PLNL++ E+D + W+ D+ E+ + ++ L DW+L ++K+ M+ M+ D +
Sbjct: 310 NLAHEIPLNLWYCEYDTMEWYIDKDELINTIKFLQRDWTLNTVKSVMIENMLTDLEDTTD 369
Query: 302 C 302
C
Sbjct: 370 C 370
>gi|332024452|gb|EGI64650.1| tRNA pseudouridine synthase 3 [Acromyrmex echinatior]
Length = 443
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 210/293 (71%), Gaps = 2/293 (0%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G++YHGF +Q + +TI HHL AL K+C IE +E S++ CGRTD GVS
Sbjct: 74 RHILLKFYYLGWDYHGFAVQEDNTDTIEHHLFAALLKSCCIESRESSNYHRCGRTDKGVS 133
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV++L +RS+L +++ +ELPY K+LN LP +I+ +AW PV +SARFDC F
Sbjct: 134 SFSQVISLDVRSRLEPENQDNLSDELPYCKILNRLLPANIRCIAWCPVSSIFSARFDCKF 193
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW-Q 180
R+Y+Y+FP+ LDI+AM KAA+Y++G HDFRN+CKM+V NGV+NF+R V A V S Q
Sbjct: 194 RSYRYFFPRGNLDIEAMDKAAKYVIGDHDFRNICKMDVANGVINFKRTVMDARVNSLNDQ 253
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
NV+ + +++CE I SQ FLWHQIRC+M +L L+GQ E+PEII +L+DIE P+KP
Sbjct: 254 NVE-KSTGYDMCELEITSQAFLWHQIRCLMGILLLIGQRKEEPEIILKLLDIETCPQKPQ 312
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
Y M PLNL++ +++++ W DE E+ + ++ L +DW+L +IK+TM+ M+
Sbjct: 313 YNMAHQVPLNLWYCDYESINWFMDENELLNTIKVLQQDWALNTIKSTMIKNML 365
>gi|307212020|gb|EFN87913.1| tRNA pseudouridine synthase 3 [Harpegnathos saltator]
Length = 368
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 150/318 (47%), Positives = 210/318 (66%), Gaps = 1/318 (0%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK+ Y G+NY GF +Q S+ TI HHL AL K+C IE +E S++ CGRTD GVS
Sbjct: 17 RHILLKLYYLGWNYDGFTVQEDSNATIEHHLFAALTKSCCIESRETSNYHRCGRTDKGVS 76
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+FCQV++L IRSKL + + ELPY K+LN LP +I+ +AW P+ +SARFDC +
Sbjct: 77 SFCQVISLDIRSKLEPEQQSNLSKELPYCKILNKLLPTNIRCIAWCPISSDFSARFDCKY 136
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP+ LDIDAM KA +Y++G DFRN+CKM+V NGV NF+R V A ++ Q
Sbjct: 137 RKYKYFFPRGNLDIDAMDKAVKYVIGEFDFRNICKMDVANGVTNFKRKVIDAKISMNNQA 196
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
V + ++ICE I SQ FLWHQIRC+M +L LVG+ E+PEII +L+DIE P+KP Y
Sbjct: 197 VD-KSTGYDICELEITSQAFLWHQIRCLMGILLLVGKKREEPEIISKLLDIETCPQKPQY 255
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRESK 301
M PLNL+++++ + W DE E+ + ++ L DW+L +IK+ M+ M+ + +
Sbjct: 256 NMAHEVPLNLWYSDYKDTEWIIDENELINTIKTLQRDWTLNTIKSIMIKNMLAELENIAN 315
Query: 302 CTMGDLDINHLIEGEFSR 319
T D + L+ G S+
Sbjct: 316 STNNDFQSDCLLLGAQSK 333
>gi|156537085|ref|XP_001602396.1| PREDICTED: tRNA pseudouridine synthase 3-like [Nasonia vitripennis]
Length = 421
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 204/294 (69%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G++Y GF Q + +TI ++L AL K+CLIE +E S++ CGRTD GVS
Sbjct: 71 RHIFLKFYYLGWDYQGFAAQEDTTSTIEYYLFAALTKSCLIESRETSNYHRCGRTDKGVS 130
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
AF QV++L IRS+L +++ +EL Y KMLN LP++I+ +WSP + SARFDC F
Sbjct: 131 AFSQVISLDIRSRLEPEKQDNLSDELHYCKMLNRLLPKNIRCFSWSPAHPEMSARFDCKF 190
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R+YKY+FP+ L+I+AM KAA+ VG+HDFRNLCKM+V NGVVNF R + +A VT +
Sbjct: 191 RSYKYFFPRGNLNIEAMDKAAKLTVGSHDFRNLCKMDVANGVVNFFRNIVNAQVTCIKRE 250
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
S +++CE +I+S FLWHQIRCIM +L LVG+ EKPE+I L+D+EK PRKP Y
Sbjct: 251 DPEKISGYDMCELSIKSNAFLWHQIRCIMGILLLVGREQEKPEVITDLLDVEKCPRKPQY 310
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKD 295
+ PLNL++ E+D W+ D+ E+ V++DL E+W+ +IK +M M+KD
Sbjct: 311 NLGHYIPLNLFYCEYDGTNWYTDKEELQRVIKDLQEEWTYAAIKCSMTRNMLKD 364
>gi|193666867|ref|XP_001946781.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 1
[Acyrthosiphon pisum]
gi|328702018|ref|XP_003241780.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 2
[Acyrthosiphon pisum]
Length = 402
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/296 (50%), Positives = 202/296 (68%), Gaps = 7/296 (2%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + KILY G++YHGF Q S+ TI + L +AL CLIE ++ S++ CGRTD GVS
Sbjct: 57 RHVVFKILYLGWDYHGFATQDVSEKTIEYELFRALTICCLIESRQTSNYHRCGRTDKGVS 116
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV++L +RS G++S+ ELPY KMLN LP+DI+VVAW PV + +SARFDC
Sbjct: 117 SFSQVISLTVRSN----GDDSE--ELPYCKMLNRLLPKDIRVVAWGPVKDDFSARFDCGS 170
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKYWFP+ LD+D M++A Q +VGTHDFRNLCKM+V NGVV F R +T A + +N
Sbjct: 171 RTYKYWFPRGDLDVDLMNQAIQQVVGTHDFRNLCKMDVANGVVQFYRRITSADIKICSEN 230
Query: 182 VQFNDSH-HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
QF+ + +++CE I + FLWHQIRCI+SVL LVG E P I + L++IE PRKP
Sbjct: 231 NQFSKNRDYDMCELTIVGKAFLWHQIRCIVSVLILVGCRKENPNIFKDLLNIENCPRKPQ 290
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDT 296
Y + PLNL+ +F+N+ W ++ +S V+ L W+ IKATMLGEM+K+T
Sbjct: 291 YCLASDLPLNLFDCQFENVNWVIEDESISEVITSLQCSWATHMIKATMLGEMLKNT 346
>gi|383863340|ref|XP_003707139.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Megachile
rotundata]
Length = 420
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 203/292 (69%), Gaps = 1/292 (0%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G++ +GF +Q ++DNTI H+ AL K+C IE +E S++ CGRTD GVS
Sbjct: 72 RHILLKFYYLGWDCNGFVVQENTDNTIEQHIFAALIKSCCIESRETSNYHRCGRTDKGVS 131
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV++L IRSKL + ++ELPY K+LN LP +I+ AW PV + SARFDC F
Sbjct: 132 SFSQVISLDIRSKLKPEDQNKLEDELPYCKILNRLLPSNIRCTAWCPVSDDVSARFDCKF 191
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP+ L+IDAM KA +Y++G HDFRN+CKM+V NGVVN+ R + A V+ QN
Sbjct: 192 RTYKYFFPRGNLNIDAMDKAVKYIIGEHDFRNICKMDVANGVVNYMRTIMSAEVSLYRQN 251
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ + S ++IC+ I SQ FLWHQIRC+M VL LVGQ EKPE+I +L+DI K PRKP Y
Sbjct: 252 SK-HISGYDICQLIITSQAFLWHQIRCLMGVLLLVGQEKEKPEVILELLDISKCPRKPQY 310
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
+ PLNL++ E++ W+ D+ E+ + ++ L +DW+L ++K+ M+ M+
Sbjct: 311 NLAHEVPLNLWYCEYEAKQWYIDQQELINTVKILQKDWTLNTVKSVMIENML 362
>gi|380027544|ref|XP_003697482.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Apis florea]
Length = 400
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 205/292 (70%), Gaps = 1/292 (0%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G+NY+GF +Q S +NTI HL +AL K+C IE +E S++ CGRTD GVS
Sbjct: 72 RHILLKFYYLGWNYNGFVVQESINNTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVS 131
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV++L IRSKL + ++ELPY KMLN LP +I+ +AW PVP +SARF+C F
Sbjct: 132 SFSQVISLDIRSKLNPEDQYKLEDELPYCKMLNRLLPSNIRCIAWCPVPNDFSARFNCKF 191
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP+ L+IDAM KA +Y++G HDFRN+CKM+V NGV N+ R V +A V Q+
Sbjct: 192 RTYKYFFPRGNLNIDAMDKAVKYIIGEHDFRNICKMDVANGVTNYIRKVINAEVCMYRQD 251
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ N S +++C+ I SQ FLWHQIRC+M VLFL+G+G E+ EI+ +L+DIE P+KP Y
Sbjct: 252 FR-NISGYDMCQLIITSQAFLWHQIRCLMGVLFLIGEGKEEAEIMLKLLDIENCPKKPQY 310
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
+ PLNL++ E+D W+ + E+ + ++ L +DW+L ++++ M+ M+
Sbjct: 311 NLAHEIPLNLWYCEYDAKEWYIHKDELFNTIKLLQKDWTLNTVRSVMIENML 362
>gi|328777716|ref|XP_393954.4| PREDICTED: tRNA pseudouridine synthase 3-like [Apis mellifera]
Length = 400
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 206/292 (70%), Gaps = 1/292 (0%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G++Y+GF +Q S DNTI HL +AL K+C IE +E S++ CGRTD GVS
Sbjct: 55 RHILLKFYYLGWDYNGFVVQESIDNTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVS 114
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
+F QV++L IRSKL + ++ELPY K+LN LP +I+ +AW PVP +SARF+C F
Sbjct: 115 SFSQVISLDIRSKLNPEDQYKLEDELPYCKILNRLLPSNIRCIAWCPVPNDFSARFNCKF 174
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP+ L+IDAM+KA +Y++G HDFRN+CKM+V NGV+N+ R V +A V Q+
Sbjct: 175 RTYKYFFPRGNLNIDAMNKAVKYIIGEHDFRNICKMDVANGVINYIRKVINAEVRMYRQD 234
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ N S +++ + I SQ FLWHQIRC+M VLFL+G+G E+ EI+ +L+DIE P+KP Y
Sbjct: 235 FR-NISGYDMYQLIITSQAFLWHQIRCLMGVLFLIGEGKEEAEIMLELLDIENCPKKPQY 293
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
+ PLNL++ E+D W+ + E+ + ++ L +DW+L ++++ M+ M+
Sbjct: 294 NLAHEIPLNLWYCEYDAKEWYIHKDELFNTIKLLQKDWTLNTVRSVMIENML 345
>gi|432923365|ref|XP_004080439.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Oryzias
latipes]
Length = 471
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 211/341 (61%), Gaps = 21/341 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G+ Y GF +Q ++DNT+ L +AL KT LI+D++ S++ CGRTD GVS
Sbjct: 75 RHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALLKTRLIQDRQSSNYHRCGRTDKGVS 134
Query: 62 AFCQVVTLKIRSK-------LTSPGE-------ESDDNELPYLKMLNNNLPRDIKVVAWS 107
AF QV+T+ +RS +T P + ++ +ELPY+KMLN LP+DI+++ +
Sbjct: 135 AFSQVITIDLRSTQFCGGLGVTVPEKVDPSIKSKAASSELPYVKMLNRVLPQDIRILDCA 194
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
PV E +SARFDC R Y+Y+FP+ LD+ M AA+ GTHDFRNLCKM+VGNGV+ F
Sbjct: 195 PVAEGFSARFDCQSRTYRYYFPRGSLDVALMEDAAKRYEGTHDFRNLCKMDVGNGVLQFE 254
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + A + W + +++ F ++ FL+HQ+RC+M+VL L+GQ E P+II
Sbjct: 255 RTILSATIRPMWSQQASSMDQYSLFVFEVKGLAFLYHQVRCMMAVLLLIGQKLEDPQIIS 314
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
QL+D+E PRKP Y M PL L+H F+ L+W D E+++V+ L + W ++KA
Sbjct: 315 QLLDVENNPRKPQYSMAVDYPLVLHHCHFEGLSWQQDTEELNYVMSSLQQHWIQSAVKAQ 374
Query: 288 MLGEMIKDTVRESKCTMGDLDINH--LIEGEFSRPGRILSE 326
+L EMI+D G + NH L+EG + R L E
Sbjct: 375 VLQEMIRDLK-----DRGGVSSNHCWLVEGSRQKKYRPLLE 410
>gi|357625661|gb|EHJ76033.1| putative pseudouridylate synthase [Danaus plexippus]
Length = 504
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/329 (44%), Positives = 208/329 (63%), Gaps = 15/329 (4%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
R + L I+Y G++YHG +Q S +TI H+L AL K+CLIE +E+S + CGRTD GV
Sbjct: 75 FRRVLLHIIYFGWDYHGLAVQEDSTHTIEHYLFNALVKSCLIESREQSQYHRCGRTDKGV 134
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE---KYSARF 117
SAF Q++++ +RSKL P +E+ Y K+LN PRDIK VAW P+P+ +SARF
Sbjct: 135 SAFGQIISISLRSKL-EPSSTDYSSEIQYCKILNRLFPRDIKAVAWMPIPDDRPDFSARF 193
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DC R YKY+FP++ L+I AM +A + L+G+HDFR+LCKM+VGNGV F R V A + +
Sbjct: 194 DCKGRQYKYYFPKSNLNITAMREACRQLIGSHDFRHLCKMDVGNGVTEFTRRVVSADIIA 253
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
++ + S + + I FLWHQIRCIM VL LVGQG+E P II +L+D+E PR
Sbjct: 254 LDKDCEQTTSMYALV---IEGNAFLWHQIRCIMGVLLLVGQGHESPGIIAELLDVEANPR 310
Query: 238 KPVYPMVRGEPLNLYHTEFD-NLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDT 296
KP Y M PLNL+ +D W YD+ E+ +++ +L DW+L ++K+T MIKD
Sbjct: 311 KPQYNMALDLPLNLFCCRYDVKSRWVYDDEELKYIITNLQADWTLYNVKST----MIKDA 366
Query: 297 VRESKCTMGDLDINHLI---EGEFSRPGR 322
+ + + DL +GE++ GR
Sbjct: 367 LEHLEGVLYDLSKEGKKCDRDGEYNDVGR 395
>gi|363742565|ref|XP_417852.3| PREDICTED: tRNA pseudouridine synthase 3 [Gallus gallus]
Length = 459
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 145/310 (46%), Positives = 199/310 (64%), Gaps = 21/310 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q ++ NTI L +AL+KT L++D++ S++ CGRTD GVS
Sbjct: 66 RHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVS 125
Query: 62 AFCQVVTLKIRSKLT-----------SPGEES-DDNELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV++L +RS L+ S G+ S + EL Y +LN LP DI+V+AW+PV
Sbjct: 126 AFGQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPV 185
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
+SARF CL R Y+Y+FP A LD+ MH AAQ VGTHDFRNLCKM+V NGV+NF+R
Sbjct: 186 EPDFSARFSCLKRTYRYFFPCADLDVALMHTAAQRYVGTHDFRNLCKMDVANGVINFQRT 245
Query: 170 VTHAGVTSAWQNVQFN-DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ A VT A + +C+F + Q FL+HQ+RC+M++LFL+GQ E PEII +
Sbjct: 246 ILSAQVTWADGGAESGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEIIDE 305
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L+D+EK PRKP Y M PL LY EF+N+ WHYD E V+H L + W+ ++
Sbjct: 306 LLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDREVQEFNVTH----LQQLWASYAV 361
Query: 285 KATMLGEMIK 294
K +L M++
Sbjct: 362 KTQVLHSMLR 371
>gi|317419455|emb|CBN81492.1| tRNA pseudouridine synthase 3 [Dicentrarchus labrax]
Length = 472
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 206/341 (60%), Gaps = 21/341 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G++Y GF +Q ++DNT+ L +AL KT LI+D++ S++ CGRTD GVS
Sbjct: 71 RHVALRLAYLGWSYQGFAVQENTDNTVEARLFEALLKTRLIQDRQSSNYHRCGRTDKGVS 130
Query: 62 AFCQVVTLKIRSKLTSPG--------------EESDDNELPYLKMLNNNLPRDIKVVAWS 107
AF QV+T+ +RS G ++ +ELPY+KMLN LP+DI+++ W+
Sbjct: 131 AFSQVITIDLRSTQFCGGLGVTLPENVDVRSKNKASGSELPYVKMLNRVLPQDIRILDWA 190
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
P E +SARFDC R Y+Y+FP+ LD+ M +AA+ GTHDFRNLCKM+VGNGV+ F
Sbjct: 191 PAAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAKRYEGTHDFRNLCKMDVGNGVLQFE 250
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + A V + + + F I+ FL+HQ+RC+M++L L+GQ E PEII
Sbjct: 251 RTILSASVKPVQPQHVSSTDQYELFMFEIKGLAFLYHQVRCMMALLLLIGQKLEAPEIIN 310
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
QL+D++ PRKP Y M PL LY F+ L+W + EV+HVL L + W+ ++K
Sbjct: 311 QLMDVQSNPRKPQYSMAVDYPLVLYDCHFEGLSWQQENEEVNHVLSALQQHWTQSAVKTH 370
Query: 288 MLGEMIKDTVRESKCTMGDLDINH--LIEGEFSRPGRILSE 326
+L MI+ +G + NH L+EG R R L E
Sbjct: 371 VLHGMIRGLE-----AIGGVSSNHCWLVEGSRQRNYRPLLE 406
>gi|170068141|ref|XP_001868750.1| pseudouridylate synthase [Culex quinquefasciatus]
gi|167864259|gb|EDS27642.1| pseudouridylate synthase [Culex quinquefasciatus]
Length = 470
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 197/326 (60%), Gaps = 35/326 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L+ Y G+++ G+ Q S NTI HHL AL + CLIE +E S++ CGRTD GVS
Sbjct: 74 RHILLRFFYLGWDFQGYATQEDSANTIEHHLFNALTRVCLIESRESSNYHRCGRTDKGVS 133
Query: 62 AFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARF 117
AF QVV+L +RSK + ES NEL Y ++LN LP +I+ VAW P YSARF
Sbjct: 134 AFHQVVSLDVRSKFPPESQLAPESLQNELNYCQLLNRVLPAEIRCVAWMPTANPNYSARF 193
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DC R Y+Y+FP+ LD+DAM K ++LVG+HDFRNLCKM+VGNGVV F+R V +A +
Sbjct: 194 DCRSRTYRYFFPRGSLDVDAMRKGCEFLVGSHDFRNLCKMDVGNGVVTFQRNVHYAVIRD 253
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
+ ++ DS +++ F +R + FLWHQ+RCIM++L LVGQG E P +I++L+D+EK PR
Sbjct: 254 SLKDG--GDSSYDMLYFELRGKAFLWHQVRCIMAILILVGQGREDPTVIRELLDVEKNPR 311
Query: 238 KPVYPMVRGEPLNLYHTEFDN-----------------------------LTWHYDEIEV 268
KP Y + PLNLY + + W Y+E +
Sbjct: 312 KPQYSLANDVPLNLYECLYKSKGSFDPKVFDKNGPVPEEDQEEDEGESDLREWVYEEESL 371
Query: 269 SHVLRDLHEDWSLLSIKATMLGEMIK 294
+ + +L W+ SI++TM EM+K
Sbjct: 372 TRTIEELQALWASNSIRSTMCREMLK 397
>gi|47214586|emb|CAG00940.1| unnamed protein product [Tetraodon nigroviridis]
Length = 412
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 191/307 (62%), Gaps = 14/307 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G+ Y GF +Q ++DNT+ L +AL KTCLI+D++ S++ CGRTD GVS
Sbjct: 73 RHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQDRQSSNYHRCGRTDKGVS 132
Query: 62 AFCQVVTLKIRSKLTSPG--------------EESDDNELPYLKMLNNNLPRDIKVVAWS 107
AF QV+T++ RS G ++ +ELPY+KMLN LP DI++ W+
Sbjct: 133 AFSQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKMLNRVLPHDIRIWNWA 192
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
P E +SARFDC R Y+Y+FP+ L+++ M AA+ GTHDFRNLCKM+VGNGV+ F
Sbjct: 193 PAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDFRNLCKMDVGNGVLQFE 252
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + + VT + ++I F +R FL+HQ+RC+M++L L+GQ E PEII
Sbjct: 253 RTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALLLLIGQKLEAPEIIN 312
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
QL+D++ PRKP Y M PL LYH F+ L W E +HVL L W+ ++++
Sbjct: 313 QLLDVQSNPRKPQYSMAVDYPLVLYHCHFEGLDWQQSNDEANHVLSTLQHHWTQSAVRSH 372
Query: 288 MLGEMIK 294
+L MIK
Sbjct: 373 VLHGMIK 379
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 197/308 (63%), Gaps = 17/308 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q ++ NTI L +AL+KT L++ ++ S++ CGRTD GVS
Sbjct: 64 RHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRLVDSRQTSNYHRCGRTDKGVS 123
Query: 62 AFCQVVTLKIRSKLT-----------SPGEES-DDNELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV++L +RS L+ S G+ S + EL Y +LN LP DI+V+AW+PV
Sbjct: 124 AFGQVISLDLRSNLSKEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPV 183
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
+SARF CL R Y+Y+FP A LD+ M AAQ VGTHDFRNLCKM+V NGV+NF+R
Sbjct: 184 EPDFSARFSCLKRTYRYFFPCADLDVALMQAAAQRYVGTHDFRNLCKMDVANGVINFQRT 243
Query: 170 VTHAGVTSAWQNVQFNDSHHN---ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
+ A VT W + + +C+F + Q FL+HQ+RC+M++LFL+GQ E PEII
Sbjct: 244 ILSAQVT--WVDGGAEGGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEII 301
Query: 227 QQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKA 286
+L+D+EK PRKP Y M PL LY EF+N+ WHYD+ + L + W+ ++K
Sbjct: 302 DELLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDQEVQEFNITHLQQLWASYAVKT 361
Query: 287 TMLGEMIK 294
+L +M++
Sbjct: 362 QVLHDMLR 369
>gi|402895728|ref|XP_003910970.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Papio anubis]
Length = 481
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 210/337 (62%), Gaps = 18/337 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI AM AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTVRESKCTMGDLDINHLIEGEFSRPGRI 323
L M++ D+V C +G ++ + E E +P I
Sbjct: 362 LYSMLQGLDSV-AVPCGIGP-KMDRMTEWENVKPSVI 396
>gi|158298322|ref|XP_318500.4| AGAP010807-PA [Anopheles gambiae str. PEST]
gi|157014345|gb|EAA13705.4| AGAP010807-PA [Anopheles gambiae str. PEST]
Length = 485
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 140/315 (44%), Positives = 195/315 (61%), Gaps = 23/315 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L+ Y G++Y GF Q S TI HH+ AL+K CLIE +E S++ CGRTD GVS
Sbjct: 74 RHILLRFYYLGWDYQGFAAQEDSIETIEHHMFAALKKVCLIESRETSNYNRCGRTDKGVS 133
Query: 62 AFCQVVTLKIRSKLTSPGEESD----DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSAR 116
AF QV++L +RSK +P + D NEL Y MLN LP +I+ +AW P V YSAR
Sbjct: 134 AFHQVISLDVRSKF-APELQLDANNLTNELDYCAMLNRVLPEEIRCLAWMPMVNPAYSAR 192
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
FDC R Y+Y+FP+ L+I AM ++A+YLVG HDFRNLCKM+VGNGVV+F R + +
Sbjct: 193 FDCRSRTYRYFFPRGDLNITAMEESARYLVGAHDFRNLCKMDVGNGVVSFVRSIDAISIK 252
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+ ++ + + S +++ ++ + FLWHQ+RCIM+VL LVGQG EKP +++ L+D+E+ P
Sbjct: 253 PSQRDSERDGSSYDMMYLELQGKAFLWHQVRCIMAVLLLVGQGREKPSVVKDLLDVEQNP 312
Query: 237 RKPVYPMVRGEPLNLYHTEFDNLT-----------------WHYDEIEVSHVLRDLHEDW 279
KP Y M PLNLY +F+ + W Y E ++ + DL W
Sbjct: 313 CKPQYSMASDVPLNLYDCQFNEKSGESNEEESMGGESDLSDWIYKEEDLRRTISDLQGFW 372
Query: 280 SLLSIKATMLGEMIK 294
S+K TM+ EM+K
Sbjct: 373 MKHSVKTTMVREMLK 387
>gi|348508841|ref|XP_003441961.1| PREDICTED: tRNA pseudouridine synthase 3-like [Oreochromis
niloticus]
Length = 467
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 145/342 (42%), Positives = 205/342 (59%), Gaps = 22/342 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G+ Y GF +Q ++DNT+ L +AL KT LI+D++ S++ CGRTD GVS
Sbjct: 74 RHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALLKTRLIQDRQSSNYHRCGRTDKGVS 133
Query: 62 AFCQVVTLKIRSK---------------LTSPGEESDDNELPYLKMLNNNLPRDIKVVAW 106
AF QV+T+ +RS +++ S +ELPY+KMLN LP+DI+V+ W
Sbjct: 134 AFSQVITIDLRSTQFCAGLGITLPENVDVSTKATSSATSELPYVKMLNRVLPQDIRVLDW 193
Query: 107 SPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
+PV E +SARFDC R Y+Y+FP+ LD+ M +AA+ GTHDFRNLCKM+VGNGV+ F
Sbjct: 194 APVAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAKRYEGTHDFRNLCKMDVGNGVLQF 253
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
R + A V A + +++ F I+ FL+HQ+RC+M+VL L+GQ E +II
Sbjct: 254 ERTILSATVKPAQPQHASSTDQYDLFIFEIKGLAFLYHQVRCMMAVLLLIGQKLEALDII 313
Query: 227 QQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKA 286
QL+D+E PRKP Y M PL LY F+ L+W + E VL L + W+ ++KA
Sbjct: 314 NQLLDVENNPRKPQYSMAVDYPLVLYDCHFEGLSWTRESEEGGFVLAALQQHWTQSTVKA 373
Query: 287 TMLGEMIKDTVRESKCTMGDLDINH--LIEGEFSRPGRILSE 326
+L MI+ G + NH L+EG R R L E
Sbjct: 374 HVLQGMIQGLE-----DRGAVSSNHCWLVEGSRQRNYRPLLE 410
>gi|440894412|gb|ELR46876.1| tRNA pseudouridine synthase 3 [Bos grunniens mutus]
Length = 481
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 198/310 (63%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 63 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESD-----------DNELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS + G +S+ E+ Y +LN LP DI+V+AW+PV
Sbjct: 123 AFGQVISLDLRSHIPK-GRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 TSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V QN+ +C+F + Q FL+HQ+RC+M+VLFL+GQG EKPE+I +
Sbjct: 242 LSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAV 357
Query: 285 KATMLGEMIK 294
K ML M++
Sbjct: 358 KTQMLYSMLQ 367
>gi|296471772|tpg|DAA13887.1| TPA: tRNA pseudouridine synthase 3 [Bos taurus]
Length = 481
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 198/310 (63%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 63 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESD-----------DNELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS + G +S+ E+ Y +LN LP DI+V+AW+PV
Sbjct: 123 AFGQVISLDLRSHIPK-GRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 TSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V QN+ +C+F + Q FL+HQ+RC+M+VLFL+GQG EKPE+I +
Sbjct: 242 LSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAV 357
Query: 285 KATMLGEMIK 294
K ML M++
Sbjct: 358 KTQMLYSMLQ 367
>gi|444731902|gb|ELW72237.1| tRNA pseudouridine synthase 3 [Tupaia chinensis]
Length = 479
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 139/308 (45%), Positives = 199/308 (64%), Gaps = 20/308 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q ++ NT+ L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYLGWGYQGFASQENTSNTVEEQLFEALTKTRLVESRQTSNYHRCGRTDRGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD---------NELPYLKMLNNNLPRDIKVVAWSPVPEK 112
AF QV++L +RS+L G S+D E+ Y +LN LP DI+V+AW+PV
Sbjct: 123 AFGQVISLDLRSQLPR-GRGSEDVHVEGTDTAQEIRYTHILNRVLPPDIRVLAWAPVEPG 181
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+SARF CL R Y+Y+FP+A LD+++M+ AAQ VGTHDFRN CKM+V NGVVNF+R V
Sbjct: 182 FSARFSCLERTYRYFFPRADLDVESMNSAAQKYVGTHDFRNFCKMDVANGVVNFQRTVLS 241
Query: 173 AGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
A V Q+ + +C+F + Q FL+HQ+RC+M+VLFL+GQG E+PE+I +L+
Sbjct: 242 AQVQRVGQSPGEHTQQAPFQLCQFQVTGQAFLYHQVRCMMAVLFLIGQGLERPEVIDELL 301
Query: 231 DIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIKA 286
DIE P+KP Y M PL LY F+N+ W YD E+ ++H L + W+ +++A
Sbjct: 302 DIESNPQKPQYSMAVEFPLVLYDCTFENIRWVYDREAQELNITH----LQQLWAKHAVQA 357
Query: 287 TMLGEMIK 294
ML +++
Sbjct: 358 HMLYSLLQ 365
>gi|77735971|ref|NP_001029684.1| tRNA pseudouridine(38/39) synthase [Bos taurus]
gi|119391067|sp|Q3SX07.1|PUS3_BOVIN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus]
Length = 481
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 198/310 (63%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 63 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESD-----------DNELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS + G +S+ E+ Y +LN LP DI+V+AW+PV
Sbjct: 123 AFGQVISLDLRSHIPK-GRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 TSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V QN+ +C+F + Q FL+HQ+RC+M+VLFL+GQG EKPE+I +
Sbjct: 242 LSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAV 357
Query: 285 KATMLGEMIK 294
K ML M++
Sbjct: 358 KTQMLYSMLQ 367
>gi|426251725|ref|XP_004019572.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Ovis aries]
Length = 481
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 196/310 (63%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 63 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS G +S+D E+ Y +LN LP DI+V+AW+PV
Sbjct: 123 AFGQVISLDLRSHFPK-GRDSEDFNLKDEVNDVATEIRYTHILNRVLPPDIRVLAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R +
Sbjct: 182 TSFSARFSCLERTYRYFFPCANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V QN+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPE+I +
Sbjct: 242 LSAQVQRVGQNLAEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEVIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAV 357
Query: 285 KATMLGEMIK 294
K ML M++
Sbjct: 358 KTQMLYSMLQ 367
>gi|410972303|ref|XP_003992599.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Felis catus]
Length = 480
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 143/309 (46%), Positives = 196/309 (63%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFPKDRASEDCNLKDEVSDAAKEIRYTHILNRVLPPDIRVLAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI AM+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPRADLDIVAMNDAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q++ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 242 SAQVQLVGQSLDKERWQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++K
Sbjct: 302 LNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAVK 357
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 358 THMLYSMLQ 366
>gi|355567201|gb|EHH23580.1| hypothetical protein EGK_07068 [Macaca mulatta]
gi|355752776|gb|EHH56896.1| hypothetical protein EGM_06391 [Macaca fascicularis]
gi|380816966|gb|AFE80357.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|383422019|gb|AFH34223.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|384949702|gb|AFI38456.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 196/306 (64%), Gaps = 14/306 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 122 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVE 180
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI AM AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 181 PSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 240
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 241 LSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 301 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 360
Query: 289 LGEMIK 294
L M++
Sbjct: 361 LYSMLQ 366
>gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Callithrix jacchus]
Length = 477
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 138/302 (45%), Positives = 193/302 (63%), Gaps = 9/302 (2%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN-------ELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
AF QV++L +RS+ + D N E+ Y +LN LP DI+++AW+PV +S
Sbjct: 122 AFGQVISLDLRSQFPRRRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWAPVEPSFS 181
Query: 115 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
ARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 182 ARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQ 241
Query: 175 VTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L++I
Sbjct: 242 VQPVGQSPDEERWQVPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNI 301
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
EK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K ML M
Sbjct: 302 EKNPQKPQYSMAVEFPLVLYDCKFENVEWIYDQEAQEFNITHLQQLWANHAVKTHMLYSM 361
Query: 293 IK 294
++
Sbjct: 362 LQ 363
>gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 196/306 (64%), Gaps = 14/306 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 122 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVE 180
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI AM AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 181 PSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 240
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 241 LSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 301 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 360
Query: 289 LGEMIK 294
L M++
Sbjct: 361 LYSMLQ 366
>gi|57085889|ref|XP_536533.1| PREDICTED: tRNA pseudouridine synthase 3 [Canis lupus familiaris]
Length = 480
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 144/310 (46%), Positives = 197/310 (63%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTNNTIEEKLFDALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRVLAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R V
Sbjct: 182 SFSARFSCLERTYRYFFPRADLDIITMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTVL 241
Query: 172 HAGVTSAWQNV---QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q++ Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 FAQVELVGQSLDKEQWQEPFQ-LCQFEVVGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 301 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDREVQEFNVTH----LQQLWANHAV 356
Query: 285 KATMLGEMIK 294
K ML M++
Sbjct: 357 KTHMLYSMLQ 366
>gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus]
Length = 481
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 141/309 (45%), Positives = 196/309 (63%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 64 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 123
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 124 AFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEP 183
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 243
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 244 CAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 303
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++I+K P+KP Y M PL LY +F+N W YD E V+H L + W+ ++K
Sbjct: 304 LNIQKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVQEFNVTH----LQQLWANHAVK 359
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 360 THMLYSMLQ 368
>gi|350588615|ref|XP_003482688.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa]
Length = 479
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 142/309 (45%), Positives = 195/309 (63%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+++ +C+F + Q FL+HQ+RC+M+VLFL+GQG EKPE+I +L
Sbjct: 242 SAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++K
Sbjct: 302 LNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAVK 357
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 358 TQMLYSMLQ 366
>gi|227499255|ref|NP_075781.3| tRNA pseudouridine(38/39) synthase [Mus musculus]
gi|52783242|sp|Q9JI38.2|PUS3_MOUSE RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus]
gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus]
Length = 481
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 141/309 (45%), Positives = 196/309 (63%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 64 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 123
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 124 AFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEP 183
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 243
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 244 CAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 303
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++I+K P+KP Y M PL LY +F+N W YD E V+H L + W+ ++K
Sbjct: 304 LNIQKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVQEFNVTH----LQQLWANHAVK 359
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 360 THMLYSMLQ 368
>gi|348573933|ref|XP_003472745.1| PREDICTED: tRNA pseudouridine synthase 3-like [Cavia porcellus]
Length = 480
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/309 (46%), Positives = 200/309 (64%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q ++DNTI L +A+ KT LIE ++ SS+ CGRTD GVS
Sbjct: 63 RRVALRIAYLGWGYQGFASQENTDNTIEEKLFEAMTKTRLIESRQTSSYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSK---------LTSPGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ L E SDD E+ Y +LN LP DI+V+AW+PV
Sbjct: 123 AFGQVISLDLRSQFPRGKDSEDLNLKNEVSDDAKEIRYTHILNRVLPPDIRVLAWAPVEP 182
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 183 SFSARFSCLERTYRYFFPLADLDIVRMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 242
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q++ + +C+F + Q FL+HQ+RC+M+VLFL+GQG E+P++I +L
Sbjct: 243 SAEVRLVGQSLCAESWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEEPQVIDEL 302
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++K
Sbjct: 303 LNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDHEVQEFNVTH----LQQLWANHAVK 358
Query: 286 ATMLGEMIK 294
+ ML M++
Sbjct: 359 SHMLYNMLQ 367
>gi|417401673|gb|JAA47712.1| Putative pseudouridylate synthase [Desmodus rotundus]
Length = 480
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 198/309 (64%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ +++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTANYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSYFPKDRDSEDLNIKDGVGDAAKEIRYTHILNRVLPADIRVLAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI+AM+ AA VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPRADLDIEAMNCAAHKYVGTHDFRNLCKMDVANGVINFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q++ + + +C+F + Q FL+HQ+RC+M+VLFL+GQG E+PEII +L
Sbjct: 242 SAQVKLVGQSLAEDGWQAPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEEPEIIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
+++EK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++K
Sbjct: 302 LNVEKNPQKPQYSMAVEFPLVLYDCKFENIPWVYDREVQEFNVAH----LQQQWADQAVK 357
Query: 286 ATMLGEMIK 294
+L M++
Sbjct: 358 THLLYSMLQ 366
>gi|345317522|ref|XP_001519338.2| PREDICTED: tRNA pseudouridine synthase 3-like [Ornithorhynchus
anatinus]
Length = 734
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 197/303 (65%), Gaps = 10/303 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT LIE ++ +++ CGRTD GVS
Sbjct: 61 RHVALRIAYLGWGYQGFASQENTNNTIEERLFEALTKTRLIERRQTANYHRCGRTDKGVS 120
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN---------ELPYLKMLNNNLPRDIKVVAWSPVPEK 112
AF QV++L +RS+ G+E + + E+ Y +LN LP DI+V+AW+PV
Sbjct: 121 AFGQVISLDLRSQTVRGGQEEEGSKDRMDARTAEIRYTHILNRVLPPDIRVLAWAPVGSG 180
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+SARF+CL R Y+Y+FP+A LD++AM +AAQ VGTHDFRNLCKM+V NGV +F+R +
Sbjct: 181 FSARFNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNLCKMDVANGVTSFQRTILS 240
Query: 173 AGVTSAWQNVQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
A V Q+ + + +C+F + Q FL+HQ+RC+M++LFLVGQ E PE+I +L+D
Sbjct: 241 AQVRRVDQSEETDRRDPFRLCQFEVTGQAFLYHQVRCMMAILFLVGQRMEGPEVIDELLD 300
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGE 291
+EK PRKP Y M PL LY +F+ L W YD +R L + W+ +++ +L
Sbjct: 301 VEKNPRKPQYSMAVELPLVLYDCQFEKLEWIYDREVQEFNVRHLQQLWASHAVQTQLLFS 360
Query: 292 MIK 294
M++
Sbjct: 361 MLQ 363
>gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca]
Length = 479
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 197/310 (63%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS G S+D E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFLK-GRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRVLAWAPVE 180
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 181 PSFSARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 240
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q++ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 241 LSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 301 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENIQWIYDREVQEFNVTH----LQQLWANHAV 356
Query: 285 KATMLGEMIK 294
K +L M++
Sbjct: 357 KTHVLYSMLQ 366
>gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda
melanoleuca]
Length = 480
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 197/310 (63%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS G S+D E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFLK-GRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRVLAWAPVE 180
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 181 PSFSARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 240
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q++ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 241 LSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 301 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENIQWIYDREVQEFNVTH----LQQLWANHAV 356
Query: 285 KATMLGEMIK 294
K +L M++
Sbjct: 357 KTHVLYSMLQ 366
>gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pongo abelii]
Length = 481
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 196/306 (64%), Gaps = 14/306 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G++S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GKDSEDFNVKGEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAIEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK 294
L M++
Sbjct: 362 LYSMLQ 367
>gi|403262406|ref|XP_003923581.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Saimiri boliviensis
boliviensis]
Length = 477
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 197/309 (63%), Gaps = 23/309 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ +++ CGRTD GVS
Sbjct: 62 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTANYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDD--------NELPYLKMLNNNLPRDIKVVAWSPVPEKY 113
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV +
Sbjct: 122 AFGQVISLDLRSQFPR-GRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 180
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R + A
Sbjct: 181 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 240
Query: 174 GVT--------SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
V WQ V F +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEI
Sbjct: 241 QVQLVGQSPGEERWQ-VPF-----QLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEI 294
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIK 285
I +L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K
Sbjct: 295 IDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVK 354
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 355 THMLYSMLQ 363
>gi|224083654|ref|XP_002193509.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Taeniopygia guttata]
Length = 462
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 193/300 (64%), Gaps = 9/300 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q ++ NTI L +AL+KT L++D++ S++ CGRTD GVS
Sbjct: 66 RHVALRIAYLGWGYQGFASQENTPNTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVS 125
Query: 62 AFCQVVTLKIRS------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 115
AF QV++L +RS +L G E EL Y +LN LP DI+V+AW+PV ++SA
Sbjct: 126 AFGQVISLDLRSSLPEGQQLNGHGGEGQQEELRYTHILNRVLPPDIRVLAWAPVGPEFSA 185
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RF CL R Y+Y+FP A LD+ M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V
Sbjct: 186 RFSCLSRTYRYFFPCAQLDVALMDTAAQRYVGTHDFRNLCKMDVANGVLNFQRTILRARV 245
Query: 176 T--SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
T S + D +C+F + Q FL+HQ+RC+M+VLFL+GQG E P++I +L+++E
Sbjct: 246 TRVSGGGEARPRDPFQ-LCQFEVTGQAFLYHQVRCMMAVLFLIGQGMESPDVIDELLNVE 304
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
K PRKP Y M PL LY EF +L W YD + L + W+ ++K +L +M+
Sbjct: 305 KNPRKPQYSMAVEFPLVLYDCEFPDLQWLYDPEVQGFNVTHLQQLWASHAVKTHVLRDML 364
>gi|47208381|emb|CAF93145.1| unnamed protein product [Tetraodon nigroviridis]
Length = 409
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 189/306 (61%), Gaps = 15/306 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G+ Y GF +Q ++DNT+ L +AL KTCLI+D++ S++ CGRTD GVS
Sbjct: 73 RHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQDRQSSNYHRCGRTDKGVS 132
Query: 62 AFCQVVTLKIRSKLTSP-------------GEESDDNELPYLKMLNNNLPRDIKVVAWSP 108
AF QV ++S T P ++ +ELPY+KMLN LP DI++ W+P
Sbjct: 133 AFSQVTA--VQSLHTPPFSFKLPENVDADKKSQTAVSELPYVKMLNRVLPHDIRIWNWAP 190
Query: 109 VPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
E +SARFDC R Y+Y+FP+ L+++ M AA+ GTHDFRNLCKM+VGNGV+ F R
Sbjct: 191 AAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDFRNLCKMDVGNGVLQFER 250
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ + VT + ++I F +R FL+HQ+RC+M++L L+GQ E PEII Q
Sbjct: 251 TILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALLLLIGQKLEAPEIINQ 310
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L+D++ PRKP Y M PL LYH F+ L W E +HVL L W+ ++++ +
Sbjct: 311 LLDVQSNPRKPQYSMAVDYPLVLYHCHFEGLDWQQSNDEANHVLSTLQHHWTQSAVRSHV 370
Query: 289 LGEMIK 294
L MIK
Sbjct: 371 LHGMIK 376
>gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus]
Length = 481
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 196/309 (63%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 64 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 123
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 124 AFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEP 183
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV++F+R +
Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVIDFQRTIL 243
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 244 CAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 303
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++I+K P+KP Y M PL LY +F+N W YD E V+H L + W+ ++K
Sbjct: 304 LNIQKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVQEFNVTH----LQQLWANHAVK 359
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 360 THMLYSMLQ 368
>gi|426370989|ref|XP_004052438.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Gorilla gorilla
gorilla]
Length = 481
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 195/306 (63%), Gaps = 14/306 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANVAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVRQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQKFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK 294
L M++
Sbjct: 362 LYSMLQ 367
>gi|355714592|gb|AES05053.1| pseudouridylate synthase 3 [Mustela putorius furo]
Length = 479
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 196/310 (63%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS G S+D E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFLK-GRASEDCNVKDDVYDAAKEIRYTHILNRVLPPDIRVLAWAPVE 180
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 181 PSFSARFSCLERTYRYFFPRADLDILTMNHAAQKYVGTHDFRNLCKMDVANGVINFQRTI 240
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 241 LSAQVQLVGQTLDEETWQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L+++EK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 301 LLNVEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAV 356
Query: 285 KATMLGEMIK 294
K ML M++
Sbjct: 357 KTHMLYSMLQ 366
>gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus]
gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus]
gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus]
Length = 479
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/309 (45%), Positives = 193/309 (62%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + D N E+ Y +LN LP DI+V+AW+P
Sbjct: 122 AFGQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRVLAWAPAEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPCADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTIL 241
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V + Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 242 SAQVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++IEK P+KP Y M PL LY +F+N W YD E V+H L + W+ ++K
Sbjct: 302 LNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVHEFNVTH----LQQLWANHAVK 357
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 358 THMLYSMLQ 366
>gi|395520653|ref|XP_003764440.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Sarcophilus
harrisii]
Length = 506
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 142/315 (45%), Positives = 198/315 (62%), Gaps = 30/315 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 93 RHVALRIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 152
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+L + D + E+ Y +LN LP DI+V+AW+PV
Sbjct: 153 AFGQVISLNLRSQLIGSKKPEDQSLKDSINDTVEEIRYTHILNRVLPPDIRVLAWAPVEP 212
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI+AM+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 213 SFSARFSCLERTYRYFFPCADLDIEAMNDAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 272
Query: 172 HAGVTSAWQNVQFNDSHH--------NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
A V Q V D +C+F + Q FL+HQ+RC+M++LFL+GQ EKP
Sbjct: 273 SANV----QLVALRDLEEKLQQQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQRMEKP 328
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDW 279
EII +L++IEK P+KP Y M PL L+ +F+N+ W YD E V+H L + W
Sbjct: 329 EIIDELLNIEKNPQKPQYSMAVEFPLVLHDCKFENIKWIYDQEVQEFNVTH----LQQLW 384
Query: 280 SLLSIKATMLGEMIK 294
+ ++K ML M++
Sbjct: 385 ANYAVKTHMLYSMLQ 399
>gi|334330487|ref|XP_001371991.2| PREDICTED: tRNA pseudouridine synthase 3-like [Monodelphis
domestica]
Length = 576
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 199/312 (63%), Gaps = 24/312 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 67 RHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 126
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+L + D N E+ Y +LN LP DI+V+AW+ V
Sbjct: 127 AFGQVISLNLRSQLPRDKDPEDKNLKDTVNDSVEEICYTHILNRVLPPDIRVLAWATVES 186
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI+AM+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 187 SFSARFSCLERTYRYFFPCANLDIEAMNDAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 246
Query: 172 HAGVT-----SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
A V S + +Q +S +C+F + Q FL+HQ+RC+M++LFL+GQ EK EII
Sbjct: 247 SAKVQLVAFGSPEEKLQQQESFQ-LCQFEVIGQAFLYHQVRCMMAILFLIGQRMEKAEII 305
Query: 227 QQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLL 282
+L++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+
Sbjct: 306 DELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWASY 361
Query: 283 SIKATMLGEMIK 294
++K ML M++
Sbjct: 362 AVKTHMLYSMLQ 373
>gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 1 [Nomascus
leucogenys]
Length = 481
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 195/306 (63%), Gaps = 14/306 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G ES+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRESEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGVVNF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVVNFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPE+I +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPELIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK 294
L M++
Sbjct: 362 LYSMLQ 367
>gi|157106978|ref|XP_001649570.1| pseudouridylate synthase [Aedes aegypti]
gi|108879706|gb|EAT43931.1| AAEL004663-PA [Aedes aegypti]
Length = 467
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 196/325 (60%), Gaps = 34/325 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L+ Y G++Y G+ Q S TI H L AL + CLIE++E S++ CGRTD GVS
Sbjct: 74 RHILLRFYYLGWDYQGYASQEDSARTIEHLLFNALTRVCLIENRETSNYHRCGRTDKGVS 133
Query: 62 AFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARF 117
AF QVV+L +RSK + ES NE+ Y ++LN LP+DI+ VAW P V YSARF
Sbjct: 134 AFHQVVSLDVRSKFAPENQLEPESIANEINYCQLLNRVLPQDIRCVAWMPMVNPNYSARF 193
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DC R Y+Y+FP+ L+IDAM +A +LVG HDFRNLCKM+VGNGVV F R +++ +
Sbjct: 194 DCRSRTYRYFFPRGSLNIDAMKEACTFLVGAHDFRNLCKMDVGNGVVTFTRRISYVSIED 253
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
+ + + +S +++ +R + FLWHQ+RCIM+VLFLVG+G E+P ++++L+D+ K P
Sbjct: 254 SQSDAK--ESPYDMLYLELRGKAFLWHQVRCIMAVLFLVGEGKEEPSVVKELLDVNKNPC 311
Query: 238 KPVYPMVRGEPLNLYHTEFDN----------------------------LTWHYDEIEVS 269
KP Y + PLNLY E+ N W Y+E +S
Sbjct: 312 KPQYSLASDLPLNLYECEYLNKGTFDPKSFDKNAPVLEDDEEIADDSELRDWVYEEESLS 371
Query: 270 HVLRDLHEDWSLLSIKATMLGEMIK 294
+ +L W+ SIK+TM EM+K
Sbjct: 372 RTISELQGLWACNSIKSTMCREMLK 396
>gi|395846476|ref|XP_003795929.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Otolemur garnettii]
Length = 480
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 196/309 (63%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALK+ Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHIALKMAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + D N E+ Y +LN LP DI+++AW+PV
Sbjct: 122 AFGQVISLDLRSQFPRDRDSEDFNLKDEASSAAKEIRYTHILNRVLPPDIRILAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI+ M+ AAQ VGTHDFRN CKM+V NGV+NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPHADLDIETMNYAAQKYVGTHDFRNFCKMDVANGVINFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q++ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 242 SAQVQLVGQSLSEERWQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++K
Sbjct: 302 LNIEKNPQKPQYSMAIEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAVK 357
Query: 286 ATMLGEMIK 294
+L M++
Sbjct: 358 THVLYSMLQ 366
>gi|391333028|ref|XP_003740926.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Metaseiulus
occidentalis]
Length = 457
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 140/313 (44%), Positives = 192/313 (61%), Gaps = 17/313 (5%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
+R +ALK LY G++Y GF +Q +D TI + +AL +T L+ D+E S++ CGRTD GV
Sbjct: 105 LRHVALKFLYLGWDYKGFVVQDDTDRTIEAVIFEALYRTKLVRDRETSNYHRCGRTDKGV 164
Query: 61 SAFCQVVTLKIRSKL-------TSPGEES-----DDNELPYLKMLNNNLPRDIKVVAWSP 108
SAF QV+TL +RS L T P + E+ Y+K+LN LP +I+++AWSP
Sbjct: 165 SAFSQVITLDLRSNLEDGVGVVTPPDYRAGRTQISGEEIDYVKILNRVLPAEIRMIAWSP 224
Query: 109 VPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
V + SARFDC R+Y+Y+FP+ L +++M +A++ L G +DFRNLCKM+VGNGV FRR
Sbjct: 225 VDPRLSARFDCRMRSYRYFFPRGRLKVESMREASRLLEGENDFRNLCKMDVGNGVTQFRR 284
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
V W ++C F IRS FLWHQIRCI++VL LVG+G E P I+
Sbjct: 285 RVEKC-----WIEAPDGSEAADMCCFVIRSNAFLWHQIRCIVAVLLLVGEGKESPSIVSD 339
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L+D+ K PRKP Y M L LY +E+D+ W Y ++ V+ L WSL SIK M
Sbjct: 340 LLDVGKNPRKPQYSMASEVALCLYDSEYDSFEWIYCHEVLNSVIDGLIRLWSLHSIKVAM 399
Query: 289 LGEMIKDTVRESK 301
+ M+KD SK
Sbjct: 400 ISSMVKDLCSISK 412
>gi|149716663|ref|XP_001505142.1| PREDICTED: tRNA pseudouridine synthase 3 [Equus caballus]
Length = 479
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/310 (44%), Positives = 200/310 (64%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 61 RHVALRIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 120
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS + G +S+D E+ Y +LN LP DI+V+AW+PV
Sbjct: 121 AFGQVISLDLRSHFPN-GRDSEDFNLKDEVNDAAKEIRYTHILNRVLPPDIRVLAWAPVE 179
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 180 PSFSARFSCLERTYRYFFPRADLDIITMNSAAQKYVGTHDFRNLCKMDVANGVINFQRTI 239
Query: 171 THAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q++ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPE+I +
Sbjct: 240 LSAQVQLVGQSLAEERGQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEVIDE 299
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L++I+K P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 300 LLNIQKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANQAV 355
Query: 285 KATMLGEMIK 294
K ++ M++
Sbjct: 356 KTHIVYSMLQ 365
>gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 198/311 (63%), Gaps = 16/311 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSEDLNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTV 297
L M++ DTV
Sbjct: 362 LYSMLQGLDTV 372
>gi|126302589|sp|Q9BZE2.3|PUS3_HUMAN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens]
gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 198/311 (63%), Gaps = 16/311 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTV 297
L M++ DTV
Sbjct: 362 LYSMLQGLDTV 372
>gi|199559785|ref|NP_112597.3| tRNA pseudouridine(38/39) synthase isoform 1 [Homo sapiens]
Length = 481
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 198/311 (63%), Gaps = 16/311 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTV 297
L M++ DTV
Sbjct: 362 LYSMLQGLDTV 372
>gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 198/311 (63%), Gaps = 16/311 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTV 297
L M++ DTV
Sbjct: 362 LYSMLQGLDTV 372
>gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens]
gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct]
gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct]
gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct]
gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct]
Length = 481
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 198/311 (63%), Gaps = 16/311 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTV 297
L M++ DTV
Sbjct: 362 LYSMLQGLDTV 372
>gi|41056053|ref|NP_956361.1| tRNA pseudouridine synthase 3 [Danio rerio]
gi|29436973|gb|AAH49516.1| Zgc:56653 [Danio rerio]
Length = 460
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 204/327 (62%), Gaps = 15/327 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G+ Y GF +Q ++DNT+ L +AL KT LI+D++ S + CGRTD GVS
Sbjct: 58 RHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKLIQDRQTSCYHRCGRTDKGVS 117
Query: 62 AFCQVVTLKIRSK-------LTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV+++ +RS +T P + ++ +ELPY+K+LN LP DI+++ W+PV
Sbjct: 118 AFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPHDIRILQWAPV 177
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
+SARFDC R Y+Y+FP+ LD++ M +AA+ GTHDFRNLCKM+VGNGV+ F+R
Sbjct: 178 ESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDFRNLCKMDVGNGVLQFQRT 237
Query: 170 VTHAGVTSA-WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ A V A + ++ H + F ++ L+HQ+RC+M++L L+GQ E PE+I Q
Sbjct: 238 ILSASVQPAQLPHPSVHNDPHQLFVFQVKGLALLYHQVRCMMALLLLIGQKLEAPEVIDQ 297
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L+D+EK PRKP Y M PL LY F+ + W + E H+L H+ W ++K +
Sbjct: 298 LLDVEKNPRKPQYSMAVDYPLVLYDCHFEGVNWRNEIEEEIHILNTFHQHWVQNAVKTQI 357
Query: 289 LGEMIKDTVRESKCTMGDLDINHLIEG 315
L MI+ ++ + MG L L+EG
Sbjct: 358 LLGMIQG-LQNTSTEMGSLQC-WLMEG 382
>gi|397498358|ref|XP_003819951.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan paniscus]
Length = 481
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 197/311 (63%), Gaps = 16/311 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSHFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVNWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTV 297
L M++ DTV
Sbjct: 362 LYSMLQGLDTV 372
>gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan troglodytes]
gi|410211820|gb|JAA03129.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410257886|gb|JAA16910.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410299778|gb|JAA28489.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410328501|gb|JAA33197.1| pseudouridylate synthase 3 [Pan troglodytes]
Length = 481
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 197/311 (63%), Gaps = 16/311 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSHFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTV 297
L M++ DTV
Sbjct: 362 LYSMLQGLDTV 372
>gi|431904392|gb|ELK09777.1| tRNA pseudouridine synthase 3 [Pteropus alecto]
Length = 481
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 195/310 (62%), Gaps = 22/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L +AL KT LIE ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLIESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS G +S+D E+ Y +LN LP DI+V+AW+ V
Sbjct: 122 AFGQVISLDLRSHFPK-GRDSEDFNLTDEVNDAAKEIRYTHILNRVLPPDIRVLAWASVE 180
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF R +
Sbjct: 181 PSFSARFSCLERTYRYFFPRADLDIVTMNCAAQKYVGTHDFRNLCKMDVANGVINFHRTI 240
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q + IC+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 241 LSAQVQLVGQGLAEERWQEPFQICQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSI 284
L+++EK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++
Sbjct: 301 LLNVEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVHEFNVTH----LQQQWANQAV 356
Query: 285 KATMLGEMIK 294
K +L M++
Sbjct: 357 KTHILYSMLQ 366
>gi|354481125|ref|XP_003502753.1| PREDICTED: tRNA pseudouridine synthase 3 [Cricetulus griseus]
gi|344255032|gb|EGW11136.1| tRNA pseudouridine synthase 3 [Cricetulus griseus]
Length = 480
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/287 (48%), Positives = 187/287 (65%), Gaps = 18/287 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN-----------ELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +SDD+ E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSQFPR-GRDSDDSDLKDEADDVAKEIRYTHILNRVLPADIRVLAWAPVE 180
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF+CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 181 PGFSARFNCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 240
Query: 171 THAGVT-SAWQ-NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V W + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 241 LSAQVQLVTWSLGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHV 271
L++IEK P+KP Y M PL LY +F+N W YD E V+H+
Sbjct: 301 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVQEFNVTHL 347
>gi|344291496|ref|XP_003417471.1| PREDICTED: tRNA pseudouridine synthase 3-like [Loxodonta africana]
Length = 480
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 138/309 (44%), Positives = 195/309 (63%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G++Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALRIAYLGWSYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESD----------DNELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS + D E+ Y +LN LP DI+++AW+PV
Sbjct: 122 AFGQVISLDLRSHFPKDKDSEDFQLKDEANDSAKEIRYTHILNRVLPPDIRILAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 AFSARFSCLERTYRYFFPRADLDIAIMSYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+ + + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 242 SAQVQLVGQSRGEDRWEESFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++IEK +KP Y M PL LY +F+N+ W YD E V+H L + W+ ++K
Sbjct: 302 LNIEKNSQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAVK 357
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 358 THMLYSMLQ 366
>gi|347800645|ref|NP_001231651.1| pseudouridylate synthase 3 [Sus scrofa]
Length = 479
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 193/309 (62%), Gaps = 20/309 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI M+ AAQ GTHDFRNLCKM+V NGV NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYDGTHDFRNLCKMDVANGVTNFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+++ +C+F + Q FL+HQ+RC+M+VLF +GQG EKPE+I +L
Sbjct: 242 SAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFPIGQGMEKPEVIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIK 285
++IEK P+KP Y M PL LY +F+N+ W YD E V+H L + W+ ++K
Sbjct: 302 LNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH----LQQLWANHAVK 357
Query: 286 ATMLGEMIK 294
ML M++
Sbjct: 358 TQMLYSMLQ 366
>gi|410895609|ref|XP_003961292.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Takifugu
rubripes]
Length = 447
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 203/341 (59%), Gaps = 21/341 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G++Y GF +Q ++ +T+ L +ALQKTCLI+D++ S++ CGRTD GVS
Sbjct: 71 RHVALRLAYLGWSYQGFAVQENTGHTVEARLFEALQKTCLIQDRQTSNYHRCGRTDKGVS 130
Query: 62 AFCQVVTLKIRSKLTSPG-----EESDD---------NELPYLKMLNNNLPRDIKVVAWS 107
AF QV+T+ +RS G E+ D +ELPY+KMLN LP+DI+++ W+
Sbjct: 131 AFSQVITIDLRSTQFCGGLGVRLPETVDAGAKTKAAVSELPYVKMLNRVLPQDIRILDWA 190
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
P E +SARFDC R Y+Y+FP+ L+++ M AA+ G HDFRNLCKM+VGNGV+ F
Sbjct: 191 PAEEGFSARFDCQSRTYRYYFPRGALNLELMADAAKRYEGKHDFRNLCKMDVGNGVLQFE 250
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + A + + ++I F ++ FL+HQ+RC+M++L L+GQ E PEII
Sbjct: 251 RTILSASIRPVNPIHASSTDQYDIFIFEVKGLAFLYHQVRCMMALLLLIGQELEAPEIIN 310
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
QL+D++ PRKP Y M PL L+ F+ L W EV+HVL L W+ +++
Sbjct: 311 QLLDVQSNPRKPQYSMAVDYPLVLHDCHFEGLDWQQSNDEVNHVLSTLQHHWTQSAVRTH 370
Query: 288 MLGEMIKDTVRESKCTMGDLDINH--LIEGEFSRPGRILSE 326
+L MIK G +H LIEG R R L E
Sbjct: 371 VLHGMIKGLE-----NTGGASSDHCWLIEGTRQRTYRPLLE 406
>gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus]
Length = 480
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 197/305 (64%), Gaps = 12/305 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALRIAYLGWGYQGFASQENTTNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKL--------TSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + +E++D E+ Y +LN LP DI+++AW+PV
Sbjct: 122 AFGQVISLDLRSQFPMAKDSESCNSKDEANDVAEEIRYTHILNRVLPPDIRILAWAPVDP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 GFSARFSCLERTYHYFFPRADLDIVTMNCAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q++ H +C+F + Q FL+HQ+RC+M++LFL+GQG EKP+II +L
Sbjct: 242 SAKVQLVGQSLGEERWQEHFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPDIIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
+++EK P+KP Y M PL L+ +F+N+ W YD+ + L + W+ ++K +L
Sbjct: 302 LNVEKNPQKPQYSMAVEFPLVLHDCKFENIKWIYDQEVQQFNVTHLQQLWANHAVKTHVL 361
Query: 290 GEMIK 294
M+K
Sbjct: 362 YSMLK 366
>gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis]
Length = 455
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 195/302 (64%), Gaps = 9/302 (2%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L +AL KT L+++++ S++ CGRTD GVS
Sbjct: 64 RHVALKIAYLGWEYQGFASQENTNNTIEEKLFEALGKTRLVKNRQTSNYHRCGRTDKGVS 123
Query: 62 AFCQVVTLKIRSKL--TSPGEESDDN------ELPYLKMLNNNLPRDIKVVAWSPVPEKY 113
AF QV++L +RS L PG+ + + E+ Y +LN LP DI+V+AW+PV +
Sbjct: 124 AFGQVISLDLRSNLPENKPGDTATNKATKASEEIHYTHILNQVLPPDIRVLAWAPVEPNF 183
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
SARF+CL R Y+Y+FP A LD+ M++AAQ VGTHDFRNLCKM+V NGV +F R + A
Sbjct: 184 SARFNCLKRTYRYFFPCATLDVALMNRAAQKFVGTHDFRNLCKMDVANGVTSFHRTILAA 243
Query: 174 GVTSA-WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
V ++ + + F + Q FL+HQ+RC+M++LFL+GQ E+PEII +L+DI
Sbjct: 244 EVQPVDGESETEQQNPFRMYYFEVTGQAFLYHQVRCMMAILFLIGQRMERPEIIDELLDI 303
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
EK PRKP Y M PL LY +F+NL W YD+ + L + W+ ++K+ ML M
Sbjct: 304 EKNPRKPQYSMAVEFPLVLYDCDFENLQWIYDQKVQEFNVTHLQQLWTNHAVKSHMLHSM 363
Query: 293 IK 294
+K
Sbjct: 364 LK 365
>gi|270006513|gb|EFA02961.1| hypothetical protein TcasGA2_TC030541 [Tribolium castaneum]
Length = 365
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/315 (44%), Positives = 191/315 (60%), Gaps = 22/315 (6%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
R + LK LY G++Y G+ Q + NTI HH+ AL KTCLIE++ +++ CGRTD
Sbjct: 37 FRHVLLKFLYLGWDYQGYVTQEDTVNTIEHHVFNALIKTCLIENRSSANYHRCGRTDKD- 95
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
L S G++ + +E+ Y K+LN LP +I+ VAW PV +SARFDC
Sbjct: 96 --------------LRSNGDDFE-SEINYCKILNRVLPENIQFVAWCPVESAFSARFDCK 140
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R YKY+FP++ LDIDAM AA YLVGTHDFRN CKM+V NGVV F+R + + S +Q
Sbjct: 141 NRTYKYFFPKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNILSVDI-SLFQ 199
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
D ++I I+ FLWHQIRCI+ +L LVGQG EKPE++ L+DI + PRKP
Sbjct: 200 ----EDERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLDITRNPRKPD 255
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRES 300
Y M PLNLY +DN+ W YD+ ++ V L++ W SIK M+ M+ D +E+
Sbjct: 256 YHMASEIPLNLYDCHYDNVNWIYDKEALNIVKAKLYKFWMFSSIKTAMMKSMLVDLEKEA 315
Query: 301 KCTMGDLDINHLIEG 315
D I+ LI+G
Sbjct: 316 SELDHD-SIDFLIQG 329
>gi|241713555|ref|XP_002412103.1| pseudouridylate synthase, putative [Ixodes scapularis]
gi|215505180|gb|EEC14674.1| pseudouridylate synthase, putative [Ixodes scapularis]
Length = 398
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 188/308 (61%), Gaps = 14/308 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+ LY G+NY G+ +Q + NT+ L +ALQ+T L++ +E S++ CGRTD GVS
Sbjct: 2 RHVALRFLYLGWNYDGYVVQEDTANTVEAALFQALQRTRLLDLRETSNYHRCGRTDKGVS 61
Query: 62 AFCQVVTLKIRSKLT------SPGEES--------DDNELPYLKMLNNNLPRDIKVVAWS 107
AF QV+++ +RS LT +P S EL Y+K+LN LP DI+V+AW+
Sbjct: 62 AFSQVISIDLRSNLTEGPEGTAPSARSIHSVISVARSTELDYVKILNGVLPPDIRVLAWA 121
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
P +SARFDC R Y+Y+ P+ L + M +AA+ LVG HDFRNLCKM+VGNGV +
Sbjct: 122 PAEPSFSARFDCQARTYRYFLPKGNLVVQRMREAAKLLVGEHDFRNLCKMDVGNGVTRYV 181
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + + S + + I Q FLWHQ+RCI+++L LVGQG E+PE++
Sbjct: 182 RRILSTELYDGEPEGDGGSSGYQMLCLEIVGQAFLWHQVRCIVAILLLVGQGLEEPEVVS 241
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
+L+D+E +P KP Y M PL LY +F+ L W YD E++ V + L + W +K+
Sbjct: 242 KLLDVEAHPCKPQYGMASEIPLVLYDCQFEGLDWRYDVAELTAVSKHLQKLWMHERVKSE 301
Query: 288 MLGEMIKD 295
M+ M+KD
Sbjct: 302 MIRSMLKD 309
>gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis]
gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 190/313 (60%), Gaps = 21/313 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL++ Y G++ HGF Q DNT+ HL AL K CL++ +E S++ CGRTD GVS
Sbjct: 80 RRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVKSRESCSYSRCGRTDKGVS 139
Query: 62 AFCQVVTLKIRSKL-----------TSPGEESDDN---ELPYLKMLNNNLPRDIKVVAWS 107
AF QV++L +R+ L +S G ++ E+ Y+ +LN LP++I+V+AW+
Sbjct: 140 AFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKEILYVDILNKVLPKEIRVLAWA 199
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
PV + ARF C +R YKY FP A LDID M+ A++ L G HDFRN CKM+V NGV+ F
Sbjct: 200 PVELDFDARFSCSYRKYKYLFPSANLDIDLMNLASKKLEGEHDFRNFCKMDVANGVIQFT 259
Query: 168 RLVTHAGVT-------SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R +T V SA + + +CE I FLWHQ+RC+MS+L +VGQG
Sbjct: 260 RNITSFKVQKVSNATYSAPGENKAKQRGYEMCEAVICGSAFLWHQVRCMMSILLMVGQGL 319
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWS 280
E+PE+I L+DIEK P++P Y M PL LY ++ +TW YD + V ++L + W+
Sbjct: 320 EQPEVIDWLLDIEKCPQRPQYNMASELPLVLYDCVYEGITWIYDPQVLESVTKNLQQLWN 379
Query: 281 LLSIKATMLGEMI 293
+ KAT+ E++
Sbjct: 380 TYATKATLAQELL 392
>gi|242008043|ref|XP_002424822.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis]
gi|212508372|gb|EEB12084.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis]
Length = 430
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 201/324 (62%), Gaps = 4/324 (1%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK Y G++ GF IQ ++ NTI + AL+K CLIE+ E S++ CGRTD GVS
Sbjct: 62 RHIFLKFCYFGWDTSGFVIQENTSNTIEQFMFDALKKCCLIENIETSNYQKCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
AF QV++L +RSKL +P E+ + E+ Y MLN LP IK +W+ V +R DC
Sbjct: 122 AFSQVISLDVRSKLENPNHENAEQEIEYCSMLNRLLPPFIKCYSWAHVGSDVGSRHDCSE 181
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R YKY+FP+ LDI+ M +AA+ L+G+HDFRNLCKM+V NG+ NF R + +A +
Sbjct: 182 RTYKYYFPKGNLDINLMREAAKSLLGSHDFRNLCKMDVANGITNFNRNIIYADIKPCSFL 241
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
++ S + F I+S+ FL+HQIR IMSVL LVGQ E P+II L+DI K P KP Y
Sbjct: 242 LE-KQSGYQFYIFEIKSKCFLYHQIRSIMSVLLLVGQKKESPDIINDLLDINKNPAKPQY 300
Query: 242 PMVRGEPLNLYHTEFD--NLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRE 299
+ PLNL+ +F +L W+ +E ++ ++++ E W+ S+K+ M+ ++I D + +
Sbjct: 301 DLALPMPLNLFEAQFTSISLKWNVNENNITKIIKNFQELWNDFSVKSIMIRDVIND-LNK 359
Query: 300 SKCTMGDLDINHLIEGEFSRPGRI 323
K G++D +G++ G +
Sbjct: 360 LKGNYGEIDEIQSSQGDYFFYGSV 383
>gi|312378112|gb|EFR24771.1| hypothetical protein AND_10418 [Anopheles darlingi]
Length = 376
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 182/305 (59%), Gaps = 22/305 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L+ Y G++Y GF Q S TI HHL ALQK CLIE +E S++ CGRTD GVS
Sbjct: 73 RHILLRFFYLGWDYQGFAAQEDSIETIEHHLFTALQKVCLIESRETSNYNRCGRTDKGVS 132
Query: 62 AFCQVVTLKIRSKLTSP----GEESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSAR 116
AF QV+++ +RSK+ E+S EL Y MLN LP +I+ +AW P V YSAR
Sbjct: 133 AFHQVISIDVRSKIAPEDDQLSEDSLATELDYCGMLNRVLPEEIRCLAWMPMVNPGYSAR 192
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
FDC R Y+Y+FP+ L IDAM +A ++LVG HDFRNLCKM+VGNGVVNF R + +
Sbjct: 193 FDCRSRTYRYFFPRGNLRIDAMQEACRHLVGAHDFRNLCKMDVGNGVVNFVRSIDECTI- 251
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
A Q +++ +R + FLWHQ+RCIM+VL LVG G E P I+++L+D+++ P
Sbjct: 252 HASQTDSSGMGSYDMMYLQLRGKAFLWHQVRCIMAVLLLVGDGKEDPTIVKELLDVDRNP 311
Query: 237 RKPVYPMVRGEPLNLYHTEFDNLT----------------WHYDEIEVSHVLRDLHEDWS 280
KP Y M PLNLY +F+ + W + E ++ + DL W+
Sbjct: 312 CKPQYSMASDVPLNLYDCQFNEKSSDTSGESVTEGSDLRDWIFKEEDLRRTISDLQTLWT 371
Query: 281 LLSIK 285
S+K
Sbjct: 372 RASVK 376
>gi|449273859|gb|EMC83213.1| tRNA pseudouridine synthase 3, partial [Columba livia]
Length = 373
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 135/296 (45%), Positives = 186/296 (62%), Gaps = 11/296 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R ALK+ Y G+ Y GF Q ++ NT+ L ALQ T L+ D++ + + CGRTD GVS
Sbjct: 53 RHAALKVAYLGWGYQGFSSQENTRNTVEEQLFHALQTTRLVPDRQSARYQRCGRTDKGVS 112
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
AF QV++L +RS L P + EL Y MLN LP DI+V+AW+PV ++SARF +
Sbjct: 113 AFGQVISLDLRSNLKQPSGDETAGELRYPHMLNRVLPPDIRVLAWAPVGPEFSARFSFFY 172
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R + P+ LD+ MH+AAQ VGTHDFRN CKM+V NGV NF+R V A VT A
Sbjct: 173 RYFF---PRGPLDVALMHRAAQRYVGTHDFRNFCKMDVANGVTNFQRTVLGAAVTPADAA 229
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ ++ + F + Q FL+HQ+RC+++VLFL+GQG E+PEII +L+D+EK PRKP Y
Sbjct: 230 QKSPENPFGLWCFEVTGQAFLYHQVRCMVAVLFLIGQGMERPEIIDELLDVEKNPRKPQY 289
Query: 242 PMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
M PL L+ +F+NL W YD E VSH L + W+ ++K +L +M+
Sbjct: 290 SMAVEFPLVLHDCQFENLRWIYDQDVHEFTVSH----LQQLWAAHAVKTHILHDML 341
>gi|321464475|gb|EFX75483.1| hypothetical protein DAPPUDRAFT_323292 [Daphnia pulex]
Length = 429
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 191/304 (62%), Gaps = 15/304 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + L++ Y G++Y GF +Q ++ TI + KAL+KT L+E +E S++ CGRTD GVS
Sbjct: 67 RHVLLQVAYVGWDYAGFVVQEHTEKTIEAEVFKALEKTRLLESRETSNYHRCGRTDKGVS 126
Query: 62 AFCQVVTLKIRSKLTS----------PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 111
+F Q +++ +RS L+ + + E+ Y+ +LN LP +I+++AW+P+ +
Sbjct: 127 SFGQAISIDLRSNLSEGKGVFIPDGHQAKVGNTVEIDYVGILNKVLPPEIRMIAWAPINQ 186
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
SARFDC R Y Y+FP+A L+I+ M A+Q L+G HDFRNLCKM+VGNGV+ F R +
Sbjct: 187 SLSARFDCRQRTYHYYFPKANLNIERMRVASQSLIGEHDFRNLCKMDVGNGVIKFDRRIM 246
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ + + + +++ + Q FLWHQ+RCI+++LFL+GQG E+ IIQ+L++
Sbjct: 247 DIQIEAIDDD---KANSYSMIRLKLIGQAFLWHQVRCIVAILFLIGQGKEETTIIQELLN 303
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
+E+ PRKP Y M PLNL+ + D+ W YD + +V+ W+ SIKATM+
Sbjct: 304 VERNPRKPQYGMASEIPLNLFTCTYSDDDCQWIYDAESLRYVISGYQTLWAENSIKATMI 363
Query: 290 GEMI 293
EM+
Sbjct: 364 KEML 367
>gi|351703596|gb|EHB06515.1| tRNA pseudouridine synthase 3 [Heterocephalus glaber]
Length = 448
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 187/299 (62%), Gaps = 12/299 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q ++DNTI L AL KT L+E ++ S++ CGRTD GVS
Sbjct: 31 RHVALRIAYLGWAYQGFASQENTDNTIEEKLFVALTKTRLVESRQTSNYHRCGRTDKGVS 90
Query: 62 AFCQVVTLKIRSK---------LTSPGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ L E SDD E Y +L+ LP DI+V+AW+PV
Sbjct: 91 AFGQVISLDLRSQFPRGKDSKDLNLKDEVSDDAKEARYTHILSRVLPPDIRVLAWAPVEC 150
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL Y Y+FP A L+ M+ AAQ VGTH FRNLCKM+V NGV+NF+R +
Sbjct: 151 SFSARFSCLEHTYHYFFPCADLNSVRMNYAAQKYVGTHVFRNLCKMDVANGVINFQRTIL 210
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q++ + +C+ + Q FL+HQ+RC+M++LFL+GQG EKPE+I +L
Sbjct: 211 SAQVQLVGQSLGEERWQEPFQLCQLEVTGQAFLYHQVRCMMAILFLIGQGMEKPEVIDEL 270
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
+ IEK P+KP Y M PL LY +F+N+ W YD++ + L + W+ ++K+ M
Sbjct: 271 LKIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDQVVQEFNVTHLQQLWANHAVKSHM 329
>gi|290562699|gb|ADD38745.1| tRNA pseudouridine synthase 3 [Lepeophtheirus salmonis]
Length = 420
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 14/302 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + +I Y G+NYHGF Q S TI HL KAL TCLI+ +E S++ CGRTD GVS
Sbjct: 58 RKVLFQITYFGWNYHGFTTQEDSCMTIEAHLFKALLTTCLIQSRETSNYHRCGRTDKGVS 117
Query: 62 AFCQVVTLKIRSKLTS-------PGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV+++ +R+ L P ++D +E+ Y+K++N+NLP DI+++AW+P
Sbjct: 118 AFRQVISIDVRTNLKEGIGVFDYPDCKADSRPDMPHEIDYIKIINSNLPPDIQLIAWTPA 177
Query: 110 PEK-YSARFDCLFRNYKYWFPQAGL-DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
+ SARFDC R YKY+FP + + M++A LVG+HDFRN CKM+V NGV+ +
Sbjct: 178 QNRELSARFDCKKRTYKYFFPLGSIKSLSKMNEAGAKLVGSHDFRNFCKMDVSNGVLTYI 237
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + + + + + S +++C + FLWHQIRCI++VLF +GQG E+PE+I
Sbjct: 238 RRMVNVSTSVLEPSKEKESSPYDLCVLKVEGNAFLWHQIRCIVTVLFHIGQGREEPELID 297
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
+L+DIEK P +P Y + PLNL+ ++ LTW Y+ + ++ E W+ +IKA
Sbjct: 298 ELLDIEKNPCRPQYGLASEIPLNLFDCSYEGLTWDYNLESLRTCIKGFQELWAEHAIKAE 357
Query: 288 ML 289
M+
Sbjct: 358 MI 359
>gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus]
Length = 322
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 168/252 (66%), Gaps = 12/252 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 70 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 129
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 130 AFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEP 189
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 190 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 249
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 250 CAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 309
Query: 230 VDIEKYPRKPVY 241
++I+K P+KP Y
Sbjct: 310 LNIQKNPQKPQY 321
>gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus]
Length = 316
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 168/252 (66%), Gaps = 12/252 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 64 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 123
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 124 AFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEP 183
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 243
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 244 CAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 303
Query: 230 VDIEKYPRKPVY 241
++I+K P+KP Y
Sbjct: 304 LNIQKNPQKPQY 315
>gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis]
gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis]
Length = 507
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 181/288 (62%), Gaps = 7/288 (2%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G+ Y GF Q ++ NT+ + AL KT L+E ++ S++ CGRTD GVS
Sbjct: 59 RHVALRLAYLGWGYQGFASQENTKNTVEETVFNALLKTRLVESRQTSNYHRCGRTDRGVS 118
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QV++L +R ++ G+ E+ Y+ +LN LP DI+V++W+PVP +SARF C
Sbjct: 119 ALAQVISLDLRC--SAEGKP----EIRYVHILNRVLPPDIRVLSWAPVPPSFSARFSCGS 172
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y FP A LD++AM KAA+ L GTHDFRNLCKM+V NGV+NF R V A V +
Sbjct: 173 RTYRYLFPCAQLDVEAMDKAARLLEGTHDFRNLCKMDVANGVLNFTRTVLSARVGPVPE- 231
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ + + I FL+HQ+RCIM VLFLVGQG EKPE+I +L+D+ K PRKP Y
Sbjct: 232 IPGDMGPFQLYHLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDVVKNPRKPQY 291
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
M PL LY+ FD++ W ++ S + L W+ ++K +L
Sbjct: 292 NMAVEFPLVLYNCHFDDVQWVSEKEAQSLTVAHLQRLWTQEAVKTQIL 339
>gi|289742875|gb|ADD20185.1| pseudouridylate synthase [Glossina morsitans morsitans]
Length = 444
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 189/333 (56%), Gaps = 24/333 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LK LY G++Y GF Q S+NTI HL KAL +TCLIE + +++ CGRTD VS
Sbjct: 55 RHVLLKFLYFGWDYQGFACQEDSNNTIEFHLFKALTRTCLIESRSSANYHRCGRTDKKVS 114
Query: 62 AFCQVVTLKIRSKLTSPG---EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARF 117
AFCQV+++ +RSK E + E+ Y ++N LP++I+ ++W P+ +SARF
Sbjct: 115 AFCQVISIDLRSKFPEKQQFEESCLEKEIDYCGIMNRVLPKNIRCISWMPIRNHLFSARF 174
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DC+ R Y+Y+FP+ L+I AM A + L DFRNLCKM+V NGV N+ R + A V
Sbjct: 175 DCITRTYRYFFPKGNLNITAMQDACKLLQRHTDFRNLCKMDVHNGVTNYVRHIEAANVRL 234
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
+ + + + I++ FLWHQIRCIM+VL L+GQ E+P +I +L+++EK P
Sbjct: 235 CPHQNESKNKGYAMHYLEIKANAFLWHQIRCIMTVLLLIGQEKEEPSVINELLNVEKNPC 294
Query: 238 KPVYPMVRGEPLNLYHTEF--------------------DNLTWHYDEIEVSHVLRDLHE 277
KP Y G PLNLYH EF D W ++E + ++ L
Sbjct: 295 KPQYTPAMGFPLNLYHCEFRDKSEQKAMSESQQGRRDLRDLTKWLHNENNLRRLIEILQS 354
Query: 278 DWSLLSIKATMLGEMIKDTVRESKCTMGDLDIN 310
+WS IKATM+ + D + + +D+N
Sbjct: 355 EWSQAQIKATMVRSTLYDLEQLLEKEFNAIDVN 387
>gi|427798085|gb|JAA64494.1| Putative pseudouridylate synthase, partial [Rhipicephalus
pulchellus]
Length = 439
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 34/333 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++LY G++Y G+ +Q + T+ L +AL++T L+ED+ + + CGRTD GVS
Sbjct: 71 RHVALRLLYLGWDYSGYVLQEDTGRTVEAALFEALERTRLLEDRTDAHYHRCGRTDKGVS 130
Query: 62 AFCQVVTLKIRSKLT-------------SPGEESDDNELPYLKMLNNNLPRDIKVVAWSP 108
AF QV+++ +R+ L+ + E S EL Y+K+LN LP +I+V+AW+P
Sbjct: 131 AFSQVISIDLRTNLSEGVGVFAQEGYQPNSSEASRTEELDYVKILNGVLPPEIRVLAWAP 190
Query: 109 VPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
V + +SARFDC R Y+Y+FP+ LD++ M + A LVG HDFRNLCKM+V NGV N+ R
Sbjct: 191 VDQAFSARFDCRQRTYRYFFPRGSLDVERMCEGAALLVGEHDFRNLCKMDVANGVTNYMR 250
Query: 169 LVTHAGV---------------------TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIR 207
+ + T+ + F + +++ I Q FLWHQ+R
Sbjct: 251 RILRTSIFRWPPSKSPLVASPAGEDSSHTATFHKDGFTEDSYDLLCLEIVGQAFLWHQVR 310
Query: 208 CIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIE 267
CI++VL L+GQ E+P++I +L+D+ K PRKP Y M PL LY +F+ L W E
Sbjct: 311 CIVAVLLLIGQRLEEPQVISELLDVAKNPRKPQYAMAAELPLVLYDCQFEGLEWQQSSAE 370
Query: 268 VSHVLRDLHEDWSLLSIKATMLGEMIKDTVRES 300
V L W+ IK + +R S
Sbjct: 371 AEAVATHLQALWTQARIKXRVFTVTPASLLRRS 403
>gi|195122857|ref|XP_002005927.1| GI20747 [Drosophila mojavensis]
gi|193910995|gb|EDW09862.1| GI20747 [Drosophila mojavensis]
Length = 500
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 190/326 (58%), Gaps = 35/326 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + +KI Y G++Y GF Q S +TI +L +AL++TCLIE + S++ CGRTD VS
Sbjct: 101 RHVLMKITYFGWDYQGFACQEDSADTIEGYLFRALERTCLIESRATSNYHRCGRTDKEVS 160
Query: 62 AFCQVVTLKIRSKL---TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV--PEKYSAR 116
AFCQV+++ +RSK T ES + E+ Y +LN LP++I+ V+W P+ P+ YSAR
Sbjct: 161 AFCQVISINLRSKHSPDTQMKPESLNTEIDYCSLLNRVLPKNIQCVSWMPLRNPD-YSAR 219
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
FDC+ R Y+Y+FP+ LDID+M +A Q LV DFRN CKM+V NGV N+ R + HA +
Sbjct: 220 FDCISRTYRYYFPKGDLDIDSMQQACQLLVCHGDFRNFCKMDVHNGVTNYMRNLQHAEIR 279
Query: 177 SA--WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+ +S + + I++ FLWHQIRCIM+VL LVGQ NE+P II +L+D+
Sbjct: 280 PCDNTERQLEQNSGYIMYYLEIKANAFLWHQIRCIMAVLLLVGQKNEQPSIITKLLDVGS 339
Query: 235 YPRKPVYPMVRGEPLNLYHTEF---------------------------DNLTWHYDEIE 267
P KP Y G PLNL+H EF D W Y E
Sbjct: 340 NPCKPQYTPAIGLPLNLFHCEFRSHSTRQSNLPNLSQIAIVESESESQSDLTNWVYSEEN 399
Query: 268 VSHVLRDLHEDWSLLSIKATMLGEMI 293
+ ++ ++ +W+ S+K TM+ ++
Sbjct: 400 LQKLIENVQSEWTQFSVKCTMIRNVL 425
>gi|443732826|gb|ELU17390.1| hypothetical protein CAPTEDRAFT_127384, partial [Capitella teleta]
Length = 372
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 176/292 (60%), Gaps = 8/292 (2%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A K Y G++++GF Q +S TI + A KT LIE ++ S + CGRTD GVS
Sbjct: 4 RHVAFKFTYLGWDFNGFADQETSSKTIEAAVFDAFVKTKLIESRDTSKYQRCGRTDKGVS 63
Query: 62 AFCQVVTLKIRSKL-TSPG------EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
AF QV++L++R+ L PG S E+P+ KMLN LP +I+V+AW PV E +S
Sbjct: 64 AFTQVISLEVRTNLLEGPGVRVPEDNASRGKEMPFSKMLNGCLPPEIRVIAWCPVDEDFS 123
Query: 115 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
ARF C R YKY+FP+A L++D M AA L+G HDFRN CKM+V NGV+ + R ++
Sbjct: 124 ARFSCQSRTYKYFFPRAQLNLDVMRAAAAKLIGLHDFRNFCKMDVRNGVIEYMRRISEIH 183
Query: 175 VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+ D +++C + + FLWHQ+RCI ++L ++G+G E PE+I L+++EK
Sbjct: 184 IEPFNSEYAAEDDGYSMCVMTVHGKSFLWHQVRCIAAILLIIGEGKETPELIDDLLNVEK 243
Query: 235 YPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIE-VSHVLRDLHEDWSLLSIK 285
+P++P Y M PL L+ EF+ W YD E + + + W+ ++K
Sbjct: 244 HPQRPQYMMASEIPLVLFGAEFEGTEWVYDAAEDLESTVHHFQQMWASHAVK 295
>gi|195429481|ref|XP_002062787.1| GK19511 [Drosophila willistoni]
gi|194158872|gb|EDW73773.1| GK19511 [Drosophila willistoni]
Length = 495
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 188/329 (57%), Gaps = 38/329 (11%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LK+ Y G++Y GF Q S++TI +L +AL +TCLIE + S++ CGRTD VS
Sbjct: 107 RHVLLKVTYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRANSNYHRCGRTDKEVS 166
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSA 115
AFCQV+++ +RSK P E D E+ Y +LN LP++I+ VAW P+ YSA
Sbjct: 167 AFCQVISIDLRSKY--PAESQLDPTSLATEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSA 224
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RFDC+ R+Y+Y+FP+ LDI+AM +A Q LV DFRN CKM+V NGV +F R + A V
Sbjct: 225 RFDCIARSYRYYFPKGDLDIEAMQEACQLLVNHADFRNFCKMDVHNGVTSFMRNLQAARV 284
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
Q S + + I++ FLWHQIRCIM++L LVGQ EK II L+D+
Sbjct: 285 QPCEQTRNEKVSGYAMFYLEIKANAFLWHQIRCIMAILLLVGQRKEKSSIISDLLDVNVN 344
Query: 236 PRKPVYPMVRGEPLNLYHTEF-------------------DNLT-----------WHYDE 265
P KP Y G PLNL+H EF DN T W Y+E
Sbjct: 345 PCKPQYTPAIGLPLNLFHCEFREHTTRRTTDDEGDEVIIDDNFTEVSPAETHLTDWIYNE 404
Query: 266 IEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
++ ++ ++ +W+ S+K TM+ +++
Sbjct: 405 ENLTKLIENIQGEWAQFSVKCTMIRNVLQ 433
>gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi]
Length = 423
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 188/307 (61%), Gaps = 22/307 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + L+I Y G++YHGF +Q S TI HL AL +TCLI +E S++ CGRTD GVS
Sbjct: 60 RKVLLQICYFGWSYHGFAVQEDSPMTIEGHLFNALSRTCLIRSRETSNYHRCGRTDKGVS 119
Query: 62 AFCQVVTLKIRSK-LTSPG-------------EESDDNELPYLKMLNNNLPRDIKVVAWS 107
AF QVV++++RS L PG + + E+ Y K+LN+NLP DI+V+AW+
Sbjct: 120 AFRQVVSIELRSNLLEGPGVFDYPECRAHSRPNPTTNEEIDYCKILNSNLPPDIQVIAWA 179
Query: 108 PVPEK-YSARFDCLFRNYKYWFP-QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
P+ + +SARFDC R YKY FP A D+ + +A L+G+HDFRN CKM+V NGV+
Sbjct: 180 PLTNRDFSARFDCKIREYKYIFPLGAARDLSRIQEAGAKLLGSHDFRNFCKMDVSNGVLT 239
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
+ R + V+ + + +++ E I FLWHQIRCI++VLF +GQG E+P +
Sbjct: 240 YIRRMLEVSVSPLESS---STDSYSLVELKIVGNAFLWHQIRCIVTVLFHIGQGLEEPSL 296
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLY---HTEFDNLTWHYDEIEVSHVLRDLHEDWSLL 282
I +L+D+EK+PR+P Y + PLNL+ + E N++W Y+ + L+ W+
Sbjct: 297 IDELLDVEKHPRRPQYGLASEIPLNLFDCSYGEEGNISWIYEVPSLKATLKGFQSLWTQH 356
Query: 283 SIKATML 289
++KA M+
Sbjct: 357 AVKARMI 363
>gi|125811944|ref|XP_001362058.1| GA15853 [Drosophila pseudoobscura pseudoobscura]
gi|54637235|gb|EAL26638.1| GA15853 [Drosophila pseudoobscura pseudoobscura]
Length = 497
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 200/367 (54%), Gaps = 57/367 (15%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LK+ Y G++Y GF Q S++TI HL +AL +TCLIE + S++ CGRTD VS
Sbjct: 102 RHVLLKLTYFGWDYQGFACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVS 161
Query: 62 AFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARF 117
AFCQV+++ +RSK T + S +E+ Y +LN LP++I+ VAW P+ YSARF
Sbjct: 162 AFCQVISIDLRSKHTPDTQLEPASLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARF 221
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DC R+Y+Y+FP+ LDI+AM +A + LVG DFRN CKM+V NGV F R + A V
Sbjct: 222 DCTSRSYRYYFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHNGVTKFIRNLQAARVEP 281
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
+ N+S +++ I++ FLWHQIRCIM+VL LVGQ E P I+ L+D+E P
Sbjct: 282 CVE--MLNNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQRRELPRIVSDLLDVETNPC 339
Query: 238 KPVYPMVRGEPLNLYHTEFDNLT------------------------------------- 260
KP Y G PLNL+H F + T
Sbjct: 340 KPQYTPALGLPLNLFHCNFRDTTTRKLNLPADGAEDDEAMDTSAMDVESSESSAEEKDIT 399
Query: 261 -WHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRESKCTMGDLDINHLIEGEFSR 319
W Y+E + ++ ++ +W+ S+K+TM+ +++ + HL+E +
Sbjct: 400 SWIYNEENLEKLIENIQCEWTEFSVKSTMIRNVLQ-------------QLEHLLEKNYHI 446
Query: 320 PGRILSE 326
R+ ++
Sbjct: 447 KERVTAQ 453
>gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/286 (44%), Positives = 177/286 (61%), Gaps = 7/286 (2%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL++ Y G+ Y GF Q ++ NT+ + AL KT L+E ++ S++ CGRTD GVSA
Sbjct: 64 VALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRLVESRQTSNYHRCGRTDRGVSAL 123
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV++L +R GE E+ Y+ +LN LP DI+V++W+ VP +SARF C R
Sbjct: 124 GQVISLDLRCS----GE--GKPEIRYVHILNRVLPPDIRVLSWAAVPPSFSARFSCRSRT 177
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y FP A LD++AM KAA+ L GTHDFRNLCKM+V NGV+NF R V A V + +
Sbjct: 178 YRYLFPCAQLDVEAMDKAARLLEGTHDFRNLCKMDVANGVMNFIRTVLSARVEPVPE-IP 236
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ + I FL+HQ+RCIM VLFLVGQG EKPE+I +L+D+ K PRKP Y M
Sbjct: 237 GDMGPFQLYRLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDVAKNPRKPQYNM 296
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
PL LY+ FD++ W ++ S + L W+ ++K +L
Sbjct: 297 AVEFPLVLYNCHFDDVQWVSEKEAQSLTVSHLQRLWTQEAVKTQIL 342
>gi|326429850|gb|EGD75420.1| hypothetical protein PTSG_06496 [Salpingoeca sp. ATCC 50818]
Length = 460
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 182/306 (59%), Gaps = 18/306 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALK+ Y G YHG IQ S+ +TI HL +AL+K+ L+ED + + ++ CGRTD GVS
Sbjct: 61 RKIALKVAYLGEKYHGLAIQISAPDTIEAHLFEALEKSKLVEDIKTADYSRCGRTDKGVS 120
Query: 62 AFCQVVTLKIRSKL-------TSPGEE-------SDDNELPYLKMLNNNLPRDIKVVAWS 107
A+CQVV+L +RS L + P E + +EL Y K+LN LP +I+VV W
Sbjct: 121 AYCQVVSLVVRSNLNECRGFISKPSVEPAKKKAKATVDELDYTKILNGLLPPEIRVVDWG 180
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
V +SARF C R+YKY+F +A +D AM A +LVG HDFRN CK +V GV NF
Sbjct: 181 AVDTDFSARFSCNARHYKYFFHRANMDTAAMQAACDHLVGEHDFRNFCKADVAGGVTNFV 240
Query: 168 RLVTHAGVTSAW---QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + A V A +V +D ++ EFNI FLWHQ+RC+M+VLF+VG+G+E+P
Sbjct: 241 RTIKEARVCPAEIGDASVHSSDGDFDLWEFNIIGHAFLWHQVRCMMAVLFMVGRGDEQPG 300
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH-YDEIEVSHVLRDLHEDWSLLS 283
+++ L++I++ KP Y M PL LY +FD + W DE + + W S
Sbjct: 301 MVRHLLNIDECTHKPQYVMASELPLVLYDCKFDGIDWSGNDEQHAARIHTHWRSLWQTNS 360
Query: 284 IKATML 289
I+ +L
Sbjct: 361 IRNALL 366
>gi|195171697|ref|XP_002026640.1| GL11833 [Drosophila persimilis]
gi|194111566|gb|EDW33609.1| GL11833 [Drosophila persimilis]
Length = 421
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/263 (46%), Positives = 168/263 (63%), Gaps = 6/263 (2%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LK+ Y G++Y GF Q S++TI HL +AL +TCLIE + S++ CGRTD VS
Sbjct: 102 RHVLLKLTYFGWDYQGFACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVS 161
Query: 62 AFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARF 117
AFCQV+++ +RSK T + S +E+ Y +LN LP++I+ VAW P+ YSARF
Sbjct: 162 AFCQVISIDLRSKHTPDTQLEPASLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARF 221
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DC R+Y+Y+FP+ LDI+AM +A + LVG DFRN CKM+V NGV F R + A V
Sbjct: 222 DCTSRSYRYYFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHNGVTKFIRNLQAARVEP 281
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
+ N+S +++ I++ FLWHQIRCIM+VL LVGQ E P I+ L+D+E P
Sbjct: 282 CVE--MLNNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQRRELPRIVSDLLDVETNPC 339
Query: 238 KPVYPMVRGEPLNLYHTEFDNLT 260
KP Y G PLNL+H F + T
Sbjct: 340 KPQYTPALGLPLNLFHCNFRDTT 362
>gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 176/286 (61%), Gaps = 7/286 (2%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL++ Y G+ Y GF Q ++ NT+ + AL KT L+E ++ S++ CGRTD GVSA
Sbjct: 64 VALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRLVESRQTSNYHRCGRTDRGVSAL 123
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV++L +R GE E+ Y+ +LN LP DI+V++W+ VP +SARF C R
Sbjct: 124 GQVISLDLRCS----GE--GKPEIRYVHILNRVLPPDIRVLSWAAVPPSFSARFSCRSRT 177
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y F A LD++AM KAA+ L GTHDFRNLCKM+V NGV+NF R V A V + +
Sbjct: 178 YRYLFSCAQLDVEAMDKAARLLEGTHDFRNLCKMDVANGVMNFIRTVLSARVEPVPE-IP 236
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ + I FL+HQ+RCIM VLFLVGQG EKPE+I +L+D+ K PRKP Y M
Sbjct: 237 GDMGPFQLYRLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDVAKNPRKPQYNM 296
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
PL LY+ FD++ W ++ S + L W+ ++K +L
Sbjct: 297 AVEFPLVLYNCHFDDVQWVSEKEAQSLTVSHLQRLWTQEAVKTQIL 342
>gi|195346649|ref|XP_002039870.1| GM15659 [Drosophila sechellia]
gi|194135219|gb|EDW56735.1| GM15659 [Drosophila sechellia]
Length = 498
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 189/338 (55%), Gaps = 49/338 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LKI Y G++Y GF Q S++TI +L +AL +TCLIE + S++ CGRTD VS
Sbjct: 99 RHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVS 158
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSA 115
AFCQV+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSA
Sbjct: 159 AFCQVISIDLRSK--HPPESQLDPTSLSSEIDYCGLLNRVLPKNIQCVAWMPLRSSVYSA 216
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RFDC+ R+Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V
Sbjct: 217 RFDCVSRSYRYFFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARV 276
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ +N +S +++ IR+ FLWHQIRCIM+VL LVGQ EKP II L+++E
Sbjct: 277 EACDEN--HTNSGYDMYYLEIRANAFLWHQIRCIMAVLILVGQKKEKPAIISDLLNVESN 334
Query: 236 PRKPVYPMVRGEPLNLY---------------------------------------HTEF 256
P KP Y G PLNL+ H E
Sbjct: 335 PCKPQYTPAIGLPLNLFRCDFRDHTTRSVNHSGSGDANEEAMDTVADESDDLNSPEHVER 394
Query: 257 DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
D W Y+E + ++ + +W+ S+K+TM+ +++
Sbjct: 395 DLTAWIYNEENLQKLIENTQCEWTQFSVKSTMIRNVLQ 432
>gi|195552156|ref|XP_002076382.1| GD15210 [Drosophila simulans]
gi|194202031|gb|EDX15607.1| GD15210 [Drosophila simulans]
Length = 498
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 189/338 (55%), Gaps = 49/338 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LKI Y G++Y GF Q S++TI +L +AL +TCLIE + S++ CGRTD VS
Sbjct: 99 RHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVS 158
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSA 115
AFCQV+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSA
Sbjct: 159 AFCQVISIDLRSK--HPPESQLDPTSLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSA 216
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RFDC+ R+Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V
Sbjct: 217 RFDCVSRSYRYYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARV 276
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ +N +S +++ I++ FLWHQIRCIM+VL LVGQ EKP +I L+D+E
Sbjct: 277 EACDEN--HTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKEKPAVISDLLDVESN 334
Query: 236 PRKPVYPMVRGEPLNLYHTEF--------------------------------------- 256
P KP Y G PLNL+ +F
Sbjct: 335 PCKPQYTPAIGLPLNLFRCDFRDHTTRSVNHSGSGDANEEAMDTVANESDDLNAPEPLER 394
Query: 257 DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
D W Y+E + ++ + +W+ S+K+TM+ +++
Sbjct: 395 DLTAWIYNEENLQKLIENTQCEWTQFSVKSTMIRNVLQ 432
>gi|449664207|ref|XP_002153998.2| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Hydra
magnipapillata]
Length = 426
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 177/293 (60%), Gaps = 6/293 (2%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IALK LY G++Y G Q +++NTI + A+ K LIED+ ++ CGRTD GVSAF
Sbjct: 81 IALKFLYLGWDYQGLANQETTNNTIEDAIFNAMIKAKLIEDRVLCKYSRCGRTDKGVSAF 140
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ L +RS EE E+ Y+++LN LP +I+++A++ VP+ + ARFDC R
Sbjct: 141 GQVIALNVRSNTLVSEEEDTREEISYVRLLNKILPPEIRMLAFARVPQDFDARFDCDTRM 200
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
YKY+FP +DI M AAQ VG DFRN CK++VGN V +F R + V NV
Sbjct: 201 YKYFFPAKRMDIKLMDAAAQKFVGEKDFRNFCKVDVGNNVNHFIRNIVSFKV-QMLNNVD 259
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
D ICE I FLWHQ+RC+++VL L+G G EKPEII L+D+E P++P Y +
Sbjct: 260 LVD----ICEMEITGLAFLWHQVRCMVAVLLLIGLGVEKPEIIDHLLDVESCPKRPQYEL 315
Query: 244 VRGEPLNLYHTEFDN-LTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKD 295
PL LY +D+ + W YD + + L + +++ ++++ ++ M+KD
Sbjct: 316 ASEIPLVLYDCTYDDKINWCYDIESNTQNVNILQKKFTIFTVQSAIIASMLKD 368
>gi|320163253|gb|EFW40152.1| tRNA-pseudouridine synthase [Capsaspora owczarzaki ATCC 30864]
Length = 548
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 169/287 (58%), Gaps = 25/287 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALKI Y G+ Y+G IQ + T+ HL+ AL+ LI D ++++ CGRTD+GVS
Sbjct: 140 RHIALKIAYLGWKYNGLAIQPDVE-TVEGHLISALKTCMLIPDLSWANYSRCGRTDAGVS 198
Query: 62 AFCQVVTLKIRSKLTSP----------------GEESDDNELPYLKMLNNNLPRDIKVVA 105
AF QVV+L +R+ LT E+ EL Y+ LN LP DI+VVA
Sbjct: 199 AFGQVVSLDVRTNLTEGVGVIQQESAIPFQKGRKTEATHAELEYVFKLNRQLPADIRVVA 258
Query: 106 WSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
W+PVP + ARF CL+R YKY+FP+ ++I+AM +AAQY VGTHD+RN CK N NGV +
Sbjct: 259 WTPVPLAFDARFSCLYRKYKYFFPKNNMNIEAMQRAAQYFVGTHDYRNFCKTNFDNGVKS 318
Query: 166 FRRLV--------THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
F R + T + SA + E N+ FL+HQ+RC+ S+LF+VG
Sbjct: 319 FVRRILAFDVVKSTCLPINSATDATDLEGQAAEMYELNVLGFAFLYHQVRCMTSILFMVG 378
Query: 218 QGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD 264
QG E PE+++ ++DIEK P +P Y M PL LY F++L W +
Sbjct: 379 QGLEPPEVVEHMLDIEKCPNRPNYNMASDVPLVLYDCVFEDLEWRVE 425
>gi|195488597|ref|XP_002092382.1| GE11697 [Drosophila yakuba]
gi|194178483|gb|EDW92094.1| GE11697 [Drosophila yakuba]
Length = 497
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 188/338 (55%), Gaps = 49/338 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LKI Y G++Y GF Q S++TI +L +AL +TCLIE + S++ CGRTD VS
Sbjct: 98 RHVLLKITYFGWDYQGFACQEDSNDTIEANLFRALTRTCLIESRATSNYHRCGRTDKEVS 157
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSA 115
AFCQV+++ +RSK P E D E+ Y +LN LP++I+ VAW P+ YSA
Sbjct: 158 AFCQVISIDLRSK--HPPESQLDPTAISTEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSA 215
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RFDC+ R+Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V
Sbjct: 216 RFDCVSRSYRYYFPKGDLDIAAMSKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARV 275
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ +N +S +++ I++ FLWHQIRCIM+VL LVGQ E P +I +L+D+E
Sbjct: 276 EACDEN--HTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPAVISKLLDVESN 333
Query: 236 PRKPVYPMVRGEPLNLY---------------------------------------HTEF 256
P KP Y G PLNL+ H E
Sbjct: 334 PCKPQYTPAIGLPLNLFRCDFRDQTTRSVNHPGSGDANEEPMDTVTEETDNTNVAEHLER 393
Query: 257 DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
D W Y+E + ++ + +W+ S+K+TM+ +++
Sbjct: 394 DLTKWIYNEENLQKLIENTQCEWTQFSVKSTMIRNVLQ 431
>gi|194882124|ref|XP_001975163.1| GG20714 [Drosophila erecta]
gi|190658350|gb|EDV55563.1| GG20714 [Drosophila erecta]
Length = 497
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 187/332 (56%), Gaps = 47/332 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LKI Y G++Y GF Q S++TI +L +AL +TCLI+ + S++ CGRTD VS
Sbjct: 98 RHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALSRTCLIDSRANSNYHRCGRTDKEVS 157
Query: 62 AFCQVVTLKIRSKLTSPGEESD----DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSAR 116
AFCQV+++ +RSK SP + D E+ Y +LN LP++I+ VAW P+ YSAR
Sbjct: 158 AFCQVISIDLRSK-HSPEFQLDPTALSTEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSAR 216
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
FDC+ R+Y+Y+FP+ LDI AM +A L DFRN CKM+V NGV N+ R + A V
Sbjct: 217 FDCVSRSYRYYFPKGDLDIGAMSQACDLLERHADFRNFCKMDVHNGVTNYMRNLQSARVV 276
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+ +N +S +++ I++ FLWHQIRCIM+VL LVGQ E P +I +L+D+E P
Sbjct: 277 ACDEN--HTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKESPTVISELLDVESNP 334
Query: 237 RKPVYPMVRGEPLNLYHTEF---------------------------------------D 257
KP Y G PLNL+H +F D
Sbjct: 335 CKPQYSPAIGLPLNLFHCDFRDQTTRSVNQLGSGDANEEAMDTVSEETDNTNAPELLERD 394
Query: 258 NLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
TW Y+E + ++ + +W+ S+K+TM+
Sbjct: 395 LTTWIYNEENLQKLIENTQCEWAQFSVKSTMI 426
>gi|194755854|ref|XP_001960194.1| GF13245 [Drosophila ananassae]
gi|190621492|gb|EDV37016.1| GF13245 [Drosophila ananassae]
Length = 492
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 188/338 (55%), Gaps = 50/338 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LK+ Y G++Y G Q S++TI HL +AL +TCLIE + S++ CGRTD VS
Sbjct: 98 RHVLLKVSYFGWDYQGLACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVS 157
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSA 115
AFCQV+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSA
Sbjct: 158 AFCQVISIDLRSK--HPPESQLDATSISSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSA 215
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RFDC+ R Y+Y+FP+ LDI AM +A +LV DFRN CKM+V NGV N+ R + A V
Sbjct: 216 RFDCVARTYRYYFPKGDLDIPAMQEACNHLVRHADFRNFCKMDVHNGVTNYTRNLQSARV 275
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ + + DS +++ I++ FLWHQIRCIM+VL LVGQ EKP ++ L+D+E
Sbjct: 276 EACEETL--TDSGYDMYYLEIQANAFLWHQIRCIMAVLILVGQKKEKPSVVTDLLDVEVN 333
Query: 236 PRKPVYPMVRGEPLNLYHTEFDNLT----------------------------------- 260
P KP Y G PLNL+ +F + T
Sbjct: 334 PCKPQYTPAIGLPLNLFRCDFRDKTTRSVTHPDAGDAGDDAMDTEPEVGGDSNAENPSKE 393
Query: 261 -----WHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
W Y+E + ++ + +W+ S+K+TM+ ++
Sbjct: 394 SDVTEWVYNEENLQKLIENTQCEWAQFSVKSTMIRNVL 431
>gi|19922728|ref|NP_611646.1| CG3045 [Drosophila melanogaster]
gi|7291383|gb|AAF46811.1| CG3045 [Drosophila melanogaster]
gi|16182987|gb|AAL13605.1| GH14326p [Drosophila melanogaster]
gi|220945178|gb|ACL85132.1| CG3045-PA [synthetic construct]
gi|220955082|gb|ACL90084.1| CG3045-PA [synthetic construct]
Length = 499
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 186/338 (55%), Gaps = 48/338 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LKI Y G++Y GF Q S++TI +L +AL +TCLIE + S++ CGRTD VS
Sbjct: 99 RHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALARTCLIESRATSNYHRCGRTDKEVS 158
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSA 115
AFCQV+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSA
Sbjct: 159 AFCQVISIDLRSK--HPPESQLDPTALSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSA 216
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RFDC+ R Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V
Sbjct: 217 RFDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARV 276
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ Q N S +++ I++ FLWHQIRCIM+VL LVGQ E P +I L+D+E
Sbjct: 277 EACDQTNHTN-SGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPGVISDLLDVESN 335
Query: 236 PRKPVYPMVRGEPLNLY---------------------------------------HTEF 256
P KP Y G PLNL+ H E
Sbjct: 336 PCKPQYTPAIGLPLNLFRCDFRDHTTRSVNHPSSGDADEEAMDTAADESNDLNAPEHLER 395
Query: 257 DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
D W Y+E + ++ + +W+ S+K+TM+ +++
Sbjct: 396 DLTAWIYNEENLQKLIENTQCEWTQFSVKSTMIRNVLQ 433
>gi|384499620|gb|EIE90111.1| hypothetical protein RO3G_14822 [Rhizopus delemar RA 99-880]
Length = 444
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/267 (43%), Positives = 165/267 (61%), Gaps = 15/267 (5%)
Query: 2 RPIALKILYQGFNYHGF-QIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
R IALK+ Y G+NY GF ++ + T+ + KALQK LI E+ +++ GRTD GV
Sbjct: 73 RRIALKVAYLGWNYCGFAHLKEKNIPTVEGEIFKALQKCSLITSPEECNYSRGGRTDKGV 132
Query: 61 SAFCQVVTLKIRS---KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
S QV+ L +RS KL E DD +LPY+ M+N+ LP DI+++AW+PV ++ARF
Sbjct: 133 SGLGQVIALDVRSTQRKLIK--EHGDDRDLPYINMINSFLPEDIRILAWAPVATTFNARF 190
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DCL R YKY+F + G DI+ M +AA Y++G+HDFRN C ++ + ++ R +
Sbjct: 191 DCLSRTYKYFFKKEGQDIERMREAASYMIGSHDFRNFCLLDAARNLQHYTREII------ 244
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
+ + N + E ++ GFLWHQ+R IMSVLFLVGQ E P IIQ L++I+K P
Sbjct: 245 ---SFEINPVEQDFYEVKLKGTGFLWHQVRYIMSVLFLVGQRLEHPAIIQDLLNIDKIPA 301
Query: 238 KPVYPMVRGEPLNLYHTEFDNLTWHYD 264
+P YP+ G PL LY E N+ W YD
Sbjct: 302 RPDYPLASGIPLMLYDCEIQNIKWIYD 328
>gi|312093536|ref|XP_003147717.1| hypothetical protein LOAG_12156 [Loa loa]
gi|307757118|gb|EFO16352.1| hypothetical protein LOAG_12156 [Loa loa]
Length = 414
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 180/310 (58%), Gaps = 23/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL +Y G+ Y+G Q TI + KAL KT L+E E + CGRTD GVS
Sbjct: 32 RRIALMFMYFGWEYNGLVEQQEIAGTIEEEMRKALMKTKLVESWENCGWNRCGRTDKGVS 91
Query: 62 AFCQVVTLKIRSK------------LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV +L +RS + E + EL Y+KMLN+ LP +I+V+AW+PV
Sbjct: 92 AFKQVASLIVRSNEPEGEGVFWPAIAHTSSETAVKGELQYVKMLNSTLPTNIRVLAWAPV 151
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV--NFR 167
PE +SAR+ C R Y Y FP+A DI+AM +A Q+LVG HDFRN C++++ G V N+
Sbjct: 152 PENFSARYRCTQRTYTYAFPRANFDIEAMRQACQFLVGEHDFRNFCRIDMNKGRVEMNYI 211
Query: 168 RLVTHAGVTSAWQNVQFND------SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
R +++A ++ N +H+ + ++ GFLWHQIRCIM++L +G GNE
Sbjct: 212 RTISYADISLISNNSLLASKQSDEVTHYEFLQLTVKGSGFLWHQIRCIMALLCEIGLGNE 271
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL--TWHYDEIEVSHVLRDLHEDW 279
KPE+I +L+DI+ P KP+Y + PL L+ +D + +W +D + V + + + W
Sbjct: 272 KPEVISELLDIKLTPSKPIYGLAPAFPLCLFDCVYDGMEFSWKWDINSLKSVRKLILKTW 331
Query: 280 S-LLSIKATM 288
+ S+ AT+
Sbjct: 332 AHYQSLSATL 341
>gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi]
gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi]
Length = 430
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 185/318 (58%), Gaps = 20/318 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALKI Y GFNY G Q + NTI HHL +AL+ LIE ++ F CGRTD GVS
Sbjct: 68 RHIALKIAYLGFNYQGLSKQLHTPNTIEHHLFEALKTLKLIEHEDNCEFTKCGRTDKGVS 127
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV+ R +P + Y++++N+ LP DI+V+AW PV + + ARF CL
Sbjct: 128 ALGQVVSFNCR---YNPKKND------YVRLINSLLPDDIRVLAWCPVSKDFDARFGCLQ 178
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA--W 179
R YKY+F + L+I+ M +AA + VG HDFRN CK+N V NFRR + + +
Sbjct: 179 RTYKYYFIRQNLNIEKMKQAAAHFVGEHDFRNFCKIN--EEVTNFRRRILSMEIIKSDLL 236
Query: 180 QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKP 239
ND + I E + FLWHQ+RC+ ++LFL+G+G E+P +I +L+DIEKY +P
Sbjct: 237 HQQHGNDEYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGKEEPSVIPELLDIEKYKARP 296
Query: 240 VYPMVRGEPLNLYHTEFDNLTW-HYDEIEVSH--VLRDLHEDWSLLSIKATMLG---EMI 293
VY + PL LY F++L W H +++ S + +E W S+K+TM +
Sbjct: 297 VYHIASEFPLVLYDCVFEDLKWIHTNDMISSQADLTNHFYEMWRSSSLKSTMYNIFYQAA 356
Query: 294 KDTVRESKCTMG-DLDIN 310
+T+ ++ T G DL+ N
Sbjct: 357 NNTLVDNSNTFGKDLNTN 374
>gi|340378747|ref|XP_003387889.1| PREDICTED: tRNA pseudouridine synthase 3-like [Amphimedon
queenslandica]
Length = 434
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 17/308 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A K+LY G++Y G +Q ++ TI L AL KT LIED +S+++ CGRTD GVS
Sbjct: 55 RHVAFKVLYLGWDYSGLALQDTTTETIEAKLFDALLKTKLIEDPSQSNYSRCGRTDKGVS 114
Query: 62 AFCQVVTLKIRSKL-----------TSPGEESDDN--ELPYLKMLNNNLPRDIKVVAWSP 108
AF QV+TL +R+ L + E D ELPYL MLN LP+DIK+ AW+P
Sbjct: 115 AFGQVITLDVRTALLEGEGVIVPEGSKAIERKGDKIIELPYLNMLNRVLPKDIKLSAWAP 174
Query: 109 VPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKM---NVGNGVVN 165
VP ++SARF+ + R YKY+FP +DI+ M + A+ +G HDFRN CK ++ +
Sbjct: 175 VPPQFSARFNTMHRIYKYYFPMGSMDIELMREGARKFIGHHDFRNFCKYDTNDLATQSIK 234
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
F R + + QN SH + + FL HQIRC+MS+LFLVG E+P I
Sbjct: 235 FDRTILDIKIEPLDQNSSVVSSHQ-LYACTVTGLAFLRHQIRCMMSLLFLVGHKLEQPSI 293
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIK 285
I ++DI + P KP Y M PL L+ F ++ W Y + +V+ +L + W+ +
Sbjct: 294 IDYMLDISQCPGKPQYGMAADFPLVLHDCVFQDIEWQYLDYSYVNVISELQKAWTYHMTQ 353
Query: 286 ATMLGEMI 293
A ++ MI
Sbjct: 354 AMIVKSMI 361
>gi|195026984|ref|XP_001986382.1| GH21331 [Drosophila grimshawi]
gi|193902382|gb|EDW01249.1| GH21331 [Drosophila grimshawi]
Length = 503
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 198/368 (53%), Gaps = 49/368 (13%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LK++Y G++Y GF Q S+ TI L +AL +TCLIE + S++ CGRTD VS
Sbjct: 97 RHVLLKVMYFGWDYQGFACQEDSNETIEAFLFRALIRTCLIESRATSNYHRCGRTDKEVS 156
Query: 62 AFCQVVTLKIRSKLTSPGE-ESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARF 117
AFCQV+++ +RSK + ESD E+ Y +LN LP++I+ V+W P+ YSARF
Sbjct: 157 AFCQVISIDLRSKHAPDVQLESDSLATEIDYCSLLNRVLPKNIQCVSWMPLRNHVYSARF 216
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT- 176
DC+ R Y+Y+FP+ LDI+AM A +V DFRN CKM+V NGV N+ R + A +
Sbjct: 217 DCISRTYRYYFPKGDLDIEAMRMACDLIVCHGDFRNFCKMDVHNGVTNYMRNLQAARIQA 276
Query: 177 ---SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+A + +S + + I++ FLWHQIRCIM+VL LVGQ +E+P II +L+D+
Sbjct: 277 CEGTAVEVENDLNSGYTMYYLEIQANAFLWHQIRCIMAVLLLVGQKHEEPVIISKLLDVV 336
Query: 234 KYPRKPVYPMVRGEPLNLYHTEF------------------------------------- 256
P KP Y G PLNL+ +F
Sbjct: 337 SNPCKPQYTPAIGLPLNLFRCDFRANTTRRTNPSASYSAPDEDNAADDASSFKMETAAPC 396
Query: 257 --DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK--DTVRESKCTMGDLDINHL 312
D W Y E + ++ ++ +W+ S+K TM+ ++ + + + KC ++ L
Sbjct: 397 EPDLTDWVYSEENLQKLVENVQNEWTQFSVKCTMIRNTLEHLEMLVQQKCKPQKINAQAL 456
Query: 313 IEGEFSRP 320
+ + ++P
Sbjct: 457 LLQDAAKP 464
>gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens]
gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740, partial [Trichoplax
adhaerens]
Length = 279
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/269 (43%), Positives = 169/269 (62%), Gaps = 9/269 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A K+ Y G++Y+G Q + TI L AL KTCLIE++ S+++ GRTD GVS
Sbjct: 9 RRVAFKLAYIGWDYYGLASQEGIEKTIEAELFNALTKTCLIENRTNSNYSRSGRTDKGVS 68
Query: 62 AFCQVVTLKIRSKLTS-PGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
A QV++L +R+ L S PG + +EL Y+K+LN LP DI+++AW+PV +SARF+
Sbjct: 69 ALGQVISLNVRTNLASGPGVIVETVSELSYVKLLNKVLPGDIRILAWAPVDNDFSARFNT 128
Query: 120 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW 179
+ R YKY+FP+A ++I+AM++AAQ L G HDFRN CKM++ N V NFRR + V S
Sbjct: 129 VSRTYKYYFPRANMNIEAMNEAAQRLKGEHDFRNFCKMDLAN-VSNFRREILSIKVQSIE 187
Query: 180 QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKP 239
+ +CE + + FLWHQ+RC++++LFL+GQG E II ++DIEK +KP
Sbjct: 188 TPYVLQNQGFEMCEIIVCGKAFLWHQVRCMVAILFLIGQGLEDANIINYMLDIEKCNKKP 247
Query: 240 VYPMVRG------EPLNLYHTEFDNLTWH 262
Y M G L L ++ +L +H
Sbjct: 248 QYGMASGMRTYARSLLGLLSDDYHSLYFH 276
>gi|195382396|ref|XP_002049916.1| GJ20484 [Drosophila virilis]
gi|194144713|gb|EDW61109.1| GJ20484 [Drosophila virilis]
Length = 509
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 187/338 (55%), Gaps = 46/338 (13%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + +K++Y G++Y GF Q S +TI +L +AL +TCLIE + S++ CGRTD VS
Sbjct: 98 RHVLIKVMYFGWDYQGFACQEDSMDTIEAYLFRALIRTCLIESRATSNYHRCGRTDKEVS 157
Query: 62 AFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARF 117
AFCQV+++ +RSK + E+ +E+ Y +LN LP++I+ V+W P+ YSARF
Sbjct: 158 AFCQVISIDLRSKHAPDVQMEPEALSSEIDYCSLLNRVLPKNIQCVSWMPLRNPAYSARF 217
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DC+ R Y+Y+FP+ LDI+AM A Q LV DFRN CKM+V NGV N+ R + A +
Sbjct: 218 DCISRTYRYYFPKGDLDIEAMRIACQSLVCHGDFRNFCKMDVHNGVTNYMRNLQGAAIKP 277
Query: 178 A-WQNVQF-NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
++Q ++S + + I+ FLWHQIRCIM+VL LVGQ +E+P +I +L+D+
Sbjct: 278 CDNTDIQMHSNSGYAMYYLEIQGNAFLWHQIRCIMAVLLLVGQKHEQPCVISKLLDVVSN 337
Query: 236 PRKPVYPMVRGEPLNLYHTEF--------------------------------------- 256
P KP Y G PLNL+ EF
Sbjct: 338 PCKPQYTPAIGLPLNLFRCEFRAHSTRQAIPPASSSAAIDDLDDDVDLAAQKPENVEATK 397
Query: 257 -DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
D W Y E + ++ ++ +W+ S+K TM+ ++
Sbjct: 398 SDLTDWVYSEENLQKLIENVQCEWTQFSVKCTMIRNVL 435
>gi|189236260|ref|XP_974416.2| PREDICTED: similar to pseudouridylate synthase [Tribolium
castaneum]
Length = 275
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 155/237 (65%), Gaps = 16/237 (6%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
R + LK LY G++Y G+ Q + NTI HH+ AL KTCLIE++ +++ CGRTD GV
Sbjct: 55 FRHVLLKFLYLGWDYQGYVTQEDTVNTIEHHVFNALIKTCLIENRSSANYHRCGRTDKGV 114
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
++L +RS G++ + +E+ Y K+LN LP +I+ VAW PV +SARFDC
Sbjct: 115 ------ISLDLRSN----GDDFE-SEINYCKILNRVLPENIQFVAWCPVESAFSARFDCK 163
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R YKY+FP++ LDIDAM AA YLVGTHDFRN CKM+V NGVV F+R + + S +Q
Sbjct: 164 NRTYKYFFPKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNILSVDI-SLFQ 222
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
D ++I I+ FLWHQIRCI+ +L LVGQG EKPE++ L+DI + PR
Sbjct: 223 ----EDERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLDITRNPR 275
>gi|357119728|ref|XP_003561586.1| PREDICTED: tRNA pseudouridine synthase 3-like [Brachypodium
distachyon]
Length = 450
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/295 (39%), Positives = 175/295 (59%), Gaps = 8/295 (2%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALKI+Y G ++GF + ++ T+ + K L++ L+ +++S ++ CGRTD GV
Sbjct: 114 RLVALKIMYFGQRFYGFASEAHTEPTVESEIFKVLERARLLVGSRKESCYSRCGRTDKGV 173
Query: 61 SAFCQVVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
SA QV++L +RS L PG D +E+ Y+K+LN LPRDI+V+ W PV + ARF
Sbjct: 174 SATGQVISLYLRSNLKDPGGNVLDERSEIDYVKVLNRMLPRDIRVIGWCPVAADFLARFS 233
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
CL R YKY F + GLD+ M KAA +G HDFRN CKM+ N V N+RR +T + SA
Sbjct: 234 CLGREYKYLFWKGGLDVPKMQKAASKFIGEHDFRNFCKMDAAN-VSNYRRHITDFDI-SA 291
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+ ND + NI+ FLWHQ+RC+++VLFL+GQG E P ++ L+DI + PRK
Sbjct: 292 YDERSNND---ELWAMNIKGSAFLWHQVRCMVAVLFLIGQGLESPCVVDSLLDITRTPRK 348
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
P Y M PL L +FD +++ ++ L ++ ++A + E +
Sbjct: 349 PQYTMAPELPLILRSCKFDKVSFMSSSDASQALIEHLKDEHHQYMLQAAIFHEAL 403
>gi|440803221|gb|ELR24130.1| tRNA pseudouridine synthase A, putative [Acanthamoeba castellanii
str. Neff]
Length = 488
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 187/335 (55%), Gaps = 17/335 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALK+ Y G+ Y G +Q +DNTI HL+ AL++ LI D+ S++ GRTD GVS
Sbjct: 102 RYIALKLAYLGWQYDGLAVQNDTDNTIETHLIAALKRVKLITDRPSSNYNRSGRTDKGVS 161
Query: 62 AFCQVVT-LKIRSKLT-----------SPGEESD--DNELPYLKMLNNNLPRDIKVVAWS 107
A V + LK + + +P + SD E+PYLKM+N+ LP DI+V+AW+
Sbjct: 162 ALGNVRSNLKPANPIDENGAKAVIYADTPLDTSDPRKEEMPYLKMINSALPPDIQVLAWT 221
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
VP+ +SARF R YKY+F L ++ M +AA+ + G HDFR+ CKM+V N V NF
Sbjct: 222 TVPKDFSARFSTKHRTYKYFFLAENLQLERMREAAKKIEGEHDFRHFCKMDVVN-VHNFV 280
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + + A V + ++ I Q FLWHQ+R + ++LFLVG G E+P ++
Sbjct: 281 RTIYSFDIAPAESGVVPGVAEGSMYTMTICGQAFLWHQVRMMAAILFLVGSGQEEPTVVD 340
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
+L+D+ K+ +P Y M PL + +D + W YD + VS V + E W LSI+ T
Sbjct: 341 ELLDVAKFEGRPHYQMASEIPLVFWEAAYDEIEWTYDPVAVSQVHKVFSERWKWLSIQ-T 399
Query: 288 MLGEMIKDTVRESKCTMGDLDINHLIEGEFSRPGR 322
+ + + + T+G +I E S+PG+
Sbjct: 400 AVAHAYRTFLEDRVVTVGRNEIK-WREHAASQPGK 433
>gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
Length = 459
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/263 (43%), Positives = 162/263 (61%), Gaps = 8/263 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCL-IEDKEKSSFACCGRTDSGV 60
R +ALK++Y G ++GF + +++ T+ + KAL++ L + +++S ++ CGRTD GV
Sbjct: 122 RLVALKVMYFGQRFYGFSSEGNTEPTVESEIFKALERAKLMVGSRKESCYSRCGRTDKGV 181
Query: 61 SAFCQVVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
SA QV++L +RS + G + D +E+ Y+K+LN LPRDI+V+ W PVP + ARF
Sbjct: 182 SATGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPADFHARFT 241
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
CL R YKY F + LDI M KAA +G HDFRN CKM+ N V N+RR +T + SA
Sbjct: 242 CLSREYKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAAN-VSNYRRRITEFTI-SA 299
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
ND +C I+ FLWHQ+RC+++VLFL+GQG E P ++ L+DI K PRK
Sbjct: 300 CDRRSNND---ELCSMMIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDITKTPRK 356
Query: 239 PVYPMVRGEPLNLYHTEFDNLTW 261
P Y M PL L FD +
Sbjct: 357 PQYKMAPELPLILRSCLFDKANF 379
>gi|384496190|gb|EIE86681.1| hypothetical protein RO3G_11392 [Rhizopus delemar RA 99-880]
Length = 450
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 158/271 (58%), Gaps = 10/271 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKS-SFACCGRTDS 58
R IAL++ Y G+NY GF Q + TI L KAL++ L+ + + S + CGRTD
Sbjct: 59 RKIALRVAYIGWNYIGFASQQDPERIPTIEDMLFKALKECKLVAEIDDSIDYTRCGRTDR 118
Query: 59 GVSAFCQVVTLKIRSK-LTS---PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
GVS QV+ L +RSK LTS P + E PY+ LN LP DI+V+AW+PVPE +S
Sbjct: 119 GVSGLGQVIALWVRSKKLTSDPSPDLLPAEQEFPYVDTLNRMLPPDIRVLAWAPVPEDFS 178
Query: 115 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
AR+ C R YKY+F + +DI+ M + +Y G HDFRN CKM+ + ++ R +
Sbjct: 179 ARYHCTSRTYKYFFSRGKMDIEKMRQGCKYFEGEHDFRNFCKMDPAKNIQSYDRHILSMT 238
Query: 175 VTSA--WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
V Q D + E ++ FLWHQ+R +MSVLFLVGQG E PE I+ ++DI
Sbjct: 239 VRPVDHTQTAHIGDG-TDFYEVELKGTAFLWHQVRYMMSVLFLVGQGLEPPETIRDVLDI 297
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY 263
EK P KP +PM PL LY EF ++ W Y
Sbjct: 298 EKVPSKPDFPMASDLPLVLYDCEFKDIEWFY 328
>gi|255726904|ref|XP_002548378.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
gi|240134302|gb|EER33857.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
Length = 437
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 168/269 (62%), Gaps = 18/269 (6%)
Query: 1 MRPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDK-EKSSFACCGRTD 57
MR +A K Y G+NY+G FQ++ + T+ +LK L K LI++ E+ F+ CGRTD
Sbjct: 73 MRFVAFKFAYLGWNYNGLAFQLEPTPLPTVEEIILKTLAKVKLIKEPIEEVKFSRCGRTD 132
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV+++++RS L+ + E DD E+ YL +LN NLP DIKV + P PE
Sbjct: 133 KGVSAMNQVISIELRSNLSKEDQANPELDDKEVDYLSILNANLPSDIKVHSICLRP-PED 191
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+Y+Y F + LDID M++ A G HDFRN CK++ + NF+R +
Sbjct: 192 FDARFSCISRHYRYIFKKQNLDIDLMNQGASLYQGIHDFRNFCKLDGSKQITNFQREIYS 251
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + + +D ++ C F+++ FLWHQ+RC++++LF +GQG EKPEI+ +L+D+
Sbjct: 252 SKI------LHLHDDYY--C-FDLKGSAFLWHQVRCMVAILFTIGQGLEKPEIVTELMDM 302
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
EKYP KP Y M PL LY EF + W
Sbjct: 303 EKYPTKPQYEMAHDIPLVLYDCEFPEMEW 331
>gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 438
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 17/304 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALK++Y G ++GF + D T+ + KAL++T LI DK++ ++ CGRTD GV
Sbjct: 102 RYVALKVMYFGQRFYGFSSEGQMDPTVESEIFKALERTRLLIGDKKEIQYSRCGRTDKGV 161
Query: 61 SAFCQVVTLKIRSKLT-----------SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV 109
SA QV+ L +RSK+ + ++ + E+ Y+++LN LP DI+++ W PV
Sbjct: 162 SAVGQVIALLLRSKVKDIDEIGKVFGETASQKHSEGEIDYVRVLNRVLPNDIRIIGWCPV 221
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
P +SARF CL R YKY+F L++ AM A + +G HDFRN CKM+ N V N+RR
Sbjct: 222 PNDFSARFSCLSREYKYFFRGDNLNLLAMESAGKKFIGEHDFRNFCKMDAMN-VHNYRRN 280
Query: 170 VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
+T ++ + + N + IR FLWHQ+RC+++VLF++GQG E P++I L
Sbjct: 281 ITSFEISPCHERYEGNQ----LFAIKIRGSAFLWHQVRCMVAVLFMIGQGLESPDVIDVL 336
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
+D + PRKP YPM PL L+ +F+ L + + L + L ++A +
Sbjct: 337 LDTVRTPRKPQYPMAPEIPLVLHSCDFEGLQFTCSTDAGKALRTHLENECRLYQLQAAIF 396
Query: 290 GEMI 293
E I
Sbjct: 397 HEAI 400
>gi|268529206|ref|XP_002629729.1| C. briggsae CBR-TAG-124 protein [Caenorhabditis briggsae]
Length = 401
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 17/309 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IA++ Y G+ + G Q ++ NT+ HHL++AL KT +IED K F+ CGRTD GVS
Sbjct: 30 RKIAIQFFYLGWEHDGLVQQPNTQNTVEHHLMEALIKTHIIEDSIKCDFSRCGRTDKGVS 89
Query: 62 AFCQVVTLKIRSKLT---------SPGEE------SDDNELPYLKMLNNNLPRDIKVVAW 106
AF Q RS S E+ S D ELPY+KMLN LP+ I+V AW
Sbjct: 90 AFKQTAAFLARSTCPDHPNVFWSDSTAEDVKNSYKSKDEELPYIKMLNGVLPKTIRVFAW 149
Query: 107 SPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
+PV ++ARFDC R YKY FP+AGLD++ M +AA+ L+G HD+ N C++++ +
Sbjct: 150 APVAPTFNARFDCNRRTYKYSFPKAGLDLEKMREAAKLLIGEHDYSNFCQIDMNKMRLEQ 209
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
VT + + +++ E + GFLWH IR I++VL V +GNE+P ++
Sbjct: 210 SYTRKIYDVTVEQVSTHSENDIYSMVELTVSGSGFLWHMIRYIVTVLQEVARGNEQPSLV 269
Query: 227 QQLVDIEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVSHVLRDLHEDWSLLSI 284
L+D+ KYP +P Y + PL L+ + +++ WH + + + L + W+
Sbjct: 270 SDLLDLSKYPSRPHYTLSSDTPLCLFDCGYKQEDVQWHIHDATLKTTVSGLQKSWATYQT 329
Query: 285 KATMLGEMI 293
+ M+ MI
Sbjct: 330 RCRMMENMI 338
>gi|324501041|gb|ADY40469.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
gi|324504466|gb|ADY41930.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
Length = 388
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 182/315 (57%), Gaps = 35/315 (11%)
Query: 9 LYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVT 68
LY G+ Y G Q + NT+ + AL +T LIE K + GRTD GVSAF Q+ +
Sbjct: 3 LYYGWEYEGLVQQQDTVNTVEEVIKDALLRTRLIESWNKCEWIRSGRTDKGVSAFRQIAS 62
Query: 69 LKIRS------------------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP 110
L +RS ++T P +EL YLKMLN LP++I+V+AW+PV
Sbjct: 63 LIVRSSDPEGEHVFWPENADPHSRITPP-----HSELMYLKMLNGVLPKNIRVLAWAPVA 117
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV--NFRR 168
++ARF C R YKY FP+ D++A+ KA L+G HDFRN+C++++ V ++ R
Sbjct: 118 LDFNARFSCTKRVYKYAFPRGDFDLEAIRKACSLLIGEHDFRNICRIDLNKARVEMSYVR 177
Query: 169 LVTHAGVT---SAWQNVQFND-----SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+V A ++ + + V+ + S +++ EF + S GFLWHQIRC+M++++ +G+GN
Sbjct: 178 MVFDASISVVLESGERVEVSSEPEPHSPYSLVEFTMISSGFLWHQIRCVMALMYEIGKGN 237
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD--NLTWHYDEIEVSHVLRDLHED 278
EKPE+I +L+DIEK PRKP Y + PL L+ + +L W++D I + + L
Sbjct: 238 EKPEVISELLDIEKTPRKPAYGLAPSSPLCLFDCSYGDIDLKWNWDLISLHKIKSHLLNT 297
Query: 279 WSLLSIKATMLGEMI 293
W+ K+ +L +MI
Sbjct: 298 WADFKTKSMILRKMI 312
>gi|194706182|gb|ACF87175.1| unknown [Zea mays]
gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays]
gi|414867030|tpg|DAA45587.1| TPA: pseudouridylate synthase isoform 1 [Zea mays]
gi|414867031|tpg|DAA45588.1| TPA: pseudouridylate synthase isoform 2 [Zea mays]
gi|414867032|tpg|DAA45589.1| TPA: pseudouridylate synthase isoform 3 [Zea mays]
gi|414867033|tpg|DAA45590.1| TPA: pseudouridylate synthase isoform 4 [Zea mays]
Length = 457
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 161/263 (61%), Gaps = 8/263 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCL-IEDKEKSSFACCGRTDSGV 60
R +ALK++Y G ++GF + + + T+ + KAL++ L + ++++S ++ CGRTD GV
Sbjct: 120 RLVALKVMYFGQRFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGV 179
Query: 61 SAFCQVVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
SA QV++L +RS + G + D +E+ Y+K+LN LPRDI+V+ W PVP + ARF
Sbjct: 180 SATGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPADFHARFT 239
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
CL R YKY F + LDI M KAA +G HDFRN CKM+ N V N+RR +T + SA
Sbjct: 240 CLSREYKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAAN-VSNYRRHITEFTI-SA 297
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
ND +C I+ FLWHQ+RC+++VLFL+GQG E P ++ L+DI K RK
Sbjct: 298 CDRRSNND---ELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRK 354
Query: 239 PVYPMVRGEPLNLYHTEFDNLTW 261
P Y M PL L FD +
Sbjct: 355 PQYKMAPELPLILQSCLFDKANF 377
>gi|354547215|emb|CCE43949.1| hypothetical protein CPAR2_501740 [Candida parapsilosis]
Length = 440
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 176/302 (58%), Gaps = 20/302 (6%)
Query: 1 MRPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLI-EDKEKSSFACCGRTD 57
+R +AL+ Y G+NY+G +Q + + T+ +LK L K LI E ++ F+ CGRTD
Sbjct: 81 LRFVALRFAYLGWNYNGLAYQFEPTPLPTVEETILKTLSKIKLIPEPIDQVEFSRCGRTD 140
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV+++K+RS LT ++S DD E+ YL ++N NLP DIKV + P P
Sbjct: 141 KGVSAMNQVISIKLRSNLTPEEQQSSTNDDREIDYLTIINANLPSDIKVHSICLHP-PAD 199
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C R+Y+Y F + LDIDAM+KAA+Y G HDFRN CK++ + NF R +
Sbjct: 200 FDARFSCKNRHYRYLFKSSNLDIDAMNKAAEYYQGQHDFRNFCKLDGSKQITNFERFIYS 259
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + + D + C F++ FLWHQ+RC++++LFLVGQ EKPEI+ L+DI
Sbjct: 260 SKI------IHLEDDLY--C-FDLVGTAFLWHQVRCMVAILFLVGQHLEKPEIVTDLMDI 310
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY--DEIEVSHVLRDLHEDWSLLSIKATMLG 290
KYP KP Y M PL LY EF + W +E + + ++ LSIK M
Sbjct: 311 TKYPTKPQYEMANDIPLVLYDCEFPPMQWKQFDNEYKFNRIMNGFKGMCYDLSIKTKMSS 370
Query: 291 EM 292
M
Sbjct: 371 IM 372
>gi|320582058|gb|EFW96276.1| Non-essential tRNA:pseudouridine synthase [Ogataea parapolymorpha
DL-1]
Length = 404
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 176/301 (58%), Gaps = 18/301 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIE--DKEKSSFACCGRTD 57
R IALK Y G+NYHG Q + N T+ +LKAL+KT LI D F+ CGRTD
Sbjct: 58 RRIALKFSYLGWNYHGLAYQNDTSNIPTVELFILKALEKTKLIRNLDPTDCDFSRCGRTD 117
Query: 58 SGVSAFCQVVTLKIRSKLTS---PGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L +RS LT +D EL Y+K+LN LP DI++ + P PE
Sbjct: 118 KGVSAMNQVISLVVRSNLTQDEMANPLNDVKELDYVKILNKVLPEDIRIHSICLRP-PEG 176
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF CL R+YKY+F QA L+I+ M +AA Y VG DFRN CK++ +VN++R +
Sbjct: 177 FDARFSCLSRHYKYFFEQANLNIEKMQQAASYFVGEQDFRNFCKVDGSKQIVNYKRKI-- 234
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
++S+ + +F H F++R FLWHQ+R +MS+LFLVGQ E+PEI+++L+D+
Sbjct: 235 --ISSSIERTKFG---HKTYVFSLRGSAFLWHQVRSMMSILFLVGQELEEPEIVRKLLDV 289
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFD-NLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGE 291
+ +P +P Y + PL LY EFD ++ W ++ W L K T+
Sbjct: 290 KLFPGRPNYTIASPLPLVLYDCEFDHSVVWSKTLTSDRIQFTKFNQIWVDLGAKYTIATT 349
Query: 292 M 292
M
Sbjct: 350 M 350
>gi|226533212|ref|NP_001145731.1| uncharacterized protein LOC100279238 [Zea mays]
gi|219884209|gb|ACL52479.1| unknown [Zea mays]
gi|414867029|tpg|DAA45586.1| TPA: pseudouridylate synthase [Zea mays]
Length = 486
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 161/263 (61%), Gaps = 8/263 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCL-IEDKEKSSFACCGRTDSGV 60
R +ALK++Y G ++GF + + + T+ + KAL++ L + ++++S ++ CGRTD GV
Sbjct: 149 RLVALKVMYFGQRFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGV 208
Query: 61 SAFCQVVTLKIRSKLTSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
SA QV++L +RS + G + D +E+ Y+K+LN LPRDI+V+ W PVP + ARF
Sbjct: 209 SATGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPADFHARFT 268
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
CL R YKY F + LDI M KAA +G HDFRN CKM+ N V N+RR +T + SA
Sbjct: 269 CLSREYKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAAN-VSNYRRHITEFTI-SA 326
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
ND +C I+ FLWHQ+RC+++VLFL+GQG E P ++ L+DI K RK
Sbjct: 327 CDRRSNND---ELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRK 383
Query: 239 PVYPMVRGEPLNLYHTEFDNLTW 261
P Y M PL L FD +
Sbjct: 384 PQYKMAPELPLILQSCLFDKANF 406
>gi|430813781|emb|CCJ28906.1| unnamed protein product [Pneumocystis jirovecii]
Length = 353
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 179/303 (59%), Gaps = 13/303 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
R IA K Y G+ Y+G Q + T+ + AL+K LI+ + +F+ CGRTD G
Sbjct: 7 RYIAFKFAYLGWYYNGLVTQGNKTQLPTVEETIFFALKKAKLIDHERNCNFSRCGRTDKG 66
Query: 60 VSAFCQVVTLKIRS-KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAW-SPVPEKYSARF 117
V+A QV+ L +RS K + E +E+ Y+ +LN LP+ I+++AW S +P +SARF
Sbjct: 67 VTAIGQVMALNVRSNKPFNEDSEEKWSEIKYIDILNKLLPKTIRILAWCSDLPSDFSARF 126
Query: 118 DCLFRNYKYWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
C R+YKY F P L+I+ M KAA Y +G HDFRN CK++ + NF R++T +
Sbjct: 127 SCQKRHYKYLFFKDSPNVQLNIEKMSKAASYFIGKHDFRNFCKLDTSKQITNFTRIITRS 186
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ + + + NDS + F++ FLWHQ+R +++VLFLVGQ EKPEII+ L+D
Sbjct: 187 EI-NKYNTAEENDS---LYVFDLEGTAFLWHQVRSMIAVLFLVGQDLEKPEIIKTLLDTS 242
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVL-RDLHEDWSLLSIKATMLGEM 292
K +KP+Y + PL LY F NL W+Y E S L +++++ W I+ T++ +
Sbjct: 243 KTSQKPIYNIAHDLPLILYDCHFQNLNWNYGEETFSQSLYKNIYDLWHTAKIQNTIIDLL 302
Query: 293 IKD 295
+K+
Sbjct: 303 LKN 305
>gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
Length = 443
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 163/270 (60%), Gaps = 15/270 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALKI+Y G ++GF + + +I + KAL++T L+ DK+ S ++ CGRTD GV
Sbjct: 90 RYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGV 149
Query: 61 SAFCQVVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 111
S+ QV+ L +RS+L SP G+ + E Y+++LN LP DI+V+ WSP P
Sbjct: 150 SSTGQVIALFLRSRLKSPPGDSKAQVNGKTGERPEYDYVRVLNRALPDDIRVIGWSPAPV 209
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ ARF C R YKY+F + L++ AM A + +G HDFRN CKM+V N V + R VT
Sbjct: 210 DFHARFSCYAREYKYFFWRQNLNLSAMDIAGKKFIGEHDFRNFCKMDVAN-VHCYTRRVT 268
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
V S QN D +C F +R FLWHQIRC+++VLF++GQG E ++I L+D
Sbjct: 269 FFEV-SPCQNSHEGD---QLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLD 324
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+K PRKP Y + PL L EF+N+ +
Sbjct: 325 TKKTPRKPQYLLASEIPLVLRTCEFENVDF 354
>gi|339243255|ref|XP_003377553.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
Length = 471
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 193/373 (51%), Gaps = 65/373 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL + Y G++ GF Q +S NT+ + KAL +T LI+ E ++++ CGRTD VS
Sbjct: 37 RHIALMVAYLGWDLDGFCAQNNSQNTVESKIFKALIETKLIQSLETANYSRCGRTDKTVS 96
Query: 62 AFCQVVTLKIRS-------------------KLTSPGEESDDNELPYLKMLNNNLPRDIK 102
AF QV++L +RS K TS EL Y K+LN+ LP++I+
Sbjct: 97 AFSQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDYAKILNSVLPQEIR 156
Query: 103 VVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA------------------------- 137
V+AW+PV ++AR++C R YKY+FP+ L++
Sbjct: 157 VLAWAPVERTFNARYNCTSRQYKYFFPKGALNLKVSTVVDFLHFSAIVALFSNFRRGTIC 216
Query: 138 -----MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFND------ 186
M +A++ L+G HDFRN CK+++ + + V + + +VQF
Sbjct: 217 VYFQLMEQASKRLIGEHDFRNFCKIDMSKNEI-------QSCVRTVF-DVQFTKVNAGGL 268
Query: 187 SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRG 246
+ +C F I + FLWHQIRCIMSVLF +G+G E+P++I+ L++ E P KP Y MV G
Sbjct: 269 NSRTLCCFTIVANAFLWHQIRCIMSVLFAIGEGKEQPDVIEWLLNTELCPAKPQYSMVVG 328
Query: 247 EPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKD--TVRESKCTM 304
PL LY ++DNL WH+ E + + +L +IK ++ M+ ++ + T
Sbjct: 329 WPLVLYGCQYDNLEWHWKEGIIMECISNLQRTLVNFAIKVEIIENMMNSLLSLMPNNSTT 388
Query: 305 GDLDINHLIEGEF 317
DL+ ++ E
Sbjct: 389 ADLNTTSILHPEL 401
>gi|18399149|ref|NP_564438.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana]
gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana]
gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 446
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 162/270 (60%), Gaps = 15/270 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALKI+Y G ++GF + + +I + KAL++T L+ DK+ S ++ CGRTD GV
Sbjct: 90 RYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGV 149
Query: 61 SAFCQVVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 111
S+ QV+ L +RS+L SP G + E Y+++LN LP DI+V+ WSP P
Sbjct: 150 SSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPI 209
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ ARF C R YKY+F + L++ AM A + +G HDFRN CKM+V N V + R VT
Sbjct: 210 DFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKFIGEHDFRNFCKMDVAN-VHCYTRRVT 268
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
V S QN D +C F +R FLWHQIRC+++VLF++GQG E ++I L+D
Sbjct: 269 FFEV-SPCQNSHEGD---QLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLD 324
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+K PRKP Y + PL L EF+N+ +
Sbjct: 325 TKKTPRKPQYLLASEIPLVLRTCEFENVDF 354
>gi|148693448|gb|EDL25395.1| pseudouridine synthase 3, isoform CRA_a [Mus musculus]
Length = 361
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 156/251 (62%), Gaps = 20/251 (7%)
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPV 109
+S QV++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 2 LSTIPQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPV 61
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R
Sbjct: 62 EPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRT 121
Query: 170 VTHAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
+ A V Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII
Sbjct: 122 ILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIID 181
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD----EIEVSHVLRDLHEDWSLLS 283
+L++I+K P+KP Y M PL LY +F+N W YD E V+H L + W+ +
Sbjct: 182 ELLNIQKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVQEFNVTH----LQQLWANHA 237
Query: 284 IKATMLGEMIK 294
+K ML M++
Sbjct: 238 VKTHMLYSMLQ 248
>gi|328873128|gb|EGG21495.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum]
Length = 510
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 179/327 (54%), Gaps = 32/327 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALK+ Y G++YHGF Q ++ TI HL ALQKTCLI D ++ ++ GRTD GVS
Sbjct: 91 RFVALKVAYLGWHYHGFAAQQCTEETIEGHLFSALQKTCLIRDIKECNYTKSGRTDKGVS 150
Query: 62 AFCQVVTLKIRSKLTS-----PGEESDDN----------------------ELPYLKMLN 94
AF QV++L +RS L P DD+ E PY++MLN
Sbjct: 151 AFGQVISLYVRSNLKQGDGIIPPVIPDDDNKNQQQKNKNNNKKNNNHVTPIEYPYVRMLN 210
Query: 95 NNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNL 154
LP I+V+AW+PVP ++ARF L+R YKY+F AGLDI+AM +A + +G+HDF N
Sbjct: 211 GVLPPYIRVLAWTPVPFHFNARFSTLYRTYKYYFNPAGLDIEAMKEAGNHFLGSHDFSNF 270
Query: 155 CKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLF 214
CK+++ V +F R++ + QF + E I FLWHQIRC+M++L
Sbjct: 271 CKIDL-EAVKSFTRVILSFDIAPVPVG-QFQSG--GLYEATICGYAFLWHQIRCMMAMLL 326
Query: 215 LVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRD 274
L+GQ II+ L+D KP Y M PL LY +++L + Y+ ++
Sbjct: 327 LIGQKKFPTTIIKDLLDTSSAIAKPSYEMASEIPLVLYDCGYEDLEFIYENDSHQKLISS 386
Query: 275 LHEDWSLLSIKATMLGEMIKDTVRESK 301
+ W+ IKA + MI ++++E K
Sbjct: 387 MFNVWNDHYIKAAVSSLMI-NSLKEIK 412
>gi|356574565|ref|XP_003555416.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
Length = 426
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 164/271 (60%), Gaps = 16/271 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALK+ Y G ++GF + + T+ L KA +KT L+ DK++S ++ CGRTD GV
Sbjct: 82 RYVALKVTYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGDKKESQYSRCGRTDKGV 141
Query: 61 SAFCQVVTLKIRSKL----TSPG------EESDDNELPYLKMLNNNLPRDIKVVAWSPVP 110
S+ QV+ L +RS L T+ G +E + E+ Y+ +LN LP DI+++ W P P
Sbjct: 142 SSVGQVIALFLRSNLKISATNNGNSGVVLDEQHEGEIDYVGVLNRVLPNDIRIMGWCPAP 201
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+ ARF CL R YKY+F + L+I A+ A LVG HDFRN CKM+ N V N+RR +
Sbjct: 202 VDFHARFSCLSREYKYFFWKENLNIPAIEVAGNKLVGEHDFRNFCKMDAAN-VHNYRRCI 260
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
T ++S +V++ND+ + IR FLWHQ+RC+++VLF+VG+G E P +I L+
Sbjct: 261 TLFEISST--DVRYNDNQ--LWVIKIRGSAFLWHQVRCMVAVLFMVGKGLESPNVIDMLL 316
Query: 231 DIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
D + RKP Y M PL L EFDN+ +
Sbjct: 317 DTSRILRKPQYTMASEVPLVLQSCEFDNIKF 347
>gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 426
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 159/270 (58%), Gaps = 22/270 (8%)
Query: 4 IALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
IAL+ Y G+NY+G FQ + + T+ L +AL + LI+D SF+ CGRTD GVS
Sbjct: 74 IALRFAYLGWNYNGLAFQTEPTPLPTVEGKLFEALMRAHLIKDPSTCSFSRCGRTDKGVS 133
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCL 120
A QVV+L +R S++ + Y +LN LP DI+V+A+SP PE + ARF C+
Sbjct: 134 AMGQVVSLNVRY--------SEERPIAYCDVLNRLLPEDIRVIAYSPNPPEGFDARFSCV 185
Query: 121 FRNYKYWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
R+YKY F P LDI+ M +AA +G HDFRN CK++ + N+ R + H+ +
Sbjct: 186 RRHYKYLFLKQYPGGELDIERMSQAAALYLGEHDFRNFCKIDASKQITNYNRGILHSKII 245
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
D + F+++ FLWHQ+RC+M++LFLVGQ E +I+ +L+++EK P
Sbjct: 246 CV-------DPQKQLYAFDLQGTAFLWHQVRCMMAILFLVGQHLEPVDIVSELLNVEKNP 298
Query: 237 RKPVYPMVRGEPLNLYHTEFDNLTWHYDEI 266
KPVY M PL LY FDN+ W Y ++
Sbjct: 299 CKPVYDMASDLPLVLYDCVFDNIQWEYPQV 328
>gi|448515468|ref|XP_003867346.1| Deg1 protein [Candida orthopsilosis Co 90-125]
gi|380351685|emb|CCG21908.1| Deg1 protein [Candida orthopsilosis]
Length = 468
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 163/270 (60%), Gaps = 20/270 (7%)
Query: 1 MRPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLI-EDKEKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + + T+ +LK L K LI E ++ F+ CGRTD
Sbjct: 108 FRFIALRFAYLGWNYNGLAYQFEPTPLPTVEETILKTLSKIKLIPEPIDQVDFSRCGRTD 167
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE----SDDNELPYLKMLNNNLPRDIKV--VAWSPVPE 111
GVSA QVV++K+RS L SP E+ +DD E+ YL ++N NLP DIKV + P P+
Sbjct: 168 KGVSAMNQVVSIKLRSNL-SPEEQQDSTNDDKEIDYLTIINANLPSDIKVHSICLHPPPD 226
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ ARF C R+Y+Y F + LDI+AM+KAA Y G HDFRN CK++ + NF R +
Sbjct: 227 -FDARFSCKNRHYRYLFKASNLDIEAMNKAAGYYQGQHDFRNFCKLDGSKQITNFERFIY 285
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ + +++ F++ FLWHQ+RC++++LFLVGQ EKPEI+ L+D
Sbjct: 286 SSKIIHL---------ENDLFCFDLIGTAFLWHQVRCMVAILFLVGQHLEKPEIVTDLMD 336
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
I KYP KP Y M PL LY EF + W
Sbjct: 337 ITKYPTKPQYEMANDIPLVLYDCEFPPMDW 366
>gi|356534023|ref|XP_003535557.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
Length = 426
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 163/271 (60%), Gaps = 16/271 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALK++Y G ++GF + + T+ L KA +KT L+ +K++S ++ CGRTD GV
Sbjct: 82 RYVALKVMYFGKRFYGFASEAQMEPTVESELFKAFEKTRLLVGNKKESQYSRCGRTDKGV 141
Query: 61 SAFCQVVTLKIRSKL----TSPG------EESDDNELPYLKMLNNNLPRDIKVVAWSPVP 110
S+ QV+ L +RS L T+ G +E + E+ Y+++LN LP DI+++ W P P
Sbjct: 142 SSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDYVRVLNRVLPNDIRIMGWCPAP 201
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+ ARF CL R YKY+F + L+I AM A LVG HDFRN CKM+ N V N+RR +
Sbjct: 202 VDFHARFSCLSREYKYFFWKENLNIQAMESAGNKLVGEHDFRNFCKMDAAN-VHNYRRRI 260
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
++ +V++ND+ + IR FLWHQ+RC++ VLF+VG+G E P +I L+
Sbjct: 261 KLFEISPT--DVRYNDNQ--LWVIKIRGSAFLWHQVRCMVVVLFMVGKGLESPNVIDMLL 316
Query: 231 DIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
D + RKP Y M PL L EFDN+ +
Sbjct: 317 DTARILRKPQYTMASEVPLVLQSCEFDNIKF 347
>gi|367007832|ref|XP_003688645.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
gi|357526955|emb|CCE66211.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
Length = 422
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 182/324 (56%), Gaps = 29/324 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDKEKS--SFACCGRTD 57
R IALK Y G+NY+G IQ ++ T+ ++ A+ K LI S F+ CGRTD
Sbjct: 64 RFIALKFAYLGWNYNGLAIQKEPTALPTVEGVIVDAMNKCKLIPSINPSDFKFSRCGRTD 123
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L +RS LT + E D E+ Y+ +LN LP DI++ V P P
Sbjct: 124 KGVSAMNQVISLNVRSNLTPEQQMNSEFDSKEIQYINILNQLLPDDIRISAVCLRP-PTG 182
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C +R+YKY F + GL+I AM AA Y G HDFRN CK++ + NF+R +
Sbjct: 183 FDARFSCQYRHYKYLFKKDGLNISAMETAASYFKGEHDFRNFCKLDGSKQITNFKRTMMS 242
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + +Q N+ + C F++ FLWHQ+RC+ ++LFLVGQ E PEI+ QLVD+
Sbjct: 243 SQI------LQVNEEFY--C-FDLIGSAFLWHQVRCMTAILFLVGQNLEVPEIVSQLVDV 293
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSLLSIKA 286
P+KP+Y M PL LY +F + W Y+ I+ S ++ L + L S A
Sbjct: 294 ASNPQKPIYDMASDIPLILYDCKFPEMDWIMNNVNDYNSIKYSKIVEGLTLGYQLKSTVA 353
Query: 287 TMLGEMI----KDTVRESKCTMGD 306
T+ +++ +D +++ +GD
Sbjct: 354 TIFQDILPSADQDFQNKTRINLGD 377
>gi|226468594|emb|CAX69974.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum]
Length = 388
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 167/307 (54%), Gaps = 19/307 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALK+ Y G+ Y G Q T+ LL AL+K LIE++ + SF+ CGRTD GVS
Sbjct: 69 RHIALKLSYLGWQYCGLVPQGCYTLTVMDRLLDALEKAKLIENRSECSFSVCGRTDKGVS 128
Query: 62 AFCQ-------------VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSP 108
CQ V ++ S +E D E+ ++ +LN NLPRDI+V+AWSP
Sbjct: 129 GICQVVSFVSRSVVAEGVGVIEDSGCRISERQEVPDKEMDFVSILNRNLPRDIRVLAWSP 188
Query: 109 VPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
V +++ARFDC R+Y+Y+FP++GLDI++M A LVG HDFRN C + V+F R
Sbjct: 189 VSPEFNARFDCRRRSYEYYFPESGLDIESMIDAGNRLVGVHDFRNFCASRIEKDTVSFVR 248
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ + V +D H + + + GFL+HQIR I S+LF+VG+G E P +I
Sbjct: 249 EIFEVVINV----VDSSDHHTKLYCLCVSASGFLYHQIRYIASILFMVGRGYESPSVIDD 304
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVSHVLRDLHEDWSLLSIKA 286
++D+ K P KP Y + PL + D L W E +++ WS I++
Sbjct: 305 MLDLTKTPAKPQYQLAADYPLLFITGSYPEDCLNWETSEAAQLDLVKHYQRQWSEYRIRS 364
Query: 287 TMLGEMI 293
++ ++
Sbjct: 365 AIVKRIL 371
>gi|449446486|ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis
sativus]
Length = 455
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 108/270 (40%), Positives = 160/270 (59%), Gaps = 15/270 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R IALK++Y G ++GF + + T+ + +AL+K L+ +++S ++ CGRTD GV
Sbjct: 112 RYIALKVMYFGQRFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDKGV 171
Query: 61 SAFCQVVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 111
S+ QV+ L +RS L P GEE D E+ Y++++N LP DI+V+ W VP
Sbjct: 172 SSVGQVIALYLRSNLKDPPNGENSCHNGEEQHDGEIDYVRVINKVLPNDIRVLGWCSVPV 231
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R YKY+F A L+I AM +A + VG HDFRN CKM+ N V N+RR +
Sbjct: 232 GFSARFSCLRRKYKYFFWGANLNISAMERAGKKFVGEHDFRNFCKMDAAN-VHNYRRRIM 290
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
++ + N + FNI FLWHQ+RC+++V+F+VGQ E P++I L+D
Sbjct: 291 SFDISPCDVRTEGNP----LWAFNIEGSAFLWHQVRCMVAVVFMVGQDLEDPDVIDILLD 346
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+ PRKP Y M L L+ EF+ + +
Sbjct: 347 PLRTPRKPQYVMASENSLVLHSCEFEGVKF 376
>gi|71985046|ref|NP_496062.3| Protein TAG-124 [Caenorhabditis elegans]
gi|1353139|sp|Q09524.1|TG124_CAEEL RecName: Full=Probable tRNA pseudouridine synthase tag-124;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|3875428|emb|CAA87378.1| Protein TAG-124 [Caenorhabditis elegans]
Length = 402
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 181/328 (55%), Gaps = 25/328 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IA++ Y G+ + G Q + NT+ +H+++AL KT LIED K F+ CGRTD GVS
Sbjct: 30 RKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHLIEDWTKCDFSRCGRTDKGVS 89
Query: 62 AFCQVVTLKIRSKLTSPGE-----------------ESDDNELPYLKMLNNNLPRDIKVV 104
AF Q + +RS PG+ ++ ELPY+KMLN LP+ I+V
Sbjct: 90 AFKQTAAMVVRS--LCPGDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVLPKTIRVF 147
Query: 105 AWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK--MNVGNG 162
AW+PV + ++ARFDC R YKY F +A L+++ M + A+ LVG HDF N C+ MN
Sbjct: 148 AWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQGAELLVGEHDFSNFCQIDMNEKRL 207
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ ++ R V V + + +++ E + GFLWH IR I+++L +G+ NE+
Sbjct: 208 LQSYVRKVYEVKVEQV--STHPENDMYSMVELTVSGSGFLWHMIRYIVTILQEIGRENEQ 265
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVSHVLRDLHEDWS 280
P +I QL+D++KYP +P Y + PL L+ + +++ W + + + L + W+
Sbjct: 266 PSLISQLLDLKKYPSRPQYTLASDTPLCLFDCGYKSEDVEWKVHDYTLKSTVTGLQKTWA 325
Query: 281 LLSIKATMLGEMIKDTVRESKCTMGDLD 308
++ M+ M+ + ++ + GD +
Sbjct: 326 TYQARSRMMENMLGELTGMAEFSSGDAN 353
>gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
Length = 813
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 173/306 (56%), Gaps = 28/306 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLIEDK----EKSSFACCGR 55
R IALK+ Y G+ Y GF Q ++ T+ L +AL KT L+ + +S+A CGR
Sbjct: 454 RAIALKVAYLGWPYRGFASQGPEATTPTVEWTLFEALAKTRLVAAAADVFKTASYARCGR 513
Query: 56 TDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 115
TD GVS Q+VTL++RS S E EL Y+ +LN LP D++ + W+PV E+ +A
Sbjct: 514 TDRGVSGLGQIVTLQVRSNGASDPRE----ELDYVGLLNRALPSDVRALGWAPVDEELNA 569
Query: 116 RFDCLFRNYKYWFPQA-GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
RFDC +R YKY+F + LD++AM +AA+ G HDFRN C+M+ N V +F R V
Sbjct: 570 RFDCKWRQYKYFFEKTTALDLEAMGEAARAFEGVHDFRNFCRMDAEN-VKSFTRRVLECT 628
Query: 175 VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+ A + N+R FLWHQ+R + SVLF+VG G+E P ++++L+D+E+
Sbjct: 629 IEEAGDG--------KLMYINVRGTAFLWHQVRNMASVLFMVGLGHEPPSVVERLLDLER 680
Query: 235 YPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
PRKP YPM E L L+ + +D + + +S D +L ++A + +M
Sbjct: 681 TPRKPQYPMAPEESLLLWRSGYDESRLDVERMHIS--------DGALSQLEAHVASQMHS 732
Query: 295 DTVRES 300
VR +
Sbjct: 733 QRVRAA 738
>gi|149237835|ref|XP_001524794.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451391|gb|EDK45647.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 491
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 189/343 (55%), Gaps = 32/343 (9%)
Query: 1 MRPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLI-EDKEKSSFACCGRTD 57
MR +A+K Y G+NY+G FQ + T+ +LKAL K LI E E+ ++ CGRTD
Sbjct: 128 MRFVAIKFAYLGWNYNGLAFQNDPTPLPTVEEIILKALAKVKLIREPIEEVEYSKCGRTD 187
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDD----NELPYLKMLNNNLPRDIKV--VAWSPVPE 111
GVSA QV+++K+RS LT P E+ D E+ Y ++N NLP DIKV + P PE
Sbjct: 188 KGVSAMNQVISIKLRSNLT-PQEQQDPAFDAKEVDYFTVINANLPADIKVHAICLRP-PE 245
Query: 112 KYSARFDCLFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+ ARF C R+Y+Y F + LDID M +AA+Y G HDFRN CK++ + +F R +
Sbjct: 246 NFDARFSCKERHYRYLFRKTSTLDIDLMAQAAEYYEGLHDFRNFCKLDGSKQLTSFVRDI 305
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
+ + DS N+ F++ FLWHQ+RC++++LFLVGQ E PEI++ L+
Sbjct: 306 RRSKIIPL-------DSDGNLYCFDLIGNAFLWHQVRCMVAILFLVGQKLESPEIVKDLM 358
Query: 231 DIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLG 290
D+ K+P KP+Y M PL LY F + W + ++ + LH + LL+ + ++
Sbjct: 359 DVTKFPTKPMYEMANDIPLVLYDCVFPEMEWK--KFDLEYKFNILHTSFRLLAYELSIQN 416
Query: 291 EMIK-------DTVRESKCTMGDLDINHLIEGEFSRPGRILSE 326
E+ K RE + +L L +G GR SE
Sbjct: 417 EVTKIMENVLYADKREDAFKLANLKATPLGDG----VGRAFSE 455
>gi|341882334|gb|EGT38269.1| hypothetical protein CAEBREN_00927 [Caenorhabditis brenneri]
Length = 413
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 181/317 (57%), Gaps = 30/317 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IA + Y G+ + G Q + NT+ HL+ AL KT +IE E F+ CGRTD GVS
Sbjct: 42 RKIAFQFYYLGWEHDGLVQQLDTANTVEKHLMDALLKTKMIESWENCEFSRCGRTDKGVS 101
Query: 62 AFCQVVTLKIRSKL----------TSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAW 106
AF Q + +RS ++P + +S ELPY+KMLN LP+ I+V AW
Sbjct: 102 AFKQTAAVVVRSTCPQDPDVFWDESTPEDVKNNYKSKPEELPYVKMLNGLLPKTIRVFAW 161
Query: 107 SPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
+PV +++ARFDC R YKY F +A LD++ M +AA L+G HD+ N C+M+ +N
Sbjct: 162 APVKREFNARFDCNRRTYKYSFAKADLDLEKMREAASLLIGEHDYINFCQMD-----LNE 216
Query: 167 RRLVTHAGVTSAWQ-NVQFNDSH-----HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+RL T A V ++ V+ +H +++ E + GFLWH IR I++VL +G+GN
Sbjct: 217 KRL-TQATVRKIYEVKVEQVSTHPGNDIYSMVELTVSGSGFLWHMIRYIVTVLQEIGRGN 275
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVSHVLRDLHED 278
E+P ++ +L+D +KYP +P Y + PL L+ + +++ W YD ++ + L +
Sbjct: 276 EQPTLVSELLDTQKYPGRPHYTLSSDTPLCLFDCGYKEEDVAWIYDS-DIKKTIVGLQKT 334
Query: 279 WSLLSIKATMLGEMIKD 295
W+ ++ M+ M+++
Sbjct: 335 WAAYQARSRMMENMLEE 351
>gi|398019410|ref|XP_003862869.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
gi|322501100|emb|CBZ36178.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
Length = 499
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 165/294 (56%), Gaps = 16/294 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL++ Y G + G Q +DNT+ + AL++ LI + +F CGRTD GVS
Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
A ++L R+ T+ E +LP Y MLNN LP I++V + V + + ARF
Sbjct: 120 ALGNALSLTARASCTADAEP----QLPPLDYCSMLNNVLPSTIRIVGCALVDDAFDARFS 175
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
C+ R Y+Y+F GL+++AM +AA + +GTH+FRN CKM+V N V NF R V G+ +
Sbjct: 176 CVHRTYRYYFFHRGLNLEAMQEAAAFFLGTHNFRNFCKMDVVN-VSNFVRTVFSVGLHPS 234
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+ I IR+ FL+HQIRCIM VLFLVG+G E P ++Q L +E+ RK
Sbjct: 235 EALPEL------ISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTL--LERGDRK 286
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P YP+ G PL L+ FDN+ W + ++L + + L I+AT M
Sbjct: 287 PTYPLADGTPLVLWDCGFDNVQWQMSHCAFHAMEQELQDISTALLIRATSAAAM 340
>gi|146093784|ref|XP_001467003.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
gi|134071367|emb|CAM70054.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
Length = 499
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 165/294 (56%), Gaps = 16/294 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL++ Y G + G Q +DNT+ + AL++ LI + +F CGRTD GVS
Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
A ++L R+ T+ E +LP Y MLNN LP I++V + V + + ARF
Sbjct: 120 ALGNALSLTARASCTADAEP----QLPPLDYCSMLNNVLPSTIRIVGCALVDDTFDARFS 175
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
C+ R Y+Y+F GL+++AM +AA + +GTH+FRN CKM+V N V NF R V G+ +
Sbjct: 176 CVHRTYRYYFFHRGLNLEAMQEAAAFFLGTHNFRNFCKMDVVN-VSNFVRTVFSVGLHPS 234
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+ I IR+ FL+HQIRCIM VLFLVG+G E P ++Q L +E+ RK
Sbjct: 235 EALPEL------ISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTL--LERGDRK 286
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P YP+ G PL L+ FDN+ W + ++L + + L I+AT M
Sbjct: 287 PTYPLADGTPLVLWDCGFDNVQWQMSHCAFHAMEQELQDISTALLIRATSAAAM 340
>gi|238882564|gb|EEQ46202.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 491
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 21/307 (6%)
Query: 1 MRPIALKILYQGFNYHGF--QIQTSSDNTIAHHLLKALQKTCLIEDK-EKSSFACCGRTD 57
MR +A K Y G+NY+G Q++ + T+ LKAL K LI++ E+ F+ CGRTD
Sbjct: 131 MRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTD 190
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV+++ +RS +T + E DD E+ Y+ +LN NLP DIKV + P P+
Sbjct: 191 KGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSICLRPPPD- 249
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF CL R+Y+Y F + LDI+ M++ A+ G HDFRN CK++ + NF R +
Sbjct: 250 FDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVREIYQ 309
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + H + F+++ FLWHQ+RC++++LF +GQG E P II L+D
Sbjct: 310 SQIIHL---------HQDYYCFDLKGSAFLWHQVRCMVAILFTIGQGLESPSIITDLMDT 360
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY--DEIEVSHVLRDLHEDWSLLSIKATMLG 290
K+P KP Y M PL LY EF ++ W DE ++ V++ L +K T +
Sbjct: 361 NKFPTKPQYEMAHDIPLVLYDCEFPSMEWKSTDDEYKLHRVIQGFTRMQYDLQLK-TQMS 419
Query: 291 EMIKDTV 297
++++DT+
Sbjct: 420 QIMEDTL 426
>gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
Length = 446
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 178/323 (55%), Gaps = 27/323 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIE--DKEKSSFACCGRTD 57
R IALK Y G+NY+G IQ T+ +L+A+ K L+ + + F+ CGRTD
Sbjct: 95 RFIALKFAYLGWNYNGLAIQKEPTPLPTVEGVILEAMNKCRLVPSMNPQDYKFSRCGRTD 154
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKVVAWSPVPEK-Y 113
GVSA QV++LK+RS LT + + DN E+ Y+ +LN LP DI+V A P K +
Sbjct: 155 KGVSAMSQVISLKVRSNLTPEEQANSDNDSKEIQYVDILNQLLPDDIRVSAVCLRPPKDF 214
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
ARF C R+YKY F + GLD++ M +AA+Y G +DFRN CK++ + N++R + A
Sbjct: 215 DARFSCKHRHYKYLFNKEGLDLEKMEQAAKYYEGENDFRNFCKLDGSKQITNYKRTIISA 274
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ S C F++ FLWHQ+RC+M+ LFLVGQG E +I+ ++DIE
Sbjct: 275 SIMHV--------SGDFYC-FDLIGSAFLWHQVRCMMANLFLVGQGLEDHTLIKDMLDIE 325
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWH------YDEIEVSHVLRDLHEDWSLLSIKAT 287
K PRKP+Y M PL LY +F+++ W Y I+ + L + L + AT
Sbjct: 326 KTPRKPIYDMASDVPLILYDCKFEDMEWKEENLNDYKAIKYGKSVNTLMMGYQLKATVAT 385
Query: 288 MLGEMIK----DTVRESKCTMGD 306
+ + D + ++ +GD
Sbjct: 386 IFKNTLPTTDVDFQKRTRINLGD 408
>gi|330804770|ref|XP_003290364.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum]
gi|325079531|gb|EGC33127.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum]
Length = 449
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 176/323 (54%), Gaps = 40/323 (12%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A K+ Y G+ YHGF Q +D TI HL+KAL++T LI D + S++A GRTD GVS
Sbjct: 68 RYVAFKVSYVGWPYHGFAAQDCTDETIEGHLIKALKRTSLISDIKTSNYAKSGRTDKGVS 127
Query: 62 AFCQVVTLKIRSKLT------SPGEESD--------------------------DNELPY 89
AF QV++L +RS LT +P ++S E PY
Sbjct: 128 AFGQVISLYVRSNLTEGEGIIAPLDQSGGPISNRPSKNNNNNSNSNNQKQQNKAKEEFPY 187
Query: 90 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTH 149
+KMLN LP +I+V+ W+P+P +++RF LFR YKY+F +D++ M +A + +G H
Sbjct: 188 VKMLNGVLPPEIRVLGWAPIPFHFNSRFSTLFRTYKYFFTLNNMDLNLMKEAGNHYLGEH 247
Query: 150 DFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCI 209
DF N CKM++ N V +F+R++ + ++H+++ I+ FLWHQIRC+
Sbjct: 248 DFSNFCKMDIEN-VKSFKRVILEFSIEPV-------NNHNDLYVATIKGYAFLWHQIRCM 299
Query: 210 MSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVS 269
M++LFL+GQ II +L+D KP Y M PL L+ +++L + D
Sbjct: 300 MAMLFLIGQKKFPVSIIPELLDTSNGITKPPYEMASEIPLVLFDCGYEDLEFIIDNDAQE 359
Query: 270 HVLRDLHEDWSLLSIKATMLGEM 292
L ++ ++ IK+ ++ M
Sbjct: 360 RTLSVMNNLYNQFLIKSQVINLM 382
>gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 154/261 (59%), Gaps = 24/261 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQ----TSSDNTIAHHLLKALQKTCLIEDKEK----SSFACC 53
R IAL + Y G++YHGF Q ++ T+ L AL KT L+E + +A C
Sbjct: 11 RKIALHVCYLGWDYHGFASQGAANAAAPRTVEQALFDALAKTKLVESARDVFKVADYARC 70
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKY 113
GRTD GVS Q+VTL+ RS G E D EL Y+ +LN LP D++ + W+PV ++
Sbjct: 71 GRTDRGVSGLGQIVTLRARSN----GAEGVDEELDYVALLNRALPNDVRALGWAPVDDEL 126
Query: 114 SARFDCLFRNYKYWFPQA-GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ARFDC +R YKY+F + GLD+ AM +AA+ G HDFRN C+M+ N V +F R V
Sbjct: 127 NARFDCEWRQYKYFFEKTNGLDLGAMREAARAFEGVHDFRNFCRMDAEN-VKSFTRNVLE 185
Query: 173 AGVTSAWQNVQFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ +SH + N+R FLWHQ+RC+ SVLF+VG G+E P ++ +L+D
Sbjct: 186 CTI---------EESHDGKLMYINVRGTAFLWHQVRCMASVLFMVGLGHESPTVVTELLD 236
Query: 232 IEKYPRKPVYPMVRGEPLNLY 252
+E+ PRKP YPM L L+
Sbjct: 237 LERTPRKPQYPMAPEHALLLW 257
>gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|374109914|gb|AEY98819.1| FAGL003Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 175/317 (55%), Gaps = 23/317 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIED--KEKSSFACCGRTD 57
R IALK Y G+NY+G IQ T+ +L+A+ K ++ + F+ CGRTD
Sbjct: 82 RFIALKFAYLGWNYNGLAIQKDPTPLPTVEGTILEAMNKCRMVPSMVPQDYKFSRCGRTD 141
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-Y 113
GVSA QV++L++RS LT +E +D E+PY+ +LN LP DI++ A P K +
Sbjct: 142 KGVSAMNQVISLRVRSNLTPQEQEDPANDAREIPYIHILNQLLPDDIRISAICLRPPKGF 201
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
ARF C +R+YKY F ++GLD+ M +AA+ G HDFRN CK++ + NF+R + A
Sbjct: 202 DARFSCKYRHYKYLFNKSGLDLSKMEEAARLYEGEHDFRNFCKLDGSKQITNFKRTILSA 261
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ ++ F++ FLWHQ+RC+M+ LF+VGQG E +I L+D+E
Sbjct: 262 KILHV---------DGDMYCFDLLGSAFLWHQVRCMMANLFIVGQGLEPLTLINNLLDVE 312
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRD------LHEDWSLLSIKAT 287
K P+KPVY M PL LY +FD++ W ++ + ++ D+ L + +T
Sbjct: 313 KNPQKPVYDMASDIPLILYDCKFDDMEWQLPDLSAEKAFKTTRSVDGIYLDYQLKAAVST 372
Query: 288 MLGEMIKDTVRESKCTM 304
+ + + K T+
Sbjct: 373 IFKNTLPRADKNEKITI 389
>gi|341879449|gb|EGT35384.1| hypothetical protein CAEBREN_20868 [Caenorhabditis brenneri]
Length = 413
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 179/317 (56%), Gaps = 30/317 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IA + Y G+ + G Q + NT+ HL+ AL KT +IE E F+ CGRTD GVS
Sbjct: 42 RKIAFQFYYLGWEHDGLVQQLDTANTVEKHLMDALLKTKMIESWENCEFSRCGRTDKGVS 101
Query: 62 AFCQVVTLKIRSKL----------TSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAW 106
AF Q + +RS ++P + +S ELPY+KMLN LP+ I+V AW
Sbjct: 102 AFKQTAAVVVRSTCPQDPDVFWDESTPEDVKNNYKSKPEELPYVKMLNGLLPKTIRVFAW 161
Query: 107 SPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
+PV +++ARFDC R YKY F +A LD++ M +AA L+G HD+ N C+M+ +N
Sbjct: 162 APVKREFNARFDCNRRTYKYSFAKADLDLEKMREAASLLIGEHDYINFCQMD-----LNE 216
Query: 167 RRLVTHAGVTSAWQ-NVQFNDSH-----HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+RL T V ++ V+ +H +++ E + GFLWH IR I++VL +G+GN
Sbjct: 217 KRL-TQTTVRKIYEVKVEQVSTHPGNDIYSMVELTVSGSGFLWHMIRYIVTVLQEIGRGN 275
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVSHVLRDLHED 278
E P ++ +L+D +KYP +P Y + PL L+ + +++ W YD ++ + L +
Sbjct: 276 EHPTLVSELLDTQKYPGRPHYTLSSDTPLCLFDCGYKEEDVAWIYDS-DIKKTIVGLQKT 334
Query: 279 WSLLSIKATMLGEMIKD 295
W+ ++ M+ M+++
Sbjct: 335 WAAYQARSRMMENMLEE 351
>gi|301122837|ref|XP_002909145.1| tRNA pseudouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262099907|gb|EEY57959.1| tRNA pseudouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 510
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 128/365 (35%), Positives = 187/365 (51%), Gaps = 38/365 (10%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR +A+K LY G Y GF Q T+ +LL+AL ++ LIE+ + + ++ CGRTD GV
Sbjct: 72 MRAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKLIENIDDAGYSRCGRTDRGV 131
Query: 61 SAFCQVVTLKIRSKLTSP------------------------GEESDDNELPYLKMLNNN 96
SAF QVV L++RS L + GEE E+ Y +N
Sbjct: 132 SAFGQVVALRVRSNLPATAELLSAASIDDVRPGEKFQVRLATGEEKTLTEVDYASHINRA 191
Query: 97 LPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 156
LP DI+V A + ++SARFDC R Y+Y+F + LDI+ M AAQYLVG HDFRN C+
Sbjct: 192 LPADIRVYAVASCRPEFSARFDCKARMYRYFFVRRDLDIEKMRTAAQYLVGKHDFRNFCR 251
Query: 157 MNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLV 216
++ N V R + + V Q +D + + + FLWHQ+RC++ VLFL+
Sbjct: 252 ID-PNCHVFERNVRSFEIVECPGQRA--DDPSQQMYRCEVFGRAFLWHQVRCMVEVLFLI 308
Query: 217 GQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN--------LTWHYDEIEV 268
G G E+P II +L+DI + PRKP Y M PL L+ F + + Y + +
Sbjct: 309 GSGREEPSIIPKLLDIAQTPRKPQYDMASDLPLVLHDCYFADPDDAEGSGPRFAYTPLAL 368
Query: 269 SHVLRDLHEDWSLLSIKATMLG---EMIKDTVRESKCTMGDLDINHLIEGEFSRPGRILS 325
V L E W S++A ML + ++ E+ + DLD + R ++L+
Sbjct: 369 LQVHAQLTEMWEQRSVQAAMLRSHLDALEAFQVEANLVVKDLDHYAPKLEQLMRERKLLT 428
Query: 326 ETGEV 330
+ G V
Sbjct: 429 DEGGV 433
>gi|358338575|dbj|GAA57020.1| tRNA pseudouridine synthase 3, partial [Clonorchis sinensis]
Length = 368
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 167/310 (53%), Gaps = 29/310 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A + Y G+NY G IQ T+ L+ A +K LIED+ F CGRTD GVS
Sbjct: 4 RRVAFQFAYLGWNYSGLAIQNFG-VTVMQKLMDAFEKARLIEDRISCDFTVCGRTDKGVS 62
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN-------------ELPYLKMLNNNLPRDIKVVAWSP 108
A QVV+L +RS L S DD+ EL Y+ +LN LP DI+++AWSP
Sbjct: 63 ALGQVVSLVVRSALVSGLGIVDDSGTAINERPSIPDVELDYVFLLNKLLPPDIRILAWSP 122
Query: 109 VPEKYSAR-----------FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKM 157
V +SAR F C R+Y Y+ P +GLDI M +AA+ L GTHDFRN C +
Sbjct: 123 VGADFSARYSVFFFYNCLRFTCCQRSYTYFIPCSGLDITMMAEAAKRLEGTHDFRNFCSI 182
Query: 158 NVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
N+ + + F R + V +V + + +CE +I GFL+HQ+RCI+++L +G
Sbjct: 183 NLEHELPVFVRRIDSVLVRLEDTSVMCDPT--TMCEISITGSGFLYHQVRCIVALLVTIG 240
Query: 218 QGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVSHVLRDL 275
+G E P +I L+DIEK P KP Y M PL L E+ +L+W E ++R
Sbjct: 241 RGYESPSLIDDLLDIEKTPAKPQYQMAADYPLILMGAEYPPGSLSWETSEAARFELVRHF 300
Query: 276 HEDWSLLSIK 285
+ WS +I+
Sbjct: 301 QKLWSEHAIR 310
>gi|68490066|ref|XP_711154.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|68490103|ref|XP_711136.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432414|gb|EAK91897.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432433|gb|EAK91915.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
Length = 489
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 175/307 (57%), Gaps = 21/307 (6%)
Query: 1 MRPIALKILYQGFNYHGF--QIQTSSDNTIAHHLLKALQKTCLIEDK-EKSSFACCGRTD 57
MR +A K Y G+NY+G Q++ + T+ LKAL K LI++ E+ F+ CGRTD
Sbjct: 129 MRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTD 188
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV+++ +RS +T + E DD E+ Y+ +LN NLP DIKV + P P+
Sbjct: 189 KGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSICLRPPPD- 247
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF CL R+Y+Y F + LDI+ M++ A+ G HDFRN CK++ + NF R +
Sbjct: 248 FDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVREIYQ 307
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + H + F+++ FLWHQ+RC++++LF +GQ E P II L+D
Sbjct: 308 SQIIHL---------HQDYYCFDLKGSAFLWHQVRCMVAILFTIGQSLESPSIITDLMDT 358
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY--DEIEVSHVLRDLHEDWSLLSIKATMLG 290
K+P KP Y M PL LY EF ++ W DE + V++ L +K T +
Sbjct: 359 NKFPTKPQYEMAHDIPLVLYDCEFPSMEWKSTDDEYRLHRVIQGFTRMQYDLQLK-TQMS 417
Query: 291 EMIKDTV 297
++++DT+
Sbjct: 418 QIMEDTL 424
>gi|452825099|gb|EME32098.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 433
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 173/311 (55%), Gaps = 22/311 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL+I Y G+ + GF Q SDNT+ HL +AL KT LIE++E S ++ RTD GVS
Sbjct: 67 RKIALRICYLGWRFDGFASQPHSDNTVEEHLFRALLKTKLIENREGSCYSRAARTDKGVS 126
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A VV+L +RS + P + + EL Y ++LN LP I + W+ V + ARF +
Sbjct: 127 AIENVVSLTVRSHIIPPS--NGEVELDYPRILNGVLPSGIWITGWTSVDPDFHARFSASY 184
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT---------- 171
R Y Y+F L++ AM +AAQ+ VG HDFRN CK +V V +FRR++
Sbjct: 185 RVYHYYFRPEHLNLSAMQRAAQFFVGEHDFRNFCKADVTQ-VQSFRRVIYSCDIKIVSMT 243
Query: 172 -------HAGVTSAWQNVQFNDSHHNIC--EFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
H SA ++Q + + +IC + ++ Q FLWHQIRC+ S+LF+VG+G EK
Sbjct: 244 HKSRFEWHLPPESATCSLQSSKNTSSICLAKLVVKGQAFLWHQIRCMASILFMVGEGLEK 303
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLL 282
+I++ ++ E + KP+Y M PL L F L++ + V + L E + L
Sbjct: 304 EDIVKDMLQHECFGAKPLYRMASEIPLVLSQIGFGGLSFQISSKAYTDVEKFLQEACTSL 363
Query: 283 SIKATMLGEMI 293
KA +L +++
Sbjct: 364 LCKAAILKDLL 374
>gi|325186551|emb|CCA21092.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14]
Length = 493
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 166/313 (53%), Gaps = 28/313 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A+K LY G Y GF Q + TI +L +Q+T LI + ++ CGRTD GVS
Sbjct: 78 RMVAMKFLYSGERYCGFARQDHIEETIEKYLFDTMQRTKLITSIDDCCYSRCGRTDKGVS 137
Query: 62 AFCQVVTLKIRSKL------------------------TSPGEESDDNELPYLKMLNNNL 97
AF QV+ +K+RS + T G E+ Y LN L
Sbjct: 138 AFGQVIGIKVRSNVPIDAELLDVDSLDQVASGGRVRVKTQDGRIRKITEVDYAASLNRTL 197
Query: 98 PRDIKVVAWSPVPEKYSARFDC-LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 156
P DI+V + P +SARF+C R+Y+Y+F + LDI+ M AA G HDFRN C+
Sbjct: 198 PSDIRVYSVVNAPNNFSARFNCDRGRSYRYFFMKKDLDIEKMRLAAIGFEGLHDFRNFCR 257
Query: 157 MNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLV 216
++ F R V + S+ + + + + F I FLWHQ+RC++S+LFL+
Sbjct: 258 IDTN--CQTFDRNVRSFKIKSS-DEIGDKNPYRQMYYFEIHGNAFLWHQVRCMVSILFLI 314
Query: 217 GQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLH 276
GQG E+P I+++++DIEKYPRKP Y + PL L+ FD++ + Y + +SH+ R+
Sbjct: 315 GQGREEPSIVKKMLDIEKYPRKPQYAIAPDHPLVLHDCRFDSINFDYSPLALSHLYREFS 374
Query: 277 EDWSLLSIKATML 289
+ L IK+ L
Sbjct: 375 ALYELHKIKSARL 387
>gi|294656526|ref|XP_458796.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
gi|199431537|emb|CAG86940.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
Length = 444
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/269 (41%), Positives = 157/269 (58%), Gaps = 19/269 (7%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIE--DKEKSSFACCGRTD 57
R IAL+ Y G++Y+G FQ + + T+ +LKAL K+ LI D +F+ CGRTD
Sbjct: 84 RFIALRFAYVGWDYNGLNFQYEPTPLPTVEEEILKALAKSKLITQVDPACCNFSRCGRTD 143
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKVVA--WSPVPEK 112
GVSA QV++L +RS L + S DD ELPYL +LN+ LP DI++ A P P K
Sbjct: 144 KGVSAMNQVISLDVRSNLIPEDQLSSSNDDKELPYLAILNSLLPTDIRITAVCLRP-PPK 202
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C +R+Y+Y F + LD+D M + A+ G DFRN CK++ + N++R V
Sbjct: 203 FDARFSCSYRHYRYIFRKYDLDLDLMQEGAKRYEGVRDFRNFCKIDGSKQITNYKREVLS 262
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + + D + F+++ FLWHQ+RC+M+VLF VGQ E P II LVD+
Sbjct: 263 ANI------IHLRDDFY---IFDLKGSAFLWHQVRCMMAVLFAVGQKLEAPSIIDDLVDV 313
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
EK+P KP + M PL LY F + W
Sbjct: 314 EKFPGKPSFEMANDVPLVLYDCVFPEMEW 342
>gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis]
Length = 444
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 158/268 (58%), Gaps = 17/268 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIED--KEKSSFACCGRTD 57
R +A K Y G+NY+G IQ + T+ +L+ + K L+ ++ F+ CGRTD
Sbjct: 96 RFVAFKFAYLGWNYNGLAIQKDATPLPTVEGTILETMNKCKLVPSMVPQEYKFSRCGRTD 155
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-Y 113
GVSA QV++L++RS LT+ + DD E+ Y+ +LN LP DI+V A P K +
Sbjct: 156 RGVSAMNQVISLRVRSNLTAEEQLDPSYDDKEIQYVNILNQILPEDIRVSAVCLRPPKGF 215
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
ARF C R+YKY F GLD++ M AA++ G HDFRN CK++ + N++R + +
Sbjct: 216 DARFSCKSRHYKYLFSSEGLDLERMQLAAKHYEGEHDFRNFCKLDGSKQITNYKRTIKSS 275
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ +++ C F++ FLWHQ+RC+++ LFLVGQG E P +I++++DIE
Sbjct: 276 NIMHVSEDM--------YC-FDLVGSAFLWHQVRCMVANLFLVGQGLEDPNLIKEMLDIE 326
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
K PRKP+Y M PL LY EF + W
Sbjct: 327 KMPRKPIYEMASDIPLILYECEFSPMEW 354
>gi|281200681|gb|EFA74899.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500]
Length = 1052
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 164/290 (56%), Gaps = 31/290 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEK---SSFACCGRTDS 58
R IALK+ Y G++YHGF Q ++ TI HL++ALQKTCLI D + S +A GRTD
Sbjct: 767 RYIALKVAYLGWDYHGFAAQQITEETIEGHLIRALQKTCLINDIKNCNYSKYALSGRTDK 826
Query: 59 GVSAFCQVVTLKIRSKLTS-----PGEESDDN-----------------ELPYLKMLNNN 96
GVSAF QV++L +RS LT P DD E ++KMLN
Sbjct: 827 GVSAFGQVISLYVRSNLTEGNDLIPPTVIDDEAIAKKKANLLKNKKTHEEFQFVKMLNGV 886
Query: 97 LPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 156
LP I+V+ WSP+P ++ARF L+R YKY+F + LD++ M +A + +G HDF N CK
Sbjct: 887 LPPYIRVLGWSPIPFHFNARFSTLYRTYKYFFDPSNLDLNLMKEAGKSYIGEHDFSNFCK 946
Query: 157 MNVGNGVVNFRRLVTHAGVTSAWQNVQFND-SHHNICEFNIRSQGFLWHQIRCIMSVLFL 215
+++ V +F R++ + Q V+ D S + I FLWHQIRC+M++LFL
Sbjct: 947 IDL-ESVKSFTRVILSFDI----QPVESGDFSTSGMYVATICGYAFLWHQIRCMMAMLFL 1001
Query: 216 VGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDE 265
+GQ II L+D+ K KP Y M PL L+ +++L + YD+
Sbjct: 1002 IGQKKFPTTIIADLLDLSKGIVKPPYEMASEVPLVLFDCGYEDLNFIYDK 1051
>gi|157872401|ref|XP_001684749.1| putative pseudouridine synthase A-like protein [Leishmania major
strain Friedlin]
gi|68127819|emb|CAJ06260.1| putative pseudouridine synthase A-like protein [Leishmania major
strain Friedlin]
Length = 498
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 162/294 (55%), Gaps = 16/294 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL++ Y G + G Q +DNT+ + AL++ LI + +F CGRTD GVS
Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
A +L R+ T E +LP Y MLNN LP I++V + V + + ARF
Sbjct: 120 ALGNAFSLTARASCTGDAEP----QLPPLDYCSMLNNVLPSTIRIVGCALVDDAFDARFS 175
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
C+ R Y+Y+F GL++ AM +AA + +GTH+FRN CKM+V N V NF R V G+ +
Sbjct: 176 CVHRTYRYYFFHRGLNLAAMQEAAAFFLGTHNFRNFCKMDVVN-VSNFVRTVFSVGLHPS 234
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+ I IR+ FL+HQIRCIM VLFLVG+G E P ++Q L+++ RK
Sbjct: 235 EALPEL------ISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTLLELGD--RK 286
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P YP+ G PL L+ FDN+ W + ++L + + L I+AT M
Sbjct: 287 PTYPLADGTPLILWDCGFDNVQWQMSHCAFHAMEQELQDIGTALLIRATSATAM 340
>gi|407416983|gb|EKF37879.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 459
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 162/291 (55%), Gaps = 10/291 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A+++ Y G Y G Q + NT+ +++ AL+ LI S A CGRTD GVS
Sbjct: 70 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPSDLARCGRTDKGVS 129
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A +L +R+ + P + L Y MLN+ LP I++V W+ V + + ARF C+
Sbjct: 130 ALGNAFSLTVRAS-SWPTDSPQKPPLDYCAMLNSALPVTIRIVGWAYVDDSFDARFSCVG 188
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+F GL++ AM AA L G H+FRN CK +V N V N+ R V G+ ++
Sbjct: 189 RTYRYYFCHRGLNVKAMGDAAARLKGVHNFRNFCKTDVVN-VSNYERDVRSVGIFASETL 247
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ + F I + FL+HQIRC M VLFLVG+G E PE++ QL +E+ RKPVY
Sbjct: 248 PEL------VSYFEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQL--LERGDRKPVY 299
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P+ G PL L+ F NL W+ + + V +L + + L ++A++ M
Sbjct: 300 PLADGTPLVLWDCHFKNLQWNISKRAFTAVEHELQDIATALFLRASVANSM 350
>gi|380477720|emb|CCF43995.1| tRNA pseudouridine synthase A [Colletotrichum higginsianum]
Length = 482
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 189/390 (48%), Gaps = 91/390 (23%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK Y G Y GF+ +S+ TI L AL K CLI ED E +F CC
Sbjct: 9 RFIALKFAYLGKRYGGFEYASSASLPTIEGELWNALTKACLIFPEDPEVVNFDCCEYSKC 68
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSP-------------------------GEESD----- 83
GRTD GVSAF QV+ L++RS P GEE +
Sbjct: 69 GRTDRGVSAFGQVIALRVRSSKPLPKKPEEQAIPETEGDTAMEGTVEKAEGEEDNKKPEK 128
Query: 84 -----DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQAG----- 132
++E+PY+K+LN LP DI+V+AW P P +SARF C R Y+Y+F Q
Sbjct: 129 EWDDIEDEIPYVKVLNRLLPDDIRVIAWCPAPPPGFSARFSCEERQYRYFFTQPAFTPTA 188
Query: 133 ----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
LDI+AM++AA+ VG HDFRN CK++ + +F R + AGV
Sbjct: 189 VTATDGAPPDGLREGYLDIEAMNEAARRFVGDHDFRNFCKVDGSKQITSFERRMYEAGVE 248
Query: 177 SAWQNV------------QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
Q+V ND + FNIR FLWHQIR ++++LFLVGQ E P+
Sbjct: 249 EX-QDVGSVLPYLGRDAADGNDKLPRVYSFNIRGTAFLWHQIRHMVTILFLVGQRLEGPD 307
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF-------------DNLTWHYDEIEVSHV 271
+I +L+D+EK PRKP Y + PL L++ F + L W Y E +V
Sbjct: 308 VITRLLDVEKTPRKPNYDLAHETPLVLWNCVFPGDDDSRIPTAPENALRWVYGEADVVES 367
Query: 272 LRDLHEDWSLLSIKATMLGEMIKDTVRESK 301
L + + + + A L ++I V+ ++
Sbjct: 368 LWAHYREKKMDEVLANRLLDLISGQVQSTE 397
>gi|123976924|ref|XP_001330657.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis
G3]
gi|121897278|gb|EAY02404.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis
G3]
Length = 353
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 171/300 (57%), Gaps = 21/300 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL+I Y G+N GF +Q ++ T+ +H+ +AL++ LI ++ + +++ CGRTD+GVS
Sbjct: 20 RQIALRIAYIGWNLKGFVLQNDTNETVEYHIFEALKRAKLIRNENECNYSLCGRTDAGVS 79
Query: 62 AFCQVVTLKIRS-------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
V+++++RS + G + E+ Y ++LN LP I+V + V ++
Sbjct: 80 GVGNVISVRVRSVCPTGLGSIPREGAKVQKEEMNYAQILNGILPPSIRVTGVAYVKPDFN 139
Query: 115 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
ARFDC R Y+Y+F + +ID M +AA++L+G HD+R CK + + R++
Sbjct: 140 ARFDCATRGYRYFFHKFDKNIDLMKEAAEHLLGEHDYRAFCKFSPDSTKHCVRKIY---- 195
Query: 175 VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+F D+ + F I GF+WHQIRCI S+LF VG G EKP I ++L++ K
Sbjct: 196 ------KCEFGDAGGGVWYFEIVGSGFIWHQIRCIASILFAVGNGFEKPSITKELLNTAK 249
Query: 235 YPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
YP +P YP+ EPL ++ ++N+ W DE V + + +++L I A M +++
Sbjct: 250 YPGRPNYPIADPEPLVFWNAGYENIDWKIDEA----VEKKMKTNFALQLIDAEMRAAVLR 305
>gi|401425633|ref|XP_003877301.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493546|emb|CBZ28834.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 499
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 163/294 (55%), Gaps = 16/294 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL++ Y G + G Q +DNT+ + AL++ LI + +F CGRTD GVS
Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
A ++L R+ T+ E +LP Y MLNN LP I++V + V + + ARF
Sbjct: 120 ALGNALSLTARASCTADAEP----QLPPLDYCSMLNNVLPSTIRIVGCALVDDAFDARFS 175
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
C+ R Y+Y+F GL++ AM +AA + +GTH+FRN CKM+V N V NF R V G+ +
Sbjct: 176 CVHRTYRYYFFHRGLNLAAMQEAAAFFLGTHNFRNFCKMDVVN-VSNFVRTVFSVGLYPS 234
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+ + I IR+ FL+HQIRC M VLFLVG+G E P ++Q L+++ K
Sbjct: 235 EELPEL------ISYLEIRANSFLYHQIRCTMEVLFLVGRGLEAPSVVQTLLELGDC--K 286
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P YP+ G PL L+ FDN+ W + ++L + + L I+AT M
Sbjct: 287 PTYPLADGTPLVLWDCGFDNVQWEMSHCAFHAMEQELQDISTALLIRATSAAAM 340
>gi|302808177|ref|XP_002985783.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii]
gi|300146290|gb|EFJ12960.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii]
Length = 372
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 159/289 (55%), Gaps = 38/289 (13%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDK-EKSSFACCGRTDSGV 60
R +ALKI+Y G YHGF Q + NT+ + ALQ+T L+ ++++ CGRTD GV
Sbjct: 67 RFVALKIMYIGSCYHGFASQGCAFNTVESEIFAALQRTNLVVGSIADANYSRCGRTDRGV 126
Query: 61 SAFCQVVTLKIRSKLTSPGE---------------------------ESDDNELPYLKML 93
SA QV+ L +RSK + + E+DD+E+ Y+ L
Sbjct: 127 SATAQVIALYLRSKKKALDDTEESGYGSKDRVIVARSSREEEEMFAAETDDDEIDYVSSL 186
Query: 94 NNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRN 153
N LP DI+V+ W PVP + ARF CL+R YKY+F GL+IDAM +A+Q L+G HDFRN
Sbjct: 187 NRALPADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQASQRLLGEHDFRN 246
Query: 154 LCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVL 213
CKM+ N + N+ R + + + + ++R FLWHQ+RC+ +VL
Sbjct: 247 FCKMDADN-IHNYTRQILAFDILPIEECLWV---------MHVRGNAFLWHQVRCMAAVL 296
Query: 214 FLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
F++G+G+E II L+D++K RKP Y M PL L F L ++
Sbjct: 297 FMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVLQSCAFQGLRFY 345
>gi|50556320|ref|XP_505568.1| YALI0F18216p [Yarrowia lipolytica]
gi|49651438|emb|CAG78377.1| YALI0F18216p [Yarrowia lipolytica CLIB122]
Length = 443
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/266 (41%), Positives = 164/266 (61%), Gaps = 20/266 (7%)
Query: 1 MRPIALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLIEDKEKS---SFACCGR 55
+R IA++ Y G+NY G +Q + TI +L A+Q+ LI + F+ CGR
Sbjct: 83 VRKIAIRFSYLGWNYGGLAVQHEDTPLPTIEGTILSAMQRCRLIPESASLFDLDFSRCGR 142
Query: 56 TDSGVSAFCQVVTLKIRSKLTSPGEE----SDDNELPYLKMLNNNLPRDIKVVAWS-PVP 110
TD GVSAF QV+ LK+RSKL SP E+ +D+ EL Y+ +LN LP DI++ + + +P
Sbjct: 143 TDRGVSAFSQVIALKVRSKL-SPEEQQDAANDNKELNYIHILNQLLPPDIRIYSVALRLP 201
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
E + +RF C +R+Y+Y+F + LDID M +AA+ +G HD+RN CK++ + + R++
Sbjct: 202 EGFDSRFSCEYRHYRYFFHKGDLDIDLMRQAAKLYLGEHDYRNFCKVDGSKQLAHHNRVM 261
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
A + Q +D +I FN++ + FLWHQ+RC+M++LFLVGQ EKP +I L+
Sbjct: 262 LEAEIE------QLSD---DIYYFNLKGRAFLWHQVRCMMAILFLVGQKLEKPSVITDLL 312
Query: 231 DIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ EKYP +PVY M PL LY F
Sbjct: 313 NPEKYPGRPVYDMAHDVPLVLYDCTF 338
>gi|241955317|ref|XP_002420379.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36]
gi|223643721|emb|CAX41457.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36]
Length = 444
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 21/307 (6%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDK-EKSSFACCGRTD 57
MR +A K Y G+NY+G +Q T+ LKAL K LI++ E+ F+ CGRTD
Sbjct: 86 MRFVAFKFAYLGWNYNGLALQGEPTPLPTVEEMFLKALAKVKLIKEPIEEVKFSRCGRTD 145
Query: 58 SGVSAFCQVVTLKIRSKLT---SPGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV+++ +RS L+ E DD E+ Y+ +LN NLP DIKV + P PE
Sbjct: 146 KGVSAMNQVISIDVRSNLSLENQANPEFDDQEIDYISVLNANLPSDIKVHSICLRPPPE- 204
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF CL +Y+Y F + L+ID M++ A G HDFRN CK++ + NF R +
Sbjct: 205 FDARFSCLSCHYRYIFRKQDLNIDLMNQGANLYQGIHDFRNFCKLDGSKQITNFVREIYQ 264
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + H + F+++ FLWHQ+RC++++LF +GQ E P II L+D+
Sbjct: 265 AQILHL---------HQDYYCFDLKGSAFLWHQVRCMVAILFSIGQELESPSIITDLMDM 315
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY--DEIEVSHVLRDLHEDWSLLSIKATMLG 290
KYP KP Y M PL LY EF + W DE + V++ L +K T +
Sbjct: 316 TKYPTKPQYEMAHDIPLVLYDCEFPPMEWKSTNDEYRLHRVIQSFTRMQYDLQLK-TQMS 374
Query: 291 EMIKDTV 297
+++++T+
Sbjct: 375 QIMENTL 381
>gi|351698951|gb|EHB01870.1| tRNA pseudouridine synthase 3 [Heterocephalus glaber]
Length = 292
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 134/199 (67%), Gaps = 7/199 (3%)
Query: 80 EESDD-NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAM 138
E SDD E+ Y +LN LP DI+V+AW+PV +SARF CL R Y+Y+FP A LDI M
Sbjct: 35 EVSDDAKEIRYTHILNRVLPPDIRVLAWAPVESSFSARFSCLERTYRYFFPCADLDIVRM 94
Query: 139 HKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFN--DSHHNICEFNI 196
+ AAQ VGTHDFRNLCKM+V NGV+NF+R + A V Q++ +C+F +
Sbjct: 95 NYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLGEERWQEPFQLCQFEV 154
Query: 197 RSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
Q FL+HQ+RC+M++LFL+GQG EKPE+I +L++IEK P+KP Y M PL LY +F
Sbjct: 155 TGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLILYDCKF 214
Query: 257 DNLTWHYD----EIEVSHV 271
+N+ W YD E V+H+
Sbjct: 215 ENIKWIYDQEVQEFNVTHL 233
>gi|10086461|gb|AAG12521.1|AC015446_2 Putative pseudouridine synthase [Arabidopsis thaliana]
Length = 442
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 162/295 (54%), Gaps = 40/295 (13%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALKI+Y G ++GF + + +I + KAL++T L+ DK+ S ++ CGRTD GV
Sbjct: 90 RYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGV 149
Query: 61 SAFCQ-------------------------VVTLKIRSKLTSP---------GEESDDNE 86
S+ Q V+ L +RS+L SP G + E
Sbjct: 150 SSTGQFKNQFLIVLMFFQNPVMGAFPNVYKVIALFLRSRLKSPPGDSKAQVNGRTGERPE 209
Query: 87 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLV 146
Y+++LN LP DI+V+ WSP P + ARF C R YKY+F + L++ AM A + +
Sbjct: 210 YDYVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKFI 269
Query: 147 GTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQI 206
G HDFRN CKM+V N V + R VT V S QN D +C F +R FLWHQI
Sbjct: 270 GEHDFRNFCKMDVAN-VHCYTRRVTFFEV-SPCQNSHEGD---QLCTFTMRGSAFLWHQI 324
Query: 207 RCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
RC+++VLF++GQG E ++I L+D +K PRKP Y + PL L EF+N+ +
Sbjct: 325 RCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVDF 379
>gi|401840675|gb|EJT43400.1| DEG1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 441
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 169/281 (60%), Gaps = 19/281 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G IQ + T+ +L+A+ K L+ ++ F+ CGRTD
Sbjct: 91 RLIALRFAYLGWNYNGLAIQKEYTPLPTVEGIILEAMNKCKLVPSLVLQEYKFSRCGRTD 150
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++LK+RS LT+ + +D E+ Y+++LN LP DI++ V P P+
Sbjct: 151 KGVSAMNQVISLKVRSNLTNEEQLDSANDCREISYVRVLNQLLPDDIRISAVCLRPPPD- 209
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+ID M KAA Y +G +DFRN CK++ + NF+R +
Sbjct: 210 FDARFSCVHRHYKYVFNGKNLNIDKMSKAASYFLGENDFRNFCKLDGSKQITNFKRTMLS 269
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + + +D+ + C F++ FLWHQ+RC+M++LFL GQ E+PE++ +L+DI
Sbjct: 270 SKI------LPLSDTFY--C-FDLIGSAFLWHQVRCMMAILFLAGQELEEPEMVLRLLDI 320
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLR 273
EK P++P+Y M PL LY EF L W ++ +R
Sbjct: 321 EKTPQRPIYDMADDIPLLLYDCEFPQLEWQETAVDDCKSIR 361
>gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 281
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/273 (41%), Positives = 156/273 (57%), Gaps = 23/273 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQ-----TSSDNTIAHHLLKALQKTCLIEDKEKSS---FACC 53
R IAL + Y G++YHGF Q + TI L AL++T LI D + + C
Sbjct: 16 RHIALHVAYAGWDYHGFASQGNDAAEARSPTIEGALFAALKRTRLIADDATWTDVDYTRC 75
Query: 54 GRTDSGVSAFCQVVTLKIRSKLT------SPGEESDDNELPYLKMLNNNLPRDIKVVAWS 107
GRTD+GVSA Q+V+L+ RS+ T P D +EL Y +LN LP DI+V W
Sbjct: 76 GRTDAGVSAMGQLVSLRARSRGTRYTPPSPPPPAKDADELDYPSILNRALPDDIRVTGWC 135
Query: 108 PVPEKYSARFDCLFRNYKYWFP--QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
V E +SARFDC +R+YKY+F GLD++ M AA+ L G HDFRN CKM+V N +
Sbjct: 136 YVDEAFSARFDCEWRHYKYFFTLHDGGLDLEKMRDAARRLEGEHDFRNFCKMDVKNVHNH 195
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
RR++ + + + +C +++ FLWHQ+RC+ +VLFLVG G E P +
Sbjct: 196 ARRILES-------ASSSASGAPPRLCYISVKGTAFLWHQVRCVAAVLFLVGLGKEPPSV 248
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
I L+D+EK RKP Y M EPL L+ + FD
Sbjct: 249 IDDLLDLEKTTRKPQYEMAPEEPLLLWASGFDE 281
>gi|254583638|ref|XP_002497387.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
gi|238940280|emb|CAR28454.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
Length = 431
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 172/306 (56%), Gaps = 23/306 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IALK Y G+NY+G +Q + T+ ++ AL K L+ + F+ CGRTD
Sbjct: 80 RFIALKFSYLGWNYNGLAVQKDVTPLPTVEGVIIDALMKCRLVASSNVQDFRFSRCGRTD 139
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKVVAWS-PVPEKY 113
GVSA QV++L++RS L+ ++ +D EL Y ++LN+ LP DIK+ A PE +
Sbjct: 140 KGVSAMNQVISLEVRSNLSDEEQKDPSNDTRELQYAQILNHLLPEDIKISAMCLRPPEGF 199
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
AR+ C +R+YKY F GL +D M KAA G HDFRN CK++ + N+ R +
Sbjct: 200 DARYSCEYRHYKYLFSGKGLMLDRMQKAAALYHGEHDFRNFCKLDGSKQITNYTRNI--- 256
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ S Q++ N+ F++ FLWHQ+RC+M++LFLVGQG E+P +I L+D++
Sbjct: 257 -LGSEIQHIS-----DNMYCFDLVGSAFLWHQVRCMMAILFLVGQGLEEPSVITNLLDVD 310
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSLLSIKAT 287
K P+KP+Y M PL LY +F + W Y I+ S V+ L+ + + A
Sbjct: 311 KTPQKPIYEMASDLPLILYDCKFPEMEWIQPTSADYKAIKYSKVIESLNLHYQFKATVAN 370
Query: 288 MLGEMI 293
M E +
Sbjct: 371 MFAECL 376
>gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata]
Length = 438
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 180/314 (57%), Gaps = 29/314 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIED--KEKSSFACCGRTD 57
R IAL+ Y G+NY+G IQ TI +++AL K L+ ++ F+ CGRTD
Sbjct: 86 RFIALRFAYLGWNYNGLAIQKDPTPLPTIEGTIIEALNKCKLVPSITPQEFEFSRCGRTD 145
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT ++ +D E+ Y+ +LN LP DI++ V P P
Sbjct: 146 KGVSAMNQVISLRVRSNLTDEEQKDPRNDHKEIQYVAILNQLLPDDIRISAVCLRP-PNS 204
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C +R+YKY F + GLD+D M KAA+ G HDFRN CK++ + N+ R +
Sbjct: 205 FDARFSCEYRHYKYLFHKDGLDLDRMQKAAKLYEGEHDFRNFCKLDGSKQITNYNRTMIS 264
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + +ND + C F++ FLWHQ+RC+ ++LFLVGQG E+P +I++++D+
Sbjct: 265 ANIKHV-----YNDFY---C-FDLIGSAFLWHQVRCMTAILFLVGQGLEEPTLIEKMLDV 315
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH------YDEIEVSHVLRDLHEDWSLLSIKA 286
P+KP+Y M PL LY +F + W Y ++ + L D+ L KA
Sbjct: 316 TSMPQKPMYEMASDIPLLLYDCKFPAMEWQEANLNDYKSVKYGKAVSALALDYHL---KA 372
Query: 287 TMLGEMIKDTVRES 300
T++ E+ K+T+ S
Sbjct: 373 TVV-EIFKNTLPTS 385
>gi|224066589|ref|XP_002302151.1| predicted protein [Populus trichocarpa]
gi|222843877|gb|EEE81424.1| predicted protein [Populus trichocarpa]
Length = 465
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 36/324 (11%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALK++Y G ++GF ++ D T+ + KAL+ T LI D+++ ++ CGRTD GV
Sbjct: 93 RYVALKVMYFGQRFYGFSLEAQMDPTVESEIFKALETTRLLIGDRKEIQYSRCGRTDKGV 152
Query: 61 SAFCQVVTLKIRSKL------------TSPGEE-SDDNELPYLKMLNNNLPRDIKVVAWS 107
SA QV+ L +RSKL T P E+ E+ Y+++LN LP+DI++V W
Sbjct: 153 SAVGQVIALYLRSKLKDIDAHNKHSGETVPEEQDGQPGEIDYVRVLNGVLPKDIRIVGWC 212
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
PVP +SARF CL R YKY+F L++ M A + L+G HDFRN CKM+ V N+R
Sbjct: 213 PVPSDFSARFSCLSREYKYFFWNDNLNLLVMETAGKKLIGEHDFRNFCKMDAVK-VHNYR 271
Query: 168 RLVT-----------HAGVTSA-WQ----NVQFNDSHHNICEFNIRSQGFLWHQIRCIMS 211
R V +G+ S W +++ H + I+ FLWHQ+RC+++
Sbjct: 272 RNVMSFEISPCDMSHSSGMGSVKWMITKPSIRTRFEGHQLYAIKIKGSAFLWHQVRCMVA 331
Query: 212 VLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW--HYDEIEVS 269
VLF++GQG E PE+I L+D RKP Y M PL L EF+ L + D +
Sbjct: 332 VLFMIGQGLESPEVIDALLDTRTL-RKPQYLMAPEIPLVLLSCEFEGLKFSCSSDAGQAL 390
Query: 270 HVLRDLHEDWSLLSIKATMLGEMI 293
HV L + L ++A + E +
Sbjct: 391 HV--HLENECRLYHLQAAIFQEAL 412
>gi|365760937|gb|EHN02619.1| Deg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 169/281 (60%), Gaps = 19/281 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G IQ + T+ +L+A+ K L+ ++ F+ CGRTD
Sbjct: 91 RLIALRFAYLGWNYNGLAIQKEYTPLPTVEGIILEAMNKCKLVPSLVLQEYKFSRCGRTD 150
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++LK+RS LT+ + +D E+ Y+++LN LP DI++ V P P+
Sbjct: 151 KGVSAMNQVISLKVRSNLTNEEQLDPANDCREISYVRVLNQLLPDDIRISAVCLRPPPD- 209
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+ID M KAA Y +G +DFRN CK++ + NF+R +
Sbjct: 210 FDARFSCVHRHYKYVFNGKNLNIDKMSKAASYFLGENDFRNFCKLDGSKQITNFKRTMLS 269
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + + +D+ + C F++ FLWHQ+RC+M++LFL GQ E+PE++ +L+DI
Sbjct: 270 SKI------LPLSDTFY--C-FDLIGSAFLWHQVRCMMAILFLAGQELEEPEMVLRLLDI 320
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLR 273
EK P++P+Y M PL LY EF L W ++ +R
Sbjct: 321 EKTPQRPIYDMADDIPLLLYDCEFPQLEWQETAVDDCKSIR 361
>gi|259146190|emb|CAY79449.1| Deg1p [Saccharomyces cerevisiae EC1118]
Length = 442
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 156/270 (57%), Gaps = 19/270 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQNYKFSRCGRTD 151
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V P P
Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 210
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 270
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 271 SKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 321
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
EK P++PVY M PL LY +F + W
Sbjct: 322 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 351
>gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera]
Length = 466
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 163/289 (56%), Gaps = 34/289 (11%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCL-IEDKEKSSFACCGRTDSGV 60
R +ALK++Y G ++GF + D T+ + KAL+KT L + DK++ ++ CGRTD GV
Sbjct: 101 RYVALKVMYFGPRFYGFASEAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKGV 160
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDN----------------------------ELPYLKM 92
S+ QV+ L +RS L G +++ E+ Y+++
Sbjct: 161 SSVGQVIALFLRSNLKEIGAREENSKEVVPEEQYEERREVKDEGGGDSLASEGEIDYMRV 220
Query: 93 LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFR 152
LN LP+DI+V+ W PVP + ARF CL R YKY+F + L+I AM A + VG HDFR
Sbjct: 221 LNRVLPKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRGNLNILAMESAGKKFVGEHDFR 280
Query: 153 NLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSV 212
N CKM+ N V N+RR + + A N +++ + + I+ FLWHQ+RC+++V
Sbjct: 281 NFCKMDAVN-VHNYRRHIISFEI--APTNNRYDGNQ--LWAIKIKGSAFLWHQVRCMVAV 335
Query: 213 LFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
LF++GQG E P+++ L+D E+ RKP Y M PL L EF+ L +
Sbjct: 336 LFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEFEGLKF 384
>gi|14318522|ref|NP_116655.1| pseudouridine synthase DEG1 [Saccharomyces cerevisiae S288c]
gi|399356|sp|P31115.1|PUS3_YEAST RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=Depressed growth-rate protein DEG1; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|836755|dbj|BAA09239.1| depressed growth-rate protein [Saccharomyces cerevisiae]
gi|51013845|gb|AAT93216.1| YFL001W [Saccharomyces cerevisiae]
gi|285811895|tpg|DAA12440.1| TPA: pseudouridine synthase DEG1 [Saccharomyces cerevisiae S288c]
Length = 442
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 156/270 (57%), Gaps = 19/270 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTD 151
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V P P
Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 210
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 270
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 271 SKILPL--------SETFYC-FDLVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 321
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
EK P++PVY M PL LY +F + W
Sbjct: 322 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 351
>gi|392299670|gb|EIW10763.1| Deg1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 442
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 158/275 (57%), Gaps = 19/275 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTD 151
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V P P
Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 210
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 270
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 271 SKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 321
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIE 267
EK P++PVY M PL LY +F + W ++
Sbjct: 322 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPSVD 356
>gi|323337774|gb|EGA79017.1| Deg1p [Saccharomyces cerevisiae Vin13]
gi|365765842|gb|EHN07347.1| Deg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 442
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 156/270 (57%), Gaps = 19/270 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQBYKFSRCGRTD 151
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V P P
Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 210
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 270
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 271 SKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 321
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
EK P++PVY M PL LY +F + W
Sbjct: 322 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 351
>gi|323452423|gb|EGB08297.1| hypothetical protein AURANDRAFT_11850, partial [Aureococcus
anophagefferens]
Length = 266
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 152/267 (56%), Gaps = 26/267 (9%)
Query: 2 RPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDS 58
R IAL I Y+G Y GF I + +T+ L AL+KTCL+E +E ++ CGRTD
Sbjct: 17 RCIALWISYEGGAYSGFAEQNIPGAGVDTVERQLFAALKKTCLVESRESCGYSRCGRTDK 76
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
GVSA QVV L++RS + GE D Y+ MLN LP D++ +AW PV ++SARF
Sbjct: 77 GVSALGQVVGLRVRSAARA-GEPLD-----YVNMLNRVLPDDVRALAWRPVVPEFSARFS 130
Query: 119 CLFRNYKYWFPQ------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
C R Y+Y+FP A D+ AM AA LVG HDFRN CKM+V + V NFRR+V
Sbjct: 131 CASRTYRYFFPATSPNTGAAYDVPAMAAAAARLVGDHDFRNFCKMDVLH-VKNFRRVVYA 189
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A V F I Q FLWH +R +++VLFLVG+G E P ++ L+D+
Sbjct: 190 ADVRKTGDGFFFE----------IHGQAFLWHMVRSLVAVLFLVGEGLEPPAVVDALLDV 239
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNL 259
+ PRKP Y + PL L+ FD L
Sbjct: 240 ARTPRKPQYLIADERPLVLHDCAFDTL 266
>gi|151940762|gb|EDN59149.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789]
Length = 442
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 156/270 (57%), Gaps = 19/270 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTD 151
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V P P
Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 210
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 270
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 271 SKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 321
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
EK P++PVY M PL LY +F + W
Sbjct: 322 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 351
>gi|190406572|gb|EDV09839.1| tRNA pseudouridine synthase 3 [Saccharomyces cerevisiae RM11-1a]
gi|256268860|gb|EEU04212.1| Deg1p [Saccharomyces cerevisiae JAY291]
gi|323309245|gb|EGA62466.1| Deg1p [Saccharomyces cerevisiae FostersO]
Length = 442
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 156/270 (57%), Gaps = 19/270 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTD 151
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V P P
Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 210
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 270
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 271 SKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 321
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
EK P++PVY M PL LY +F + W
Sbjct: 322 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 351
>gi|349577915|dbj|GAA23082.1| K7_Deg1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 442
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 159/270 (58%), Gaps = 19/270 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTD 151
Query: 58 SGVSAFCQVVTLKIRSKLTSP--GEESDDN-ELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT G+ ++D+ E+PY+ +LN LP DI++ V P P
Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQGDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 210
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 270
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 271 SKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 321
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
EK P++PVY M PL LY +F + W
Sbjct: 322 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 351
>gi|323305104|gb|EGA58854.1| Deg1p [Saccharomyces cerevisiae FostersB]
Length = 431
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 156/270 (57%), Gaps = 19/270 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q + T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 81 RFIALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTD 140
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V P P
Sbjct: 141 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 199
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 200 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 259
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 260 SKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 310
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
EK P++PVY M PL LY +F + W
Sbjct: 311 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 340
>gi|71665382|ref|XP_819661.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70884973|gb|EAN97810.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 429
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 161/291 (55%), Gaps = 10/291 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A+++ Y G Y G Q + NT+ +++ AL+ LI A CGRTD GVS
Sbjct: 40 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 99
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A V +L +R+ + P + L Y MLN+ LP I++V W+ V + + ARF C+
Sbjct: 100 ALGNVFSLTVRAS-SWPTDSPQKPALDYCAMLNSALPVTIRIVGWAYVDDTFDARFSCVG 158
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+F GL+++AM AA L G H+FRN CK +V N V N+ R V G+ ++
Sbjct: 159 RTYRYYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVN-VSNYERDVRSVGIFASEAF 217
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ + I + FL+HQIRC M VLFLVG+G E PE++ QL +E+ RKPVY
Sbjct: 218 PEL------VSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQL--LERGDRKPVY 269
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P+ G PL L+ F NL W+ + V +L + + L ++A++ M
Sbjct: 270 PLADGTPLVLWDCHFKNLQWNISKRAFMAVEHELQDIATALFLRASLANSM 320
>gi|407852041|gb|EKG05708.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 526
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 161/291 (55%), Gaps = 10/291 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A+++ Y G Y G Q + NT+ +++ AL+ LI A CGRTD GVS
Sbjct: 137 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 196
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A V +L +R+ + P + L Y MLN+ LP I++V W+ V + + ARF C+
Sbjct: 197 ALGNVFSLTVRAS-SWPTDSPQKPALDYCAMLNSALPVTIRIVGWAYVDDTFDARFSCVG 255
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+F GL+++AM AA L G H+FRN CK +V N V N+ R V G+ ++
Sbjct: 256 RTYRYYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVN-VSNYERDVRSVGIFASEAL 314
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ + I + FL+HQIRC M VLFLVG+G E PE++ QL +E+ RKPVY
Sbjct: 315 PEL------VSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQL--LERGDRKPVY 366
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P+ G PL L+ F NL W+ + V +L + + L ++A++ M
Sbjct: 367 PLADGTPLVLWDCHFKNLQWNISKRAFMAVEHELQDIATALFLRASLANSM 417
>gi|344301779|gb|EGW32084.1| hypothetical protein SPAPADRAFT_61166 [Spathaspora passalidarum
NRRL Y-27907]
Length = 411
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 171/302 (56%), Gaps = 21/302 (6%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R +A++ Y G+NY+G +Q + + T+ +L AL K LI++ + F+ CGRTD
Sbjct: 45 RFVAIRFAYLGWNYNGLAYQKEETPLPTVEGTILDALHKAKLIKEPTVDCCKFSRCGRTD 104
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVAWS-PVPEK 112
GVSA QV++L +RS LT P E++D + E+ Y +LN+ LP DI++ A S P K
Sbjct: 105 KGVSAMNQVISLNVRSSLT-PEEQADSSNDVKEVKYATILNSLLPPDIRITAISLRPPPK 163
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C R+YKY F + LDIDAM++AAQ GTHDFRN CK++ + + R +
Sbjct: 164 FDARFSCESRHYKYLFLKQQLDIDAMNQAAQLYEGTHDFRNFCKVDGSKQISRYERDIYS 223
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + D ++ F+++ FLWHQ+RC+++VLFLVGQG E I+ L+D+
Sbjct: 224 AKIMPV-------DGIPDMYCFDLKGSAFLWHQVRCMVAVLFLVGQGLEPVSIVSDLMDV 276
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
+K+P KP + M PL LY F + W + +S + WS S + +
Sbjct: 277 DKFPTKPQFEMANDAPLVLYDCTFPEMEW----LSLSDMQALYQSKWSWTSFQGLVYDHQ 332
Query: 293 IK 294
IK
Sbjct: 333 IK 334
>gi|296423394|ref|XP_002841239.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637475|emb|CAZ85430.1| unnamed protein product [Tuber melanosporum]
Length = 483
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 170/313 (54%), Gaps = 53/313 (16%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNT---IAHHLLKALQKTCL-----IEDKEKS----- 48
R IAL+I Y G NY GF+ +S NT I H+ KAL K L IE +E++
Sbjct: 24 RHIALRIAYLGGNYTGFEYHANSPNTTNTIEEHIFKALLKARLVPCNGIEGEEETVLGWP 83
Query: 49 -----SFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDD------------------- 84
++ CGRTD+GVSAF QV+ +++RS P + +DD
Sbjct: 84 GDEVAEYSKCGRTDTGVSAFGQVIGVRVRSNRPLPKKPTDDVAEEGGEEGKEKTEFDDEK 143
Query: 85 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 132
+ELPY ++LN LP+DI+V+AW P P +SARF+C R+Y+Y+F
Sbjct: 144 DELPYPQILNRLLPKDIRVLAWCPHPPPTFSARFNCQQRHYRYFFTNPAIVPSPNSTVGN 203
Query: 133 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNIC 192
LDID M +AA+ VG HDFRN CK++ + F R++ HA + Q+ N+ +
Sbjct: 204 LDIDKMREAAKLYVGDHDFRNFCKLDASKQITRFDRVIHHADIVELPQSSPNNNP--KVY 261
Query: 193 EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
F + FLWHQ+R ++++LFL+ QG E+P ++ +++DI K PRKP+Y + L L+
Sbjct: 262 YFELHGSAFLWHQVRHMIAILFLIAQGLEQPSLVTEMLDISKNPRKPMYDIANDRALVLW 321
Query: 253 HTEFDN--LTWHY 263
F + L W Y
Sbjct: 322 DCIFPDGMLQWLY 334
>gi|71663014|ref|XP_818505.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70883761|gb|EAN96654.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 409
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 161/291 (55%), Gaps = 10/291 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A+++ Y G Y G Q + NT+ +++ AL+ LI A CGRTD GVS
Sbjct: 20 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 79
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A V +L +R+ + P + L Y MLN+ LP I++V W+ V + + ARF C+
Sbjct: 80 ALGNVFSLTVRAS-SWPTDSPQKPPLDYCAMLNSALPVTIRIVGWAYVDDTFDARFSCVG 138
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+F GL+++AM AA L G H+FRN CK +V N V N+ R V G+ ++
Sbjct: 139 RTYRYYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVN-VSNYERDVRSVGIFASEAF 197
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ + I + FL+HQIRC M VLFLVG+G E PE++ QL +E+ RKPVY
Sbjct: 198 PEL------VSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQL--LERGDRKPVY 249
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P+ G PL L+ F NL W+ + V +L + + L ++A++ M
Sbjct: 250 PLADGTPLLLWDCHFKNLQWNISKRAFMVVEHELQDIATALFLRASLANSM 300
>gi|18376136|emb|CAD21201.1| related to pseudouridine synthase 3 [Neurospora crassa]
Length = 669
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 168/347 (48%), Gaps = 88/347 (25%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R IALK Y G NY+GF+ Q+S+ +I L KAL K+CLI E ++ F C
Sbjct: 140 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKC 199
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSP-------GEESDD---------------------- 84
GRTD GVSAF QV+ +++RS P G E DD
Sbjct: 200 GRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAAAEVD 259
Query: 85 ----------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG- 132
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F Q
Sbjct: 260 HQKPEWDPIADEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAF 319
Query: 133 ------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
LDID M KAA+ G HDFRN CK++ G + NF R
Sbjct: 320 APMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSR 379
Query: 169 LV---------------THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVL 213
V + G+ + H + F++R FLWHQIR +++VL
Sbjct: 380 RVFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVAVL 439
Query: 214 FLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLT 260
FLVGQG E P I+QQL+D+EK PRKP Y M PL L+ F L+
Sbjct: 440 FLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFPKLS 486
>gi|448124451|ref|XP_004204922.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358249555|emb|CCE72621.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 432
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 162/269 (60%), Gaps = 19/269 (7%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIE--DKEKSSFACCGRTD 57
R IA+K Y G+NY G FQ + + T+ +LKAL+K LI D + CGRTD
Sbjct: 75 RFIAIKFAYLGWNYSGLSFQYEPTPLPTVEEEILKALEKAKLIPAVDPLSCDLSRCGRTD 134
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKVVA--WSPVPEK 112
GVSA QV++L +RS L ++S D ELPYL +LN+ LP DI+V A P P+
Sbjct: 135 RGVSAMNQVMSLTVRSNLAPEEQDSTSNDGRELPYLAILNSLLPPDIRVTAVCLHPPPD- 193
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
++ARF CL+R+Y+Y+F LD++ M KAA+ G HDFRN CK++ + N++R +
Sbjct: 194 FNARFSCLYRHYRYFFRPHDLDVELMSKAAKKYEGVHDFRNFCKIDGSKQITNYKREILS 253
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A V + +ND + + ++ FLWHQ+RC+ +VLFLVGQ +E ++I +L+++
Sbjct: 254 ADV------LPYNDELYML---ELKGTAFLWHQVRCMAAVLFLVGQKHESIDVIDELLNV 304
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+KYP KP + M PL L+ + ++ W
Sbjct: 305 DKYPSKPNFEMANDIPLVLFDCAYPSMEW 333
>gi|85083865|ref|XP_957207.1| hypothetical protein NCU01784 [Neurospora crassa OR74A]
gi|28918294|gb|EAA27971.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 608
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 168/347 (48%), Gaps = 88/347 (25%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R IALK Y G NY+GF+ Q+S+ +I L KAL K+CLI E ++ F C
Sbjct: 79 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKC 138
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSP-------GEESDD---------------------- 84
GRTD GVSAF QV+ +++RS P G E DD
Sbjct: 139 GRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAAAEVD 198
Query: 85 ----------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG- 132
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F Q
Sbjct: 199 HQKPEWDPIADEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAF 258
Query: 133 ------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
LDID M KAA+ G HDFRN CK++ G + NF R
Sbjct: 259 APMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSR 318
Query: 169 LV---------------THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVL 213
V + G+ + H + F++R FLWHQIR +++VL
Sbjct: 319 RVFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVAVL 378
Query: 214 FLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLT 260
FLVGQG E P I+QQL+D+EK PRKP Y M PL L+ F L+
Sbjct: 379 FLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFPKLS 425
>gi|154341677|ref|XP_001566790.1| putative pseudouridine synthase A-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064115|emb|CAM40310.1| putative pseudouridine synthase A-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 499
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 160/294 (54%), Gaps = 16/294 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L++ Y G + G Q +DNT+ + AL++ LI + +F CGRTD GVS
Sbjct: 60 RKIGLRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRVRLIPEDGPHNFGRCGRTDKGVS 119
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
A +L R+ T+ D +LP Y MLNN LP I++V + V +++ ARF
Sbjct: 120 ALGNAFSLTARASCTADA----DPQLPPLDYCSMLNNVLPSTIRIVGCALVDDRFDARFS 175
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
C+ R Y+Y+F GL++ AM +AA + +GTH+FRN C+M+V N V NF R V G+ +
Sbjct: 176 CVHRTYRYYFCHRGLNLAAMQEAAAFFLGTHNFRNFCQMDVVN-VSNFTRTVLSVGLHPS 234
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+ + I I + FL+HQIRC M VLFLVG+G E P ++Q ++++ K
Sbjct: 235 EELPEL------ISYLEITANSFLYHQIRCTMEVLFLVGRGLEAPSVVQTMLELGDC--K 286
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P YP+ G PL L+ FDN+ W V + L + + L I+AT M
Sbjct: 287 PTYPLADGTPLILWDCAFDNVQWQLSHSAFQAVEQVLQDISTALLIRATSAAAM 340
>gi|402588277|gb|EJW82210.1| pseudouridylate synthase [Wuchereria bancrofti]
Length = 353
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 162/282 (57%), Gaps = 31/282 (10%)
Query: 34 KALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDD--------- 84
KAL KT L+E E S+ GRTD GVSAF QV +L +RS G E +D
Sbjct: 3 KALIKTKLVESWENCSWNRSGRTDKGVSAFKQVASLIVRSN----GPEGEDVFWPNVAHA 58
Query: 85 -------NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA 137
EL Y+KMLN+ LP +I+V+AW+PVP +SAR++C R Y Y FP+ +I+A
Sbjct: 59 SSETAVKGELQYVKMLNSTLPTNIRVLAWAPVPRNFSARYNCTQRTYTYAFPRNNFNIEA 118
Query: 138 MHKAAQYLVGTHDFRNLCKMNVGNGVV--NFRRLVTHAGVTSAWQNVQFND------SHH 189
M +A + LVG HDFRN C++++ V N+ R +T+A ++ N + + +
Sbjct: 119 MRQACRLLVGEHDFRNFCRIDMNKKRVEMNYIRTITYADISFISNNSMSSSKLSNEATRY 178
Query: 190 NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPL 249
+ I+ +GFLWHQIRCIM++L +G GNEKP II +L+DI+ P KP+Y + PL
Sbjct: 179 EFLQLTIKGKGFLWHQIRCIMALLCEIGLGNEKPNIITELLDIKLIPSKPIYGLAPAFPL 238
Query: 250 NLYHTEFDN--LTWHYDEIEVSHVLRDLHEDWS-LLSIKATM 288
L+ ++ L W +D + + + + + W+ S+ AT+
Sbjct: 239 CLFDCSYEGTELPWRWDTNSLKSIRKLILKTWAHYQSVSATL 280
>gi|365983330|ref|XP_003668498.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
gi|343767265|emb|CCD23255.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
Length = 439
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 29/311 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIED--KEKSSFACCGRTD 57
R IALK Y G+NY+G +Q + T+ +++A+ + L+ ++ SF+ CGRTD
Sbjct: 82 RFIALKFAYLGWNYNGLAMQKEATPLPTVEGKIIEAMYTSKLVPSMVPQEYSFSRCGRTD 141
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++LK+RS LT + E+D E+ Y+ +LN LP DI+V V P PE
Sbjct: 142 KGVSAMSQVISLKVRSNLTDEEQKRPENDPREIRYVHILNQLLPDDIRVSAVCLRP-PEG 200
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C R+YKY F GLDI M +A+ G HDFRN CK++ + N RR +
Sbjct: 201 FDARFSCDSRHYKYLFEADGLDISKMKEASSKYEGDHDFRNFCKLDGSKQITNHRRTIIS 260
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + NI F++ + FLWHQ+RC+M+ L LVGQG E+ +I+ ++DI
Sbjct: 261 AKILHV---------EGNIYCFDLVGRAFLWHQVRCMMANLLLVGQGLEEVSLIEDMLDI 311
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSLLSIKA 286
EK P+KP+Y M PL LY +F + W +YD ++ + L + L KA
Sbjct: 312 EKTPQKPIYDMADDLPLLLYDCKFPEMEWIESNLNNYDAVKYGKAVNALALHYQL---KA 368
Query: 287 TMLGEMIKDTV 297
T++ + K+T+
Sbjct: 369 TIVN-IFKNTL 378
>gi|255088059|ref|XP_002505952.1| predicted protein [Micromonas sp. RCC299]
gi|226521223|gb|ACO67210.1| predicted protein [Micromonas sp. RCC299]
Length = 290
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 158/279 (56%), Gaps = 26/279 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDK---EKSSFACCGR 55
R +AL ++Y G++Y GF Q + + T+ L +AL++ LI + + CGR
Sbjct: 13 RHVALHVMYAGWDYRGFASQGAERDGVRTVEEALFRALKRVRLIAPDATWKTCDYTRCGR 72
Query: 56 TDSGVSAFCQVVTLKIRSK------------LTSPGEESDDNELPYLKMLNNNLPRDIKV 103
TD+GVSA QVV+ ++R + L+ G + +E+ Y +LN LPRDI++
Sbjct: 73 TDAGVSALGQVVSARLRCRVPRRDDDDDDDDLSETGRLHEGDEIDYPAVLNRALPRDIRI 132
Query: 104 VAWSPVPEKYSARFDCLFRNYKYWFPQ-AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 162
+ W+ VP +SARFDC +R+YKY+F GLD+ AM++AA VG HDFRN CKM+ N
Sbjct: 133 LGWTYVPPAFSARFDCDYRHYKYFFTDWNGLDVRAMNEAASAFVGEHDFRNFCKMDARN- 191
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V N+RR + V A + + FLWHQ+RCI SVLFLVG G E
Sbjct: 192 VHNYRRRIDSCRVVLA------AGEPPGVAHIEVVGTAFLWHQVRCIASVLFLVGLGREP 245
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
P ++ ++D+ + PRKP Y M EPL L+ F ++++
Sbjct: 246 PGVVAHMLDLARCPRKPQYEMAPEEPLLLWRCGFRDVSF 284
>gi|344228480|gb|EGV60366.1| hypothetical protein CANTEDRAFT_127546 [Candida tenuis ATCC 10573]
Length = 415
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 157/268 (58%), Gaps = 17/268 (6%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEKS--SFACCGRTD 57
R +A++ Y G+NY+G FQ + + T+ +LKAL L++D E F+ CGRTD
Sbjct: 52 RFVAIRFAYLGWNYNGLAFQFEDTPLPTVEEQILKALATAKLVKDAEPGCCDFSRCGRTD 111
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKVVAWS-PVPEKY 113
GVSA QV++L++RS + ++ +DD E+PY+ +LN+ LP DI+V A S P K+
Sbjct: 112 KGVSAMNQVISLRVRSDFSPEDQQLQSNDDKEIPYIFILNSILPPDIRVTAISLRPPPKF 171
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
ARF C +R+Y+Y + GLD+D + AA G+HDFRN CK++ + N+RR + H+
Sbjct: 172 DARFSCEYRHYRYLIAKEGLDLDLLQAAAAKYKGSHDFRNFCKIDGSKQITNYRREIYHS 231
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ W + +++ FLWHQ+R +++V+ +GQG+E+ +I L D+E
Sbjct: 232 QII-PWDD--------EFVMLDLKGSAFLWHQVRYMVAVILSIGQGHEQMSLIDNLFDVE 282
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
KYP KP Y + PL LY + + W
Sbjct: 283 KYPSKPNYELANDVPLILYDCVYPEMEW 310
>gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698445|sp|Q9UTB3.1|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05
gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 450
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 159/303 (52%), Gaps = 28/303 (9%)
Query: 4 IALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
+A K Y G+NY+G +Q++ + T+ + +AL + LI D SF+ CGRTD GVS
Sbjct: 94 VAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFSRCGRTDKGVS 153
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QV++L +R S+ + Y +LN LP DI++ ++ PE + ARF C
Sbjct: 154 AMGQVISLNVR--------HSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQ 205
Query: 122 RNYKYWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
R+YKY F P LDID M++AA +G HDFRN CK++ + N+ R + + V
Sbjct: 206 RHYKYLFTKDYPGGSLDIDRMNEAAALYLGEHDFRNFCKIDASKQITNYHRRILSSKVIC 265
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
D + F+++ FLWHQ+RC+M++LFL+GQ E +I L+DI+K P
Sbjct: 266 I-------DPSTGLYAFDLQGTAFLWHQVRCMMAILFLIGQKLEPASLINDLLDIKKVPT 318
Query: 238 KPVYPMVRGEPLNLYHTEFDNLTWHYDEIE-------VSHVLRDLHEDWSLLSIKATMLG 290
KP+Y M PL LY +FDN+ W H ++ W L I+ +
Sbjct: 319 KPIYDMASEYPLILYDCDFDNIEWTLPTDSPTTAPRIAKHTYETIYHQWHSLRIREQIAS 378
Query: 291 EMI 293
M+
Sbjct: 379 FML 381
>gi|363755522|ref|XP_003647976.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892012|gb|AET41159.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
Length = 431
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 173/305 (56%), Gaps = 25/305 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIED--KEKSSFACCGRTD 57
R IALK Y G+NY+G IQ T+ +L+A+ K L+ + +F+ CGRTD
Sbjct: 82 RFIALKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMSKCKLVPSMVPQDYNFSRCGRTD 141
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L +RS LT+ + +D E+PY+ +LN LP DI+V V P PE
Sbjct: 142 KGVSAMNQVISLSVRSNLTAEEQLDPANDSKEIPYVHILNQLLPDDIRVSAVCLRP-PEG 200
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C +R+YKY F + L+ID M +AA+ +G HDFRN CK++ + N++R++
Sbjct: 201 FDARFSCKYRHYKYLFKKDSLNIDLMQEAAKMYIGEHDFRNFCKLDGSKQITNYKRVILS 260
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + ++ F++ FLWHQ+RC+M+ LFL+GQ E +I L+
Sbjct: 261 SQILHI---------DGDMYCFDLIGSAFLWHQVRCMMANLFLIGQELEDISLISNLLSP 311
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSLLSIKA 286
KYP+KP+Y + PL LY +F+N+ W + ++ S ++ + D+ L S +
Sbjct: 312 SKYPQKPIYELASDIPLILYDCKFENIEWLDPDLTNDKTMKSSRIVDSVELDYKLKSTIS 371
Query: 287 TMLGE 291
++L E
Sbjct: 372 SLLKE 376
>gi|348675907|gb|EGZ15725.1| hypothetical protein PHYSODRAFT_346666 [Phytophthora sojae]
Length = 553
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 171/321 (53%), Gaps = 35/321 (10%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR +A+K LY G Y GF Q T+ +LL+AL ++ LIE+ + + ++ CGRTD GV
Sbjct: 115 MRAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKLIENVDDAGYSRCGRTDRGV 174
Query: 61 SAFCQVVTLKIRSKLTS--------------PGE------ESDD----NELPYLKMLNNN 96
SAF QVV L+IRS L + PG+ ES + E+ Y +N
Sbjct: 175 SAFGQVVALRIRSNLPATAELLSAPSIDDVRPGDKFQVRLESGEIKTLTEVDYASHINRA 234
Query: 97 LPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 156
LP DI+V + + ++SARFDC R Y+Y+F + LDI+ M AAQ+LVG HDFRN C+
Sbjct: 235 LPADIRVYSVASCRPEFSARFDCKARMYRYFFVRRDLDIEKMRTAAQFLVGKHDFRNFCR 294
Query: 157 MNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLV 216
++ N V R + + V Q +D + + + FLWHQ+RC++ VLFL+
Sbjct: 295 ID-PNCHVYERNVRSFEIVECPGQRA--DDPSQQMFRCEVFGRAFLWHQVRCMVEVLFLI 351
Query: 217 GQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN--------LTWHYDEIEV 268
G G E+P II +L+DI + PRKP Y M PL L+ F + + + +
Sbjct: 352 GSGQEEPSIIPRLLDIAQTPRKPQYDMASDLPLVLHDCYFADPDDAEGSGPRFENTPLAL 411
Query: 269 SHVLRDLHEDWSLLSIKATML 289
V L E W S++A ML
Sbjct: 412 LQVHAQLTEMWEKRSVQAAML 432
>gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
Length = 438
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 159/267 (59%), Gaps = 17/267 (6%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIE--DKEKSSFACCGRT 56
+R IALK Y G+NY G +Q + + TI +L+AL++ +I + +F+ CGRT
Sbjct: 63 IRQIALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRT 122
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKV--VAWSPVPE 111
D GVSA QV+ L +RS+LT ES +N EL Y+ +LN LP DI++ V P P+
Sbjct: 123 DKGVSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGVCLRP-PK 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ ARF C R+YKY F GLD+++M KAA G HDFRN CK++ + N+ R V
Sbjct: 182 GFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTNYTRAVR 241
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ + + H F+++ FLWHQ+RC++++L ++GQG E P+I+ +L+D
Sbjct: 242 SSQILPL-------EGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIVSKLLD 294
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDN 258
I+ +P+KPVY M PL LY +D+
Sbjct: 295 IQSHPQKPVYVMAHDIPLVLYDCIYDD 321
>gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Komagataella pastoris CBS 7435]
Length = 422
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 159/267 (59%), Gaps = 17/267 (6%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIE--DKEKSSFACCGRT 56
+R IALK Y G+NY G +Q + + TI +L+AL++ +I + +F+ CGRT
Sbjct: 47 IRQIALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRT 106
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKV--VAWSPVPE 111
D GVSA QV+ L +RS+LT ES +N EL Y+ +LN LP DI++ V P P+
Sbjct: 107 DKGVSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIHGVCLRP-PK 165
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ ARF C R+YKY F GLD+++M KAA G HDFRN CK++ + N+ R V
Sbjct: 166 GFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTNYTRAVR 225
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ + + H F+++ FLWHQ+RC++++L ++GQG E P+I+ +L+D
Sbjct: 226 SSQILPL-------EGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIVSKLLD 278
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDN 258
I+ +P+KPVY M PL LY +D+
Sbjct: 279 IQSHPQKPVYVMAHDIPLVLYDCIYDD 305
>gi|367011433|ref|XP_003680217.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
gi|359747876|emb|CCE91006.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
Length = 437
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 173/323 (53%), Gaps = 27/323 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIE--DKEKSSFACCGRTD 57
R IALK Y G+NY+G +Q T+ +++AL K L+ D F+ CGRTD
Sbjct: 84 RFIALKFAYLGWNYNGLAVQKEPTPLPTVEGVIIEALNKCKLVPSLDPHDFRFSRCGRTD 143
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-Y 113
GVSA QV++L +RS L+ + ++D E+ Y+ +LN LP DI+V A S P K +
Sbjct: 144 KGVSAMSQVISLFVRSNLSEEEQSDPKNDSKEIQYVNILNQLLPEDIRVSAVSLRPPKGF 203
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
ARF C +R+Y+Y F + GLD+ M +AA G HDFRN CK++ + N+ R + A
Sbjct: 204 DARFSCQYRHYRYLFHKDGLDVGRMDQAAALFKGEHDFRNFCKLDGSKQITNYARNIISA 263
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ S C F++ FLWHQ+RC+M+ LFLVGQG E +I ++D++
Sbjct: 264 KIIPL--------SGDFYC-FDLIGSAFLWHQVRCMMANLFLVGQGLENVSLISDMLDVD 314
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSLLSIKAT 287
K PRKP+Y M PL LY +F ++ W Y I+ + L + L + A
Sbjct: 315 KTPRKPIYDMASDIPLILYDCKFPDIEWVETNVDDYKAIKYGKAVSALTLSYHLKATVAQ 374
Query: 288 MLGEMIKDTVRE----SKCTMGD 306
+ E++ T E ++ +GD
Sbjct: 375 IFKEVLPSTATELSGKTRINLGD 397
>gi|260781560|ref|XP_002585875.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
gi|229270936|gb|EEN41886.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
Length = 312
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 135/219 (61%), Gaps = 21/219 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALK+ Y G++Y GFQ Q ++DNTI L +AL KT LIE ++ S++ CGRTD GVS
Sbjct: 68 RHVALKVAYLGWSYDGFQSQETTDNTIEARLFEALTKTRLIEKRQSSNYHRCGRTDKGVS 127
Query: 62 AFCQVVTLKIRSKLTS-----PGEESDDN--------ELPYLKMLNNNLPRDIKVVAWSP 108
AF QV++L +R+ LT P E N E+ Y+ +LN LP DI+V+AW+P
Sbjct: 128 AFGQVISLDLRTNLTDGAGVIPRPEGTANHREGDKTTEIKYVYILNKVLPPDIRVLAWAP 187
Query: 109 VPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF-R 167
V +SARF C R YKY+FP+ LDI +MH A Q LVG HDFRN CKM+V N VV F R
Sbjct: 188 VDPDFSARFSCQQRTYKYFFPKGNLDIQSMHLAGQKLVGEHDFRNFCKMDVANRVVTFIR 247
Query: 168 RLV-THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQ 205
R++ TH VT + +CEF + FLWHQ
Sbjct: 248 RIISTHVCVTGE------ETGGYQMCEFQVVGNAFLWHQ 280
>gi|380094960|emb|CCC07462.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 666
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 170/341 (49%), Gaps = 83/341 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R IALK Y G NY+GF+ Q+S+ +I L KAL K+CL+ E ++ F C
Sbjct: 142 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLVFPERPDEVDFGPWEYSKC 201
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEE--------SDD--------------------- 84
GRTD GVSAF QV+ +++RS P EE DD
Sbjct: 202 GRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGGNGGDDVVMTEPQQQEAEKATDVEHQK 261
Query: 85 -------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG---- 132
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F Q
Sbjct: 262 PEWDPIADEVPYCRVLNRLLPPDIRIMAWAPALPPNFSARFSCRERQYRYFFTQPAFAPM 321
Query: 133 ----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
LDI M +AA+ G HDFRN CK++ G + NF R + + +
Sbjct: 322 PSSLEPLAKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDIV 381
Query: 177 SAWQNVQFN-----------------DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
++V+ + SH + F++R FLWHQIR +++VLFLVGQG
Sbjct: 382 EV-KDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQG 440
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLT 260
E P I+QQL+D+EK PRKP Y M PL L+ F L
Sbjct: 441 LEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFPKLA 481
>gi|336272077|ref|XP_003350796.1| hypothetical protein SMAC_02466 [Sordaria macrospora k-hell]
Length = 603
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 170/341 (49%), Gaps = 83/341 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R IALK Y G NY+GF+ Q+S+ +I L KAL K+CL+ E ++ F C
Sbjct: 79 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLVFPERPDEVDFGPWEYSKC 138
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEE--------SDD--------------------- 84
GRTD GVSAF QV+ +++RS P EE DD
Sbjct: 139 GRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGGNGGDDVVMTEPQQQEAEKATDVEHQK 198
Query: 85 -------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG---- 132
+E+PY ++LN LP DI+++AW+P +P +SARF C R Y+Y+F Q
Sbjct: 199 PEWDPIADEVPYCRVLNRLLPPDIRIMAWAPALPPNFSARFSCRERQYRYFFTQPAFAPM 258
Query: 133 ----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
LDI M +AA+ G HDFRN CK++ G + NF R + + +
Sbjct: 259 PSSLEPLAKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDIV 318
Query: 177 SAWQNVQFN-----------------DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
++V+ + SH + F++R FLWHQIR +++VLFLVGQG
Sbjct: 319 EV-KDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQG 377
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLT 260
E P I+QQL+D+EK PRKP Y M PL L+ F L
Sbjct: 378 LEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFPKLA 418
>gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
Length = 447
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 155/269 (57%), Gaps = 19/269 (7%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEKSS--FACCGRTD 57
R +A + Y G+NY+G FQ + + T+ +L+A+ K L+ + + +S F+ CGRTD
Sbjct: 84 RFVAFRFAYMGWNYNGLNFQNEPTPLPTVEEEILQAMTKAKLVPEADPASCNFSRCGRTD 143
Query: 58 SGVSAFCQVVTLKIRSKLTS---PGEESDDNELPYLKMLNNNLPRDIKVVA--WSPVPEK 112
GVSA QV++L +RS L+ +E D ELPYL +LN LP DI++ A P P
Sbjct: 144 KGVSALNQVISLDVRSALSKEEHADKEKDVKELPYLTILNALLPPDIRITAVCLRP-PPN 202
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
++ARF C +R+YKY F + LD+D M +AA G HDFRN CK++ + N R V
Sbjct: 203 FNARFSCKYRHYKYLFKKTDLDVDLMQEAALKYEGPHDFRNFCKIDGSKQITNHCREVYS 262
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + F D + F+++ FLWHQ+RC+++VLF VGQ E P I+ L+++
Sbjct: 263 ARIE------HFKDDFY---VFDLKGTAFLWHQVRCMVAVLFSVGQKLESPSIVDDLLNV 313
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
K+P KP+Y M PL LY F + W
Sbjct: 314 SKFPSKPIYEMANDVPLVLYDCVFPEMEW 342
>gi|353229978|emb|CCD76149.1| putative pseudouridylate synthase [Schistosoma mansoni]
Length = 1030
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 147/268 (54%), Gaps = 19/268 (7%)
Query: 41 LIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLT-------------SPGEESDDNEL 87
I D+ + F+ CGRTD GVS CQV++L RS + S ++ D E+
Sbjct: 685 FIFDRNECDFSVCGRTDRGVSGMCQVISLVSRSLIARGVGVIEDSGPCISERQDVPDEEM 744
Query: 88 PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVG 147
Y+ LN NLPRDI+V+AWSPV +SARF C R+Y+Y+FP++GLDI +M A LVG
Sbjct: 745 DYVSALNRNLPRDIRVLAWSPVSPDFSARFMCCKRSYEYYFPESGLDIKSMIDAGNRLVG 804
Query: 148 THDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIR 207
HDFRN C + V F R + V+ +V D H +C +I + GFL+HQIR
Sbjct: 805 VHDFRNFCASRIEKDTVTFIREIFEVVVS----DVDSCDHHSKLCRISISASGFLYHQIR 860
Query: 208 CIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN--LTWHYDE 265
+MS+LF+VG+G E P ++ ++D+ K P KP Y + PL + L W E
Sbjct: 861 FVMSILFMVGRGYESPSVVDDMLDLSKTPAKPQYQLAADFPLLFIAGIYPESCLNWETSE 920
Query: 266 IEVSHVLRDLHEDWSLLSIKATMLGEMI 293
+++ + WS I++ ++ M+
Sbjct: 921 AARLDLVKHYQKLWSEYGIRSAIVRRML 948
>gi|256087925|ref|XP_002580112.1| pseudouridylate synthase [Schistosoma mansoni]
Length = 1304
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 147/268 (54%), Gaps = 19/268 (7%)
Query: 41 LIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLT-------------SPGEESDDNEL 87
I D+ + F+ CGRTD GVS CQV++L RS + S ++ D E+
Sbjct: 959 FIFDRNECDFSVCGRTDRGVSGMCQVISLVSRSLIARGVGVIEDSGPCISERQDVPDEEM 1018
Query: 88 PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVG 147
Y+ LN NLPRDI+V+AWSPV +SARF C R+Y+Y+FP++GLDI +M A LVG
Sbjct: 1019 DYVSALNRNLPRDIRVLAWSPVSPDFSARFMCCKRSYEYYFPESGLDIKSMIDAGNRLVG 1078
Query: 148 THDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIR 207
HDFRN C + V F R + V+ +V D H +C +I + GFL+HQIR
Sbjct: 1079 VHDFRNFCASRIEKDTVTFIREIFEVVVS----DVDSCDHHSKLCRISISASGFLYHQIR 1134
Query: 208 CIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN--LTWHYDE 265
+MS+LF+VG+G E P ++ ++D+ K P KP Y + PL + L W E
Sbjct: 1135 FVMSILFMVGRGYESPSVVDDMLDLSKTPAKPQYQLAADFPLLFIAGIYPESCLNWETSE 1194
Query: 266 IEVSHVLRDLHEDWSLLSIKATMLGEMI 293
+++ + WS I++ ++ M+
Sbjct: 1195 AARLDLVKHYQKLWSEYGIRSAIVRRML 1222
>gi|385300994|gb|EIF45229.1| putative trna pseudouridine synthase [Dekkera bruxellensis
AWRI1499]
Length = 443
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 156/267 (58%), Gaps = 15/267 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLIEDKEKSSF--ACCGRTD 57
R IALK Y G++Y G +Q + T+ ++KALQ+ L++ + F + CGRTD
Sbjct: 85 RHIALKFSYLGWDYQGLALQGLPTDRPTVEEVIIKALQQVRLVQSANPADFLFSRCGRTD 144
Query: 58 SGVSAFCQVVTLKIRSKLTSP--GEESDDN-ELPYLKMLNNNLPRDIKVVAWSPVPEK-Y 113
GVSA QV++L++RS+LT + ++DN EL Y+KMLN+ LP DI+ A P K +
Sbjct: 145 RGVSAMNQVISLRVRSRLTKEQLKDPANDNLELDYIKMLNHVLPADIRFHAICVRPPKGF 204
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
ARF C +R YKY F GLDID M KAAQ VG HDFRN CK++ + NF R V
Sbjct: 205 DARFSCQWRQYKYIFNSKGLDIDRMRKAAQMFVGQHDFRNFCKVDGSKQLKNFTREVYST 264
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ S Q F+ F+++ FLWHQ+R +++VL +GQ E+P I++ L++I
Sbjct: 265 AIESLEQEPGFS-------VFDLKGSAFLWHQVRYMVAVLLTIGQKLEEPTIVKDLLNIN 317
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLT 260
YP +P Y + PL LY +D T
Sbjct: 318 MYPCRPAYKLAHDIPLILYDCGYDPQT 344
>gi|410076082|ref|XP_003955623.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
gi|372462206|emb|CCF56488.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
Length = 436
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 159/269 (59%), Gaps = 18/269 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIED--KEKSSFACCGRTD 57
R IALK Y G+NY+G IQ T+ +L+A+ K LI ++ +F+ CGRTD
Sbjct: 86 RFIALKFAYLGWNYNGLAIQKEVTKLPTVEGTILEAMNKCKLIPSMVPQEYNFSRCGRTD 145
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVAWS-PVPEKY 113
GVSA QV++L++RS LT + ++D E+ Y+ +LN LP DI+V A S P +
Sbjct: 146 KGVSAMNQVISLRVRSNLTEEEQMDPQNDVREIQYVTILNQLLPADIRVFAVSLRPPPGF 205
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
ARF C R+YKY F +GL++ M +AA++ G HDFRN CK++ + N++R + A
Sbjct: 206 DARFSCKARHYKYIFHNSGLNLTKMEEAAKFFEGEHDFRNFCKIDGSKQITNYKRTILSA 265
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ +N F++ FLWHQ+RC+M+ LFLVGQ E+P++I ++D+
Sbjct: 266 KILKI---------SNNFYCFDLIGSAFLWHQVRCMMANLFLVGQELEEPQLIPDMMDVV 316
Query: 234 KYPRKPVYPMVRGEPLNLYHTEF-DNLTW 261
K P+KP+Y M PL LY +F D++ W
Sbjct: 317 KTPQKPIYEMASDVPLLLYDCKFPDDVEW 345
>gi|261328820|emb|CBH11798.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 458
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 160/291 (54%), Gaps = 10/291 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL++ Y G Y G Q + NT+ +L+ AL++ +E F+ CGRTD GVS
Sbjct: 55 RKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVS 114
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A VV+ R+ + +E L Y + LNN LP I++V WS V + ARF C
Sbjct: 115 ALGNVVSFTSRAS-SWATDEHQQPPLDYCEKLNNVLPPTIRIVGWSYVNADFDARFSCTG 173
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+F GL+++AM KA YL G H+FRN CK +V N V N+ R V HA + +
Sbjct: 174 RTYRYYFCNRGLNLEAMRKAVGYLKGVHNFRNFCKTDVVN-VNNYERHVRHADIVGSEML 232
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ F I + FL++QIRC M VLFLVG+ E+PE+++QL+D RKPVY
Sbjct: 233 PDL------VSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLDCGD--RKPVY 284
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P+ PL L+ F+ + W+ + + +L + + L I++T+ M
Sbjct: 285 PLADATPLVLWECHFEGVRWNISQRACLNAESELLDIATALLIRSTVAFSM 335
>gi|72390247|ref|XP_845418.1| pseudouridine synthase A-like protein [Trypanosoma brucei TREU927]
gi|62360588|gb|AAX81000.1| pseudouridine synthase A-like protein, putative [Trypanosoma
brucei]
gi|70801953|gb|AAZ11859.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 428
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 160/291 (54%), Gaps = 10/291 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL++ Y G Y G Q + NT+ +L+ AL++ +E F+ CGRTD GVS
Sbjct: 25 RKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVS 84
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A VV+ R+ + +E L Y + LNN LP I++V WS V + ARF C
Sbjct: 85 ALGNVVSFTSRAS-SWATDEQQQPPLDYCEKLNNVLPPTIRIVGWSYVNADFDARFSCTG 143
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+F GL+++AM KA YL G H+FRN CK +V N V N+ R V HA + +
Sbjct: 144 RTYRYYFCNRGLNLEAMRKAVGYLKGVHNFRNFCKTDVVN-VNNYERHVRHADIVGSDML 202
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ F I + FL++QIRC M VLFLVG+ E+PE+++QL+D RKPVY
Sbjct: 203 PDL------VSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLDCGD--RKPVY 254
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P+ PL L+ F+ + W+ + + +L + + L I++T+ M
Sbjct: 255 PLADATPLVLWECHFEGVRWNISQRACLNAESELLDIATALLIRSTVAFSM 305
>gi|448122103|ref|XP_004204367.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358349906|emb|CCE73185.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 430
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 160/269 (59%), Gaps = 19/269 (7%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIE--DKEKSSFACCGRTD 57
R IA+K Y G+NY G FQ + + T+ +LKAL+K +I D + CGRTD
Sbjct: 73 RFIAIKFAYLGWNYSGLSFQYEPAPLPTVEEEILKALEKAKIIPAVDPLCCDLSRCGRTD 132
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKVVA--WSPVPEK 112
GVSA QV++L +RS L ++S D ELPYL +LN+ LP DI+V A P P
Sbjct: 133 RGVSAMNQVMSLTVRSNLAPEEQDSTSNDGRELPYLAILNSLLPPDIRVTAVCLHP-PPN 191
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
++ARF CL+R Y+Y+F LD++ M KAA+ G HDFR+ CK++ + N++R +
Sbjct: 192 FNARFSCLYRQYRYFFRPHDLDVELMSKAAKKYEGVHDFRSFCKIDGSKQITNYKREILS 251
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A V + ++D + + ++ FLWHQ+RC+ +VLFLVGQ +E ++I +L+++
Sbjct: 252 ADV------LPYDDELYML---ELKGTAFLWHQVRCMAAVLFLVGQKHESIDVIDELLNV 302
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+KYP KP Y M PL L+ + ++ W
Sbjct: 303 DKYPSKPNYEMANDIPLVLFDCVYPSMEW 331
>gi|342181526|emb|CCC91005.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 446
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 167/292 (57%), Gaps = 12/292 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL++ Y G Y+G Q + NT+ ++ AL++ L++ + CGRTD GVS
Sbjct: 43 RKIALRLAYHGHVYNGLVRQAETPNTVEAFVVDALRRLNLVDPSGPKDLSRCGRTDKGVS 102
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A ++ RS + P +E+ L Y MLNN LP I++V W+ V + + ARF C+
Sbjct: 103 ALGNALSFTARSS-SWPADENQKQPLDYCAMLNNVLPPTIRIVGWAYVEDCFDARFSCVG 161
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+F GL+++AM +A YL G H+FR+ CK +V N V N+ R V HA + ++
Sbjct: 162 RTYRYYFCHQGLNLEAMREAVGYLKGVHNFRSFCKTDVVN-VSNYERHVRHASIVTS--- 217
Query: 182 VQFNDSHHNICE-FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
D ++ F I + FL++QIRC M VLFLVG+ E+P+++ +L +E+ KPV
Sbjct: 218 ----DLLPDVVSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPDVVLKL--LERGDCKPV 271
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
YP+V PL L+ F+N+ W+ + R++ + + L I+A++ M
Sbjct: 272 YPLVDPTPLVLWECHFENVQWNISRRALLSAEREMLDIATALMIRASVASSM 323
>gi|403375889|gb|EJY87920.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 482
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 168/299 (56%), Gaps = 25/299 (8%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDK---EKSSFACCGRTDSGV 60
IA K Y G +Y G IQT++D TI + AL++ CL++ KS + CGRTD GV
Sbjct: 105 IAFKFSYLGKDYKGLAIQTNTDETIEGRIFAALKRACLVQPDIPIFKSQYTRCGRTDKGV 164
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
SA V++L +R KL DDN Y ++LN+ LP DI+++++S VP + +RF C+
Sbjct: 165 SALGNVLSLYVR-KL------KDDN---YCQVLNHCLPADIRMISFSEVPAHFDSRFSCI 214
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV------VNFRRLVTHAG 174
+R YKY+F Q ++I+ M +AA+ +G HDFRN CK + + NF R +
Sbjct: 215 YREYKYFFVQQNMNIEKMKQAARKYLGIHDFRNFCKKDESVKLEDDEDDQNFMRRIYRFD 274
Query: 175 VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+ NVQ + +I IR FLWHQ+RC+M+VLF++G+G E +I L DIEK
Sbjct: 275 IVQQHINVQ--NEKLSIWHVVIRGSAFLWHQVRCMMAVLFMIGRGEEDESVIDLLYDIEK 332
Query: 235 YPRKPVYPMVRGEPLNLYHTEFDNLTWH---YDEIEVSHVLRDLHEDWSL-LSIKATML 289
P +P Y + L L FD++ W + +E +V R +E+ ++ +S+ ML
Sbjct: 333 LPERPNYNIASEFGLILNECGFDDIEWSNPVFANVETYNVFRKQYEENAIDMSLNEIML 391
>gi|340054160|emb|CCC48454.1| putative pseudouridine synthase A-like protein [Trypanosoma vivax
Y486]
Length = 439
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 160/287 (55%), Gaps = 10/287 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A+++ Y G Y+G Q + NT+ H++ AL+K L+E S + CGRTD GVS
Sbjct: 34 RKVAMRLAYHGHIYNGLVRQLETPNTVEEHIVLALRKLHLVEPDGPSDLSRCGRTDKGVS 93
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A ++L +R+ + P +E L Y MLNN LP I++V W+ V + ARF C+
Sbjct: 94 ALGNALSLTVRAS-SWPWDEQQKTPLDYCNMLNNVLPPTIRIVGWTYVDSSFDARFSCVG 152
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+F GL+++AM AA L GTH+FRN CK +V N V N+ R V A + +
Sbjct: 153 RTYRYYFCHRGLNLEAMRDAAALLKGTHNFRNFCKTDVVN-VDNYERHVRRAEIVKSEML 211
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ + I + FL++QIRC M +LFL+G+G E+ ++ L + + +KPVY
Sbjct: 212 PEL------VSYLEIEANSFLYNQIRCTMEILFLIGRGLEESNVVTAL--LTRGDKKPVY 263
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
P+ PL L+ F+ + W + + ++L + + L I+AT+
Sbjct: 264 PLADATPLVLWDCHFEGINWRISSRAFTFIEKELQDIATALMIRATV 310
>gi|390365271|ref|XP_794710.3| PREDICTED: tRNA pseudouridine(38/39) synthase-like
[Strongylocentrotus purpuratus]
Length = 282
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 133/216 (61%), Gaps = 17/216 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G++YHGF +Q S+NT+ HHL +AL KT LIE ++ S+++ CGRTD GVS
Sbjct: 71 RHVALKITYLGWDYHGFVVQEDSNNTVEHHLFEALTKTKLIESRQTSNYSRCGRTDKGVS 130
Query: 62 AFCQVVTLKIRS----------KLTSPGEESDDN---ELPYLKMLNNNLPRDIKVVAWSP 108
AF QV+ + +R+ +L E N E+ Y MLN LP +I+V+AW+P
Sbjct: 131 AFGQVIAIDLRTNLLQGVGVIQRLDGTAHERTGNTTEEINYPLMLNRVLPSEIRVIAWTP 190
Query: 109 VPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
+ ARFD L R YKY+FP LD M++A+Q LVGT DFRN CKM+VGNGVV F R
Sbjct: 191 AEPSFHARFDTLHRTYKYFFPAGDLDTKLMNEASQKLVGTFDFRNFCKMDVGNGVVKFVR 250
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWH 204
+ A + + + + +CEF+I FL+H
Sbjct: 251 TIRSAEI----RKLDDSSGGFQMCEFSISGLAFLYH 282
>gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 387
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 158/307 (51%), Gaps = 27/307 (8%)
Query: 4 IALKILYQG-FNYHGFQIQTSSD---NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
+ALK+ + Y G Q NT+ + L K L KTCLIE + F+ CGRTD G
Sbjct: 54 MALKVCVEAVLRYAGVAWQNQEAFGVNTVENELFKGLVKTCLIESRMSCDFSRCGRTDKG 113
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFD 118
V A TL++R K D E PY++M+N LP DI+V+ VP + + ARF
Sbjct: 114 VHARGNYATLRLRLK-------PDGTEFPYIQMINRVLPDDIRVLRICSVPSDDFDARFS 166
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
C R YKY+FP GLD++ M +AAQ LVG HD+RN C+M+V NF R + + +
Sbjct: 167 CKSRTYKYFFPSTGLDLEVMAEAAQRLVGQHDYRNFCRMDV-EQTTNFERTIYSFEICNG 225
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
I I FLWHQ+RC+M VL L+G+G EKPE+I L DI K P K
Sbjct: 226 ----------DVISHAVITGSAFLWHQVRCMMEVLMLIGKGLEKPEVIDMLFDINKTPGK 275
Query: 239 PVYPMVRGEPLNLYHTEFD----NLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
P Y + G L L+ ++D + T DE V+ R L++ + G + K
Sbjct: 276 PSYDLADGAGLVLFDCKYDAEWFDQTVEDDEEAVAEFSRAAIAAQRDLAVLQCLAGPIAK 335
Query: 295 DTVRESK 301
T +S+
Sbjct: 336 TTEVQSR 342
>gi|366990335|ref|XP_003674935.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
gi|342300799|emb|CCC68563.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
Length = 444
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 175/325 (53%), Gaps = 31/325 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIE--DKEKSSFACCGRTD 57
R +AL+ Y G+NY+G IQ TI +L+AL + L+ + + F+ CGRTD
Sbjct: 86 RFVALRFAYLGWNYNGLAIQNEPTPLPTIEGKILEALHISRLVPSMNPREYQFSRCGRTD 145
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE----SDDNELPYLKMLNNNLPRDIKV--VAWSPVPE 111
GVSA QV++L++RS LT P E+ +D E+ Y+ +LN LP DI+V V P PE
Sbjct: 146 KGVSAMNQVISLRVRSNLT-PEEQLDPANDRREIKYVHILNQLLPDDIRVSAVCLRP-PE 203
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ ARF C R+YKY F GLDI M + A +G HDFRN CK++ + N++R V
Sbjct: 204 GFDARFSCESRHYKYLFSNDGLDISRMQEGATLFLGEHDFRNFCKLDGSKQITNYKRSVI 263
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
A + + D + C ++ FLWHQ+RC+M+ LFL+GQG E+P +I + D
Sbjct: 264 SAKI------LHIRDDLY--C-LDLVGSAFLWHQVRCMMAHLFLIGQGLEEPSLINDMFD 314
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSL---- 281
I K P+KP+Y M PL LY +F + W Y I+ + L ++ L
Sbjct: 315 IVKTPQKPIYDMASDIPLLLYDCKFPEMEWLESNLDDYSSIKYGKAVSALALNYQLRAAV 374
Query: 282 LSIKATMLGEMIKDTVRESKCTMGD 306
+ I T+L + +++ +GD
Sbjct: 375 VDIFKTVLPTSEANLFSKTRINVGD 399
>gi|397630300|gb|EJK69716.1| hypothetical protein THAOC_09000 [Thalassiosira oceanica]
Length = 617
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 171/389 (43%), Gaps = 104/389 (26%)
Query: 2 RPIALKILYQGFNYHGF--QIQTSSDNTIAHHLLKALQKTCL------------------ 41
R +ALK Y G + GF + T DN+I L AL+KT L
Sbjct: 83 RHVALKFSYDGSQFTGFAENVGTEGDNSIEKALFTALEKTRLLVSPEENGAFVLRKQSSH 142
Query: 42 ------------IEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLT------------- 76
I + + ++ CGRTD GV A QV+ + ++S
Sbjct: 143 QEDESEEGHGNAISARTAAQYSRCGRTDKGVHAHGQVIAMYLKSAFPLSAKAAIMGSDDS 202
Query: 77 -SPGEESDDNELP-------------------------------------YLKMLNNNLP 98
S GE+ D LP Y K+LNN LP
Sbjct: 203 RSQGEDLHDGSLPNNSLDKLECFVLPRRKKQGNAQVQLPAHELRTISEYDYAKVLNNVLP 262
Query: 99 RDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN 158
I+V+ W PV K+SARF C R Y+Y+FP+ L++DA+ + +Y++G HDFRNLCKMN
Sbjct: 263 SSIRVIGWCPVSPKFSARFSCSRRTYRYFFPRRDLNLDALAQGLKYMIGRHDFRNLCKMN 322
Query: 159 VGNGVVNFRRLVTHAGVTS-----------AWQNVQFN---------DSHHNICEFNIRS 198
V NF R++T V S A VQ +S H+IC I
Sbjct: 323 C-EQVYNFERVITSGDVVSPQKKFTLTQDPADSTVQLGARKLESAAKESPHDICHVQIEG 381
Query: 199 QGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
Q FLWHQIRCIMS+LFLVG+ E+P I++ L+D++ P KP Y M L L+ +F
Sbjct: 382 QAFLWHQIRCIMSILFLVGRELERPSIVRDLLDVKANPAKPAYDMASETALVLHDCKFTR 441
Query: 259 LTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
L + +V + L W ++ A
Sbjct: 442 LNPGQTVCNLWNVTKVLETRWETHAVAAA 470
>gi|146417456|ref|XP_001484697.1| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 162/271 (59%), Gaps = 23/271 (8%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEK--SSFACCGRTD 57
R IAL+ Y G+NY+G FQ + + T+ +L+AL K LI + + +F+ CGRTD
Sbjct: 70 RFIALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPDPLVCNFSRCGRTD 129
Query: 58 SGVSAFCQVVTLKIRSKLTS-----PGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVP 110
GVSA QV++L++RS LT PG +D E+PY+ +LN+ LP I++ + +P P
Sbjct: 130 KGVSAMNQVISLEVRSGLTEEQRSQPG--ADQKEIPYITILNSLLPPSIRITGICLNP-P 186
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+ ARF C +R+Y+Y F + LD++AM +AA+ G HDFRN CK++ + N+ R +
Sbjct: 187 PGFDARFSCSYRHYRYIFRRYDLDLEAMTEAAKKYEGEHDFRNFCKIDGSKQITNYGRTI 246
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
A + + D ++ F+++ FLWHQ+RC+M +LFLVG+ EKP ++ +L+
Sbjct: 247 LSANI------MPLKDDYY---VFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLVDELL 297
Query: 231 DIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+++ P KP Y M PL LY F ++ W
Sbjct: 298 NVDVNPNKPNYDMANDVPLVLYDCVFPDIEW 328
>gi|190346281|gb|EDK38328.2| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 162/271 (59%), Gaps = 23/271 (8%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEK--SSFACCGRTD 57
R IAL+ Y G+NY+G FQ + + T+ +L+AL K LI + + +F+ CGRTD
Sbjct: 70 RFIALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPDPLVCNFSRCGRTD 129
Query: 58 SGVSAFCQVVTLKIRSKLTS-----PGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVP 110
GVSA QV++L++RS LT PG +D E+PY+ +LN+ LP I++ + +P P
Sbjct: 130 KGVSAMNQVISLEVRSGLTEEQRSQPG--ADQKEIPYITILNSLLPPSIRITGICLNP-P 186
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+ ARF C +R+Y+Y F + LD++AM +AA+ G HDFRN CK++ + N+ R +
Sbjct: 187 PGFDARFSCSYRHYRYIFRRYDLDLEAMTEAAKKYEGEHDFRNFCKIDGSKQITNYGRTI 246
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
A + + D ++ F+++ FLWHQ+RC+M +LFLVG+ EKP ++ +L+
Sbjct: 247 LSANI------MPLKDDYY---VFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLVDELL 297
Query: 231 DIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+++ P KP Y M PL LY F ++ W
Sbjct: 298 NVDVNPNKPNYDMANDVPLVLYDCVFPDIEW 328
>gi|150865972|ref|XP_001385404.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
gi|149387228|gb|ABN67375.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 465
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 171/307 (55%), Gaps = 27/307 (8%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IALK Y G+NY+G +Q + + T+ +LKAL + LI + +K F+ CGRTD
Sbjct: 89 RFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMSRLITEPTPDKCKFSRCGRTD 148
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKVVA--WSPVPEK 112
GVSA QV++L +RS L + E+D E+ YL ++N LP DI++ A P P K
Sbjct: 149 KGVSAMNQVISLVVRSNLNEEEQLLKENDHKEIKYLSIINALLPPDIRMTAVCLRP-PPK 207
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C +R+Y+Y F + LDI+ M++A +G+HDFRN CK++ + N+ R V
Sbjct: 208 FDARFSCDYRHYRYLFKKHDLDIELMNEACIKYIGSHDFRNFCKIDGSKQITNYVREVYS 267
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + D + + +++ FLWHQ+RC++++LFL+GQ E II+ L D+
Sbjct: 268 MKI------IHLKDDFYAV---DLKGSAFLWHQVRCMVAILFLIGQKLEATTIIEDLFDL 318
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLL-------SIK 285
EKYP KPVY M PL LY + + W I + ++ +++ +K
Sbjct: 319 EKYPTKPVYEMANDIPLVLYDCIYPEMEW-LSPIGSEGTIEKFYKHFAMFRGQVLDYQVK 377
Query: 286 ATMLGEM 292
A M+G M
Sbjct: 378 ANMIGIM 384
>gi|406603476|emb|CCH45032.1| putative tRNA pseudouridine synthase [Wickerhamomyces ciferrii]
Length = 412
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 171/310 (55%), Gaps = 23/310 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSF--ACCGRTD 57
R IALK Y G+NY+G IQ T+ +++AL K LI +F + CGRTD
Sbjct: 59 RFIALKFSYLGWNYNGLAIQKEPTPLPTVEGTIIEALNKCKLIPSLNPGNFNFSRCGRTD 118
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKV--VAWSPVPE 111
GVSA QV++LK+RS LT P E+ D N E Y+ +LN LP DIK+ ++ P P+
Sbjct: 119 KGVSALNQVISLKVRSNLT-PEEQLDPNLDSKEFDYINILNGILPSDIKIHEISLRP-PQ 176
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ ARF C R+YKY F Q GLDI+ M KAA+ G+HDFRN CK++ + N+ R +
Sbjct: 177 GFDARFSCTSRHYKYLFHQQGLDIELMQKAAKLYEGSHDFRNFCKIDGSKQISNYERTIL 236
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ Q D + + F++ FLWHQ+R ++++LFLVGQ E P I+ QL++
Sbjct: 237 KS---------QILDLGNGLYCFDLEGSAFLWHQVRNMVAILFLVGQKLESPGIVTQLMN 287
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDE--IEVSHVLRDLHEDWSLLSIKATML 289
I++ P +P++ M PL LY +F + W + L ++ W L++K +
Sbjct: 288 IQETPTRPLFDMGSDIPLILYDCKFPEMEWVKANKCAKYEKTLTSVYSQWIELNMKTQVA 347
Query: 290 GEMIKDTVRE 299
M + V +
Sbjct: 348 KFMYEKFVND 357
>gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila]
gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila SB210]
Length = 481
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 157/272 (57%), Gaps = 18/272 (6%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFC 64
ALK+ Y G NY G Q +DNT+ L KAL+KT LI++++ +F GRTD GVSA
Sbjct: 115 ALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKTTLIKNRDNCNFTRSGRTDKGVSALG 174
Query: 65 QVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNY 124
QV+ + +R+ + GE D+ + DI+++ S V ++ARFDC R Y
Sbjct: 175 QVIGITLRTSI-KIGENIDEID-------------DIRILGCSKVDPAFNARFDCQKRIY 220
Query: 125 KYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQF 184
KY+F + +DI M +AA +G HDFRN CK++V +N+ R++ + N
Sbjct: 221 KYYFFENQMDIQRMKEAANLFLGEHDFRNFCKIDVLQ-TLNYVRIIYQLDIEEVQANFGT 279
Query: 185 NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMV 244
D + I+ FLWHQIR +M++LFLVG+ E+P I+ +L+DI+K P KP Y M
Sbjct: 280 LDPRSKLYVATIQGSAFLWHQIRNMMAILFLVGRKQEEPSIVTELLDIQKNPSKPNYEMA 339
Query: 245 RGEPLNLYHTEFDNLTWHY--DEIEV-SHVLR 273
PL L+ ++N++++Y D+I++ H L+
Sbjct: 340 PDYPLVLFDCLYNNVSFNYSSDQIKIYEHYLQ 371
>gi|449304607|gb|EMD00614.1| hypothetical protein BAUCODRAFT_175867 [Baudoinia compniacensis
UAMH 10762]
Length = 607
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 175/350 (50%), Gaps = 94/350 (26%)
Query: 2 RPIALKILYQGFNYHGFQIQ---TSSDNTIAHHLLKALQKTCLI--------EDK---EK 47
R IALK Y G Y+GF+ T+ T+ L +AL+KT LI ED+ +
Sbjct: 99 RLIALKFAYLGGAYNGFEHHANNTTPLPTVEEELWRALRKTKLIFPEFGGRSEDEVCWDG 158
Query: 48 SSFACCGRTDSGVSAFCQVVTLKIRSKLTS----------PGEES--DD----------- 84
++ CGRTD GVSAF QVV L++RS PGE++ DD
Sbjct: 159 CEYSKCGRTDRGVSAFGQVVGLRVRSSRPKAEATVDVGSIPGEKAAEDDKMRDVESAGLS 218
Query: 85 ---------------------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFR 122
+ELPY+++LN+ LP DI+V+AW P P +SARF C R
Sbjct: 219 PITEQGAFEHANRLQDWHSVRDELPYMQLLNHVLPTDIRVLAWCPHPPPNFSARFSCKER 278
Query: 123 NYKYWF----------PQAG---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
Y+Y+F P++G LDI+AM KAA+ L G HDFRNLCK++ + NF R
Sbjct: 279 RYRYFFTNPAYATPPGPKSGEGWLDIEAMRKAARKLEGLHDFRNLCKVDPSKQITNFERR 338
Query: 170 VTHAGVTSAWQNVQFNDSHHNICE---------------------FNIRSQGFLWHQIRC 208
V HA + A + + DSH + F +R FLWHQ+R
Sbjct: 339 VFHADI-HAVSSPRLPDSHLALSNGDLLNGEMPPIAKLSEPALYYFEVRGSAFLWHQVRH 397
Query: 209 IMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
+++VLFLVGQG E+P +I L+DIE +PR+P Y M PL L+ F N
Sbjct: 398 LVAVLFLVGQGYEQPSLIDHLLDIEGHPRRPFYDMADDRPLVLWDCIFPN 447
>gi|66805521|ref|XP_636482.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
gi|60464862|gb|EAL62978.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
Length = 491
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 178/341 (52%), Gaps = 50/341 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A K+ Y G+ + GF Q S+ TI ++L+KA KT LI D + +++ GRTD GVS
Sbjct: 85 RHVAFKLSYVGWPFFGFAAQDCSEETIENYLIKAFLKTSLIPDIKTANYFKSGRTDKGVS 144
Query: 62 AFCQVVTLKIRSKLTS------PGEES--------------------------------- 82
A+ QV++L +RS L P ++S
Sbjct: 145 AYGQVISLYVRSNLKEGEGIIPPKDQSGGPISNRTKSNKTELTKNNDNEKARKGNKKSIE 204
Query: 83 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAA 142
DD ELPY+KMLN LP +I+++AW+PVP ++ARF L R YKY+F GLD++ M +A+
Sbjct: 205 DDEELPYIKMLNGVLPPEIRILAWAPVPFHFNARFSTLSRTYKYFFNPNGLDLNLMKEAS 264
Query: 143 QYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFL 202
+ +G H++ N CK++V V +F R++ + + + I+ FL
Sbjct: 265 KLYLGEHNYINFCKIDV--NVKSFMRVILQFDIEKV--------ENSELYVATIKGFAFL 314
Query: 203 WHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
WHQIRC+M+VLFL+GQ +I QL+D K KP Y M PL L+ +D++ +
Sbjct: 315 WHQIRCMMAVLFLIGQKKANISLITQLLDTNKTITKPPYEMASEVPLVLFDCGYDDIDFI 374
Query: 263 YDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRESKCT 303
Y+ + + ++ IK T + +I+ T++ ++ T
Sbjct: 375 YESSVQEKTVESMFGVYNDYLIK-TEVNRLIRSTLKNTEPT 414
>gi|429862259|gb|ELA36915.1| pseudouridylate synthase 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 500
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 176/361 (48%), Gaps = 70/361 (19%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G Y GF+ S+ TI L AL K CLI ED +F CC
Sbjct: 64 RFIALKLAYLGKRYGGFEYADSAALPTIEGELWNALTKACLIFPEDPAVVNFDCCEYSKC 123
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEE-------------------------------- 81
GRTD GVSAF QV+ L++RS P +
Sbjct: 124 GRTDRGVSAFGQVLGLRVRSSKPLPKPDPAPTEGDADTPMEGTAEKTETEEETKKKPEVE 183
Query: 82 -SDDNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQAGLDIDAMH 139
SD+ E+ Y+K LN LP DI+++AW P P +SARF C R +A I+AM
Sbjct: 184 WSDEKEIDYIKTLNRLLPDDIRILAWCPSPPPGFSARFSCEERQ------RATSTIEAMD 237
Query: 140 KAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT------SAWQNVQFNDSHHN--- 190
AAQ VG HDFRN CK++ G + NF R + AGV SA + + + +
Sbjct: 238 AAAQLFVGDHDFRNFCKVDGGKQITNFERRMFEAGVEEVKDVGSALPYLGLSSADGSKLP 297
Query: 191 -ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPL 249
+ FNIR FLWHQIR ++S+LFLVGQ EKPE++ +L+D+EK PRKP Y + PL
Sbjct: 298 KVYSFNIRGTAFLWHQIRHMVSILFLVGQRLEKPELVAELLDVEKTPRKPNYDLANDTPL 357
Query: 250 NLYHTEF------------DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTV 297
L++ F + L W Y E ++ L + + + A L +++ V
Sbjct: 358 VLWNCVFPGDRESRTQEGENALKWVYGEADIVENLWTYYRTKKMDELLANRLLDLVSGQV 417
Query: 298 R 298
+
Sbjct: 418 Q 418
>gi|159487841|ref|XP_001701931.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158281150|gb|EDP06906.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 287
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 154/282 (54%), Gaps = 30/282 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKS-----SFACCGRT 56
R +AL+++Y G+ + GF Q +++NTI L AL+KT LI + +++ CGRT
Sbjct: 11 RYVALELMYVGWAFQGFARQDNTENTIEGVLFSALRKTKLIPEAAAKPISELAYSRCGRT 70
Query: 57 DSGVSAFCQVVTLKIRS--------------KLTSPGEESDD------NELPYLKMLNNN 96
D GVSA QVV L++RS + P ES E Y +++N
Sbjct: 71 DRGVSALGQVVALQLRSCARPGGGGLGYHDPSMCGPARESLQCPSWCVQEFDYPRLINKA 130
Query: 97 LPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 156
LP +++++ W+PVP ++AR C R ++ + Q LDI AM AA + +G HDFRN CK
Sbjct: 131 LPPEVRILGWTPVPADFNAR--CGGRAGEWVYQQHSLDIQAMRTAAAHFIGEHDFRNFCK 188
Query: 157 MNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLV 216
+V V +FRR + V D+ H + +R FLWHQ+RC+ ++L +V
Sbjct: 189 PDVAT-VRSFRRRILSFTVEPV--TTSAADAAHQVYALTVRGTAFLWHQVRCMAAILLMV 245
Query: 217 GQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
G+G E P+++ +L+D+E PRKP Y M EPL LY F +
Sbjct: 246 GRGQEAPDVVARLLDVEACPRKPQYSMAPEEPLLLYACGFPS 287
>gi|393227193|gb|EJD34883.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 411
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 171/327 (52%), Gaps = 42/327 (12%)
Query: 2 RPIALKILYQGFNYHGF--QIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFAC----CGR 55
R IALK Y G+ Y+G Q + ++ T+ L +AL K LI D C CGR
Sbjct: 49 RKIALKFCYDGWEYNGLASQGEPTALPTVEAVLQEALYKKRLI-DPNAGPAGCDWDRCGR 107
Query: 56 TDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 115
TD GVSA QVV+L IR+ E PY+ MLN LP ++++AW+PV + +SA
Sbjct: 108 TDKGVSAASQVVSLWIRTA---------KKEFPYVSMLNRVLPPSLRILAWAPVADTFSA 158
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RF+C +R+YKY+F G+D+ M A L+G HDFRNLCK++ + NFRR + A +
Sbjct: 159 RFNCRYRHYKYFFSPDGIDLARMRAGAALLLGEHDFRNLCKLDAAKQISNFRRRIDRADI 218
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV----- 230
+ + + + F++ FLWHQ+R IM+VLF+VG G E E+++ L+
Sbjct: 219 S------EVEGTGGALYVFDLIGTAFLWHQVRHIMAVLFMVGSGAEPVELMRALLNVDGA 272
Query: 231 --DIEKYPRKPVYPMVRGEPLNLYHTEFD--NLTWHYDEIEVSHVLRDLHEDWSLLS--- 283
++E RKP Y M G PL L+ +D ++ W D E D +E LL
Sbjct: 273 DAEVETVDRKPEYQMADGLPLVLWDCAYDPADVPWVQDVDEDEDTNTDANEPSRLLDQMS 332
Query: 284 -------IKATMLGEMIKDTVRESKCT 303
I+ATM + DT R + T
Sbjct: 333 GIHTRSLIQATMHKHFL-DTARRYRIT 358
>gi|452844696|gb|EME46630.1| hypothetical protein DOTSEDRAFT_22677 [Dothistroma septosporum
NZE10]
Length = 667
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 167/322 (51%), Gaps = 65/322 (20%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI-------EDKEKSS-- 49
R IALK Y G NY+GF+ ++ T+ L KAL+KT LI + +E S
Sbjct: 65 RLIALKFAYLGGNYNGFEHHANNITPLPTVEEELWKALKKTRLIFPTLKPGQSEEGVSWE 124
Query: 50 ---FACCGRTDSGVSAFCQVVTLKIRSK--------------LTSPGEESDDNE------ 86
++ CGRTD GVSAF QV+ +++RS SP ++ NE
Sbjct: 125 GCDYSKCGRTDRGVSAFGQVIGIRVRSARPQVQPARAAAEDGADSPMPNAEQNEEPAIEF 184
Query: 87 ------LPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF----------- 128
LPY++++N LP DI+++AW P PE +SARF+C R Y+Y+F
Sbjct: 185 NSVCDELPYIQLINRVLPSDIRILAWCPHTPENFSARFNCKERRYRYFFTNPAFIPLPGS 244
Query: 129 --------PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW 179
P G L++ AM +AA+ G HDFRN CK++ + NF R + HAGV
Sbjct: 245 KGVAEDGSPDEGCLNVVAMEEAAKMYEGLHDFRNFCKVDPSKQISNFERRIFHAGVHEVN 304
Query: 180 QNVQFNDSHHN---ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
V+ + + F +R FLWHQ+R ++++LFLVGQG+EKP I+Q L+DI K P
Sbjct: 305 AGVKGESAASTSPKLYYFEVRGSAFLWHQVRHLVAILFLVGQGHEKPSIVQDLLDIHKTP 364
Query: 237 RKPVYPMVRGEPLNLYHTEFDN 258
+P Y M PL L+ F +
Sbjct: 365 ARPAYEMASDAPLVLWECIFPD 386
>gi|392587350|gb|EIW76684.1| pseudouridine synthase, partial [Coniophora puteana RWD-64-598 SS2]
Length = 493
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 167/339 (49%), Gaps = 70/339 (20%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IALK Y G+ Y+G + Q + T+ L KAL KT LI++ E + CGRT
Sbjct: 57 RKIALKFCYSGWEYNGLEFQKDATRLPTVEDVLFKALAKTKLIDEDGGFEACGWEKCGRT 116
Query: 57 DSGVSAFCQVVTLKIRSKL---------TSPGEESDDNE--------------------- 86
D GVSA QVV+L IRS SP E+S DN
Sbjct: 117 DIGVSAAGQVVSLWIRSAFEENRGARIPQSPPEDSSDNPNDISAVSAEDATEDVPPDFTS 176
Query: 87 -------------LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGL 133
L Y+ MLN LP ++V+AWSPV +SARF+C R+YKY+FP L
Sbjct: 177 LTVRRRPTNELRGLRYVTMLNRVLPPTVRVLAWSPVEPTFSARFNCRHRHYKYFFPSREL 236
Query: 134 DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICE 193
DI M +AA YLVG HDFRN+CK++ + NF+R + A + + Q + N+
Sbjct: 237 DISLMQQAADYLVGEHDFRNMCKLDPSKQITNFKRRILKAQIEAVGQE------NSNMYV 290
Query: 194 FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR-------------KPV 240
FN+ FL+HQ+R IM++LFLVG G E P ++ L++ + KPV
Sbjct: 291 FNLVGSAFLYHQVRHIMAILFLVGTGLEPPSVVLSLINTDADAAQELGLSADMLVDCKPV 350
Query: 241 YPMVRGEPLNLYHTEFD--NLTWHYD-EIEVSHVLRDLH 276
Y M PL L+ + ++ WH D E + + DLH
Sbjct: 351 YQMAEALPLMLWDCVYSDTDVDWHIDFEDKPAGAGADLH 389
>gi|428184071|gb|EKX52927.1| hypothetical protein GUITHDRAFT_161113 [Guillardia theta CCMP2712]
Length = 419
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 145/255 (56%), Gaps = 27/255 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IA+++ Y G+++ GF Q ++ TI HL AL KTCLI + SS++ C RTD GVS
Sbjct: 79 RHIAIELSYLGWDFKGFASQEDTNETIEGHLFAALSKTCLIPSRASSSYSRCARTDKGVS 138
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV+L+ ELPYL+M+N LP I+ +AW F C
Sbjct: 139 ALGQVVSLR---------------ELPYLQMINALLPPTIRAIAW----------FACSM 173
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R+YKY+F +A ++I+ M AA+ L G+HDFRN CK++ + F R + + +
Sbjct: 174 RSYKYFFVRADMNIEGMRAAAKLLEGSHDFRNFCKIDSSKPNLTFTRHIISFDIIPVVE- 232
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
Q +S +++ +I++ FLWHQ+R + ++LF VG+G + + ++DI + P+KP Y
Sbjct: 233 -QETESRYSVWSMDIKATAFLWHQVRAMAAILFAVGRGELEENFVSYMLDISRCPQKPHY 291
Query: 242 PMVRGEPLNLYHTEF 256
+ EPL LYH F
Sbjct: 292 NIASEEPLLLYHCHF 306
>gi|398409422|ref|XP_003856176.1| hypothetical protein MYCGRDRAFT_89199 [Zymoseptoria tritici IPO323]
gi|339476061|gb|EGP91152.1| hypothetical protein MYCGRDRAFT_89199 [Zymoseptoria tritici IPO323]
Length = 534
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 159/323 (49%), Gaps = 70/323 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI---------EDK---E 46
R IALK Y G Y+G++ T++ TI L +AL+K LI ED E
Sbjct: 60 RLIALKFAYLGGAYNGYEHHTNNTTPLPTIEEELWRALRKVRLIFPAFKPEKSEDDVEWE 119
Query: 47 KSSFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDN--------------------- 85
++ CGRTD GVSAF QVV +++RS P S +N
Sbjct: 120 GCEYSKCGRTDRGVSAFGQVVGIRVRSNRPKPSPRSAENAEVEEETAADAAKQDSTPDDT 179
Query: 86 ----------ELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWF------ 128
ELPY+++LN LP DI+++AW P P +SARF+C R Y+Y+F
Sbjct: 180 LEKPFDPVADELPYIQLLNRVLPSDIRILAWCPTPPSDFSARFNCKERRYRYFFTNPAYM 239
Query: 129 PQAG-------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
P G LDI AM +AA G HDFRN CK++ + NF R + HAG+
Sbjct: 240 PLPGSSASKRRGAEDGWLDISAMQQAAAKYEGLHDFRNFCKVDASKQIGNFERRIFHAGI 299
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
V+ + F +R FLWHQ+R +++V+FLVGQG E P ++ L+D+EK
Sbjct: 300 ----HKVEGTGEGPELYWFEVRGSAFLWHQVRHLVAVVFLVGQGYEDPSVVDYLLDVEKT 355
Query: 236 PRKPVYPMVRGEPLNLYHTEFDN 258
P KP Y M PL L+ F N
Sbjct: 356 PGKPAYEMASDVPLVLWDCIFPN 378
>gi|444317471|ref|XP_004179393.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
gi|387512434|emb|CCH59874.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
Length = 435
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 177/324 (54%), Gaps = 29/324 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIED--KEKSSFACCGRTD 57
R IALK Y G+NY+G IQ + T+ +L+A+ K L+ + +F+ CGRTD
Sbjct: 84 RFIALKFAYLGWNYNGLAIQKDYTPLPTVEGTILEAMNKCKLVPSMSPQDYNFSRCGRTD 143
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEES---DDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L +RS L++ + + D +E+ Y+ +LN LP DI++ V P P
Sbjct: 144 KGVSAMSQVISLNVRSNLSNEEQLNPLKDSDEIHYVDILNQVLPADIRISAVCLRP-PSG 202
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
++ARF C + + + + LDI+ M AA+ G HDFRN CK++ + N+ R +
Sbjct: 203 FNARFSCYKSSLQVFIRKKNLDIEKMKIAAKLYQGEHDFRNFCKLDGSKQITNYNRTIIS 262
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + + N + C F++ FLWHQ+RC+M++LFL+GQG E+P +I ++DI
Sbjct: 263 ADI------LPINGDFY--C-FDLVGSAFLWHQVRCMMAILFLIGQGLEEPSLINLMLDI 313
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWH------YDEIEVSHVLRDLHEDWSLLSIKA 286
EK PRKP+Y M PL LY +F + W Y I+ + L +S + A
Sbjct: 314 EKTPRKPIYDMASDVPLILYDCKFPEMNWSQPNLEDYKAIKYGKAISSLVLKYSTKATIA 373
Query: 287 TMLGEMIKDTVRE----SKCTMGD 306
+ +++ T +E ++ +GD
Sbjct: 374 QIFEDVLPTTTQEFPNKTRINLGD 397
>gi|384248918|gb|EIE22401.1| tRNA pseudouridine synthase, partial [Coccomyxa subellipsoidea
C-169]
Length = 277
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 153/276 (55%), Gaps = 41/276 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDK---EKSSFACCGRTDS 58
R +AL + Y G+ YHGF Q S+ T+ HL +A++KT LI + E ++ CGRTD
Sbjct: 11 RYVALGVFYVGWRYHGFASQADSEETVEGHLFRAMRKTKLIPEGLGWEGLGYSRCGRTDK 70
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESD------DNELPYLKMLNNNLPRDIKVVAWSPVPEK 112
GVSA QVV L +RS G ++D D E+ Y LN LP DI+V+ W+PVPE
Sbjct: 71 GVSALGQVVALWLRS-----GAKADEPALGVDEEMDYAVTLNRALPDDIRVLGWTPVPEG 125
Query: 113 YSARFDCLFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV- 170
+SAR Y+ Q G LD+ AM +AA + VG HDFRN CK++ + V +FRR +
Sbjct: 126 FSARCS------SYFIVQRGDLDLAAMQEAAGHFVGDHDFRNFCKVDAQH-VSSFRRTIL 178
Query: 171 ----THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
G+ A Q +C ++R FLWHQ+RC+ +VL LVG+G E P+I+
Sbjct: 179 DFRIVPVGLQGAAQ----------VCALHVRGTAFLWHQVRCMAAVLLLVGRGLESPDIV 228
Query: 227 QQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
++L+D+E P KP Y M P F N+ H
Sbjct: 229 RRLLDVEVTPLKPQYNMAPEVP----PAHFANVACH 260
>gi|336468412|gb|EGO56575.1| hypothetical protein NEUTE1DRAFT_83903 [Neurospora tetrasperma FGSC
2508]
gi|350289332|gb|EGZ70557.1| pseudouridine synthase [Neurospora tetrasperma FGSC 2509]
Length = 540
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 156/308 (50%), Gaps = 58/308 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R IALK Y G NY+GF+ Q+S+ +I L KAL K+CLI E ++ F C
Sbjct: 59 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKC 118
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEK 112
GRTD G +A P + +E+PY ++LN LP DI+++AW+P +P
Sbjct: 119 GRTDRGAAA---------EVDHQKPEWDPIADEIPYCRVLNRLLPPDIRIMAWAPDLPPN 169
Query: 113 YSARFDCLFRNYKYWFPQAG-------------------------LDIDAMHKAAQYLVG 147
+SARF C R Y+Y+F Q LDID M KAA+ G
Sbjct: 170 FSARFSCRERQYRYFFTQPAFAPMPSTLEPPLASSGQKSGGKQGWLDIDMMRKAAKMFEG 229
Query: 148 THDFRNLCKMNVGNGVVNFRRLV---------------THAGVTSAWQNVQFNDSHHNIC 192
HDFRN CK++ G + NF R + + G+ + SH +
Sbjct: 230 VHDFRNFCKIDPGKQITNFSRRIFESDIVEVKDLESDLPYLGLPEFQPPAGSDGSHPKVY 289
Query: 193 EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
F++R FLWHQIR +++VLFLVGQG E P I+QQL+D+EK PRKP Y M PL L+
Sbjct: 290 YFHVRGSAFLWHQIRHMVAVLFLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLW 349
Query: 253 HTEFDNLT 260
F L+
Sbjct: 350 DCIFPKLS 357
>gi|302899152|ref|XP_003047991.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728923|gb|EEU42278.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 530
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 159/328 (48%), Gaps = 73/328 (22%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G NY GF+ Q ++ +I L AL K CLI +D+ F CC
Sbjct: 55 RFIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPKDERVVDFECCEYSKC 114
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSP----------------------GEESD-------- 83
GRTD GVSAF QV+ L++RS P GEE D
Sbjct: 115 GRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGDAMVVDEPTGENGEEEDYIETSSFD 174
Query: 84 --DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWF--------PQAG 132
+EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F P AG
Sbjct: 175 PIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPTAG 234
Query: 133 ------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV----------- 175
LDI+AM AA+ G HDFRN CK++ G + NF R + A +
Sbjct: 235 GAKNGWLDIEAMRDAAKRYEGEHDFRNFCKIDPGKQITNFVRNIFEADIKEVRDVSSALP 294
Query: 176 -------TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V + H + F +R FLWHQIR ++ VLFLVGQ EKPE+I
Sbjct: 295 YLSGSQYAPAGGVVDKDAVHPKVYMFQVRGSAFLWHQIRHMVGVLFLVGQRLEKPEVIST 354
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
L+D+ K P KP Y M PL L+ F
Sbjct: 355 LLDVAKSPCKPNYVMADEVPLVLWDCIF 382
>gi|400597275|gb|EJP65010.1| pseudouridine synthase 3 [Beauveria bassiana ARSEF 2860]
Length = 776
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 169/336 (50%), Gaps = 73/336 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLI--EDKEKSSF-----ACCGR 55
IALK+ Y G NY GF+ Q + TI L AL K CLI ED++ F + CGR
Sbjct: 71 IALKLAYLGKNYGGFEFQAVGNQPTIEEELWNALTKACLIFPEDEKIVDFNICEYSKCGR 130
Query: 56 TDSGVSAFCQVVTLKIRS--------KLTSPGEESDD------------------NELPY 89
TD GVSAF QV+ +++RS K T G ++D +E+PY
Sbjct: 131 TDRGVSAFGQVIGIRVRSNKPLPKEAKQTVDGVATEDQTEGQEQEAKERPFDPIADEIPY 190
Query: 90 LKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQAG---------------- 132
+LN LP +I+++AW P P +SARF C R Y+Y+F Q
Sbjct: 191 PMVLNRLLPPEIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFAPEPSDDGGGGAKSG 250
Query: 133 -LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL------------------VTHA 173
LDI AM AA+ G DFRN+CK++ + N+ R VT A
Sbjct: 251 WLDIAAMRDAAKRFEGEQDFRNVCKVDPAKLITNWSRTIFESDIVEVQDAATALPYVTGA 310
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
G + A +++ + F++R FLWHQIR +++VLFLVGQG EKP I+ +L+D++
Sbjct: 311 GFSPA--HLEKGGKFPRVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLEKPSIVTELLDVD 368
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVS 269
KYPRKP Y M PL L+ F +L DE +S
Sbjct: 369 KYPRKPGYAMADEVPLVLWDCVFPDLA-RADEAPLS 403
>gi|358389001|gb|EHK26594.1| hypothetical protein TRIVIDRAFT_134370, partial [Trichoderma virens
Gv29-8]
Length = 462
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 166/331 (50%), Gaps = 70/331 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G NY GF+ Q + +I L AL K CLI ED++ F CC
Sbjct: 19 RYIALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTKACLIFPEDEKLVDFDCCEYSKC 78
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK- 112
GRTD GVSAF Q K T P ++ D E+PY +LN LP++I+++AW P P
Sbjct: 79 GRTDRGVSAFGQQEENKKPEVQTKPFDDIRD-EIPYPHVLNRLLPKEIRILAWCPSPPPD 137
Query: 113 YSARFDCLFRNYKYWFPQAG-------------------------LDIDAMHKAAQYLVG 147
+SARF C R Y+Y+F Q LDI+AM AA+ G
Sbjct: 138 FSARFSCRERQYRYFFTQPAFAPTPSHIEGVPMKQRTRKIMKPGWLDIEAMRDAAKRYEG 197
Query: 148 THDFRNLCKMNVGNGVVNFRRLVTHAGVTS----------------AWQNVQFNDS---- 187
HDFRNLCK++ + NF+R + + + A ++V +DS
Sbjct: 198 EHDFRNLCKIDPAKQITNFKRRMFESDIVEVKDAASALPYLKAAGFAPEDVALDDSPSGG 257
Query: 188 -HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRG 246
+ + F++R FLWHQIR +++VLFLVGQG E+P ++ +L+D+EK PR+P Y M
Sbjct: 258 VYPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLEQPSLVSELLDVEKNPRRPNYVMADE 317
Query: 247 EPLNLY--------------HTEFDNLTWHY 263
PL L+ H + D L W Y
Sbjct: 318 VPLVLWDCIFPSDLSVSTASHRKDDALQWVY 348
>gi|320591696|gb|EFX04135.1| pseudouridylate synthase 3 [Grosmannia clavigera kw1407]
Length = 522
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 149/308 (48%), Gaps = 68/308 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSS----------FAC 52
IALK+ Y G Y GF+ Q S TI L KAL K CL+ +S ++
Sbjct: 60 IALKLAYLGKRYGGFEYQPSGALPTIEEELWKALTKACLVFPAPGASADEVDLVRCEYSK 119
Query: 53 CGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEK 112
CGRTD GVSAF QVV L++RS + Y K+LN LP DI+V+AW P
Sbjct: 120 CGRTDRGVSAFGQVVALRVRS----------NKRAVYAKVLNRLLPPDIRVLAWCATPPA 169
Query: 113 -YSARFDCLFRNYKYWF-------------------------PQAGLDIDAMHKAAQYLV 146
+SARF C R Y+Y+F P LDIDAM AA V
Sbjct: 170 DFSARFSCRERQYRYFFTQPAYFTEDGSRPGPTSSAGSASQPPDGWLDIDAMRDAATRFV 229
Query: 147 GTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHN---------------I 191
G HDFRN CK++ + NF R + AG+T + D H + +
Sbjct: 230 GLHDFRNFCKVDPSKQITNFERRIFAAGIT------EVADVHSSLRCLSSSASSVSFPRV 283
Query: 192 CEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNL 251
F++R FLWHQIR +++VLFLVGQG E +++ QL+ + P +P YPM PL L
Sbjct: 284 YSFDVRGSAFLWHQIRHMVAVLFLVGQGREPADVVSQLLGVAAQPGRPNYPMADETPLVL 343
Query: 252 YHTEFDNL 259
+ F L
Sbjct: 344 WDCIFPPL 351
>gi|403215491|emb|CCK69990.1| hypothetical protein KNAG_0D02400 [Kazachstania naganishii CBS
8797]
Length = 418
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 179/326 (54%), Gaps = 32/326 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDKEK--SSFACCGRTD 57
R IAL+ Y G+ Y+G +Q ++ T+ +L+ + K L+ E +F+ CGRTD
Sbjct: 96 RFIALRFAYLGWKYNGLALQKEPTALPTVEETILEVMNKCKLVPSMEPLDYNFSRCGRTD 155
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE----SDDNELPYLKMLNNNLPRDIKV--VAWSPVPE 111
GVSA QV++L +RS L SP E+ +D EL Y+ M+N+ LP DI+V V P P
Sbjct: 156 KGVSAMNQVISLTVRSNL-SPEEQRDPANDHQELQYVHMINHLLPDDIRVSAVCLRP-PA 213
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ AR C R+Y+Y F LD++ M +AA+ G HDFRN CK++ + N+RR +
Sbjct: 214 DFDARHSCKHRHYRYLFKAEQLDLEKMREAAKLYEGEHDFRNFCKIDGSKQITNYRRRII 273
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ ++ N+ + C F++ FLWHQ+RC+M+ LFLVGQG EKP I+ L++
Sbjct: 274 SGDI------IRVNEDFY--C-FDLVGTAFLWHQVRCMMACLFLVGQGLEKPSIVTDLMN 324
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSLLSIK 285
I+ P+KP+Y M PL LY +F ++ W Y I+ L D+ L K
Sbjct: 325 IDLMPQKPLYDMASDVPLLLYDCKFPDMEWIKCNLHDYKAIKYGKAANALALDYQL---K 381
Query: 286 ATMLGEMIKDTVRESKCTM-GDLDIN 310
A+M + + T+ S M G + +N
Sbjct: 382 ASM-SAIYQQTLPSSNVDMQGKIRVN 406
>gi|367054792|ref|XP_003657774.1| hypothetical protein THITE_75432 [Thielavia terrestris NRRL 8126]
gi|347005040|gb|AEO71438.1| hypothetical protein THITE_75432 [Thielavia terrestris NRRL 8126]
Length = 614
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 162/343 (47%), Gaps = 85/343 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R +ALK+ Y G Y GF+ Q S T+ L +AL +TCLI E +K F C
Sbjct: 100 RLVALKLAYLGRRYGGFEHQPGSAVPTVEEELWRALVRTCLIWPEQPDKVDFGPWEYSKC 159
Query: 54 GRTDSGVSAFCQVVTLKIRSKL-------------------------------------- 75
GRTD GVSAF QV+ +++RS
Sbjct: 160 GRTDRGVSAFGQVIAIRLRSNRPLDAAGKKGGDDKGKEGEAGDVEMGERGEAGEMAGAAD 219
Query: 76 --TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG 132
P + +E+ Y ++LN LP DI+V+AW+P +P +SARF C R Y+Y+F Q
Sbjct: 220 GGAKPAWDPIADEINYPRVLNRLLPPDIRVLAWAPTLPPGFSARFSCWERQYRYFFTQPA 279
Query: 133 -------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
LDIDAM +AA+ G HDFRN CK++ + F+R V A
Sbjct: 280 FTPLPASLDPDGTRGREGWLDIDAMRRAAKLFEGVHDFRNFCKVDGAKQITTFKRRVFEA 339
Query: 174 ------GVTSAWQNVQFND-----------SHHNICEFNIRSQGFLWHQIRCIMSVLFLV 216
G SA + D +H + F++R FLWHQIR ++++LFLV
Sbjct: 340 DVVEVEGTGSALPYLALPDFRPEKLAEQGGTHPKVYYFHVRGSAFLWHQIRHMVAILFLV 399
Query: 217 GQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
GQG EKP II L+D+EK PRKP Y + PL L+ F +
Sbjct: 400 GQGLEKPSIITDLLDVEKNPRKPNYTLAAEAPLVLWDCIFPKV 442
>gi|171689408|ref|XP_001909644.1| hypothetical protein [Podospora anserina S mat+]
gi|170944666|emb|CAP70777.1| unnamed protein product [Podospora anserina S mat+]
Length = 635
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 164/323 (50%), Gaps = 72/323 (22%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R IALK+ Y G NY GF+ S+ +I L KAL K CLI D K FA C
Sbjct: 131 RLIALKLSYLGKNYGGFEHSGYSNVPSIEEELWKALVKGCLITPADPSKIDFAPFEYSKC 190
Query: 54 GRTDSGVSAFCQVVTLKIR-----SKLTSPGEE-------SDDNELP------------- 88
GRTD GVSAF QV+++++R SK P EE + N P
Sbjct: 191 GRTDRGVSAFGQVISIRVRSNRPPSKSEQPAEEDVVMEGTPEQNNTPQLPGKKQQQNPQK 250
Query: 89 ----------YLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----- 132
Y K+LN LP DIKV+AW+P +PE +SARF C R Y+Y+F
Sbjct: 251 EWEDIVDEINYPKVLNRLLPPDIKVLAWAPTLPEGFSARFSCYERQYRYFFTNPSMAPTL 310
Query: 133 ---------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA---------- 173
LDI AM KAA+Y G HDFRN CK++ G + +F+R +
Sbjct: 311 LAPGEKSGWLDIAAMKKAAKYFEGLHDFRNFCKVDGGKQITSFQRRIFECDIEEVEGQDL 370
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
GV + W + + F++R FLWHQIR +++++F VGQG E+PE++++L+D+E
Sbjct: 371 GVVNFWG----GEKKGKVYYFHVRGSAFLWHQIRHMVAIVFNVGQGLERPEVVRELLDVE 426
Query: 234 KYPRKPVYPMVRGEPLNLYHTEF 256
+ RKP Y M PL L+ F
Sbjct: 427 RNGRKPGYIMAEEVPLVLWDCVF 449
>gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans]
gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans CBS 6340]
Length = 443
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 175/324 (54%), Gaps = 29/324 (8%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIED--KEKSSFACCGRTD 57
R +A K Y G+NY+G IQ T+ +L+A+ L+ + +F+ CGRTD
Sbjct: 87 RFVAFKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMNACKLVPSMVPQDYNFSRCGRTD 146
Query: 58 SGVSAFCQVVTLKIRSKLT---SPGEESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L +RS LT EE+D E+ Y+ +LN LP DI++ V P P
Sbjct: 147 KGVSAMNQVISLHVRSNLTREEQQDEENDGREIDYIHILNQLLPDDIRISAVCLRP-PTN 205
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C +R+Y+Y F + GLDI M +AA+ G HDFRN CK++ + N++R +
Sbjct: 206 FDARFSCQYRHYRYLFHKDGLDIKKMEEAARMYEGEHDFRNFCKLDGSKQINNYKRNIER 265
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + S +++ C ++ FLWHQ+RC+M+ LFL+GQG E +++ L+D+
Sbjct: 266 SRIISLSEDI--------YC-LDLIGSAFLWHQVRCMMANLFLIGQGLEDTTLLKDLMDV 316
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSLLSIKA 286
+ +KP+Y M PL L+ +F + W ++ ++ + L D++L S A
Sbjct: 317 ARVKQKPIYDMASDIPLILFDCKFPEMEWKTVDSNNFKSLQSDRRVYALSLDYNLKSTVA 376
Query: 287 TMLGEMIKDTVRE----SKCTMGD 306
+ E + T E ++ +GD
Sbjct: 377 NIFRETLCVTTSEIQGRTRINLGD 400
>gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger]
Length = 517
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 155/305 (50%), Gaps = 62/305 (20%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIE----DKEKSSFACCG 54
R IALK Y G Y+G + + TI + KAL+KT + + + ++ G
Sbjct: 107 RFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALRKTRETKPYYINWDGCEYSKAG 166
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSP-VPEKY 113
RTD GVSAF QV+ +++R NELPY+ MLN LP DI+V+AW P PE +
Sbjct: 167 RTDRGVSAFGQVIGIRVR------------NELPYVSMLNKVLPEDIRVLAWCPRPPEGF 214
Query: 114 SARFDCLFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVG 147
ARF C R+YKY+F Q LDI+AM KAA+Y G
Sbjct: 215 DARFSCGERHYKYFFTQPAFSPTPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEG 274
Query: 148 THDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIR 207
THDFRN CK++V + +F R + + Q + F++ FLWHQ+R
Sbjct: 275 THDFRNFCKLDVTKQIESFYRDIFQSSAAPLPTAAQ-------VYVFHLEGSAFLWHQVR 327
Query: 208 CIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYH---------TEFDN 258
+++VLFLVGQG E+P I+Q L+D+ K PRKP Y M PL L+ + D+
Sbjct: 328 HMVNVLFLVGQGLEEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDCIYPDKKSGSRADS 387
Query: 259 LTWHY 263
L W Y
Sbjct: 388 LDWVY 392
>gi|367000836|ref|XP_003685153.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
gi|357523451|emb|CCE62719.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
Length = 434
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 179/327 (54%), Gaps = 35/327 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIE--DKEKSSFACCGRTD 57
R +ALK Y G++Y+G +Q TI LL+A++K I + + F+ CGRTD
Sbjct: 87 RHVALKFCYLGWDYNGLALQKDKTPLPTIEGILLEAMKKCKFIPSMNPKDFKFSRCGRTD 146
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVAWSPVPEK- 112
GVSA Q+++L +RS+L P E+ D N E+ Y +LN LP I++ A P K
Sbjct: 147 KGVSALNQIISLDMRSEL-PPAEQVDANFDHKEINYTAILNQILPPAIRITAVCLNPPKD 205
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF+C+ R+YKY+F LDI M +AA++ G +DFRN CK++ + N+ R +
Sbjct: 206 FDARFNCISRHYKYFFKLDNLDITLMREAAKHFEGENDFRNFCKLDGSKQIKNYERTIFS 265
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
++ +++ C F+I + FLWHQ+R ++++LFLVGQ E I++ L+D+
Sbjct: 266 FDISKVKEDI--------YC-FDIIASAFLWHQVRYMVAILFLVGQKLEPSSIVKDLLDV 316
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW------HYDEIEVSHVLRDLHEDWSLLSIKA 286
KYPRKP+Y M PL LY + ++ W Y I+ L + D+ L IKA
Sbjct: 317 NKYPRKPIYDMAADFPLVLYDCNYSDMKWIKSNINDYKAIKFRKSLEAI--DYQ-LQIKA 373
Query: 287 TM-------LGEMIKDTVRESKCTMGD 306
T+ L E+ +T +++ GD
Sbjct: 374 TIASIFLEELKEVDNNTSNKTRICTGD 400
>gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 154/288 (53%), Gaps = 39/288 (13%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFAC----CGR 55
R IALK Y G+ Y G FQ+ + T+ L AL K LI D+E C CGR
Sbjct: 50 RKIALKFSYSGWEYGGLAFQLGPTPLPTVEGVLFDALAKARLI-DQEAGFEGCGWEKCGR 108
Query: 56 TDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 115
TD GVSA QVV+L + + P E D YL +LN LP I+V+AWSPV K+SA
Sbjct: 109 TDRGVSAAGQVVSL--WATTSKPTFEHD-----YLSILNRLLPDTIRVLAWSPVAPKFSA 161
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RF CL+R+YKY+F GLDI M +AA LVG HDFRNLCK++ + FRR V +
Sbjct: 162 RFSCLYRHYKYFFSPLGLDIPRMQQAALRLVGDHDFRNLCKLDPQKQITIFRRKV----I 217
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK- 234
T+ + + ++ + FN+ FL+HQ+R IM++LFLVG G E P ++ L+++E
Sbjct: 218 TAEIEPLSLAENGEGVYVFNLVGTAFLYHQVRHIMAILFLVGTGLEPPSVVSSLLNVEAG 277
Query: 235 -------------YPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVS 269
RKP Y M PL L+ Y E EVS
Sbjct: 278 VEPTKDGDSPYEVVDRKPEYQMADALPLMLWEC-------GYPETEVS 318
>gi|310794568|gb|EFQ30029.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001]
Length = 570
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 161/337 (47%), Gaps = 82/337 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G Y GF+ S+ TI L AL K CLI ED + +F CC
Sbjct: 92 RFIALKLAYLGKRYGGFEYAASASLPTIEGELWNALTKACLIFPEDPDVVNFDCCEYSKC 151
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEES------------------------------- 82
GRTD GVSAF QV+ L++RS P +
Sbjct: 152 GRTDRGVSAFGQVIGLRVRSNKPLPKKPEEEAAAAEAEEGDTAMAGTAEEEEKKKRQEQT 211
Query: 83 -----------DD--NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWF 128
DD +E+ Y+K+LN LP DI++ AW P P +SARF C R Y+Y+F
Sbjct: 212 QKQKKKPEKEWDDINDEIQYVKVLNRLLPDDIRITAWCPSPPPDFSARFSCEERQYRYFF 271
Query: 129 PQAG-------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
Q LDI+AM++AAQ VG HDFRN CK++ + NF R
Sbjct: 272 TQPAFTPTAATSDGTPSGLREGYLDIEAMNEAAQRFVGDHDFRNFCKVDGSKQITNFERR 331
Query: 170 VTHAGVTSA--------WQNVQFNDSHH--NICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ A V + D + FNIR FLWHQIR ++++LFLVGQ
Sbjct: 332 MFEASVGEVRDVGSALPYLGCSAADGGQLPKVYSFNIRGTAFLWHQIRHMVTILFLVGQR 391
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
E+PE++ +L+D+EK PRKP Y + PL L++ F
Sbjct: 392 LERPELVTELLDVEKSPRKPNYDLAHETPLVLWNCVF 428
>gi|336366370|gb|EGN94717.1| hypothetical protein SERLA73DRAFT_114183 [Serpula lacrymans var.
lacrymans S7.3]
Length = 464
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 151/286 (52%), Gaps = 35/286 (12%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSFAC----CGR 55
R IA+K Y G+ Y+G Q T+ L A KT L+ D +K C CGR
Sbjct: 58 RKIAVKFCYSGWEYNGLAFQNGPTPLPTVEEVLFNAFAKTRLV-DPDKGLDGCGWERCGR 116
Query: 56 TDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 115
TD GVSA QVV+L + P E +EL Y+ +LN LP I+V+AWSP+ +SA
Sbjct: 117 TDRGVSAAGQVVSLW--PSMRQPSREETRSELRYVSILNRVLPPTIRVLAWSPISSTFSA 174
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RF+C R+YKY+F LD+ M +AA LVG HDFRNLCK++ + NF R V A +
Sbjct: 175 RFNCQSRHYKYFFSPQELDLGLMQQAADRLVGEHDFRNLCKLDPAKQITNFNRRVLLAKI 234
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK- 234
+ S H +C F++R FL+HQ+R IM++LFLVG G E P I+ L+++ K
Sbjct: 235 SPI--------SDH-LCVFDLRGTAFLYHQVRHIMAILFLVGTGLEHPSIVSTLLNVGKE 285
Query: 235 --------------YPRKPVYPMVRGEPLNLYHTEF--DNLTWHYD 264
RKP Y M G PL L+ + ++ W D
Sbjct: 286 TNSPSELDNSPLEIVDRKPEYQMADGLPLMLWDCAYSDSDVQWQTD 331
>gi|207345658|gb|EDZ72410.1| YFL001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 315
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 130/218 (59%), Gaps = 15/218 (6%)
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--V 104
F+ CGRTD GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V
Sbjct: 17 FSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAV 76
Query: 105 AWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
P P + ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ +
Sbjct: 77 CLRP-PPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQIT 135
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
NF+R + + + S C F++ FLWHQ+RC+M++LFLVGQ E PE
Sbjct: 136 NFKRTIISSKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPE 186
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
I+ +L DIEK P++PVY M PL LY +F + W
Sbjct: 187 IVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 224
>gi|358396017|gb|EHK45404.1| hypothetical protein TRIATDRAFT_284330 [Trichoderma atroviride IMI
206040]
Length = 655
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 164/348 (47%), Gaps = 93/348 (26%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G N+ GF+ Q + I L AL K CLI ED+ +F CC
Sbjct: 156 RFIALKLAYLGKNFGGFEFQAQGNQPAIEEELWNALTKACLIFPEDENVVNFDCCEYSKC 215
Query: 54 GRTDSGVSAFCQVVTLKIRS------------------------------------KLTS 77
GRTD GVSAF QV+ L++RS K +
Sbjct: 216 GRTDRGVSAFGQVIGLRVRSNRPLPKKQPEMDEEADLAKEEEGHEAAGDGQTKKQSKPKA 275
Query: 78 PGEESDD--NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQAG-- 132
P + DD +E+PY +LN LP++I+++AW P P +SARF C R Y+Y+F Q
Sbjct: 276 PPKPFDDIRDEIPYPHVLNRLLPKEIRILAWCPAPPPDFSARFSCRERQYRYFFTQPAFA 335
Query: 133 --------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
LDI+AM AA+ G HDFRNLCK++ + NF
Sbjct: 336 PMPSLIEDSAAAKKGDQDEKLMKPGWLDIEAMRDAAKRYEGEHDFRNLCKVDPAKQITNF 395
Query: 167 RR------------------LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRC 208
+R + AG ++ ++ + F++R FLWHQIR
Sbjct: 396 KRRMFESDIVEVKDAASALPYLKAAGFAPENLDLSSGEAFPKVYYFHVRGSAFLWHQIRH 455
Query: 209 IMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+++VLFLVGQG EKP +I +L+DIEK PR+P Y M PL L+ F
Sbjct: 456 MVAVLFLVGQGLEKPSLISELLDIEKNPRRPNYVMADEVPLVLWDCIF 503
>gi|323348774|gb|EGA83014.1| Deg1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 315
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 130/218 (59%), Gaps = 15/218 (6%)
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--V 104
F+ CGRTD GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V
Sbjct: 17 FSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAV 76
Query: 105 AWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
P P + ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ +
Sbjct: 77 CLRP-PPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQIT 135
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
NF+R + + + S C F++ FLWHQ+RC+M++LFLVGQ E PE
Sbjct: 136 NFKRTIISSKILPL--------SETFYC-FDLIGSAFLWHQVRCMMAILFLVGQSLEVPE 186
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
I+ +L DIEK P++PVY M PL LY +F + W
Sbjct: 187 IVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQ 224
>gi|336379040|gb|EGO20196.1| hypothetical protein SERLADRAFT_363593 [Serpula lacrymans var.
lacrymans S7.9]
Length = 444
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 153/288 (53%), Gaps = 35/288 (12%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSFAC----CGR 55
R IA+K Y G+ Y+G Q T+ L A KT L+ D +K C CGR
Sbjct: 58 RKIAVKFCYSGWEYNGLAFQNGPTPLPTVEEVLFNAFAKTRLV-DPDKGLDGCGWERCGR 116
Query: 56 TDSGVSAFCQVVTLKIRSKLTSP--GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKY 113
TD GVSA QVV+L +RS L + +EL Y+ +LN LP I+V+AWSP+ +
Sbjct: 117 TDRGVSAAGQVVSLWVRSALDENRLKDAETRSELRYVSILNRVLPPTIRVLAWSPISSTF 176
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
SARF+C R+YKY+F LD+ M +AA LVG HDFRNLCK++ + NF R V A
Sbjct: 177 SARFNCQSRHYKYFFSPQELDLGLMQQAADRLVGEHDFRNLCKLDPAKQITNFNRRVLLA 236
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
++ S H +C F++R FL+HQ+R IM++LFLVG G E P I+ L+++
Sbjct: 237 KISPI--------SDH-LCVFDLRGTAFLYHQVRHIMAILFLVGTGLEHPSIVSTLLNVG 287
Query: 234 K---------------YPRKPVYPMVRGEPLNLYHTEF--DNLTWHYD 264
K RKP Y M G PL L+ + ++ W D
Sbjct: 288 KETNSPSELDNSPLEIVDRKPEYQMADGLPLMLWDCAYSDSDVQWQTD 335
>gi|452983301|gb|EME83059.1| hypothetical protein MYCFIDRAFT_136942 [Pseudocercospora fijiensis
CIRAD86]
Length = 526
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 168/339 (49%), Gaps = 77/339 (22%)
Query: 2 RPIALKILYQGFNYHGFQIQ---TSSDNTIAHHLLKALQKTCLIEDK------------- 45
R IALK Y G NY+GF+ T+ TI L KAL KT LI +
Sbjct: 60 RLIALKFAYLGGNYNGFEHHNNNTTPLPTIEEELWKALNKTKLIFPEYKVGESGGGDVSW 119
Query: 46 EKSSFACCGRTDSGVSAFCQVVTLKIRSK----------------LTSPGEESDD----- 84
E ++ CGRTD GVSAF QV+ L++RS S G +++
Sbjct: 120 EGVEYSKCGRTDRGVSAFGQVIGLRVRSSRPKEKEKVEVNVVVEEEESVGSDAEVEVEEK 179
Query: 85 --------NELPYLKMLNNNLPRDIKVVAW-SPVPEKYSARFDCLFRNYKYWF------- 128
+ELPY+++LN LP DI+V+AW + PE +SARF+C R Y+Y+F
Sbjct: 180 EKEWDHIRDELPYIQLLNRVLPPDIRVLAWCADPPEDFSARFNCKERRYRYFFTNPAFVP 239
Query: 129 ------------PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
P G LDI+AM +AA+ G HDFRNLCK++ + +F R + HAG+
Sbjct: 240 LPGCKHKSENERPGEGWLDIEAMDQAAKKYEGLHDFRNLCKVDPSKQIADFSRRIFHAGI 299
Query: 176 --TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ + S + F +R FLWHQ+R +++VLFLVGQG E P I+ +L+DI
Sbjct: 300 HEVQSQGGSVVDPSSPKLFYFEVRGSAFLWHQVRHLVAVLFLVGQGYESPSIVDELLDIG 359
Query: 234 KYPRKPVYPMVRGEPLNLYHTEF---------DNLTWHY 263
K P KP Y M PL L+ F D L W Y
Sbjct: 360 KTPAKPHYEMASDIPLVLWDCIFPSAEEPSYTDALDWIY 398
>gi|346324635|gb|EGX94232.1| pseudouridylate synthase 3 [Cordyceps militaris CM01]
Length = 547
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 161/333 (48%), Gaps = 72/333 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSS-DNTIAHHLLKALQKTCLI-EDKEK------SSFACCGR 55
IALK+ Y G NY GF+ Q +I L AL K CLI + EK ++ CGR
Sbjct: 68 IALKLAYLGKNYGGFEFQAEGHQPSIEEELWIALTKACLIFPENEKIVDFNICEYSKCGR 127
Query: 56 TDSGVSAFCQVVTLKIRS--------KLTSPGEESDD-----------------NELPYL 90
TD GVSAF QV+++++RS K T G D +E+PY
Sbjct: 128 TDKGVSAFGQVISIRVRSNRPLPKEPKPTVEGAAGQDTEQQEPEEEEKPFDPIADEIPYP 187
Query: 91 KMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQ------------------A 131
+LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 188 MVLNRLLPPDIRILAWCPSPPPNFSARFSCRERQYRYFFTQPVFSPEPSYGTGTGTTHPG 247
Query: 132 GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL------------------VTHA 173
LDIDAM AA+ G DFRNLCK++ + N+ R VT A
Sbjct: 248 WLDIDAMRDAAKRFEGDQDFRNLCKIDPAKLITNWSRTIFESDIVEVRDAASALPYVTAA 307
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
G + + S + F++R FLWHQIR +++VLFLVG EKP I+ +L+D+
Sbjct: 308 GFAPS--ALVGTSSFPKVYYFHVRGSAFLWHQIRHMVAVLFLVGLRLEKPSIVSELLDVN 365
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEI 266
KYPRKP Y M PL L+ F +LT D +
Sbjct: 366 KYPRKPGYTMADEVPLVLWDCLFPDLTQADDAV 398
>gi|342871954|gb|EGU74369.1| hypothetical protein FOXB_15103 [Fusarium oxysporum Fo5176]
Length = 546
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 166/331 (50%), Gaps = 73/331 (22%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G NY GF+ Q ++ ++I L AL K CLI ED+ F CC
Sbjct: 69 RYIALKLAYLGKNYGGFEFQAMANASSIEEELWNALTKACLIFPEDERIVDFDCCEYSKC 128
Query: 54 GRTDSGVSAFCQVVTLKIRS---------KLTSPGEES---------------------D 83
GRTD GVSAF QV+ L++RS +L+ GE D
Sbjct: 129 GRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGEAMVVDEQAGENAEEEPVEETPSFD 188
Query: 84 D--NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWF--------PQAG 132
D +EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F P AG
Sbjct: 189 DIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPSAG 248
Query: 133 ------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT---------- 176
LDI+AM +AA+ G HDFRN CK++ G + NF R + A +
Sbjct: 249 GARNGWLDIEAMREAAKRYEGEHDFRNFCKIDPGKQITNFVRTIYEADIEEVKDVSSTLP 308
Query: 177 --SAWQNVQF----NDS--HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
S Q V ND + + FN+R FLWHQIR +++VLFL GQ E P+++
Sbjct: 309 YLSGSQYVPAGGLPNDGTVYPKVYSFNVRGSAFLWHQIRHMVAVLFLAGQKLETPDVVTT 368
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
L+D++ P KP Y M PL L+ F L
Sbjct: 369 LLDVKANPCKPNYVMADEVPLVLWDCIFPGL 399
>gi|408390631|gb|EKJ70023.1| hypothetical protein FPSE_09868 [Fusarium pseudograminearum CS3096]
Length = 538
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 166/328 (50%), Gaps = 73/328 (22%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G NY GF+ Q ++ ++I L AL K CLI ED+ F CC
Sbjct: 61 RYIALKLAYLGKNYGGFEFQAMANASSIEEELWNALTKACLIFPEDERIVDFDCCEYSKC 120
Query: 54 GRTDSGVSAFCQVVTLKIRS---------KLTSPGE------ESDDN------------- 85
GRTD GVSAF QV+ L++RS +L+ GE +S DN
Sbjct: 121 GRTDKGVSAFGQVIGLRVRSARPVPKKRRRLSEAGEAMVVDEQSGDNAEEEVEDNTPPFD 180
Query: 86 ----ELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWF--------PQAG 132
EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F P AG
Sbjct: 181 PIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPSAG 240
Query: 133 ------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG------VTSAW- 179
LDI+AM AA+ G HDFRN CK++ G + NF R + A V+SA
Sbjct: 241 GSRNGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNFERTIYEADIEEVRDVSSALP 300
Query: 180 --QNVQF---------NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ QF + + + F +R FLWHQIR +++VLFL GQ E P+++
Sbjct: 301 YLSSPQFAPAEGLPTDDAKYPKVYCFKVRGSAFLWHQIRHMVAVLFLAGQRLETPDVVTM 360
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
++D+ K P KP Y M PL L+ F
Sbjct: 361 MLDVAKNPCKPNYVMADEVPLVLWDCIF 388
>gi|116199417|ref|XP_001225520.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51]
gi|88179143|gb|EAQ86611.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51]
Length = 553
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 158/302 (52%), Gaps = 51/302 (16%)
Query: 2 RPIALKILYQGFNYHGFQIQTS-SDNTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R IALK+ Y G Y GF+ Q S +T+ L +AL K+CLI +D + FA C
Sbjct: 108 RLIALKLAYLGKRYGGFEYQAGVSVSTVEEELWRALAKSCLIWPDDPSRVDFAPWEYSKC 167
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEESDD---NELPYLKMLNNNLPRDIKVVAWSP-V 109
GRTD G V + R + G+ + D +E+ Y ++LN LP DI+V+AW+P +
Sbjct: 168 GRTDKGAG----VEVERGRGRGEEDGKRAWDPVADEINYPRILNRLLPPDIRVLAWAPTL 223
Query: 110 PEKYSARFDCLFRNYKYWFPQAG-------------------LDIDAMHKAAQYLVGTHD 150
PE +SARF C R Y+Y+F Q LDIDAM KAA+ G HD
Sbjct: 224 PEDFSARFSCRERQYRYFFTQPAFAPLPISVDPERKKGSEGWLDIDAMRKAAKLFEGVHD 283
Query: 151 FRNLCKMNVGNGVVNFRRLVTHAGVTSAW----------------QNVQFNDSHHNICEF 194
FRN CK++ + NF+R + A V +++ ++ + F
Sbjct: 284 FRNFCKVDGVKQISNFKRRMFEADVVEVEDAGSALPYLAQQGFKPESLVGGTTYPKVYYF 343
Query: 195 NIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHT 254
++R FLWHQIR ++++LFLVGQG EKP I+ L+D+EK PRKP Y M PL L+
Sbjct: 344 HVRGSAFLWHQIRHMVAILFLVGQGLEKPSIVTDLLDVEKNPRKPNYAMAEEVPLVLWDC 403
Query: 255 EF 256
F
Sbjct: 404 IF 405
>gi|341038783|gb|EGS23775.1| pseudouridylate synthase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 590
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 182/367 (49%), Gaps = 96/367 (26%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSF-----ACC 53
R IALK+ Y G NY GF+ Q S++ TI L KAL + CLI E+ +K F + C
Sbjct: 78 RVIALKLAYLGKNYGGFEYQGSANVPTIEEELWKALCRACLIWPENPDKVDFTPWEYSKC 137
Query: 54 GRTDSGVSAFCQVVTLKIRSK------------------LTSPGEESDD----------- 84
GRTD GVSAF QV+T+K+RS + + GE++
Sbjct: 138 GRTDKGVSAFGQVITIKVRSNRPVSKKEEEVKEDVEMTDVPAEGEQTKGKKKGDDKKQKV 197
Query: 85 ---------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF------ 128
+E+ Y ++LN LP DI+++AW+P +P +SAR+ C R Y+Y+F
Sbjct: 198 IKSEWDPIADEINYPRVLNRLLPPDIRILAWAPTLPPNFSARYSCYERQYRYFFTNPAFS 257
Query: 129 --------------------PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
P+ G LDIDAM AA+ G HDFRN CK++ + NF
Sbjct: 258 PLPPSLDPGLASSDGNDPNKPREGWLDIDAMRMAAKLFEGVHDFRNFCKVDGAKQISNFT 317
Query: 168 RLVTHAG---VTSAWQNVQF--------------NDSHHNICEFNIRSQGFLWHQIRCIM 210
R V A V A ++ F +D + + F++R FLWHQIR ++
Sbjct: 318 RRVFEADIVEVDDATSSLPFLTQRPDLLPSGFDRSDRYPKVYYFHVRGSAFLWHQIRHMV 377
Query: 211 SVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSH 270
SVLF +GQG EKP ++ +L+D + +PR+P Y M PL L+ F L DE ++S
Sbjct: 378 SVLFAIGQGLEKPSLVTELLDADSHPRRPNYAMADEVPLVLWDCIFPKL----DE-DMSR 432
Query: 271 VLRDLHE 277
+ ++H+
Sbjct: 433 KMANVHD 439
>gi|46138645|ref|XP_391013.1| hypothetical protein FG10837.1 [Gibberella zeae PH-1]
Length = 538
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 162/328 (49%), Gaps = 73/328 (22%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G NY GF+ Q ++ +I L AL K CLI ED+ F CC
Sbjct: 61 RYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPEDERIVDFDCCEYSKC 120
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPG-----------------------EESDDN----- 85
GRTD GVSAF QV+ L++RS P EE +DN
Sbjct: 121 GRTDKGVSAFGQVIGLRVRSARPVPKKRRRMSEAGEAMVVDEQSGENAEEEVEDNTPPFD 180
Query: 86 ----ELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWF--------PQAG 132
EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F P AG
Sbjct: 181 PIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPSAG 240
Query: 133 ------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG------VTSAW- 179
LDI+AM AA+ G HDFRN CK++ G + NF R + A V+SA
Sbjct: 241 GARNGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNFERTIYEADIEEVQDVSSALP 300
Query: 180 --QNVQF---------NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ QF + + + F +R FLWHQIR +++VLFL GQ E P+++
Sbjct: 301 YLSSPQFAPAEGLPTDDAKYPKVYCFKVRGSAFLWHQIRHMVAVLFLAGQRLETPDVVTT 360
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
++D+ K P KP Y M PL L+ F
Sbjct: 361 MLDVAKNPCKPNYVMADEVPLVLWDCIF 388
>gi|322698560|gb|EFY90329.1| putative pseudouridine synthase 3 [Metarhizium acridum CQMa 102]
Length = 564
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 163/343 (47%), Gaps = 84/343 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G NY GF+ Q + +I L AL + CLI ED+ F CC
Sbjct: 79 RFIALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTRACLIFPEDERIVQFNCCEYSKC 138
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSP--GEESD---------------------------- 83
GRTD GVSAF QV+ LK+RS P G ++D
Sbjct: 139 GRTDRGVSAFGQVIGLKVRSNRPLPKNGSKTDVAAAEDIAMAEAGPQGGKQAEEDVEVQE 198
Query: 84 --------DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQAG-- 132
+EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 199 EEKPFDDIHDELCYPRILNRLLPDDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFA 258
Query: 133 -------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
LDIDAM AA+ G HDFRN CK++ + NFRR + +
Sbjct: 259 PDPASLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFRRRIFES 318
Query: 174 GV--------------TSAWQ--NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
+ TS + +Q + + + F++R FLWHQIR ++++LFLVG
Sbjct: 319 DIVEVQDASSVMPYLQTSGFSPPGLQGSGPYPKVYYFHVRGSAFLWHQIRHMVAILFLVG 378
Query: 218 QGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLT 260
QG E P ++ +L+D K P +P Y M PL L+ F +L+
Sbjct: 379 QGLESPTVVSELLDTAKNPGRPSYVMADEVPLVLWDCIFPDLS 421
>gi|440469549|gb|ELQ38657.1| hypothetical protein OOU_Y34scaffold00533g41 [Magnaporthe oryzae
Y34]
gi|440485616|gb|ELQ65557.1| hypothetical protein OOW_P131scaffold00480g7 [Magnaporthe oryzae
P131]
Length = 625
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 165/362 (45%), Gaps = 103/362 (28%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI-EDKEKSS---------F 50
R IALK+ Y G NY+G + Q S I L KAL KTCLI D E+ +
Sbjct: 97 RYIALKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCDY 156
Query: 51 ACCGRTDSGVSAFCQVVTLKI------RSKLTSP--------GEESD------------- 83
+ CGRTD GVSAF QVV L++ R K S GE +
Sbjct: 157 SKCGRTDRGVSAFGQVVALRVKSNKPLRKKKQSAVQLDQDGSGEAASASTGAVDAAGAQV 216
Query: 84 ------------------------DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFD 118
D E+ Y KMLN LP DI+V+AW P P +SAR
Sbjct: 217 VPEDSQPGQEDEQEGEEDDAPYPADKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHS 276
Query: 119 CLFRNYKYWFPQ-------------------------AGLDIDAMHKAAQYLVGTHDFRN 153
C R Y+Y+F Q LD+DAM +AA+ G HDFRN
Sbjct: 277 CHERQYRYFFTQPIFSPVPARLDGVMGYKEPGSTHKDGYLDLDAMREAARLFEGEHDFRN 336
Query: 154 LCKMNVGNGVVNFRRLVTHAG---VTSAWQNVQFND------------SHHNICEFNIRS 198
CK++ + NF+RL+ A V A ++ + D + + F++R
Sbjct: 337 FCKIDASKQISNFKRLIREASIVEVPEAASSLPYLDTPDFRPSGEDSQARPKVYYFHVRG 396
Query: 199 QGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
FLWHQIR +++VLFLVGQ EKP I+ +L+DIEKYP KP YPM PL L+ +
Sbjct: 397 SAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDCLYGG 456
Query: 259 LT 260
T
Sbjct: 457 RT 458
>gi|389623455|ref|XP_003709381.1| tRNA-pseudouridine synthase [Magnaporthe oryzae 70-15]
gi|351648910|gb|EHA56769.1| tRNA-pseudouridine synthase [Magnaporthe oryzae 70-15]
Length = 694
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 165/362 (45%), Gaps = 103/362 (28%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI-EDKEKSS---------F 50
R IALK+ Y G NY+G + Q S I L KAL KTCLI D E+ +
Sbjct: 166 RYIALKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCDY 225
Query: 51 ACCGRTDSGVSAFCQVVTLKI------RSKLTSP--------GEESD------------- 83
+ CGRTD GVSAF QVV L++ R K S GE +
Sbjct: 226 SKCGRTDRGVSAFGQVVALRVKSNKPLRKKKQSAVQLDQDGSGEAASASTGAVDAAGAQV 285
Query: 84 ------------------------DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFD 118
D E+ Y KMLN LP DI+V+AW P P +SAR
Sbjct: 286 VPEDSQPGQEDEQEGEEDDAPYPADKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHS 345
Query: 119 CLFRNYKYWFPQ-------------------------AGLDIDAMHKAAQYLVGTHDFRN 153
C R Y+Y+F Q LD+DAM +AA+ G HDFRN
Sbjct: 346 CHERQYRYFFTQPIFSPVPARLDGVMGYKEPGSTHKDGYLDLDAMREAARLFEGEHDFRN 405
Query: 154 LCKMNVGNGVVNFRRLVTHAG---VTSAWQNVQFND------------SHHNICEFNIRS 198
CK++ + NF+RL+ A V A ++ + D + + F++R
Sbjct: 406 FCKIDASKQISNFKRLIREASIVEVPEAASSLPYLDTPDFRPSGEDSQARPKVYYFHVRG 465
Query: 199 QGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
FLWHQIR +++VLFLVGQ EKP I+ +L+DIEKYP KP YPM PL L+ +
Sbjct: 466 SAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDCLYGG 525
Query: 259 LT 260
T
Sbjct: 526 RT 527
>gi|345563397|gb|EGX46398.1| hypothetical protein AOL_s00109g156 [Arthrobotrys oligospora ATCC
24927]
Length = 574
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/394 (31%), Positives = 180/394 (45%), Gaps = 103/394 (26%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDK------------- 45
R IALK Y G Y G + SD T+ L +AL K L+ K
Sbjct: 74 RLIALKFAYIGGPYQGLEYHFGSDTPLPTVEEKLFEALLKARLVPPKTYYHPDGSIDTTQ 133
Query: 46 -------------------EKSSFACCGRTDSGVSAFCQVVTLKIRSKLT---------- 76
+ + CGRTD GVSAF QVV +++RS
Sbjct: 134 VFTSGSNTGIEDIGKWIDLDSWEYTKCGRTDRGVSAFGQVVGVRVRSNRPKSKKEEILGE 193
Query: 77 -----------------SPGEESDD-------NELPYLKMLNNNLPRDIKVVAWSP-VPE 111
P E D+ +ELPY+ +LN LP I+V+AW P PE
Sbjct: 194 NALVEDIDDSSTPKGPIEPAENDDETLDFEDKDELPYVTILNRLLPSTIRVLAWCPNPPE 253
Query: 112 KYSARFDCLFRNYKYWF-----------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 160
+SARF+C R Y Y+F P LDIDAM AA+Y G HDFRNLCK++
Sbjct: 254 NFSARFNCQARTYHYFFTNPPAPHNPGEPPRVLDIDAMKTAAKYYEGPHDFRNLCKIDAS 313
Query: 161 NGVVNFRRLVTHA------GVTSAWQNVQFNDSHHNICE-------FNIRSQGFLWHQIR 207
+ NF+R V A GVT A+ +++ ++ + E F + FLWHQ+R
Sbjct: 314 KQITNFKRRVEEADIVKVGGVTPAF-SLEPCETSQRMLERRPEMYYFKLTGSAFLWHQVR 372
Query: 208 CIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD--NLTWHYDE 265
++++LFLVGQ EKP+++++L+D++ P KP Y M PL L+ FD + W Y E
Sbjct: 373 HMVAILFLVGQKLEKPDVVKELLDVQNMPTKPFYNMADDRPLVLWDCLFDENEVKWVYPE 432
Query: 266 IEVSH------VLRDLHEDWSLLSIKATMLGEMI 293
+ + V+ L E W ++ A + G ++
Sbjct: 433 LNRAKPSSREDVIGSLWELWHNSNMDAMLSGGLL 466
>gi|119490947|ref|XP_001263134.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181]
gi|119411294|gb|EAW21237.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181]
Length = 610
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 164/369 (44%), Gaps = 110/369 (29%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKSSF---------- 50
IALK Y G Y+G + + TI L KA+++T LI K +F
Sbjct: 116 IALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPRELK 175
Query: 51 -------AC----CGRTDSGVSAFCQVVTLKIRS--------------KLTSPGEESDD- 84
C GRTD GVSAF QV+ +++RS ++TS G +DD
Sbjct: 176 PYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAEATSDVEMTS-GAHADDT 234
Query: 85 -----NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG------ 132
+E+PY+ MLN LP DI+++AW P P + ARF C R YKY+F Q
Sbjct: 235 WDDIADEIPYISMLNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPTPG 294
Query: 133 ----------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
LDIDAM +AA+Y G HDFRN CK++ + NF R++
Sbjct: 295 PLGFAMRGSGDKNASAQLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERII 354
Query: 171 THAGV---------------------------TSAWQNVQFNDSHHNICEFNIRSQGFLW 203
HAG+ T A N + + FN+ FLW
Sbjct: 355 YHAGIELLDPKNHPLGYVNQPGFQALQDAPAGTDAESGTITNSAAAKVYVFNLHGSAFLW 414
Query: 204 HQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF------- 256
HQ+R ++S+LFLVGQG E P I++ L+D+ K P KP Y M PL L+ F
Sbjct: 415 HQVRHMVSILFLVGQGLEPPTIVRDLLDVSKNPCKPTYEMASDAPLVLWDCIFPDEASGS 474
Query: 257 --DNLTWHY 263
D L W Y
Sbjct: 475 RKDALNWIY 483
>gi|440298431|gb|ELP91067.1| tRNA pseudouridine synthase, putative [Entamoeba invadens IP1]
Length = 364
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 159/313 (50%), Gaps = 40/313 (12%)
Query: 2 RPIALKILYQGFNYHGFQIQT------------SSDNTIAHHLLKALQKTCLIEDKEKSS 49
R IA+ + Y G Y GF T +DNTI ++L ++L KT LI KE
Sbjct: 36 RHIAVHLSYVGIGYCGFASSTLNEANLTNYQKLQNDNTIEYYLFQSLFKTKLINSKEDCK 95
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSP--GEESDDNELPYLKMLNNNLPRDIKVVAWS 107
++ CGRTD VS F QV+ L +RS L + D + Y +M+N+ LP DI+ + W
Sbjct: 96 YSRCGRTDKDVSGFGQVIDLWVRSSLKTDIIDYTQHDGDYDYCRMINSTLPVDIRCLGWC 155
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
VP+ +++RF CL R Y Y+F +G D++AM +AAQY VG HDF N CK + N +
Sbjct: 156 GVPDDFNSRFSCLSRTYHYYFDPSGYDVEAMKQAAQYFVGEHDFTNFCKKDPAVDHCNRK 215
Query: 168 RL------VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
L VTH + F ++ FLWHQ+R ++ LFLVG G +
Sbjct: 216 VLSFEIEPVTH------------------LSRFVVKGTAFLWHQVRYMVGALFLVGSGTD 257
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSL 281
P+ I+ L+D+ + + + PL L+ E+ + + D V +L DL + +
Sbjct: 258 -PKTIKDLLDVNNFTKPDFFKYAPAYPLVLFKCEYKEVDFVCDSSNVK-LLGDLVDSYKE 315
Query: 282 LSIKATMLGEMIK 294
L IK M ++++
Sbjct: 316 LEIKCLMRKQLVE 328
>gi|67484392|ref|XP_657416.1| pseudouridine synthase [Entamoeba histolytica HM-1:IMSS]
gi|56474668|gb|EAL52030.1| pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449706882|gb|EMD46641.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 366
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 161/322 (50%), Gaps = 29/322 (9%)
Query: 2 RPIALKILYQGFNYHGFQI------------QTSSDNTIAHHLLKALQKTCLIEDKEKSS 49
R IA+++ Y G +Y+G Q +D TI + L KAL KT LI++ +
Sbjct: 36 RHIAIRLTYIGIDYNGIQCTLLNDVTDATFDSVINDGTIEYQLFKALFKTRLIQNTKDCK 95
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPG--EESDDNELPYLKMLNNNLPRDIKVVAWS 107
+ CGRTD GVSAF QVV L +RS L + EL Y +MLN LP DI+ + W
Sbjct: 96 YNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPTDIRCLGWC 155
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
VP+ +++RF C R Y Y+F + D+ M +AAQ +G HDF N CK +
Sbjct: 156 GVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAAQLFLGEHDFTNFCKKDPA------- 208
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
V+H V+ D + F + F+WHQ+R ++ LF +GQG PE I+
Sbjct: 209 --VSHCVRRVNSFEVEETDG---LSRFVVCGTAFVWHQVRYMVGALFAIGQG-ANPESIK 262
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
QL+D+E Y + + PL LY ++D + + D V +L D+ E W + IK
Sbjct: 263 QLLDVEHYTKPNYFKYAPAYPLVLYECKYDGVEFLCDNSNVK-LLGDIVEAWKEIEIKGM 321
Query: 288 MLGEMIKDTVRESKCTMGDLDI 309
M ++K E K + G L +
Sbjct: 322 MRKSLMK-LAMEQKMSDGKLTV 342
>gi|353237530|emb|CCA69501.1| related to DEG1-pseudouridine synthase [Piriformospora indica DSM
11827]
Length = 423
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 46/307 (14%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFAC----CGR 55
R IALK Y G++Y+G +Q+ + T+ L AL K LI D+E C CGR
Sbjct: 51 RKIALKFCYHGWDYNGLAYQVTPTPLPTVEGVLFDALCKARLI-DREAGFEGCDWSRCGR 109
Query: 56 TDSGVSAFCQVVTLKIR--------------SKLTSPGEESDDNELP-----YLKMLNNN 96
TD GVS+ QVV L++R +++T P + S +E P Y+++LN
Sbjct: 110 TDRGVSSAGQVVALRMRCSLRPVETVQPFEEAEVTPPTQPSTKSEPPELEVKYIQVLNRI 169
Query: 97 LPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-----PQAGLDIDAMHKAAQYLVGTHDF 151
LP I+V+AW+PV + +SARF+C +R+YKY+F P + L+ID M AA LVG HDF
Sbjct: 170 LPPSIRVLAWAPVDDTFSARFNCRYRHYKYFFQPLNPPASPLNIDKMRNAASLLVGEHDF 229
Query: 152 RNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMS 211
RN CK++ + + R V A ++ + + F++ FLWHQ+R IM
Sbjct: 230 RNFCKLDGSKQIERYDRRVVSATISRLTSPTIQGEKPMYV--FDLVGSAFLWHQVRHIMG 287
Query: 212 VLFLVGQGNEKPEIIQQLVDIEKY-PR----------KPVYPMVRGEPLNLYHTEFD--N 258
VLFLVGQG E I+ L++ + P +P+Y M G PL L+ FD +
Sbjct: 288 VLFLVGQGLEDASIVNALLNTDSSRPSFDPSLPLLECRPLYDMAEGLPLVLWECGFDQKD 347
Query: 259 LTWHYDE 265
+ W DE
Sbjct: 348 IRWRTDE 354
>gi|322709808|gb|EFZ01383.1| putative pseudouridine synthase 3 [Metarhizium anisopliae ARSEF 23]
Length = 564
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 160/343 (46%), Gaps = 84/343 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G NY GF+ Q + +I L AL + CLI ED+ F CC
Sbjct: 79 RFIALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTRACLIFPEDERIVQFDCCEYSKC 138
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSPGEES------------------------------- 82
GRTD GVSAF QV+ LK+RS P + +
Sbjct: 139 GRTDRGVSAFGQVIGLKVRSNRPLPKKRAETDVAAAEDIALADADPQGVKQAEEEVEAQE 198
Query: 83 -----DD--NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQAG-- 132
DD +EL Y ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 199 EDKPFDDIHDELCYPRILNRLLPDDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFA 258
Query: 133 -------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
LDIDAM AA+ G HDFRN CK++ + NF R + +
Sbjct: 259 PDPTSLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFHRRIFES 318
Query: 174 GVTS----------------AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
+ + ++ + + + F++R FLWHQIR +++VLFLVG
Sbjct: 319 DIVEVQGAGSVMPYLQTPGFSSPGLEGSGPYPKVYYFHVRGSAFLWHQIRHMVAVLFLVG 378
Query: 218 QGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLT 260
QG E P +I +L+D K P +P Y M PL L+ F +L+
Sbjct: 379 QGLESPTVISELLDTAKNPGRPSYVMADEVPLVLWDCIFPDLS 421
>gi|407035846|gb|EKE37872.1| pseudouridine synthase, putative [Entamoeba nuttalli P19]
Length = 366
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 160/322 (49%), Gaps = 29/322 (9%)
Query: 2 RPIALKILYQGFNYHGFQI------------QTSSDNTIAHHLLKALQKTCLIEDKEKSS 49
R IA+ + Y G +Y+G Q +D TI + L KAL KT LI++ +
Sbjct: 36 RHIAIHLTYIGIDYNGIQCTLLNDVTDATFDSVVNDGTIEYQLFKALFKTRLIQNTKDCK 95
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPG--EESDDNELPYLKMLNNNLPRDIKVVAWS 107
+ CGRTD GVSAF QVV L +RS L + EL Y +MLN LP DI+ + W
Sbjct: 96 YNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPTDIRCLGWC 155
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
VP+ +++RF C R Y Y+F + D+ M +AAQ +G HDF N CK +
Sbjct: 156 GVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAAQLFLGEHDFTNFCKKDPA------- 208
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
V+H V+ D + F + F+WHQ+R ++ LF +GQG PE I+
Sbjct: 209 --VSHCVRRVNSFEVEETDG---LSRFVVCGTAFVWHQVRYMVGALFAIGQG-ANPESIK 262
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
QL+D+E Y + + PL LY ++D + + D V +L D+ E W + IK
Sbjct: 263 QLLDVEHYTKPNYFKYAPAYPLVLYECKYDGVEFLCDNSNVK-LLGDIVEAWKEIEIKGM 321
Query: 288 MLGEMIKDTVRESKCTMGDLDI 309
M ++K E K + G L +
Sbjct: 322 MRKSLMK-LAMEQKMSDGKLTV 342
>gi|453086473|gb|EMF14515.1| pseudouridine synthase [Mycosphaerella populorum SO2202]
Length = 546
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 167/335 (49%), Gaps = 77/335 (22%)
Query: 2 RPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLIEDKEKSS--------- 49
R IALK Y G NY+GF+ T+ TI L +A++K LI ++K
Sbjct: 59 RLIALKFAYLGANYNGFEHHANNTTPLPTIEEELWRAMRKVKLIFPEQKPGQSEEDVCWD 118
Query: 50 ---FACCGRTDSGVSAFCQVVTLKIRSKL-----------TSPGEESDD----------- 84
++ CGRTD GVSAF QV+ +++RS S G ES
Sbjct: 119 GIEYSKCGRTDRGVSAFGQVIGVRVRSARIKEKKQVLPNEVSAGAESQGADTIMPDVSQD 178
Query: 85 -----------------NELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKY 126
+ELPY++++N LP DI+++AW P P + +SARF+C R Y+Y
Sbjct: 179 ANAAAAPPAEKEFDPIRDELPYIQLINRVLPPDIRILAWCPEPGDGFSARFNCKERRYRY 238
Query: 127 WF------------------PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
+F P G LDI+AM+ AA+ G HDFRNLCK++ + N+
Sbjct: 239 FFTNPAYAPLPGGKPWENGKPGEGFLDIEAMNVAAKKYEGLHDFRNLCKVDPSKQITNWE 298
Query: 168 RLVTHAGVTSAWQNVQF---NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + HAG+ + N + F +R FLWHQ+R ++++LFLVGQG+E+P
Sbjct: 299 RRIFHAGIHEVGPHSSAAVSNGDTPKLYYFEVRGSAFLWHQVRHLVAILFLVGQGHEQPS 358
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
++ L++++K P KP Y M PL L+ F ++
Sbjct: 359 VVDDLLNVQKTPGKPHYEMASDVPLVLWDCIFPSV 393
>gi|169604989|ref|XP_001795915.1| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15]
gi|160706683|gb|EAT86574.2| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15]
Length = 475
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 172/373 (46%), Gaps = 100/373 (26%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIE--------------- 43
R IALK Y G Y+GF+ ++ TI L KAL KT LI
Sbjct: 72 RLIALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTRLINPIPTTGDTADYNKAD 131
Query: 44 -------DKEKS-------SFACCGRTDSGVSAFCQVVTLKIRSKLTSPGE-----ESDD 84
D+E + ++ CGRTD GVSAF QV+ +++RS P + ES +
Sbjct: 132 RKTFATWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNRPLPKQPAKEPESQE 191
Query: 85 N---------------------------ELPYLKMLNNNLPRDIKVVAWSP-VPEKYSAR 116
N ELPY+++LN LP DI+V AW P PE +SAR
Sbjct: 192 NPPAAEDELDILDSEPDAATKHFNEVTDELPYIQLLNRVLPPDIRVYAWCPNPPENFSAR 251
Query: 117 FDCLFRNYKYWF------PQAG----------------LDIDAMHKAAQYLVGTHDFRNL 154
F C R YKY+F P G LDI AM A + L+G HDFRN+
Sbjct: 252 FSCKERRYKYFFTNPCFAPVPGSAGTYHTPSSPMREGTLDIAAMQLACESLIGLHDFRNM 311
Query: 155 CKMNVGNGVVNFRRLVTHAGVTSAWQ-NVQFNDSHHNICE--------FNIRSQGFLWHQ 205
CK++ + NF+R + +AG+ +V SH I F + FLWHQ
Sbjct: 312 CKIDASKQLTNFKRRIFYAGIEEVSPLSVPSYLSHGAIAPPDQPKMYAFVLHGSAFLWHQ 371
Query: 206 IRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDE 265
+R I+++LFL+GQ E P ++QQL+DIE P +P Y M PL L+ F H DE
Sbjct: 372 VRSIVAILFLIGQRLEPPSLVQQLLDIETNPTRPKYEMASDAPLVLWDCIFP----HADE 427
Query: 266 IEVSHVLRDLHED 278
++ S ++D
Sbjct: 428 VQTSEERETGYQD 440
>gi|125544113|gb|EAY90252.1| hypothetical protein OsI_11824 [Oryza sativa Indica Group]
Length = 403
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 29/293 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R IALKI+Y G ++GF + ++ T+ + KAL++ L+ +++S ++ CGRTD GV
Sbjct: 92 RLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGV 151
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
SA QV++L +RS + +D K+ + ARF CL
Sbjct: 152 SATGQVISLFLRSNI-----------------------KDAKLDVLDNKSGDFLARFSCL 188
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R YKY F + L+I M KAA +G HD+RN CKM+ N V N+RR +T +++ Q
Sbjct: 189 GREYKYLFWKGDLNISEMQKAALKFIGEHDYRNFCKMDAAN-VSNYRRHITDFNISAYDQ 247
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
+++ + I+ FLWHQ+RC+++VLFL+GQG E P I+ L+DI K PRKP
Sbjct: 248 RSNYDE----LWAITIKGSAFLWHQVRCMVAVLFLIGQGLESPCIVDSLLDITKTPRKPQ 303
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
Y M PL L FD + + ++ L +++ ++A + E +
Sbjct: 304 YKMASEIPLILRSCLFDEVNFMCSSEASQALIEHLKDEYHQYMLQAAIFCEAL 356
>gi|67525425|ref|XP_660774.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4]
gi|40744565|gb|EAA63741.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4]
Length = 625
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 167/372 (44%), Gaps = 112/372 (30%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI-------EDK-------- 45
IALK Y G Y G + ++ TI + KAL +T LI ED
Sbjct: 128 IALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGDEDVPDRKAKRK 187
Query: 46 ---------EKSSFACCGRTDSGVSAFCQVVTLKIRS-----KLTSPGEESDD------- 84
E ++ GRTD GVSAF QV+ LK+RS K P + S+D
Sbjct: 188 EIEPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETTRE 247
Query: 85 -----------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG 132
+ELPY+ +LN LP DI+V+AW P PE + AR+ C R+YKY+F Q
Sbjct: 248 TVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQPA 307
Query: 133 -------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
LDIDAM +AA+Y G HDFRN CK++ + NF
Sbjct: 308 FSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENFE 367
Query: 168 RLVTHAGVT--------------SAWQNVQFNDSHH-------------NICEFNIRSQG 200
R++ A + + + + D+ + FN++
Sbjct: 368 RIIYRADIELLDPRNSPLGYVNRPEFSALNYPDTDSLTQKPAGSVPPGCQVYVFNLQGSA 427
Query: 201 FLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---- 256
FLWHQ+R ++ +LFLVGQG E P ++++L+D+ K PRKP+Y M PL L++ F
Sbjct: 428 FLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVFPAKD 487
Query: 257 -----DNLTWHY 263
D L W Y
Sbjct: 488 SETREDALEWVY 499
>gi|259485874|tpe|CBF83268.1| TPA: pseudouridylate synthase 3 (AFU_orthologue; AFUA_3G13350)
[Aspergillus nidulans FGSC A4]
Length = 664
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 167/372 (44%), Gaps = 112/372 (30%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI-------EDK-------- 45
IALK Y G Y G + ++ TI + KAL +T LI ED
Sbjct: 167 IALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGDEDVPDRKAKRK 226
Query: 46 ---------EKSSFACCGRTDSGVSAFCQVVTLKIRS-----KLTSPGEESDD------- 84
E ++ GRTD GVSAF QV+ LK+RS K P + S+D
Sbjct: 227 EIEPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETTRE 286
Query: 85 -----------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG 132
+ELPY+ +LN LP DI+V+AW P PE + AR+ C R+YKY+F Q
Sbjct: 287 TVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQPA 346
Query: 133 -------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
LDIDAM +AA+Y G HDFRN CK++ + NF
Sbjct: 347 FSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENFE 406
Query: 168 RLVTHAGVT--------------SAWQNVQFNDSHH-------------NICEFNIRSQG 200
R++ A + + + + D+ + FN++
Sbjct: 407 RIIYRADIELLDPRNSPLGYVNRPEFSALNYPDTDSLTQKPAGSVPPGCQVYVFNLQGSA 466
Query: 201 FLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---- 256
FLWHQ+R ++ +LFLVGQG E P ++++L+D+ K PRKP+Y M PL L++ F
Sbjct: 467 FLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVFPAKD 526
Query: 257 -----DNLTWHY 263
D L W Y
Sbjct: 527 SETREDALEWVY 538
>gi|222625021|gb|EEE59153.1| hypothetical protein OsJ_11064 [Oryza sativa Japonica Group]
Length = 403
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 29/293 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R IALKI+Y G ++GF + ++ T+ + KAL++ L+ +++S ++ CGRTD GV
Sbjct: 92 RLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGV 151
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
SA QV++L +RS + +D K+ + ARF CL
Sbjct: 152 SATGQVISLFLRSNI-----------------------KDAKLDVLDNKSGDFLARFSCL 188
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R YKY F + L+I M KAA +G HD+RN CKM+ N V N+RR +T +++ Q
Sbjct: 189 GREYKYLFWKGDLNISEMQKAALKFIGEHDYRNFCKMDAAN-VSNYRRHITDFNISAYDQ 247
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
+++ + I+ FLWHQ+RC+++VLFL+GQG E P I+ L+DI K PRKP
Sbjct: 248 RSNYDE----LWAITIKGSAFLWHQVRCMVAVLFLIGQGLETPCIVDSLLDITKTPRKPQ 303
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
Y M PL L FD + + ++ L +++ ++A + E +
Sbjct: 304 YKMASEIPLILRSCLFDEVNFMCSSEASQALIEHLKDEYHQYMLQAAIFCEAL 356
>gi|321261750|ref|XP_003195594.1| pseudouridylate synthase [Cryptococcus gattii WM276]
gi|317462068|gb|ADV23807.1| pseudouridylate synthase, putative [Cryptococcus gattii WM276]
Length = 511
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 156/320 (48%), Gaps = 63/320 (19%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN------TIAHHLLKALQKTCLIEDK---EKSSFAC 52
R IAL I Y G+ Y G +Q + T+ LL AL+KT LI + E F
Sbjct: 73 RHIALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGR 132
Query: 53 CGRTDSGVSAFCQVVTLKIRS---------------------KLTSP----------GEE 81
CGRTD GVS QV+ L +RS ++ P G+E
Sbjct: 133 CGRTDRGVSGEGQVINLWVRSSRRRDDGGGELGDGWRDAAEPEVEKPVVVQEDGEAKGQE 192
Query: 82 SDD---------NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF---- 128
+E PY K+LN+ LP I+V+AWSP+P + +RF C +R+Y+Y F
Sbjct: 193 KKSKIVQPTRQPSEFPYPKLLNSVLPPSIRVLAWSPIPSSFDSRFSCTYRHYRYAFHTRP 252
Query: 129 --PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW-QNVQFN 185
LD++ M + AQ L+G HD+RN CK++ + N R GV AW + +
Sbjct: 253 TPTSPELDLELMSQGAQLLLGEHDYRNFCKLDGSKQIENHTR-----GVLKAWFEGGESQ 307
Query: 186 DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVR 245
+ FN+ FLWHQ+R I++VLFL+G E P I+ L+D+E++P KP Y M
Sbjct: 308 GVGEGMMVFNLIGTAFLWHQVRHIVAVLFLIGAKLEPPSIVSDLLDVERFPSKPNYTMGH 367
Query: 246 GEPLNLYHTEF--DNLTWHY 263
PL L+H + D + W +
Sbjct: 368 PLPLTLHHCGYPDDLIDWRF 387
>gi|121706104|ref|XP_001271315.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1]
gi|119399461|gb|EAW09889.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1]
Length = 604
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 166/366 (45%), Gaps = 106/366 (28%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKSSF---------- 50
IALK Y G Y+G + + TI + KA+++T LI + F
Sbjct: 112 IALKFAYLGQRYNGLEHANGNVTPLPTIEEEIWKAMRRTRLIFPTDAEPFDDSRGPRALK 171
Query: 51 -------AC----CGRTDSGVSAFCQVVTLKIRSK-----------------LTSPGEES 82
C GRTD GVSAF QV+ +++RS L +P E++
Sbjct: 172 PYSLSWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPATEVTSDVDMTGLDAPAEDT 231
Query: 83 -DD--NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQAG------ 132
DD +E+PY+ MLN LP DI+++AW P P + ARF C R YKY+F Q
Sbjct: 232 WDDIADEIPYISMLNRVLPEDIRILAWCPQPPPGFDARFSCRERQYKYFFTQPAFSPTPG 291
Query: 133 -----------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
LDIDAM +AA++ G HDFRN CK++ + NF R+
Sbjct: 292 PLGLALQAVDSANKIPAKYREGWLDIDAMREAAKHFEGVHDFRNFCKLDTSKQIENFERI 351
Query: 170 VTHA------------------GVTSAWQNVQFND-----SHHNICEFNIRSQGFLWHQI 206
+ HA G ++ +V D + + FN+ FLWHQ+
Sbjct: 352 IYHADIELVDPKHHPLGYVNQPGFQASENSVVGADTVAQATAAQVYVFNLHGSAFLWHQV 411
Query: 207 RCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------D 257
R ++S+LFLVGQG E P I+ +L+D+ K PRKP Y M PL L++ F D
Sbjct: 412 RHMVSILFLVGQGLESPSIVAELLDVSKNPRKPTYEMASDAPLVLWNCIFPDESNDSRKD 471
Query: 258 NLTWHY 263
L W Y
Sbjct: 472 ALDWVY 477
>gi|159127305|gb|EDP52420.1| pseudouridylate synthase 3 [Aspergillus fumigatus A1163]
Length = 610
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 163/368 (44%), Gaps = 108/368 (29%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKSSF---------- 50
IALK Y G Y+G + + TI L KA+++T LI K +F
Sbjct: 116 IALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPRELK 175
Query: 51 -------AC----CGRTDSGVSAFCQVVTLKIRS--------------KLTSPGEESDD- 84
C GRTD GVSAF QV+ +++RS ++TS G+ D
Sbjct: 176 PYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDVEMTSGGQADDTW 235
Query: 85 ----NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG------- 132
+E+PY+ +LN LP DI+++AW P P + ARF C R YKY+F Q
Sbjct: 236 DDIADEIPYISILNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPTPGP 295
Query: 133 ---------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
LDIDAM +AA+Y G HDFRN CK++ + NF R++
Sbjct: 296 LGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERIIY 355
Query: 172 HAGV---------------------------TSAWQNVQFNDSHHNICEFNIRSQGFLWH 204
HA + TSA + + + FN+ FLWH
Sbjct: 356 HADIELLDPKDHPLGYVNQPGFQALQDAPARTSAESGTFTSPAAAKVYVFNLHGSAFLWH 415
Query: 205 QIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF-------- 256
Q+R ++S+LFLVGQG E P I++ L+D+ K P KP Y M PL L+ F
Sbjct: 416 QVRHMVSILFLVGQGLEPPTIVRDLLDVSKNPCKPTYEMASDAPLVLWDCIFPDEASGSR 475
Query: 257 -DNLTWHY 263
D L W Y
Sbjct: 476 KDALNWVY 483
>gi|40882706|gb|AAR96247.1| putative pseudouridine synthase [Oryza sativa Japonica Group]
gi|108708473|gb|ABF96268.1| tRNA pseudouridine synthase A family protein [Oryza sativa Japonica
Group]
Length = 411
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 29/293 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R IALKI+Y G ++GF + ++ T+ + KAL++ L+ +++S ++ CGRTD GV
Sbjct: 92 RLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGV 151
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
SA QV++L +RS + +D K+ + ARF CL
Sbjct: 152 SATGQVISLFLRSNI-----------------------KDAKLDVLDNKSGDFLARFSCL 188
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R YKY F + L+I M KAA +G HD+RN CKM+ N V N+RR +T +++ Q
Sbjct: 189 GREYKYLFWKGDLNISEMQKAALKFIGEHDYRNFCKMDAAN-VSNYRRHITDFNISAYDQ 247
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
+++ + I+ FLWHQ+RC+++VLFL+GQG E P I+ L+DI K PRKP
Sbjct: 248 RSNYDE----LWAITIKGSAFLWHQVRCMVAVLFLIGQGLETPCIVDSLLDITKTPRKPQ 303
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
Y M PL L FD + + ++ L +++ ++A + E +
Sbjct: 304 YKMASEIPLILRSCLFDEVNFMCSSEASQALIEHLKDEYHQYMLQAAIFCEAL 356
>gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 156/324 (48%), Gaps = 85/324 (26%)
Query: 4 IALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLIEDKEKS------------ 48
IALK Y G Y+G + T+ T+ L KAL++T LI + S
Sbjct: 117 IALKFAYLGQAYNGLEHTNGNTTPLPTVEEVLWKALRRTRLISPETTSDLEPSDRAERVP 176
Query: 49 -----------SFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNL 97
++ GRTD GVSAF QV+ L++R+ +E+ Y+ +LN L
Sbjct: 177 MRPYHLYWDGCEYSKAGRTDKGVSAFGQVIGLRVRT-----------DEMNYINVLNRVL 225
Query: 98 PRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF------PQAG------------------ 132
P DI+V+AW P P + ARF C R YKY+F P G
Sbjct: 226 PEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFSPTPGSIGFQNRAQNGNGPRAEF 285
Query: 133 ----LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSH 188
LDI+AM +AA++ G+HDFRN CK++ + NF R++ H+ + S
Sbjct: 286 REGWLDIEAMREAAKHFEGSHDFRNFCKLDTNKQIDNFERIIHHS----------ISQSI 335
Query: 189 HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEP 248
+ FN+ FLWHQ+R ++++LFLVGQG E P I+ +L+D+ K PRKP Y M P
Sbjct: 336 PQVYSFNLHGSAFLWHQVRHMVAILFLVGQGLESPSIVPELLDVAKNPRKPTYAMADDAP 395
Query: 249 LNLYHTEF---------DNLTWHY 263
L L+ F D+L W Y
Sbjct: 396 LVLWDCIFPDVESGSRADSLNWIY 419
>gi|407919213|gb|EKG12467.1| Pseudouridine synthase I TruA [Macrophomina phaseolina MS6]
Length = 609
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/445 (30%), Positives = 184/445 (41%), Gaps = 153/445 (34%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI---------EDK---E 46
R IALK Y G NY+GF+ ++ TI L KAL KT LI ED E
Sbjct: 82 RLIALKFAYLGSNYNGFEHHANNMTPLPTIEEELWKALNKTRLILPTPKPGLKEDDINWE 141
Query: 47 KSSFACCGRTDSGVSAFCQVVTLKIRSK-------------------------------- 74
++ CGRTD GVSAF QV+ +++RS
Sbjct: 142 GCEYSKCGRTDRGVSAFGQVIGVRVRSNRPKPKPKKKQKLEDGAAAAAQEGGADAMEGVE 201
Query: 75 -----------------LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYSAR 116
P + +E+PY ++LNN LP DI+V+AW P P + +SAR
Sbjct: 202 TGADAAVAAAEAGAEEEYEEPPFDDVKDEMPYCRVLNNVLPPDIRVLAWCPNPGDSFSAR 261
Query: 117 FDCLFRNYKYWF------PQAG----------------LDIDAMHKAAQYLVGTHDFRNL 154
F+C R YKY+F P G LDI AM +AA YL G HDFRN
Sbjct: 262 FNCKERRYKYFFTNPAFAPTPGAAGVYGGGEQSMREGWLDIAAMREAASYLEGLHDFRNF 321
Query: 155 CKMNVGNGVVNFRRLVTHA---------GVTSAWQNVQF--------------------- 184
CK++ + NF R + HA G QN QF
Sbjct: 322 CKVDPAKQITNFERRIFHASIDRWNGGSGFARYTQNPQFQIPGLKPEERQSVVVGSGSGS 381
Query: 185 -----NDSHHN--ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
D +H + FN+ FLWHQ+R +++VLFLVGQG EKP I+++L+D+ P
Sbjct: 382 GNDRDGDENHGPGLFTFNVHGSAFLWHQVRHLIAVLFLVGQGLEKPTIVKELLDVRSNPT 441
Query: 238 KPVYPMVRGEPLNLY-------------HTEFDNLTWHY----------------DEIEV 268
KP Y M PL L+ H++ D + W Y ++
Sbjct: 442 KPKYEMASDTPLVLWDCIFPADQEGHPDHSQPDAMNWIYVGDERAFKGPRGNGLEEKFGH 501
Query: 269 SHVLRDLHEDWSLLSIKATMLGEMI 293
V+ DL E W I + G ++
Sbjct: 502 GGVIPDLWEVWHRRRIDEVLAGSLL 526
>gi|296824052|ref|XP_002850540.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480]
gi|238838094|gb|EEQ27756.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480]
Length = 614
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 195/469 (41%), Gaps = 147/469 (31%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKS---------- 48
R IALK Y G Y+G + + TI L KAL+KT LI K
Sbjct: 91 RHIALKFAYLGKRYNGLEHANGNFTEVPTIEEELWKALRKTRLIFPTHKDCIDDFAVPSR 150
Query: 49 ---------SFACCGRTDSGVSAFCQVVTLKIRS-----------------------KLT 76
++ CGRTD GVSAF QV+ +++RS ++
Sbjct: 151 PQSIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLKPAAPSLAAEGKGKRTTGSAAAAVS 210
Query: 77 SPGEES------------------DD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSA 115
PG+E+ DD +ELPY+++LN LP DI+V+AW P P + A
Sbjct: 211 EPGDENILGSFDVSDKEEAKAPVWDDIADELPYIQILNGALPDDIRVLAWCPHPPPDFDA 270
Query: 116 RFDCLFRNYKYWFPQAG-----------------------------LDIDAMHKAAQYLV 146
RF C R Y+Y+F Q LDI+AM +AAQ+ V
Sbjct: 271 RFSCRQRRYRYFFTQPAFCPAPGARGIVRAPELKQDLSLPKLREGWLDIEAMREAAQHFV 330
Query: 147 GTHDFRNLCKMNVGNGVVNFRRLVTHA------------GVTSAWQNVQFNDSHHN---- 190
G+HDFRN CK++ + NF R + A G QF++S N
Sbjct: 331 GSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQKTPLGFVQMPGFEQFDNSPRNTGVS 390
Query: 191 ------------ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+ F + FLWHQIR ++ +LFLVGQG E P I+ QL+D+ K PR+
Sbjct: 391 ESVSDTSPAAAKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEPPSIVPQLLDVTKNPRR 450
Query: 239 PVYPMVRGEPLNL----YHTEFDNLTWHY---DEIEVSH------------VLRDLHEDW 279
PVY M PL L + E D L W Y SH ++ DL W
Sbjct: 451 PVYEMASDSPLVLWDCIFGEEEDELDWVYPGDPRAGKSHSQRTDGNFGQGGIVEDLWSLW 510
Query: 280 SLLSIKATMLGEMIKDTVRESKCTM---GDLDINHLIEGEFSRPGRILS 325
I + G +++ + T GD ++L G+ +R R+ S
Sbjct: 511 RNRKIDELLAGTLLESMANRGQLTALSKGDDHPSNL--GQAARSPRVFS 557
>gi|396496281|ref|XP_003844707.1| similar to pseudouridylate synthase 3 [Leptosphaeria maculans JN3]
gi|312221288|emb|CBY01228.1| similar to pseudouridylate synthase 3 [Leptosphaeria maculans JN3]
Length = 597
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 167/388 (43%), Gaps = 115/388 (29%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIE--------------- 43
R IALK Y G Y+GF+ ++ TI L KAL KT LI
Sbjct: 70 RLIALKFAYLGQRYNGFEHHKNNSTPLPTIEEELWKALVKTRLINPIPTQGDATGYSRVD 129
Query: 44 -------DKEKS-------SFACCGRTDSGVSAFCQVVTLKIRSKLTSP----------- 78
D+E + ++ CGRTD GVSAF QV+ +++RS P
Sbjct: 130 RKTFAAWDREGADVNWEGCEYSKCGRTDRGVSAFGQVIGVRVRSNRPLPKTAKAQDELSA 189
Query: 79 ---------------------GEESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYS 114
G+ +D +ELPY++ LN LP DI+V AW P P +S
Sbjct: 190 SEQAKTSEEPISMADSEPETEGKSFNDLTDELPYIQHLNRVLPPDIRVYAWCPNPPPDFS 249
Query: 115 ARFDCLFRNYKYWF------PQAG---------------------LDIDAMHKAAQYLVG 147
ARF C R YKY+F P G LDI+AM K Q L+G
Sbjct: 250 ARFSCKERRYKYFFTNPSFAPVPGSSGVYNTHTSSPTATRTREGWLDIEAMRKGCQQLIG 309
Query: 148 THDFRNLCKMNVGNGVVNFRRLVTHAGV-----------------TSAWQNVQFNDSHHN 190
HDFRN CK++ + NF+R + HA + S W N +
Sbjct: 310 LHDFRNFCKIDASKQLSNFQRRIFHADIEEVSPLSIPSFLSHPALQSPWANSPAVEQQPK 369
Query: 191 ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLN 250
+ F + FLWHQ+R +++VLFL+GQG E P +I L+DI P +P Y M PL
Sbjct: 370 LYSFTLHGSAFLWHQVRSLIAVLFLIGQGLEPPSLISSLLDISANPTRPKYEMASDAPLV 429
Query: 251 LYHTEFDNLTWHYDEIEVSHVLRDLHED 278
L+ F H DE+E S +ED
Sbjct: 430 LWDCIFP----HADEVEASEDREKGYED 453
>gi|330914180|ref|XP_003296528.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1]
gi|311331289|gb|EFQ95392.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1]
Length = 599
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 174/381 (45%), Gaps = 108/381 (28%)
Query: 2 RPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLIE--------------- 43
R IALK Y G Y+GF+ T+ TI L KAL KT LI
Sbjct: 78 RLIALKFAYLGQKYNGFEHHKNNTTPLPTIEEELWKALVKTRLITPIPTAGGEKESYERI 137
Query: 44 --------DKEKS-------SFACCGRTDSGVSAFCQVVTLKIRS------KLTSPGE-- 80
D+E + ++ CGRTD GVSAF QV+ +++RS L SP E
Sbjct: 138 DRKTFARWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKALQSPNETL 197
Query: 81 ------------ESDDN-----------ELPYLKMLNNNLPRDIKVVAWSP-VPEKYSAR 116
SD N ELPY+++LN LP DI+V AW P P +SAR
Sbjct: 198 ETNEDENPPSSPASDSNPPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNPPADFSAR 257
Query: 117 FDCLFRNYKYWF---------------------PQA----GLDIDAMHKAAQYLVGTHDF 151
F C R YKY+F PQA LDI+AM + +LVG HDF
Sbjct: 258 FSCKERRYKYFFTNPCFAPVPGSSGRYNTSSTSPQAMREGWLDINAMKQGCAHLVGLHDF 317
Query: 152 RNLCKMNVGNGVVNFRRLVTHAGVTSAWQ-NVQFNDSHHNIC-------------EFNIR 197
RN CK++ + NF+R + HA + +V SH + F +
Sbjct: 318 RNFCKIDASKQLTNFQRRIFHADIEEVSPLSVPAFLSHPALSTPGLPASEAPKLYSFTLH 377
Query: 198 SQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
FLWHQ+R +++VLFL+GQG E P+II +L+DIE P +P Y M PL L+ F
Sbjct: 378 GSAFLWHQVRSLIAVLFLIGQGLESPDIIPKLLDIEANPTRPKYEMASDAPLVLWDCIFP 437
Query: 258 NLTWHYDEIEVSHVLRDLHED 278
H DE++ S + ++D
Sbjct: 438 ----HADEVQSSEERQHGYQD 454
>gi|328770686|gb|EGF80727.1| hypothetical protein BATDEDRAFT_3084 [Batrachochytrium
dendrobatidis JAM81]
Length = 289
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTS-SDNTIAHHLLKALQKTCLI-EDKEKSSFACCGRTDSG 59
R IALKI Y G Y+GF ++ S T+ ++ KAL+ LI D +++ CGRTD G
Sbjct: 24 RHIALKISYIGDKYYGFASASNDSVPTVESYIFKALEVARLIPSDGGACAWSRCGRTDKG 83
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
VSAF QVV++ +R+ + D ++LPYL +LN LP DI+V+AWSPV + ARF C
Sbjct: 84 VSAFDQVVSVWVRTARPGDRDTLDWDQLPYLNILNRLLPDDIRVLAWSPVDPIFDARFTC 143
Query: 120 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN--FRRLVTHAGVTS 177
R Y Y+F AGLD+ AM AA VGTHD R++CK++ F R + +
Sbjct: 144 SHRKYNYFFDGAGLDLIAMRDAASRFVGTHDCRHICKIDPTKAAREGFFVRTIMECDIVP 203
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
V + + ++ + FLWHQ+R +M++LFL+G+G E P++I ++D+ K+
Sbjct: 204 ----VPVDGAPDRFHVLVVKGRAFLWHQVRNMMALLFLIGRGMEMPDMISDMLDLTKHAP 259
Query: 238 ---KPVYPMVRGEPLNLYHTEF 256
+P Y M PL L +
Sbjct: 260 AAGRPFYEMAPDGPLVLVECAY 281
>gi|70999131|ref|XP_754287.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293]
gi|66851924|gb|EAL92249.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293]
Length = 610
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 162/368 (44%), Gaps = 108/368 (29%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKSSF---------- 50
IALK Y G Y+G + + TI L KA+++T LI K +F
Sbjct: 116 IALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPRELK 175
Query: 51 -------AC----CGRTDSGVSAFCQVVTLKIRS--------------KLTSPGEESDD- 84
C GRTD GVSAF QV+ +++RS ++TS G D
Sbjct: 176 PYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDVEMTSGGHADDTW 235
Query: 85 ----NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG------- 132
+E+PY+ +LN LP DI+++AW P P + ARF C R YKY+F Q
Sbjct: 236 DDIADEIPYISILNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPTPGP 295
Query: 133 ---------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
LDIDAM +AA+Y G HDFRN CK++ + NF R++
Sbjct: 296 LGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERIIY 355
Query: 172 HAGV---------------------------TSAWQNVQFNDSHHNICEFNIRSQGFLWH 204
HA + TSA + + + FN+ FLWH
Sbjct: 356 HADIELLDPKDHPLGYVNQPGFQALQDAPARTSAESGTFTSPAAAKVYVFNLHGSAFLWH 415
Query: 205 QIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF-------- 256
Q+R ++S+LFLVGQG E P I++ L+D+ K P KP Y M PL L+ F
Sbjct: 416 QVRHMVSILFLVGQGLEPPTIVRDLLDVSKNPCKPTYEMASDAPLVLWDCIFPDEASGSR 475
Query: 257 -DNLTWHY 263
D L W Y
Sbjct: 476 KDALNWVY 483
>gi|451993927|gb|EMD86399.1| hypothetical protein COCHEDRAFT_1115979 [Cochliobolus
heterostrophus C5]
Length = 605
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 168/386 (43%), Gaps = 113/386 (29%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI------------EDKE 46
R IALK Y G Y+GF+ ++ TI L KAL KT LI E +
Sbjct: 78 RLIALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTRLITPATTAEGEKAYERID 137
Query: 47 KSSFAC-----------------CGRTDSGVSAFCQVVTLKIRSKLTSP----------- 78
K +FA CGRTD GVSAF QV+ +++RS P
Sbjct: 138 KKTFASWDREGVDVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKKPQPSEDTPK 197
Query: 79 -GEESDD--------------------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSAR 116
G+E +D +ELPY+++LN LP DI+V AW P P +SAR
Sbjct: 198 AGQEDEDSMLSSKQEPESPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNPPPDFSAR 257
Query: 117 FDCLFRNYKYWF------PQAG-----------------------LDIDAMHKAAQYLVG 147
F C R YKY+F P G LDIDAM + Q+L+G
Sbjct: 258 FSCKERRYKYFFTNPCFAPVPGSSGLYNPNTPISSENKPKMREGWLDIDAMKQGCQHLIG 317
Query: 148 THDFRNLCKMNVGNGVVNFRRLVTHAGVTSA---------------WQNVQFNDSHHNIC 192
HDFRN CK++ + NF R + HA + N ++ +
Sbjct: 318 LHDFRNFCKIDASKQITNFHRRIFHADIEEVSPLSIPAFLSHPALQASNDTNTETQPKLY 377
Query: 193 EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
F + FLWHQ+R ++++LFL+GQG E P +I L+DI P +P Y M PL L+
Sbjct: 378 SFTLHGSAFLWHQVRSLVAILFLIGQGLESPSLIPVLLDISANPTRPKYEMASDAPLVLW 437
Query: 253 HTEFDNLTWHYDEIEVSHVLRDLHED 278
F H DE++ S +ED
Sbjct: 438 DCIFP----HPDEVQSSDEREHGYED 459
>gi|405122442|gb|AFR97209.1| pseudouridylate synthase [Cryptococcus neoformans var. grubii H99]
Length = 499
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 154/322 (47%), Gaps = 67/322 (20%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN------TIAHHLLKALQKTCLIEDK---EKSSFAC 52
R IAL I Y G+ Y G +Q + T+ LL AL+KT LI + E F
Sbjct: 60 RHIALLISYHGWPYSGLALQAPATPDGPPIPTVEAELLAALEKTRLIAEGKGWEGCGFGR 119
Query: 53 CGRTDSGVSAFCQVVTLKIRS--------------------------------------- 73
CGRTD GVS QVV L +RS
Sbjct: 120 CGRTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAAEPEVEKTVIVQEDEGQGGKE 179
Query: 74 ---KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-- 128
K+ P + +E PY K+LN+ LP I+++AWSP+P + +RF C +R+Y+Y F
Sbjct: 180 EKSKIVRPPRQP--SEFPYPKLLNSVLPPSIRILAWSPIPSSFDSRFSCTYRHYRYAFHT 237
Query: 129 ----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW-QNVQ 183
+D++ M + AQ L+G HD+RN CK++ + N R GV AW + +
Sbjct: 238 RPTPTSPEVDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTR-----GVLKAWFEGGE 292
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ FN+ FLWHQ+R I++VLFLVG E P I+ L+D+E++P KP Y M
Sbjct: 293 SQGVGEGMMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVERFPSKPNYTM 352
Query: 244 VRGEPLNLYHTEF--DNLTWHY 263
PL L+H + D + W +
Sbjct: 353 GHPLPLTLHHCGYPDDLIDWRF 374
>gi|313229675|emb|CBY18490.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 150/266 (56%), Gaps = 17/266 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
R IAL+ Y G Y+G Q + TI + A+ +T +++D + + GRTD G
Sbjct: 65 RKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAILRTKVVDDIGTADYIAGGRTDKG 124
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 115
V A V++L + S+L+ +E ++N E ++ ++N LP DI + +W+P+ +SA
Sbjct: 125 VHAVNNVISLFVNSRLSE--DEINENVTVGERNFVAIINRQLPDDIWITSWAPISFDFSA 182
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RF C R+Y Y F +GLD++ M +AA YL+G HDFRN + + N R+ A +
Sbjct: 183 RFSCKSRHYNYIFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLERQ--NTVRVCFAADI 240
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ ++C F+I++ GFL+HQIR M++L LVG EK I+++L+D+EKY
Sbjct: 241 KQV-------PNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLDVEKY 293
Query: 236 PRKPVYPMVRGEPLNLYHTEFDNLTW 261
PR+P Y + L L E++N+ W
Sbjct: 294 PRRPSYKYANPDGLVLIDCEYENVEW 319
>gi|451856829|gb|EMD70120.1| hypothetical protein COCSADRAFT_167047 [Cochliobolus sativus
ND90Pr]
Length = 605
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 169/386 (43%), Gaps = 113/386 (29%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI------------EDKE 46
R IALK Y G Y+GF+ ++ TI L KAL KT LI E +
Sbjct: 78 RLIALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTRLITPATTSEGEKAYERID 137
Query: 47 KSSFA-------------C----CGRTDSGVSAFCQVVTLKIRSKLTSPGE--------- 80
K +FA C CGRTD GVSAF QV+ +++RS P E
Sbjct: 138 KKTFANWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKESRPSEDTPQ 197
Query: 81 ---ESDD--------------------NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSAR 116
E DD +ELPY+++LN LP DI+V AW P P ++SAR
Sbjct: 198 ADQEDDDSILPSKQEPESPPKPFSDLIDELPYIQLLNRVLPPDIRVYAWCPNPPPEFSAR 257
Query: 117 FDCLFRNYKYWF------PQAG-----------------------LDIDAMHKAAQYLVG 147
F C R YKY+F P G LDI AM K Q+L+G
Sbjct: 258 FSCKERRYKYFFTNPCFAPVPGSSGLYNSNISASSENKPKMREGWLDIAAMKKGCQHLIG 317
Query: 148 THDFRNLCKMNVGNGVVNFRRLVTHAGVTS-------------AWQNVQFNDS--HHNIC 192
HDFRN CK++ + NF R + HA + A Q D+ +
Sbjct: 318 LHDFRNFCKVDASKQITNFHRRIFHADIEEVSPLSIPAFLSHPALQAPDGTDTETQPKLY 377
Query: 193 EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
F + FLWHQ+R ++++LFL+GQG E P +I L+DI P +P Y M PL L+
Sbjct: 378 SFTLHGSAFLWHQVRSLVAILFLIGQGLESPSLIPALLDISANPTRPKYEMASDAPLVLW 437
Query: 253 HTEFDNLTWHYDEIEVSHVLRDLHED 278
F H DE++ S +ED
Sbjct: 438 DCIFP----HLDEVQSSEEREHGYED 459
>gi|406695768|gb|EKC99068.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 8904]
Length = 532
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 152/322 (47%), Gaps = 69/322 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQ-TSSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTDS 58
R IAL + Y G+ Y G IQ TS T+ LLKAL+KT L+ E F+ CGRTD
Sbjct: 97 RHIALLVSYLGWPYSGLAIQPTSHYPTVEGELLKALEKTYLVGPGGWEACGFSRCGRTDR 156
Query: 59 GVSAFCQVVTLKIRSK-------------LTSPGEE------------------------ 81
GVS QV+ L +RS P EE
Sbjct: 157 GVSGAGQVLNLWVRSTRKEGDGGYPLNGTWKPPSEERVPRQSKAVEGMGEGAEGENTDAL 216
Query: 82 -----------SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-- 128
+L Y ++LN+ LP DI+V+AWSP P + +RF C FR+YKY F
Sbjct: 217 AEKQEKKTAKAPPQMDLGYPRLLNSVLPDDIRVLAWSPAPTDFDSRFSCDFRHYKYAFHI 276
Query: 129 -PQAG---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQF 184
P G LD+D M +AA+ L+G HDFRN CK++ + + +R V A F
Sbjct: 277 VPSPGAEPLDLDLMTEAAKLLLGEHDFRNFCKVDGSKQIESHKRTVLQA---------YF 327
Query: 185 NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMV 244
+ FN+ FLWHQ+R IM+VLFLVG E P ++ L+D+E++P K Y M
Sbjct: 328 EKESEGVYIFNLVGNAFLWHQVRHIMAVLFLVGSRLEPPSVVTDLMDVERFPGKLKYKMA 387
Query: 245 RGEPLNLYHTEF---DNLTWHY 263
PL L+ F L W Y
Sbjct: 388 DPIPLRLHECGFLPEAGLDWRY 409
>gi|167377399|ref|XP_001734387.1| tRNA pseudouridine synthase [Entamoeba dispar SAW760]
gi|165904128|gb|EDR29463.1| tRNA pseudouridine synthase, putative [Entamoeba dispar SAW760]
Length = 366
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/342 (33%), Positives = 168/342 (49%), Gaps = 32/342 (9%)
Query: 2 RPIALKILYQGFNYHGFQI------------QTSSDNTIAHHLLKALQKTCLIEDKEKSS 49
R IA+ + Y G +Y+G Q +D TI + L KAL KT LI++ +
Sbjct: 36 RHIAIHLTYIGIDYNGIQCTLLNDVTDSTFDSVVNDGTIEYQLFKALFKTRLIQNTKDCK 95
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPG--EESDDNELPYLKMLNNNLPRDIKVVAWS 107
+ CGRTD GVSAF QVV L +RS L + EL Y +MLN LP DI+ + W
Sbjct: 96 YNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPIDIRCLGWC 155
Query: 108 PVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
VP+ +++RF C R Y Y+F + D+ M +AAQ +G HDF N CK + V +
Sbjct: 156 GVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAAQLFLGEHDFTNFCKKDP--AVPHCI 213
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R V V + + + F + F+WHQ+R ++ LF +GQG PE I+
Sbjct: 214 RRVNSFEV----------EEINGLSRFVVCGTAFVWHQVRYMVGALFAIGQG-ANPESIK 262
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKAT 287
QL+D+E Y + + PL LY ++D + + D V +L DL E W + IK
Sbjct: 263 QLLDVEHYTKPNYFKYAPAYPLVLYECKYDRVEFLCDNSNVK-LLGDLVEAWKEIEIKGM 321
Query: 288 MLGEM----IKDTVRESKCTMGDLDINHLIEGEFSRPGRILS 325
M + ++ + + K T+G+ + +P RI S
Sbjct: 322 MRKSLMTLAMEQKMSDGKLTVGEKLKLIEKKKIELKPKRIDS 363
>gi|401884318|gb|EJT48486.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 2479]
Length = 532
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 152/322 (47%), Gaps = 69/322 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQ-TSSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTDS 58
R IAL + Y G+ Y G IQ TS T+ LLKAL+KT L+ E F+ CGRTD
Sbjct: 97 RHIALLVSYLGWPYSGLAIQPTSHYPTVEGELLKALEKTYLVGPGGWEACGFSRCGRTDR 156
Query: 59 GVSAFCQVVTLKIRSK-------------LTSPGEE------------------------ 81
GVS QV+ L +RS P EE
Sbjct: 157 GVSGAGQVLNLWVRSTRKEGDGGYPLNGTWKPPSEERVPRQSKAVEGMGEGAEGENTDAL 216
Query: 82 -----------SDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-- 128
+L Y ++LN+ LP DI+V+AWSP P + +RF C FR+YKY F
Sbjct: 217 AEKQEKKKAKAPPQMDLGYPRLLNSVLPDDIRVLAWSPAPTDFDSRFSCDFRHYKYAFHI 276
Query: 129 -PQAG---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQF 184
P G LD+D M +AA+ L+G HDFRN CK++ + + +R V A F
Sbjct: 277 VPSPGVEPLDLDLMTEAAKLLLGEHDFRNFCKVDGSKQIESHKRTVLQA---------YF 327
Query: 185 NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMV 244
+ FN+ FLWHQ+R IM+VLFLVG E P ++ L+D+E++P K Y M
Sbjct: 328 EKESEGVYIFNLVGNAFLWHQVRHIMAVLFLVGSRLEPPSVVTDLMDVERFPGKLKYKMA 387
Query: 245 RGEPLNLYHTEF---DNLTWHY 263
PL L+ F L W Y
Sbjct: 388 DPIPLRLHECGFLPEAGLDWRY 409
>gi|115391499|ref|XP_001213254.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624]
gi|114194178|gb|EAU35878.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624]
Length = 613
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 165/366 (45%), Gaps = 111/366 (30%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI--------------EDK- 45
IALK Y G Y+G + + TI L KAL+KT LI E +
Sbjct: 110 IALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKALRKTRLIFPTGATADDMREFQEPRA 169
Query: 46 --------EKSSFACCGRTDSGVSAFCQVVTLKIRSK-------LTSPGEES-------- 82
E ++ GRTD GVSAF QVV +++RS + PG ++
Sbjct: 170 LKPYALNWEGCEYSKAGRTDRGVSAFGQVVGIRVRSARPKKKAAVADPGADTPMQDGGEG 229
Query: 83 --------DDN------ELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYW 127
DDN ELPY+ +LN LP DI+V+AW P PE + ARF C R YKY+
Sbjct: 230 NVTADRSVDDNWDDIADELPYINLLNRVLPEDIRVLAWCPHPPEGFDARFSCRERQYKYF 289
Query: 128 FPQAG----------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNV 159
F Q LDI+AM +AA+ VG HDFRN CK++
Sbjct: 290 FTQPAFSPTPGPGGFAPRANDKAGSVPKYREGWLDIEAMREAARMFVGRHDFRNFCKLDT 349
Query: 160 GNGVVNFRRLVTHAGV-----------------------TSAWQNVQFND----SHHNIC 192
+ NF R++ H+ + SA Q + + +
Sbjct: 350 SKQIENFERIIYHSDIELVDPRSTPLGYVAQPGFTALESPSAEQGSGSLETPVPTASQVY 409
Query: 193 EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
F+++ FLWHQ+R ++SVLFLVGQG EKP I+ +L+D+ K PRKP Y M PL L+
Sbjct: 410 VFSLQGSAFLWHQVRHMVSVLFLVGQGLEKPSIVSELLDVSKNPRKPSYEMASDAPLVLW 469
Query: 253 HTEFDN 258
F N
Sbjct: 470 DCIFPN 475
>gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia]
Length = 414
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 145/266 (54%), Gaps = 18/266 (6%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A K+ Y G NYHG + Q + NTI +HL KALQ+ +I++++ ++ GRTD GVSA
Sbjct: 51 VAFKLAYVGINYHGLEQQINQQNTIENHLFKALQRVRMIDNRDDCNYTRAGRTDKGVSAI 110
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV L +R S + Y ++LN LP DI+++ V EK++AR+DC+ R
Sbjct: 111 GNVVALNVRKIGKS--------DKLYAQILNRVLPEDIQILDECIVDEKFNARYDCIKRV 162
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW---- 179
YKY+F + +I+ M +A +G HDFRN CK++V NF R + + + +
Sbjct: 163 YKYYFYKMDYNIELMTEAMLLFIGEHDFRNFCKLDVIAN-QNFVRTIMNITIEEVFPENA 221
Query: 180 ---QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+ +D + I FLWHQIR +M+VLFL+G+G EK +I L K+
Sbjct: 222 PRCSTLFKDDDRLRLYCVTIEGNAFLWHQIRYMMAVLFLIGKGIEKSSVITDL--FTKFD 279
Query: 237 RKPVYPMVRGEPLNLYHTEFDNLTWH 262
KP Y M PL L++ EF W+
Sbjct: 280 GKPNYQMAPDYPLVLHNCEFKQQLWN 305
>gi|367035286|ref|XP_003666925.1| hypothetical protein MYCTH_58299 [Myceliophthora thermophila ATCC
42464]
gi|347014198|gb|AEO61680.1| hypothetical protein MYCTH_58299 [Myceliophthora thermophila ATCC
42464]
Length = 558
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 157/321 (48%), Gaps = 50/321 (15%)
Query: 2 RPIALKILYQGFNYHGFQIQTS-SDNTIAHHLLKALQKTCLI--EDKEKSSFAC-----C 53
R +ALK+ Y G Y GF+ Q + T+ L KAL K+CLI +D + F C
Sbjct: 87 RLVALKLAYLGKRYGGFEYQAGVTVPTVEEELWKALVKSCLIWPDDPARVDFGPWEYSKC 146
Query: 54 GRTD-SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSP-VPE 111
GRTD G + P + +E+ Y ++LN LP DI+V+AW+P +P
Sbjct: 147 GRTDRGGEGEGEGEGEGEGEGDGGKPAWDPIADEINYPRVLNRLLPPDIRVLAWAPTLPA 206
Query: 112 KYSARFDCLFRNYKYWFPQAG--------------------LDIDAMHKAAQYLVGTHDF 151
+SARF C R Y+Y+F Q LDI AM +AA+ G HDF
Sbjct: 207 GFSARFSCWERQYRYFFTQPAFTPLPASLDPEGKRGGKEGWLDIGAMRQAAKLFEGVHDF 266
Query: 152 RNLCKMNVGNGVVNFRRLVTHAGVT------SAWQNVQFND----------SHHNICEFN 195
RN CK++ + NF R V A + SA + D ++ + F+
Sbjct: 267 RNFCKVDGAKQITNFTRRVFEADIVEVKDTGSALPYLDLPDFKADGSADGTAYPKVYYFH 326
Query: 196 IRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTE 255
+R FLWHQIR +++VLFL+GQG EKP ++ L+D+EKYPRKP Y M PL L+
Sbjct: 327 VRGSAFLWHQIRHMVAVLFLIGQGLEKPSLVTDLLDVEKYPRKPNYTMADEVPLVLWDCI 386
Query: 256 FDNLTWHYDEIEVSHVLRDLH 276
F DE++ D+H
Sbjct: 387 FP----REDELKSKKAALDVH 403
>gi|358367989|dbj|GAA84607.1| pseudouridylate synthase 3 [Aspergillus kawachii IFO 4308]
Length = 609
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/377 (32%), Positives = 166/377 (44%), Gaps = 115/377 (30%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKSS--------- 49
R IALK Y G Y+G + + TI + KAL+KT LI + +
Sbjct: 107 RFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALRKTRLIFPTDTTGDEFVESYAP 166
Query: 50 --------------FACCGRTDSGVSAFCQVVTLKIRSKLTSPGE--ESDDN-------- 85
++ GRTD GVSAF QV+ +++RS E +SD+N
Sbjct: 167 RETKPYYINWDGCEYSKAGRTDRGVSAFGQVIGIRVRSARPKRNEVVQSDENADTTMQNT 226
Query: 86 ----------------ELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF 128
ELPY+ MLN LP DI+V+AW P PE + ARF C R+YKY+F
Sbjct: 227 DEANASADDGWDDVKDELPYVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCGERHYKYFF 286
Query: 129 PQAG--------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 162
Q LDI+AM KAA+Y GTHDFRN CK++V
Sbjct: 287 TQPAFSPTPGASGFVPRDGSGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNFCKLDVTKQ 346
Query: 163 VVNFRRLVTHAGV---------------------------TSAWQNVQFNDSHHNICEFN 195
+ +F R + A + SA + + + F+
Sbjct: 347 IESFYRDIFRADIELLDARTNPLGYVTQPEFQARPASGADESAESSAAPLPTAAQVYVFH 406
Query: 196 IRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYH-- 253
+ FLWHQ+R +++VLFLVGQG E+P I+Q L+D+ K PRKP Y M PL L+
Sbjct: 407 LEGSAFLWHQVRHMVNVLFLVGQGLEEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDCI 466
Query: 254 -------TEFDNLTWHY 263
+ D+L W Y
Sbjct: 467 YPDKKSGSRADSLDWVY 483
>gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 150/266 (56%), Gaps = 17/266 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
R IAL+ Y G Y+G Q + TI + A+ +T +++D + + GRTD G
Sbjct: 65 RKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAMLRTKVVDDIGTADYIAGGRTDKG 124
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 115
V A V++L + S+L+ +E ++N E ++ ++N LP DI + +W+ + +SA
Sbjct: 125 VHAVNNVISLFVNSRLSE--DEINENVTVGERNFVAIINRQLPDDIWITSWAQISSDFSA 182
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RF+C R+Y Y F +GLD++ M +AA YL+G HDFRN + + N R+ A +
Sbjct: 183 RFNCKSRHYNYIFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLERQ--NTVRVCFAADI 240
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ ++C F+I++ GFL+HQIR M++L LVG EK I+++L+D+EKY
Sbjct: 241 KQV-------PNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLDVEKY 293
Query: 236 PRKPVYPMVRGEPLNLYHTEFDNLTW 261
PR+P Y + L L E++N+ W
Sbjct: 294 PRRPSYKYANPDGLVLIDCEYENVEW 319
>gi|49899182|gb|AAH75766.1| Zgc:56653 protein [Danio rerio]
Length = 386
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 117/170 (68%), Gaps = 12/170 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G+ Y GF +Q ++DNT+ L +AL KT LI+D++ S + CGRTD GVS
Sbjct: 58 RHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKLIQDRQTSCYHRCGRTDKGVS 117
Query: 62 AFCQVVTLKIRSK-------LTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV+++ +RS +T P + ++ +ELPY+K+LN LP+DI+++ W+PV
Sbjct: 118 AFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPQDIRILQWAPV 177
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNV 159
+SARFDC R Y+Y+FP+ LD++ M +AA+ GTHDFRNLCKM+V
Sbjct: 178 ESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDFRNLCKMDV 227
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
+D+EK PRKP Y M PL LY F+ + W + E H+L H+ W ++K +L
Sbjct: 225 MDVEKNPRKPQYSMAVDYPLALYDCHFEGVNWRNETEEEIHILNTFHQHWVQNAVKTQIL 284
Query: 290 GEMIKDTVRESKCTMGDLDINHLIEG 315
MI+ ++ + MG L L+EG
Sbjct: 285 LGMIQG-LQNTSTEMGSLQC-WLMEG 308
>gi|317027085|ref|XP_001400055.2| pseudouridylate synthase 3 [Aspergillus niger CBS 513.88]
gi|350634868|gb|EHA23230.1| hypothetical protein ASPNIDRAFT_37245 [Aspergillus niger ATCC 1015]
Length = 608
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 121/377 (32%), Positives = 166/377 (44%), Gaps = 115/377 (30%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKSS--------- 49
R IALK Y G Y+G + + TI + KAL+KT LI + +
Sbjct: 107 RFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALRKTRLIFPTDTTGDEFVESYAP 166
Query: 50 --------------FACCGRTDSGVSAFCQVVTLKIRSKLTSPGE--ESDDN-------- 85
++ GRTD GVSAF QV+ +++RS E +SD+N
Sbjct: 167 RETKPYYINWDGCEYSKAGRTDRGVSAFGQVIGIRVRSARPKRDEVVQSDENADTTMQNT 226
Query: 86 ----------------ELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF 128
ELPY+ MLN LP DI+V+AW P PE + ARF C R+YKY+F
Sbjct: 227 DEANASVDDGWDDIKDELPYVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCGERHYKYFF 286
Query: 129 PQAG--------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 162
Q LDI+AM KAA+Y GTHDFRN CK++V
Sbjct: 287 TQPAFSPTPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNFCKLDVTKQ 346
Query: 163 VVNFRRLVTHAGV---------------------------TSAWQNVQFNDSHHNICEFN 195
+ +F R + A + SA + + + F+
Sbjct: 347 IESFYRDIFRADIELLDARTNPLGYVTQPEFQARPASGADESAESSAAPLPTAAQVYVFH 406
Query: 196 IRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYH-- 253
+ FLWHQ+R +++VLFLVGQG E+P I+Q L+D+ K PRKP Y M PL L+
Sbjct: 407 LEGSAFLWHQVRHMVNVLFLVGQGLEEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDCI 466
Query: 254 -------TEFDNLTWHY 263
+ D+L W Y
Sbjct: 467 YPDKKSGSRADSLDWVY 483
>gi|134114618|ref|XP_774017.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256647|gb|EAL19370.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 514
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 156/325 (48%), Gaps = 70/325 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN------TIAHHLLKALQKTCLIEDK---EKSSFAC 52
R IAL I Y G+ Y G +Q + T+ LL AL+KT LI + E F
Sbjct: 73 RHIALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGR 132
Query: 53 CGRTDSGVSAFCQVVTLKIRS--------------------------------------- 73
CGRTD GVS QVV L +RS
Sbjct: 133 CGRTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAVEPEVEKMEKTVIVQEDEEKG 192
Query: 74 ------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
K+ P + +E PY K+LN+ LP I+++AWSP+P + +RF C +R+Y+Y
Sbjct: 193 VKEKKSKVIQPPRQP--SEFPYPKLLNSVLPPSIRILAWSPIPASFDSRFSCTYRHYRYA 250
Query: 128 F-----PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW-Q 180
F P + LD++ M + AQ L+G HD+RN CK++ + N R GV AW +
Sbjct: 251 FHTRPTPTSPELDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTR-----GVLKAWFE 305
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
+ + FN+ FLWHQ+R I++VLFLVG E P I+ L+D++++P KP
Sbjct: 306 GGESQGVGDGMMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVKRFPSKPN 365
Query: 241 YPMVRGEPLNLYHTEF--DNLTWHY 263
Y M PL L+H + D + W +
Sbjct: 366 YTMGHPLPLTLHHCGYPDDLIDWRF 390
>gi|58271292|ref|XP_572802.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229061|gb|AAW45495.1| pseudouridylate synthase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 514
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 154/325 (47%), Gaps = 70/325 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN------TIAHHLLKALQKTCLIEDK---EKSSFAC 52
R IAL I Y G+ Y G +Q + T+ LL AL+KT LI + E F
Sbjct: 73 RHIALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGR 132
Query: 53 CGRTDSGVSAFCQVVTLKIRS--------------------------------------- 73
CGRTD GVS QVV L +RS
Sbjct: 133 CGRTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAVEPEVEKMEKTVIVQEDEEKG 192
Query: 74 ------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
K+ P + +E PY K+LN+ LP I+++AWSP+P + +RF C +R+Y+Y
Sbjct: 193 VKEKKSKVIQPPRQP--SEFPYPKLLNSVLPPSIRILAWSPIPASFDSRFSCTYRHYRYA 250
Query: 128 F------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW-Q 180
F LD++ M + AQ L+G HD+RN CK++ + N R GV AW +
Sbjct: 251 FHTRPTPTSPELDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTR-----GVLKAWFE 305
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
+ + FN+ FLWHQ+R I++VLFLVG E P I+ L+D++++P KP
Sbjct: 306 GGKSQGVGDGMMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVKRFPSKPN 365
Query: 241 YPMVRGEPLNLYHTEF--DNLTWHY 263
Y M PL L+H + D + W +
Sbjct: 366 YTMGHPLPLTLHHCGYPDDLIDWRF 390
>gi|317137489|ref|XP_003190065.1| pseudouridylate synthase 3 [Aspergillus oryzae RIB40]
Length = 617
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 166/381 (43%), Gaps = 121/381 (31%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI--EDKEKSSF-------- 50
IALK Y G Y+G + + TI + KAL+KT LI E+ E F
Sbjct: 111 IALKFAYLGQRYNGLEHANGNVTPLPTIEEEMWKALRKTRLIFPENGEADGFEDTRGPRE 170
Query: 51 -------------ACCGRTDSGVSAFCQVVTLKIRSK----------------LTSPGEE 81
+ GRTD GVSAF QV+ L++RS GEE
Sbjct: 171 LKPYLINWEGYQYSKAGRTDRGVSAFGQVIGLRVRSARPKRDDVAQADPSSDTTMQTGEE 230
Query: 82 S-----------DD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYW 127
+ DD +ELPY+ +LN LP DI+V+AW P PE + ARF C R+YKY+
Sbjct: 231 ASALDDTAQDNWDDIADELPYVSILNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYKYF 290
Query: 128 FPQAG-----------------------------LDIDAMHKAAQYLVGTHDFRNLCKMN 158
F Q LDI+AM +AA+Y G HDFRN CK++
Sbjct: 291 FTQPAFSPTPGPLGFTSRANNKAGDSRAKYREGWLDIEAMREAAKYFEGVHDFRNFCKLD 350
Query: 159 VGNGVVNFRRLVTHAGV--------------TSAWQNVQFNDSHH-------------NI 191
+ NF R++ H+ + +Q ++ + +
Sbjct: 351 TSKQIENFERVIYHSDIELLDPRSSPLGYVSQPGFQALEDPAAQQTPGSPESPSPTPSQV 410
Query: 192 CEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNL 251
FN+R FLWHQ+R ++ +LFLVGQG E P I+ L+DI K PRKP Y M PL L
Sbjct: 411 YVFNLRGSAFLWHQVRHMVGILFLVGQGLEPPTIVPDLLDITKNPRKPTYEMASDAPLVL 470
Query: 252 YHTEF---------DNLTWHY 263
++ F D L W Y
Sbjct: 471 WNCVFPDENSGSREDALDWVY 491
>gi|440636881|gb|ELR06800.1| hypothetical protein GMDG_02238 [Geomyces destructans 20631-21]
Length = 628
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 171/393 (43%), Gaps = 122/393 (31%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKS---------- 48
R IALK+ Y G Y+GF+ ++ T+ + +AL K LI K S
Sbjct: 113 RLIALKLAYLGKGYNGFEHHLNNKTRLPTVEEKIWEALVKARLIFPKGASLDQHDGSGEI 172
Query: 49 -----SFACCGRTDSGVSAFCQVVTLKIRS-----------------------------K 74
++ CGRTD GVSAF QV+ L++RS +
Sbjct: 173 NWDGCDYSKCGRTDKGVSAFGQVIGLRVRSNRPLPKYTAEGPKYETDGFRHTKPRDGALE 232
Query: 75 LTSPG-----EES----------DD-------------NELPYLKMLNNNLPRDIKVVAW 106
+ SP EES DD +ELPY +LN LP DI+++AW
Sbjct: 233 MASPALRPSIEESRSQVTPELSIDDPEFEEPLNFDPIADELPYCHLLNRLLPPDIRILAW 292
Query: 107 SPVPE-KYSARFDCLFRNYKYWFPQAG-----------------------LDIDAMHKAA 142
P P +SARF C R YKY+F Q LDIDAM +AA
Sbjct: 293 CPAPPLGFSARFSCKERQYKYFFTQPAFAPPPENPNIKSTNKNTDVKDGWLDIDAMREAA 352
Query: 143 QYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA---------------GVTSAWQNVQFNDS 187
Y VG+HDFRN CK++ + NF R + A G S
Sbjct: 353 GYFVGSHDFRNFCKIDGSKQIENFERTMFFADILEVDDTTPTLDFVGKKEFLPAASITGS 412
Query: 188 HHNICE----FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
I F + FLWHQ+RC++++LFLVGQG EKP II++L+D+E+ P +P Y M
Sbjct: 413 SEQISPKVYTFTLHGSAFLWHQVRCMVAILFLVGQGLEKPTIIKELLDVERNPSRPAYEM 472
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLH 276
+ PL L+ F H D+ + ++ LH
Sbjct: 473 AQDSPLVLWDCVFP----HEDDPSRENAIQWLH 501
>gi|189193015|ref|XP_001932846.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187978410|gb|EDU45036.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 599
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 169/381 (44%), Gaps = 108/381 (28%)
Query: 2 RPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLIE--------------- 43
R IALK Y G Y+GF+ T+ TI L KAL KT LI
Sbjct: 78 RLIALKFAYLGQKYNGFEHHKNNTTPLPTIEEELWKALVKTRLITPIPTAGGETESYERI 137
Query: 44 --------DKEKS-------SFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESD----- 83
D+E + ++ CGRTD GVSAF QV+ +++RS P
Sbjct: 138 DRKTFARWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKAPQSPEETP 197
Query: 84 --------------------------DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSAR 116
+ELPY+++LN LP DI+V AW P P +SAR
Sbjct: 198 ETNEEESPPSSPSSDSKPPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNPPADFSAR 257
Query: 117 FDCLFRNYKYWF---------------------PQA----GLDIDAMHKAAQYLVGTHDF 151
F C R YKY+F PQA LDI+AM + +LVG HDF
Sbjct: 258 FSCKERRYKYFFTNPCFAPVPGSSGRYNTSSTPPQAMREGWLDINAMKQGCAHLVGLHDF 317
Query: 152 RNLCKMNVGNGVVNFRRLVTHAGVTSAWQ-NVQFNDSHHNIC-------------EFNIR 197
RN CK++ + NF+R + HA + +V SH + F +
Sbjct: 318 RNFCKIDASKQLTNFQRRIFHADIEEVSPLSVPAFLSHPALTAPGLPASEAPKLYSFTLH 377
Query: 198 SQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
FLWHQ+R +++VLFL+GQG E P+II QL+DIE P +P Y M PL L+ F
Sbjct: 378 GSAFLWHQVRSLIAVLFLIGQGLESPDIIPQLLDIEANPTRPKYEMASDAPLVLWDCIFP 437
Query: 258 NLTWHYDEIEVSHVLRDLHED 278
H DE++ S + ++D
Sbjct: 438 ----HADEVQSSEERQHGYQD 454
>gi|388583265|gb|EIM23567.1| pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 434
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 155/304 (50%), Gaps = 50/304 (16%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IA+K Y G+ Y+G Q + T+ L AL K L++ E + ++ CGRT
Sbjct: 20 RKIAIKFSYAGWAYNGLAAQGTPTPLPTVEQTLWDALAKGRLVDSTKSFESAGWSRCGRT 79
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDN---------------------ELPYLKMLNN 95
D GVS+ QVV L +RS T + S E +L++LN+
Sbjct: 80 DKGVSSAGQVVALWVRSAYTPENKPSSIEAFKGPSQAKPIKLTKDQQALVEYNFLQILNS 139
Query: 96 NLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP------QAGLDIDAMHKAAQYLVGTH 149
LP I+++AWSPV + ARFDC R+YKY+F GLDI M+ A + + G H
Sbjct: 140 LLPPTIRILAWSPVKNSFDARFDCKERHYKYYFDIKESPLGPGLDIHLMNGALELIKGEH 199
Query: 150 DFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCI 209
DFRN CK++ + NF H + AW + ++ N+ N+R FL+HQ+RCI
Sbjct: 200 DFRNFCKVDASKQIKNF-----HRRINDAW--IDPPEAGSNLHCVNLRGSAFLYHQVRCI 252
Query: 210 MSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLN---------LYHTEFD--N 258
M+VLFLVG G EK EII L+ ++ + P P+V G+PL LY FD +
Sbjct: 253 MAVLFLVGCGREKVEIINDLMRVKPDDKDPSLPVVEGKPLYDMANDLPLCLYDCVFDERS 312
Query: 259 LTWH 262
L+W
Sbjct: 313 LSWR 316
>gi|402076494|gb|EJT71917.1| tRNA-pseudouridine synthase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 672
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 160/369 (43%), Gaps = 116/369 (31%)
Query: 4 IALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--------EDKEKSSFACCG 54
IALK+ Y G NY+GF+ Q + TI L KAL KTCL+ D ++ CG
Sbjct: 120 IALKLAYLGGNYNGFEYQANGKLPTIEEELWKALVKTCLVFPERGPDEVDFASCEYSKCG 179
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSP------------------------------------ 78
RTD GVSAF QVV L++RS P
Sbjct: 180 RTDRGVSAFGQVVALRVRSNRPVPRARKQQQQQHAAGSSAEAGDGAAVAAAAELEAPEAT 239
Query: 79 GEESD-------------------DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFD 118
GEE +E+ Y K+LN LP DI+ +AW P P +SARF
Sbjct: 240 GEEGRRQEDDDDDDDDSDETPYPVADEIKYCKLLNRTLPPDIRALAWCPTPPPGFSARFS 299
Query: 119 CLFRNYKYWFPQAG-----------------------------LDIDAMHKAAQYLVGTH 149
C R Y+Y+F Q L I+AM +AA++ G+H
Sbjct: 300 CRERQYRYFFTQPAFAPAPAVLEGAHHPSSSAGSGGRRVKDGYLGIEAMREAARHFEGSH 359
Query: 150 DFRNLCKMNVGNGVVNFRRLVTHAGV------TSAW----------------QNVQFNDS 187
DFRN CK++ + NF R V A + TSA ++ +
Sbjct: 360 DFRNFCKIDASKQIGNFERRVLEADIVEVPDTTSALPYLDRPEFLPGQDGNGDSLAVDPP 419
Query: 188 HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGE 247
+ F++R FLWHQIR +++VLFLVGQG EKP ++ L+D+ +YP +P Y +
Sbjct: 420 RPRVYYFHVRGTAFLWHQIRHMVAVLFLVGQGLEKPSVVADLLDVSRYPGRPNYHLASDA 479
Query: 248 PLNLYHTEF 256
PL L+ F
Sbjct: 480 PLVLWDCLF 488
>gi|238489663|ref|XP_002376069.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357]
gi|220698457|gb|EED54797.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357]
Length = 656
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 166/381 (43%), Gaps = 121/381 (31%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI--EDKEKSSF-------- 50
IALK Y G Y+G + + TI + KAL+KT LI E+ E F
Sbjct: 150 IALKFAYLGQRYNGLEHANGNVTPLPTIEEEMWKALRKTRLIFPENGEADGFEDTRGPRE 209
Query: 51 -------------ACCGRTDSGVSAFCQVVTLKIRSK----------------LTSPGEE 81
+ GRTD GVSAF QV+ L++RS GEE
Sbjct: 210 LKPYLINWEGCQYSKAGRTDRGVSAFGQVIGLRVRSARPKRDDVAQADPSSDTTMQTGEE 269
Query: 82 S-----------DD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYW 127
+ DD +ELPY+ +LN LP DI+V+AW P PE + ARF C R+YKY+
Sbjct: 270 ASALDDAAQDNWDDIADELPYVSILNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYKYF 329
Query: 128 FPQAG-----------------------------LDIDAMHKAAQYLVGTHDFRNLCKMN 158
F Q LDI+AM +AA+Y G HDFRN CK++
Sbjct: 330 FTQPAFSPTPGPLGFTSRANNKAGDSRAKYREGWLDIEAMREAAKYFEGVHDFRNFCKLD 389
Query: 159 VGNGVVNFRRLVTHAGV--------------TSAWQNVQFNDSHH-------------NI 191
+ NF R++ H+ + +Q ++ + +
Sbjct: 390 TSKQIENFERVIYHSDIELLDPRSSPLGYVSQPGFQALEDPAAQQTPGSPESPSPTPSQV 449
Query: 192 CEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNL 251
FN+R FLWHQ+R ++ +LFLVGQG E P I+ L+DI K PRKP Y M PL L
Sbjct: 450 YVFNLRGSAFLWHQVRHMVGILFLVGQGLEPPTIVPDLLDITKNPRKPTYEMASDAPLVL 509
Query: 252 YHTEF---------DNLTWHY 263
++ F D L W Y
Sbjct: 510 WNCVFPDENSGSREDALDWVY 530
>gi|327307008|ref|XP_003238195.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
gi|326458451|gb|EGD83904.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
Length = 614
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 168/391 (42%), Gaps = 131/391 (33%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI-------------EDK 45
R IA+K Y G Y+G + + TI L KAL+KT LI +D
Sbjct: 91 RHIAIKFAYLGKRYNGLEHANGNYTEVPTIEEELWKALRKTRLIFPTHKDCTEEFSGKDN 150
Query: 46 EKS----------SFACCGRTDSGVSAFCQVVTLKIRS---------------------- 73
S ++ CGRTD GVSAF QV+ +++RS
Sbjct: 151 SPSRPYAIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPAEPNPPVELKGGDVVNSVV 210
Query: 74 -------------KLTSPGEES--DD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSA 115
++ GE DD +ELPY+++LN LP DI+V+AW P +P + A
Sbjct: 211 ATESGMGDKNTQSGVSDTGEAKGWDDIADELPYIQILNGALPEDIRVLAWCPHLPPDFDA 270
Query: 116 RFDCLFRNYKYWFPQAG-----------------------------LDIDAMHKAAQYLV 146
RF C R Y+Y+F Q LDI+AM KAAQY V
Sbjct: 271 RFSCRQRRYRYFFTQPAFCPTPGTRGIVRSPELKDDLSLARPREGWLDIEAMRKAAQYFV 330
Query: 147 GTHDFRNLCKMNVGNGVVNFRRLVTHA------------------------------GVT 176
G+HDFRN CK++ + NF R + A GV
Sbjct: 331 GSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGPRNTGVP 390
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+ ++ N + + F + FLWHQIR ++ +LFLVGQG E P I+ +L+D+ K P
Sbjct: 391 GSINDI--NSAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNP 448
Query: 237 RKPVYPMVRGEPLNLYHTEF----DNLTWHY 263
R+PVY M PL L+ F D L W Y
Sbjct: 449 RRPVYEMASDSPLVLWDCIFGEEEDELDWVY 479
>gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
Length = 455
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 146/261 (55%), Gaps = 18/261 (6%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IALK Y G+++ G IQ T+ L AL + L++ K E + CGRT
Sbjct: 79 RKIALKFCYGGWDFGGLAIQKDRTPLPTVEGKLFGALVRARLVDPKGGLEGCGWERCGRT 138
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEE-----SDDNELPYLKMLNNNLPRDIKVVAWSPVPE 111
D GVSA QV++L +RS L+ EE + E P++ M+N +LP IK++AWSPV
Sbjct: 139 DRGVSAAGQVISLWVRSALSQ--EELTPTATPTEEHPFIYMINRHLPDTIKILAWSPVDP 196
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+S+R+ C +R+YKY+F GLD+ AM A YL GTHDFRNLCK++ + FRR +
Sbjct: 197 SFSSRYSCTWRHYKYFFSPVGLDVAAMRAACAYLPGTHDFRNLCKIDPTKQLDQFRRDIL 256
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
HA ++ + N ++ F+++ FL+H +R IM VL +G E P ++ L++
Sbjct: 257 HASISPVDAS---NPGGMHV--FDLKGSSFLYHMVRNIMGVLLSIGARLEPPTLLPALMN 311
Query: 232 IEKYPRKPVYPMVRGEPLNLY 252
+ R P Y M PL L+
Sbjct: 312 VAPGCR-PEYMMADALPLTLW 331
>gi|326474345|gb|EGD98354.1| pseudouridylate synthase [Trichophyton tonsurans CBS 112818]
Length = 614
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 165/389 (42%), Gaps = 127/389 (32%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKS---------- 48
R IA+K Y G Y+G + + TI L KAL+KT LI K+
Sbjct: 91 RHIAIKFAYLGKRYNGLEHANGNYTEVPTIEEELWKALRKTRLIFPTHKNCTEEFSGKDN 150
Query: 49 -------------SFACCGRTDSGVSAFCQVVTLKIRS-KLTSPGEESD----------- 83
++ CGRTD GVSAF QV+ +++RS + P +D
Sbjct: 151 SPSRPYEIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPADPNPSADLKGGDVMDSVV 210
Query: 84 ---------------------------DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSA 115
+ELPY+++LN LP DI+V+AW P +P + A
Sbjct: 211 ATESGMADKNTQNGVSDTGAAKGWDDIADELPYIQILNGALPEDIRVLAWCPHLPPDFDA 270
Query: 116 RFDCLFRNYKYWFPQAG-----------------------------LDIDAMHKAAQYLV 146
RF C R Y+Y+F Q LDI+AM +AAQY V
Sbjct: 271 RFSCRQRRYRYFFTQPAFCPTPGARGIVRSPELKDDLSLARPREGWLDIEAMREAAQYFV 330
Query: 147 GTHDFRNLCKMNVGNGVVNFRRLVTHAGV---------------------------TSAW 179
G+HDFRN CK++ + NF R + A + T
Sbjct: 331 GSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGPRNTGVP 390
Query: 180 QNVQ-FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
++V N + + F + FLWHQIR ++ +LFLVGQG E P I+ +L+D+ K PR+
Sbjct: 391 ESVNDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPRR 450
Query: 239 PVYPMVRGEPLNL----YHTEFDNLTWHY 263
PVY M PL L + E D L W Y
Sbjct: 451 PVYEMASDSPLVLWDCIFGEEEDELDWVY 479
>gi|195370371|ref|XP_002045883.1| GM20625 [Drosophila sechellia]
gi|194121623|gb|EDW43666.1| GM20625 [Drosophila sechellia]
Length = 248
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 120/186 (64%), Gaps = 8/186 (4%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LKI Y G++Y GF Q S++TI +L +AL +TCLIE + S++ CGRTD VS
Sbjct: 48 RHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVS 107
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----NELPYLKMLNNNLPRDIKVVAWSPVPEK-YSA 115
AFCQV+++ +RSK P E D +E+ Y +LN LP++I+ VAW P+ YSA
Sbjct: 108 AFCQVISIDLRSK--HPPESQLDPTSLSSEIDYCGLLNRVLPKNIQCVAWMPLRSSVYSA 165
Query: 116 RFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
RFDC+ R+Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V
Sbjct: 166 RFDCVSRSYRYFFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARV 225
Query: 176 TSAWQN 181
+ +N
Sbjct: 226 EACDEN 231
>gi|302656723|ref|XP_003020113.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517]
gi|291183894|gb|EFE39489.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517]
Length = 614
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 166/389 (42%), Gaps = 127/389 (32%)
Query: 2 RPIALKILYQGFNYHGFQIQT---SSDNTIAHHLLKALQKTCLI-------------EDK 45
R IA+K Y G Y+G + + TI L KAL+KT LI +D
Sbjct: 91 RHIAIKFAYLGKRYNGLEHANGNYTEAPTIEEELWKALRKTHLIFPTHKDCTEEFSGKDN 150
Query: 46 EKS----------SFACCGRTDSGVSAFCQVVTLKIRS-KLTSPGEESD----------- 83
S ++ CGRTD GVSAF QV+ +++RS + P +D
Sbjct: 151 SPSRPYAIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPADPNPPADLEEGDVMDSDV 210
Query: 84 ---------------------------DNELPYLKMLNNNLPRDIKVVAWSP-VPEKYSA 115
+ELPY+++LN LP DI+V+AW P +P + A
Sbjct: 211 ATESGMGDRNTQSGVSDTGEAKGWDDIADELPYIQILNGALPEDIRVLAWCPHLPPDFDA 270
Query: 116 RFDCLFRNYKYWFPQAG-----------------------------LDIDAMHKAAQYLV 146
RF C R Y+Y+F Q LDI+AM +AAQY V
Sbjct: 271 RFSCRQRRYRYFFTQPAFCPTPGARGIVRSSELKDDLSLARLREGWLDIEAMREAAQYFV 330
Query: 147 GTHDFRNLCKMNVGNGVVNFRRLVTHAGV---------------------------TSAW 179
G+HDFRN CK++ + NF R + A + T
Sbjct: 331 GSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGPRNTGVP 390
Query: 180 QNVQ-FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+++ N + + F + FLWHQIR ++ +LFLVGQG E P I+ +L+D+ K PR+
Sbjct: 391 ESIDDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPRR 450
Query: 239 PVYPMVRGEPLNL----YHTEFDNLTWHY 263
PVY M PL L + E D L W Y
Sbjct: 451 PVYEMASDSPLVLWDCIFGEEEDELDWVY 479
>gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
Length = 296
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 146/260 (56%), Gaps = 15/260 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IALK Y G++Y G IQ T+ L AL + L++ K E + CGRT
Sbjct: 46 RKIALKFCYGGWDYGGLAIQKDRTPLPTVEGKLFGALVRARLVDPKGGLEGCGWERCGRT 105
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
D GVSA QV++L +RS L+ + + P+ M+N +LP IK++AWSPV +S+R
Sbjct: 106 DRGVSAAGQVISLWVRSALS----QEELLPHPFTYMINRHLPDPIKILAWSPVDLSFSSR 161
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
+ C +R+YKY+FP GLDI AM A YL GTH+FRNLCK++ + FRR + HA ++
Sbjct: 162 YSCTWRHYKYFFPPVGLDIPAMRAACAYLPGTHEFRNLCKIDPTKQLDQFRRDILHASIS 221
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+V ++ + F+++ FL+H +R IM VL +G E P ++ L+++
Sbjct: 222 ----HVDASNP-GGMHVFDLKGSSFLYHMVRNIMGVLLSIGARLEPPTLLPSLMNVAPGC 276
Query: 237 RKPVYPMVRGEPLNLYHTEF 256
R P Y M PL L+ +
Sbjct: 277 R-PEYMMADALPLTLWDCGY 295
>gi|340515588|gb|EGR45841.1| hypothetical protein TRIREDRAFT_80941 [Trichoderma reesei QM6a]
Length = 604
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 170/402 (42%), Gaps = 140/402 (34%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLI--EDKEKSSFACC----- 53
R IALK+ Y G N+ GF+ Q + +I L AL K CLI ED+ F CC
Sbjct: 71 RYIALKLAYLGKNFGGFEFQAMGNQPSIEEELWNALTKACLIFPEDERIVDFECCEYSKC 130
Query: 54 GRTDSGVSAFCQVVTLKIRSKLTSP-----GEESDDNE---------------------- 86
GRTD GVSAF QV+ L++RS P G E D E
Sbjct: 131 GRTDRGVSAFGQVIGLRVRSNRPLPKKPVEGAEEMDVEQTGPLASASAEQETQPQQDKDD 190
Query: 87 ----------------------------LPYLKMLNNNLPRDIKVVAWSPVPEK-YSARF 117
+PY +LN LP++I+++AW P P +SARF
Sbjct: 191 DNKAKAKAKAKAKKQPEPTRPFDDIRDEIPYPHVLNRLLPKEIRILAWCPSPPPGFSARF 250
Query: 118 DCLFRNYKYWFPQAG--------------------------------LDIDAMHKAAQYL 145
C R Y+Y+F Q LDIDAM AA+
Sbjct: 251 SCRERQYRYFFTQPAFAPAPSHVDNTAAAAAATGQGGANGKAVKSGWLDIDAMRDAAKRY 310
Query: 146 VGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS----------------AWQNVQFNDS-- 187
G HDFRNLCK++ + NF+R + + + A +N++ DS
Sbjct: 311 EGEHDFRNLCKIDPAKQITNFKRRMFESDIVEVEDAASALPYLQAAGFAPENLEALDSSS 370
Query: 188 ------------HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ + F++R FLWHQIR +++VLFLVGQG EKP ++ +L+D++K
Sbjct: 371 SSSSASGARKGMYPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLEKPSVVSELLDVDKN 430
Query: 236 PRKPVYPMVRGEPLNLY--------------HTEFDNLTWHY 263
PR+P Y M PL L+ H E D L W Y
Sbjct: 431 PRRPNYVMADEVPLVLWDCIFPSDLSASTAAHREDDALRWVY 472
>gi|315055729|ref|XP_003177239.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893]
gi|311339085|gb|EFQ98287.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893]
Length = 616
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 168/393 (42%), Gaps = 133/393 (33%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI-------------EDK 45
R IA+K Y G Y+G + + TI L KAL+KT LI +D
Sbjct: 91 RHIAIKFAYLGKRYNGLEHANGNFTEVPTIEEELWKALRKTRLIFPTHKDCTEEFSGKDS 150
Query: 46 EKS----------SFACCGRTDSGVSAFCQVVTLKIRS---KLTSPGEES---------- 82
S ++ CGRTD GVSAF QV+ +++RS +SP E+
Sbjct: 151 SPSRPYSIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPADSSPPTEANGGDAMDSAV 210
Query: 83 --------------------------DD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKY 113
DD +ELPY+++LN LP DI+V+AW P +P +
Sbjct: 211 AVELGTGDENRRSGVPGTGEAKAAVWDDIADELPYIQILNGALPEDIRVLAWCPHLPADF 270
Query: 114 SARFDCLFRNYKYWFPQAG-----------------------------LDIDAMHKAAQY 144
ARF C R Y+Y+F Q LDI+AM +AAQY
Sbjct: 271 DARFSCRQRRYRYFFTQPAFCPTPGARGIVRAPELKDDPSSPRPREGWLDIEAMREAAQY 330
Query: 145 LVGTHDFRNLCKMNVGNGVVNFRRLVTHA------------------------------G 174
VG+HDFRN CK++ + NF R + A G
Sbjct: 331 FVGSHDFRNFCKVDTSKQITNFVRRILRADLELVDPQRTPLGFVQMPGFERLENSPRNTG 390
Query: 175 VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+ ++ N + + F + FLWHQIR ++ +LFLVGQG E P I+ +L+D+ K
Sbjct: 391 IPEGPNDI--NPAASKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTK 448
Query: 235 YPRKPVYPMVRGEPLNL----YHTEFDNLTWHY 263
PR+PVY M PL L + E D L W Y
Sbjct: 449 NPRRPVYEMASDSPLVLWDCIFGEEEDELDWVY 481
>gi|392870780|gb|EAS32613.2| tRNA pseudouridine(38-40) synthase [Coccidioides immitis RS]
Length = 614
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 167/385 (43%), Gaps = 125/385 (32%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDK--------------- 45
IALK Y G Y+G++ + TI L KAL+K+ LI K
Sbjct: 100 IALKFAYLGQRYNGYEHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNRL 159
Query: 46 --------EKSSFACCGRTDSGVSAFCQVVTLKIRS----------------------KL 75
E ++ CGRTD GVSAF QVV +++RS +
Sbjct: 160 LRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDTPSSVTPV 219
Query: 76 TSP------------GEES-DD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDC 119
SP EE+ DD +ELPY++MLN LP DI+++AW P P + ARF C
Sbjct: 220 ESPLGGLDIDVSDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARFSC 279
Query: 120 LFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVGTHDFRN 153
R Y+Y+F Q LDIDAM + A+ +G+HDFRN
Sbjct: 280 RERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDFRN 339
Query: 154 LCKMNVGNGVVNFRRLVTHAGVT----------------------SAWQNVQFNDSHH-- 189
CK++ + NF R ++HA + Q + SH+
Sbjct: 340 FCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAASGSHNAA 399
Query: 190 -NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEP 248
+ F++ FLWHQ+R ++ +LFL+GQG E P I+ +L+D+ K PR+P Y + P
Sbjct: 400 LKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASDAP 459
Query: 249 LNLYHTEF----------DNLTWHY 263
L L+ F D L W Y
Sbjct: 460 LVLWDCVFPGPKSEEEGRDGLDWVY 484
>gi|242215757|ref|XP_002473691.1| predicted protein [Postia placenta Mad-698-R]
gi|220727176|gb|EED81103.1| predicted protein [Postia placenta Mad-698-R]
Length = 495
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 141/293 (48%), Gaps = 53/293 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IALK Y G +Y G + Q + T+ L AL T LI+ E + CGRT
Sbjct: 48 RKIALKFTYNGADYSGLEFQKTPTTLPTVEAVLFDALVHTRLIDPATGFEGCGWEKCGRT 107
Query: 57 DSGVSAFCQVVTLKIRSKL---------------------------------------TS 77
D GVSA QV++L +RS L
Sbjct: 108 DRGVSAAGQVISLWVRSALGQARVRTSLEDANVMDVHPTGLEGDLALMGEWDETPTNAAR 167
Query: 78 PGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA 137
P NEL Y+ +LNN LP I+V+AWSPV +SARF C +R+YKY+F GLD+ A
Sbjct: 168 PATPQATNELRYITLLNNVLPPTIRVIAWSPVGPDFSARFSCRYRHYKYFFSPEGLDLAA 227
Query: 138 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIR 197
M AA LVG HDFRNLCK++ + F R + SA N D + ++
Sbjct: 228 MQDAADRLVGEHDFRNLCKLDPSKQLTTFAR-----KILSARLNPAQADGASTLYVLDLI 282
Query: 198 SQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY-PRKPVYPMVRGEPL 249
FL++Q+R IM+VLFLVG E P +I L++++ PR P P GEP
Sbjct: 283 GTAFLYNQVRHIMAVLFLVGTKLEHPSVIDALLNVDAAQPRAPSRP---GEPF 332
>gi|119186911|ref|XP_001244062.1| hypothetical protein CIMG_03503 [Coccidioides immitis RS]
Length = 537
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 166/385 (43%), Gaps = 125/385 (32%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDK--------------- 45
IALK Y G Y+G++ + TI L KAL+K+ LI K
Sbjct: 100 IALKFAYLGQRYNGYEHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNRL 159
Query: 46 --------EKSSFACCGRTDSGVSAFCQVVTLKIRS----------------------KL 75
E ++ CGRTD GVSAF QVV +++RS +
Sbjct: 160 LRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDTPSSVTPV 219
Query: 76 TSP------------GEESDDN---ELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDC 119
SP EE+ D+ ELPY++MLN LP DI+++AW P P + ARF C
Sbjct: 220 ESPLGGLDIDVSDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARFSC 279
Query: 120 LFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVGTHDFRN 153
R Y+Y+F Q LDIDAM + A+ +G+HDFRN
Sbjct: 280 RERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDFRN 339
Query: 154 LCKMNVGNGVVNFRRLVTHAGVT----------------------SAWQNVQFNDSHH-- 189
CK++ + NF R ++HA + Q + SH+
Sbjct: 340 FCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAASGSHNAA 399
Query: 190 -NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEP 248
+ F++ FLWHQ+R ++ +LFL+GQG E P I+ +L+D+ K PR+P Y + P
Sbjct: 400 LKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASDAP 459
Query: 249 LNLYHTEF----------DNLTWHY 263
L L+ F D L W Y
Sbjct: 460 LVLWDCVFPGPKSEEEGRDGLDWVY 484
>gi|392572819|gb|EIW65963.1| hypothetical protein TREMEDRAFT_35686 [Tremella mesenterica DSM
1558]
Length = 472
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 153/328 (46%), Gaps = 75/328 (22%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN-------TIAHHLLKALQKTCLIEDK---EKSSFA 51
R IAL Y G+ Y G Q T+ LLKAL+KT L+ E +
Sbjct: 31 RHIALLFAYNGWPYSGVAYQLPPAQQAKDPLPTVEGELLKALEKTRLVRPNVGLEGCGYG 90
Query: 52 CCGRTDSGVSAFCQVVTLKIRS------------------------KLTSPGEESD---- 83
CGRTD GVS+ QV +L +RS LT EE++
Sbjct: 91 RCGRTDRGVSSAGQVASLWVRSVRKDGVKLGAWKESSNHSSSTLESNLTRLNEETEKVRN 150
Query: 84 ------------DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF--- 128
+ EL Y ++LN+ LP I+V+AW+PV E + +RF C +R+YKY F
Sbjct: 151 ESSKRIKSKTTKEEELSYPRLLNSVLPPSIRVLAWAPVEEDFDSRFSCEYRHYKYIFHRK 210
Query: 129 ------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
P LDI M AAQ L+GTHDFRN CK++ +++ R + A
Sbjct: 211 IPGFHSTPNKHPPSRELDIPLMTLAAQSLIGTHDFRNFCKLDGSKQLLSHVRRILQA--- 267
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
F S + FN+ FLWHQ+R I+++LFL+G E P ++ L+D+EK+P
Sbjct: 268 ------YFEPSSPDTIVFNLIGTAFLWHQVRHIVAILFLIGSHLESPTLVSNLLDVEKFP 321
Query: 237 RKPVYPMVRGEPLNLYHTEFD-NLTWHY 263
+P Y M PL L+ ++D W Y
Sbjct: 322 ARPNYAMAHPLPLTLWECKYDPEPDWRY 349
>gi|320038677|gb|EFW20612.1| pseudouridylate synthase 3 [Coccidioides posadasii str. Silveira]
Length = 588
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 164/385 (42%), Gaps = 125/385 (32%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDK--------------- 45
IALK Y G Y+G++ + TI L KAL+K+ LI K
Sbjct: 100 IALKFAYLGQRYNGYEHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNRL 159
Query: 46 --------EKSSFACCGRTDSGVSAFCQVVTLKIRSKL---------------------- 75
E ++ CGRTD GVSAF QVV +++RS
Sbjct: 160 LRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDIPSSVTPV 219
Query: 76 -TSPG------------EESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDC 119
+ PG E DD +ELPY++MLN LP DI+++AW P P + ARF C
Sbjct: 220 ESPPGGLDIDVCDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARFSC 279
Query: 120 LFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVGTHDFRN 153
R Y+Y+F Q LDIDAM + A+ +G+HDFRN
Sbjct: 280 RERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDFRN 339
Query: 154 LCKMNVGNGVVNFRRLVTHAGVT---------------------SAWQNVQFNDSHHN-- 190
CK++ + NF R ++HA + Q + HN
Sbjct: 340 FCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAASGGHNAA 399
Query: 191 --ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEP 248
+ F++ FLWHQ+R ++ +LFL+GQG E P I+ +L+D+ K PR+P Y + P
Sbjct: 400 LKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASDAP 459
Query: 249 LNLYHTEF----------DNLTWHY 263
L L+ F D L W Y
Sbjct: 460 LVLWDCVFPGPKSEEEGRDGLDWVY 484
>gi|303317424|ref|XP_003068714.1| pseudouridylate synthase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108395|gb|EER26569.1| pseudouridylate synthase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 610
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 166/385 (43%), Gaps = 125/385 (32%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDK--------------- 45
IALK Y G Y+G++ + TI L KAL+K+ LI K
Sbjct: 96 IALKFAYLGQRYNGYEHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNRL 155
Query: 46 --------EKSSFACCGRTDSGVSAFCQVVTLKIRS----------------------KL 75
E ++ CGRTD GVSAF QVV +++RS +
Sbjct: 156 LRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDIPSSVTPV 215
Query: 76 TSP------------GEESDDN---ELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDC 119
SP EE+ D+ ELPY++MLN LP DI+++AW P P + ARF C
Sbjct: 216 ESPLGGLDIDVCDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARFSC 275
Query: 120 LFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVGTHDFRN 153
R Y+Y+F Q LDIDAM + A+ +G+HDFRN
Sbjct: 276 RERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDFRN 335
Query: 154 LCKMNVGNGVVNFRRLVTHAGVTS-----------AWQNVQ----------FNDSHHN-- 190
CK++ + NF R ++HA + A Q Q HN
Sbjct: 336 FCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHLGQQERAASGGHNAA 395
Query: 191 --ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEP 248
+ F++ FLWHQ+R ++ +LFL+GQG E P I+ +L+D+ K PR+P Y + P
Sbjct: 396 LKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASDAP 455
Query: 249 LNLYHTEF----------DNLTWHY 263
L L+ F D L W Y
Sbjct: 456 LVLWDCVFPGPKSEEEGRDGLDWVY 480
>gi|164659606|ref|XP_001730927.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966]
gi|159104825|gb|EDP43713.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966]
Length = 604
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 143/276 (51%), Gaps = 46/276 (16%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKS----SFACCG 54
R IAL+ Y G +Y G Q T+ + +AL L+ D KS ++ CG
Sbjct: 80 RKIALRFCYDGGSYSGLAAQMGQMTPLPTVEETIWEALCTARLV-DATKSMDDVDWSRCG 138
Query: 55 RTDSGVSAFCQVVTLKIRSKLTS-------------PGEESDDNELPYLKMLNNNLPRDI 101
RTD+GVSA QVV L IRS+ P ++ D ELPY+ LN LP I
Sbjct: 139 RTDAGVSAAGQVVALWIRSRCVDERPLRYKTGEAAIPLTDTSDEELPYVATLNRLLPPTI 198
Query: 102 KVVAWSPVPEKYSARFDCLFRNYKY-----------WFPQA------GLDIDAMHKAAQY 144
++ AWSPV +SARFDC++R+YKY W P++ LD+D M AA
Sbjct: 199 RIQAWSPVRPTFSARFDCVYRHYKYFFTLGAPSTLVWQPESLSQFSGRLDLDRMRDAAAR 258
Query: 145 LVGTHDFRNLCKMNVGNGVVNFRRLVTHAG---VTSAWQN--VQFNDSHHN---ICEFNI 196
LVG HDFRN+CK++ + NFRR + A V W + + D H + N+
Sbjct: 259 LVGEHDFRNMCKVDASKQITNFRRRIDGASIDPVCRGWSDRPIPAPDPHSTDEPMYVLNL 318
Query: 197 RSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
R FL+HQ+R IM+VLF+VG E P I+ +L+++
Sbjct: 319 RGSAFLYHQVRHIMAVLFMVGARLEDPSIVDELLNV 354
>gi|395326839|gb|EJF59244.1| tRNA pseudouridine synthase [Dichomitus squalens LYAD-421 SS1]
Length = 516
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 149/307 (48%), Gaps = 72/307 (23%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFAC----CGRT 56
R IALK Y G +Y G + Q T+ L AL T L+ D++ C CGRT
Sbjct: 63 RKIALKFTYNGIHYGGMEFQRDPALPTVEGVLFDALVHTKLV-DRDGGLEGCDWQRCGRT 121
Query: 57 DSGVSAFCQVVTLKIRSKLTS-------------------------------PGEESD-- 83
D GVSA QVV+L +RS L S PG E D
Sbjct: 122 DKGVSAGGQVVSLWVRSNLGSKTAAEIEEDVANAEPSTTTEQLPTSAEDAEGPGLEGDFG 181
Query: 84 -----------------------DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+ E PY+ LN+ LP I+V+AWSPV + +SARF C
Sbjct: 182 LMGDLADEGPTNGSMHAQPPPQAELEFPYVFALNHILPPTIRVLAWSPVADDFSARFSCR 241
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
+R+YKY+F +GLD+ AM AA L+G HDFRNLCK++ + F R + HA + A +
Sbjct: 242 WRHYKYFFSPSGLDLAAMQDAASRLLGEHDFRNLCKIDASKQITVFTRRILHASIDRADK 301
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
+ FN+R FL++ +R IM++LFLVG G E+P I+ L++ + P +P+
Sbjct: 302 G--------ELYVFNLRGNAFLYNMVRHIMAILFLVGSGLERPSIMSALLNAD--PARPL 351
Query: 241 YPMVRGE 247
P GE
Sbjct: 352 PPFREGE 358
>gi|258563566|ref|XP_002582528.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908035|gb|EEP82436.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 615
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 168/388 (43%), Gaps = 128/388 (32%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI--------EDKEKSS--- 49
IALK Y G Y+G++ + TI L KAL+K LI E+ ++S
Sbjct: 98 IALKFAYLGQRYNGYEHANGNITPLPTIEEELWKALRKARLIFPHIVENSENVDESGSRS 157
Query: 50 -------------FACCGRTDSGVSAFCQVVTLKIRS---------------------KL 75
++ CGRTD GVSAF QVV +++RS KL
Sbjct: 158 LSRPYSISWEGCDYSKCGRTDRGVSAFGQVVGVRVRSSRPKKTVEPVATPDTSTSVTPKL 217
Query: 76 TSPGEES------------------DD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYS 114
S ES DD +ELPY++MLN LP DI+++AW P P +
Sbjct: 218 ISKDVESPFGGLGIDVSELEVEEKWDDVADELPYIQMLNGVLPEDIRILAWCPRPPPDFD 277
Query: 115 ARFDCLFRNYKYWFPQAG--------------------------LDIDAMHKAAQYLVGT 148
ARF C R Y+Y+F Q LDIDAM + A+ +G+
Sbjct: 278 ARFSCRERRYRYFFTQPAFCPTPGPLGFVKRPGDTPGSKMREGWLDIDAMREGAKRYIGS 337
Query: 149 HDFRNLCKMNVGNGVVNFRRLVTHAGVT-----------------SAWQNVQ-------- 183
HDFRN CK++ + NF R ++HA + ++NV
Sbjct: 338 HDFRNFCKVDASKQITNFVRKISHADIQVLDAKNLPPAFLAQQGFQQYENVDRELRDSSD 397
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
D + F++ FLWHQ+R +++VLFL+GQG E P I+ QL+D+ PR+P Y +
Sbjct: 398 VQDPALKVYYFSVHGSAFLWHQVRHMVAVLFLIGQGLEPPSIVSQLLDVSTNPRRPTYDI 457
Query: 244 VRGEPLNLYHTEF--------DNLTWHY 263
PL L+ F D L W Y
Sbjct: 458 ASDAPLVLWDCVFPKNGDENEDGLDWVY 485
>gi|194696534|gb|ACF82351.1| unknown [Zea mays]
Length = 257
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 85 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 144
+E+ Y+K+LN LPRDI+V+ W PVP + ARF CL R YKY F + LDI M KAA
Sbjct: 6 SEIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLFWKGDLDILEMQKAASK 65
Query: 145 LVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWH 204
+G HDFRN CKM+ N V N+RR +T + SA ND +C I+ FLWH
Sbjct: 66 FIGEHDFRNFCKMDAAN-VSNYRRHITEFTI-SACDRRSNND---ELCSMTIKGSAFLWH 120
Query: 205 QIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
Q+RC+++VLFL+GQG E P ++ L+DI K RKP Y M PL L FD +
Sbjct: 121 QVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFDKANF 177
>gi|425781472|gb|EKV19436.1| Pseudouridylate synthase 3 [Penicillium digitatum Pd1]
Length = 616
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/432 (28%), Positives = 182/432 (42%), Gaps = 129/432 (29%)
Query: 4 IALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLIEDKEKSS----------- 49
IALK Y G Y+G + T+ T+ L KAL++T LI + S
Sbjct: 118 IALKFAYLGQAYNGLEHTNGNTTPLPTVEEILWKALRRTRLISPETTSDMEPTDREERVP 177
Query: 50 ------------FACCGRTDSGVSAFCQVVTLKIRSKLTSPG-----------------E 80
++ GRTD GVSAF QV+ L++RS+ P +
Sbjct: 178 MRPYHLHWDGCDYSKAGRTDKGVSAFGQVIGLRVRSQRPVPKTPAAGDDAMNVDSVSTEK 237
Query: 81 ESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF------PQA 131
E DD +E+ Y+ +LN LP DI+V+AW P P + ARF C R YKY+F P
Sbjct: 238 EWDDVADEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFTPTP 297
Query: 132 G----------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
G LDI+AM +AA++ G HDFRN CK++ + NF R+
Sbjct: 298 GSVGFQNRAQNGNGPRSELREGWLDIEAMREAAKHFEGLHDFRNFCKLDTNKQIDNFERI 357
Query: 170 VTHAGVTSAWQNVQFNDSHH-----------------------------NICEFNIRSQG 200
+ H+ + + N + N + + FN+
Sbjct: 358 IHHSSIEAV--NAKVNPVGYVGQPGFQAKEGCVPDPDLLSPDMISQNVPQVYTFNLHGSA 415
Query: 201 FLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---- 256
FLWHQ+R ++++LFLVGQG E P I+ +L+DI K PRKP Y M PL L+ F
Sbjct: 416 FLWHQVRHMVAILFLVGQGLESPSIVPELLDITKNPRKPTYSMADDAPLVLWDCIFPDLE 475
Query: 257 -----DNLTWHY---------------DEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDT 296
D+L W Y + + + L W I + G ++ T
Sbjct: 476 SGSHLDSLNWIYAGDSPVKGKGSAKGDSKFGMRGTVESLWTVWRKRKIDEILAGALLDLT 535
Query: 297 VRESKCTMGDLD 308
V + + D+D
Sbjct: 536 VSQGNQNVEDID 547
>gi|198429149|ref|XP_002129315.1| PREDICTED: similar to Pseudouridylate synthase 3 [Ciona
intestinalis]
Length = 510
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 153/308 (49%), Gaps = 46/308 (14%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSS---------DNTIAHHLLKALQKTCLIEDKEKS-SF 50
+R IALK+LY G++Y G+ SS N + LL+AL + LI +F
Sbjct: 100 VRRIALKVLYLGWDYVGYAFTKSSLAFSKPESISNVVERVLLEALLRQQLITGVGSVLNF 159
Query: 51 ACCGRTDSGVSAFCQVVTLKIRSKL-------------------TSPGEES--------- 82
GRTD VS QVV++ +RS L T P E
Sbjct: 160 DRAGRTDRQVSGLSQVVSVNVRSNLNKGHGVWYPKVEGSDNVGNTKPETEYFEDGFPVSD 219
Query: 83 ---DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMH 139
DD ELPY+ +LN LP DI+++AWSPV + +S R+ C R Y+Y F + +DI+ M+
Sbjct: 220 TTLDDGELPYVSLLNQALPPDIRILAWSPVKKTFSPRYQCRSRTYRYAFVRGSMDIELMN 279
Query: 140 KAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQ 199
+AAQ VG HD RN CK++ N + R + V + Q N +IC I ++
Sbjct: 280 EAAQKFVGRHDMRNFCKVSSENAYRTYVRTINSIKVE---EFNQTNLPECDICVATISAE 336
Query: 200 GFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD-- 257
+++ QIR +MS+L +G G P I +++D+EK P+KP + L L EFD
Sbjct: 337 SYVYKQIRRMMSILGRIGSGEIPPSTIDEMLDVEKNPKKPSFKSWTPLNLTLIDAEFDEE 396
Query: 258 NLTWHYDE 265
++ W + E
Sbjct: 397 DVHWRWGE 404
>gi|425778119|gb|EKV16263.1| Pseudouridylate synthase 3 [Penicillium digitatum PHI26]
Length = 616
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 165/372 (44%), Gaps = 114/372 (30%)
Query: 4 IALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLIEDKEKSS----------- 49
IALK Y G Y+G + T+ T+ L KAL++T LI + S
Sbjct: 118 IALKFAYLGQAYNGLEHTNGNTTPLPTVEEILWKALRRTRLISPETTSDMEPTDREERVP 177
Query: 50 ------------FACCGRTDSGVSAFCQVVTLKIRSKLTSPG-----------------E 80
++ GRTD GVSAF QV+ L++RS+ P +
Sbjct: 178 MRPYHLHWDGCDYSKAGRTDKGVSAFGQVIGLRVRSQRPVPKTPAAGDDAMNVDSVSTEK 237
Query: 81 ESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF------PQA 131
E DD +E+ Y+ +LN LP DI+V+AW P P + ARF C R YKY+F P
Sbjct: 238 EWDDVADEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFTPTP 297
Query: 132 G----------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
G LDI+AM +AA++ G HDFRN CK++ + NF R+
Sbjct: 298 GSVGFQNRAQNGNGPRSELREGWLDIEAMREAAKHFEGLHDFRNFCKLDTNKQIDNFERI 357
Query: 170 VTHAGVTSAWQNVQFNDSHH-----------------------------NICEFNIRSQG 200
+ H+ + + N + N + + FN+
Sbjct: 358 IHHSSIEAV--NAKVNPVGYVGQPGFQAKEGCVPDPDLLSPDMISQNVPQVYTFNLHGSA 415
Query: 201 FLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---- 256
FLWHQ+R ++++LFLVGQG E P I+ +L+DI K PRKP Y M PL L+ F
Sbjct: 416 FLWHQVRHMVAILFLVGQGLESPSIVPELLDITKNPRKPTYSMADDAPLVLWDCIFPDLE 475
Query: 257 -----DNLTWHY 263
D+L W Y
Sbjct: 476 SGSHLDSLNWIY 487
>gi|409075831|gb|EKM76207.1| hypothetical protein AGABI1DRAFT_108952 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 598
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 160/351 (45%), Gaps = 86/351 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSFAC----CGR 55
R IALK Y G+ Y G QT T+ L +A K LI D++ C CGR
Sbjct: 80 RKIALKFCYSGWEYGGLAYQTGPTQLPTVEAVLFEAFAKARLI-DRDGGMEGCGWEKCGR 138
Query: 56 TDSGVSAFCQVVTLKIRSK-----------------LTSPGEESDDN------------- 85
TD GVSA QV++L +RS L +P EE N
Sbjct: 139 TDKGVSAAGQVISLWLRSAVGSVEEEQGKGKGTEIGLVNPVEEGSTNQHQDSGVPGLSEE 198
Query: 86 -----------------------------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
EL Y+ +LN LP I+++AW+PV E +SAR
Sbjct: 199 DFGTLDLSELGSPIAATTILQDSSSKSRHELDYVGILNRLLPPTIRILAWAPVAENFSAR 258
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
F C +R+YKY+F LDI AM +AA +L+G HDFRNLCK++ + FRR + A +
Sbjct: 259 FSCKYRHYKYFFSSHLLDISAMREAATHLIGEHDFRNLCKVDAQKQITMFRRNILRADIE 318
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD----- 231
ND + FN+ FL+HQ+R IM++LFLVG G E+P ++ +L++
Sbjct: 319 PVVDPSGNNDEAMFV--FNLVGSAFLYHQVRHIMAILFLVGTGLEEPSLVTKLMNAFDGA 376
Query: 232 -----------IEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVS 269
+E RKP Y M PL L+ + +++ W +E S
Sbjct: 377 ENRDLAICETRLEVLDRKPEYQMADALPLMLWDCAYAEEDVKWRTGTLEPS 427
>gi|351712567|gb|EHB15486.1| Bone morphogenetic protein receptor type-2 [Heterocephalus glaber]
Length = 1257
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 117/184 (63%), Gaps = 17/184 (9%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I GF Q ++DNTI L + L KT LIE ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIA-------GFASQENTDNTIEEKLFETLTKTRLIESRQTSNYHWCGRTDKGVS 115
Query: 62 AFCQVVTLKIRSK---------LTSPGEESDD-NELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ L E SDD E+ Y +L+ LP DI+V+AW+PV
Sbjct: 116 AFGQVISLDLRSQFPKGKDSKDLNLKDEVSDDAKEIRYTHILSRVLPPDIRVLAWAPVES 175
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 176 SFSARFSCLERTYCYFFPCADLDIVRMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIQ 235
Query: 172 HAGV 175
A V
Sbjct: 236 SAQV 239
>gi|169854752|ref|XP_001834048.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
gi|116504845|gb|EAU87740.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 511
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 155/331 (46%), Gaps = 78/331 (23%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IALK Y G++Y G +Q + T+ L AL L++ E + CGRT
Sbjct: 58 RKIALKFSYAGWDYGGLAYQPDDTPLPTVEGVLFDALSTAHLVDSNAGLEGCGWERCGRT 117
Query: 57 DSGVSAFCQVVTLKIRSKLTS---------PG--------------------EESDD--- 84
D GVS Q+V++ +RS L PG E DD
Sbjct: 118 DRGVSGARQIVSVWVRSALRKEELAEADIRPGPVAFPPNSRRAAMDDDDDLPERVDDEPV 177
Query: 85 ------------------NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY 126
NE Y+ +LN LP I+V AWSPVP +SARF C FR+YKY
Sbjct: 178 IVNGQDLWKPDTVEPQSRNEHDYVSILNRLLPETIRVSAWSPVPSTFSARFSCNFRHYKY 237
Query: 127 WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFND 186
+F GLDI M +AA L+G HDFRNLCK++ + +F+R V A + + ND
Sbjct: 238 FFTPKGLDIVRMQEAAGRLIGEHDFRNLCKLDPAKQITSFKRKVMSAHIE------RLND 291
Query: 187 SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI-------------- 232
N+ FN+ FL+HQ+R IM++LFL+G G E P ++ L+++
Sbjct: 292 ---NLHVFNLTGSAFLYHQVRHIMAILFLIGMGMESPSLVSNLLNVTSDSEVPRADDLPY 348
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY 263
E RKP Y M G PL L+ + T+ +
Sbjct: 349 EIVDRKPEYQMADGLPLMLWDCGYPEGTFDW 379
>gi|426193721|gb|EKV43654.1| hypothetical protein AGABI2DRAFT_188010 [Agaricus bisporus var.
bisporus H97]
Length = 612
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/351 (32%), Positives = 161/351 (45%), Gaps = 86/351 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSFAC----CGR 55
R IALK Y G+ Y G QT T+ L +AL K LI D++ C CGR
Sbjct: 80 RKIALKFCYSGWEYGGLAYQTGPTQLPTVEAVLFEALAKARLI-DRDGGMEGCRWEKCGR 138
Query: 56 TDSGVSAFCQVVTLKIRSKLTS--------------------------------PGEESD 83
TD GVSA QV++L +RS + S PG +
Sbjct: 139 TDKGVSAAGQVISLWLRSAVGSVEEGQGKGKGKEVGLVNQVEEGSTNQHQDSGLPGLSEE 198
Query: 84 D---------------------------NELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
D +EL Y+ +LN LP I+++AW+PV E +SAR
Sbjct: 199 DFGTLDLSEPGSPIEATKILQDSSSKSRHELDYVGILNRLLPPTIRILAWAPVAENFSAR 258
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
F C +R+YKY+F LDI AM +AA +L+G HDFRNLCK++ + FRR + A +
Sbjct: 259 FSCKYRHYKYFFSSHLLDISAMREAATHLIGEHDFRNLCKVDAQKQITMFRRNILRADIE 318
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI---- 232
N + FN+ FL+HQ+R IM++LFLVG G E+P ++ +L+++
Sbjct: 319 PVIDPSGNNG--EGMFVFNLVGSAFLYHQVRHIMAILFLVGTGLEEPSLVTKLMNVFDGA 376
Query: 233 ------------EKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVS 269
E RKP Y M PL L+ + +++ W +E S
Sbjct: 377 ENRDLAICETRLEVLDRKPEYQMADALPLMLWDCAYAEEDVKWRTGTLEPS 427
>gi|242781979|ref|XP_002479909.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500]
gi|218720056|gb|EED19475.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500]
Length = 621
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 170/407 (41%), Gaps = 145/407 (35%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKSS--------- 49
R IALK Y G Y+GF+ + TI + KAL+KT LI SS
Sbjct: 88 RHIALKFAYLGQRYNGFEHANGNITPLPTIEEEIWKALRKTRLIFPTTSSSMELDFNKDD 147
Query: 50 -------------FACCGRTDSGVSAFCQVVTLKIRSKL--------------------- 75
++ CGRTD GVSAF QV+ +++RS
Sbjct: 148 RARPFDLSWDGCQYSKCGRTDRGVSAFGQVIGIRVRSARPKRIVETATATSTTATTATSG 207
Query: 76 ----------------------TSPGEESDD-----------NELPYLKMLNNNLPRDIK 102
++P E+++ +ELPY+++LN LPRDI+
Sbjct: 208 ETTVQQVDVEASIVDSTEENIGSAPSVEANETEVDDGWDDIRDELPYIQILNGVLPRDIR 267
Query: 103 VVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------------------------- 132
++AW P P + ARF C R Y+Y+F Q
Sbjct: 268 ILAWCPNPPPDFDARFSCRERQYRYFFTQPAFNPVPGELGFLRSAAHHRGIAKKELRDGW 327
Query: 133 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT---------------- 176
LDI+AM +A + +G HDFRN C+++ + NF R++ HA +
Sbjct: 328 LDIEAMREACKQYIGRHDFRNFCRVDTSKQIENFERIIYHASIDLVDPNQHPLGFVGSKE 387
Query: 177 -SAWQNVQFNDSHHNICE----------FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
+N+ D+ N+ E F + FLWHQ+R ++++LFLVGQG E P I
Sbjct: 388 FQPTRNLVDLDNEGNVNEERPSTPLVYTFTLHGSAFLWHQVRHMVAILFLVGQGVEDPSI 447
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLTWHY 263
+ +L+D+ K+PRKP Y M PL L+ F D L W Y
Sbjct: 448 VSELLDVSKHPRKPTYEMASDAPLVLWDCVFPDEASGSREDALNWVY 494
>gi|300175988|emb|CBK22205.2| unnamed protein product [Blastocystis hominis]
Length = 399
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 132/272 (48%), Gaps = 40/272 (14%)
Query: 22 TSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKL------ 75
+ DN++ + AL++ LI+D K + CGRTD+GVSAF QV++L +RS L
Sbjct: 16 VADDNSVESAIFSALKRVHLIDDISKCHYQRCGRTDAGVSAFNQVISLYLRSNLRSGVEF 75
Query: 76 --------------------TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSA 115
++P + E Y +LN LP I++ W PV +SA
Sbjct: 76 VDEFDPSIPYNAPNTSNQPQSAPSSSTPVTEFDYASVLNKVLPPTIRITGWCPVDRSFSA 135
Query: 116 RFDCLF----------RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R+ C R Y+Y+F + D++ M A + G HDFRN C+++ N V +
Sbjct: 136 RYSCCGEDWAANLSAGRVYRYYFLRRNYDVELMRSAVKLFEGEHDFRNFCRIDAVN-VCD 194
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
F R V V + H++ I + FLWHQIRC+MS+LFLV EK I
Sbjct: 195 FTRTVFRGDVVEIRKG---ETPQHDVLAVEIVGRAFLWHQIRCMMSILFLVASKKEKQTI 251
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I L+D+ K P KP Y + EPL LY F+
Sbjct: 252 ISDLLDVSKSPCKPQYHLADPEPLVLYDCVFN 283
>gi|302851624|ref|XP_002957335.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
gi|300257294|gb|EFJ41544.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
Length = 642
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 158/314 (50%), Gaps = 44/314 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+++Y G++Y GF Q +++NTI +K
Sbjct: 109 RFVALELMYVGWSYQGFARQDNTENTIEASSVK--------------------------R 142
Query: 62 AFCQVVTLKIRS--KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
+ VV L +RS ++ P E + E Y +++N LP D++V+ W+ VPE +++R+
Sbjct: 143 GWGGVVALNLRSVARVDEP-EAPLELEYDYPRLVNKALPPDVRVLGWTAVPENFNSRY-- 199
Query: 120 LFRNYKYWFPQA---GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
Y P++ LDIDAM AA VG HDFRN CK +V V +FRR + T
Sbjct: 200 ---VYHPDPPESCRYSLDIDAMRAAAARFVGEHDFRNFCKPDVAT-VRSFRRRIL--SFT 253
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+D H + +R FLWHQ+RC+ +VL +VG+G E+PE++ +L+D+E +P
Sbjct: 254 LDPVPTSSSDGAHRVFAITVRGTAFLWHQVRCMAAVLLMVGRGQERPEVVSELLDVEAHP 313
Query: 237 RKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRD----LHEDWSLLSIKATMLGEM 292
RKP Y M EPL LY F +L + V VL D LH ++ A +
Sbjct: 314 RKPQYSMAPEEPLLLYACGFSDLRFRRSGAAVGCVLGDVGALLHRHLIGAALTAACHDRL 373
Query: 293 IKDTVRESKCTMGD 306
DT R+++ ++ D
Sbjct: 374 TLDTRRQTEPSIED 387
>gi|167537271|ref|XP_001750305.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771295|gb|EDQ84964.1| predicted protein [Monosiga brevicollis MX1]
Length = 1025
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 143/308 (46%), Gaps = 65/308 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+ Y G +Y G Q +T+ HL ALQ+ CLI+D+ F+ CGRTD GVS
Sbjct: 33 RKVALRFAYLGEHYRGLAFQDHQADTVEEHLFNALQRACLIDDRTSCEFSRCGRTDKGVS 92
Query: 62 AFCQVVTLKIRSKL---------TSP--------GEESDDNELPYLKMLNNNLPRDIKVV 104
A QV +L +R+ L T P E E+ Y+ +LN LP DI+V
Sbjct: 93 ALSQVASLYVRTNLEECTSLKPRTEPLPPKKAEAQREKARQEIDYIHVLNRLLPHDIRVY 152
Query: 105 AWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
AW+PVP + AR + KA +L G
Sbjct: 153 AWAPVPADFDAR--------------------SCKKAHNFLRGN---------------- 176
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+TSA N ++N+C + FLWHQIRC++SVLFL+GQ E P
Sbjct: 177 ----------MTSA--TFARNTPYYNLCCITVHGSAFLWHQIRCMVSVLFLIGQQLESPS 224
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSI 284
I+ +L+D+ P KP Y M PL L+ E+ ++ W DE + R ++ WS ++
Sbjct: 225 IVSRLLDVVSLPGKPQYDMAPDLPLVLWDCEYTDVPWVADERHQEGLQRHFYQLWSRQAM 284
Query: 285 KATMLGEM 292
+ ++ EM
Sbjct: 285 RTSLAFEM 292
>gi|449544039|gb|EMD35013.1| hypothetical protein CERSUDRAFT_85755 [Ceriporiopsis subvermispora
B]
Length = 519
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 156/330 (47%), Gaps = 76/330 (23%)
Query: 2 RPIALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLIEDKEK---SSFACCGRT 56
R IAL+ Y G Y G + Q + T+ L +AL T LI+ KE + CGRT
Sbjct: 51 RKIALRFSYNGGEYGGLEAQKIPTPLPTVEGVLYEALVHTKLIDPKEGMDGCGWEKCGRT 110
Query: 57 DSGVSAFCQVVTLKIRSKL----------------------------TSPGEESDD---- 84
D GVSA QV++L +RS L + P + +D
Sbjct: 111 DKGVSAAGQVISLWVRSALGEVKAEADSAVEASTSSTSQDAKTTVGTSQPADAGEDATGL 170
Query: 85 ----------------NELP----------YLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
N LP Y+ +LNN LP I++ AW+PV ++SARF
Sbjct: 171 EGDFALMGDWDEPPTSNSLPPPTKPTTELNYVSLLNNVLPPTIRINAWAPVAPEFSARFS 230
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
C +R+YKY+F GLD+DAM AA LVG HDFRNLCK++ + +F R + A + A
Sbjct: 231 CRYRHYKYFFSPHGLDLDAMRDAASRLVGEHDFRNLCKVDPQKQLTSFARRILSAEINPA 290
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK---- 234
H ++ ++R Q FL++Q+R IM+VLFLVG E+P ++ L++ +
Sbjct: 291 IP------PHEDMYVLDLRGQAFLYNQVRHIMAVLFLVGTRLEQPSVMDALMNTDPANPK 344
Query: 235 ---YPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+P +P P+V +P F + W
Sbjct: 345 PPSHPGEPAPPIVESKPEYQMAQPFPLVLW 374
>gi|443900339|dbj|GAC77665.1| pseudouridylate synthase [Pseudozyma antarctica T-34]
Length = 654
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 145/299 (48%), Gaps = 69/299 (23%)
Query: 2 RPIALKILYQGFNYHGFQIQT-------SSDNTIAHHLLKALQKTCLIEDK---EKSSFA 51
R IAL+ Y G Y G Q SS T+ L A+ L++ + + F+
Sbjct: 117 RKIALRFSYDGAGYSGLAAQNTSVPGSGSSLPTVEAVLWDAMCTARLVDPALGMDGAGFS 176
Query: 52 CCGRTDSGVSAFCQVVTLKIRSKLTS-----------------PGEES------------ 82
CGRTD GVSA QVV L +RSK + P E
Sbjct: 177 RCGRTDRGVSAAGQVVALWVRSKKLNHWTARLEHQAKFSSDPVPLSEDHEALEAKRNARL 236
Query: 83 DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG---------- 132
+D ELPY+++LN LP I++ AWSPV +S+RFDC++R+YKY+FP
Sbjct: 237 EDTELPYVQILNRILPPTIRIHAWSPVRADFSSRFDCVYRHYKYFFPAGPPSLLLAQSSC 296
Query: 133 ------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG---VTS 177
LDI M AA LVG HDFRNLCK++ + N+RR + V+S
Sbjct: 297 SSSAIAEAASTRLDIGRMRDAAARLVGEHDFRNLCKIDASKQITNYRRRIDGVSIDRVSS 356
Query: 178 AW--QNVQFNDSHHNICE---FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
W Q ND+ E N+R FL+HQ+R IM++LFLVG E+P ++++L++
Sbjct: 357 HWPTQPSNINDTPEGDEEMYVLNLRGTAFLYHQVRNIMAILFLVGARLEEPSVVEELMN 415
>gi|358057869|dbj|GAA96114.1| hypothetical protein E5Q_02775 [Mixia osmundae IAM 14324]
Length = 834
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 179/383 (46%), Gaps = 79/383 (20%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDK------EKSSFACC 53
R +AL+ Y G++Y G Q++ T+ +L A++K LI + E F+ C
Sbjct: 106 RKVALRFCYDGWDYCGLASQSTPTPLPTVEDTILAAMRKARLIPAQGDAPSLESLGFSRC 165
Query: 54 GRTDSGVSAFCQVVTLKIRSKLT------------------------------------- 76
GRTD GVSA QV+ L +RS+L+
Sbjct: 166 GRTDRGVSAANQVIALYLRSQLSLEQLREECGDDARMSYNEALNRDAARQRATVPGSGAI 225
Query: 77 -----SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQA 131
P + +EL Y+ +LN LP I+++ WS V ++ RF CL+R YKY+F +
Sbjct: 226 TRVDCGPAPQRMYDELDYVGILNRILPASIRILGWSAVDAEFDGRFACLWRQYKYFFSLS 285
Query: 132 --GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFN-DSH 188
GL++D M +AA L G HDFR++CK++ + N+RRLV A + + +
Sbjct: 286 PLGLELDPMREAASRLEGEHDFRHMCKIDASKQITNYRRLVLSATIDPVETGLGRDAKGQ 345
Query: 189 HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI--EKYPR--------K 238
++ N++ FL++Q+R +M++LFLVG E P++I L ++ E P+ K
Sbjct: 346 QDLYVLNLKGTAFLYNQVRHMMALLFLVGSKRESPDVIDALFNVATEADPKLATGALLGK 405
Query: 239 PVYPMVRGEPLNLYHTEFDN--LTWHYD---------EIEVSHVLRDLHEDWSLLSIKAT 287
P Y M PL L+ + + L W D + +S LH + IKAT
Sbjct: 406 PAYEMADDLPLVLWDCGYPDGMLHWESDGSVASSNESRLALSSTPAVLHAALTRNRIKAT 465
Query: 288 MLGEMI----KDT-VRESKCTMG 305
+ + KDT V +++ +MG
Sbjct: 466 LQQHFLLASDKDTPVLDARASMG 488
>gi|343425503|emb|CBQ69038.1| related to DEG1-pseudouridine synthase [Sporisorium reilianum SRZ2]
Length = 652
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 147/315 (46%), Gaps = 84/315 (26%)
Query: 2 RPIALKILYQGFNYHGFQIQT--------SSDNTIAHHLLKALQKTCLIEDK---EKSSF 50
R IAL+ Y G Y G Q S+ T+ L AL L++ + + F
Sbjct: 82 RKIALRFSYDGAGYSGLAAQNAVAGGGAGSTLPTVEGVLWDALCTARLVDPALGMDGAGF 141
Query: 51 ACCGRTDSGVSAFCQVVTLKIRSK-------------------LTSPGEES--------- 82
+ CGRTD GVSA QVV L +RSK P EE
Sbjct: 142 SRCGRTDRGVSAAGQVVALWVRSKKLNQWSERLEQQEQFSPSLAAKPSEEEWQALQAKRE 201
Query: 83 ---DDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ--------- 130
+D ELPY+ +LN LP I++ AWSPV +S+RFDC +R+YKY+FP
Sbjct: 202 AKLEDTELPYVSILNRILPPSIRIQAWSPVRSNFSSRFDCTYRHYKYFFPSGPPSIFYPP 261
Query: 131 -----------------AG---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
AG LDI M AA+ L+G HDFRNLCK++ + N+RR +
Sbjct: 262 ASSTSTASASAGMPSQDAGATRLDIGRMRDAARRLLGEHDFRNLCKVDASKQITNYRRRI 321
Query: 171 THAG---VTSAWQN---------VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
V++ W + V D+ H + N+R FL+HQ+R IM++LFLVG
Sbjct: 322 DGVSIDRVSTHWPSTHCRITDDAVDGKDTEH-MYVLNLRGTAFLYHQVRNIMAILFLVGA 380
Query: 219 GNEKPEIIQQLVDIE 233
E P ++++L++ E
Sbjct: 381 RLEHPSVVEELMNTE 395
>gi|225560228|gb|EEH08510.1| pseudouridylate synthase [Ajellomyces capsulatus G186AR]
Length = 625
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 121/404 (29%), Positives = 168/404 (41%), Gaps = 148/404 (36%)
Query: 1 MRPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLI--------------- 42
R IALK Y G Y+G++ T+ TI L KAL+K LI
Sbjct: 89 TRFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGGEGVVG 148
Query: 43 ----EDKEKSSF-----AC----CGRTDSGVSAFCQVVTLKIRS--------KLTSPG-- 79
+ +E+ S+ C CGRTD GVSAF QVV +++RS K T G
Sbjct: 149 DGESQGREERSYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPHKKAAKSTGNGNG 208
Query: 80 -------------------------------------EESDD------NELPYLKMLNNN 96
E++D +ELPY+ +LN
Sbjct: 209 AGNIVSSAEPSTTTSTDAYNSGVENLLGGLSLSGSENSETEDSWDDIADELPYITILNRV 268
Query: 97 LPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------------------- 132
LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 269 LPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLWEG 328
Query: 133 -------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT--- 176
LDI+AM + A+YL+G+HDFRN CK++ + N R + HA +
Sbjct: 329 SGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLD 388
Query: 177 ----------------------SAWQNVQFNDSHHNICEFNIRSQG--FLWHQIRCIMSV 212
A N +D N+ ++I G FLWHQ+R + ++
Sbjct: 389 PKTKPLSYLRQHEFTTFDTENDKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHLAAI 448
Query: 213 LFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
LFLVGQG E P II +L+D+EK+PR+P Y + PL L+ F
Sbjct: 449 LFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 492
>gi|325090241|gb|EGC43551.1| pseudouridylate synthase [Ajellomyces capsulatus H88]
Length = 626
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 167/405 (41%), Gaps = 149/405 (36%)
Query: 1 MRPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLI--------------- 42
R IALK Y G Y+G++ T+ TI L KAL+K LI
Sbjct: 89 TRFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGGEGVVG 148
Query: 43 ----EDKEKSSF-----AC----CGRTDSGVSAFCQVVTLKIRS---------------- 73
+ +E+ S+ C CGRTD GVSAF QVV +++RS
Sbjct: 149 DGESQGREERSYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPHKKAAKRSTGNGN 208
Query: 74 ---KLTSPGEES---------------------------------DD--NELPYLKMLNN 95
+ S E S DD +ELPY+ +LN
Sbjct: 209 GAGNIVSSAEPSTTTSTDAYNSGVENLLGGLSLSGSENSETEDSWDDIADELPYITILNR 268
Query: 96 NLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG---------------------- 132
LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 269 VLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLGE 328
Query: 133 --------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT-- 176
LDI+AM + A+YL+G+HDFRN CK++ + N R + HA +
Sbjct: 329 GSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELL 388
Query: 177 -----------------------SAWQNVQFNDSHHNICEFNIRSQG--FLWHQIRCIMS 211
A N +D N+ ++I G FLWHQ+R + +
Sbjct: 389 DPKTKPLSYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHLAA 448
Query: 212 VLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+LFLVGQG E P II +L+D+EK+PR+P Y + PL L+ F
Sbjct: 449 ILFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 493
>gi|240278982|gb|EER42488.1| pseudouridylate synthase [Ajellomyces capsulatus H143]
Length = 626
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 167/405 (41%), Gaps = 149/405 (36%)
Query: 1 MRPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLI--------------- 42
R IALK Y G Y+G++ T+ TI L KAL+K LI
Sbjct: 89 TRFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGGEGVVG 148
Query: 43 ----EDKEKSSF-----AC----CGRTDSGVSAFCQVVTLKIRS---------------- 73
+ +E+ S+ C CGRTD GVSAF QVV +++RS
Sbjct: 149 DGESQGREERSYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPHKKAAKRSTGNGN 208
Query: 74 ---KLTSPGEES---------------------------------DD--NELPYLKMLNN 95
+ S E S DD +ELPY+ +LN
Sbjct: 209 GAGNIVSSAEPSTTTSTDAYNSGVENLLGGLSLSGSENSETEDSWDDIADELPYITILNR 268
Query: 96 NLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG---------------------- 132
LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 269 VLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLGE 328
Query: 133 --------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT-- 176
LDI+AM + A+YL+G+HDFRN CK++ + N R + HA +
Sbjct: 329 GSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELL 388
Query: 177 -----------------------SAWQNVQFNDSHHNICEFNIRSQG--FLWHQIRCIMS 211
A N +D N+ ++I G FLWHQ+R + +
Sbjct: 389 DPKTKPLSYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHLAA 448
Query: 212 VLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+LFLVGQG E P II +L+D+EK+PR+P Y + PL L+ F
Sbjct: 449 ILFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 493
>gi|108743218|dbj|BAE95388.1| pseudouridine synthase [Saccharomyces bayanus]
Length = 202
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 112/179 (62%), Gaps = 12/179 (6%)
Query: 86 ELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQ 143
E+PY+++LN LP DI++ V P P + ARF C R+YKY F LDI M KAA
Sbjct: 1 EIPYVQILNQLLPDDIRISAVCLRP-PPGFDARFSCTNRHYKYVFNGKHLDITKMSKAAS 59
Query: 144 YLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLW 203
Y +G +DFRN CK++ + NF+R + A + + +D+ + C F++ FLW
Sbjct: 60 YFLGENDFRNFCKLDGSKQLTNFKRSIVSAKI------LPVSDTFY--C-FDLVGSAFLW 110
Query: 204 HQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
HQ+RC+M++LFLVGQ +E+PEI+ +L+DIEK P+KPVY M PL LY EF + W
Sbjct: 111 HQVRCMMAILFLVGQTHEEPEIVLRLLDIEKTPQKPVYDMADEIPLLLYDCEFPQMEWQ 169
>gi|359495192|ref|XP_002264487.2| PREDICTED: uncharacterized protein LOC100244254 [Vitis vinifera]
Length = 1576
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 84 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQ 143
+ E+ Y+++LN LP+DI+V+ W PVP + ARF CL R YKY+F + L+I AM A +
Sbjct: 1322 EGEIDYMRVLNRVLPKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRGNLNILAMESAGK 1381
Query: 144 YLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLW 203
VG HDFRN CKM+ N V N+RR + + N +++ + + I+ FLW
Sbjct: 1382 KFVGEHDFRNFCKMDAVN-VHNYRRHIISFEIAPT--NNRYDGNQ--LWAIKIKGSAFLW 1436
Query: 204 HQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
HQ+RC+++VLF++GQG E P+++ L+D E+ RKP Y M PL L EF+ L
Sbjct: 1437 HQVRCMVAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEFEGL 1492
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCL-IEDKEKSSFACCGRTDSGV 60
R +ALK++Y G ++GF + D T+ + KAL+KT L + DK++ ++ CGRTD GV
Sbjct: 135 RYVALKVMYFGPRFYGFASEAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKGV 194
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNE 86
S+ QV+ L +RS L G ++++
Sbjct: 195 SSVGQVIALFLRSNLKEIGAREENSK 220
>gi|403417441|emb|CCM04141.1| predicted protein [Fibroporia radiculosa]
Length = 543
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 153/341 (44%), Gaps = 85/341 (24%)
Query: 2 RPIALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IALK Y G Y G + Q +S T+ L AL T LI+ E + CGRT
Sbjct: 70 RKIALKFSYNGSQYSGLEYQKTPTSTPTVEGVLYDALVHTRLIDPALGFEGCGWEKCGRT 129
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEES--------------------------DDN----- 85
D GVS QVV+L IRS L G S DD
Sbjct: 130 DKGVSGAGQVVSLWIRSALRETGSTSHRSEVERPETTSLSNEVQQHPPRSSEDDTGLEGD 189
Query: 86 ------------------------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
EL Y+ LN+ LP I+++AWSPV +SARF C +
Sbjct: 190 FALMDDWDEPPTNAALPPPPKQIEELRYVSQLNHVLPPTIRIIAWSPVAPDFSARFSCRY 249
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R+YKY+F GLD+ AM AA LVG HDFRNLCK++ + +F R + A + +
Sbjct: 250 RHYKYFFSPRGLDLAAMQDAASRLVGEHDFRNLCKLDPSKQLTSFVRKILSAQINPVQPD 309
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE-KYPR--- 237
+ I F++R FL++Q+R IM++LFLVG E+ II L++++ + PR
Sbjct: 310 GE-------IYVFDLRGTAFLYNQVRHIMAILFLVGTRLEQSCIIDSLLNVDPENPRPPA 362
Query: 238 ------------KPVYPMVRGEPLNLYHTEFDNLT--WHYD 264
KP Y M PL L+ +D T W D
Sbjct: 363 KEGESVPAVVVSKPEYQMADPLPLMLWECGYDPATVSWRAD 403
>gi|198426359|ref|XP_002130657.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine
isomerase 3) (tRNA pseudouridylate synthase 3) [Ciona
intestinalis]
Length = 557
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 183/374 (48%), Gaps = 70/374 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLI-------------EDKEKS 48
R IALK+ Y G++Y G Q + D+TI L +AL++ L+ DKE S
Sbjct: 101 RRIALKVAYLGWDYEGLQENENLDDTIERILREALRRVRLVPADRSIYFSRCGRTDKEVS 160
Query: 49 SFA--CCGRTDSGVSAFCQVVTLKIR---------------------------------- 72
+F+ + S +++ V+T +
Sbjct: 161 AFSQVIVVKVRSLLASGPGVITANVAYPAEEENQEEGEEEDSHDPKHSNQNFLPEVSVPE 220
Query: 73 ----SKLTSPGEES-------------DDNELPYLKMLNNNLPRDIKVVAWSPVP-EKYS 114
++T E+S ++NE + MLN LP +IKV+AW+PV E++S
Sbjct: 221 NNGDVEMTDGAEQSKTPEINDENPIKIEENEYEFTGMLNRVLPAEIKVLAWAPVENEEFS 280
Query: 115 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
AR CL R Y+Y+F + DI AM++AA+ G HDFRN K+NV N V RR + H
Sbjct: 281 ARKHCLGREYRYYFHRGNADITAMNEAAKLFCGLHDFRNFGKVNVVNCVNYVRR-INHFE 339
Query: 175 VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
++ + + + + +C I GF++HQ+R +M+VL+L+G G EKPEII +L +IEK
Sbjct: 340 IS--FCDEEKGAGPYRMCFARIIGSGFIYHQVRSMMAVLYLIGVGLEKPEIITELFNIEK 397
Query: 235 YPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
+P+KP + +V+ L L+++ + +L W + VL W L++K+ + +++K
Sbjct: 398 HPKKPWFGLVKPHALVLFNSIYPDLKWRIVNQDAQRVLEHFQNFWGNLALKSHLTFKLLK 457
Query: 295 DTVRESKCTMGDLD 308
+ +G D
Sbjct: 458 LVENDETIAVGGED 471
>gi|219117902|ref|XP_002179737.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408790|gb|EEC48723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 216
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 126/227 (55%), Gaps = 16/227 (7%)
Query: 27 TIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNE 86
++ L +AL+ + L+E + S ++ CGRTD GVSA Q +R ++ E
Sbjct: 1 SVEKALFRALRTSRLVESRASSGYSRCGRTDKGVSAAGQQTDPPLR-------QQRALRE 53
Query: 87 LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL-FRNYKYWFPQAGLDIDAMHKAAQYL 145
Y K+LNN LP DI+V+ W PV + +SARF ++ + LD++AM + +
Sbjct: 54 HAYDKILNNLLPDDIRVLGWIPVSDDFSARFSATSRTYRYFFRRRRTLDVEAMRQGLHRM 113
Query: 146 VGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQ 205
GTHDFRN CKM+V V NF R + A + + ++ + F I Q FLWHQ
Sbjct: 114 QGTHDFRNFCKMDV-EKVYNFERRIDKAEIVNMERDT-------GVSYFLIVGQAFLWHQ 165
Query: 206 IRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
IR + S+LF +GQG E PE++ ++DI + P KP YP+ +PL L+
Sbjct: 166 IRYMASILFAIGQGLETPELVTAMLDIAQNPGKPAYPLADEQPLVLH 212
>gi|225681814|gb|EEH20098.1| pseudouridylate synthase [Paracoccidioides brasiliensis Pb03]
Length = 641
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 165/423 (39%), Gaps = 161/423 (38%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI---------------- 42
R IALK Y G Y G++ + TI L KAL+K LI
Sbjct: 93 RFIALKFAYLGQRYGGYEHSNGNITPLPTIEEELWKALRKARLIFPQSVEGDGQAQVERG 152
Query: 43 ------------EDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLT------------SP 78
D ++ CGRTD GVSAF QVV +++RS P
Sbjct: 153 EGEQGEGERLHTIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKQVVTDGRGKEGP 212
Query: 79 G------------------------------------EESDD--------NELPYLKMLN 94
G EESD+ +ELPY+ +LN
Sbjct: 213 GAVGIAAVATPEISSTTPDAYRSGAETPLVGASGCASEESDNEDEWDDIADELPYITILN 272
Query: 95 NNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG--------------------- 132
LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 273 RVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGSDQKSSG 332
Query: 133 -------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV---- 175
LDI+AM + A+YL+GTHDFRN CK++ + N R + HA +
Sbjct: 333 SDSSPSTELREGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQITNHVRHIYHADIELLD 392
Query: 176 ----------TSAWQNVQ----------------FNDSHHNICEFNIRSQGFLWHQIRCI 209
+Q ++ + S+ I I FLWHQ+R +
Sbjct: 393 PQTKPLSYLGQPEFQALEAGNGELDRNLVTKDSLLSSSNMKIYSITIHGSAFLWHQVRHL 452
Query: 210 MSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLT 260
++LFL+GQG E+P II +L+DIEK PR+P Y + PL L+ F D L
Sbjct: 453 AAILFLIGQGLERPSIIPELLDIEKNPRRPTYEIASDAPLVLWDCIFPHGRSGSREDGLD 512
Query: 261 WHY 263
W Y
Sbjct: 513 WVY 515
>gi|392563519|gb|EIW56698.1| tRNA pseudouridine synthase [Trametes versicolor FP-101664 SS1]
Length = 503
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 164/370 (44%), Gaps = 83/370 (22%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFAC----CGRT 56
R IALK Y G +Y G + Q T+ L A+ T L+ D+E C CGRT
Sbjct: 45 RKIALKFTYNGIHYGGMEFQRDPALPTVEGVLFDAMVHTKLV-DREGGLDGCGWQRCGRT 103
Query: 57 DSGVSAFCQVVTLKIR-----------SKLTS-----------------PG--------- 79
D GVSA QVV+L +R S L S PG
Sbjct: 104 DKGVSAGGQVVSLWVRSSSNGKTIASGSSLQSVEQPTLHTDPEDLPEDGPGLEGDFGLMG 163
Query: 80 -----------------EESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
E+++D+ Y+ LN+ LP I+++AWSPV + +SAR C +R
Sbjct: 164 DFDEPPTNGSMTTKPAPEDAEDDNTAYVYKLNHILPPTIRILAWSPVADDFSARHSCRWR 223
Query: 123 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNV 182
+YKY+F GLD+ AM AA L+G HDFRNLCK++ + F R + HA V
Sbjct: 224 HYKYFFSPHGLDLAAMSDAASRLLGEHDFRNLCKVDASKQLTVFTRRILHASVDPVDPA- 282
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY------- 235
+ + FN+R FL++ +R +M++L LVG G E P ++ L++ +
Sbjct: 283 ----NPEGMHVFNLRGNAFLYNMVRHLMAILLLVGTGLEHPSVMTALLNADPSRPLPPFR 338
Query: 236 PRKPVYPMVRGEPLNLYHTEFDNLTWH--YDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
+P P+V G+P + + W YD+ + DW + K +GE
Sbjct: 339 EGEPAPPLVTGKPEYIIADPLPLMLWACGYDDDAL---------DWRIDRAKPDAVGETA 389
Query: 294 KDTVRESKCT 303
K +R C
Sbjct: 390 KSPLRGMMCA 399
>gi|168049023|ref|XP_001776964.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671665|gb|EDQ58213.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 117/199 (58%), Gaps = 20/199 (10%)
Query: 84 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDA------ 137
++E Y+ +LN LP DI+V+ W PVP ++ARF C++R YKY+F GL+ID
Sbjct: 374 EDEYDYVGILNRALPEDIRVLGWCPVPPGFNARFSCMYREYKYFFIDDGLNIDVWTLIYA 433
Query: 138 -------MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHN 190
M A + G HDF N CKM+ N V N+ R +TH + + N ++ +
Sbjct: 434 FNRQYNVMKFACKQFEGEHDFTNFCKMDAAN-VHNYMRTITHFDIIPS--NEKWGGK--S 488
Query: 191 ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLN 250
+ N++ FLWHQ+RC+ +VLF+VG G+EKP I+++L+D++K RKP Y M PL
Sbjct: 489 VWIMNVKGTAFLWHQVRCMAAVLFMVGAGHEKPTIVEELLDVKKIVRKPQYIMASETPLL 548
Query: 251 LYHTEFDNLTW--HYDEIE 267
L+H + L++ H D ++
Sbjct: 549 LFHCGYQGLSFRCHPDAVK 567
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTI---------AHHLLKALQKTCLIED-KEKSSFA 51
R +ALK++Y G Y GF Q S NT+ L AL +T +I ++ +
Sbjct: 215 RHVALKVMYLGTGYQGFASQAGSPNTVEVQNSLIGGQTELFAALHRTRMITGTAAEAKYT 274
Query: 52 CCGRTDSGVSAFCQVVTLKIRSKL 75
CGRTD GVSA QVV L +RSK+
Sbjct: 275 RCGRTDKGVSAVGQVVALYLRSKI 298
>gi|71021049|ref|XP_760755.1| hypothetical protein UM04608.1 [Ustilago maydis 521]
gi|46100185|gb|EAK85418.1| hypothetical protein UM04608.1 [Ustilago maydis 521]
Length = 913
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 149/318 (46%), Gaps = 86/318 (27%)
Query: 2 RPIALKILYQGFNYHGFQIQT-------SSDNTIAHHLLKALQKTCLIEDK---EKSSFA 51
R IAL+ Y G Y G Q SS T+ L AL L++ + + F+
Sbjct: 129 RKIALRFSYDGAGYSGLAAQNTTVPGSGSSLPTVEGVLWDALCTARLVDPALGMDGAGFS 188
Query: 52 CCGRTDSGVSAFCQVVTLKIRSK----------------------LTSPG-EESDD---- 84
CGRTD GVSA QVV L +RSK L+ P +E DD
Sbjct: 189 RCGRTDRGVSAAGQVVALWVRSKKLNQWPDRLEHQEQFSPLASSLLSKPSPQEWDDLQEK 248
Query: 85 -------NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ------- 130
ELPY+++LN LP I++ AWSPV +S+RFDC++R+YKY+FP
Sbjct: 249 RNAKLEGTELPYVQILNRILPSSIRIQAWSPVRSNFSSRFDCVYRHYKYFFPAGPPRLFY 308
Query: 131 ---------------------AG---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
AG LDI M AA+ L+G HDFRNLCK++ + N+
Sbjct: 309 PRSKTINGEDGVAFSVGGGQDAGATRLDIALMRDAARRLLGEHDFRNLCKIDASKQITNY 368
Query: 167 RRLVTHAG---VTSAWQN--------VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFL 215
RR + V+S W + + ++ N+R FL+HQ+R IM++LFL
Sbjct: 369 RRRIDGVSIDRVSSHWPSKNDGVEDDDGGEEGEEHMYVLNLRGTAFLYHQVRNIMAILFL 428
Query: 216 VGQGNEKPEIIQQLVDIE 233
VG E P +I++L++ E
Sbjct: 429 VGARLEPPSVIEELMNTE 446
>gi|328861209|gb|EGG10313.1| hypothetical protein MELLADRAFT_76951 [Melampsora larici-populina
98AG31]
Length = 568
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 160/345 (46%), Gaps = 97/345 (28%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIE---------------- 43
R IAL+I+YQG+N+ G +Q + + T+ L KAL L+E
Sbjct: 87 RKIALQIVYQGWNHGGLAWQPEITPLTTVEGELFKALLSARLVEMSEEFQEEDREEILKT 146
Query: 44 -------DKEKSSFACCGRTDSGVSAFCQVVTLKIRSKL--------------TSPG--- 79
D E ++ GRTD+GVS QVV+L +RS L + PG
Sbjct: 147 EEWREAVDLEGWEYSRAGRTDAGVSGSGQVVSLWVRSNLLDSKLRQELLDSKQSPPGSFR 206
Query: 80 -----EESDD--------------------NELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
E S D ELPY+ +LN+ LP IKV+AWSPV ++
Sbjct: 207 DPEGFERSTDEENEEVHPKILNSSISNKPQEELPYISILNSLLPESIKVIAWSPVSTEFD 266
Query: 115 ARFDCLFRNYKYWFPQ------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
ARF C R+YKY+F + LDI+ M + A+ L+G HDFRNLCK++ + NF+R
Sbjct: 267 ARFSCKGRHYKYFFTKFESDLNQSLDIEMMREGAKKLIGEHDFRNLCKLDKSKQIENFKR 326
Query: 169 LVTHAGVTSAWQNV---QFNDS--------------HHNICEFNIRSQGFLWHQIRCIMS 211
+ A + +N +FN + + + F++R FL++Q+R IM+
Sbjct: 327 EIYSAEINLVDENAIGPEFNKNDGLEGSVGQDGLGEKNQMYVFDLRGSAFLYNQVRNIMA 386
Query: 212 VLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+LFL+G E P +I L+ + +KP E L L EF
Sbjct: 387 ILFLIGSRLESPNLIDGLLYTDSSAQKP-------EGLGLITDEF 424
>gi|402224351|gb|EJU04414.1| pseudouridine synthase [Dacryopinax sp. DJM-731 SS1]
Length = 506
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 142/307 (46%), Gaps = 66/307 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQT--SSDNTIAHHLLKALQKTCLI---EDKEKSSFACCGRT 56
R IALK Y G+ Y G + Q + T+ L AL T LI E E + + GRT
Sbjct: 56 RKIALKFCYHGWEYCGLEKQKGYTPIPTVESVLESALIATRLIDPVEGFEGAGYGKSGRT 115
Query: 57 DSGVSAFCQVVTLKIRSKLTSPG-----------------EESDDN-------------- 85
D GVSA QVV+L +RS + EE DD+
Sbjct: 116 DRGVSAAGQVVSLWVRSMVAGGANDGERKEAEEVNLALDDEEVDDSFEPLTESMELVSQL 175
Query: 86 ----------------------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
E+PY ++LN LP I+V+AWSPV + ARF C+ R+
Sbjct: 176 LAEQDTPEVLVDDTQHLLPTEGEIPYARVLNRVLPPSIRVLAWSPVHSDFEARFSCIGRH 235
Query: 124 YKYWFP-QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNV 182
YKY+F GLD+ M AA + GTHD+RN C+++ G V + R + +
Sbjct: 236 YKYFFRLHPGLDLSRMRDAAARMKGTHDWRNFCRLDGSKGDVRYVRTIEDVTLEPV---- 291
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
D + N++ GFLWHQIR I +VLFLVGQG E P ++ +++ ++ P+ P
Sbjct: 292 -AKDEDPTLYVLNVQGHGFLWHQIRHIAAVLFLVGQGLEHPSVVTSMLNTDQ--SNPLPP 348
Query: 243 MVRGEPL 249
EPL
Sbjct: 349 FREDEPL 355
>gi|295671354|ref|XP_002796224.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284357|gb|EEH39923.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 700
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 163/423 (38%), Gaps = 161/423 (38%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI---------------- 42
R IALK Y G Y G++ + TI L KAL+K LI
Sbjct: 149 RFIALKFAYLGQRYGGYEHSNGNITPLPTIEEELWKALRKARLIFPQSVEGDGQVQVERG 208
Query: 43 ------------EDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKL--------------- 75
D ++ CGRTD GVSAF QVV +++RS
Sbjct: 209 EGEQGEGERLHTIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRVVTDGRGKEGQ 268
Query: 76 ---------------TSP------------------GEESDD--------NELPYLKMLN 94
T+P EESD+ +ELPY+ +LN
Sbjct: 269 GAVSIAAVATPEISSTTPDAYSSGAETPLVEAPSCASEESDNEGGWDDIADELPYITILN 328
Query: 95 NNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG--------------------- 132
LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 329 RVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGSDQKSSV 388
Query: 133 -------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA------ 173
LDI+AM + A+YL+GTHDFRN CK++ + N R + HA
Sbjct: 389 SGSSPITELREGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQITNHVRHIYHADIELLD 448
Query: 174 ------------------------GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCI 209
G ++ + S+ I I FLWHQ+R +
Sbjct: 449 PQTKPLSYLGQPEFQALEARNGELGRNLVSKDSLLSSSNMKIYSITIHGSAFLWHQVRHL 508
Query: 210 MSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLT 260
++LFL+GQG E+P II +L+D EK PR+P Y + PL L+ F D L
Sbjct: 509 AAILFLIGQGLERPSIIPELLDFEKNPRRPTYEIASDAPLVLWDCIFPHGRSGSREDGLD 568
Query: 261 WHY 263
W Y
Sbjct: 569 WVY 571
>gi|239607141|gb|EEQ84128.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ER-3]
Length = 664
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 167/426 (39%), Gaps = 163/426 (38%)
Query: 1 MRPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLI--------------- 42
MR IALK Y G Y+G++ T+ TI L KAL+K LI
Sbjct: 110 MRFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSEDD 169
Query: 43 -------EDKEKS----------SFACCGRTDSGVSAFCQVVTLKIRSK----------- 74
+D+ ++ CGRTD GVSAF QVV +++RS
Sbjct: 170 MGGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRVEVKSD 229
Query: 75 ----------------------------------LTSPGEESDD---------NELPYLK 91
L+ G E+ D +ELPY+
Sbjct: 230 GTGTDVGAVVTNAEVSAGASTNVYDSGVESPLGGLSFSGSENSDTEDDWDDIADELPYIT 289
Query: 92 MLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG------------------ 132
+LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 290 ILNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQ 349
Query: 133 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
LDI+AM + A+YL+G+HDFRN CK++ + N R + HA
Sbjct: 350 GSERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHAD 409
Query: 175 V---------------------TSAWQNVQFNDSHHNICEFNIR-------SQGFLWHQI 206
+ S N+S + NI+ FLWHQ+
Sbjct: 410 IELLDPKTKPLSYLGQPGFRPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQV 469
Query: 207 RCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------D 257
R + ++LFLVGQG E P II +L+D+E+ PR+P Y + PL L+ F D
Sbjct: 470 RHLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVFPDESSGSRED 529
Query: 258 NLTWHY 263
+ W Y
Sbjct: 530 AMNWVY 535
>gi|261201021|ref|XP_002626911.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081]
gi|239593983|gb|EEQ76564.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081]
Length = 718
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 167/426 (39%), Gaps = 163/426 (38%)
Query: 1 MRPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLI--------------- 42
MR IALK Y G Y+G++ T+ TI L KAL+K LI
Sbjct: 164 MRFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSEDD 223
Query: 43 -------EDKEKS----------SFACCGRTDSGVSAFCQVVTLKIRSK----------- 74
+D+ ++ CGRTD GVSAF QVV +++RS
Sbjct: 224 MGGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRVEVKSD 283
Query: 75 ----------------------------------LTSPGEESDD---------NELPYLK 91
L+ G E+ D +ELPY+
Sbjct: 284 GTGTDVGAVVTTAEVSAGASTNVYDSGVESPLGGLSFSGSENSDTEDDWDDIADELPYIT 343
Query: 92 MLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG------------------ 132
+LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 344 ILNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQ 403
Query: 133 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
LDI+AM + A+YL+G+HDFRN CK++ + N R + HA
Sbjct: 404 GSERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHAD 463
Query: 175 V---------------------TSAWQNVQFNDSHHNICEFNIR-------SQGFLWHQI 206
+ S N+S + NI+ FLWHQ+
Sbjct: 464 IELLDPKTKPLSYLGQPGFRPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQV 523
Query: 207 RCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------D 257
R + ++LFLVGQG E P II +L+D+E+ PR+P Y + PL L+ F D
Sbjct: 524 RHLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVFPDESSGSRED 583
Query: 258 NLTWHY 263
+ W Y
Sbjct: 584 AMNWVY 589
>gi|327351094|gb|EGE79951.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 718
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 167/426 (39%), Gaps = 163/426 (38%)
Query: 1 MRPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLI--------------- 42
MR IALK Y G Y+G++ T+ TI L KAL+K LI
Sbjct: 164 MRFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSEDD 223
Query: 43 -------EDKEKS----------SFACCGRTDSGVSAFCQVVTLKIRSK----------- 74
+D+ ++ CGRTD GVSAF QVV +++RS
Sbjct: 224 MGGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRVEVKSD 283
Query: 75 ----------------------------------LTSPGEESDD---------NELPYLK 91
L+ G E+ D +ELPY+
Sbjct: 284 GTGTDVGAVVTTAEVSAGASTNVYDSGVESPLGGLSFSGSENSDTEDDWDDIADELPYIT 343
Query: 92 MLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG------------------ 132
+LN LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 344 ILNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQ 403
Query: 133 ------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
LDI+AM + A+YL+G+HDFRN CK++ + N R + HA
Sbjct: 404 GSERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHAD 463
Query: 175 V---------------------TSAWQNVQFNDSHHNICEFNIR-------SQGFLWHQI 206
+ S N+S + NI+ FLWHQ+
Sbjct: 464 IELLDPKTKPLSYLGQPGFGPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQV 523
Query: 207 RCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------D 257
R + ++LFLVGQG E P II +L+D+E+ PR+P Y + PL L+ F D
Sbjct: 524 RHLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVFPDESSGSRED 583
Query: 258 NLTWHY 263
+ W Y
Sbjct: 584 AMNWVY 589
>gi|154276726|ref|XP_001539208.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414281|gb|EDN09646.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 555
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 150/335 (44%), Gaps = 82/335 (24%)
Query: 2 RPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLI----------EDKEKS 48
R IALK Y G Y+G++ T+ TI L KAL+K LI E S
Sbjct: 90 RFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGVSSTEPS 149
Query: 49 SFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDN---ELPYLKMLNNNLPRDIKVVA 105
+ +SGV ++L S E+S D+ ELPY+ +LN LP DI+V+A
Sbjct: 150 TATSTDAYNSGVENLLGGLSLSGSE--NSETEDSWDDIADELPYITILNRVLPEDIRVLA 207
Query: 106 WSP-VPEKYSARFDCLFRNYKYWFPQAG-------------------------------- 132
W P P + ARF C R Y+Y+F Q
Sbjct: 208 WCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLGEGSGAPHNEQF 267
Query: 133 ----LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT------------ 176
LDI+AM K A+YL+G+HDFRN CK++ + N R + HA +
Sbjct: 268 REGWLDIEAMRKGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLDPKTKPLSYL 327
Query: 177 -------------SAWQNVQFNDSHHNICEFNIRSQG--FLWHQIRCIMSVLFLVGQGNE 221
A N D N+ ++I G FLWHQ+R + ++LFLVGQG E
Sbjct: 328 RQHEFTTFDTENDKAAANGSIGDPSSNLKVYSITIHGSAFLWHQVRHLAAILFLVGQGLE 387
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
P II +L+D+EK+PR+P Y + PL L+ F
Sbjct: 388 APSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 422
>gi|393219515|gb|EJD05002.1| tRNA pseudouridine synthase [Fomitiporia mediterranea MF3/22]
Length = 523
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 161/349 (46%), Gaps = 81/349 (23%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSFAC----CGR 55
R IALK Y G+ Y+G IQ T+ L AL +C + D AC CGR
Sbjct: 56 RKIALKFCYSGWEYNGLVIQNDKTRLPTVEGTLYNAL-ASCKLIDGAAGPQACGWERCGR 114
Query: 56 TDSGVSAFCQVVTLKIRSKL------TSP--------------GEESDDN---------- 85
TD GVS+ QVV+L +RS + T P G+E+ D+
Sbjct: 115 TDVGVSSAAQVVSLWVRSNIGQADEQTGPPSNQTESSSIRIEDGQENPDSDFLPDPESEL 174
Query: 86 ------------------------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
EL YL +LN LP I+++AWSPV +S+RF+C
Sbjct: 175 PQLDASEVESAPLPAIHELVERRQELRYLTILNRILPPSIRIIAWSPVSSSFSSRFNCKH 234
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA--W 179
R+YKY+F GL IDAM AA LVG HDFRNLCK++ + FRR ++ A ++ A
Sbjct: 235 RHYKYFFSPEGLSIDAMRDAAARLVGDHDFRNLCKLDPSKQLTVFRRNISRADISPASVL 294
Query: 180 QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD-------- 231
N ++ F++ FL++Q+R IM++L LVG G E P ++ L++
Sbjct: 295 ANDDLASDRSHMYVFDLIGNAFLYNQVRHIMAILLLVGAGLEPPCVMTSLLNADPERPEP 354
Query: 232 --IEKYPR------KPVYPMVRGEPLNLYHTEFD--NLTWHYDEIEVSH 270
+E P KP Y M PL L+ +D ++ W D E H
Sbjct: 355 PFLESDPPPELVTCKPEYQMADPLPLVLWECAYDDKDVKWQTDSPEKKH 403
>gi|170583043|ref|XP_001896407.1| tRNA pseudouridine synthase family protein [Brugia malayi]
gi|158596407|gb|EDP34752.1| tRNA pseudouridine synthase family protein [Brugia malayi]
Length = 234
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 14/189 (7%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL +Y G+ Y+G Q T+ + KAL KT L+E+ E S+ GRTD GVS
Sbjct: 30 RRIALMFMYFGWEYNGLVEQREIARTVEEEMRKALIKTKLVENWENCSWNRSGRTDKGVS 89
Query: 62 AFCQVVTLKIRSK------------LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV ++ +RS + E + EL Y+KMLN+ LP +I+V+AW+PV
Sbjct: 90 AFKQVASVIVRSNEPEGEGVFWPNVAHASSETAMKGELQYVKMLNSTLPTNIRVLAWAPV 149
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV--NFR 167
P +SAR++C R Y Y FP+ +I+AM +A Q+LVG HDFRN C++++ V N+
Sbjct: 150 PRNFSARYNCTQRTYTYAFPRTNFNIEAMRQACQFLVGEHDFRNFCRIDMNKKRVEMNYI 209
Query: 168 RLVTHAGVT 176
R +T+A ++
Sbjct: 210 RTITYADIS 218
>gi|108743226|dbj|BAE95392.1| pseudouridine synthase [Saccharomyces bayanus]
Length = 215
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 12/179 (6%)
Query: 86 ELPYLKMLNNNLPRDIKV--VAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQ 143
E+PY+++LN LP DI++ V P P + ARF C R+YKY F LDI M KAA
Sbjct: 1 EIPYVQILNQLLPDDIRISAVCLRP-PPGFDARFSCTRRHYKYVFNGRHLDITKMSKAAS 59
Query: 144 YLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLW 203
Y +G +DFRN CK++ + F+R + A + + +D+ + F++ FLW
Sbjct: 60 YFLGENDFRNFCKLDGSKQLTKFKRTIVSAEI------LPVSDTFYC---FDLVGSAFLW 110
Query: 204 HQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
HQ+RC+M++LFLVGQ +E+PEI+ L+DIEK P+KPVY M PL LY F + W
Sbjct: 111 HQVRCMMAILFLVGQTHEEPEIVLCLLDIEKTPQKPVYDMADEIPLLLYDCTFPPMEWQ 169
>gi|302495964|ref|XP_003009994.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371]
gi|291173519|gb|EFE29349.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371]
Length = 409
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 129/273 (47%), Gaps = 66/273 (24%)
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEES--DD--NELPYLKMLNNNLPRDIKVVAWSP-VPE 111
DS V+ + +S ++ GE DD +ELPY+++LN LP DI+V+AW P +P
Sbjct: 2 DSVVATKSGMSDRNTQSGVSDTGEAKGWDDIADELPYIQILNGALPEDIRVLAWCPHLPP 61
Query: 112 KYSARFDCLFRNYKYWFPQAG-----------------------------LDIDAMHKAA 142
+ ARF C R Y+Y+F Q LDI+AM +AA
Sbjct: 62 DFDARFSCRQRRYRYFFTQPAFCPTPGARGIVRSSELKDDLSLERPREGWLDIEAMREAA 121
Query: 143 QYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV--------------------------- 175
QY VG+HDFRN CK++ + NF R + A +
Sbjct: 122 QYFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGSRN 181
Query: 176 TSAWQNVQ-FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
T +N+ N + + F + FLWHQIR ++ +LFLVGQG E P I+ +L+D+ K
Sbjct: 182 TGVPENINDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTK 241
Query: 235 YPRKPVYPMVRGEPLNLYHTEF----DNLTWHY 263
PR+PVY M PL L+ F D L W Y
Sbjct: 242 NPRRPVYEMASDSPLVLWDCIFGEEEDELDWVY 274
>gi|154320712|ref|XP_001559672.1| hypothetical protein BC1G_01828 [Botryotinia fuckeliana B05.10]
Length = 575
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 134/276 (48%), Gaps = 60/276 (21%)
Query: 85 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG----------- 132
+E+PY ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 222 DEIPYPQVLNRLLPPDIRILAWCPSPPIDFSARFSCRERRYRYFFTQPAFSPIPSQLEHG 281
Query: 133 ----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV------T 176
LDIDAM +AA+ G HDFRN CK++ G + NF R + +A + T
Sbjct: 282 TSASKMKDGWLDIDAMREAARLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVDDYT 341
Query: 177 SAWQNV---QFNDSH-----------HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
S+ V F D I F++ FLWHQ+R ++++LFLVGQG EK
Sbjct: 342 SSLAYVNGGSFLDESVRSKADGEIKAPKIYTFDLHGSAFLWHQVRHMVAILFLVGQGLEK 401
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLTWHY---------D 264
P ++ +L+D+EK P +P Y M PL L+ F D L WHY
Sbjct: 402 PSVVTELLDVEKNPGRPTYEMATDTPLVLWDCIFPHEDDESRTDALDWHYIGDSPGFSEG 461
Query: 265 EIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRES 300
+ + ++ DL + W I + + GE++ R+
Sbjct: 462 KFGQAGLMDDLWKVWRERKIDSILAGELMGIVSRQG 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKTCLIEDK------------EK 47
R IALK+ Y G Y+GF+ + TI L +AL K LI + E
Sbjct: 58 RLIALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPLAPGEVNWEG 117
Query: 48 SSFACCGRTDSGVSAFCQVVTLKIRSKLTSP 78
++ CGRTD GVSAF QV+ +++RS P
Sbjct: 118 CEYSKCGRTDKGVSAFGQVIGIRVRSNRPLP 148
>gi|347838967|emb|CCD53539.1| similar to pseudouridylate synthase 3 [Botryotinia fuckeliana]
Length = 608
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 134/275 (48%), Gaps = 60/275 (21%)
Query: 85 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG----------- 132
+E+PY ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 255 DEIPYPQVLNRLLPPDIRILAWCPSPPIDFSARFSCRERRYRYFFTQPAFSPIPSQLEHG 314
Query: 133 ----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV------T 176
LDIDAM +AA+ G HDFRN CK++ G + NF R + +A + T
Sbjct: 315 TSASKMKDGWLDIDAMREAARLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVDDYT 374
Query: 177 SAWQNV---QFNDSH-----------HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
S+ V F D I F++ FLWHQ+R ++++LFLVGQG EK
Sbjct: 375 SSLAYVNGGSFLDESVRSKADGEIKAPKIYTFDLHGSAFLWHQVRHMVAILFLVGQGLEK 434
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLTWHY---------D 264
P ++ +L+D+EK P +P Y M PL L+ F D L WHY
Sbjct: 435 PSVVTELLDVEKNPGRPTYEMATDTPLVLWDCIFPHEDDESRTDALDWHYIGDSPGFSEG 494
Query: 265 EIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRE 299
+ + ++ DL + W I + + GE++ R+
Sbjct: 495 KFGQAGLMDDLWKVWRERKIDSILAGELMGIVSRQ 529
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKTCLIEDK------------EK 47
R IALK+ Y G Y+GF+ + TI L +AL K LI + E
Sbjct: 91 RLIALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPLAPGEVNWEG 150
Query: 48 SSFACCGRTDSGVSAFCQVVTLKIRSKLTSP 78
++ CGRTD GVSAF QV+ +++RS P
Sbjct: 151 CEYSKCGRTDKGVSAFGQVIGIRVRSNRPLP 181
>gi|226288982|gb|EEH44494.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 574
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 152/363 (41%), Gaps = 108/363 (29%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKSSFACCGRTDS 58
R IALK Y G Y G++ + TI L KAL+K LI F D
Sbjct: 93 RFIALKFAYLGQRYGGYEHSNGNITPLPTIEEELWKALRKARLI-------FPQSVEGDG 145
Query: 59 GVSAFCQVVTLKI--------RSKLTSP--------GEESDD--------NELPYLKMLN 94
V T +I RS +P EESD+ +ELPY+ +LN
Sbjct: 146 QAQVERAVATPEISSTTPDAYRSGAETPLVGASGCASEESDNEDEWDDIADELPYITILN 205
Query: 95 NNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG--------------------- 132
LP DI+V+AW P P + ARF C R Y+Y+F Q
Sbjct: 206 KVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGSDQKSSG 265
Query: 133 -------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV---- 175
LDI+AM + A+YL+GTHDFRN CK++ + N R + HA +
Sbjct: 266 SDSYPSTELREGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQITNHVRHIYHADIELLD 325
Query: 176 ----------TSAWQNVQ----------------FNDSHHNICEFNIRSQGFLWHQIRCI 209
+Q ++ + S+ I I FLWHQ+R +
Sbjct: 326 PQTKPLSYLGQPEFQALEAGNGEVDRNLVTKDSLLSSSNMKIYSITIHGSAFLWHQVRHL 385
Query: 210 MSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLT 260
++LFL+GQG E+P II +L+DIEK PR+P Y + PL L+ F D L
Sbjct: 386 AAILFLIGQGLERPSIIPELLDIEKNPRRPTYEIASDAPLVLWDCIFPHGRSGSREDGLD 445
Query: 261 WHY 263
W Y
Sbjct: 446 WVY 448
>gi|430768618|ref|NP_001258914.1| tRNA pseudouridine(38/39) synthase isoform 2 [Homo sapiens]
Length = 273
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Query: 138 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFN--DSHHNICEFN 195
M AAQ VGTHDFRNLCKM+V NGV+NF+R + A V Q+ +C+F
Sbjct: 1 MDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFE 60
Query: 196 IRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTE 255
+ Q FL+HQ+RC+M++LFL+GQG EKPEII +L++IEK P+KP Y M PL LY +
Sbjct: 61 VTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 120
Query: 256 FDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK--DTV 297
F+N+ W YD+ + L + W+ ++K ML M++ DTV
Sbjct: 121 FENVKWIYDQEAQEFNITHLQQLWANHAVKTHMLYSMLQGLDTV 164
>gi|388857792|emb|CCF48686.1| related to DEG1-pseudouridine synthase [Ustilago hordei]
Length = 650
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 143/316 (45%), Gaps = 84/316 (26%)
Query: 2 RPIALKILYQGFNYHGFQIQT-------SSDNTIAHHLLKALQKTCLIEDK---EKSSFA 51
R IAL+ Y G Y G Q SS T+ L AL L++ + + F+
Sbjct: 78 RKIALRFSYDGAGYSGLAAQNVTPHGTGSSLPTVEGVLWDALCTARLVDPSLGMDGAGFS 137
Query: 52 CCGRTDSGVSAFCQVVTLKIRSK----------------------------LTSPGEESD 83
CGRTD GVSA QVV L +RSK + +
Sbjct: 138 RCGRTDRGVSAAGQVVALWVRSKKVNHWVDRVSLQSSFPSPSPLPPLSEELEEKRKAKLE 197
Query: 84 DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ------------- 130
ELPY+++LN LP I++ AWSPV +SARFDC +R+YKY+FP
Sbjct: 198 KVELPYVQILNRILPPTIRIQAWSPVRANFSARFDCTYRHYKYFFPSGPPSVFLPPNSPF 257
Query: 131 -------AGLDIDA-------MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV- 175
AG+D +A M AA+ L+G HDFRNLCK++ + N+RR + +
Sbjct: 258 PSSSSTSAGVDAEATRLDIGLMRDAAKRLLGEHDFRNLCKVDASKQITNYRRRIDGVSID 317
Query: 176 ----TSAWQNVQ--------------FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
+S W + N+R FL+HQ+R IM++LFL+G
Sbjct: 318 RVSSSSLWPTTSNPIGEGEVEGGESGEGGEGEGMFVLNLRGTAFLYHQVRNIMAILFLIG 377
Query: 218 QGNEKPEIIQQLVDIE 233
E+PE+I++L++ +
Sbjct: 378 ARLERPEVIEELMNTQ 393
>gi|412990717|emb|CCO18089.1| predicted protein [Bathycoccus prasinos]
Length = 473
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 159/342 (46%), Gaps = 63/342 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQ----------TSSDN-----TIAHHLLKALQKTCLIEDKE 46
R IAL++ Y G N+ GF Q T++ N TI L +AL+K C + D
Sbjct: 43 RKIALELAYCGANHFGFSSQGCLQASNAETTNAKNNSHIRTIEGALFEALKK-CRLVDPS 101
Query: 47 KSSF-------ACCGRTDSGVSAFCQVVTLKIRSK----------LTSPGEESDDNELPY 89
K F + CGRTD GVS+ VV+L +R K + + E+ Y
Sbjct: 102 KEIFGEPSVDYSRCGRTDRGVSSIGNVVSLNVRCKGVGGGGGGEDEEDDEDGENGEEIDY 161
Query: 90 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF-----------PQAG------ 132
+ LN LP D++ + W VP+ +S+RF+C R Y+Y F P+ G
Sbjct: 162 VGNLNRALPDDVRALCWYAVPDGFSSRFNCTSRRYEYHFTRVVRQNLAPPPRGGEEAGKC 221
Query: 133 -----LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV----TSAWQNVQ 183
LD+ M +A + LVGTHDFRN CKMNV + ++ R + + T
Sbjct: 222 EPEEILDVGRMREACEKLVGTHDFRNFCKMNVKD-CRDYTRHIKECRIEKKNTERTTGAL 280
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
++ + I FLWH +RCI +VLF VG + P+II L+D+ K PRKP+Y M
Sbjct: 281 LRETDWVLI---IEGSSFLWHMVRCIAAVLFQVGLRADAPDIIDDLLDLTKTPRKPLYAM 337
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIK 285
L L E+D+ + + VS R E +L + +
Sbjct: 338 APEHSLVLVGCEYDDSVINPGKRRVSEEARQGLEMHALAAAR 379
>gi|302789057|ref|XP_002976297.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii]
gi|300155927|gb|EFJ22557.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii]
Length = 175
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
Query: 86 ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYL 145
E+ Y+ LN LP DI+V+ W PVP + ARF CL+R YKY+F GL+IDAM +A+Q L
Sbjct: 1 EIDYVSSLNRALPADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQASQRL 60
Query: 146 VGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQ 205
+G HDFRN CKM+ N + N+ R + + + + ++R FLWHQ
Sbjct: 61 LGEHDFRNFCKMDADN-IHNYTRQILAFDILPIEECLWV---------MHVRGNAFLWHQ 110
Query: 206 IRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWH 262
+RC+ +VLF++G+G+E II L+D++K RKP Y M PL L F L ++
Sbjct: 111 VRCMAAVLFMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVLQSCAFQGLRFY 167
>gi|156040419|ref|XP_001587196.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980]
gi|154696282|gb|EDN96020.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 592
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 136/276 (49%), Gaps = 60/276 (21%)
Query: 85 NELPYLKMLNNNLPRDIKVVAWSPVPE-KYSARFDCLFRNYKYWFPQAG----------- 132
+E+PY ++LN LP DI+++AW P P +SARF C R Y+Y+F Q
Sbjct: 222 DEIPYPQVLNRLLPPDIRILAWCPSPPVDFSARFSCRERRYRYFFTQPAFSPIPSQLEHG 281
Query: 133 ----------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV------T 176
LDI+AM +AA+ G HDFRN CK++ G + NF R + +A + T
Sbjct: 282 ASASKMKDGWLDIEAMREAAKLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVKDYT 341
Query: 177 SAWQNVQ----FNDSHHN----------ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
S+ V +DS + + F++ FLWHQ+R ++++LFLVGQG EK
Sbjct: 342 SSLAYVNGDSFLDDSIRSKIDGESKAPKVYTFDLHGSAFLWHQVRHMVAILFLVGQGLEK 401
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLTWHY---------D 264
P ++ +L+D+EK P +P Y M PL L+ F D L WHY
Sbjct: 402 PSVVSELLDVEKNPGRPAYEMATDTPLVLWDCIFPHEDDESRTDALDWHYIGDSPGFSEG 461
Query: 265 EIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRES 300
+ + ++ DL + W I + + GE++ R+
Sbjct: 462 KYGQAGLMDDLWKVWRERKIDSILAGELMGIASRQG 497
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKTCLIEDK------------EK 47
R IALK+ Y G Y+GF+ + TI L +AL K LI + E
Sbjct: 58 RLIALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPMAPGEVNWEG 117
Query: 48 SSFACCGRTDSGVSAFCQVVTLKIRS-------KLTSPGEESDDNELPYLKMLNNNLPRD 100
++ CGRTD GVSAF QV+ +++RS K EES + ++ + N PR+
Sbjct: 118 CEYSKCGRTDKGVSAFGQVIGIRVRSNRPLAKPKAKPASEESVEGKIAAEDDMYNTYPRE 177
>gi|441644257|ref|XP_004090575.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 2 [Nomascus
leucogenys]
Length = 273
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 2/159 (1%)
Query: 138 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFN--DSHHNICEFN 195
M AAQ VGTHDFRNLCKM+V NGVVNF+R + A V Q+ +C+F
Sbjct: 1 MDYAAQKYVGTHDFRNLCKMDVANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFE 60
Query: 196 IRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTE 255
+ Q FL+HQ+RC+M++LFL+GQG EKPE+I +L++IEK P+KP Y M PL LY +
Sbjct: 61 VTGQAFLYHQVRCMMAILFLIGQGMEKPELIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 120
Query: 256 FDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
F+N+ W YD+ + L + W+ ++K ML M++
Sbjct: 121 FENVKWIYDQEAQEFNITHLQQLWANHAVKTHMLYSMLQ 159
>gi|224007503|ref|XP_002292711.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971573|gb|EED89907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 162
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 92 MLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 151
+LNN LP I+++ W PV ++SARF C R Y+Y+FP+ LD+ AM + QY++G HDF
Sbjct: 1 VLNNVLPPSIRILGWCPVSPEFSARFSCGQRTYRYFFPRRNLDLSAMAQGLQYMMGRHDF 60
Query: 152 RNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMS 211
RNLCKMN H + Q+ S ++C I Q FLWHQIRCIMS
Sbjct: 61 RNLCKMNCEQNEGE------HPVIQPTEQSK--PSSSRDMCHVEIVGQAFLWHQIRCIMS 112
Query: 212 VLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
+LF VG+ E P+I+QQL DI+ P KP Y M L L F L
Sbjct: 113 ILFYVGRQLETPQIVQQLFDIQTNPAKPSYEMASETALVLQDCTFGQL 160
>gi|390596437|gb|EIN05839.1| pseudouridine synthase [Punctularia strigosozonata HHB-11173 SS5]
Length = 538
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 173/397 (43%), Gaps = 85/397 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IALK Y G Y G Q S+ T+ L AL T L++ + + + CGRT
Sbjct: 67 RKIALKFSYAGSEYSGLAYQKLPSALPTVEGVLWDALTYTRLVDGPAGMDATGWEKCGRT 126
Query: 57 DSGVSAFCQVVTLKIRSKLT--------------------------------SPGEESD- 83
D+GVS+ QV++ +RS L PG E D
Sbjct: 127 DAGVSSAGQVISFWVRSNLDENAVNTLSTARSQQEHPAPQQPSAESVQDSDDGPGLEGDL 186
Query: 84 ---------------------DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
E Y+ MLN LP I+V+AWSPV +SAR +C +R
Sbjct: 187 GFMGDLEPEAGPVALPTHLQKKAEFRYISMLNRVLPPTIRVLAWSPVAPDFSARHNCKYR 246
Query: 123 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNV 182
+YKY+F L+IDAM AA LVG HDFRNL ++ + +F R + A ++ +
Sbjct: 247 HYKYFFDAERLNIDAMRDAASRLVGEHDFRNLSTLDPSKQLTSFNRRILRAEISPVAPEM 306
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV------------ 230
+ H F++ + FL++Q+R IM+VL LVG E P ++ L+
Sbjct: 307 KCAGGMHV---FDLVGRAFLFNQVRRIMAVLMLVGTELEPPSVVSALLNADPEHPAPAWC 363
Query: 231 DIEKYP----RKPVYPMVRGEPLNLYHTEFD--NLTWHYDEIEVSHVLRDLHEDWSLLSI 284
D E P R PVY M PL L+ +D ++ W+ D + + + ++ +
Sbjct: 364 DAEDPPPVLERSPVYRMADPLPLVLWDCGYDDADVRWYVDGDDPTDA--GVAQEEGTVGG 421
Query: 285 KATMLGEMIKDTVRESKCTMGDLDINHLIE-GEFSRP 320
+ + +M D++RE LD + + + RP
Sbjct: 422 DSHLYAQM--DSIRERSAIHAALDAHFVASLARYHRP 456
>gi|406864676|gb|EKD17720.1| pseudouridylate synthase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 1054
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 139/297 (46%), Gaps = 63/297 (21%)
Query: 85 NELPYLKMLNNNLPRDIKVVAWSPVP-EKYSARFDCLFRNYKYWFPQAG----------- 132
+E+PY +LN LP DI+++AW P P + +SARF C R Y+Y+F Q
Sbjct: 689 DEIPYCSLLNRLLPPDIRILAWCPAPPQDFSARFSCRERQYRYFFTQPAFMPTPPQLEVP 748
Query: 133 -----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
L+I M +AA+ G HDFRN CK++ G + NF R + +A +
Sbjct: 749 TQKGQTVAMEGKMRDGWLNIKKMREAAKLFEGIHDFRNFCKVDPGKQISNFERRIFYADI 808
Query: 176 ------TSAWQNVQFND-SHHN--------ICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
TS V D + H+ + F + FLWHQ+R +++VLFLVGQG
Sbjct: 809 EEVDDSTSGLAFVNGADFAPHSTRQAVNPKVYTFTLHGSAFLWHQVRHMVAVLFLVGQGL 868
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLTWHY-------- 263
EKP I+ +L+D+E P +PVY M PL L++ F D + WHY
Sbjct: 869 EKPSIVSELLDVETNPGRPVYEMATDTPLVLWNCVFPQEDDAERKDAIQWHYVGDDPNSG 928
Query: 264 -DEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRESKCTMGDLDINHLIEGEFSR 319
+ + ++ +L + W + + ++ ++ + GDL + +G S+
Sbjct: 929 DQKYGTAGIMDELWKVWRERKVDEILASTLLGVIAKQGR-PAGDLSVGEPKKGSRSQ 984
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLI------------EDKEK 47
R +A K+ Y G Y+GF+ Q S TI L KA K LI + +
Sbjct: 516 RLVAFKLAYLGKRYNGFECQKSVTPLPTIEEELWKAFNKARLIFPDVVNPRQPGEVNWDG 575
Query: 48 SSFACCGRTDSGVSAFCQVVTLKIRS 73
++ CGRTD GVSAF QV+ +++RS
Sbjct: 576 CEYSKCGRTDKGVSAFGQVIGIRVRS 601
>gi|159118829|ref|XP_001709633.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803]
gi|157437750|gb|EDO81959.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803]
Length = 531
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 144/316 (45%), Gaps = 59/316 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSS---FACCGRTD 57
+R IA+++ Y G Y G Q + + TI LL AL+ LI ++S F GRTD
Sbjct: 90 LRHIAIQVCYDGTEYAGLAQQPNREYTIEELLLNALRGAALIPQHAEASDVHFERSGRTD 149
Query: 58 SGVSAFCQVVTLKIRSK-----------------------LTSPGEESD----------- 83
GVSA QV + +R+ LT P + SD
Sbjct: 150 RGVSAAGQVFSFYVRTNNKGMGPQPIPAPDPRFYRDRRDGLTPPAKPSDSATDDRGADGD 209
Query: 84 ---------------DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWF 128
+ E+ Y+ +N LP I+V+ W+PV E +SAR R Y Y F
Sbjct: 210 LVNAEKEPELKQVPQEQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYVYMF 269
Query: 129 PQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA-----GVTSAWQNV 182
+ G L+I M +A LVG HDFRN+CK ++ + + F R++ G +N
Sbjct: 270 GEVGSLNIRRMAEACTKLVGFHDFRNICKPSL-DSIKTFERVIFSCFLEIDGQPYDCEND 328
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
+ ++ + FL+HQIRCI S+L +G E P +I L+++E++P KP YP
Sbjct: 329 RMAMKENSTLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNVEQFPGKPDYP 388
Query: 243 MVRGEPLNLYHTEFDN 258
+ GE L E+ +
Sbjct: 389 IAPGELLLFERAEYTS 404
>gi|212526856|ref|XP_002143585.1| pseudouridylate synthase 3 [Talaromyces marneffei ATCC 18224]
gi|210072983|gb|EEA27070.1| pseudouridylate synthase 3 [Talaromyces marneffei ATCC 18224]
Length = 630
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 165/409 (40%), Gaps = 147/409 (35%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLIEDKEKS---------- 48
R IALK Y G Y+GF+ + TI + KAL+KT LI S
Sbjct: 98 RHIALKFAYLGQRYNGFEHANGNATPLPTIEEEIWKALRKTRLIFPTTTSPMELSLDRHD 157
Query: 49 ------------SFACCGRTDSGVSAFCQVVTLKIRSKL--------------------- 75
++ CGRTD GVSAF QV+ +++RS
Sbjct: 158 RTQPFDLSWDGCQYSKCGRTDRGVSAFGQVIGIRVRSARPKRKVETATSTNVTTTTTGEE 217
Query: 76 ---------TSPGEESDDNELPYL--------------------------KMLNNNLPRD 100
TS + + DN P L ++LN LP+D
Sbjct: 218 TTLQPVDVETSVIDSTKDNVEPNLDVEVQPLDEIEEDDGWDDIRDELPYIQVLNGVLPQD 277
Query: 101 IKVVAWSPVP-EKYSARFDCLFRNYKYWF------PQAG--------------------- 132
I+++AW P P + ARF C R Y+Y+F P AG
Sbjct: 278 IRILAWCPNPGPDFDARFSCRERQYRYFFTQPAFNPIAGELGFLRSAAHHRGIAKKELRD 337
Query: 133 --LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV------TSAWQNVQF 184
LDI+AM +A ++ VG HDFRN C+++ + NF R++ A + T+ V
Sbjct: 338 GWLDIEAMREACKHYVGRHDFRNFCRVDTSKQIENFERIIYRASIDLVDPRTNPLGYVGS 397
Query: 185 ND-----------SHHNICE----------FNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
D + N+ E F + FLWHQ+R +++VLFLVGQG E P
Sbjct: 398 KDFQPTRNPVDMPNGSNVNEEQPSTPLVYTFTLHGSAFLWHQVRHMVAVLFLVGQGVESP 457
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF---------DNLTWHY 263
I+ +L+DI K P KP Y M PL L+ F D+L W Y
Sbjct: 458 SIVPELLDISKNPCKPTYEMASDAPLVLWDCIFPDEESGSREDSLNWIY 506
>gi|308161029|gb|EFO63491.1| Pseudouridylate synthase, putative [Giardia lamblia P15]
Length = 515
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 141/308 (45%), Gaps = 53/308 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSS---FACCGRTD 57
+R IA+++ Y G Y G Q + + TI LL AL+ LI +S F GRTD
Sbjct: 80 LRHIAIQVCYDGTEYAGLAQQPNKEYTIEELLLNALRDAALIPQYATASDVHFERSGRTD 139
Query: 58 SGVSAFCQVVTLKIRSK-----------------------LTSPGEESD----------- 83
GVSA QV + R+ LT P + +D
Sbjct: 140 RGVSAAGQVFSFYARTNNKAMTPQSIPVPDPRFYRDRRDGLTPPAKPNDNVDGDLVNSEK 199
Query: 84 ---------DNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAG-L 133
+ E+ Y+ +N LP I+V+ W+PV E +SAR R+Y Y F Q G L
Sbjct: 200 EPELKQVPQEQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRHYIYTFGQIGSL 259
Query: 134 DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA-----GVTSAWQNVQFNDSH 188
+I M +A LVG HDFRN+CK ++ + + F R++ G +N +
Sbjct: 260 NIRRMAEACTKLVGFHDFRNICKPSL-DSIKTFERVIFSCYLEIDGQPYECENDRMVIKE 318
Query: 189 HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEP 248
++ + FL+HQIRCI S+L +G E P +I L++IE +P KP YP+ GE
Sbjct: 319 NSSLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNIENFPGKPDYPIAPGEL 378
Query: 249 LNLYHTEF 256
L E+
Sbjct: 379 LLFEKAEY 386
>gi|386002925|ref|YP_005921224.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
gi|357210981|gb|AET65601.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
Length = 269
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 35/280 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A K+ Y G YHGFQ+Q ++ T+ + +AL ++ I D SF GRTD GVSA
Sbjct: 3 VAFKLGYLGRGYHGFQLQPAAP-TVQAVVGRAL-RSLGIND---GSFCYAGRTDRGVSAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ + + +L +++N+ LP D+ AW+PVPE +SAR L+R
Sbjct: 58 GQVIDFYV---------QPAKADLAVPRVVNSRLPTDVWAWAWAPVPENFSARHAALWRE 108
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y P GLD++AM +AA L+G HDFRNL G + N +L
Sbjct: 109 YRYHLPGGGLDLEAMREAAGELLGVHDFRNLSSEKRGPSIRNLMKLDL------------ 156
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR--KPVY 241
I ++R+ GFLW+ +R + VL LVG G+ ++ L+D PR + V
Sbjct: 157 --TEERGIVVIDVRADGFLWNMVRKMAKVLELVGSGDRDLAWVEALLD----PRTNRGVA 210
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSL 281
P E L + + + W+ + + L + W +
Sbjct: 211 P-APAEGLVMMDVGYPGVNWNIEPYSMRMAKERLDKAWKI 249
>gi|253744705|gb|EET00865.1| Pseudouridylate synthase, putative [Giardia intestinalis ATCC
50581]
Length = 507
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 142/312 (45%), Gaps = 57/312 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSS---FACCGRTD 57
+R IA+++ Y G Y G Q++ + TI LL AL+ LI ++ F GRTD
Sbjct: 69 LRHIAIQVCYDGTEYAGLAQQSNKEYTIEELLLNALRDAALIPQHATANDIHFERSGRTD 128
Query: 58 SGVSAFCQVVTLKIRS---KLT-------------------SPGEESDDN---------- 85
GV A QV + R+ ++T +P + +DN
Sbjct: 129 RGVIAAGQVFSFYARTNNKEITPRPIPAPDPRFYRDRRDGMAPPTKPNDNFDETRGGDTV 188
Query: 86 ---------------ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ 130
E+ Y+ +N LP I+V+ W+PV E +SAR R Y Y F Q
Sbjct: 189 SVGKEPELKQVPQEVEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYIYTFGQ 248
Query: 131 AG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHH 189
G L+I M +A LVG HDFRN+CK ++ N V F R++ + Q + S
Sbjct: 249 VGSLNIQRMAEACTTLVGFHDFRNICKPSLDN-VKTFERVIFSCQLEIDGQPYECEGSRA 307
Query: 190 NICE-----FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMV 244
+ E + FL+HQ+RCI S+L +G E P II L+D+ ++P KP YP+
Sbjct: 308 AVSEDSSLSLVVCGSAFLYHQVRCIASLLLHIGAELEPPSIISDLLDVTRFPGKPDYPIA 367
Query: 245 RGEPLNLYHTEF 256
GE L E+
Sbjct: 368 PGELLIFEKAEY 379
>gi|409043129|gb|EKM52612.1| hypothetical protein PHACADRAFT_211852 [Phanerochaete carnosa
HHB-10118-sp]
Length = 548
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 21/202 (10%)
Query: 82 SDDN-ELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHK 140
SD+N EL Y+ LNN LP I+V+AWSPV E +SAR++C +R+YKY+F GL+ AM
Sbjct: 224 SDNNDELKYVSSLNNILPPSIRVLAWSPVSEDFSARYNCRYRHYKYFFLSRGLNTKAMCD 283
Query: 141 AAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQG 200
A+ LVG HDFRNL K++ + FRR + A + ++ S + F++
Sbjct: 284 GAERLVGEHDFRNLHKLDPAKQLTTFRRRILRAEINPV--DITDRGSPSQMYVFDLVGTA 341
Query: 201 FLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE---KYPR-------------KPVYPMV 244
FL++Q+R IM++LFL+G G E+P I+ L++ + YP KP+Y M
Sbjct: 342 FLYNQVRHIMAILFLIGAGLEEPSIMTTLLNTDPDNPYPSYRLGEPVPSVVTTKPIYQMA 401
Query: 245 RGEPLNLYHTEF--DNLTWHYD 264
PL L+ T F +++W D
Sbjct: 402 DALPLVLWDTGFASGDVSWRTD 423
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDK---EKSSFACCGRT 56
R IALK Y G ++G FQ + T+ L +AL T L++ E + CGRT
Sbjct: 77 RKIALKFSYDGTFFNGLEFQRDPTPLPTVEEVLWRALLHTRLVDPAGGMEGVGWEKCGRT 136
Query: 57 DSGVSAFCQVVTLKIRSKL 75
D GVSA QVV+ +IRS L
Sbjct: 137 DCGVSAAGQVVSFRIRSAL 155
>gi|449017039|dbj|BAM80441.1| pseudouridine synthase 3 [Cyanidioschyzon merolae strain 10D]
Length = 467
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 144/315 (45%), Gaps = 56/315 (17%)
Query: 1 MRPIALKILYQGFNY-HGFQIQ-----TSSDN--------TIAHHLLKALQKTCLIED-- 44
+R IALK+ YQG+++ GF Q TSS ++ L AL+K L+ +
Sbjct: 49 VRKIALKLAYQGWSFPSGFAAQPADFSTSSAGKLSGIAFKSVESALFYALEKVNLVPNLH 108
Query: 45 --------------------KEKSS---------FACCGRTDSGVSAFCQVVTLKIRSKL 75
+EK +A GRTD GVSA QVV+L +R
Sbjct: 109 WFVGSDGTCATGVSPNRPLSREKFGETWAVKGWQYARGGRTDKGVSAIGQVVSLLVRC-- 166
Query: 76 TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLD- 134
P + N Y+ +LN LP ++V AW+PV + +SARF R YKY+ P D
Sbjct: 167 --PPPGTGTNFYDYIHLLNRELPASVRVYAWAPVADDFSARFSAYSRTYKYFVPNVFSDE 224
Query: 135 -IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICE 193
I +M AA+ +VG HDF N CK + N R++ V A I E
Sbjct: 225 GICSMVAAAKKMVGRHDFANFCKFDAETTKGNTERVILQCTVELAKDEFYRALFPRGILE 284
Query: 194 FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR---KPVYPMVRGEPLN 250
F I Q FL+HQ+R ++++L +G+G E ++ L+ ++ PR +P Y PL
Sbjct: 285 FTIEGQAFLYHQVRFMIALLLEIGRGTENISLVDSLLGLDGSPRIDPRPQYVQAPEHPLV 344
Query: 251 LYHTEF--DNLTWHY 263
L++ + + W Y
Sbjct: 345 LWNIHYGENEPPWRY 359
>gi|330507400|ref|YP_004383828.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
gi|328928208|gb|AEB68010.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
Length = 271
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 129/290 (44%), Gaps = 37/290 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALK+ Y G NY+GFQ Q T+ + +AL + +I F GRTD GVSA
Sbjct: 3 VALKLAYLGDNYYGFQKQPDR-VTVDSQVRRALAQIGVIH----GDFCYAGRTDRGVSAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ I + D +L + +N LPRDI AWS P +SAR++ L+R
Sbjct: 58 GQVIDFWI---------DEDKIDLTRPRCVNGRLPRDIWTWAWSIAPVGFSARWNALWRE 108
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y GLD D M +AA L+G HDFRN VG V +L
Sbjct: 109 YQYLLWHPGLDRDLMEEAADMLLGEHDFRNFSSAKVGT-VKRVEKLEIR----------- 156
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ F+IR+ GFLW+ +R I+ VG G + + L+ E P P
Sbjct: 157 ---ERDGLFIFDIRADGFLWNMVRKIVGATEKVGSGQKDMRWFKDLLRPELNHGAPTAP- 212
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
E L L +D L W D+ + R L +++ M G M+
Sbjct: 213 --AEGLILMEVGYDGLDWQVDQYSRARAGRMLAG-----TVQKRMAGAMV 255
>gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 275
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 34/295 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSA 62
+ALKI Y G NYHGFQIQ ++ T+ L KAL++ ++ED++ ++++ GRTD GV A
Sbjct: 8 VALKIGYLGTNYHGFQIQPQAELQTVEGELFKALKRLGILEDRKTANYSYAGRTDKGVHA 67
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QVV+ ++ +P +M+N LP DI +A + ++AR + + R
Sbjct: 68 LAQVVSFDTLNQNMTP------------RMINTMLPNDIWALAIAKPHAGFNARKEAIRR 115
Query: 123 NYKYW-FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
Y+Y+ F Q LDI M A++ L+G HDF N + + G + +
Sbjct: 116 EYRYFLFLQTELDISRMRDASELLIGAHDFSNFSQRDGLEG----------KSLIKEIKQ 165
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI---EKYPRK 238
V S I +I + GFL +R I+S L +VG G IQ L+D+ E+
Sbjct: 166 VNIVKSDLFII-IDIAASGFLRKMVREIVSALSMVGSGKRAKSWIQDLLDLKIKEQIEPA 224
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
P + +V L + L + DE + L +D + A +LG+MI
Sbjct: 225 PAFGLV------LKDVSYHELEFVVDEYAKRRITARLKKDLFFHATMAAVLGDMI 273
>gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
Length = 332
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 38/277 (13%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
+I Y G NY+G Q + TI A + LI+++E CGRTD GV +
Sbjct: 29 FRISYIGTNYYGMAYQNETIPTIEREFYNACLRLKLIKNREDCDLIRCGRTDKGVHSTGN 88
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
+++ +R++ TSP Y +M+N LP DI+++ + V +SARFDC R YK
Sbjct: 89 YISINLRTRDTSP--------YNYQEMINGVLPWDIRILGFCQVNNNFSARFDCDSRVYK 140
Query: 126 Y-------------WFPQAGLD-IDAMHKAAQYLVGTHDFRNLCKMNVGN--------GV 163
Y +FP+ ++ ID M+K+ + +GTHDFR CKM++ N +
Sbjct: 141 YIFPIDQIQNFEHNYFPKLNINHIDQMNKSCKQFIGTHDFRVFCKMDIKNRPNQTYVRTI 200
Query: 164 VNFR-RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+FR + + ++S+ + ND+ + I FLWHQ+R ++ +LF + G +
Sbjct: 201 YDFRVEVFNNNKISSSSFDNSINDTKLGV--ITIIGSAFLWHQVRLMVGILFEISLGKIR 258
Query: 223 PEIIQQLVDIEKYPRK---PVYPMVRGEPLNLYHTEF 256
E I +L+D Y K P +PM L L+ F
Sbjct: 259 SECITKLLD--NYFDKDEIPFFPMASEIGLILWDCNF 293
>gi|346975263|gb|EGY18715.1| tRNA pseudouridine synthase [Verticillium dahliae VdLs.17]
Length = 580
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 105/231 (45%), Gaps = 58/231 (25%)
Query: 85 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQAG----------- 132
+ELPY K LN LP DI+++AW P PE +SARF C R Y+Y+F Q
Sbjct: 227 DELPYCKTLNRLLPPDIRILAWCPSTPEGFSARFSCTERQYRYYFTQPAFAPAPEGLTPP 286
Query: 133 ------------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
LDIDAM AA+ G HDFRN CK
Sbjct: 287 KGPSQPRKKKDAAPPPPPRPKVGYLDIDAMRNAAKKFEGLHDFRNFCKPETAAAAAAHGG 346
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+G + ++R FLWHQIR ++SVLFLVGQG E+PE++ +
Sbjct: 347 GRGGSGGGVT----------PKVYYLHVRGSAFLWHQIRHMVSVLFLVGQGLERPEVVDE 396
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEF------------DNLTWHYDEIE 267
L+D+E++PRKP Y + PL L+ F D + W ++ E
Sbjct: 397 LLDVERHPRKPNYGLAHEVPLVLWDCIFPTDRSVPEGQQADGMAWEWEAGE 447
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 12/89 (13%)
Query: 2 RPIALKILYQGFNYHGFQIQTSS-DNTIAHHLLKALQKTCLI----EDKEKSSF------ 50
R +AL++ Y G NY+GF+ Q S+ TI L AL K CLI ED ++ F
Sbjct: 79 RYVALRLAYLGKNYNGFEHQQSAVQATIESELWSALTKACLIFPPGEDIDQIDFNYKELD 138
Query: 51 -ACCGRTDSGVSAFCQVVTLKIRSKLTSP 78
+ CGRTD GVSAF QV+ L++RS P
Sbjct: 139 YSKCGRTDKGVSAFGQVIGLRLRSSKPLP 167
>gi|52548278|gb|AAU82127.1| pseudouridylate synthase [uncultured archaeon GZfos10C7]
Length = 284
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 149/297 (50%), Gaps = 33/297 (11%)
Query: 4 IALKILYQGFNYHGFQIQ-TSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSA 62
IALKI Y G NYHGFQIQ S+ TI L KAL+K +IED++ ++++ GRTD+GV A
Sbjct: 10 IALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGIIEDRKTANYSAAGRTDTGVHA 69
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPR-DIKVVAWSPVPEKYSARFDCLF 121
QVV+ ++ T+P +M+N+ LP I V A + ++AR D +
Sbjct: 70 LAQVVSFVTSNQNTTP------------RMINSVLPDGSIWVSAIAKPYSGFNARRDAIS 117
Query: 122 RNYKYW-FPQAGLDIDA--MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
R Y+Y+ F Q LD+D M +A++ VGTHDF N + GN V
Sbjct: 118 REYRYYLFLQTELDLDITRMREASELFVGTHDFSNFSLLQ-GN-----EYEVAGYSTIRD 171
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI---EKY 235
+ ++ + +I + GFL +R I+S L +VG G + I+ L+D+ E
Sbjct: 172 IKRIEVKTKKPFVI-IDIEASGFLRKMVRKIVSALRMVGSGMKDKRWIEDLLDLRIKEGI 230
Query: 236 PRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEM 292
P + +V L + + ++ + DE ++ L ED L + A +LG+M
Sbjct: 231 EPAPAFGLV------LKNVSYRDVKFVEDEYARRRIVTRLKEDLVLHATMAEVLGDM 281
>gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
gi|121692939|sp|A0B7V0.1|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
Length = 267
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 139/291 (47%), Gaps = 32/291 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IALKI Y G Y+GFQ Q T+ + AL + + F GRTD GVSA
Sbjct: 3 IALKIAYLGDRYYGFQRQPGL-RTVESVMRDALLRIGV----ANGDFCYAGRTDRGVSAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ I E D L + +++N+ LP D+ A + P +SAR+ L+R
Sbjct: 58 GQVIDFWI---------EEDRAYLAFPRVINSLLPSDVWAWARAVAPVGFSARWSALWRE 108
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ +D+ A+ +AA +LVGTHDFRN V RR+++ +
Sbjct: 109 YRYFLFSPDIDLSAVREAAGHLVGTHDFRNFSMSKVD----TVRRIIS----------ID 154
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
N +H I F++R++GF+W+ +R I+ L L+G G + + I +L+D P P
Sbjct: 155 VN-AHCGIVVFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLDPSTPHGAPTAP- 212
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
E L L + +L W D V R L + + + ++ EM++
Sbjct: 213 --PEGLMLMDVGYSDLEWEEDRYTKQRVSRMLISEARRRAAMSGVIQEMLR 261
>gi|374628788|ref|ZP_09701173.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
gi|373906901|gb|EHQ35005.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
Length = 260
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 27/239 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IA K+ Y G N+HG Q Q S+ T+ + A LI D++ S F+ GRTD GV A
Sbjct: 3 IAFKLGYFGDNFHGSQ-QQSNRRTVEGEFITACIDLGLIRDRKSSGFSISGRTDRGVHAR 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
CQ+ + T E + + +N LP DI A++ V + Y+ R+D R
Sbjct: 62 CQICSF-----FTDHPERA-------VFAINEKLPGDIWCFAYAEVDDSYNPRYDVFSRK 109
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+F + GLD ++M KA+QY+ G HDF + K+ G R+++ ++
Sbjct: 110 YRYYFYEEGLDHESMQKASQYIKGVHDFTSFAKI---KGKDPERKIL---------ESEV 157
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
F D + + F I FLW+ +RC+ L L G+G PE I+ ++ PR P P
Sbjct: 158 FTDGEYTV--FEIEGHSFLWNMVRCLAYALNLCGKGLLSPEEIRSALENPGMPRYPAMP 214
>gi|378727214|gb|EHY53673.1| hypothetical protein HMPREF1120_01858 [Exophiala dermatitidis
NIH/UT8656]
Length = 713
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 114/257 (44%), Gaps = 81/257 (31%)
Query: 85 NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWF------PQAG----- 132
+ELPY +LN LP DI+V+AW P P + ARF C R YKY+F P G
Sbjct: 300 DELPYANILNAILPPDIRVLAWCPDPPPNFDARFSCRQRRYKYFFTNPAFCPTPGPRGLR 359
Query: 133 -------------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
LDI+ M +AA+ L G HDFRNLCK++ + + R +T+A
Sbjct: 360 STSAVAEGDEKQSQIREGWLDIEKMREAAKKLEGLHDFRNLCKIDPSKQMPSCERRITYA 419
Query: 174 ---------------------GVTSAWQNVQFNDSHHNICE------------------- 193
G +S+ + N + N+
Sbjct: 420 DIVEWEDTGKMFSSHPALNQTGASSSGLDSASNSNGLNVAALLGKGDAYSSSPSPTVAGV 479
Query: 194 ----------FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
F + FLWHQ+RC++++LFLVGQG E+P I+ L+D+EK P +P+Y M
Sbjct: 480 GGASGPKVYAFCVHGSAFLWHQVRCMVAILFLVGQGLEQPSIVDDLLDVEKTPTRPMYEM 539
Query: 244 VRGEPLNLYHTEFDNLT 260
PL L+ F + T
Sbjct: 540 ADDAPLVLWDCIFPDNT 556
>gi|57640862|ref|YP_183340.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
gi|62901178|sp|Q5JI92.1|TRUA_PYRKO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|57159186|dbj|BAD85116.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
Length = 267
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 28/290 (9%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL++ Y G ++GFQ Q T+ ++K LQK +IE EK+ F RTD GVSAF
Sbjct: 3 LALRVAYDGSAFYGFQRQPGV-RTVEGEIIKVLQKLGIIESPEKNDFKGASRTDRGVSAF 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV+ P E D L ++LN++L D+ V+ + VP+ + RF F+
Sbjct: 62 FNVVSF-------VPSERPD---LARPEVLNHHL-SDVWVLGIAEVPDDFHPRFWAKFKT 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ G D+ AM + A VG HDF K+ G + R V V
Sbjct: 111 YRYYLVNEGFDLSAMRECASLFVGRHDFSAFAKLEPGRDPI---REVERVEVI------- 160
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
++ + FLW +R I++ L G G + E +++++ E + P P
Sbjct: 161 ---ERQGYLVIEVQGKSFLWEMVRRIVNALRFCGLGLLEAEEVERMLSGEYGKKIPPAPP 217
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
E L L+H E+ + + DE + RD+ E +S +A + G+ +
Sbjct: 218 ---EGLVLWHIEYPGIGFEGDEKGIKKARRDIFERYSRALTRAALFGDFL 264
>gi|399215855|emb|CCF72543.1| unnamed protein product [Babesia microti strain RI]
Length = 270
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 119/262 (45%), Gaps = 25/262 (9%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I ++ Y G NYHG Q D T+ HL+ AL K+ LI D + C RTD GV A
Sbjct: 14 ILVRYSYIGTNYHGSAYQKGVD-TVESHLINALTKSGLIVDIYNCDYCKCSRTDKGVHAR 72
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNN-----LPRDIKVVAWSPVPEKYSARFD 118
++L N +P L ++N N LP DI + PV +S R+D
Sbjct: 73 ANYISLFAL------------NNIPKLHLMNINRLNKYLPNDICITKIFPVHSTFSCRYD 120
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
C R YKY+F L I M +AAQ +G HDF+ K N G + +
Sbjct: 121 CKGRIYKYFFNSTNLKICEMAEAAQLFIGEHDFKLFSKRNRGLTKSTMYGNTNCSKEITE 180
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+Q F H I+++ FLWHQ+RC+M L ++G G +QQL D+ K
Sbjct: 181 FQIAAFASGLH---VATIKARSFLWHQVRCMMGALIMIGSGQLT---MQQLSDMLKLKSN 234
Query: 239 -PVYPMVRGEPLNLYHTEFDNL 259
Y M + L LY FDN+
Sbjct: 235 VKCYLMAPADGLLLYDCLFDNI 256
>gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
Length = 283
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 30/241 (12%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
I +QG + + TI + KAL + LI+D + CGRTD GV + +
Sbjct: 2 IFFQGIAFQ----KDDKIPTIEGEIYKALLQLRLIKDIDSCDLVRCGRTDRGVHSAGNYI 57
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
++ +R++ + Y++MLN LP DI+V+ + V +SARFDC +R YKY+
Sbjct: 58 SVNLRTR------AKNLEPYNYMEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKYF 111
Query: 128 FPQ-------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAG 174
FP + M+ AA+ +GTHD+R CKM++ N R+ T+
Sbjct: 112 FPLNHERTKISKFPKIPPEQVPLMNVAAKQFLGTHDYRRFCKMDLKN-----RKNQTYIR 166
Query: 175 VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII-QQLVDIE 233
+ ++ F D + I+ FLWHQ+R +M +LF +GQ PE+I Q L D+E
Sbjct: 167 TIYEF-DINFVDENRTFAVATIKGSAFLWHQVRLMMGILFEIGQQKFNPEVITQMLTDVE 225
Query: 234 K 234
+
Sbjct: 226 Q 226
>gi|19074961|ref|NP_586467.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
gi|19069686|emb|CAD26071.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
Length = 339
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 124/249 (49%), Gaps = 28/249 (11%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALKI Y G Y G Q+ + TI +L AL+ T L E GRTD+GVS
Sbjct: 59 RTIALKISYDGRRYSGVSPQSGRE-TIGGYLEYALKSTRLGE-----KLVYAGRTDAGVS 112
Query: 62 AFCQVVTLKIRSKLTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
A + + + S++ P E D E Y MLNN+LP DI+VV W+PVP+ +SAR
Sbjct: 113 AIGMIASGVLTSRIEMPNRSYAVAEDDYKEYKYDVMLNNHLPPDIRVVGWAPVPDTFSAR 172
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
F C+ R Y+Y+F + GLDID M KAA + G F K + N + R + V
Sbjct: 173 FTCIQRQYRYYFHKKGLDIDRMSKAASEIKGMSSFYCFSKHSDKN--ARYERTLDECRV- 229
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
V D ++ +IR++ FL + +R I+ + G+G +Q++ E YP
Sbjct: 230 -----VDDGDLYY----LDIRARAFLHNMVRKIVWAIKKSGRGESYD--VQRIGTSEPYP 278
Query: 237 R---KPVYP 242
VYP
Sbjct: 279 LVFCNAVYP 287
>gi|449328632|gb|AGE94909.1| tRNA pseudouridine synthase a [Encephalitozoon cuniculi]
Length = 339
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 124/249 (49%), Gaps = 28/249 (11%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALKI Y G Y G Q+ + TI +L AL+ T L E GRTD+GVS
Sbjct: 59 RTIALKISYDGRRYSGVSPQSGRE-TIGGYLEYALKSTRLGE-----KLVYAGRTDAGVS 112
Query: 62 AFCQVVTLKIRSKLTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
A + + + S++ P E D E Y MLNN+LP DI+VV W+PVP+ +SAR
Sbjct: 113 AIGMIASGVLTSRIEMPNRSYAVAEDDYKEYKYDVMLNNHLPPDIRVVGWAPVPDTFSAR 172
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
F C+ R Y+Y+F + GLDID M KAA + G F K + N + R + V
Sbjct: 173 FTCIQRQYRYYFHKKGLDIDRMSKAASEIKGMSSFYCFSKHSDKN--ARYERTLDECRV- 229
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
V D ++ +IR++ FL + +R I+ + G+G +Q++ E YP
Sbjct: 230 -----VDDGDLYY----LDIRARAFLHNMVRKIVWAIKKSGRGESYD--VQRIGTSEPYP 278
Query: 237 R---KPVYP 242
VYP
Sbjct: 279 LVFCNAVYP 287
>gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
Length = 262
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 129/267 (48%), Gaps = 41/267 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IA K+ Y G N+HGFQ Q + T+A L KA + + D +K+ F C GRTD+GV AF
Sbjct: 3 IAYKLAYVGTNFHGFQYQPNV-RTVAGELFKAFRALGI--DPKKAKFRCAGRTDAGVHAF 59
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ + + + + +M N +LP D+ AW+ V EK++ R R
Sbjct: 60 GQVIAINVEKPI-------------FPRMFNAHLPEDVTFWAWTEVDEKFNPR-HAKSRT 105
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y Y P G DI AM KA++ L+GTHDF N K G RR + NV+
Sbjct: 106 YVYVMPAEGYDISAMRKASKLLLGTHDFSNFTK-KFGER----RRCI------RTIYNVE 154
Query: 184 FN-DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK---- 238
D + E I F W+ +RCI+S L VG G+ E + +++ E++ +
Sbjct: 155 LRLDDGFVVLE--IVGNAFTWNMVRCIVSALREVGSGHRSVEWFEDMLNPERHRERIEPA 212
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYDE 265
P Y ++ L E++ + + DE
Sbjct: 213 PAYGLI------LKDVEYEGIEFEVDE 233
>gi|88603643|ref|YP_503821.1| tRNA pseudouridine synthase ACD [Methanospirillum hungatei JF-1]
gi|88189105|gb|ABD42102.1| tRNA pseudouridine synthase A [Methanospirillum hungatei JF-1]
Length = 276
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 119/260 (45%), Gaps = 32/260 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A +I Y G ++ G Q Q T+ + A + +I ++ S A GRTD GV A
Sbjct: 13 LAFRIGYIGTSFFGSQYQ-PDQRTVEGEIEAACLRAGIITSRQVSRLALSGRTDRGVHAK 71
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
CQ++ L S N ++ LN LP DI V AW+ PE + R+D + R
Sbjct: 72 CQILAL------------STHNPDLAVRALNGQLPPDIWVSAWAYAPESFYPRYDVIIRT 119
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+F + DI+AM AA +GTHDFR ++ G V + + V
Sbjct: 120 YRYYFSRPPSDINAMRDAAGLFLGTHDFRCFARIEPGKSPV---KTIDRIEVI------- 169
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE-KYPRKPVYP 242
S N C + +Q FLWH +RC+ L+ V +G + Q + E K KP P
Sbjct: 170 ---SDENGCRLEVTAQSFLWHMVRCMAGSLYQVSEGEMAIRDLTQYLKGECKNKVKPAPP 226
Query: 243 MVRGEPLNLYHTEFDNLTWH 262
E L L+ + D L WH
Sbjct: 227 ----EGLILWDVQAD-LDWH 241
>gi|240103716|ref|YP_002960025.1| tRNA pseudouridine synthase A [Thermococcus gammatolerans EJ3]
gi|259550472|sp|C5A7E9.1|TRUA_THEGJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239911270|gb|ACS34161.1| tRNA-pseudouridine synthase A (truA) [Thermococcus gammatolerans
EJ3]
Length = 267
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 134/288 (46%), Gaps = 28/288 (9%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL+I Y G ++GFQ Q T+ L+ L K +IE EK+ F RTD GVSAF
Sbjct: 3 LALRIAYDGTAFYGFQRQPGI-RTVEGELINVLTKLKIIESPEKNDFKGASRTDRGVSAF 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV+ PGE +D L ++LN+NL D+ V+ + VP+ + RF + +
Sbjct: 62 FNVVSF-------VPGERAD---LARPEVLNHNL-HDLWVLGVAEVPDDFHPRFWAISKT 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ G +++ M A+ G HDF ++ G V R +TH +T
Sbjct: 111 YRYYLIDEGFELEKMVGCAKLFEGRHDFSAFARLEPGRDPV---REITHISIT------- 160
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
H I + FLW +R I++ L G +PE + ++ + P P
Sbjct: 161 ---PRHGYYVIEITGKSFLWEMVRRIVNALRFCGLSLLEPEEVGAMLSGVYEKKVPPAP- 216
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGE 291
E L L+H E+ N+ + D +S RDL E +S +A + G+
Sbjct: 217 --PENLILWHIEYPNVEFKTDGKSLSKARRDLFERYSRALARAALFGD 262
>gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
Length = 277
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 138/299 (46%), Gaps = 34/299 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALK+ Y G YHG Q+Q TI L K+L+ +I+D + ++F GRTD+GV +
Sbjct: 5 MALKLAYIGTEYHGSQVQPELP-TIEGELFKSLKNLEIIDDPKSANFVSSGRTDTGVHSL 63
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVVT ++D+ L +++N+ LP I A++ VP++++ R R
Sbjct: 64 GQVVTF-----------DTDNPRLAVPRVINSQLPESIWAWAYAVVPDEFNPRHGAFSRR 112
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y Y DI + A++YL+GTHDF N C G V + + N++
Sbjct: 113 YLYIMSGEEYDISRIRTASKYLIGTHDFANFCTPVKGKSTVRTVQRI----------NIR 162
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR----KP 239
+ + +I++ FLW +R I++ L +VG G E ++Q+++ E Y P
Sbjct: 163 VKGT---LTLIDIQADSFLWKMVRKIVTALMMVGYGTRDTEWLEQMLNPEYYEEGIEPAP 219
Query: 240 VYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVR 298
Y ++ + L E W D+ + LH+ + A +L ++ R
Sbjct: 220 SYGLILKDVDYLQPIE-----WEVDDYSIQKARNQLHQHLIRYRVMAEVLEHLVPQEKR 273
>gi|403168693|ref|XP_003328281.2| hypothetical protein PGTG_09575 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167621|gb|EFP83862.2| hypothetical protein PGTG_09575 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 593
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 145/323 (44%), Gaps = 91/323 (28%)
Query: 2 RPIALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIE---------------- 43
R IAL I YQG + G +Q + +T+ L +AL L+E
Sbjct: 105 RKIALMISYQGELHGGLAWQPDVTRLSTVEGELFRALLVARLVEGAGEFEEQEEEDSERW 164
Query: 44 ----DKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLTS--------PGEESDDN----EL 87
D K ++ GRTD+GVS QVV+L +RS+L S P +++D + E
Sbjct: 165 RGLVDLNKWGYSRAGRTDAGVSGAGQVVSLWVRSQLRSVPAPFGFLPPKKTDSDDGSEEE 224
Query: 88 P---------------------YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY 126
P Y ++N+ LP ++V+AWSPV + ARF C R+YKY
Sbjct: 225 PRGESAGPKQEQEQEEAEEELQYHTIINSILPNSVRVLAWSPVHHDFDARFSCQARHYKY 284
Query: 127 WF-----PQA-GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV----- 175
+F PQA GLDI+AM++AA L+G HDFRN CK++ + +FRR + A +
Sbjct: 285 FFSLYESPQAPGLDIEAMNRAADRLIGEHDFRNFCKIDPSKQLAHFRRKILSAEIKPVLD 344
Query: 176 -------------TSAWQNVQFNDSHHNICE------------FNIRSQGFLWHQIRCIM 210
S H I ++ FL++ +R I+
Sbjct: 345 PHHHHLLLLQQQQLSGPSGSSEKHPHPQIYPDALAPETNPLFVLDLVGTAFLYNMVRHIV 404
Query: 211 SVLFLVGQGNEKPEIIQQLVDIE 233
SVLFL+G G E+ +I +L+ E
Sbjct: 405 SVLFLIGSGKEEISVIDRLLYTE 427
>gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
Length = 273
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 30/235 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR IALK+ Y G NYHGFQ Q T+ LL AL++ +I S F GRTD GV
Sbjct: 1 MRKIALKVAYIGTNYHGFQRQPDV-PTVEGKLLDALKEAGVIRSPGDSRFQIAGRTDRGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V+ ++ ++ +N+ LP DIKV+AW+ V + R+ L
Sbjct: 60 HALGNFVSFFTEEEI-------------HVNQINDLLPHDIKVLAWASVMYPFKVRY-PL 105
Query: 121 FRNYKYWFPQA-GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW 179
R+Y+Y + +DIDAM KAA++ GTHDF N + N +
Sbjct: 106 ERHYRYILHRGESMDIDAMAKAAEHFRGTHDFSNFSRRRDRNPIRKI------------- 152
Query: 180 QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+V+ ++ ++I ++ + FLW +R ++ VL LV +G P+ + +L+D ++
Sbjct: 153 NDVRVSEDDNSIL-VDVYGESFLWQMVRKMVRVLLLVSEGELSPDDVPRLLDTDE 206
>gi|401403432|ref|XP_003881470.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool]
gi|325115883|emb|CBZ51437.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool]
Length = 475
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 104/216 (48%), Gaps = 38/216 (17%)
Query: 6 LKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
LK+ Y G Y G +Q + S+ T+ L AL+KTCLI D+ A
Sbjct: 91 LKLAYDGSAYSGIAYQGENSAVRTVEGALFDALEKTCLIRDRNAWQPA------------ 138
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
K P E D Y +LN LP DI++VA +PVP + ARFDC R
Sbjct: 139 ----------KRLFPEENYD-----YAAVLNAVLPGDIRIVASAPVPPGFDARFDCTGRV 183
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
YKY+F GLD+ MH+AAQ VG H+FR CK++ N RR +T +
Sbjct: 184 YKYFFHSEGLDLPRMHRAAQRFVGEHNFRYFCKLDP-RQYRNPRRTLTSFAIEP------ 236
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
DS + RS FLWHQ+R +M+ L VG+G
Sbjct: 237 VGDSACAVATIAGRS--FLWHQVRFMMAALLKVGRG 270
>gi|288560959|ref|YP_003424445.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
gi|288543669|gb|ADC47553.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
Length = 290
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 24/299 (8%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ ALKI Y G ++HGFQ Q T+ L+ L+K I+D + S F GRTD+GV
Sbjct: 1 MKRTALKIAYIGTHFHGFQRQPDV-RTVEEELIYHLRKLEYIDDLKASRFRIAGRTDAGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+ V++ + ++ + +NN+LP DI+++AW+PV + RF
Sbjct: 60 HSLGNVISFQSEKEVR-------------VNQINNSLPDDIQIIAWAPVRFGFKPRF-AK 105
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL-VTHAGVTSAW 179
R Y+Y + LDID + K A+ GTHDF N K V + +T +
Sbjct: 106 RRWYRYILFEEDLDIDLLRKTAEVFKGTHDFTNFTKRKQKTTVRTIEDIRITKPIIDEED 165
Query: 180 QNVQFNDSHHNICE----FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+N + + +H N +I + FLW+ +R +M + V G + +++L++ E+
Sbjct: 166 KNKKSDFAHLNKSYSPIFVDIYGESFLWNMVRKMMRIFLDVNYGKLTLDDVERLLNPEEG 225
Query: 236 PRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVS----HVLRDLHEDWSLLSIKATMLG 290
+ +V E L L E++ + + YD+ +++ +L E SI +ML
Sbjct: 226 EPRAYIKVVDAENLILMDIEYEGIRFRYDDYACERFRRYLIDNLFELQKTYSITESMLN 284
>gi|336476042|ref|YP_004615183.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
gi|335929423|gb|AEH59964.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
Length = 271
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 31/235 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IALK+ Y G +YHG Q+Q D T+ L +AL+ +I D +++A GRTD+ V A
Sbjct: 3 IALKLAYIGSDYHGSQVQPDVD-TVEGQLFRALENLGIISDPHSANYASAGRTDASVHAA 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYL---KMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV D E P L +++N+ LP I A + VP+ + R +
Sbjct: 62 GQVVAF--------------DTEAPNLAIPRVINSKLPESIWAWAHAEVPDDFDPRRNAK 107
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R+Y+Y +DI + A++Y GTHDF N C +G N R V + +
Sbjct: 108 TRSYRYIMSGENIDISKIRAASRYFTGTHDFLNFC---TNDGDRNTVRTVNRIDIRIS-- 162
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ + +I + GFLW+ +R I++ L +VG G E ++Q++D Y
Sbjct: 163 --------GPLVKIDIDADGFLWNMVRKIVTALRMVGSGVRDIEWVKQMLDPATY 209
>gi|212223540|ref|YP_002306776.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1]
gi|229470756|sp|B6YTJ2.1|TRUA_THEON RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212008497|gb|ACJ15879.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1]
Length = 267
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 140/292 (47%), Gaps = 32/292 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL+I Y G ++GFQ Q T+ +++AL K +IED E S+F RTD GVSAF
Sbjct: 3 LALRIAYDGTAFYGFQRQPGL-RTVEGEIIRALTKLGIIEDVESSNFKGASRTDRGVSAF 61
Query: 64 CQVVTLKIRSK--LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
VV + S+ L P ++LN +L +D+ V+ + VPE + RF
Sbjct: 62 FNVVAFDVASRPDLVRP------------EVLNFHL-KDVWVLGTAEVPEDFHPRFWAKS 108
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
+ Y+Y+ AG D AM + A+ +GTHDF ++ V R + A +
Sbjct: 109 KTYRYYLIDAGFDEKAMRECAKLFIGTHDFSAFARLEPHKNPV---RELIRADII----- 160
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ I E +S FLW R I++ L G G E ++++++ E Y RK
Sbjct: 161 ---KRQGYYIIELEGKS--FLWEMARRIVNALRFCGLGILTEEEVEKMLNGE-YSRK--I 212
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
P R E L L+ E++ + + +E + DL E +S +A + G+++
Sbjct: 213 PPARPEGLVLWGIEYEGIEFRGNEKGIRKAKHDLFERYSEALTRAALFGDLL 264
>gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452210068|ref|YP_007490182.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
gi|34395892|sp|Q8PWT1.1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452099970|gb|AGF96910.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
Length = 269
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 25/232 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALK+ Y G +HG QIQ S + T+ L KAL+ +IE + +++ C GRTD+GV A
Sbjct: 3 VALKLAYIGTEFHGSQIQPSVE-TVEKELFKALRNLRIIESPKSANYICAGRTDAGVHAL 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ ++D L +++N+ LP I V A + VP + AR + R+
Sbjct: 62 GQVIAF-----------DTDRPNLAIPRIINSGLPPTIWVWAHAEVPYDFDARRHAVSRH 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y G DI M +A++ L+GTHDF N + N V + NV+
Sbjct: 111 YRYVISGEGYDISKMREASKLLLGTHDFENFSRSNGEKSTVRTLERI----------NVR 160
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ +I + ++ FLW+ +R I++ L ++G+G + + Q+++ + Y
Sbjct: 161 VDG---DITKIDVVGNSFLWNMVRKIVTALSMIGKGVRDNDWLIQMLNPDIY 209
>gi|219853269|ref|YP_002467701.1| tRNA pseudouridine synthase ACD [Methanosphaerula palustris E1-9c]
gi|254789642|sp|B8GFU5.1|TRUA_METPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219547528|gb|ACL17978.1| tRNA pseudouridine synthase A [Methanosphaerula palustris E1-9c]
Length = 280
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 27/239 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A ++ Y G + G Q+Q + T+ L+ A Q+ L +D K+ FA GRTD GV A
Sbjct: 3 LAFQLSYDGNQFRGSQLQPAY-RTVEGELITACQRVQLFDDPCKAGFALAGRTDRGVHAR 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV ++P E ++ LN L D+ ++ VP + RFD + R
Sbjct: 62 GQV------GAFSTPFPER------AVEALNGQLSPDLWCNGFAEVPPSFHPRFDAISRT 109
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+F LDI AM +AA L+GTHDF L ++ + + R V A V
Sbjct: 110 YRYFFADWPLDIRAMDQAAAALIGTHDFSRLARVREKSPI----RTVKSARV-------- 157
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
F D I F + + +LWH +RC+ + L L+G +PE++++L+ + P P
Sbjct: 158 FQD--RGIPVFEVTAHTYLWHMVRCMAAALLLIGTHEREPELMERLLSGKCRRNPPAAP 214
>gi|307352726|ref|YP_003893777.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
gi|307155959|gb|ADN35339.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
Length = 261
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 107/241 (44%), Gaps = 31/241 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IA + Y G +++G Q Q T+ + A L D + F GRTD+GV A
Sbjct: 3 IAFLVSYIGTDFYGSQ-QQPGIRTVEGEFIGACIDLGLFSDWRDARFQFSGRTDAGVHAR 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELP--YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
Q+ D + P + +N LP DI+ W+ VPE ++ RF+
Sbjct: 62 SQICAF--------------DTDYPERAVSAINRKLPGDIRCRGWAGVPEGFNPRFEVSE 107
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y+Y+FP LD M AA+YL G HDF ++ N R + A + +
Sbjct: 108 RIYRYFFPDGNLDWGKMSLAAEYLPGVHDFSRFARVEGKNP----ERKIFLAEIIPDKEG 163
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+ F IR + FLW+ +RCI L+LVG G+E PE+I + PR P
Sbjct: 164 II----------FEIRGESFLWNMVRCISHALWLVGSGSESPEVISAALSNTDGPRFPAA 213
Query: 242 P 242
P
Sbjct: 214 P 214
>gi|327401434|ref|YP_004342273.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
gi|327316942|gb|AEA47558.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
Length = 290
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 124/246 (50%), Gaps = 33/246 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALK+ Y G ++ GFQ Q + T+ L KA + + + + S++ C GRTD+GV AF
Sbjct: 27 VALKLAYIGTDFAGFQYQ-PDERTVEGELFKAFESLGI--NVKASNYKCAGRTDAGVHAF 83
Query: 64 CQVVTLKIRSKLTSPGEESDDNE-LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QVV L + SD + LP +++N NLP DI V AW+ VP+ ++ R+ R
Sbjct: 84 SQVVALDV----------SDAKKVLP--RVINANLPDDIVVWAWAKVPDDFNPRY-ATSR 130
Query: 123 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNV 182
Y Y DI AM KAA+ L+GTHDF N K G G R + NV
Sbjct: 131 TYIYVLYSREYDISAMRKAAKLLLGTHDFTNFTK-KFGEGQSCVRTI----------YNV 179
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK---- 238
+ + + F I F W+ +RCI++ L VG + E +++++ EK+ +
Sbjct: 180 ELR-VNGDFLIFEIEGNAFTWNMVRCIIAALEAVGSRHRSVEWFEEMLNPEKHRERIEPA 238
Query: 239 PVYPMV 244
P Y ++
Sbjct: 239 PAYGLI 244
>gi|387592744|gb|EIJ87768.1| hypothetical protein NEQG_01840 [Nematocida parisii ERTm3]
gi|387595370|gb|EIJ92994.1| hypothetical protein NEPG_01949 [Nematocida parisii ERTm1]
Length = 326
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 130/258 (50%), Gaps = 50/258 (19%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDK-----EKSSFA----- 51
R + LK+ Y G YHGF Q T+ HHL +L K +E + S+F
Sbjct: 6 RNVLLKLSYNGQQYHGFAYQPGLP-TVEHHLFLSLIKNKFVEINNGLPIQPSTFVWPKEI 64
Query: 52 ----------CCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDI 101
CGRTD+GVSA Q +++ + S + + + PY M+N +LP DI
Sbjct: 65 LASIALMKYYKCGRTDAGVSAAAQFISIHLPS--------NTEKDYPYDIMINQHLPNDI 116
Query: 102 KVVAWSPVPEKYSARFDCLFRNYKYWF---PQAGLDIDAMHKAAQYLVGTHDFRNLCKMN 158
+V+ W V +++SARF C+ R Y+Y+F P + L+I+ M A++ L+GTH F LCK
Sbjct: 117 RVLGWMFVDKEFSARFTCISREYEYYFSKRPASILNIETMKDASKKLLGTHWFGRLCKQE 176
Query: 159 VGNGVVNFRRLVTHAGVT----SAWQNVQFND--SHHNICE----------FNIRSQGFL 202
+ +RL ++ +A ++V+ D S +C IR++ FL
Sbjct: 177 KESS--KQKRLEKKQKLSPDEVTAEESVRTVDLISFEKVCTDEITGVEVYLMRIRARSFL 234
Query: 203 WHQIRCIMSVLFLVGQGN 220
+Q+R I S+LF+VG G+
Sbjct: 235 HNQVRKIFSLLFMVGSGS 252
>gi|91773587|ref|YP_566279.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
gi|121691685|sp|Q12VJ7.1|TRUA_METBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91712602|gb|ABE52529.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
Length = 275
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 25/232 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALKI Y G N+HG Q+Q + D T+ L K L++ ++ED ++F GRTDSGV A
Sbjct: 3 VALKIAYIGSNFHGSQVQLN-DPTVEGELFKVLKELGIMEDPRTANFISSGRTDSGVHAM 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++D L +++N+ LP I A + VPE + R L R+
Sbjct: 62 GQVVAF-----------DTDAPNLAMPRVINSKLPGTIWAWAHAIVPENFDPRRHALSRS 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y DI + A++ L+G+HDF N G R+V + +
Sbjct: 111 YRYILYGEQFDISKIRSASKLLLGSHDFSNFS---TSRGSKKTVRIVKRIDIRVS----- 162
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
N+ ++ + FLW+ +R I++ L +VG G E + ++D E Y
Sbjct: 163 -----GNLTRIDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLDPESY 209
>gi|390960509|ref|YP_006424343.1| putative pseudouridine synthase [Thermococcus sp. CL1]
gi|390518817|gb|AFL94549.1| putative pseudouridine synthase [Thermococcus sp. CL1]
Length = 267
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 141/291 (48%), Gaps = 30/291 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL++ Y G ++GFQ Q T+ L++AL K +IE+ E++ F RTD GVSAF
Sbjct: 3 LALRVAYDGTAFYGFQRQPGV-RTVEGELIRALTKLRIIENPEENDFKGASRTDRGVSAF 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV+ PGE +D L ++LN++L RD+ V+ + VP+++ RF +
Sbjct: 62 FNVVSF-------VPGERAD---LAKPEVLNHHL-RDVWVLGVAEVPDEFHPRFWARGKT 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ G D++ M + A+ GTHDF K+ G V R ++ +T
Sbjct: 111 YRYYLVDEGFDLETMLECAKLFEGTHDFSAFAKLEPGRDPV---RTISSIVMT------- 160
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG-NEKPEIIQQLVDIEKYPRKPVYP 242
+ + E I + FLW +R I++ L G G E E+ L I Y +K P
Sbjct: 161 -QRGGYYVVE--ISGESFLWEMVRRIVNALRFCGLGLLEVGEVKSMLEGI--YTKK--IP 213
Query: 243 MVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
E L L+H ++ + + D + RDL E +S +A + G+ +
Sbjct: 214 PAPAEGLVLWHIDYPGIEFTGDGRGIKKARRDLFERYSRALTRAALFGDAL 264
>gi|396082522|gb|AFN84131.1| tRNA pseudouridine synthase A [Encephalitozoon romaleae SJ-2008]
Length = 312
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 136/292 (46%), Gaps = 35/292 (11%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G Y G Q TI +L AL+ T L E GRTDSGVS
Sbjct: 36 RTVALKISYNGEGYSGVSPQNGR-KTIGGNLEYALKATGLGE-----KLVYAGRTDSGVS 89
Query: 62 AFCQVVTLKIRSKLTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
A V + + S++ P + D E Y MLNN LP DI+V+ W+PVP+ ++AR
Sbjct: 90 AINMVASGVVISRVLEPNRSYVITKDDHKEYKYDIMLNNYLPSDIRVIGWAPVPDTFNAR 149
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
F C+ R Y+Y+F + GLDI+ M++AA + ++F K + N + R + +
Sbjct: 150 FTCIQRQYRYYFHKEGLDINEMNQAASRIKDINNFYYFSKHSDKNA--RYERKLDECRII 207
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+I +I+++ FL + +R I+ + G+G E IQ++ E YP
Sbjct: 208 ----------DDGDIYYLDIKARAFLHNMVRKIVWAVQKSGKGEEYD--IQRIGTSEPYP 255
Query: 237 R---KPVYPMVRGEPLNL-------YHTEFDNLTWHYDEIEVSHVLRDLHED 278
VYP NL Y E D + + + H+ +L ++
Sbjct: 256 LVFCGAVYPYELSFINNLRCCSELRYRMERDQINYKISRDRLEHLANELSKE 307
>gi|429962244|gb|ELA41788.1| tRNA pseudouridine synthase A [Vittaforma corneae ATCC 50505]
Length = 327
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 118/236 (50%), Gaps = 24/236 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G NY G +Q H L+ K I D CGRTD+GVS
Sbjct: 37 RKVALRLSYHGENYKG--VQHYKHLKSVHDCLQNALKVSGIGD----GIVFCGRTDAGVS 90
Query: 62 AFCQVVTLKIRSKLTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
A VV++++ S+L +P ESD E PY LN LP DI++ W+PVP+ ++AR
Sbjct: 91 AINMVVSVEVNSRLENPNRSYQIIESDHEEYPYDVALNMLLPDDIRITGWAPVPDNFNAR 150
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV------------V 164
+DC+ R+YKY+F LD+ M +A + + DF +L + + V
Sbjct: 151 YDCIQRHYKYFFALGSLDLKKMEEAVEKICQMDDFYHLSTHSNPKAIYKRKISEIKIHKV 210
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ + + G+T+ F+ ++ +I++ GFL + +R I V+ G+GN
Sbjct: 211 SMQTSLVKMGLTNNAGGNSFS-LDDDLYSLDIKAGGFLHNMVRKIFWVVQRCGKGN 265
>gi|34782865|gb|AAH13427.2| PUS3 protein, partial [Homo sapiens]
Length = 253
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Query: 158 NVGNGVVNFRRLVTHAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFL 215
+V NGV+NF+R + A V Q+ +C+F + Q FL+HQ+RC+M++LFL
Sbjct: 1 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 60
Query: 216 VGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDL 275
+GQG EKPEII +L++IEK P+KP Y M PL LY +F+N+ W YD+ + L
Sbjct: 61 IGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHL 120
Query: 276 HEDWSLLSIKATMLGEMIK--DTV 297
+ W+ ++K ML M++ DTV
Sbjct: 121 QQLWANHAVKTHMLYSMLQGLDTV 144
>gi|27262396|gb|AAN87479.1| tRNA pseudouridine synthase A [Heliobacillus mobilis]
Length = 249
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 113/241 (46%), Gaps = 46/241 (19%)
Query: 10 YQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
Y G +YHGFQ Q N TI L++A+Q + E+ C GRTD+GV A QVV
Sbjct: 3 YDGTSYHGFQTQEDPTNLPTIQDELMRAIQ----VLTGEEVKITCAGRTDAGVHARGQVV 58
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
S++ D + P +N+ LP+DI VV V E + +RF L ++Y+Y
Sbjct: 59 DFLTTSRI-------PDEKFPL--AMNSLLPKDIAVVKAETVAEDFHSRFGALGKHYRYS 109
Query: 127 -----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
+P L + AM +AA Y VGTHDFR C G+ V +F R
Sbjct: 110 IYNHRIHSPFHHRYSYQVYPP--LHVAAMQEAAGYFVGTHDFRGFCA--TGSPVKDFVRT 165
Query: 170 VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
+ H +T +N+ D + GFL++ +R I L VG+G PE I Q+
Sbjct: 166 IWHCTLTVTEENLLLMD---------VMGDGFLYNMVRIITGTLVDVGKGKIAPESIPQI 216
Query: 230 V 230
+
Sbjct: 217 I 217
>gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
Length = 273
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 27/241 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALKI Y G +Y G Q+Q +TI + +ALQ +IED + F GRTD+GV A
Sbjct: 3 VALKIAYIGSSYRGSQVQPGV-STIEGKIFEALQSLEIIEDPSSARFVSSGRTDTGVHAM 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++D +L +++N+ LP DI + + V + R + R
Sbjct: 62 GQVVAF-----------DTDKPKLAIPRVINSKLPGDIWAWSRAEVDSDFHPRRYAINRT 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y P DI + A L G+HDF N C + G + R + V A
Sbjct: 111 YRYITPSMDADISKLRAACSILEGSHDFANFCFRDTGRSTI---RRIEKIDVRLA----- 162
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR--KPVY 241
N+ +I + FLW IR I++VL LVG G + ++ ++D Y KP
Sbjct: 163 -----GNLLRIDITANSFLWKMIRKIVTVLLLVGSGARDLDWLENMLDPASYEEGIKPAK 217
Query: 242 P 242
P
Sbjct: 218 P 218
>gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915162|sp|O26928.1|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 30/235 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR IALK+ Y G NYHGFQ Q T+ LL+AL+ +IED +++ F GRTD GV
Sbjct: 1 MRKIALKVAYIGTNYHGFQRQPDV-PTVEGKLLEALEGAGIIEDPKRARFQIAGRTDRGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V+ + ++ +N+ LPRDI+V+AW+ V + R+ L
Sbjct: 60 HALGNFVSFFTEEDI-------------HVNQINDLLPRDIRVLAWASVMYPFKVRY-PL 105
Query: 121 FRNYKYWF-PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAW 179
R+Y+Y + +D +M +AA + GTHDF N + + + V RR+
Sbjct: 106 ERHYRYILHREESMDTYSMAEAAAHFRGTHDFSNFSRRSDRDPV---RRI---------- 152
Query: 180 QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+V+ ++ +I ++ + FLW +R ++ L +V +G P+ + L+D ++
Sbjct: 153 NDVRISEVGDSII-IDVYGESFLWQMVRKMVRALLMVSEGELAPDDMAGLLDTDR 206
>gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro]
gi|121729516|sp|Q46CU8.1|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro]
Length = 269
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 29/234 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALK+ Y G +HG QIQ + + T+ L KAL+ +IE + +++ C GRTD+GV A
Sbjct: 3 VALKLAYIGTEFHGSQIQPNVE-TVEGELFKALRNLGIIESPKSANYTCAGRTDAGVHAL 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++D L +++N+ L I V A + VP + AR D + R+
Sbjct: 62 EQVVAF-----------DTDKLNLAIPRVINSELTPGIWVWAHAEVPLSFDARRDAVSRH 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y DI + +A+++L+GTHDF N + N G S + ++
Sbjct: 111 YRYVMSGKEYDISKIREASKFLLGTHDFENFSRTN---------------GEKSTVRTIE 155
Query: 184 FNDSHHN--ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
D+ + + + ++ FLW+ +R I++ L ++G+G + + Q+++ E Y
Sbjct: 156 RIDARIDGELIKIDVVGNSFLWNMVRKIVTALSMIGKGVRDTDWLLQMLNPEIY 209
>gi|378754991|gb|EHY65019.1| hypothetical protein NERG_02075 [Nematocida sp. 1 ERTm2]
Length = 326
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 45/256 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEK----SSFA------ 51
R + LK+ Y G NYHGF Q T+ HHL + K I+ +EK S+F
Sbjct: 6 RNVLLKLSYNGQNYHGFAYQPGLP-TVEHHLFLSFVKAKFIQAEEKQVRPSTFVWPKEIL 64
Query: 52 ---------CCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIK 102
CGRTD+GVSA Q V+L L +P E PY +LN +LP DI+
Sbjct: 65 SGIAERKYYKCGRTDAGVSAASQFVSLF----LPAPA----GKEYPYDLILNQHLPEDIR 116
Query: 103 VVAWSPVPEKYSARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCKM-- 157
V+ W V +++SARF C+ R Y+Y+F + + L I+ M +Q L+GTH F LCK
Sbjct: 117 VLGWMFVDDQFSARFSCISREYEYYFSRRAGSSLSIEKMADESQKLLGTHWFGRLCKQEK 176
Query: 158 NVGNGVVNFRRLVTHAGVTSAWQNVQFNDS--HHNICE----------FNIRSQGFLWHQ 205
++ A + V+ DS + E IR++ FL +Q
Sbjct: 177 EASKKKRLEKKQKVSPDEACAEEAVRTVDSIVFEKVSEDSVTGVEVYLMRIRAKSFLHNQ 236
Query: 206 IRCIMSVLFLVGQGNE 221
+R I SVL ++G G++
Sbjct: 237 VRKIFSVLHMLGTGSD 252
>gi|340507598|gb|EGR33533.1| tRNA pseudouridine synthase a family protein, putative
[Ichthyophthirius multifiliis]
Length = 133
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 133 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNIC 192
+++D + +AA+ +G HDFRNLCK++V NF R + + VQ+ DS
Sbjct: 1 MNVDKIKEAAKLFIGEHDFRNLCKIDVLQ-TTNFIRTIHFINIDEINPGVQYQDSRMKQY 59
Query: 193 EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
I FLWHQIR IM+VLFL+G+G E I+ L+DI+KY RKP Y M PL LY
Sbjct: 60 VATISGNAFLWHQIRNIMAVLFLIGKGQEDTSIVTDLLDIQKYSRKPNYEMASEFPLVLY 119
Query: 253 HTEFDNLTWHYDE 265
++D L + Y++
Sbjct: 120 DCQYDQLDFQYEK 132
>gi|341581737|ref|YP_004762229.1| tRNA pseudouridine synthase A [Thermococcus sp. 4557]
gi|340809395|gb|AEK72552.1| tRNA pseudouridine synthase A [Thermococcus sp. 4557]
Length = 267
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 28/290 (9%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
AL+I Y G ++GFQ Q T+ L++AL K +I D E S+F RTD GVSA
Sbjct: 3 FALRIAYDGTAFYGFQRQPDV-RTVEGELIRALSKLGIIRDAESSNFKGASRTDRGVSAI 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV + S+ +L ++LN++L RD+ V+ + VP+ + RF +
Sbjct: 62 FNVVAFDVASR----------PDLVRAEVLNHHL-RDLWVLGVAEVPDDFHPRFQARSKT 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ G + M + A VG HDF ++ G + R L+ +V
Sbjct: 111 YRYYLVDEGFNERDMRECAALFVGEHDFSAFSRLEPGRDPI--RELLR--------VDVI 160
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
++ I I + FLW R I++ + L G G + ++ +++ E + P P
Sbjct: 161 RRQGYYII---EIEGKSFLWEMARRIVNAVRLCGLGLMESREVEGMLEGEYNKKVPPAP- 216
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
E L L+H E+ ++ + DE + RDL E +S +A + G+ +
Sbjct: 217 --PEGLILWHMEYPDVKFQADERGIKKAKRDLFERYSRALTRAALFGDAL 264
>gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A]
gi|30913395|sp|Q8TU65.1|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A]
Length = 269
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 38/296 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALK+ Y G +HG QIQ + + T+ L KAL+ +IE + + + C GRTD+GV A
Sbjct: 3 VALKLAYIGTEFHGSQIQPNVE-TVEKELFKALRNLSIIESPKSADYTCAGRTDAGVHAL 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYL---KMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV D E P L +++N+ LP I A + VP + AR +
Sbjct: 62 GQVVAF--------------DTEKPNLAIPRVINSELPPAIWAWAHAEVPYYFDARRSAV 107
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R+Y Y DI M +A++ L+GTHDF N + N V +
Sbjct: 108 SRHYHYVMSGEDYDISKMREASKLLLGTHDFENFSRSNGEKSTVRTLERI---------- 157
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR--K 238
NV+ + I + ++ FLW+ +R I++ L ++G G + + Q+++ E Y +
Sbjct: 158 NVRVDGE---ITKIDVVGNSFLWNMVRKIVTALSMIGNGVRDNDWLLQMLNPEIYEEGIE 214
Query: 239 PVYPMVRGEPLNLYHTEF-DNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
P P L L + +N+ W D+ + H+ + A +L E+I
Sbjct: 215 PAPPY----GLTLMGVNYGENIEWIEDDYSIRRAGEQNHKRILRHRVMAEVLEELI 266
>gi|401828224|ref|XP_003888404.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
gi|392999676|gb|AFM99423.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
Length = 314
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 121/248 (48%), Gaps = 31/248 (12%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G Y G Q + TI +L AL+ T L E GRTD+GVS
Sbjct: 36 RTVALKISYDGQGYSGLSPQNGKE-TIGGNLEYALKATGLGE-----KLVYAGRTDAGVS 89
Query: 62 AFCQVVTLKIRSKLTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
A + + + S++ P E D E Y MLNN+LP DI+V+ W+PVP+ ++AR
Sbjct: 90 AINMIASCVVISRVLEPNRSYSITEDDYREYKYDIMLNNHLPSDIRVIGWAPVPDTFNAR 149
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
F C+ R Y+Y+F + GL+I+ M++AA + +F K + N + R + V
Sbjct: 150 FTCVQRQYRYYFHKEGLNINEMNEAASRIKRMENFYYFSKHSDEN--ARYERRLDECRVV 207
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+I +IR++ FL + +R I+ + G+G + DI++
Sbjct: 208 DDG----------DIYYLDIRARAFLHNMVRKIVWAIQKSGRG--------EAYDIQRIG 249
Query: 237 RKPVYPMV 244
+P+V
Sbjct: 250 TSEPHPLV 257
>gi|448474280|ref|ZP_21602139.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
gi|445817587|gb|EMA67456.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
Length = 288
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 36/266 (13%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSS------FACCGRTDS 58
A ++ Y G Y GFQ Q + T+ LL+AL K +++ E + +A GRTD+
Sbjct: 3 AFRVAYDGREYAGFQRQPHA-RTVEGTLLRALAKHGILDRGEGPTHATPPGYAAAGRTDA 61
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
GVSA Q V + LT + N LP I+V A + V E + A D
Sbjct: 62 GVSALAQTVAFEAPPWLTP-------------RAFNGQLPGSIRVWAAADVREGFHATHD 108
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
+ R Y+Y +D D + A L G HDF NL G V N T AG
Sbjct: 109 AVERTYRYHLYAPAIDDDRVRDALTRLSGEHDFHNLTSDETGT-VRNLTATATRAG---- 163
Query: 179 WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
++ + + GF +R ++S + VG+G +P I +L+ E P +
Sbjct: 164 -----------DLLVIELSAGGFPRALVRRVVSAVRAVGRGTTEPARIDRLLAAEPVPGE 212
Query: 239 PVYPMVRGEPLNLYHTEFDNLTWHYD 264
P EPL L++ +D +T+ D
Sbjct: 213 LGVPPAPAEPLVLWNAAYDGVTFETD 238
>gi|303391559|ref|XP_003074009.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC
50506]
gi|303303158|gb|ADM12649.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC
50506]
Length = 317
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 23/223 (10%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G Y G Q S T+ HL AL+ T L E GRTD+GVS
Sbjct: 35 RTVALRISYDGRRYSGMAPQ-SGKETVGGHLENALKFTGLGE-----KLVYAGRTDAGVS 88
Query: 62 AFCQVVTLKIRSKLTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
A VV+ S++ P ESD E Y +LN++LP DI+V+ W+PVP+ +SAR
Sbjct: 89 AISMVVSGVFISRIEMPNRSYVVTESDYKEYKYDMILNSHLPSDIRVIGWAPVPDTFSAR 148
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
F C+ R Y+Y+F + LD D M + A + +F K + N + R + +
Sbjct: 149 FTCIQRQYRYYFHKEDLDADRMREMASRIKKMENFYYFSKHSDKNA--RYERKLDECRI- 205
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
V D ++ +IR++ FL + +R I+ + G+G
Sbjct: 206 -----VDEGDVYY----LDIRARAFLHNMVRKIVWAIQKAGKG 239
>gi|315230173|ref|YP_004070609.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
gi|315183201|gb|ADT83386.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
Length = 266
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 31/287 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IALKI Y G ++GFQ Q T+ +++ LQK +IE E ++F RTD GVSA
Sbjct: 3 IALKIAYDGSKFYGFQRQPGL-RTVEGEIIRVLQKLDVIESPENANFKGASRTDRGVSAL 61
Query: 64 CQVVTLKIRS-KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
V+ + KL P ++LN++L RDI V+ + V + + RF +
Sbjct: 62 GNVIAFNTENPKLAQP------------RVLNHHL-RDIWVLGVAQVSDDFHPRFWAKSK 108
Query: 123 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNV 182
Y+Y+ G D++AM + A+ VGTHDF ++ + R V +
Sbjct: 109 IYRYYLVDEGFDVNAMKECARLFVGTHDFSAFARVEKFKDPI---REVNRLEIIP----- 160
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
++ I + FLW +R I++ L L G G + E I+++++ + P P
Sbjct: 161 -----RGDLIIIEIEGKSFLWEMVRRIVTALKLCGFGIVETEDIRKMLEGRTDKKLPPSP 215
Query: 243 MVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
E L L+ +++N+ + DE + + ++ E +S +KA M
Sbjct: 216 ---PENLVLWEIKYENIIFQIDEYSLRKIKQEFFERFSSFLVKAGMF 259
>gi|156088547|ref|XP_001611680.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
gi|154798934|gb|EDO08112.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
Length = 248
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ + Y G YHG Q+ NT+ HL +AL + D + + CGRTD V A
Sbjct: 13 LLMDFSYIGTGYHGLAYQSDEPNTVEGHLFRALSLANVASDVLNNGYERCGRTDRDVHAL 72
Query: 64 CQVVTL-KIRSKLTSPGEESDDNEL---------PYLKMLNNNLPRDIKVVAWSPVPEKY 113
+ SP +E + K +N +LPR I+V VP+ +
Sbjct: 73 HNYASFFPDPCPPNSPCSTVSPDERGVGPCYRINTFTKAINKHLPRGIRVNWVKHVPDDF 132
Query: 114 SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
S+R +C FR YKY+F +D+ + A ++ +G H+F CK + R
Sbjct: 133 SSRRNCTFRVYKYFFQLGSMDLSLIQDACRHFLGQHNFNQFCKTDN-------RNPKDSH 185
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G +++ ++N+ +C I + FLWHQ+RC+M VLF VG+G
Sbjct: 186 GTIYSFEVERYNEL---LCVATICGRAFLWHQVRCMMGVLFKVGEG 228
>gi|224035593|gb|ACN36872.1| unknown [Zea mays]
Length = 199
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 138 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIR 197
M KAA +G HDFRN CKM+ N V N+RR +T + SA ND +C I+
Sbjct: 1 MQKAASKFIGEHDFRNFCKMDAAN-VSNYRRHITEFTI-SACDRRSNND---ELCSMTIK 55
Query: 198 SQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
FLWHQ+RC+++VLFL+GQG E P ++ L+DI K RKP Y M PL L FD
Sbjct: 56 GSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFD 115
Query: 258 NLTW 261
+
Sbjct: 116 KANF 119
>gi|375083694|ref|ZP_09730712.1| tRNA pseudouridine synthase A [Thermococcus litoralis DSM 5473]
gi|374741694|gb|EHR78114.1| tRNA pseudouridine synthase A [Thermococcus litoralis DSM 5473]
Length = 262
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 31/285 (10%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
+KI Y G ++GFQ Q + T+ +++ L K +IE+ + ++F RTD GVSAF
Sbjct: 1 MKIAYDGRRFYGFQRQPNL-RTVEAEIIRVLTKLGIIENPKDANFKGASRTDRGVSAFGN 59
Query: 66 VVTLK-IRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNY 124
VV + +LTSP ++LN++L RD+ V+ + VPE + RF + Y
Sbjct: 60 VVAFNTFKPELTSP------------RILNHHL-RDVWVLGRAQVPEDFHPRFWSKGKVY 106
Query: 125 KYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQF 184
+Y+ G DI+ M A+ VG HDF N K+ + R + V
Sbjct: 107 RYYLLNEGFDIEKMKSCAEIFVGVHDFSNFAKLEEDKNPI---RKIDRIEVL-------- 155
Query: 185 NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMV 244
+ + + FLW +R I++ L L G E ++++++ E + P P
Sbjct: 156 --QRGKVITVEVEGESFLWEMVRRIITALKLCASGALSIEEVKRMLEEEVDKKLPPAP-- 211
Query: 245 RGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
E L L+ ++D + + D V R+ E ++ I A++
Sbjct: 212 -PENLVLWEVKYDEIFFEKDPYAVEKAKREFFERFAQHLITASIF 255
>gi|148642915|ref|YP_001273428.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii ATCC
35061]
gi|226708656|sp|A5ULI2.1|TRUA_METS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148551932|gb|ABQ87060.1| tRNA pseudouridine synthase A, TruA [Methanobrevibacter smithii
ATCC 35061]
Length = 290
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 143/301 (47%), Gaps = 27/301 (8%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ ALKI Y G N+HGFQ Q T+ L+ L+K I+D +KS F GRTD+GV
Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDL-RTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+ V++ + +E NE +NN+LP DI+++A +PV + R+
Sbjct: 60 HSLGNVISFQ-------SEKEVRVNE------INNSLPDDIQILAKAPVRFGFKPRY-AE 105
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA-- 178
R Y+Y ++ LD+ +++ A+ GTH+F N K R + +T A
Sbjct: 106 MRQYRYVLFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTT----RTIDDIKITKANL 161
Query: 179 --WQNVQFNDSHHNICE--FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD-IE 233
+ +F + H + +I + FLW+ +R +M V V G E +++L++ E
Sbjct: 162 NDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEELLNPAE 221
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
PR + ++ + L L ++D + + YD+ R+L + L K + MI
Sbjct: 222 NDPRANI-KVLDPDYLILMDIKYDGVKFVYDDYACERFKRNLVDSLGDLQRKYAIRESMI 280
Query: 294 K 294
K
Sbjct: 281 K 281
>gi|261350284|ref|ZP_05975701.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374]
gi|288861068|gb|EFC93366.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374]
Length = 288
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 143/301 (47%), Gaps = 27/301 (8%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ ALKI Y G N+HGFQ Q T+ L+ L+K I+D +KS F GRTD+GV
Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDL-RTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+ V++ + +E NE +NN+LP DI+++A +PV + R+
Sbjct: 60 HSLGNVISFQ-------SEKEVRVNE------INNSLPDDIQILAKAPVRFGFKPRY-AE 105
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA-- 178
R Y+Y ++ LD+ +++ A+ GTH+F N K R + +T A
Sbjct: 106 MRQYRYVLFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTT----RTIDDIKITKANL 161
Query: 179 --WQNVQFNDSHHNICE--FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD-IE 233
+ +F + H + +I + FLW+ +R +M V V G E +++L++ E
Sbjct: 162 NDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEELLNPAE 221
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
PR + ++ + L L ++D + + YD+ R+L + L K + MI
Sbjct: 222 NDPRANI-KVLDPDYLILMDIKYDGVKFVYDDYACERFKRNLVDSLGDLQRKYAIRESMI 280
Query: 294 K 294
K
Sbjct: 281 K 281
>gi|410671117|ref|YP_006923488.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
gi|409170245|gb|AFV24120.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
Length = 273
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALKI Y G +HG QIQ + TI + +AL + +I+D ++F GRTD+GV A
Sbjct: 3 VALKIAYVGTGFHGSQIQPNV-ATIEGEIFRALTELEIIQDPRSANFTSAGRTDAGVHAR 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
V+ ++D L +++N+ LP I A + +PE + R + R
Sbjct: 62 ELVIAF-----------DTDKIHLAIPRVINSKLPTAIWAWAHAEIPEDFDPRRAAIARK 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y DI + A++ L GTHDF N C T G S + ++
Sbjct: 111 YRYIMSGEQYDISRIRSASRILAGTHDFSNFC---------------TKEGEKSTVRTIE 155
Query: 184 FND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
D + + +I++ FLW+ +R I++ L +VG G +QQ+++ E Y
Sbjct: 156 KVDIRVSGTLTKIDIQANSFLWNMVRKIVTALTMVGSGARDEAWLQQMLEPEIY 209
>gi|83409929|emb|CAI64350.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 276
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 25/232 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IALKI Y G YHG+QIQ TI L + L++ +I D + + + GRTD+GV+A
Sbjct: 3 IALKIAYIGTEYHGYQIQPDVP-TIEKELFRTLEELKIITDPKSARYIGSGRTDAGVNAL 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +D+ +L +++N+ LP I V + + VP+ + R + R
Sbjct: 62 GQVVAFN-----------TDNPKLAIPRVINSKLPPSIWVWSRAEVPDDFDPRRHAVSRE 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
YKY+ L+I + KA++ L GTHDF N ++ V R V +
Sbjct: 111 YKYFVCGECLNISLLRKASKLLRGTHDFANFATPDMDKSTV---RTVERIDIR------- 160
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ +I++ F+WH +R I++ L +VG + E +++++ +++
Sbjct: 161 ---VEGRLINLDIKADSFVWHMVRKIVTALRMVGDQTREVEWLKRMLHPDEF 209
>gi|428671151|gb|EKX72069.1| tRNA pseudouridine synthase A, putative [Babesia equi]
Length = 264
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 36/253 (14%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSA- 62
+ + Y G + HG Q D T+ L AL K +++D S + RTD GV A
Sbjct: 13 VMIDFSYVGRDLHGLAYQKDED-TVEGRLFDALDKVNMLKDLVSSRYERAARTDKGVHAL 71
Query: 63 --FCQ-------VVTLK---------IRSKLTSPGEESDDNELPYLKM------LNNNLP 98
+C V++L ++ L + + N ++ +N +LP
Sbjct: 72 HNYCSFFVDPGFVLSLPDHLHRFYEFLKPSLVKFETDEERNLFRQTRISGMTRPINKHLP 131
Query: 99 RDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN 158
+ I+V + + VP +SAR DC +R YKY+F +DI M +A QY VG H+F CK +
Sbjct: 132 KYIRVNSIAIVPPNFSARGDCTYRIYKYYFQPENMDIYLMREACQYFVGHHNFTQFCKTD 191
Query: 159 VGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
N + + + G+ ++ND H I+ FLWHQ+RC+M+VLFLVG+
Sbjct: 192 KRNP-KDPNKTIYFFGIE------KYNDLLHAAV---IKGSSFLWHQVRCMMAVLFLVGK 241
Query: 219 GNEKPEIIQQLVD 231
G I+ +++
Sbjct: 242 GTINAVEIKNMLE 254
>gi|307107300|gb|EFN55543.1| hypothetical protein CHLNCDRAFT_133992 [Chlorella variabilis]
Length = 593
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 133 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV----TSAWQNVQFNDSH 188
LD+ M +AA + +G HDFRN CK++V V NFRR V V AW
Sbjct: 286 LDVGRMQEAAAFFLGEHDFRNFCKVDVAQ-VTNFRRRVLDCRVEELPACAWGG------- 337
Query: 189 HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEP 248
+ + +IR FLWHQ+RC+ +VL +VG+G E P I+ L+D ++ PRKP Y + EP
Sbjct: 338 RRLLQLHIRGTAFLWHQVRCMAAVLLMVGRGEEPPGIVATLLDPQQVPRKPQYTLASEEP 397
Query: 249 LNLYHTEFDNLTWH 262
L LY + L +
Sbjct: 398 LLLYSCAYGGLRFQ 411
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDK---EKSSFACCGRTDS 58
R +AL++LY G Y GF Q ++ TI HL AL+ T L+ + ++ ++ GRTD
Sbjct: 79 RYVALELLYLGHAYGGFARQEHTEQTIEGHLFAALRTTRLVPAEASWQELRYSRGGRTDK 138
Query: 59 GVSAFCQVVTLKIRSKL-TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
GVSA QVV L +RS T + D EL Y +LN LP+DI+V+ W+ VP+ +SARF
Sbjct: 139 GVSALGQVVALLLRSAARTGEVQPEADVELDYPSLLNRVLPQDIRVLGWADVPDDFSARF 198
Query: 118 DCLFRNYKY 126
+R YKY
Sbjct: 199 SAQYREYKY 207
>gi|222445148|ref|ZP_03607663.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii
DSM 2375]
gi|222434713|gb|EEE41878.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2375]
Length = 288
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 25/300 (8%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ ALKI Y G N+HGFQ Q T+ L+ L+K I+D +KS F GRTD+GV
Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDL-RTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+ V++ + +E NE +NN+LP DI+++A +PV + R+
Sbjct: 60 HSLGNVISFQ-------SEKEVRVNE------INNSLPDDIQILAKAPVRFGFKPRY-AE 105
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA-- 178
R Y+Y ++ LD+ +++ A+ GTH+F N K R + +T A
Sbjct: 106 MRQYRYVLFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTT----RTIDDIKITKANL 161
Query: 179 --WQNVQFNDSHHNICE--FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
+ +F + H + +I + FLW+ +R +M V V G E +++L++ +
Sbjct: 162 NDYHKKEFPNLHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEELLNPAE 221
Query: 235 YPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
+ ++ + L L ++D + + YD+ R+L + L K + MIK
Sbjct: 222 NDLRANIKVLDPDYLILMDIKYDGVKFVYDDYACERFKRNLVDSLGDLQRKYAIRESMIK 281
>gi|432332241|ref|YP_007250384.1| pseudouridylate synthase I [Methanoregula formicicum SMSP]
gi|432138950|gb|AGB03877.1| pseudouridylate synthase I [Methanoregula formicicum SMSP]
Length = 280
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 115/254 (45%), Gaps = 34/254 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A ++ Y G + G Q+Q S + T+ + A Q+ L D + F GRTD GV A
Sbjct: 17 LAFRVSYLGSRFFGSQMQVS-ERTVEGEFVAACQRLSLFSDWRDAGFLFAGRTDRGVHAI 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV S D + +N LP D A++ V + R+D R
Sbjct: 76 GQVAAF------------STDVPERAVATINLQLPPDCWCTAYAEVSPTFHPRYDAKKRT 123
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG--VVNFRRLVTHAGVTSAWQN 181
Y+Y+F +A IDAM AA VG+H+F + +M+ N V R++ G
Sbjct: 124 YRYFFSRAPPCIDAMAHAAARFVGSHNFSSFARMDGRNPCRTVYSARVLEEGGF------ 177
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
+C + ++ FLWHQ+RC+ + L +G+G E ++I L+ E P K +
Sbjct: 178 ---------VC-LEVTAESFLWHQVRCMATALLRIGEGEEDVDLIDHLLTAE--PEKALS 225
Query: 242 PMVRGEPLNLYHTE 255
P E L L+ T+
Sbjct: 226 P-APAEGLVLWDTD 238
>gi|435850369|ref|YP_007311955.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
gi|433660999|gb|AGB48425.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
Length = 269
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 139/296 (46%), Gaps = 34/296 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALKI Y G YHG QIQ S TI L AL++ +I+D + +SF GRTD+GV A
Sbjct: 3 VALKIAYVGTGYHGSQIQ-SDVATIEGELFNALKELDIIDDPKTASFQSSGRTDAGVHAR 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +D L +++N+ LP I A + VP + R D R
Sbjct: 62 GQVVAFN-----------TDKPNLSIPRVINSKLPNSIWAWAHAEVPYDFDPRRDANSRV 110
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV-NFRRLVTHAGVTSAWQNV 182
Y+Y DI + A++ L G HDF N C + V + +R+ +V
Sbjct: 111 YRYIMSGEQYDISRIRSASKILAGEHDFSNFCSKDEDKSTVRDVKRI-----------DV 159
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
+ + + + + +I + FLW+ +R I++ L +VG ++Q+++ E Y + + P
Sbjct: 160 RVSGA---LTKIDIEANSFLWNMVRKIVTALTMVGSLIRDEAWLKQMLEPESY-EEGLEP 215
Query: 243 MVRGEPLNLYHTEFD-NLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTV 297
+ L L ++ + W YD S+ LR E ++ ++ E++++ V
Sbjct: 216 -AQSYGLTLMEVKYPMPIQWVYD----SYSLRRASEKVQEYLVRHRVMAEVMQELV 266
>gi|68072249|ref|XP_678038.1| tRNA pseudouridine synthase [Plasmodium berghei strain ANKA]
gi|56498378|emb|CAH98757.1| tRNA pseudouridine synthase, putative [Plasmodium berghei]
Length = 281
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 16/248 (6%)
Query: 17 GFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLT 76
G Q ++NT+ + L++ LQ+ LI D SF+ RTD GVSA +T+++++K
Sbjct: 1 GSAYQKDNNNTVENKLIEKLQQLDLISD-SNCSFSRVSRTDKGVSARMNALTIRLKNKY- 58
Query: 77 SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDID 136
P E YLK LN L ++I+++ VP + AR +C+ R Y Y+F +I
Sbjct: 59 -PHLSISIIEKIYLKELNKKL-KNIQIIHIQCVPNNFDARLNCIQRTYVYFFINKNYNIT 116
Query: 137 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNI 196
M++A + +G H+F N CK N +F R + + + QN + F I
Sbjct: 117 KMNEATKIFLGEHNFSNFCKKRKNN--TSFIRTIHKFEIKNIDQNFYY---------FKI 165
Query: 197 RSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ FL++QIR +++ LFLVG+ + I+ +++ K Y + L LY +F
Sbjct: 166 KGTSFLYNQIRHMVAALFLVGKNQLDGQDIKSMLENNSIKNKN-YKIADECGLLLYSFKF 224
Query: 257 DNLTWHYD 264
+ ++++
Sbjct: 225 SDFNFNFN 232
>gi|237844499|ref|XP_002371547.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49]
gi|211969211|gb|EEB04407.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49]
Length = 370
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query: 89 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGT 148
Y +LN LP DI++VA +PV + ARFDC R YKY+F GLD+ MH+AAQ VG
Sbjct: 18 YAAVLNAVLPGDIRIVASAPVSPTFDARFDCTGRVYKYFFHSEGLDLQRMHQAAQRFVGE 77
Query: 149 HDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRC 208
H+FR CK++ N RR +T V SA V I + FLWHQ+R
Sbjct: 78 HNFRYFCKLDP-RQYRNPRRTLTSFAVESAGDGV--------CAVATIAGRSFLWHQVRF 128
Query: 209 IMSVLFLVGQGN 220
+M+ L VG+G+
Sbjct: 129 MMAALLKVGRGS 140
>gi|221054442|ref|XP_002258360.1| tRNA pseudouridine synthase [Plasmodium knowlesi strain H]
gi|193808429|emb|CAQ39132.1| tRNA pseudouridine synthase, putative [Plasmodium knowlesi strain
H]
Length = 306
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 130/275 (47%), Gaps = 18/275 (6%)
Query: 10 YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTL 69
Y G ++G Q + NT+ + L+ L LI ++ F+ RTD GVSA ++ L
Sbjct: 13 YVGMGFNGSAYQKDNPNTVENRLMDCLHDMNLISGVDQP-FSRVSRTDKGVSA--RMNAL 69
Query: 70 KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP 129
IR K+ P D + Y+K +N L ++++V+ VP + AR +C+ R Y Y+F
Sbjct: 70 TIRLKIRHPHMTLQDIQRVYVKEINKKL-KNMQVIDIRSVPNFFDARLNCIHRTYLYFFI 128
Query: 130 QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHH 189
+ D + + + VG HDF N CK + FRR + V +N +
Sbjct: 129 DKNYNFDRIKQGCKLFVGEHDFSNFCKKRKNSTC--FRRTILKFEVRRMDKNFHY----- 181
Query: 190 NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPL 249
F I+ FL++QIR +++ LF VG GN + +++ +K + + + L
Sbjct: 182 ----FKIKGTSFLYNQIRHMVAALFQVGTGNLALGDLANMLNNHPSSKKN-FQIANEDGL 236
Query: 250 NLYHTEFDNLTWH--YDEIEVSHVLRDLHEDWSLL 282
LY +F++L +H D SH++ + LL
Sbjct: 237 LLYSFKFNDLNFHVNVDNRVFSHLMEKYIQSAVLL 271
>gi|378754020|gb|EHY64195.1| hypothetical protein NERG_02759, partial [Nematocida sp. 1 ERTm2]
Length = 194
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 91/177 (51%), Gaps = 31/177 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFAC--------- 52
R + LK+ Y G NYHGF Q T+ HHL + K I+ +EK +
Sbjct: 6 RNVLLKLSYNGQNYHGFAYQPGLP-TVEHHLFLSFVKAKFIQAEEKQVYPSTFVWPKEIL 64
Query: 53 ----------CGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIK 102
CGRTD+GVSA Q ++L L +P E PY +LN +LP DI+
Sbjct: 65 SGIAERKYYKCGRTDAGVSAASQFISLF----LPAPA----GKEYPYDLILNQHLPEDIR 116
Query: 103 VVAWSPVPEKYSARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCK 156
V+ W V +++SARF C+ R Y+Y+F + + L I+ M +Q L+GTH F LCK
Sbjct: 117 VLGWMFVDDQFSARFSCISREYEYYFSKRAGSSLSIEKMADESQNLLGTHWFGRLCK 173
>gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091]
gi|121725515|sp|Q2NHB4.1|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091]
Length = 274
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 139/295 (47%), Gaps = 52/295 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR +ALKI Y G N+HG+Q Q + T+ LL+ ++T +IED + ++ GRTD GV
Sbjct: 1 MRRVALKIAYIGSNFHGYQRQPNY-RTVEGELLRVFKETNIIEDTWTAHYSVAGRTDKGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+ V++ +E ++ LN LP DIK++ + VP + RF L
Sbjct: 60 HSTGNVISFIT-------------DEDIHINQLNGLLPDDIKIIGEARVPYGFKVRF-PL 105
Query: 121 FRNYKYW-----FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
R Y Y F + LDI MH A + +G H+FRN K N N R+++
Sbjct: 106 TRTYTYIQPISPFEKKNLDITKMHVAMESFIGKHNFRNFSKRNEKNPN---RKIID---- 158
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG-------NE--KPEII 226
N++ ++ ++ F I + FLW+ +R +++ + VG G NE KP+ +
Sbjct: 159 ----VNLEVDE---DVLIFTIVGESFLWNMVRKMVTSIMEVGYGKLDINDINELLKPKEL 211
Query: 227 QQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSL 281
+Q + ++ P L L E+ N+ + E + ++ L +++ L
Sbjct: 212 RQFIRLQPAP---------ANGLILSDMEYKNIKFKDSEYAKNKLVEFLKKEYML 257
>gi|242398608|ref|YP_002994032.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
gi|259550478|sp|C6A238.1|TRUA_THESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|242265001|gb|ACS89683.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
Length = 266
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 129/289 (44%), Gaps = 35/289 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IALKI Y G ++GFQ Q T+ L+K L+K +IED ++++F RTD GVSA
Sbjct: 3 IALKIAYDGTKFYGFQRQPDL-RTVEGELIKVLKKLGIIEDVKEANFKGASRTDRGVSAL 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
V+ + EL ++LN++L RDI ++ + VPE + RF +
Sbjct: 62 GNVIAFN-----------TAKPELAEARILNHHL-RDIWILGKAEVPEDFHPRFWAKNKI 109
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ G+D+ + A+ +G HDF N ++ FR+ V +
Sbjct: 110 YRYYLFDEGIDVIKLKACAEAFLGRHDFSNFARLE------EFRKPVREINRIDVF---- 159
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV--- 240
S I I + FLW R I++ L L G G + + D+E ++ V
Sbjct: 160 ---SRGRIIVVEIEGKSFLWEMTRRIITALKLCGLG------VLSIGDVELMLKEKVDKK 210
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATML 289
P E L L+ ++ + + D + V R+ E + K+ +L
Sbjct: 211 LPPAPPENLVLWEVGYEGIKFEVDAYAIEKVKREFLERFRKYLTKSAIL 259
>gi|154149764|ref|YP_001403382.1| tRNA pseudouridine synthase ACD [Methanoregula boonei 6A8]
gi|153998316|gb|ABS54739.1| tRNA pseudouridine synthase A [Methanoregula boonei 6A8]
Length = 276
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 31/258 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A ++ Y G ++G Q Q SS T+ ++A ++ L D + FA GRTD GV A
Sbjct: 17 LACRVSYLGTRFYGSQQQESS-RTVEGEFIEACRRLALFSDWRTAGFASAGRTDRGVHAC 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ ++ + + LN+ LP DI A + VP+ + R+D R
Sbjct: 76 GQVIAFSTQTPDRA------------RQALNSQLPPDIWCTATAVVPDHFHPRYDARSRT 123
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+F + D AM AA+ G H+F N ++ N +R+++ ++
Sbjct: 124 YRYYFGEPPRDPVAMETAAREFSGDHNFTNFARVGDKN---PWRKIL----------EIR 170
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ + +++Q FLWHQ+RC+ + G G + + I+ L++ + +P+ P
Sbjct: 171 IG-TEGSFTYLEVKAQSFLWHQVRCMAAAALSAGMGEQDADGIRLLLN--EAASRPIQP- 226
Query: 244 VRGEPLNLYHTEFDNLTW 261
E L L+ T+ LTW
Sbjct: 227 APAEGLVLWDTDC-GLTW 243
>gi|409095808|ref|ZP_11215832.1| tRNA pseudouridine synthase A [Thermococcus zilligii AN1]
Length = 269
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 132/293 (45%), Gaps = 27/293 (9%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +AL+I Y G ++GFQ Q T+ +++ LQK +I D S F RTDSGV
Sbjct: 1 MGKLALRIAYDGTAFYGFQRQPGV-RTVEDEVIRVLQKLGIIRDPVTSEFKGASRTDSGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
SAF VV+ P E P ++LN++L +D+ VV S VP ++ RF
Sbjct: 60 SAFFNVVSF-------VPVPEKAHLATP--RVLNHHL-KDVWVVGVSEVPAEFHPRFWAK 109
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
+ Y+Y+ G D M K A+ +GTHDF + G V R +
Sbjct: 110 EKTYRYYLIDMGHDFGEMVKCARSFIGTHDFSAFARPEPGRDPVREVRSIE--------- 160
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
+ I E + + FLW +R I++ + G G E +++++ E + P
Sbjct: 161 --VIPRQGYYIVE--VSGKSFLWEMVRRIVNAISYCGLGLLSREDVERMLSGEVDKKIPP 216
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
P E L L+ E++ +T+ DE + ++ +S +A + G+ +
Sbjct: 217 AP---PENLVLWRIEYEGITFETDEEGLKKARSEIFSRYSSALARAALFGDWL 266
>gi|337283917|ref|YP_004623391.1| tRNA pseudouridine synthase A [Pyrococcus yayanosii CH1]
gi|334899851|gb|AEH24119.1| tRNA pseudouridine synthase A [Pyrococcus yayanosii CH1]
Length = 266
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 34/293 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL+I Y G +HGFQ Q S T+ LL+ L++ L E F RTD GVSAF
Sbjct: 3 VALRIAYDGTQFHGFQRQPSL-RTVEGELLRVLEEVGL----EPVDFKGASRTDKGVSAF 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV + D L ++LN L D+ V+ + VP+ + RF +
Sbjct: 58 GNVVAFTV---------PDDAAHLVKPRVLNARL-EDVWVLGVAKVPKDFHPRFWAKSKV 107
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ GL++ AM + A VG HDF +++ + V R + A V
Sbjct: 108 YRYYLVGWGLNVGAMRECAALFVGEHDFSAFARLDGRDPV----RRILRASV-------- 155
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV--DIEKYPRKPVY 241
+ I I + FLW +R I++ + L G+G + ++ ++ + E+ + P
Sbjct: 156 --EERGPIVVVEIEGESFLWEMVRRIVTAVRLCGEGKLELGDVEAMLRGEFEESRKLPPA 213
Query: 242 PMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
P E L L+ +++ + + D V V ++L E +S +++A + + ++
Sbjct: 214 P---PEGLVLWAVKYEGVEFEVDAYTVELVRKELFERFSAAAVRAAIFEDFLR 263
>gi|313223491|emb|CBY41917.1| unnamed protein product [Oikopleura dioica]
Length = 281
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 41/209 (19%)
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDN----ELPYLKMLNNNLPRDIKVVAWSPVPEK 112
+ GV A V++L + S+L+ +E ++N E ++ ++N LP DI
Sbjct: 27 EKGVHAVNNVISLFVNSRLSE--DEINENVTVGERNFVAIINRQLPDDI----------- 73
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
W +GLD++ M +AA YL+G HDFRN + + N R+
Sbjct: 74 --------------WI-TSGLDVELMKEAASYLIGEHDFRNFSQAQLERQ--NTVRVCFA 116
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + + ++C F+I++ GFL+HQIR M++L LVG EK I+++L+D+
Sbjct: 117 ADIKQV-------PNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLDV 169
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
EKYPR+P Y + L L E++N+ W
Sbjct: 170 EKYPRRPSYKYANPDGLVLIDCEYENVEW 198
>gi|254786497|ref|YP_003073926.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901]
gi|237685680|gb|ACR12944.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901]
Length = 286
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 116/246 (47%), Gaps = 41/246 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ +AL + Y G ++ GFQ Q S+ +T+ L +A+ E+ + C GRTD+GV
Sbjct: 22 MQRVALGVEYLGASFRGFQKQASTPDTVQARLERAISAVA----AEEVTLVCAGRTDAGV 77
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
SA QV+ S + P + +L+ +N +LP ++V PV + ARF L
Sbjct: 78 SASGQVIHFDTLS--SRPLKA-------WLQGVNTHLPDAVRVTWAMPVSFHFHARFSAL 128
Query: 121 FRNYKYW----------FPQA------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R Y YW F Q LD++ M AA+ L+G HDF +
Sbjct: 129 SRTYHYWIQTEPVRSALFSQQLTWTGHSLDVERMQLAAESLLGEHDFSSFRAAQCQ---- 184
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
H+ V Q V F + + N+ F +R+ FL H +R ++ L LVG+G + P
Sbjct: 185 ------AHSPVREI-QAVSF-ERYGNLILFRVRANAFLHHMVRNLIGSLMLVGRGLQSPS 236
Query: 225 IIQQLV 230
I+QL+
Sbjct: 237 WIEQLL 242
>gi|312882128|ref|ZP_07741878.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370264|gb|EFP97766.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122]
Length = 264
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 118/271 (43%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q + + + L+K I K C GRTD+GV
Sbjct: 3 IALGIEYNGSQYFGWQRQKEVKS-----VQECLEKALSIVANHKVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+V + + + + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQIVHFETTASRKA---------VAWTMGANANLPKDIAVRWAKEVPDEFHARFSATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD+ MHKA QYL+G +DF +FR
Sbjct: 109 YRYLIFNDALRPGILSSGVSHYHGDLDVTQMHKAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N+ + SH +I++ F+ H +R I+ L +VG+G +KPE
Sbjct: 157 --ATHCQSKSPWRNLMHLNVTSHGKYIVVDIKANAFVHHMVRNIVGSLLVVGRGEKKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L+ I+ RK + E L L ++
Sbjct: 215 IRDLLAIKD--RKQAGATAKAEGLYLVDVDY 243
>gi|239791165|dbj|BAH72086.1| ACYPI006976 [Acyrthosiphon pisum]
Length = 157
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 71/103 (68%), Gaps = 6/103 (5%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + KILY G++YHGF Q S+ TI + L +AL CLIE ++ S++ CGRTD GVS
Sbjct: 57 RHVVFKILYLGWDYHGFATQDVSEKTIEYELFRALTICCLIESRQTSNYHRCGRTDKGVS 116
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVV 104
+F QV++L +RS G++S+ ELPY KMLN LP+DI+VV
Sbjct: 117 SFSQVISLTVRSN----GDDSE--ELPYCKMLNRLLPKDIRVV 153
>gi|374993009|ref|YP_004968508.1| pseudouridylate synthase I [Desulfosporosinus orientis DSM 765]
gi|357211375|gb|AET65993.1| pseudouridylate synthase I [Desulfosporosinus orientis DSM 765]
Length = 262
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 43/275 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSS-DNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
MR I LK+ Y G NYHGFQ Q + TI L K +K KEK + GRTD+G
Sbjct: 1 MRNICLKLAYDGTNYHGFQRQAEAYGPTIQGTLEKVWEKLV----KEKVAITMAGRTDAG 56
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
V A Q+V S++ + ++P K N+ LP+DI+++ VP+++S+R+
Sbjct: 57 VHALGQIVNFMTASRIP-------EEKIP--KAFNSLLPKDIRILQAECVPDEFSSRWSA 107
Query: 120 LFRNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
++ Y Y L ID M +AA + G H+F+ G
Sbjct: 108 KWKRYDYRIDNKLIPDIFNRLYAAHEPIPLKIDLMQQAALLMEGRHNFKTFAAS--GGDS 165
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+F R + Q + + + + GFL+H +R I+ L VG+G P
Sbjct: 166 KSFERTIYRC---------QVYEEDNKMIRVSCVGDGFLYHMVRIIVGTLLEVGKGKTLP 216
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
+ I +++ + R + RG L L H + N
Sbjct: 217 QKIPEIIASQDRDRARMIAPARG--LTLIHVNYSN 249
>gi|408383137|ref|ZP_11180676.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
gi|407814245|gb|EKF84877.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
Length = 274
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 33/237 (13%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +ALK+ Y G ++GFQ Q + T+ LLKAL+K+ I + +SS++ GRTD GV
Sbjct: 1 MIRVALKVAYLGTAFYGFQRQPNL-RTVEGELLKALEKSGAITNLGQSSYSIAGRTDRGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A VV+ D E P + +N+ LP DI+++ PVP+ + R+
Sbjct: 60 HALGNVVSF------------CTDKE-PIINQVNDVLPMDIRILGSCPVPQGFKTRY-AY 105
Query: 121 FRNYKYWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
R+Y+Y + D+D M +AA + GTH+F N + N N + R V +T
Sbjct: 106 KRHYRYVLCRKTGEEEWDLDKMQEAAHLMEGTHNFINFSRRNERNPI----RKVDSVRIT 161
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ Q C ++ + FLW+ +R ++++L VG+ E +++ D E
Sbjct: 162 AENQG----------CLVDVEGESFLWNMVRKMVTILLCVGKHEMGIEEVEKCFDPE 208
>gi|90021726|ref|YP_527553.1| pseudouridylate synthase [Saccharophagus degradans 2-40]
gi|89951326|gb|ABD81341.1| tRNA pseudouridine synthase A [Saccharophagus degradans 2-40]
Length = 289
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 117/256 (45%), Gaps = 52/256 (20%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + L++ Y G Y GFQ Q ++ NT+ L KAL E + C GRTD+GV
Sbjct: 22 MRRVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVA----NEPVTIVCAGRTDAGV 77
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q+V T G S +L+ +N +LP I+V++ V + ARF L
Sbjct: 78 HATSQIVHFD-----TLAGRPSKA----WLQGVNTHLPFSIRVISAKEVGFDFHARFSAL 128
Query: 121 FRNYKY-----------------W--FPQ--AGLDIDAMHKAAQYLVGTHDFRNLCKMNV 159
R Y+Y W PQ +GLD+ AM +AA L+G HDF
Sbjct: 129 SRTYRYVIHVSQVRSAHLVNGVTWVKLPQKLSGLDVPAMQEAASLLLGEHDF-------- 180
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEF---NIRSQGFLWHQIRCIMSVLFLV 216
+FR + H S + ++ D + EF + + FL H +R I+ VL V
Sbjct: 181 ----TSFRTV--HCQAASPVRTMEVADV-VQMGEFIVVQVTANAFLHHMVRNIVGVLLRV 233
Query: 217 GQGNEKPEIIQQLVDI 232
G+G KP + +L+++
Sbjct: 234 GRGELKPSRVTELIEL 249
>gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304]
gi|3915163|sp|O28544.1|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM
4304]
Length = 265
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 120/269 (44%), Gaps = 41/269 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M A KI Y G N+HG Q Q T+ ++ AL++ + E GRTD+GV
Sbjct: 1 MMKFAFKIAYFGDNFHGSQFQPDQ-RTVEGEVINALRRLGV----ENPRLRSAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV++ S+D P +MLN LP DI AW+ V E + R
Sbjct: 56 HAYGQVISFY-----------SEDKIFP--RMLNAELPEDITAWAWAKVSEDFDPR-RAK 101
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R Y Y + DI AM KA + L+G HDF N K G G R +++ A +
Sbjct: 102 SRVYTYVMYGSDYDISAMRKAVKELIGVHDFSNFTK-KFGEGESCVREIIS-ADIR---- 155
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK-- 238
+ F I F W+ +RCI++ + +G+ + E + L++ EK+ +
Sbjct: 156 ------ADREFIIFEIEGNAFTWNMVRCIVTAIMEIGKQHRSIEWFRDLLNPEKHKERVE 209
Query: 239 --PVYPMVRGEPLNLYHTEFDNLTWHYDE 265
P Y ++ L ++D++ + D+
Sbjct: 210 PAPPYGLI------LKDVKYDDVEFEIDD 232
>gi|333986897|ref|YP_004519504.1| tRNA pseudouridine synthase A [Methanobacterium sp. SWAN-1]
gi|333825041|gb|AEG17703.1| tRNA pseudouridine synthase A [Methanobacterium sp. SWAN-1]
Length = 271
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 141/299 (47%), Gaps = 41/299 (13%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +A K+ Y G +++GFQ Q + T+ LL A +K L++D + S ++ GRTD GV
Sbjct: 1 MGGVAFKVAYIGTDFYGFQRQPNR-RTVEEELLNAFKKANLMDDPKSSRYSIAGRTDRGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A VV+ SK+ + +N+ L +I+++ + VP + RF
Sbjct: 60 HAMGNVVSFVTDSKVI-------------INQINDYLVDEIQIIGKAEVPYNFKPRF-AE 105
Query: 121 FRNYKYWF---PQAG--LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
R Y+Y P G LD++ M KA++ GTH+F N K N + + R + +
Sbjct: 106 SRYYRYVLVDDPLDGRDLDVNKMIKASKIFEGTHNFSNFSKRNERSPI----RTIEDINI 161
Query: 176 TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
+ ++ + FLW+ +R +++VL VG+G + + +L++ Y
Sbjct: 162 I----------EKKGLIMVDVVGESFLWNMVRRMVAVLLKVGRGQMELNEVAELLNSISY 211
Query: 236 PRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDW----SLLSIKATMLG 290
P++ +V + L L ++D + + YD L+ L ++ ++ +++ M+G
Sbjct: 212 A--PIF-LVPPDGLILMDVKYDGVEFEYDRYARKKFLKTLKTEYLQKKTIAAVQKEMMG 267
>gi|18977290|ref|NP_578647.1| tRNA pseudouridine synthase A [Pyrococcus furiosus DSM 3638]
gi|397651422|ref|YP_006492003.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
gi|24638312|sp|Q8U2C1.1|TRUA_PYRFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|18892961|gb|AAL81042.1| putative tRNA pseudouridine synthase a [Pyrococcus furiosus DSM
3638]
gi|393189013|gb|AFN03711.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
Length = 266
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 32/290 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALKI Y G +HGFQ Q + TI +L+AL+ + E +F RTD GVSA
Sbjct: 3 VALKIAYDGTKFHGFQRQPNV-RTIEGEILRALKDAGI----EFENFKSASRTDRGVSAR 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
V+ L ++D+ + +LN+ + D+ + + VPE + RF +
Sbjct: 58 GNVIALS-----------TEDDRIKNPMVLNSRMS-DVWIWGIAEVPEDFHPRFWANTKV 105
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ P G++I M + + +GTHDF +++ + + + R+ W+
Sbjct: 106 YRYYLPSLGMNIKKMKECSLLFLGTHDFSAFSRVDGRDTIRSIDRI-------EIWEKC- 157
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
N+ I + FLW +R I+S L L QG E I ++++ K+ + P
Sbjct: 158 ------NVVVVEIEGKSFLWEMVRRIVSALVLCSQGVLAEERIVEMLN-GKFEKSRKVPP 210
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMI 293
E L L+ +++N+ + D + R++ E + L + + + ++I
Sbjct: 211 APPEGLLLWDIKYENVEFQIDNASLKKFQREIVERFKLHASLSALYEDLI 260
>gi|406945195|gb|EKD76770.1| tRNA pseudouridine synthase A [uncultured bacterium]
Length = 262
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 119/274 (43%), Gaps = 54/274 (19%)
Query: 4 IALKILYQGFNYHGFQIQ---TSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
IAL + Y G +HG+Q Q +S T+ H L + + S C GRTD+GV
Sbjct: 5 IALGVCYDGSRFHGWQHQEEVSSVQQTVEHALSRVANQPI--------SVVCAGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QVV E++ E ++ N+NLP D+ V+ + ARF L
Sbjct: 57 HASAQVVHFDT---------EAERTERSWVFGANSNLPSDVSVLWAKKTTSDFHARFSAL 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
R Y+Y W+ + LD+D+MH+AAQYL+G HDF G
Sbjct: 108 SRTYRYIICNQPVRPGIFNKTVGWYYKP-LDVDSMHRAAQYLLGEHDFSAF--RGSGCQA 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R++ H V Q V +R+ FL H +R I+ VL +G+G +KP
Sbjct: 165 QHAVRIIHHLKVERRGQMVV----------IEVRANAFLLHMVRNIVGVLQEIGEGEKKP 214
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
E + +++ + R + P LY + D
Sbjct: 215 EWVIEVL----HSRDRRCASITSAPNGLYLVDID 244
>gi|319792244|ref|YP_004153884.1| tRNA pseudouridine synthase a [Variovorax paradoxus EPS]
gi|315594707|gb|ADU35773.1| tRNA pseudouridine synthase A [Variovorax paradoxus EPS]
Length = 273
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 112/272 (41%), Gaps = 41/272 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G Y G+Q Q S T+ L AL K + + C GRTD+GV A
Sbjct: 3 LALGIRYNGQAYEGWQSQRSG-RTVQDKLEAALAKFA-ADPSGRIGTLCAGRTDAGVHAL 60
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV E + +++ N LP DI V PVP+++ R L R
Sbjct: 61 MQVVHFDT---------EIEREPFSWMRGTNRFLPDDIAVQWAQPVPDEFHCRASALARR 111
Query: 124 YKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVN 165
Y Y Q+ LD DAM KAA L+GTHDF + + V N
Sbjct: 112 YLYVLSQSPVRPSLDSGRVGWSMHPLDGDAMRKAAAVLIGTHDFSSFRASACQAKSPVKN 171
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
RR+ + + D F + FL H IR +M L +G+G+E+PE
Sbjct: 172 LRRI----------EITRVGDGERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEW 221
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I ++ +E RK P + L +D
Sbjct: 222 IAEV--LEARSRKVAAPTFSADGLYFLGPLYD 251
>gi|395644499|ref|ZP_10432359.1| tRNA pseudouridine synthase A [Methanofollis liminatans DSM 4140]
gi|395441239|gb|EJG05996.1| tRNA pseudouridine synthase A [Methanofollis liminatans DSM 4140]
Length = 297
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 32/254 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A ++ Y G N+ G Q+Q T+ ++ ++ L +D + FA GRTD GV+A
Sbjct: 3 LAFRLGYWGENFFGSQVQAEV-RTVEGEVIATCRRVGLFDDPGAARFAFAGRTDRGVNAV 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV S + + L LP DI W+ V + +S R + R
Sbjct: 62 GQVCAF------------STEEPERAVAALGFELPGDIWTTGWATVHDGFSPRKEARSRT 109
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+F + D+ AM +AAQ VG HDF + + + + R V AGV
Sbjct: 110 YRYYFSEEFGDVPAMDEAAQEFVGEHDFTRFSRQSERSPI----RRVISAGVR------- 158
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ F + ++ FLW+ +RC+ L VG+G E I+ L+ + R P
Sbjct: 159 ---EEDDFRVFEVTAESFLWNMVRCMAWSLAAVGRGEMSREEIRALLQRQGERRVPA--- 212
Query: 244 VRGEPLNLYHTEFD 257
P L T+ D
Sbjct: 213 --ARPEGLILTDVD 224
>gi|398808576|ref|ZP_10567439.1| pseudouridylate synthase I [Variovorax sp. CF313]
gi|398087608|gb|EJL78194.1| pseudouridylate synthase I [Variovorax sp. CF313]
Length = 273
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 111/272 (40%), Gaps = 41/272 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G Y G+Q Q S T+ L AL K + K C GRTD+GV A
Sbjct: 3 LALGIRYNGQAYEGWQSQRSG-RTVQDKLEAALTKFA-AQPSGKIGTLCAGRTDAGVHAL 60
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + + N LP DI V PVP+++ R L R
Sbjct: 61 MQVVHFDT---------DVEREPFSWTRGTNRFLPDDIAVQWAHPVPDEFHCRASALARR 111
Query: 124 YKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVN 165
Y Y Q+ LD DAM KAA L+GTHDF + + V N
Sbjct: 112 YLYVLSQSPVRPSLDSGRVGWSMHALDGDAMRKAAAVLIGTHDFSSFRASACQAKSPVKN 171
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
RR+ Q + + F + FL H IR +M L +G+G+E+PE
Sbjct: 172 LRRI----------QVTRVGEGERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEW 221
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I ++ +E RK P + L +D
Sbjct: 222 IAEV--LEARSRKAAAPTFSADGLYFLGPLYD 251
>gi|67624003|ref|XP_668284.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659475|gb|EAL38050.1| hypothetical protein Chro.80602 [Cryptosporidium hominis]
Length = 210
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 20/159 (12%)
Query: 90 LKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ-------------AGLDID 136
++MLN LP DI+V+ + V +SARFDC +R YKY+FP +
Sbjct: 1 MEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKYFFPLNHERTKISKFPKIPPEQVP 60
Query: 137 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNI 196
M AA+ +GTHD+R CKM++ N R+ T+ + ++ F D + I
Sbjct: 61 LMDIAAKQFLGTHDYRRFCKMDLKN-----RKNQTYIRTIYEF-DINFVDENRTFAVATI 114
Query: 197 RSQGFLWHQIRCIMSVLFLVGQGNEKPEII-QQLVDIEK 234
+ FLWHQ+R +M +LF +GQ PE+I Q L D+E+
Sbjct: 115 KGSAFLWHQVRLMMGILFEIGQQKFNPEVITQMLTDVEQ 153
>gi|167770549|ref|ZP_02442602.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM
17241]
gi|167667144|gb|EDS11274.1| tRNA pseudouridine synthase A [Anaerotruncus colihominis DSM 17241]
Length = 246
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 119/269 (44%), Gaps = 48/269 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + L I Y+G YHG+Q+Q ++ T+A + A+++ E+ C RTD+GV
Sbjct: 1 MRHLLLTIRYRGTRYHGYQVQQNA-VTVAQTVQDAVERIF----GERLPIKGCSRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A C +TL+ S + ++ +N +LP DI V VPE + R+DC
Sbjct: 56 HANCFALTLRTASVMACDA---------VVRAMNVHLPSDIAVTGCREVPEAFHPRYDCK 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y F + LD M AAQ VGTHDF C + G+GV
Sbjct: 107 GKRYLYRIYNGTVRDPFSADLALFWKYPLDERRMDAAAQGFVGTHDFAAFC--SSGSGVQ 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP- 223
+ R VT A VT H + +++ GFL++ +R ++ L +G P
Sbjct: 165 DTVRTVTDASVT----------RHGDFVIYSVTGNGFLYNMVRIMVGTLLEAARGVYTPA 214
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
+++ L ++ P P P LY
Sbjct: 215 DVLHMLEGRDRSAAGPTAP-----PHGLY 238
>gi|449528776|ref|XP_004171379.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis
sativus]
Length = 198
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 5/124 (4%)
Query: 138 MHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIR 197
M +A + VG HDFRN CKM+ N V N+RR + ++ + N + FNI
Sbjct: 1 MERAGKKFVGEHDFRNFCKMDAAN-VHNYRRRIMSFDISPCDVRTEGNP----LWAFNIE 55
Query: 198 SQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
FLWHQ+RC+++V+F+VGQ E P++I L+D + PRKP Y M PL L+ EF+
Sbjct: 56 GSAFLWHQVRCMVAVVFMVGQDLEDPDVIDILLDPLRTPRKPQYVMASENPLVLHSCEFE 115
Query: 258 NLTW 261
+ +
Sbjct: 116 GVKF 119
>gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
Length = 259
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 124/282 (43%), Gaps = 46/282 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
+R +ALK+ Y G + GFQ Q T+ L +AL + KE GRTD+GV
Sbjct: 3 VRHVALKVAYDGTAFSGFQRQPGL-RTVQGVLEEALARLT----KETCQVKGAGRTDAGV 57
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QVV+ + S + +P + LN LP D+ V+A + VPE++ R+D +
Sbjct: 58 HAEGQVVSFRTASSIPTPR---------LVPALNGLLPPDVAVLAAAEVPEQFHPRYDAV 108
Query: 121 FRNYKYWF-----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y F P+ LD++ M +AA YL G HDFR N G V
Sbjct: 109 SKVYRYTFFRRAVRCPLTRFYALHVPEP-LDVERMREAAAYLGGRHDFRAF--QNTGRPV 165
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R V + A F I + GFL+ +R I L +G+G +P
Sbjct: 166 KSSVRTVFSCRLEEAG----------PFLYFWIEADGFLYQMVRVIAGTLLEIGRGKLEP 215
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDE 265
+I L +EK R+ + P L L ++ + D+
Sbjct: 216 SVI--LAALEKGERQLLGPTAPPHGLCLVQVKYPQDPFGEDD 255
>gi|268608385|ref|ZP_06142112.1| tRNA pseudouridine synthase A [Ruminococcus flavefaciens FD-1]
Length = 257
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 122/287 (42%), Gaps = 52/287 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSS---DNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR + + I Y+G NYHGFQIQ ++ T+ HL K L E S C RTD
Sbjct: 1 MRNLKVTIAYRGTNYHGFQIQNNAVTVQGTLEKHLSKVLN--------EPVSITGCSRTD 52
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
+GV A +K S++++ G + + +N LP DI +++ VP + ARF
Sbjct: 53 TGVHANMFCFNVKTNSRISTLG---------FCRGVNGELPDDISILSCEEVPIDFHARF 103
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCK--MNV 159
DC + Y Y + + DI+A KAAQY VGTHDF + C NV
Sbjct: 104 DCKGKEYIYKMHCSESKDPFAPDMKFHYRRPFDIEAARKAAQYFVGTHDFSSFCADCTNV 163
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
V R + + ++ V ++ GFL++ IR + L V +
Sbjct: 164 STTV----RTIYSFKIENSGDTVI----------MLVKGNGFLYNMIRIMAGTLIDVSEK 209
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEI 266
P+ + ++++ + + M G LN D L E+
Sbjct: 210 RFSPDDMPRILEAKDRLQAGRTAMAHGLYLNRVFYSTDELLKEQKEV 256
>gi|167629501|ref|YP_001680000.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1]
gi|167592241|gb|ABZ83989.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1]
Length = 259
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + L + Y G YHGFQ Q +N + AL + + E+ C GRTD+GV
Sbjct: 4 RRLKLTVAYDGTCYHGFQTQ---ENPALPTIQDALVRAIKVLTGEEVKVNCAGRTDAGVH 60
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV S + D+ P+ +N LP D+ VVA VP + +RF L
Sbjct: 61 ARGQVVDFVTSSPIP-------DDRFPF--AMNAILPPDVAVVAAKTVPLAFHSRFGALG 111
Query: 122 RNYKYW------------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
++Y+Y FP L +AM AAQ VGTHDFR C G+ V
Sbjct: 112 KHYRYTIYNHRIPSPFHRRYSHQVFPP--LQFEAMAAAAQCFVGTHDFRGFCA--TGSPV 167
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN--- 220
+F R V +T + H + ++ GFL++ IR I L VG+G
Sbjct: 168 KDFVRTVYRCDLTR-------QEEHRLV--LDVMGNGFLYNMIRIIAGTLIDVGKGKIAL 218
Query: 221 -EKPEII 226
E P II
Sbjct: 219 EEIPAII 225
>gi|110803601|ref|YP_698382.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110684102|gb|ABG87472.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 248
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 44/256 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQT---SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR I + + Y G Y G+Q Q S+ +T+ L K L K E+ CGRTD
Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMT----SEEIQLIGCGRTD 56
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
SGV A V K S +T +K +N LP DI+V E++ ARF
Sbjct: 57 SGVHAKNYVANFKTNSLMTLE---------QIIKYINEYLPEDIRVKEIREASERFHARF 107
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ + Y+Y W + LD++AM + A+YL+GTHDF++ + N
Sbjct: 108 NVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+++F++ ++NI I GFL + +R I+ L VG G
Sbjct: 168 -----------KSTLRTINSIEFHE-NNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKI 215
Query: 222 KPEIIQQLVDIEKYPR 237
+P+ I +++ ++ +
Sbjct: 216 EPKYINDILEAKERAK 231
>gi|70952957|ref|XP_745611.1| tRNA pseudouridine synthase [Plasmodium chabaudi chabaudi]
gi|56525989|emb|CAH74339.1| tRNA pseudouridine synthase, putative [Plasmodium chabaudi
chabaudi]
Length = 279
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 103/203 (50%), Gaps = 16/203 (7%)
Query: 17 GFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLT 76
G Q ++NT+ + L++ L + LI D SF+ RTD G + ++ L IR K+
Sbjct: 1 GSAYQKDNNNTVENKLIERLHQLDLISD-SNCSFSRVSRTDKGSA---RMNALTIRLKIK 56
Query: 77 SPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDID 136
P E YLK LN L ++I++V VP + AR +C+ R Y Y+F +I
Sbjct: 57 YPHLSISIIEKIYLKELNKKL-KNIQIVHIQCVPNNFDARLNCIQRTYLYFFVNKNYNIP 115
Query: 137 AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNI 196
M++AA+ +G HDF N CK ++F R + + QN + F I
Sbjct: 116 RMNEAAKIFLGEHDFSNFCKK--RKNTISFIRTIHKFEIKRIDQNFYY---------FKI 164
Query: 197 RSQGFLWHQIRCIMSVLFLVGQG 219
+ FL++QIR +++ LFLVG+G
Sbjct: 165 KGTSFLYNQIRHMVASLFLVGKG 187
>gi|323703515|ref|ZP_08115161.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
gi|323531506|gb|EGB21399.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
Length = 249
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 111/251 (44%), Gaps = 47/251 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
M+ I L + Y G NYHGFQ Q + T+ L AL K E GRTD+G
Sbjct: 3 MKNIKLTVAYDGTNYHGFQEQRGTGLATVQEVLEAALSKVA----NETVQVIGAGRTDAG 58
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKM---LNNNLPRDIKVVAWSPVPEKYSAR 116
V A QVV + S + +P K+ +N+ LP DI V+ VP + AR
Sbjct: 59 VHARGQVVNFR-----------STNWPVPTEKIHLAVNSLLPDDIAVIKAEEVPLDFHAR 107
Query: 117 FDCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 160
F + Y+Y + LDI+AM +AAQYL+GTHDF++ G
Sbjct: 108 FSATAKTYRYSIYNHRVMSPLHRLYAYHEPRPLDIEAMRQAAQYLLGTHDFKSFQAQ--G 165
Query: 161 NGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
V + R + A + S + +R GFL++ +R I L VG+G
Sbjct: 166 TPVKDTVRTIYRAELV----------SEPPLIHLYLRGNGFLYNMVRIITGTLLDVGKGK 215
Query: 221 EKPEIIQQLVD 231
+ P ++ +++
Sbjct: 216 KSPPEMKSIIE 226
>gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
Length = 248
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 44/256 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQT---SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR I + + Y G Y G+Q Q S+ +T+ L K L K E+ CGRTD
Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMT----SEEIQLIGCGRTD 56
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
SGV A V K S +T ++ +N LP DI+V E++ ARF
Sbjct: 57 SGVHAKNYVANFKTNSLMTLE---------QIIEYINEYLPEDIRVTEIREASERFHARF 107
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ + Y+Y W + LD++AM + A+YL+GTHDF++ + N
Sbjct: 108 NVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+++F++ ++NI I GFL + +R I+ L VG G
Sbjct: 168 -----------KSTLRTINSIEFHE-NNNILSIKINGNGFLLNMVRIIVGTLVNVGLGKI 215
Query: 222 KPEIIQQLVDIEKYPR 237
+P+ I +++ ++ +
Sbjct: 216 EPKYINDILEAKERAK 231
>gi|168211805|ref|ZP_02637430.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|170710235|gb|EDT22417.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 248
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 44/256 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQT---SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR I + + Y G Y G+Q Q S+ +T+ L K L K E+ CGRTD
Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMT----SEEIQLIGCGRTD 56
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
SGV A V K S +T ++ +N LP DI+V E++ ARF
Sbjct: 57 SGVHAKNYVANFKTNSLMTLE---------QIIEYINEYLPEDIRVTEIREASERFHARF 107
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ + Y+Y W + LD++AM + A+YL+GTHDF++ + N
Sbjct: 108 NVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+++F++ ++NI I GFL + +R I+ L VG G
Sbjct: 168 -----------KSTLRTINSIEFHE-NNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKI 215
Query: 222 KPEIIQQLVDIEKYPR 237
+P+ I +++ ++ +
Sbjct: 216 EPKYINDILEAKERAK 231
>gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|422345695|ref|ZP_16426609.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|422873893|ref|ZP_16920378.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|373227360|gb|EHP49674.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|380305126|gb|EIA17407.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 248
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 44/256 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQT---SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR I + + Y G Y G+Q Q S+ +T+ L K L K E+ CGRTD
Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMT----SEEIQLIGCGRTD 56
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
SGV A V K S +T ++ +N LP DI+V E++ ARF
Sbjct: 57 SGVHAKNYVANFKTNSLMTLE---------QIIEYINEYLPEDIRVTEIREASERFHARF 107
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ + Y+Y W + LD++AM + A+YL+GTHDF++ + N
Sbjct: 108 NVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+++F++ ++NI I GFL + +R I+ L VG G
Sbjct: 168 -----------KSTLRTINSIEFHE-NNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKI 215
Query: 222 KPEIIQQLVDIEKYPR 237
+P+ I +++ ++ +
Sbjct: 216 EPKYINDILEAKERAK 231
>gi|357017355|gb|AET50706.1| hypothetical protein [Eimeria tenella]
Length = 319
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Query: 89 YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGT 148
Y+ +LN LP DI+V+A + VP + ARFDCLFR YKY+F AGLDI M AA+ +G
Sbjct: 18 YVPLLNRLLPPDIRVLAATQVPPTFDARFDCLFRVYKYFFGTAGLDISRMRAAAKQFLGM 77
Query: 149 HDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRC 208
H+F CK++ +RR++ +++ + + I FLWHQ+R
Sbjct: 78 HNFLRFCKVDRKQERSLWRRIIRF--------DLELQEDGFGVA--TIVGVSFLWHQVRY 127
Query: 209 IMSVLFLVGQGNEKPEIIQQLV 230
+M+ L VG+G I L+
Sbjct: 128 MMAALMEVGRGAWAAACISTLL 149
>gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4]
Length = 255
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 39/243 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I + + Y G Y G+Q Q ++DNTI L L + E+ GRTD+GV A
Sbjct: 5 IRITLEYDGSRYDGWQKQGNTDNTIQGKLENVLFRMA----GEEIEVHGSGRTDAGVHAR 60
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV I +++ GE + + LN LP DI+V++ VPE++ +R +
Sbjct: 61 GQVANFHINAEICPDGEAARE-------YLNRYLPDDIRVLSAKIVPERFHSRLSATSKT 113
Query: 124 YKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y+ LD+ AM +AA++L+G HDF++ C N R
Sbjct: 114 YGYYVETGDKKNVFERKYVYGCGKKLDVKAMRQAAEFLIGEHDFKSFC--------ANRR 165
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
+ + V+ H EF GFL++ +R + L VG G +PE ++
Sbjct: 166 MKKSTVRRIDEIRIVE----HGTKLEFLYTGNGFLYNMVRILTGTLLEVGSGTRRPEKMK 221
Query: 228 QLV 230
+++
Sbjct: 222 EII 224
>gi|158319577|ref|YP_001512084.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
gi|158139776|gb|ABW18088.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
Length = 248
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 44/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I ++I Y G NY G+Q+Q ++ TI ++KAL+K +E K+ GRTD+GV
Sbjct: 1 MRNIMIEIEYDGSNYSGWQVQPNAI-TIQEEIMKALKK---LEGKD-VVIHGSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A+ QV T + + P E LP +N+NLP+DI ++ VP + AR+
Sbjct: 56 HAYGQVATFLMERNI--PVER-----LPL--AMNSNLPKDITIIDAKEVPMDFHARYSAI 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ RNY Y LD M +A++ L+GTHDFR M+ G+ V
Sbjct: 107 GKRYIYHIYESRYRSAILRNYSYHI-NYKLDRSKMMEASKLLIGTHDFRGF--MSNGSSV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R + ++++F NI I GFL++ +R I L +G GN+
Sbjct: 164 EDTVRTI---------KSLEFKSDGENIYMI-IEGDGFLYNMVRIITGTLVQIGAGNKPL 213
Query: 224 EIIQQLV 230
E I++++
Sbjct: 214 EQIEKIL 220
>gi|343502530|ref|ZP_08740379.1| tRNA pseudouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|418481529|ref|ZP_13050567.1| tRNA pseudouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342814160|gb|EGU49110.1| tRNA pseudouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|384570860|gb|EIF01408.1| tRNA pseudouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 264
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 117/271 (43%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q + + + L++ I C GRTD+GV
Sbjct: 3 IALGIEYNGTQYFGWQRQREVKS-----VQEKLERALSIVANHPIEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + N NLP DI V VPE++ ARF R
Sbjct: 58 GQVVHFDT---------TATRKMVAWTMGANANLPDDIAVRWAKEVPEEFHARFSATARR 108
Query: 124 YKYWFPQAGL----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + L D + MH+AAQYL+G +DF +FR
Sbjct: 109 YRYIIFNSALRPGILSSGVSHYHGELDENKMHQAAQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N+ N + HN +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --ATHCQSRSPWRNMMHINVTRHNQYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I++L++I+ RK + E L L ++
Sbjct: 215 IKELLEIKD--RKQAGATAKAEGLYLVDVDY 243
>gi|295838433|ref|ZP_06825366.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74]
gi|197695769|gb|EDY42702.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74]
Length = 284
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 37/235 (15%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L + Y G +HG+ Q + T+ L +AL+ + E GRTD+GV A Q
Sbjct: 5 LDLSYDGTEFHGWARQPAGRRTVQETLEEALR--VVTRAPEPYELTVAGRTDAGVHARGQ 62
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V +++ ++ + E LK L LP+D++V +P PE + ARF ++R Y
Sbjct: 63 VAHVEMADEVWAEHGEK------LLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYA 116
Query: 126 YWFP-QAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
Y Q G LDIDAM++AA+ L+G HDF CK G R
Sbjct: 117 YRVADQPGGADPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKR--EGATTIRE 174
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ Q + + + E +R+ F + +R ++ L VG G+ P
Sbjct: 175 M----------QRLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPP 219
>gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
Length = 248
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 44/256 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQT---SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR I + + Y G Y G+Q Q S+ +T+ L K L K E+ CGRTD
Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMT----SEEIQLIGCGRTD 56
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
SGV A V K S +T ++ +N LP DI++ E++ ARF
Sbjct: 57 SGVHAKNYVANFKTNSLMTLE---------QIIEYINEYLPEDIRITEIREASERFHARF 107
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ + Y+Y W + LD++AM + A+YL+GTHDF++ + N
Sbjct: 108 NVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+++F++ ++NI I GFL + +R I+ L VG G
Sbjct: 168 -----------KSTLRTINSIEFHE-NNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKI 215
Query: 222 KPEIIQQLVDIEKYPR 237
+P+ I +++ ++ +
Sbjct: 216 EPKYINDILEAKERAK 231
>gi|302388745|ref|YP_003824566.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM
16646]
gi|302199373|gb|ADL06943.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM
16646]
Length = 243
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 112/247 (45%), Gaps = 50/247 (20%)
Query: 6 LKIL--YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+KIL Y G NYHG+Q Q + A + + L+K E+ S GRTD+GV A
Sbjct: 3 VKILLEYDGTNYHGWQKQNN-----ALSVQEVLEKAIYALTGERVSIIGAGRTDAGVHAR 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC---- 119
QV + +++ P E LPY +N+ LP DI V VP+ + AR+
Sbjct: 58 GQVANFRTNTRI--PVER-----LPY--AINSKLPEDIAVKGAEAVPDDFHARYSAKAKV 108
Query: 120 -------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
L R Y Y+FP LD++AM +AA+ +G HDF F
Sbjct: 109 YTYSIYNAPFPSPLLRRYSYFFPLP-LDVEAMRRAAKAFIGVHDF------------AAF 155
Query: 167 RRLVTHAGVTSAWQNVQFNDSHH--NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + + V ++ +N+ D + + + GFL++ +R I L VG G + PE
Sbjct: 156 R--ASGSSVKTSVRNITRLDVKKCGKLLTIEVEADGFLYNMVRIIAGTLLEVGTGKKDPE 213
Query: 225 IIQQLVD 231
I +++
Sbjct: 214 EIPSIIE 220
>gi|18311353|ref|NP_563287.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|42559846|sp|Q8XHV5.1|TRUA2_CLOPE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|18146037|dbj|BAB82077.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 244
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 44/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G +Y G+Q Q NTI + +A++K KE+ RTDSGV
Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIG-NTIQQKVEEAIKKVT----KEEVEILGSSRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A V K S + PG+ + LN+ LP+DI ++ V E + AR+
Sbjct: 56 HAKAYVANFKTNSNI--PGKN-------FKAALNSKLPKDIVIINSEEVAEDFHARYMTT 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y + LD+++M +A +Y +G HDF+ + G V
Sbjct: 107 GKTYCYTILNREEPPALERNYVYHVKKQ-LDVESMKEACKYFLGKHDFKAFQRP--GGTV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R +T + ++ N + + + GFL++ +R I+ L VG+G EKP
Sbjct: 164 KTSVRTITDIHI----------ETEGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKP 213
Query: 224 EIIQQLVD 231
E I++++D
Sbjct: 214 EYIKEVID 221
>gi|114567807|ref|YP_754961.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122317314|sp|Q0AUL4.1|TRUA_SYNWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114338742|gb|ABI69590.1| Pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 249
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 123/270 (45%), Gaps = 50/270 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M I L + Y G NYHGFQ+Q ++ NT+ L KA+ + E+++ C GRTD+GV
Sbjct: 1 MSRIKLLLEYDGSNYHGFQLQKNA-NTVQAELEKAIYRL----SGERATIVCAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QVV S T PG+ + LN+ LP DI+V+ +++ RFD L
Sbjct: 56 HAWGQVVAFD--SCSTIPGDR-------WAYALNSQLPEDIQVLESQETRAEFNPRFDAL 106
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y + L ++AM +AA+ L G +FR+ C G+
Sbjct: 107 KKCYGYLIYRQKKKATFYRHYALCNTEPLKLEAMQEAAEILKGRQNFRSFCAS--GSSAR 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
F R + H + S C +I + GFL++ +R I L VG+G P
Sbjct: 165 TFEREIFHCRL-----------SEKGPCLLLHIAADGFLYNMVRIITGTLLEVGKGKYPP 213
Query: 224 EIIQQLVDIEKYPRK-PVYPMVRGEPLNLY 252
+ +++++ + R P P P LY
Sbjct: 214 QHLREIIASQDRTRAGPTAP-----PQGLY 238
>gi|110800554|ref|YP_695694.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|110675201|gb|ABG84188.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
Length = 248
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 44/256 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQT---SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR I + + Y G Y G+Q Q S+ +T+ L K L K E+ CGRTD
Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMT----SEEIQLIGCGRTD 56
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
SGV A V K S +T ++ +N LP DI+V E++ ARF
Sbjct: 57 SGVHAKNYVANFKTNSLMTLE---------QIIEYINEYLPEDIRVKEIREASERFHARF 107
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ + Y+Y W + LD++AM + A+YL+GTHDF++ + N
Sbjct: 108 NVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+++F++ ++NI I GFL + +R I+ L VG G
Sbjct: 168 -----------KSTLRTINSIEFHE-NNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKI 215
Query: 222 KPEIIQQLVDIEKYPR 237
+P+ I +++ ++ +
Sbjct: 216 EPKYINDILEAKERAK 231
>gi|294630922|ref|ZP_06709482.1| tRNA pseudouridine synthase A [Streptomyces sp. e14]
gi|292834255|gb|EFF92604.1| tRNA pseudouridine synthase A [Streptomyces sp. e14]
Length = 284
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 43/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G +HG+ Q T+ + AL+ + +E GRTD+GV A
Sbjct: 12 VRLDLSYDGSAFHGWAKQAGGKRTVQGEIEDALR--TVTRSQETYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P + ++ LK L LPRD++V A P P ++ARF ++R
Sbjct: 70 GQVAHVDL------PEQVWREHHEKLLKRLAGRLPRDVRVWALRPAPSGFNARFSAVWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNEAARRLLGEHDFAAYCKKR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + I +R+ F + +R ++ L VG G+ P
Sbjct: 179 TTIRTL----------QELSLRRGADGIITATVRADAFCHNMVRSLIGALLFVGDGHRTP 228
Query: 224 E 224
+
Sbjct: 229 D 229
>gi|333922481|ref|YP_004496061.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333748042|gb|AEF93149.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 249
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 111/251 (44%), Gaps = 47/251 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
M+ I L + Y G NYHGFQ Q + T+ L AL K E GRTD+G
Sbjct: 3 MKNIKLTVAYDGTNYHGFQEQRGTGLATVQEVLEAALSKVA----NETVQVIGAGRTDAG 58
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKM---LNNNLPRDIKVVAWSPVPEKYSAR 116
V A QVV + S + +P K+ +N+ LP DI V+ VP + AR
Sbjct: 59 VHARGQVVNFR-----------STNWPVPTEKIHLAVNSLLPDDIAVIKAEEVPLDFHAR 107
Query: 117 FDCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 160
F + Y+Y + LDI+AM +AAQYL+GTHDF++ G
Sbjct: 108 FSATAKTYRYSIYNHRVMSPLHRLYAYHEPRPLDIEAMRQAAQYLLGTHDFKSFQAQ--G 165
Query: 161 NGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
V + R + A + S + +R GFL++ +R I L VG+G
Sbjct: 166 TPVKDTVRTIYRAELV----------SEPPLIHLYLRGNGFLYNMVRIITGTLLDVGKGK 215
Query: 221 EKPEIIQQLVD 231
+ P ++ +++
Sbjct: 216 KFPPEMKSIIE 226
>gi|18309973|ref|NP_561907.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|24212547|sp|Q8XLQ0.1|TRUA1_CLOPE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 248
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 44/256 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQT---SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR I + + Y G Y G+Q Q S+ +T+ L K L K E+ CGRTD
Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMT----SEEIQLIGCGRTD 56
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
SGV A V K S +T ++ +N LP DI+V E++ ARF
Sbjct: 57 SGVHAKNYVANFKTNSLMTLE---------QIIEYINEYLPEDIRVTEIREASERFHARF 107
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ + Y+Y W + LD++AM + A+YL+GTHDF++ + N
Sbjct: 108 NVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKN 167
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+++F++ ++NI I GFL + +R ++ L VG G
Sbjct: 168 -----------KSTLRTINSIEFHE-NNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKI 215
Query: 222 KPEIIQQLVDIEKYPR 237
+P+ I +++ ++ +
Sbjct: 216 EPKYINDILEAKERAK 231
>gi|318079697|ref|ZP_07987029.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actF]
Length = 282
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 37/235 (15%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L + Y G ++HG+ Q T+ L +AL+ + GRTD+GV A Q
Sbjct: 3 LDLSYDGTDFHGWARQPGGRRTVQETLEEALR--VVTRAPAPYELTVAGRTDAGVHARGQ 60
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V + + ++ + E LK L LP+D++V +P PE + ARF ++R Y
Sbjct: 61 VAHVGMADEVWAEHGEK------LLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYA 114
Query: 126 YWFP-QAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
Y QAG LDIDAM++AA+ L+G HDF CK G R
Sbjct: 115 YRVADQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKR--EGATTIRE 172
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ Q + + + E +R+ F + +R ++ L VG G+ P
Sbjct: 173 M----------QQLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPP 217
>gi|302519630|ref|ZP_07271972.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78]
gi|318058099|ref|ZP_07976822.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actG]
gi|302428525|gb|EFL00341.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78]
Length = 284
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 37/235 (15%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L + Y G ++HG+ Q T+ L +AL+ + GRTD+GV A Q
Sbjct: 5 LDLSYDGTDFHGWARQPGGRRTVQETLEEALR--VVTRAPAPYELTVAGRTDAGVHARGQ 62
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V + + ++ + E LK L LP+D++V +P PE + ARF ++R Y
Sbjct: 63 VAHVGMADEVWAEHGEK------LLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYA 116
Query: 126 YWFP-QAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
Y QAG LDIDAM++AA+ L+G HDF CK G R
Sbjct: 117 YRVADQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKR--EGATTIRE 174
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ Q + + + E +R+ F + +R ++ L VG G+ P
Sbjct: 175 M----------QQLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPP 219
>gi|333026542|ref|ZP_08454606.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071]
gi|332746394|gb|EGJ76835.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071]
Length = 284
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 37/235 (15%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L + Y G ++HG+ Q T+ L +AL+ + GRTD+GV A Q
Sbjct: 5 LDLSYDGTDFHGWARQPGGRRTVQETLEEALR--VVTRAPAPYELTVAGRTDAGVHARGQ 62
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V + + ++ + E LK L LP+D++V +P PE + ARF ++R Y
Sbjct: 63 VAHVGMADEVWAEHGEK------LLKRLAGRLPKDVRVWRVAPAPEGFEARFSAIWRRYA 116
Query: 126 YWFP-QAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
Y QAG LDIDAM++AA+ L+G HDF CK G R
Sbjct: 117 YRVADQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKR--EGATTIRE 174
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ Q + + + E +R+ F + +R ++ L VG G+ P
Sbjct: 175 M----------QQLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPP 219
>gi|333913029|ref|YP_004486761.1| tRNA pseudouridine synthase A [Delftia sp. Cs1-4]
gi|333743229|gb|AEF88406.1| tRNA pseudouridine synthase A [Delftia sp. Cs1-4]
Length = 282
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 106/257 (41%), Gaps = 40/257 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y G+Q Q S NTI HL AL + E C GRTD+GV
Sbjct: 3 VALGVAYNGQRYSGWQSQLSG-NTIQDHLEAALGRFAAQEVHTL----CAGRTDAGVHGL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV D +++ N LP DI V PVP+ + +R R
Sbjct: 58 MQVVHFDT---------PLDRAPFSWVRGTNTFLPPDIAVQWAQPVPDAFHSRACATARR 108
Query: 124 YKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y Y Q+ LD DAM AAQ+L+G HDF + C+
Sbjct: 109 YAYVLLQSPVRPSVEAGRVGWVFHALDGDAMQAAAQHLLGEHDFSSFRASGCQAKSPVKT 168
Query: 164 VN----FRRLVTHAGVTSAWQNVQFNDSHHNIC--EFNIRSQGFLWHQIRCIMSVLFLVG 217
++ RR+ +A +++ D+ C F FL H +R IM L +G
Sbjct: 169 LHRLSITRRMAGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIG 228
Query: 218 QGNEKPEIIQQLVDIEK 234
QG P+ +QQ++D
Sbjct: 229 QGAYAPQWMQQVLDARS 245
>gi|168216665|ref|ZP_02642290.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|182381201|gb|EDT78680.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
Length = 244
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 44/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G +Y G+Q Q NTI + +A++K KE+ RTDSGV
Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIG-NTIQQKVEEAIKKVT----KEEVEILGSSRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A V K S + PG+ + LN+ LP+DI ++ V E + AR+
Sbjct: 56 HAKAYVANFKTNSNI--PGKN-------FKAALNSKLPKDIVIMNSEEVAEDFHARYMTT 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y + LD+++M +A +Y +G HDF+ + G V
Sbjct: 107 GKTYCYTILNREEPPALERNYVYHVKKQ-LDVESMKEACKYFLGKHDFKAFQRP--GGTV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R +T + ++ N + + + GFL++ +R I+ L VG+G EKP
Sbjct: 164 KTSVRTITDIHI----------ETEGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKP 213
Query: 224 EIIQQLVD 231
E I++++D
Sbjct: 214 EYIKEVID 221
>gi|110799502|ref|YP_697060.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|168205200|ref|ZP_02631205.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168211871|ref|ZP_02637496.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|110674149|gb|ABG83136.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|170663322|gb|EDT16005.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|170710156|gb|EDT22338.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 244
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 44/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G +Y G+Q Q NTI + +A++K KE+ RTDSGV
Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIG-NTIQQKVEEAIKKVT----KEEVEILGSSRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A V K S + PG+ + LN+ LP+DI ++ V E + AR+
Sbjct: 56 HAKAYVANFKTNSNI--PGKN-------FKAALNSKLPKDIVIMNSEEVAEDFHARYMTT 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y + LD+++M +A +Y +G HDF+ + G V
Sbjct: 107 GKTYCYTILNREEPPALERNYVYHVKKQ-LDVESMKEACKYFLGKHDFKAFQRP--GGTV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R +T + ++ N + + + GFL++ +R I+ L VG+G EKP
Sbjct: 164 KTSVRTITDIHI----------ETEGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKP 213
Query: 224 EIIQQLVD 231
E I++++D
Sbjct: 214 EYIKEVID 221
>gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 44/250 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I ++I Y G NY G+QIQ ++ +I + KAL+K E+ + GRTD+GV
Sbjct: 1 MRNIMIEIEYDGTNYSGWQIQQNAP-SIQEEIAKALKKVT----GEEITTHGSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A QV + ++ SK+ P E LN LPRDI ++ +PE + AR+
Sbjct: 56 HAQGQVASFQLHSKI--PAERISF-------ALNGKLPRDITILEAKEMPEDFHARYSAI 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y P LD+ M +A++ L+GTHDF+ M G+ V
Sbjct: 107 GKRYGYCIMNNTHGSALLRNYCYHVPYK-LDLQKMKQASETLLGTHDFKGF--MASGSQV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R + + F D+ + ++ GFL+ +R I+ L +G G K
Sbjct: 164 KSTVRRI---------DEINF-DTQGSQIWITMQGNGFLYKMVRIIVGSLVGIGTGKIKE 213
Query: 224 EIIQQLVDIE 233
E +Q +++ +
Sbjct: 214 EALQNILETQ 223
>gi|332159317|ref|YP_004424596.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2]
gi|331034780|gb|AEC52592.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2]
Length = 263
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 34/292 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALKI Y G +HGFQ Q + T+ ++KAL + + E S F RTD GVSA
Sbjct: 3 VALKIAYDGTKFHGFQRQPNI-RTVEGEIIKALNNSGI----EYSDFKSASRTDKGVSAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV + + ++E M+ N D+ +++ VP + RF +
Sbjct: 58 GNVVAI------------TTEDEKALNPMVLNARLEDVWILSAIEVPPDFHPRFWAKSKV 105
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL-VTHAGVTSAWQNV 182
Y+Y+ P GLD++ + + +Q +G HDF K++ + + + R+ V G
Sbjct: 106 YRYYLPSIGLDVERVKECSQLFLGVHDFSAFSKVDERDTIRSIDRIEVLVLG-------- 157
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
I I ++ FLW +R I+ L L G G E ++++++ K+ + P
Sbjct: 158 -------PILVIEIEAKSFLWEMVRRIVKALELCGLGKLSAEDVKEMLE-GKFNKSKKVP 209
Query: 243 MVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
E L L +++ + + ++ + +++ E + ++A +L +M+K
Sbjct: 210 PAPPEGLLLVDVKYEGIEFPLNDKALKKFRKEIEERFRQKIMRAYLLWDMMK 261
>gi|395444632|ref|YP_006384885.1| tRNA pseudouridine synthase A [Pseudomonas putida ND6]
gi|388558629|gb|AFK67770.1| tRNA pseudouridine synthase A [Pseudomonas putida ND6]
Length = 286
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 104/241 (43%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 21 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPISVVCAGRTDAGVHGC 76
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 77 GQVVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARR 127
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD+D M +AAQYL+GTHDF C+
Sbjct: 128 YRYVIYNDPIRPAHLAEEVTWNHRP-LDVDRMAEAAQYLLGTHDFSAFRASQCQAK---- 182
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + + H VT H + ++R+ FL H +R I VL +G G E+
Sbjct: 183 --SPIKHIYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAG-ER 229
Query: 223 P 223
P
Sbjct: 230 P 230
>gi|392423926|ref|YP_006464920.1| pseudouridylate synthase I [Desulfosporosinus acidiphilus SJ4]
gi|391353889|gb|AFM39588.1| pseudouridylate synthase I [Desulfosporosinus acidiphilus SJ4]
Length = 262
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 42/248 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQT-SSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
MR I LK+ Y G NYHGFQ Q ++ TI L K ++ L+E EK + A GRTD+G
Sbjct: 1 MRNIRLKVAYDGTNYHGFQRQIETAGPTIQGTLEKVWER--LVE--EKVTIAMAGRTDAG 56
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
V A QVV +++ ++++P K N+ LP+DI+++ VP ++AR+
Sbjct: 57 VHASGQVVNFLTEARIP-------EDKIP--KAFNSLLPKDIRILLAEDVPWDFNARWSA 107
Query: 120 LFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
++ Y Y W L+I +M +AA++L G H+F+ G
Sbjct: 108 TWKRYDYHIDNQRIPEVFTRLYSWHIPVPLNISSMREAAKFLEGRHNFKTFAA--AGGDS 165
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
F R + V + ++ + GFL+H +R I+ L VG+G P
Sbjct: 166 KTFERTLYRCLVR----------ADQDLIRISCVGDGFLYHMVRIIVGTLADVGRGRIMP 215
Query: 224 EIIQQLVD 231
I +++
Sbjct: 216 GEIPGIIE 223
>gi|323499722|ref|ZP_08104688.1| tRNA pseudouridine synthase A [Vibrio sinaloensis DSM 21326]
gi|323315224|gb|EGA68269.1| tRNA pseudouridine synthase A [Vibrio sinaloensis DSM 21326]
Length = 264
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 116/276 (42%), Gaps = 52/276 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q + + +AL+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTQYYGWQRQQEVKS-----VQEALEKALSVVANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + N NLP D+ V VPE + ARF R
Sbjct: 58 GQVVHFDT---------TASRKMVAWTMGANANLPSDVAVRWAKEVPEDFHARFSATARR 108
Query: 124 YKYWFPQAGL----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + L D MH+AAQYL+G +DF +FR
Sbjct: 109 YRYIIFNSALRPGILSSGVSHYHGELDEKKMHQAAQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N+ N + HN +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --ATHCQSRSPWRNMMHINVTRHNQYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
I+ L+ + RK + E L L Y EF+
Sbjct: 215 IEWLLQAKD--RKLAGATAKAEGLYLVDVDYPQEFE 248
>gi|126180241|ref|YP_001048206.1| tRNA pseudouridine synthase ACD [Methanoculleus marisnigri JR1]
gi|166228738|sp|A3CXX4.1|TRUA_METMJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125863035|gb|ABN58224.1| tRNA pseudouridine synthase A [Methanoculleus marisnigri JR1]
Length = 270
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A + Y G + G Q+Q T+ + A + L +D +++FA GRTD GV A
Sbjct: 3 LAFRFSYFGDRFFGSQMQPDL-CTVEGEFIGACRLLRLFDDWREANFATAGRTDRGVHAR 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + LT E + ++ LN LP DI W+ P+ + R+ + R
Sbjct: 62 SQVCSF-----LTDKPERA-------IEALNRVLPADIWCTGWAEAPDGFHPRYSAVSRT 109
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+F G D AMH+AAQ +G HDF + G N R + + V
Sbjct: 110 YRYYFSAPG-DAAAMHEAAQEFLGRHDFSAFARA----GDRNPERRILASRV-------- 156
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
F D + F + + FLW+ +RC+ ++L VG+G + I +L+
Sbjct: 157 FIDGEFAV--FEVTGESFLWNMVRCMATMLGRVGRGEAEAGEIARLL 201
>gi|160900673|ref|YP_001566255.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1]
gi|238687164|sp|A9BNH5.1|TRUA_DELAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|160366257|gb|ABX37870.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1]
Length = 282
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 106/257 (41%), Gaps = 40/257 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y G+Q Q S NTI HL AL + E C GRTD+GV
Sbjct: 3 VALGVAYNGQRYSGWQSQLSG-NTIQDHLEAALGRFAAQEVHTL----CAGRTDAGVHGL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV D +++ N LP DI V PVP+ + +R R
Sbjct: 58 MQVVHFDT---------PLDRAPFSWVRGTNTFLPPDIAVQWAQPVPDAFHSRACATARR 108
Query: 124 YKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y Y Q+ LD DAM AA++L+G HDF + C+
Sbjct: 109 YAYVLLQSPVRPSVEAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVKT 168
Query: 164 VN----FRRLVTHAGVTSAWQNVQFNDSHHNIC--EFNIRSQGFLWHQIRCIMSVLFLVG 217
++ RR+ +A +++ D+ C F FL H +R IM L +G
Sbjct: 169 LHRLSITRRMAGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIG 228
Query: 218 QGNEKPEIIQQLVDIEK 234
QG P+ +QQ++D
Sbjct: 229 QGTYAPQWMQQVLDARS 245
>gi|28212149|ref|NP_783093.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
gi|38258761|sp|Q890R5.1|TRUA2_CLOTE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|28204593|gb|AAO37030.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
Length = 248
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 114/246 (46%), Gaps = 42/246 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
R + LK+ Y G NY G+Q Q + TI + KA+++ KE+ RTD+GV
Sbjct: 3 RNVRLKVEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEAT----KEEVELIGSSRTDAGV 58
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A K S T PGE+ + LN LP DI ++ VP ++ +RFDC+
Sbjct: 59 HALAYTANFKTCS--TIPGEK-------FKHALNRFLPEDIVILESEEVPMEFHSRFDCI 109
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y + + LDI++M +A+++L+GTHDF N K + GN
Sbjct: 110 GKTYVYKILNRPLFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDF-NAFKKSGGNLKT 168
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + N+ S ++I E ++ GFL++ +R I L VG KPE
Sbjct: 169 TVRTIT----------NINILKS-NDIVEIHVSGDGFLYNMVRIISGTLIEVGLSRRKPE 217
Query: 225 IIQQLV 230
I ++
Sbjct: 218 DISIIL 223
>gi|260776454|ref|ZP_05885349.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450]
gi|260607677|gb|EEX33942.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450]
Length = 264
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 107/248 (43%), Gaps = 46/248 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q + + + L++ I C GRTD+GV
Sbjct: 3 IALGIEYNGTHYYGWQRQKEVKS-----VQEKLERALSIVANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + +N NLP DI V VPE++ ARF R
Sbjct: 58 GQVVHFDT---------SASRKMVAWTMGVNANLPNDIAVRWAKEVPEEFHARFSATARR 108
Query: 124 YKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + LD + MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIFNSAFRPGIMSSGVSHYHGELDAEKMHQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ D H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNIMHLDVTRHGQYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEW 214
Query: 226 IQQLVDIE 233
I+ L++++
Sbjct: 215 IKWLLEVK 222
>gi|253577209|ref|ZP_04854529.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843453|gb|EES71481.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786
str. D14]
Length = 261
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 115/277 (41%), Gaps = 42/277 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + + + Y G NY GFQ Q NT+ H+ A+++ E GRTD+GV
Sbjct: 1 MRNLLMTVSYDGTNYFGFQTQPGG-NTVQDHIEGAIRQLT----GETVKIHGSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLK---MLNNNLPRDIKVVAWSPVPEKYSARF 117
A Q P D+ +P + LN LP DI+V+ VP + +R
Sbjct: 56 HARQQ------------PFHFHTDSRIPVERWCLALNARLPSDIRVLTAREVPLTFHSRH 103
Query: 118 -----------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 160
D RNY++ P L++DAM + YLVGTHDF +
Sbjct: 104 SAKRKTYRYTINTNRFPDVFQRNYQFHHP-GQLNVDAMQASLPYLVGTHDFTSFASRQ-S 161
Query: 161 NGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ + R + V + + + I F + GFL H +R I+ L +G+G
Sbjct: 162 TKLSHVRTIYDARIVVDSLAKIP-GTTGQGIVHFYVTGSGFLQHMVRIIVGTLIEIGEGK 220
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
PE IQ + +E R P + L L+ E++
Sbjct: 221 RTPESIQAI--LEAKDRTAAGPTAESKGLMLWSVEYE 255
>gi|397781563|ref|YP_006546036.1| tRNA pseudouridine synthase A [Methanoculleus bourgensis MS2]
gi|396940065|emb|CCJ37320.1| tRNA pseudouridine synthase A [Methanoculleus bourgensis MS2]
Length = 268
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 106/239 (44%), Gaps = 27/239 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A++ Y G + G Q+Q T+ + A ++ L ED ++ F GRTD GV A
Sbjct: 3 LAIRFSYFGDRFFGSQMQPGL-RTVEGEFIAACRRLGLFEDWREAGFVTAGRTDRGVHAR 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
CQV + E D + + LN LP DI AW+ VP+++ R+ + R
Sbjct: 62 CQVCSFFT---------EKPDRAI---RSLNRVLPEDIWCTAWAGVPDRFHPRYSAMSRT 109
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+F ++ MH+AA VG HDF + G + R V A V ++N
Sbjct: 110 YRYFFFPVPGNVALMHEAAGEFVGRHDFSAFARA----GGRDPERNVLSARV---FENGP 162
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
F F + FLW+ +R + + L VG+G I +L+ R P P
Sbjct: 163 F-------AVFEVTGVSFLWNMVRGMATALERVGRGEADVGDIARLLAEPPGRRLPAAP 214
>gi|441506129|ref|ZP_20988106.1| tRNA pseudouridine synthase A [Photobacterium sp. AK15]
gi|441426268|gb|ELR63753.1| tRNA pseudouridine synthase A [Photobacterium sp. AK15]
Length = 261
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 113/271 (41%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G Y+G+Q Q D ++ L KAL K + C GRTDSGV
Sbjct: 3 IALGVEYDGAKYYGWQRQREVD-SVQERLEKALTKIA----NKPVEVQCAGRTDSGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + + +N LP+DI V V E + ARF R
Sbjct: 58 GQVVHFDV---------DVNRKMAAWTMGVNAQLPKDIAVRWAKEVSEDFHARFSATARR 108
Query: 124 YKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD + MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIYNHALRPAILSTGVSHYHGELDTEKMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ N S N +I++ F+ H +R I L VG+G EKPE
Sbjct: 157 --AVHCQSLSPWRNLMHLNVSRQGNFVIIDIKANAFVHHMVRNITGSLIKVGRGEEKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E+ R + E L L ++
Sbjct: 215 IQWL--LEQKDRTLAGATAKAEGLYLVDVDY 243
>gi|403382898|ref|ZP_10924955.1| tRNA pseudouridine synthase A [Paenibacillus sp. JC66]
Length = 259
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 119/272 (43%), Gaps = 35/272 (12%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L + Y G Y GFQIQ + NT+ L +A+ K SS GRTD+GV
Sbjct: 7 RNIKLTVSYDGTQYSGFQIQPQA-NTVQGELERAVFHLTGQSVKLTSS----GRTDAGVH 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A CQVV ++ S + P + + LN+ LP+DI V VP ++ AR +
Sbjct: 62 ARCQVVNFEVNSSI--PIDR-------WCLALNSRLPKDIVVHTAEEVPMEFHARRSAVS 112
Query: 122 RNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y+Y ++ L + AM KA + L GTHDF C VV+
Sbjct: 113 KTYRYSIQRSKWANVMYRDSRLHHPGSLSLSAMEKALKQLEGTHDFTTFCSRRAA--VVS 170
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R + + + + D + I+ GFL++ +R I+ L +G+G +PE
Sbjct: 171 HVRTIYSTSIVFEAEPM-LGDGDAGVIHIYIQGNGFLYNMVRIIVGTLLQIGEGRRQPEE 229
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+ ++ + R P L L+ +++
Sbjct: 230 MGIILSAKN--RSLAGPTALAHALTLWDVQYE 259
>gi|110802389|ref|YP_699630.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110682890|gb|ABG86260.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 244
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 114/248 (45%), Gaps = 44/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G +Y G+Q Q NTI + +A++K KE+ RTDSGV
Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIG-NTIQQKVEEAIKKVT----KEEVEILGSSRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A V K S + PG+ + LN+ LP+DI ++ V E + AR+
Sbjct: 56 HAKAYVANFKTNSNI--PGKN-------FKAALNSKLPKDIVIMNSEEVAEDFHARYMTT 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y + LD+++M +A +Y +G HDF+ + G V
Sbjct: 107 GKTYCYTILNREEPPALERNYVYHVKKQ-LDVESMKEACKYFLGKHDFKAFQRP--GGTV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R +T + + N + + + GFL++ +R I+ L VG+G EKP
Sbjct: 164 KTSVRTITDIHI----------EIEGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKP 213
Query: 224 EIIQQLVD 231
E I++++D
Sbjct: 214 EYIKEVID 221
>gi|261252353|ref|ZP_05944926.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417956100|ref|ZP_12599097.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260935744|gb|EEX91733.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342811425|gb|EGU46467.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 264
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 121/286 (42%), Gaps = 54/286 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q + + + L++ + + C GRTD+GV
Sbjct: 3 IALGIEYNGTQYYGWQRQREVKS-----VQEKLERALSVVANQPIEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + N NLP DI V VPE++ ARF R
Sbjct: 58 GQVVHFDT---------TATRKMVAWTMGANANLPDDIAVRWAKEVPEEFHARFSATARR 108
Query: 124 YKYWFPQAGL----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + L D MH+AAQYL+G +DF +FR
Sbjct: 109 YRYIIFNSALRPGILSSGVSHYHGELDEKKMHQAAQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N+ N + HN +I++ F+ H +R I L VG+G ++PE
Sbjct: 157 --ATHCQSRSPWRNMMHINVTRHNQYVVIDIKANAFVHHMVRNITGSLICVGRGEQQPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHV 271
I +L+ ++ RK + E L L ++ DE E+ V
Sbjct: 215 IAELLAVKD--RKLAGATAKAEGLYLVDVDYP------DEFELPRV 252
>gi|397693259|ref|YP_006531139.1| tRNA pseudouridine synthase A [Pseudomonas putida DOT-T1E]
gi|397329989|gb|AFO46348.1| tRNA pseudouridine synthase A [Pseudomonas putida DOT-T1E]
Length = 284
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 104/241 (43%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPISVVCAGRTDAGVHGC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 75 GQVVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD+D M +AAQ+L+GTHDF C+
Sbjct: 126 YRYVIYNDPIRPAHLAEEVTWNHRP-LDVDRMAEAAQFLLGTHDFSAFRASQCQAK---- 180
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + V H VT H + ++R+ FL H +R I VL +G G E+
Sbjct: 181 --SPIKHVYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAG-ER 227
Query: 223 P 223
P
Sbjct: 228 P 228
>gi|147919589|ref|YP_686671.1| tRNA pseudouridine synthase A [Methanocella arvoryzae MRE50]
gi|121687867|sp|Q0W2P8.1|TRUA_UNCMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|110622067|emb|CAJ37345.1| tRNA pseudouridine synthase [Methanocella arvoryzae MRE50]
Length = 266
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 117/262 (44%), Gaps = 32/262 (12%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFC 64
ALKI Y G N++G Q Q T+ L KAL++ I K + A GRTD+GV A
Sbjct: 4 ALKIAYVGTNFYGSQAQPGLP-TVESELRKALEEAGAI--KLGTKIAMAGRTDAGVHALG 60
Query: 65 QVVTL-KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + KLT+P +++N+ LP+D+ A + VP+ + R R
Sbjct: 61 QVVAFEQADPKLTAP------------RIINSKLPKDLWAYARAEVPDDFDPRRHATSRE 108
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y + + + + +GTHDF N + G V R VT +
Sbjct: 109 YRYILYAPDVIERRLKECSSRFLGTHDFTNFSSVEAGKYPV---RTVTRLDIA------- 158
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ +I + FLW+ +R I++ L LVG+ I+++ D E R+ + P
Sbjct: 159 ---KRGDFYIIDIEADSFLWNMVRKIVTALRLVGENKRPDGWIEKMFDPEY--REGIPPA 213
Query: 244 VRGEPLNLYHTEFDNLTWHYDE 265
G L L +D + + DE
Sbjct: 214 APGG-LYLSRVNYDGIAFEEDE 234
>gi|149189278|ref|ZP_01867564.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1]
gi|148836837|gb|EDL53788.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1]
Length = 267
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 120/271 (44%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G NY+G+Q Q + + + L+K I + C GRTD+GV
Sbjct: 3 VALGIEYNGANYYGWQRQRDVSS-----VQEELEKALSIVANQPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + S + P + +N NLP+DI V V E++ ARF R
Sbjct: 58 GQVVHFE-SSVIRKPAA--------WTMGVNANLPKDIAVRWAKEVHEEFHARFSATARR 108
Query: 124 YKY-WFPQA---------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y F A LD + MH+A QYL+G +DF +FR
Sbjct: 109 YRYVIFNHALRPGILSSGISHYHGELDAEKMHQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ N S H +I++ F+ H +R I L +VG+G++ PE
Sbjct: 157 --AVHCQSRSPWRNIMHLNVSRHGPYVVIDIKANAFVHHMVRNITGSLIVVGKGDQSPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L +++ RK + E L L ++
Sbjct: 215 IEWL--LQQKDRKLAGATAKAEGLYLVDVDY 243
>gi|406835551|ref|ZP_11095145.1| tRNA pseudouridine synthase A [Schlesneria paludicola DSM 18645]
Length = 316
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 122/266 (45%), Gaps = 57/266 (21%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIE-DKEKSSFACCGRTDSGVSAFC 64
+ + Y G NY G+QIQ + + L+++ + L + +E GRTD+GV A
Sbjct: 45 MTVAYDGTNYCGWQIQPNGVS------LQSVVEEALTQFTREPIKAVASGRTDAGVHALG 98
Query: 65 QVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNY 124
QVV+ S T+P +L L LP +I V P PE ++AR+D + Y
Sbjct: 99 QVVSFSTTS--TAPSHA-------FLHGLAQYLPDEIVVRDVQPAPEGFNARYDAQRKWY 149
Query: 125 KY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
+Y + ++ LD DAMH A QYLVGTHDFR C + + R
Sbjct: 150 RYVIHNSVIRRPFLRNAVLWQRSRLDHDAMHAAVQYLVGTHDFR--CFESNWPNRSSSVR 207
Query: 169 LVTHAGVTSA-----WQNVQFN------------------DSHHNICEFNIRSQGFLWHQ 205
+ HA V+ A W+++ D + F++++ GFL++
Sbjct: 208 TIMHASVSRAAGWDVWEDLAPTVPGEPRQASGPVASATPADVEPSFVCFDVQADGFLYNM 267
Query: 206 IRCIMSVLFLVGQGNEKPEIIQQLVD 231
+R I+ L VG+G PE ++++++
Sbjct: 268 VRAIVGTLIHVGRGRWTPEDMRRILE 293
>gi|295698698|ref|YP_003603353.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA]
gi|291157129|gb|ADD79574.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA]
Length = 255
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 127/272 (46%), Gaps = 48/272 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G YHG+Q Q + ++I L +L+K + D++ ++ C GRTDSGV AF
Sbjct: 5 VALGIQYDGSRYHGWQKQKNGLDSIQKRLESSLKK---LTDEDIKTY-CGGRTDSGVHAF 60
Query: 64 CQVV---TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV T KIR ++ ++ +N+ LP+DI V+ PV ++ ARF +
Sbjct: 61 GQVVHFETYKIRK------------DVVWVSGVNHFLPKDISVLWVKPVSHRFHARFSAI 108
Query: 121 FRNYKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R+Y+Y LD M+KAAQ L+G +D + +
Sbjct: 109 SRHYRYLIFNKEIRPAIFRSNVLHISKKLDYKDMNKAAQCLLGENDLISFISFD------ 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
RR + NV+ DS+ +I + F ++ +R I+ L VG G + E
Sbjct: 163 --RRSFRSTKRNIRYINVKRFDSY---VIIDIVANSFAYNMVRNIVGSLIEVGLGKKGTE 217
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I++L+D++ R P V + L L H +
Sbjct: 218 WIKKLIDLK--DRTKSGPKVHSKGLYLMHINY 247
>gi|329767334|ref|ZP_08258859.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
gi|328836023|gb|EGF85714.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
Length = 265
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 122/273 (44%), Gaps = 45/273 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL Y G NYHGFQIQ ++NTI + K+L+K +K+ GRTDSGV A+
Sbjct: 3 IALLCRYDGSNYHGFQIQ-PNNNTIQEEIEKSLKKI----NKKDVRLYMSGRTDSGVHAY 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV L + L P ++ ++K LN +P+DI++V + V E + R++ +
Sbjct: 58 GQV--LHFDTDLNIP-------DVAWVKALNATIPKDIRIVGATTVSEDFHVRYNSTQKT 108
Query: 124 YKYWFPQAGLDIDAM-----------------HKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y+ G +ID ++ +Y +G HDF + C N
Sbjct: 109 Y-YYKLYIGREIDPFLLNYVGKHSFDFNFEKAQESLKYFIGEHDFSSFCSKNSS------ 161
Query: 167 RRLVTHAGVTSAWQNVQFNDS-HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
V + + D + NI F I GFL++ +R I+ + V G + +
Sbjct: 162 ----VEDKVRTIYSLTMGKDPINPNIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEADY 217
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
I++++D K R+ P L L +D+
Sbjct: 218 IKEILD--KKERQFAGPKADAAGLYLKEVVYDD 248
>gi|262171995|ref|ZP_06039673.1| tRNA pseudouridine synthase A [Vibrio mimicus MB-451]
gi|261893071|gb|EEY39057.1| tRNA pseudouridine synthase A [Vibrio mimicus MB-451]
Length = 264
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 116/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+D+ V + VP+ + ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDVAVRWATAVPDDFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLITVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E+ R + E L L ++
Sbjct: 215 IQWL--LEQKNRTLAAATAKAEGLYLVEVDY 243
>gi|421522277|ref|ZP_15968919.1| tRNA pseudouridine synthase A [Pseudomonas putida LS46]
gi|402753896|gb|EJX14388.1| tRNA pseudouridine synthase A [Pseudomonas putida LS46]
Length = 284
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 104/241 (43%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPISVVCAGRTDAGVHGC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 75 GQVVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD+D M +AAQ+L+GTHDF C+
Sbjct: 126 YRYVIYNDPIRPAHLAEEVTWNHRP-LDVDRMAEAAQFLLGTHDFSAFRASQCQAK---- 180
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + + H VT H + ++R+ FL H +R I VL +G G E+
Sbjct: 181 --SPIKHIYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAG-ER 227
Query: 223 P 223
P
Sbjct: 228 P 228
>gi|167036834|ref|YP_001664412.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167039553|ref|YP_001662538.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|256752665|ref|ZP_05493517.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300915196|ref|ZP_07132511.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307725120|ref|YP_003904871.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|320115256|ref|YP_004185415.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|238687621|sp|B0K5S6.1|TRUA_THEPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238687718|sp|B0KCN3.1|TRUA_THEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166853793|gb|ABY92202.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|166855668|gb|ABY94076.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748485|gb|EEU61537.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300888920|gb|EFK84067.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307582181|gb|ADN55580.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|319928347|gb|ADV79032.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 244
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 111/240 (46%), Gaps = 42/240 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + + + Y G NYHG+Q Q ++ T+ L KA++K E+ + RTD+GV
Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNA-VTVQEVLQKAIKKVT----GEEVNLIGASRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +K+ P E+ LPY LN+ LP DI VV V + + AR+
Sbjct: 56 HALYQVANFKTNTKI--PAEK-----LPY--ALNSVLPDDIVVVQAKDVEDSFHARYSAK 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ YKY W L+I+ M KAA YL+GTHDF +G
Sbjct: 107 RKRYKYIILNRKFQMPTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFK----ASGSS 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ T +T ++ N+ NI I + GFL++ +R I+ L VG G K +
Sbjct: 163 KTSTIRTVYDLT-----IEKNEDFINI---EIEANGFLYNMVRIIVGTLSYVGLGKIKED 214
>gi|300710278|ref|YP_003736092.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|448294604|ref|ZP_21484683.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|299123961|gb|ADJ14300.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|445586281|gb|ELY40563.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
Length = 266
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 29/253 (11%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFC 64
A +I Y G Y+GFQ Q + T+ L AL + E ++ + +A GRTD GVSA
Sbjct: 3 AFRIAYDGAPYYGFQRQPDVE-TVEGVLFDALDRLVTFEGEKPAGYAAAGRTDRGVSALA 61
Query: 65 QVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNY 124
Q V + LT N+ LP ++ A + P+ + AR+D R Y
Sbjct: 62 QTVAFEAPEWLTP-------------AAFNSELPGTVRAWASADAPDDFHARYDARSRTY 108
Query: 125 KYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQF 184
Y+ G D++A+ L GTHDF NL + T +T A N +
Sbjct: 109 AYYLHAPGADVEAIRGVLSRLSGTHDFHNLTPEDG----------PTTRTITRARANRE- 157
Query: 185 NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMV 244
+R+ GFL +R +++++ V + P +++++ E+
Sbjct: 158 ----GPFVVLTLRADGFLKRLVRRVVTLVVDVLRSERDPTYVERVLSKERLSGPEGIASA 213
Query: 245 RGEPLNLYHTEFD 257
EPL L HT +D
Sbjct: 214 PSEPLVLVHTAYD 226
>gi|389576424|ref|ZP_10166452.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
gi|389311909|gb|EIM56842.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
Length = 271
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 34/247 (13%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ I L I Y G NY GFQ+Q + T+ + +A+ + E+ RTD+GV
Sbjct: 4 MKRIMLIIAYDGTNYCGFQVQPNG-VTVQELVNRAVSELT----GEEIRTIGASRTDAGV 58
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A VV ++++ PG++ Y LN LP DIKV V + R+
Sbjct: 59 HARGNVVVFDTKARM--PGDK-------YSYALNPRLPDDIKVQLSREVSPDFHPRYTDT 109
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y F LD D M AA+YL GTHDFR+ N
Sbjct: 110 VKTYEYRILNRRMPDPTRRLNTLFNYFSLDADRMQAAARYLEGTHDFRSFQASGETNPDK 169
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + A VT D + ++ F I GFL++ +R + L +G+G +PE
Sbjct: 170 ETVRTIYSASVTRG----NAADGNEDLITFRITGNGFLYNMVRILAGTLIEIGRGKLEPE 225
Query: 225 IIQQLVD 231
+++++D
Sbjct: 226 DMKKIMD 232
>gi|169347102|ref|ZP_02866044.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|169296785|gb|EDS78914.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
Length = 244
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 42/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G +Y G+Q Q NTI + +A++K KE+ RTDSGV
Sbjct: 1 MRNIKLIIEYDGTSYFGWQKQPIG-NTIQQKVEEAIKKVT----KEEVEILGSSRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V K S + PG+ + LN+ LP+DI ++ V E + AR+
Sbjct: 56 HAKAYVANFKTNSNI--PGKN-------FKAALNSKLPKDIVIMNSEEVAEDFHARYMTT 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y + + LD+++M +A +Y +G HDF+ G V
Sbjct: 107 GKTYCYTILNREEPPALERNCVYHVKKQLDVESMKEACKYFLGKHDFKAF--QRPGGTVK 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R +T + ++ N + + + GFL++ +R I+ L VG+G EKPE
Sbjct: 165 TSVRTITDIHI----------ETEGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPE 214
Query: 225 IIQQLVD 231
I++++D
Sbjct: 215 YIKEVID 221
>gi|262165233|ref|ZP_06032970.1| tRNA pseudouridine synthase A [Vibrio mimicus VM223]
gi|262024949|gb|EEY43617.1| tRNA pseudouridine synthase A [Vibrio mimicus VM223]
Length = 264
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 116/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPIEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+D+ V + VP+ + ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDVAVRWATAVPDDFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E+ R + E L L ++
Sbjct: 215 IQWL--LEQKNRTLAAATAKAEGLYLVEVDY 243
>gi|134298133|ref|YP_001111629.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1]
gi|172044244|sp|A4J151.1|TRUA_DESRM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|134050833|gb|ABO48804.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1]
Length = 247
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 110/248 (44%), Gaps = 41/248 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
M+ I L + Y G NYHGFQ Q + TI L KAL + GRTD+G
Sbjct: 1 MKNIKLTLAYDGTNYHGFQEQRGTGLATIQEALEKALSTIA----QTPIQVIGAGRTDAG 56
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
V A QVV + K P E++ LN LP DIKVV VP + ARF
Sbjct: 57 VHAQGQVVNFR-SEKWPVPAEKAP-------LALNVLLPGDIKVVKAEEVPMDFHARFSA 108
Query: 120 LFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ + Y+Y + LD++AM + A YL+GT+DF++ G V
Sbjct: 109 VAKTYRYSIYHHRVMSPFHRYYCYHEPRRLDVNAMQEGAAYLLGTYDFKSFQAQ--GTPV 166
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R + A + D+ + +R GFL++ +R I L +G G KP
Sbjct: 167 KDTIRTIYRADI--------IEDA--PVINLYLRGNGFLYNMVRIITGTLLNIGFGKIKP 216
Query: 224 EIIQQLVD 231
E + ++++
Sbjct: 217 EDMVKIIE 224
>gi|21223110|ref|NP_628889.1| tRNA pseudouridine synthase A [Streptomyces coelicolor A3(2)]
gi|289769686|ref|ZP_06529064.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24]
gi|8134769|sp|O86776.1|TRUA_STRCO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3449243|emb|CAA20387.1| putative pseudouridylate synthase [Streptomyces coelicolor A3(2)]
gi|289699885|gb|EFD67314.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24]
Length = 284
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 100/241 (41%), Gaps = 43/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL+ + +E GRTD+GV A
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALR--TVTRSRETYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E ++ + LK L LPRD++V A P ++ARF ++R
Sbjct: 70 GQVAHVDL------PREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM+ AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNAAARGLLGEHDFAAYCKKR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + I +R+ F + +R ++ L VG G+ P
Sbjct: 179 TTIRTL----------QELSLVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGP 228
Query: 224 E 224
E
Sbjct: 229 E 229
>gi|417824106|ref|ZP_12470697.1| tRNA pseudouridine synthase A [Vibrio cholerae HE48]
gi|340047791|gb|EGR08714.1| tRNA pseudouridine synthase A [Vibrio cholerae HE48]
Length = 264
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 107/245 (43%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +K + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDTSAK---------RQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
Length = 244
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 108/247 (43%), Gaps = 44/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M I + Y+G Y GFQ Q TI L A+ K E+ GRTD+GV
Sbjct: 1 MNRIKALVEYEGTRYSGFQRQPRG-LTIEGELEAAICKLT----GERVKVLAAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A QV+ S + P E + LN+ LP DI+V+ E + R+
Sbjct: 56 HALGQVIAFDTESPI--PPER-------FAPALNSVLPSDIRVLKSEKAKEGFHPRYQAR 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+RN Y++PQ LD+ AM KAA+Y+ GTHDF C G+GV
Sbjct: 107 AKAYRYLIYRQEEGRTFYRNLAYYYPQP-LDLPAMAKAARYMEGTHDFMAFCAS--GSGV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
N+ R V + +Q ++C GFL++ +R ++ L VG+ P
Sbjct: 164 RNYVRTVFEVSINEKPPFLQI-----DVC-----GDGFLYNMVRIMVGTLLEVGRKRLAP 213
Query: 224 EIIQQLV 230
E ++Q++
Sbjct: 214 EEVEQIL 220
>gi|124486487|ref|YP_001031103.1| tRNA pseudouridine synthase ACD [Methanocorpusculum labreanum Z]
gi|166228737|sp|A2SU30.1|TRUA_METLZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|124364028|gb|ABN07836.1| tRNA pseudouridine synthase A [Methanocorpusculum labreanum Z]
Length = 281
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 26/227 (11%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A Y+G N+ G Q Q T+ + + L D +++ F GRTD GVSA
Sbjct: 3 LAFLAGYRGQNFAGSQYQPHK-RTVEGEFVAGGIELGLFSDAKEAHFRTAGRTDKGVSAR 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+ ++ ++ EL ++ LN +LP DI + + V E++ R+ R+
Sbjct: 62 RQLFSIT-----------TEKPELA-IEALNFHLPDDIWCIGAAEVDEEFYPRYAARERS 109
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+FP D+ M AA L+GTH+F KM G V R VT A V
Sbjct: 110 YRYYFPYPA-DVSRMQDAASRLIGTHNFSGFAKMEAGRDPV---RTVTRAEVF------- 158
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
+ F + ++ FLW+ +R + L +G G +P++I++L+
Sbjct: 159 --EGKDGCPVFEVAAKSFLWNMVRGMAGALQTIGLGLCEPDVIEELL 203
>gi|336430072|ref|ZP_08610028.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336001243|gb|EGN31388.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 256
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 112/270 (41%), Gaps = 53/270 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQ----------TSSDNTIAHHLLKALQKTCLIEDKEKSSF 50
MR + + Y+G Y G+Q Q S +NTI L + L + +
Sbjct: 1 MRNFKIVLQYEGTRYKGWQKQGKGEGDSSSSASPENTIQGKLERLLSRIA----GKPVEI 56
Query: 51 ACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP 110
GRTD+GV A+ QV + ++DD ++ +N+ LP DI V++ VP
Sbjct: 57 QGSGRTDAGVHAYGQVANFHM---------DTDDTSEALMEKINSYLPEDIGVISVEEVP 107
Query: 111 EKYSARFDCLFRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNL 154
E++ +R + + Y+Y + LD++AM +AA L G+HDF+
Sbjct: 108 ERFHSRLNAKSKTYRYRVLNSAVPHIFERRYVYQVPEHLDMEAMRRAAILLTGSHDFKAF 167
Query: 155 CKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLF 214
G ++Q + I F GFL+H +R +M L
Sbjct: 168 TSAKKGK-----------KSTVRTVDSIQIDRVGEEI-HFTFSGNGFLYHMVRILMGTLL 215
Query: 215 LVGQGNEKPEIIQQLVDIEKYPRKPVYPMV 244
VG G +KPE + + +E R+ P+V
Sbjct: 216 EVGTGAKKPEDMTAI--LESGSRECAGPLV 243
>gi|424659768|ref|ZP_18097017.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-16]
gi|408051455|gb|EKG86542.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-16]
Length = 264
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 107/245 (43%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +K + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDTTAK---------RQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|386013194|ref|YP_005931471.1| TruA [Pseudomonas putida BIRD-1]
gi|313499900|gb|ADR61266.1| TruA [Pseudomonas putida BIRD-1]
Length = 284
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 104/241 (43%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPISVICAGRTDAGVHGC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 75 GQVVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD+D M +AAQ+L+GTHDF C+
Sbjct: 126 YRYVIYNDPIRPAHLAEEVTWNHRP-LDVDRMAEAAQFLLGTHDFSAFRASQCQAK---- 180
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + + H VT H + ++R+ FL H +R I VL +G G E+
Sbjct: 181 --SPIKHIYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAG-ER 227
Query: 223 P 223
P
Sbjct: 228 P 228
>gi|258622013|ref|ZP_05717042.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573]
gi|424808088|ref|ZP_18233490.1| tRNA pseudouridine synthase A [Vibrio mimicus SX-4]
gi|258585766|gb|EEW10486.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573]
gi|342324625|gb|EGU20406.1| tRNA pseudouridine synthase A [Vibrio mimicus SX-4]
Length = 264
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 116/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+D+ V + VP+ + ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDVAVRWATAVPDDFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNIMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E+ R + E L L ++
Sbjct: 215 IQWL--LEQKNRTLAAATAKAEGLYLVEVDY 243
>gi|420155408|ref|ZP_14662270.1| tRNA pseudouridine(38-40) synthase [Clostridium sp. MSTE9]
gi|394759186|gb|EJF41965.1| tRNA pseudouridine(38-40) synthase [Clostridium sp. MSTE9]
Length = 251
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 47/250 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I I Y G YHG+Q+Q ++ + LQ + D + C RTD+GV
Sbjct: 1 MRNILFNISYDGSAYHGWQVQNNAISVQEVFQQAMLQVVGCVPDVKA-----CSRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A ++ KI + P E +N+ LP D+ V++ VP + AR+ C
Sbjct: 56 HARQFCISAKIERNI--PCER-------LTPAMNHFLPPDVAVLSCREVPMDFHARYSCR 106
Query: 121 FRNY-------------------KYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ Y YW+P +D++ +++AA + +GTHDF + C ++ +
Sbjct: 107 GKEYVYQIWNAPVRDPFLYGYALHYWYP---MDLEKLNRAAAHYLGTHDFTSFCTIDARD 163
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
N R VT A V+ ++ F + + GFL+H +R + L V QG
Sbjct: 164 AG-NMVRTVTKAEVSR----------EGDMVRFTVAANGFLYHMVRIMAGTLLRVAQGKF 212
Query: 222 KPEIIQQLVD 231
+PE I Q+++
Sbjct: 213 EPEQIPQILE 222
>gi|148548973|ref|YP_001269075.1| tRNA pseudouridine synthase A [Pseudomonas putida F1]
gi|148513031|gb|ABQ79891.1| tRNA pseudouridine synthase A [Pseudomonas putida F1]
Length = 332
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 104/241 (43%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 67 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPISVVCAGRTDAGVHGC 122
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 123 GQVVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARR 173
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD+D M +AAQ+L+GTHDF C+
Sbjct: 174 YRYVIYNDPIRPAHLAEEVTWNHRP-LDVDRMAEAAQFLLGTHDFSAFRASQCQAK---- 228
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + + H VT H + ++R+ FL H +R I VL +G G E+
Sbjct: 229 --SPIKHIYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAG-ER 275
Query: 223 P 223
P
Sbjct: 276 P 276
>gi|258627102|ref|ZP_05721898.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603]
gi|258580620|gb|EEW05573.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603]
Length = 264
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 116/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+D+ V + VP+ + ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDVAVRWATAVPDDFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNIMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E+ R + E L L ++
Sbjct: 215 IQWL--LEQKNRTLAAATAKAEGLYLVEVDY 243
>gi|365089538|ref|ZP_09328311.1| tRNA pseudouridine synthase A [Acidovorax sp. NO-1]
gi|363416668|gb|EHL23769.1| tRNA pseudouridine synthase A [Acidovorax sp. NO-1]
Length = 273
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 107/249 (42%), Gaps = 36/249 (14%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +AL + Y G Y G+Q Q S NTI L AL + S C GRTD+GV
Sbjct: 1 MTRVALGVSYNGQAYSGWQSQLSG-NTIQDKLEAALGRFA----THPVSTLCAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV + L P +++ N LP DI V PVP+ + AR +
Sbjct: 56 HGLMQVVHFD--THLNRPASS-------WVRGTNTFLPADIAVQWAQPVPDGFHARASAV 106
Query: 121 FRNYKYWFPQ--------AG--------LDIDAMHKAAQYLVGTHDFRNL--CKMNVGNG 162
R Y Y Q AG LD AM +AA YL+G HDF +
Sbjct: 107 ARRYSYVLLQSPVRPSVDAGRVGWVFHPLDHQAMRQAAHYLLGEHDFTSFRASACQAKTP 166
Query: 163 VVNFRRL-VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V +R+ +T G+ + ++ + F + FL H IR IM L VGQGN+
Sbjct: 167 VKTLQRIDITRRGMGEPHPELGWSPCY---WRFEFEANAFLHHMIRNIMGCLIAVGQGNQ 223
Query: 222 KPEIIQQLV 230
PE I Q++
Sbjct: 224 PPEWIAQVL 232
>gi|449145725|ref|ZP_21776525.1| tRNA pseudouridine synthase A [Vibrio mimicus CAIM 602]
gi|449078591|gb|EMB49525.1| tRNA pseudouridine synthase A [Vibrio mimicus CAIM 602]
Length = 264
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 116/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+D+ V + VP+ + ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDVAVRWATAVPDDFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNIMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E+ R + E L L ++
Sbjct: 215 IQWL--LEQKNRTLAAATAKAEGLYLVEVDY 243
>gi|410722308|ref|ZP_11361613.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
gi|410597279|gb|EKQ51909.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
Length = 274
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 33/237 (13%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +ALK+ Y G +++GFQ Q + T+ L+ AL+K+ I + +S+++ GRTD GV
Sbjct: 1 MIRVALKVAYLGTDFYGFQRQPNL-RTVEGELISALKKSGAISNLGQSNYSIAGRTDRGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A VV+ LT D E P + +N+ LP DI+++ VP + R+
Sbjct: 60 HALGNVVSF-----LT-------DKE-PIINQVNDLLPMDIRILGSCRVPLGFKTRY-AH 105
Query: 121 FRNYKYWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
R+Y+Y + D+D M AA + GTH+F N + N N + R V T
Sbjct: 106 KRHYRYVLCRKVGEDEWDVDKMQGAAHLMEGTHNFLNFSRRNERNPM----RKVDSVRFT 161
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
S Q +C ++ + FLW+ +R +M+VL VG+ E +++ D E
Sbjct: 162 SKNQ----------VCLVDVEGESFLWNMVRKMMTVLISVGKHEMGIEDVKKCFDPE 208
>gi|261211961|ref|ZP_05926247.1| tRNA pseudouridine synthase A [Vibrio sp. RC341]
gi|260838569|gb|EEX65220.1| tRNA pseudouridine synthase A [Vibrio sp. RC341]
Length = 264
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 116/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V S VP+ + ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDIAVRWASSVPDDFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHCELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNLMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E+ R + E L L ++
Sbjct: 215 IQWL--LEQKNRTLAAATAKAEGLYLVEVDY 243
>gi|145356339|ref|XP_001422390.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582632|gb|ABP00707.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 286
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 113/260 (43%), Gaps = 32/260 (12%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFC 64
ALKI Y G Y+GFQ Q TI L +AL K I D+E+ GRTD+GV A
Sbjct: 19 ALKISYDGERYNGFQYQGEDVPTIQRELERALAKLTGI-DRERLRLGAAGRTDAGVHARG 77
Query: 65 QVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVA-WSPVPEKYSARFDCLFRN 123
QV L GE+ + K +N LP+DI+V A W P P + +RF +
Sbjct: 78 QVAHFYCEKSL---GEDLTRCQ----KAMNGMLPKDIRVDAFWEPHP-LFHSRFHASGKT 129
Query: 124 YKYWFP--------------QAG---LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y+ Q G D++ + +AAQ VGT D++ C N N
Sbjct: 130 YHYYVDARATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFC--NTSRDKSNE 187
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
R T T +V + + + + GFL+ Q+R ++ L +V G +
Sbjct: 188 DRNTTR---TIRRFDVFEDAADDGLIRLEVEGDGFLYRQVRNMVGALLVVASGKHDLAYL 244
Query: 227 QQLVDIEKYPRKPVYPMVRG 246
+ L++ + R P+ RG
Sbjct: 245 RTLIETKDRSRAPMGAPARG 264
>gi|339486508|ref|YP_004701036.1| tRNA pseudouridine synthase A [Pseudomonas putida S16]
gi|338837351|gb|AEJ12156.1| tRNA pseudouridine synthase A [Pseudomonas putida S16]
Length = 284
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPISVICAGRTDAGVHGC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+V R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 75 GQIVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWARPMPADFHARFKACARR 125
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + LD++ M +AAQYL+GTHDF C+
Sbjct: 126 YRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAEAAQYLLGTHDFSAFRASQCQAK----- 180
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ + + H VT H + ++R+ FL H +R I VL +G G E+P
Sbjct: 181 -SPIKHIYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMTIGAG-ERP 228
>gi|241890020|ref|ZP_04777318.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
gi|241863642|gb|EER68026.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
Length = 265
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 119/274 (43%), Gaps = 47/274 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L Y G NYHGFQIQ ++NTI + K+L+K +K+ GRTDSGV A+
Sbjct: 3 VVLLCRYDGSNYHGFQIQ-PNNNTIQEEIEKSLKKI----NKKDVRLYMSGRTDSGVHAY 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV L + L P E ++K LN +P+DI++V + E + R++ +
Sbjct: 58 GQV--LHFDTDLNIPDE-------AWVKALNATIPKDIRIVGATSASEDFHVRYNSTQKT 108
Query: 124 YKYWFPQAGLDIDAM-----------------HKAAQYLVGTHDFRNLCKMN--VGNGVV 164
Y Y+ G ++D +A QY +G HDF + C N V + V
Sbjct: 109 Y-YYKLHIGREVDPFLLNYVGKHSFDFNFEKAQEALQYFIGEHDFSSFCSKNSSVEDKVR 167
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
L + + NI F I GFL++ +R I+ + V G +
Sbjct: 168 TIYSLTMEKDLINP-----------NIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEAN 216
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
++++ +EK R+ P L L +D+
Sbjct: 217 YVKEI--LEKKERQFAGPKADAAGLYLKEVLYDD 248
>gi|262402660|ref|ZP_06079221.1| tRNA pseudouridine synthase A [Vibrio sp. RC586]
gi|262351442|gb|EEZ00575.1| tRNA pseudouridine synthase A [Vibrio sp. RC586]
Length = 264
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 116/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V + VP+ + ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDIAVRWATAVPDDFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H ++++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDLKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E+ R + E L L ++
Sbjct: 215 IQWL--LEQKNRTLAAATAKAEGLYLVDVDY 243
>gi|329768896|ref|ZP_08260324.1| tRNA pseudouridine synthase A [Gemella sanguinis M325]
gi|328837259|gb|EGF86896.1| tRNA pseudouridine synthase A [Gemella sanguinis M325]
Length = 262
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 41/271 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L Y G YHGFQIQ ++NT+ + K+L+K K+ GRTDSGV A+
Sbjct: 3 VVLICRYDGSRYHGFQIQ-PNNNTVQEEIEKSLRKI----HKKNVRIYMSGRTDSGVHAY 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ + + G ++K +N +P+DI++V+ V +++ R++ + +
Sbjct: 58 GQVLHFDTDLNIPTDG---------WVKAINAMIPKDIRIVSAKVVNDEFHVRYNSIKKT 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y + + D +A +Y +G HDF + C N V +
Sbjct: 109 YSYKLYLGREIDPFLINYVGQHKFNFNFDKAKEALKYFIGEHDFSSFCSKNTS--VEDKV 166
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + + QN NI F I GFL++ +R I+ + V G +PE IQ
Sbjct: 167 RTIYSFKMDRDNQN-------DNIINFEITGNGFLYNMVRIIIGTVQDVAAGKYEPEYIQ 219
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
++ + K R P L L +DN
Sbjct: 220 EI--LAKKERSFSGPKADASGLYLKEVLYDN 248
>gi|381208363|ref|ZP_09915434.1| tRNA pseudouridine synthase A [Lentibacillus sp. Grbi]
Length = 248
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 102/250 (40%), Gaps = 46/250 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M I I Y G N+ G QIQ S + T+ L +AL K I GRTD GV
Sbjct: 1 MAKIKCVISYDGTNFSGLQIQ-SRERTVQGELEEALAK---IHKGAYVKVYPSGRTDKGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELP--YLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
A Q + ESD N LP + + LN LP DI V VP + ARFD
Sbjct: 57 HAKAQAIHF-----------ESDYNLLPADWKRALNAMLPSDIHVNEAEEVPASFHARFD 105
Query: 119 CL-----------------FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
L RNY Y +P LDI M + +Y GTHDF
Sbjct: 106 VLEKEYRYYILNEPEPDVFKRNYVYQYPYT-LDIAKMQETCKYFEGTHDFTTFSSAKASV 164
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
R LV V+ + Q EF +R GFL++ R I+ L VG+GN
Sbjct: 165 KGSKVRTLVE---VSCQREGSQI--------EFVMRGHGFLYNMARIIVGTLLEVGRGNL 213
Query: 222 KPEIIQQLVD 231
+P I +L D
Sbjct: 214 EPAEIPRLFD 223
>gi|229525612|ref|ZP_04415017.1| tRNA pseudouridine synthase A [Vibrio cholerae bv. albensis VL426]
gi|229339193|gb|EEO04210.1| tRNA pseudouridine synthase A [Vibrio cholerae bv. albensis VL426]
Length = 264
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 108/245 (44%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------SAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H+ +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHSRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|422347433|ref|ZP_16428345.1| tRNA pseudouridine synthase A 2 [Clostridium perfringens WAL-14572]
gi|422875317|ref|ZP_16921802.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|373224731|gb|EHP47068.1| tRNA pseudouridine synthase A 2 [Clostridium perfringens WAL-14572]
gi|380303847|gb|EIA16143.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 244
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 44/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G +Y G+Q Q NTI + +A++K KE+ RTDSGV
Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIG-NTIQQKVEEAIKKVT----KEEVEILGSSRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A V K S + PG+ + LN+ LP+DI ++ V E + AR+
Sbjct: 56 HAKAYVANFKTNSNI--PGKN-------FKAALNSKLPKDIVIMNSEEVAEDFHARYMTT 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y + LD+++M +A +Y +G HDF+ + G V
Sbjct: 107 GKTYCYTILNREEPPALERNYVYHVKKQ-LDVESMKEACKYFLGKHDFKAFQRP--GGTV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R +T + ++ N + + + GFL++ +R I+ L VG+G EK
Sbjct: 164 KTSVRTITDIHI----------ETEGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKA 213
Query: 224 EIIQQLVD 231
E I++++D
Sbjct: 214 EYIKEVID 221
>gi|334338934|ref|YP_004543914.1| tRNA pseudouridine synthase A [Desulfotomaculum ruminis DSM 2154]
gi|334090288|gb|AEG58628.1| tRNA pseudouridine synthase A [Desulfotomaculum ruminis DSM 2154]
Length = 251
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 105/249 (42%), Gaps = 47/249 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L + Y G +YHGFQ Q + L+A+ ++ GRTD+GV
Sbjct: 4 RNIKLTVAYDGTHYHGFQEQRGTGLPTVQEALEAVLSQL---AQKPVQVIGAGRTDAGVH 60
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKM---LNNNLPRDIKVVAWSPVPEKYSARFD 118
A QVV + D +P + +N LP DI V+ PVP+ + ARF
Sbjct: 61 ALGQVVNFR-----------CDPWRIPVERTPLAMNPLLPADISVLKAEPVPQDFHARFS 109
Query: 119 CLFRNYKYWF-----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ + Y+Y P+ LD AM +AAQYL+GTHDF++ G
Sbjct: 110 AIAKTYRYSIYHHRIMSPLQRLYCHHEPRR-LDTGAMKQAAQYLLGTHDFKSFQAQ--GT 166
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V + R + A V + +R GFL++ +R I L G G
Sbjct: 167 PVRDTVRTIYRAEVVEEG----------PLIHIYVRGNGFLYNMVRIIAGTLLKAGLGKI 216
Query: 222 KPEIIQQLV 230
KPE ++ ++
Sbjct: 217 KPEEMEHII 225
>gi|431801485|ref|YP_007228388.1| tRNA pseudouridine synthase A [Pseudomonas putida HB3267]
gi|430792250|gb|AGA72445.1| tRNA pseudouridine synthase A [Pseudomonas putida HB3267]
Length = 284
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPISVICAGRTDAGVHGC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+V R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 75 GQIVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARR 125
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + LD++ M +AAQYL+GTHDF C+
Sbjct: 126 YRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAEAAQYLLGTHDFSAFRASQCQAK----- 180
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ + + H VT H + ++R+ FL H +R I VL +G G E+P
Sbjct: 181 -SPIKHIYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMTIGAG-ERP 228
>gi|433589693|ref|YP_007279189.1| pseudouridylate synthase [Natrinema pellirubrum DSM 15624]
gi|448332712|ref|ZP_21521941.1| tRNA pseudouridine synthase A [Natrinema pellirubrum DSM 15624]
gi|433304473|gb|AGB30285.1| pseudouridylate synthase [Natrinema pellirubrum DSM 15624]
gi|445625687|gb|ELY79042.1| tRNA pseudouridine synthase A [Natrinema pellirubrum DSM 15624]
Length = 279
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 114/272 (41%), Gaps = 40/272 (14%)
Query: 5 ALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIE-DKEK-SSFACCGRTDSGVS 61
A +I Y G +YHGFQ Q D T+ + AL+ ++E D +K + +A GRTD+GVS
Sbjct: 5 AFRIAYDGTDYHGFQRQPQPDVPTVEDAIFDALRDLSVLEPDADKPAGYAAAGRTDAGVS 64
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A Q + L+ L + LN LP D++ A + P + A
Sbjct: 65 ALAQTIALEAPDWLAP-------------RALNGRLPADVRAWAAADAPSDFHATHHATR 111
Query: 122 RNYKY--WFPQA------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
R Y Y + P +D D H A + L GTHD RNL + N R +T A
Sbjct: 112 RAYTYHLYAPATETDGAPAVDDDRFHAACEALSGTHDVRNLTPDD-----HNTERSLTLA 166
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ + + + GF +R ++S+ VG G+ E I ++++ E
Sbjct: 167 A-----------ERDGDYIVLTVAAGGFSRELVRRLVSLARAVGTGDAPREKIDRVLEPE 215
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDE 265
P EPL L + +L + D+
Sbjct: 216 PLPGHEGIAPAPPEPLVLTDVRYPDLEFEIDD 247
>gi|153216039|ref|ZP_01950244.1| tRNA pseudouridine synthase A [Vibrio cholerae 1587]
gi|153829544|ref|ZP_01982211.1| tRNA pseudouridine synthase A [Vibrio cholerae 623-39]
gi|254226230|ref|ZP_04919824.1| tRNA pseudouridine synthase A [Vibrio cholerae V51]
gi|254291873|ref|ZP_04962656.1| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226]
gi|384424164|ref|YP_005633522.1| tRNA pseudouridine synthase A [Vibrio cholerae LMA3984-4]
gi|419829582|ref|ZP_14353068.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-1A2]
gi|419832553|ref|ZP_14356015.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-61A2]
gi|421350778|ref|ZP_15801143.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-25]
gi|422909825|ref|ZP_16944468.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-09]
gi|422916767|ref|ZP_16951095.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-02A1]
gi|423819434|ref|ZP_17715692.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-55C2]
gi|423852046|ref|ZP_17719485.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-59A1]
gi|423880194|ref|ZP_17723090.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-60A1]
gi|423997180|ref|ZP_17740439.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-02C1]
gi|424015890|ref|ZP_17755731.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-55B2]
gi|424018824|ref|ZP_17758620.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-59B1]
gi|424624368|ref|ZP_18062840.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-50A1]
gi|424628866|ref|ZP_18067164.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-51A1]
gi|424632899|ref|ZP_18071009.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-52A1]
gi|424635989|ref|ZP_18074004.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-55A1]
gi|424639929|ref|ZP_18077819.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-56A1]
gi|424647963|ref|ZP_18085633.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-57A1]
gi|443526787|ref|ZP_21092854.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-78A1]
gi|124114489|gb|EAY33309.1| tRNA pseudouridine synthase A [Vibrio cholerae 1587]
gi|125621266|gb|EAZ49606.1| tRNA pseudouridine synthase A [Vibrio cholerae V51]
gi|148875004|gb|EDL73139.1| tRNA pseudouridine synthase A [Vibrio cholerae 623-39]
gi|150422233|gb|EDN14197.1| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226]
gi|327483717|gb|AEA78124.1| tRNA pseudouridine synthase A [Vibrio cholerae LMA3984-4]
gi|341634585|gb|EGS59343.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-09]
gi|341638718|gb|EGS63356.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-02A1]
gi|395951223|gb|EJH61837.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-25]
gi|408014735|gb|EKG52359.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-50A1]
gi|408020285|gb|EKG57624.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-52A1]
gi|408025615|gb|EKG62667.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-56A1]
gi|408026222|gb|EKG63243.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-55A1]
gi|408035809|gb|EKG72265.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-57A1]
gi|408058064|gb|EKG92887.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-51A1]
gi|408621167|gb|EKK94170.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-1A2]
gi|408636079|gb|EKL08246.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-55C2]
gi|408642531|gb|EKL14275.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-60A1]
gi|408643911|gb|EKL15624.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-59A1]
gi|408651197|gb|EKL22453.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-61A2]
gi|408853887|gb|EKL93666.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-02C1]
gi|408861433|gb|EKM01026.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-55B2]
gi|408869131|gb|EKM08435.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-59B1]
gi|443454657|gb|ELT18457.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-78A1]
Length = 264
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 107/245 (43%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------SAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|325105198|ref|YP_004274852.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145]
gi|324974046|gb|ADY53030.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145]
Length = 258
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 37/243 (15%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
+++ Y G YHG+Q Q ++ T+ L AL EK CGRTD+GV A
Sbjct: 9 IELSYHGLQYHGWQYQPNAI-TVQEKLDNALSTFF----GEKIESLGCGRTDTGVHA--- 60
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
+ + + E S+++E+ +LK +N+ LP DI V V E ARFD + R+Y+
Sbjct: 61 ---TQFYAHFDTEKEFSENSEIRFLKGINSLLPYDIAVKHLHQVHEDAHARFDAIRRSYE 117
Query: 126 Y--------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
Y W + L++DAM+ A Y++ DF CK N GN
Sbjct: 118 YHIHFNKNPFKTYTSWLHKEPLNVDAMNIGASYILDYEDFGAFCKANAGN-------FTN 170
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ V+ A V+ ND F+I + FL + +R I+ L +G+G PE I+ +++
Sbjct: 171 NCIVSRAEWEVK-NDG----IIFHITANRFLRNMVRAIVGTLTDIGKGKYAPEHIKHIIE 225
Query: 232 IEK 234
+K
Sbjct: 226 SKK 228
>gi|372268713|ref|ZP_09504761.1| tRNA pseudouridine synthase A [Alteromonas sp. S89]
Length = 294
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 47/247 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G GFQ Q T+ L KAL K E + C GRTD+GV A
Sbjct: 27 IALGVEYCGTRLRGFQKQKHDPLTVQETLEKALSKVA----AEPVTLVCAGRTDAGVHAS 82
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ +++ +N +P D++V PVP ++ ARF R+
Sbjct: 83 SQVVHFDTTAQRPLKA---------WVQGVNTQMPFDVRVHWAQPVPAQFHARFSARSRS 133
Query: 124 YKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVN 165
Y+Y A LD++AM + A++LVG HDF + + + V
Sbjct: 134 YRYLIHSAPTRSAQAASEVTWTERTLDLEAMREGARHLVGEHDFSSFRAAQCQARSPVRR 193
Query: 166 FRRL-VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
RL + G + + + FL H +R I VL VG+G+ PE
Sbjct: 194 LTRLDIGRVG---------------QLIVLEVSATAFLHHMVRNIAGVLMAVGRGDRSPE 238
Query: 225 IIQQLVD 231
++Q+++
Sbjct: 239 WVRQVLE 245
>gi|421353778|ref|ZP_15804110.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-45]
gi|395952903|gb|EJH63516.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-45]
Length = 264
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 107/245 (43%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQETLEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------SAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|328957471|ref|YP_004374857.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4]
gi|328673795|gb|AEB29841.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4]
Length = 246
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 101/249 (40%), Gaps = 49/249 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIA---HHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR I + I Y G Y G+Q + SD TI ++L A+ T K+ GRTD
Sbjct: 1 MRNIKMTIEYDGGRYLGWQRLSDSDKTIQGKIENILTAMTGT-------KTEIIGSGRTD 53
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
+G A QV K S + P L LN LPRDI V VPE++ AR+
Sbjct: 54 AGAHAKGQVANFKTTSTMEFPA---------MLDHLNRYLPRDIVVKKLEEVPERFHARY 104
Query: 118 DC-----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVG 160
+ RN+ Y FP LDID M++A LVGTHDF
Sbjct: 105 NASGKKYSYYVWNNSIPSVFDRNFSYDFPGE-LDIDKMNEACNKLVGTHDF--------- 154
Query: 161 NGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ F L T + ++ F + +GFL+ IR IM L +G G
Sbjct: 155 ---IGFSSLKKSKKSTVRTIDEIKIHKEGDLLHFTFKGEGFLYKMIRIIMGTLLEIGSGM 211
Query: 221 EKPEIIQQL 229
P I +
Sbjct: 212 ADPSSIDAI 220
>gi|121728128|ref|ZP_01681164.1| tRNA pseudouridine synthase A [Vibrio cholerae V52]
gi|229512439|ref|ZP_04401912.1| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21]
gi|121629596|gb|EAX62018.1| tRNA pseudouridine synthase A [Vibrio cholerae V52]
gi|229350520|gb|EEO15467.1| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21]
Length = 264
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 108/245 (44%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H+ +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHSRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|209694634|ref|YP_002262562.1| tRNA pseudouridine synthase A [Aliivibrio salmonicida LFI1238]
gi|238057726|sp|B6EIW6.1|TRUA_ALISL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|208008585|emb|CAQ78760.1| tRNA pseudouridine synthase A [Aliivibrio salmonicida LFI1238]
Length = 262
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 114/269 (42%), Gaps = 44/269 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +YHG+Q Q + + + L+K ++ E C GRTD+GV
Sbjct: 3 IALCIEYDGASYHGWQSQKDVTS-----VQEELEKALMVVANEPIEVMCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV S P ++ +N NLP++I V V E + ARF R
Sbjct: 58 GQVVHFDTNSVRKLP---------VWMVGVNANLPKNIAVRWVKEVNEDFHARFTATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD D MH+A QYL+G +DF + + +R
Sbjct: 109 YRYIIFNNRQRPAIFSHGVSHYHETLDADLMHEAGQYLLGENDFTSFRAVRC-QSRTPWR 167
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
L+ H VT H + +I++ F+ H +R I L VG+G +KPE +Q
Sbjct: 168 NLI-HLKVTR----------HGDFIVIDIKANAFVHHMVRNITGSLIEVGRGKQKPEWVQ 216
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
L +E RK + E L L ++
Sbjct: 217 WL--LEAKDRKLAGATAKAEGLYLIDVDY 243
>gi|153826201|ref|ZP_01978868.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-2]
gi|419835861|ref|ZP_14359305.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-46B1]
gi|421342385|ref|ZP_15792791.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-43B1]
gi|423734222|ref|ZP_17707436.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-41B1]
gi|424008506|ref|ZP_17751455.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-44C1]
gi|149740061|gb|EDM54230.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-2]
gi|395945136|gb|EJH55806.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-43B1]
gi|408631342|gb|EKL03893.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-41B1]
gi|408858615|gb|EKL98289.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-46B1]
gi|408865690|gb|EKM05085.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-44C1]
Length = 264
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 110/245 (44%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP---QAG-------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P +G LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHDELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L +VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIVVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|118101049|ref|XP_417580.2| PREDICTED: pseudouridylate synthase-like 1 [Gallus gallus]
Length = 291
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 10 YQGFNYHGFQIQTSSDNT---IAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQV 66
Y G Y G +QTS++ + + ++L KA Q ++ F RTDSGV A C
Sbjct: 14 YWGTKYSGV-MQTSAEQSGIGVQNYLEKAAQN---LKPVVPIKFHISSRTDSGVHALCNS 69
Query: 67 VTLKIRSKLTSPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYK 125
L I+ +PG+ + + + LN++L P I++++ V + ARF L R Y
Sbjct: 70 AHLDIQR---APGKPAFQERV-LIGCLNHHLKPEPIRILSAYRVTNNFHARFSALSRTYI 125
Query: 126 Y--------------------WFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
Y W P G L++ AM AAQ+L+GTHDF C +N
Sbjct: 126 YRLLMGCTHHSEIPVFERDLCWAPPGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETPFR 185
Query: 165 NFRRLVTHAGV--TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + + A + +S + + + E +S+ FL+ Q+R ++ L VGQG
Sbjct: 186 SPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKLA 245
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
P I++L++++ P + M L L E++
Sbjct: 246 PHHIKELLEMKDARAFPAFAMAPSSGLFLKSVEYN 280
>gi|398999852|ref|ZP_10702585.1| pseudouridylate synthase I [Pseudomonas sp. GM18]
gi|398130906|gb|EJM20235.1| pseudouridylate synthase I [Pseudomonas sp. GM18]
Length = 284
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 108/249 (43%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S +T+ L KAL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVDTVQELLEKALSKVA----DSPVSLHCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDISV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEVTWNHRPLDVERMSEAAQYLVGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|374578976|ref|ZP_09652070.1| pseudouridylate synthase I [Desulfosporosinus youngiae DSM 17734]
gi|374415058|gb|EHQ87493.1| pseudouridylate synthase I [Desulfosporosinus youngiae DSM 17734]
Length = 259
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 120/274 (43%), Gaps = 41/274 (14%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I LK+ Y G NYHGFQ Q S L+++ + E+ + A GRTD+GV
Sbjct: 1 MRNIRLKLAYDGTNYHGFQRQVESVGPTIQGTLESVWAKLV---DEEVTLAMAGRTDAGV 57
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q+V +++ ++++P K N+ LPRDI++ V + ++AR+
Sbjct: 58 HALGQIVNFMTSARIP-------EDKIP--KAFNSLLPRDIRIHQAECVSDDFNARWSAK 108
Query: 121 FRNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
++ Y Y L+I M +AA++L G H+F+ G
Sbjct: 109 WKRYDYLLDNKPIPDLFKRLYAAHEPIPLNITLMQQAARFLEGRHNFKTFAAS--GGDSK 166
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
F R + Q ++ + + + GFL+H +R I+ L VG+G P
Sbjct: 167 RFERTIYRC---------QVSELENQLIRVSCVGDGFLYHMVRIIVGTLMDVGKGRILPG 217
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
I +++ ++ R V +G L L H + +
Sbjct: 218 EIPEIIASQERKRARVIAPAQG--LTLVHVNYSD 249
>gi|429887588|ref|ZP_19369103.1| tRNA pseudouridine synthase A [Vibrio cholerae PS15]
gi|429225389|gb|EKY31642.1| tRNA pseudouridine synthase A [Vibrio cholerae PS15]
Length = 264
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 108/245 (44%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQDALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------SAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H+ +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHSRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|386841908|ref|YP_006246966.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374102209|gb|AEY91093.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451795202|gb|AGF65251.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 287
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 43/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G +HG+ Q T+ + AL+ + +E GRTD+GV A
Sbjct: 12 VRLDLSYDGTGFHGWAKQAGGRRTVQGEIEDALR--TVTRSRETYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + + E LK L LP+D++V A P ++ARF ++R
Sbjct: 70 GQVAHVDLPEGVWREHHEK------LLKRLAGRLPKDVRVWALREAPSGFNARFSAVWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNEAARTLLGEHDFAAYCKKR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + I +R+ F + +R ++ L VG G+ P
Sbjct: 179 TTIRTL----------QELSLVRGEDGIITATVRADAFCHNMVRSLIGALLFVGDGHRGP 228
Query: 224 E 224
E
Sbjct: 229 E 229
>gi|15641014|ref|NP_230645.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587328|ref|ZP_01677099.1| tRNA pseudouridine synthase A [Vibrio cholerae 2740-80]
gi|147674772|ref|YP_001216471.1| tRNA pseudouridine synthase A [Vibrio cholerae O395]
gi|153819838|ref|ZP_01972505.1| tRNA pseudouridine synthase A [Vibrio cholerae NCTC 8457]
gi|183179415|ref|ZP_02957626.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-3]
gi|227081173|ref|YP_002809724.1| tRNA pseudouridine synthase A [Vibrio cholerae M66-2]
gi|227117366|ref|YP_002819262.1| tRNA pseudouridine synthase A [Vibrio cholerae O395]
gi|229505402|ref|ZP_04394912.1| tRNA pseudouridine synthase A [Vibrio cholerae BX 330286]
gi|229510928|ref|ZP_04400407.1| tRNA pseudouridine synthase A [Vibrio cholerae B33]
gi|229518049|ref|ZP_04407493.1| tRNA pseudouridine synthase A [Vibrio cholerae RC9]
gi|229529907|ref|ZP_04419297.1| tRNA pseudouridine synthase A [Vibrio cholerae 12129(1)]
gi|229608421|ref|YP_002879069.1| tRNA pseudouridine synthase A [Vibrio cholerae MJ-1236]
gi|254848129|ref|ZP_05237479.1| tRNA pseudouridine synthase A [Vibrio cholerae MO10]
gi|255744781|ref|ZP_05418732.1| tRNA pseudouridine synthase A [Vibrio cholera CIRS 101]
gi|262151270|ref|ZP_06028406.1| tRNA pseudouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262167166|ref|ZP_06034879.1| tRNA pseudouridine synthase A [Vibrio cholerae RC27]
gi|262190865|ref|ZP_06049084.1| tRNA pseudouridine synthase A [Vibrio cholerae CT 5369-93]
gi|297578606|ref|ZP_06940534.1| tRNA pseudouridine synthase A [Vibrio cholerae RC385]
gi|298498887|ref|ZP_07008694.1| tRNA pseudouridine synthase A [Vibrio cholerae MAK 757]
gi|360034904|ref|YP_004936667.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740826|ref|YP_005332795.1| tRNA pseudouridine synthase A [Vibrio cholerae IEC224]
gi|417813032|ref|ZP_12459689.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-49A2]
gi|417815897|ref|ZP_12462529.1| tRNA pseudouridine synthase A [Vibrio cholerae HCUF01]
gi|417820422|ref|ZP_12467036.1| tRNA pseudouridine synthase A [Vibrio cholerae HE39]
gi|418332044|ref|ZP_12942980.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-06A1]
gi|418336790|ref|ZP_12945688.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-23A1]
gi|418343300|ref|ZP_12950089.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-28A1]
gi|418348458|ref|ZP_12953192.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-43A1]
gi|418354971|ref|ZP_12957692.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-61A1]
gi|419825444|ref|ZP_14348949.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1033(6)]
gi|421316566|ref|ZP_15767137.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1032(5)]
gi|421320626|ref|ZP_15771183.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1038(11)]
gi|421324620|ref|ZP_15775146.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1041(14)]
gi|421328281|ref|ZP_15778795.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1042(15)]
gi|421331300|ref|ZP_15781780.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1046(19)]
gi|421334874|ref|ZP_15785341.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1048(21)]
gi|421338769|ref|ZP_15789204.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-20A2]
gi|421346986|ref|ZP_15797368.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-46A1]
gi|422306551|ref|ZP_16393724.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1035(8)]
gi|422891116|ref|ZP_16933501.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-40A1]
gi|422901996|ref|ZP_16937329.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-48A1]
gi|422906208|ref|ZP_16941041.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-70A1]
gi|422912797|ref|ZP_16947316.1| tRNA pseudouridine synthase A [Vibrio cholerae HFU-02]
gi|422925278|ref|ZP_16958303.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-38A1]
gi|423144597|ref|ZP_17132206.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-19A1]
gi|423149276|ref|ZP_17136604.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-21A1]
gi|423153093|ref|ZP_17140287.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-22A1]
gi|423155904|ref|ZP_17143008.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-32A1]
gi|423159731|ref|ZP_17146699.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-33A2]
gi|423164445|ref|ZP_17151207.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-48B2]
gi|423730568|ref|ZP_17703882.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-17A1]
gi|423752355|ref|ZP_17711898.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-50A2]
gi|423892271|ref|ZP_17725954.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-62A1]
gi|423927049|ref|ZP_17730571.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-77A1]
gi|423951881|ref|ZP_17733899.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-40]
gi|423979152|ref|ZP_17737449.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-46]
gi|424001592|ref|ZP_17744678.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-17A2]
gi|424005753|ref|ZP_17748733.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-37A1]
gi|424023770|ref|ZP_17763430.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-62B1]
gi|424026563|ref|ZP_17766176.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-69A1]
gi|424585890|ref|ZP_18025480.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1030(3)]
gi|424590241|ref|ZP_18029678.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1037(10)]
gi|424594591|ref|ZP_18033924.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1040(13)]
gi|424598456|ref|ZP_18037650.1| tRNA pseudouridine synthase A [Vibrio Cholerae CP1044(17)]
gi|424601201|ref|ZP_18040354.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1047(20)]
gi|424606184|ref|ZP_18045144.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1050(23)]
gi|424610019|ref|ZP_18048873.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-39A1]
gi|424612822|ref|ZP_18051625.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-41A1]
gi|424616641|ref|ZP_18055328.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-42A1]
gi|424621588|ref|ZP_18060111.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-47A1]
gi|424644564|ref|ZP_18082312.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-56A2]
gi|424652242|ref|ZP_18089718.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-57A2]
gi|424656146|ref|ZP_18093444.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-81A2]
gi|440709274|ref|ZP_20889931.1| tRNA pseudouridine synthase A [Vibrio cholerae 4260B]
gi|443503099|ref|ZP_21070081.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-64A1]
gi|443507007|ref|ZP_21073791.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-65A1]
gi|443511124|ref|ZP_21077781.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-67A1]
gi|443514682|ref|ZP_21081213.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-68A1]
gi|443518487|ref|ZP_21084897.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-71A1]
gi|443523374|ref|ZP_21089603.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-72A2]
gi|443530986|ref|ZP_21097001.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-7A1]
gi|443534761|ref|ZP_21100657.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-80A1]
gi|443538330|ref|ZP_21104185.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-81A1]
gi|449056496|ref|ZP_21735164.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 str. Inaba G4222]
gi|24212594|sp|Q9KTA4.1|TRUA_VIBCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|172047415|sp|A5F2T4.1|TRUA_VIBC3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254764874|sp|C3LTP7.1|TRUA_VIBCM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|9655462|gb|AAF94160.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548411|gb|EAX58471.1| tRNA pseudouridine synthase A [Vibrio cholerae 2740-80]
gi|126509619|gb|EAZ72213.1| tRNA pseudouridine synthase A [Vibrio cholerae NCTC 8457]
gi|146316655|gb|ABQ21194.1| tRNA pseudouridine synthase A [Vibrio cholerae O395]
gi|183012826|gb|EDT88126.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-3]
gi|227009061|gb|ACP05273.1| tRNA pseudouridine synthase A [Vibrio cholerae M66-2]
gi|227012816|gb|ACP09026.1| tRNA pseudouridine synthase A [Vibrio cholerae O395]
gi|229333681|gb|EEN99167.1| tRNA pseudouridine synthase A [Vibrio cholerae 12129(1)]
gi|229344764|gb|EEO09738.1| tRNA pseudouridine synthase A [Vibrio cholerae RC9]
gi|229350893|gb|EEO15834.1| tRNA pseudouridine synthase A [Vibrio cholerae B33]
gi|229357625|gb|EEO22542.1| tRNA pseudouridine synthase A [Vibrio cholerae BX 330286]
gi|229371076|gb|ACQ61499.1| tRNA pseudouridine synthase A [Vibrio cholerae MJ-1236]
gi|254843834|gb|EET22248.1| tRNA pseudouridine synthase A [Vibrio cholerae MO10]
gi|255737812|gb|EET93206.1| tRNA pseudouridine synthase A [Vibrio cholera CIRS 101]
gi|262024387|gb|EEY43075.1| tRNA pseudouridine synthase A [Vibrio cholerae RC27]
gi|262030961|gb|EEY49589.1| tRNA pseudouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262033256|gb|EEY51775.1| tRNA pseudouridine synthase A [Vibrio cholerae CT 5369-93]
gi|297536200|gb|EFH75033.1| tRNA pseudouridine synthase A [Vibrio cholerae RC385]
gi|297543220|gb|EFH79270.1| tRNA pseudouridine synthase A [Vibrio cholerae MAK 757]
gi|340038053|gb|EGQ99027.1| tRNA pseudouridine synthase A [Vibrio cholerae HE39]
gi|340041623|gb|EGR02589.1| tRNA pseudouridine synthase A [Vibrio cholerae HCUF01]
gi|340042336|gb|EGR03301.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-49A2]
gi|341623902|gb|EGS49418.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-70A1]
gi|341624344|gb|EGS49843.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-48A1]
gi|341625246|gb|EGS50709.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-40A1]
gi|341639981|gb|EGS64586.1| tRNA pseudouridine synthase A [Vibrio cholerae HFU-02]
gi|341647591|gb|EGS71668.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-38A1]
gi|356419456|gb|EHH73003.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-06A1]
gi|356420193|gb|EHH73721.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-21A1]
gi|356425455|gb|EHH78825.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-19A1]
gi|356431893|gb|EHH85092.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-22A1]
gi|356432368|gb|EHH85565.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-23A1]
gi|356437147|gb|EHH90255.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-28A1]
gi|356442204|gb|EHH95066.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-32A1]
gi|356447197|gb|EHH99987.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-43A1]
gi|356449329|gb|EHI02083.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-33A2]
gi|356453373|gb|EHI06036.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-61A1]
gi|356455789|gb|EHI08424.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-48B2]
gi|356646058|gb|AET26113.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 str. 2010EL-1786]
gi|378794336|gb|AFC57807.1| tRNA pseudouridine synthase A [Vibrio cholerae IEC224]
gi|395920290|gb|EJH31112.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1041(14)]
gi|395921523|gb|EJH32343.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1032(5)]
gi|395923608|gb|EJH34419.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1038(11)]
gi|395929787|gb|EJH40536.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1042(15)]
gi|395932564|gb|EJH43307.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1046(19)]
gi|395936735|gb|EJH47458.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1048(21)]
gi|395943717|gb|EJH54391.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-20A2]
gi|395946046|gb|EJH56710.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-46A1]
gi|395961247|gb|EJH71587.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-56A2]
gi|395962695|gb|EJH72988.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-57A2]
gi|395965582|gb|EJH75749.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-42A1]
gi|395973295|gb|EJH82861.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-47A1]
gi|395976686|gb|EJH86128.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1030(3)]
gi|395978143|gb|EJH87533.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1047(20)]
gi|408008858|gb|EKG46813.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-39A1]
gi|408015443|gb|EKG53028.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-41A1]
gi|408035038|gb|EKG71518.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1037(10)]
gi|408035887|gb|EKG72341.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1040(13)]
gi|408044220|gb|EKG80165.1| tRNA pseudouridine synthase A [Vibrio Cholerae CP1044(17)]
gi|408045521|gb|EKG81342.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1050(23)]
gi|408056172|gb|EKG91067.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-81A2]
gi|408610981|gb|EKK84346.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1033(6)]
gi|408625967|gb|EKK98856.1| tRNA pseudouridine synthase A [Vibrio cholerae CP1035(8)]
gi|408626173|gb|EKK99052.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-17A1]
gi|408638980|gb|EKL10835.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-50A2]
gi|408656960|gb|EKL28051.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-77A1]
gi|408658314|gb|EKL29384.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-62A1]
gi|408660677|gb|EKL31687.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-40]
gi|408665757|gb|EKL36567.1| tRNA pseudouridine synthase A [Vibrio cholerae HE-46]
gi|408847152|gb|EKL87223.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-37A1]
gi|408848728|gb|EKL88773.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-17A2]
gi|408871841|gb|EKM11068.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-62B1]
gi|408880344|gb|EKM19269.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-69A1]
gi|439974863|gb|ELP50999.1| tRNA pseudouridine synthase A [Vibrio cholerae 4260B]
gi|443432410|gb|ELS74938.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-64A1]
gi|443436040|gb|ELS82163.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-65A1]
gi|443439828|gb|ELS89524.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-67A1]
gi|443443926|gb|ELS97208.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-68A1]
gi|443447536|gb|ELT04178.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-71A1]
gi|443450474|gb|ELT10749.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-72A2]
gi|443458069|gb|ELT25465.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-7A1]
gi|443461912|gb|ELT32967.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-80A1]
gi|443465919|gb|ELT40578.1| tRNA pseudouridine synthase A [Vibrio cholerae HC-81A1]
gi|448264319|gb|EMB01558.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 str. Inaba G4222]
Length = 264
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 107/245 (43%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|392939543|ref|ZP_10305187.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
gi|392291293|gb|EIV99736.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
Length = 244
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 121/268 (45%), Gaps = 46/268 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + + + Y G NYHG+Q Q ++ T+ L KA++K E+ + RTD+GV
Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQENA-VTVQEVLQKAIKKVT----GEEVNLIGASRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV + +K+ P E+ LPY LN+ LP DI VV V + + AR+
Sbjct: 56 HALYQVANFRTNTKI--PAEK-----LPY--ALNSVLPDDIVVVQAKDVEDSFHARYSAK 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ YKY W L+I+ M KAA YL+GTHDF +G
Sbjct: 107 RKRYKYIILNRKFPMPTMRNYCWHIGYPLNIEEMKKAASYLIGTHDFSAFR----ASGSS 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ T +T ++ N+ NI I + GFL++ +R I+ L VG G K +
Sbjct: 163 KTSTIRTVYDLT-----IEKNEDFINI---EIEANGFLYNMVRIIVGTLVYVGLGKIKED 214
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
++ DI K R V P LY
Sbjct: 215 ---EVYDILK-SRDRTKAGVTAPPQGLY 238
>gi|86148380|ref|ZP_01066673.1| tRNA pseudouridine synthase A [Vibrio sp. MED222]
gi|218708902|ref|YP_002416523.1| tRNA pseudouridine synthase A [Vibrio splendidus LGP32]
gi|254764875|sp|B7VL84.1|TRUA_VIBSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|85833863|gb|EAQ52028.1| tRNA pseudouridine synthase A [Vibrio sp. MED222]
gi|218321921|emb|CAV17914.1| tRNA pseudouridine synthase A [Vibrio splendidus LGP32]
Length = 264
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 114/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y G+Q Q + + + L+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTHYFGWQRQRDVKS-----VQEELEKALSVVANHPVEVMCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + D + + N N+P+DI V + V E + ARF R
Sbjct: 58 GQVVHFET---------NVDRKMVAWTMGANANMPKDIAVRWATEVNEDFHARFSATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIFNHALRPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQN-VQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N + N + H + +I++ F+ H +R I L VG+G++KPE
Sbjct: 157 --ATHCQSRSPWRNMIHLNVTRHGHYIVIDIKANAFVHHMVRNITGSLIAVGKGDQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E RK + E L L ++
Sbjct: 215 IQWL--LEAKDRKVAGATAKAEGLYLVDVDY 243
>gi|27365335|ref|NP_760863.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6]
gi|37680609|ref|NP_935218.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016]
gi|320155720|ref|YP_004188099.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O]
gi|31340462|sp|Q8CWK3.1|TRUA_VIBVU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|42559737|sp|Q7M7J4.1|TRUA_VIBVY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|27361482|gb|AAO10390.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6]
gi|37199357|dbj|BAC95189.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016]
gi|319931032|gb|ADV85896.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O]
Length = 264
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 116/276 (42%), Gaps = 52/276 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYNGTDYFGWQRQREV-ASVQEKLEKALSKVA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTL--KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV + K+ + + N NLP+DI V VP+++ ARF
Sbjct: 58 GQVVHFDTNVERKMVA-----------WTMGANANLPKDIAVRWAKAVPDEFHARFSATA 106
Query: 122 RNYKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y LD MH+A QYL+G +DF + + +
Sbjct: 107 RRYRYIIFNHALRPGILGSGVSHYHGELDEKKMHEAGQYLLGENDFTSFRAVQC-QSLSP 165
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
FR ++ H VT H + +I++ F+ H +R I L +VG+G + PE
Sbjct: 166 FRNMI-HLNVT----------RHGHYVVIDIKANAFVHHMVRNITGSLIMVGRGEQDPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
I+ L +E RK P + E L L Y EFD
Sbjct: 215 IKWL--LEAKDRKLAGPTAKAEGLYLVDVDYPEEFD 248
>gi|325959678|ref|YP_004291144.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
gi|325331110|gb|ADZ10172.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
Length = 271
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 40/286 (13%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M IA K+ Y G +YHGFQ Q + TI LL+A +K+ + + EKS ++ GRTD GV
Sbjct: 1 MLKIAFKVAYIGTDYHGFQRQPNLP-TIEGELLRAFKKSGISDSPEKSDYSIAGRTDRGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
SA VV LK +T + +N LP +I+++ + V + R+ L
Sbjct: 60 SALGNVVCLKTDKDVT-------------INRINYYLPSNIRIIGSTMVSNGFKPRYAKL 106
Query: 121 FRNYKYWFPQA----GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
R+Y+Y ++ L++ M +AA+ + G H++ +NF + A
Sbjct: 107 -RHYRYILDKSLCPNTLNLKLMKQAAKQMEGKHNY------------INFSKRSERAPER 153
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+ +V ++ NI F++ + FLW+ +R ++ VL + G+ E ++ L + P
Sbjct: 154 MVY-SVDLVETPDNIV-FDVVGESFLWNMVRKMVKVLVMFGREELTLENLETLFN----P 207
Query: 237 RKP--VYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWS 280
P + P V + L L +D + + + V++ ++ L ++++
Sbjct: 208 DVPAAIKP-VASDGLILMDVVYDGIEFPCEGYAVNNFMKTLKQEYA 252
>gi|239624119|ref|ZP_04667150.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522150|gb|EEQ62016.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 249
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 10 YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTL 69
Y G Y G+Q Q +++ TI L + L+K D E GRTD+GV A QV
Sbjct: 9 YDGTRYDGWQKQGNTEKTIQGKLERVLEKL----DGEPVEVRGSGRTDAGVHARGQVADF 64
Query: 70 KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY--- 126
+++ K +P E ++ LN LP DI V PE++ +R + + + Y+Y
Sbjct: 65 QLKGK-RAPEE--------VMEYLNRYLPEDIAVWRIQTAPERFHSRLNAVRKTYRYQIE 115
Query: 127 -----------WFPQAG--LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
++ G LD+ +M +A YL GT DF++ C GN +
Sbjct: 116 LGPKKDVFRRSYYYGLGQELDVASMERAVAYLTGTRDFKSFC----GNKKMK-------K 164
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
++++F + GFL +R + L VGQG KPE I+ +++
Sbjct: 165 STVRTLESIRFERLEDTRLHISFTGNGFLQQMVRILTGTLIEVGQGRRKPEDIRSILE 222
>gi|302553571|ref|ZP_07305913.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM
40736]
gi|302471189|gb|EFL34282.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM
40736]
Length = 284
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 100/241 (41%), Gaps = 43/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL+ + KE GRTD+GV A
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALR--TVTRSKETYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E ++ LK L LPRD++V A P ++ARF ++R
Sbjct: 70 GQVAHVDL------PREVWAEHHQKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRNHVLWHDWP---LDVDAMNEAARRLLGEHDFAAYCKKR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + I +R+ F + +R ++ L VG G+ P
Sbjct: 179 TTIRTL----------QELSLVKGEDGIITATVRADAFCHNMVRSLIGALLFVGDGHRPP 228
Query: 224 E 224
+
Sbjct: 229 D 229
>gi|403071277|ref|ZP_10912609.1| tRNA pseudouridine synthase A [Oceanobacillus sp. Ndiop]
Length = 249
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 117/276 (42%), Gaps = 48/276 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNT--IAHHLLKALQKTCLIEDKEKSSFACCGRTDS 58
M I KI Y G + GFQ+Q + + +LK + K I GRTD+
Sbjct: 1 MARIKCKIKYDGSEFSGFQVQPQNRTVQGVLESVLKEMHKGAEIR------LQASGRTDT 54
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF- 117
GV A QV+ SP + + N + + LN LP DI + + V +++ AR+
Sbjct: 55 GVHAIGQVI------HFDSPFDIPEKN---WKRALNTLLPDDIYIQEVTKVSDEFHARYS 105
Query: 118 ----------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
D RNY ++FP LDID M +A +YL GTHDF
Sbjct: 106 VKEKEYHYYVWNAEEPDIFKRNYSFYFPYQ-LDIDKMLEACRYLEGTHDFTTFSSAKSTI 164
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
R L HA N EF R GFL++ +R ++SVL VGQG
Sbjct: 165 KGEKIRTLF-HASCKK----------QGNEVEFIFRGSGFLYNMVRIMVSVLLDVGQGRR 213
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
KP I L + K R+ + + L L++ +++
Sbjct: 214 KPTDIIDL--LAKKDRQLAGKTISPQGLYLWNVKYE 247
>gi|339051056|ref|ZP_08647847.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047]
gi|330721742|gb|EGG99735.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047]
Length = 269
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 107/246 (43%), Gaps = 45/246 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G Y+G+Q Q T+ L AL K I D F C GRTD+GV A
Sbjct: 11 VALGIEYHGSGYNGWQAQNHESITVQCELESALSK---IADAPVRVF-CAGRTDAGVHAT 66
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + T E +++ N +LP I+V VPE + ARF + R
Sbjct: 67 GQVVHFDVLKPRT---------ENAWVRGTNTHLPDSIRVRWAKFVPEDFHARFSAMARR 117
Query: 124 YKYW----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y F LD++ M AA YLVG HDF + +R
Sbjct: 118 YIYVIENTPVHSAIMNKHFSFEDRPLDVERMQLAANYLVGEHDFSS------------YR 165
Query: 168 RLVTHAGVTSAWQNVQF--NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
+ A SA + V + H ++ +I + FL H +R + VL +VG G +P
Sbjct: 166 TVRCQA--KSAIKTVHHLKVERHGSLIAIDIYANAFLHHMVRNVAGVLMMVGMGKAEPVW 223
Query: 226 IQQLVD 231
+Q++D
Sbjct: 224 AKQVLD 229
>gi|422922257|ref|ZP_16955446.1| tRNA pseudouridine synthase A [Vibrio cholerae BJG-01]
gi|341646404|gb|EGS70517.1| tRNA pseudouridine synthase A [Vibrio cholerae BJG-01]
Length = 264
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 107/245 (43%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREV-KSVQDALEKALSKIA----NHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|423686468|ref|ZP_17661276.1| tRNA pseudouridine synthase A [Vibrio fischeri SR5]
gi|371494536|gb|EHN70134.1| tRNA pseudouridine synthase A [Vibrio fischeri SR5]
Length = 262
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 120/291 (41%), Gaps = 53/291 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q N++ L KAL I E C GRTD+GV
Sbjct: 3 IALCIEYDGAEYYGWQRQRDV-NSVQEELEKALT----IVANEPIEVHCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRS--KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV S KL + ++ N NLP++I V V E + ARF
Sbjct: 58 GQVVHFDTTSSRKLAA-----------WMMGANANLPKNIAVRWAKEVNEDFHARFTATA 106
Query: 122 RNYKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y LD D MH+A QYL+G +DF +
Sbjct: 107 RRYRYIIYNNRLRPAILGHGVSHYHDALDADLMHEAGQYLLGENDF------------TS 154
Query: 166 FRRLVTHAGVTSAWQNVQF--NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
FR H S W+N+ H + +I++ F+ H +R I L VG+G +KP
Sbjct: 155 FR--AVHCQSRSPWRNLMHLKVTRHGDFIVIDIKANAFVHHMVRNITGSLIEVGKGKQKP 212
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRD 274
E I+ L +E RK + E L L ++ L W + + + D
Sbjct: 213 EWIKWL--LEAKDRKLAGATAKAEGLYLVDVDYP-LEWELPRVPLGPLFLD 260
>gi|365157295|ref|ZP_09353569.1| tRNA pseudouridine synthase A [Bacillus smithii 7_3_47FAA]
gi|363625441|gb|EHL76480.1| tRNA pseudouridine synthase A [Bacillus smithii 7_3_47FAA]
Length = 247
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 120/270 (44%), Gaps = 49/270 (18%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
I Y G + G+QIQ + T+ + AL+ ++ E GRTD+GV A QV+
Sbjct: 8 ISYDGSGFAGYQIQ-PAKRTVQSEIESALK---VLHKGEAVKVTASGRTDAGVHARGQVI 63
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF---------- 117
+ L P E ++++LN+ P DI + V + + ARF
Sbjct: 64 HFD--TSLPIP-------ETKWVQVLNSIFPEDIAAIQVEAVDDAFHARFSATGKEYRYR 114
Query: 118 -------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLC--KMNVGNGVVNFRR 168
D L R Y Y FP + L+I+AM +AA+YL GTHDF + C K V + V R+
Sbjct: 115 LYTTPHRDPLKRFYAYHFPYS-LNIEAMEEAARYLTGTHDFTSFCSAKTEVKDKVRTIRK 173
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ A V + V F + GFL++ +R I+ L G G PE I +
Sbjct: 174 I---AIVQEGEEIV-----------FQLVGNGFLYNMVRIIVGTLLECGTGKRSPEEIPE 219
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
+ +E R V E L L++ +DN
Sbjct: 220 I--LEAKDRSKAGKTVPPEGLYLWNVFYDN 247
>gi|212637986|ref|YP_002314506.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1]
gi|226708641|sp|B7GJ99.1|TRUA_ANOFW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212559466|gb|ACJ32521.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1]
Length = 246
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 120/275 (43%), Gaps = 46/275 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I I Y G N+ G+QIQ T+ L +AL +I + GRTD+ V
Sbjct: 1 MRRIKCTIAYDGTNFAGYQIQ-QQKRTVQGELERAL---SIIHKGQFVRVYASGRTDATV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV+ + LT P E + K LN LP D+ V S VP + ARF
Sbjct: 57 HAYGQVIHFD--TPLTIPDER-------WPKALNALLPDDVIVKEASEVPSSFHARFSVK 107
Query: 121 FRNYKY--WFPQAGL-------------DIDAMHKAAQYLVGTHDFRNLC--KMNVGNGV 163
+ Y+Y W + + + AM++A +YL+GTHDF + C K V + V
Sbjct: 108 KKEYRYRVWIGEKNVFLRHYVYHHPYDVSVPAMNEALRYLIGTHDFTSFCSAKTEVDDKV 167
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R + A V + + F + GFL++ +R I+ + VG+G
Sbjct: 168 ----RTIYEAEVVQEGEELI----------FRLVGNGFLYNMVRIIVGTVLEVGRGERCA 213
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
E I+ + +E+ R G L L+H +DN
Sbjct: 214 EEIKTI--LEQKNRSVAGKTAPGHGLYLWHVSYDN 246
>gi|407070843|ref|ZP_11101681.1| tRNA pseudouridine synthase A [Vibrio cyclitrophicus ZF14]
Length = 264
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 113/271 (41%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y G+Q Q + + + L+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTHYFGWQRQRDVKS-----VQEELEKALSVVANHPVEVMCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + D + + N N+P+DI V + V E + ARF R
Sbjct: 58 GQVVHFET---------NVDRKMVAWTMGANANMPKDIAVRWATEVNEDFHARFSATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIFNHALRPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQN-VQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N + N + H + +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --ATHCQSRSPWRNMIHLNVTRHGHYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E RK + E L L ++
Sbjct: 215 IQWL--LEAKDRKVAGATAKAEGLYLVDVDY 243
>gi|84394308|ref|ZP_00993032.1| tRNA pseudouridine synthase A [Vibrio splendidus 12B01]
gi|84375076|gb|EAP91999.1| tRNA pseudouridine synthase A [Vibrio splendidus 12B01]
Length = 264
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 113/271 (41%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y G+Q Q + + + L+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTHYFGWQRQRDVKS-----VQEELEKALSVVANHPVEVMCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + D + + N N+P+DI V + V E + ARF R
Sbjct: 58 GQVVHFET---------NVDRKMVAWTMGANANMPKDIAVRWATEVNEDFHARFSATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIFNHALRPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQN-VQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N + N + H + +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --ATHCQSRSPWRNMIHLNVTRHGHYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E RK + E L L ++
Sbjct: 215 IQWL--LEAKDRKVAGATAKAEGLYLVDVDY 243
>gi|254506845|ref|ZP_05118984.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 16]
gi|219550130|gb|EED27116.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 16]
Length = 264
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 113/271 (41%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q + + + L+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTQYYGWQRQQDVKS-----VQEELEKALSVVANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + N NLP DI V VPE++ ARF R
Sbjct: 58 GQVVHFDT---------TASRKMVAWTMGANANLPGDIAVRWAKEVPEEFHARFTATARR 108
Query: 124 YKYWFPQAGL----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + L D MH AAQYL+G +DF +FR
Sbjct: 109 YRYIIFNSALRPGILSTGVSHYHGELDEKKMHLAAQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N+ N + HN +I++ F+ H +R I L VG+G ++PE
Sbjct: 157 --ATHCQSRSPWRNMMHINVTRHNQYVVIDIKANAFVHHMVRNITGSLICVGRGEQEPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L+ + RK + E L L ++
Sbjct: 215 IQWLLGAKD--RKLAGATAKAEGLYLVDVDY 243
>gi|335419695|ref|ZP_08550744.1| tRNA pseudouridine synthase A [Salinisphaera shabanensis E1L3A]
gi|334896227|gb|EGM34381.1| tRNA pseudouridine synthase A [Salinisphaera shabanensis E1L3A]
Length = 259
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 112/268 (41%), Gaps = 46/268 (17%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G YHG+Q Q + +++ L AL + + C GRTD+GV A Q+V
Sbjct: 7 VEYDGSAYHGWQSQPHA-SSVQDTLEAALTRLAAAPIRT----ICSGRTDTGVHAQGQIV 61
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
E + +E +L N LP DI + PVP+ + ARF + R Y+YW
Sbjct: 62 HFDT---------EVERSERAWLLGTNRYLPEDIALQWVVPVPQAFHARFGAVAREYRYW 112
Query: 128 F-----PQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
P A LD+DAM AAQ+LVG HDF FR
Sbjct: 113 ILDRTAPSALWRNRAYHSHHRLDVDAMQTAAQHLVGYHDF------------SAFRAAAC 160
Query: 172 HAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A + W+++ D + +R+ FL H +R I+ L VG+G P + QL
Sbjct: 161 QA--KTPWRDLTRCDVVRRGDWIRLEVRANAFLHHMVRNIVGSLLPVGRGERGPAWLAQL 218
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+ + R + +G L H D
Sbjct: 219 LANKDRRRAGMTAPAQGLSLRRVHYPPD 246
>gi|300709217|ref|XP_002996775.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01]
gi|239606099|gb|EEQ83104.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01]
Length = 313
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL I Y G Y G + ++I + + AL + L + GRTD GVS
Sbjct: 37 RTIALLISYHGEKYRGLA-ECKDGDSIGNRIKNALLLSTLAD-----HIVYAGRTDKGVS 90
Query: 62 AFCQVVTLKIRSKLTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
A V ++KI+S L + D++E Y +LNN LP DI+V+ W+PV + +SAR
Sbjct: 91 AIGMVASVKIKSLLRENTSRYFLNDDDNHEFNYQAILNNYLPEDIRVIGWAPVEDGFSAR 150
Query: 117 FDCLFRNYKYWFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
F C+ R Y+Y+F + DI+ M + Q ++ +F NL K + +
Sbjct: 151 FTCIKRKYRYYFTNPFVKIKNQIRLKYDINKMEEMCQKILTLKNFYNLSKH--SDKSARY 208
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
R V Q ++ D ++ +I+++ FL + +R I VL + G+
Sbjct: 209 NRTV------DICQIIKEGDLYY----LDIQAKSFLHNMVRKIFWVLEMAGK 250
>gi|170720741|ref|YP_001748429.1| tRNA pseudouridine synthase A [Pseudomonas putida W619]
gi|169758744|gb|ACA72060.1| tRNA pseudouridine synthase A [Pseudomonas putida W619]
Length = 284
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 102/241 (42%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E + C GRTD+GV
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVPSVQQALEQALSKVA----NEPITVVCAGRTDAGVHGC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+V R+ + +E + N NLP DI VV P+P + ARF R
Sbjct: 75 GQIVHFDTRA---------NRDERAWTLGTNFNLPHDISVVWSRPMPADFHARFKATARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M AAQ+L+GTHDF C+
Sbjct: 126 YRYVIYNDPIRPAHLAEEVTWNHRP-LDVERMADAAQFLLGTHDFSAFRASQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G E+
Sbjct: 185 HIHHLRVTRHG----------------QMIVLDVRATAFLHHMVRNIAGVLMTIGAG-ER 227
Query: 223 P 223
P
Sbjct: 228 P 228
>gi|326390628|ref|ZP_08212183.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
gi|325993306|gb|EGD51743.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
Length = 244
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 104/235 (44%), Gaps = 42/235 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + + + Y G NYHG+Q Q ++ T+ L KA++K E+ + RTD+GV
Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNA-VTVQEVLQKAIKKVT----GEEVNLIGASRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +K+ P E+ LPY LN+ LP DI VV V + + AR+
Sbjct: 56 HALYQVANFKTNTKI--PAEK-----LPY--ALNSVLPDDIVVVQAKDVEDSFHARYSAK 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ YKY W L I+ M KAA YL+GTHDF G+
Sbjct: 107 RKRYKYIILNRKFQMPTMRNYCWHIDYPLSIEKMKKAASYLIGTHDFSAFKAS--GSSKT 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ R V + + + I + GFL++ +R I+ L VG G
Sbjct: 165 STIRTVYDLTI----------EKDEDFINIEIEANGFLYNMVRIIVGTLSYVGLG 209
>gi|296005181|ref|XP_001351959.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7]
gi|225631808|emb|CAD51770.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 312
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 19/212 (8%)
Query: 10 YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTL 69
Y G ++G Q +DNT+ + LL+ L K LI++ + + + RTD GVSA + L
Sbjct: 13 YFGMEFNGSAYQKDNDNTVENKLLENLYKLELIDNYD-TPLSRVSRTDKGVSARINGINL 71
Query: 70 KIRSKLTS-PGEESDDNELPYLKMLNNNLP-RDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
++ K + P E + + LK N+ DIK V + AR +C+ R Y Y+
Sbjct: 72 RLNIKYENVPIFEIEKKYVKELKKKLKNIHIHDIK-----HVSNTFDARLNCIQRTYVYF 126
Query: 128 FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDS 187
F +I+ M KAA+ +G HDF N CK G V + RR V + + D
Sbjct: 127 FINKNYNIEKMKKAAKLFIGEHDFSNCCKK--GKNVTSNRRTVLKFDIRNI-------DK 177
Query: 188 HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
H F I+ FL++QIR ++++LFLVG+G
Sbjct: 178 H--FYYFKIKGISFLYNQIRHMVAILFLVGKG 207
>gi|329938203|ref|ZP_08287654.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045]
gi|329302692|gb|EGG46582.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045]
Length = 288
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 43/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL+ + +E GRTD+GV A
Sbjct: 12 VRLDLSYDGTGFSGWAKQAGGRRTVQGEIEDALR--TVTRSRETFELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E ++ LK L LPRD++V A P + ARF ++R
Sbjct: 70 GQVAHVDL------PREVWAEHHGKLLKRLAGRLPRDVRVWALREAPAGFDARFSAVWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNEAARGLLGEHDFAAYCKKR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + I +R+ F + +R ++ L VG G+ P
Sbjct: 179 TTIRTL----------QELSLARGGDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRAP 228
Query: 224 E 224
+
Sbjct: 229 D 229
>gi|408529900|emb|CCK28074.1| tRNA pseudouridine synthase A [Streptomyces davawensis JCM 4913]
Length = 281
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 104/246 (42%), Gaps = 38/246 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G +HG+ Q T+ + AL +T + GRTD+GV A
Sbjct: 12 VRLDLSYDGGEFHGWAKQAGGQRTVQGEIEDAL-RTVTRSGETTYELTVAGRTDAGVHAR 70
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + +L +E LK L LP+D++V A + PE ++ARF L+R
Sbjct: 71 GQVAHVDLPEELWGLHQEK------LLKRLAGRLPKDVRVWALTEAPEGFNARFAALWRR 124
Query: 124 YKY------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
Y Y W LD+D M AA+ LVG HDF K G V
Sbjct: 125 YIYRVGDRPGGVDPLLRSHVLWHDWE-LDVDVMDAAAKSLVGEHDFAAYAKKREGASTV- 182
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R + GV + + E +R+ F +Q+R ++ L VG G+ E
Sbjct: 183 --REIFDFGV---------RRTADGVVEIEVRADAFCHNQVRSMVGALLFVGDGHRGVEW 231
Query: 226 IQQLVD 231
++++D
Sbjct: 232 PRKVLD 237
>gi|302336349|ref|YP_003801556.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084]
gi|301320189|gb|ADK68676.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084]
Length = 284
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 44/264 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ +++ Y+G + GF Q T+A L AL+ C GRTD+GV+A
Sbjct: 20 MVVRLGYRGAGFAGFAEQPG-QRTVAGELRTALETLL----HRPVDLTCAGRTDAGVNAL 74
Query: 64 CQVVTLKI-RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
Q V+L + R +L G + L P D+ V +SARFD L R
Sbjct: 75 AQYVSLPVTRGELEREGRR-------LVSSLVALTPDDLSVRGLYKADVSFSARFDALER 127
Query: 123 NYKY----------------WFPQ--AGLDIDAMHKAAQYLVGTHDFRNLCKMNV----- 159
Y+Y W+ + A LD+DAM +AA L+G HDFR+ CK +
Sbjct: 128 GYRYRVACGSARPVLSWGHTWWLRSVADLDVDAMGEAASALLGEHDFRSFCKASSAGLLE 187
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+G RRL SA V+ ++ + ++R FL + +R I L VG+G
Sbjct: 188 ADGRSTCRRL-------SAVSVVRAREAGEELVAIDVRGNAFLHNMVRVIAGTLVEVGRG 240
Query: 220 NEKPE-IIQQLVDIEKYPRKPVYP 242
+ + + L ++ P P
Sbjct: 241 HRDASWVARALAAHDRSAAGPTAP 264
>gi|167032538|ref|YP_001667769.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1]
gi|166859026|gb|ABY97433.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1]
Length = 286
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 21 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPISVICAGRTDAGVHGC 76
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+V R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 77 GQIVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWSQPMPADFHARFKACARR 127
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + LD++ M +AAQ+L+GTHDF C+
Sbjct: 128 YRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAEAAQFLLGTHDFSAFRASQCQAK----- 182
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ + + H VT H + ++R+ FL H +R I VL +G G E+P
Sbjct: 183 -SPIKHIYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAG-ERP 230
>gi|323490654|ref|ZP_08095859.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2]
gi|323395746|gb|EGA88587.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2]
Length = 247
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 41/246 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + I Y G + G+Q+Q S T+ L+K L+ I + GRTD+ V
Sbjct: 1 MKRLKATIAYDGSGFAGYQVQPDS-RTVQLELMKVLET---IHKGKVIQVVASGRTDAKV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV+ ++L+ P + +LK LN LP DI+V + V + AR+
Sbjct: 57 HATGQVIHFD--TELSIP-------IIGWLKALNVLLPEDIRVHSIEEVDTSFHARYHTT 107
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y + ++ LD++AM KA+Q +VGTHDF + C N VV
Sbjct: 108 GKTYRYKWDRSQIISPFTRSLMVHVKQPLDVEAMKKASQAIVGTHDFSSFCAAN--TAVV 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R V + + F + H N I GFL++ +R I L VG G K E
Sbjct: 166 DKVRTV---------RRLDFEE-HGNELHMVIEGTGFLYNMVRIIAGTLAEVGMGRRKAE 215
Query: 225 IIQQLV 230
++ +V
Sbjct: 216 ELEDIV 221
>gi|345018501|ref|YP_004820854.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033844|gb|AEM79570.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
Length = 244
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 108/235 (45%), Gaps = 42/235 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + + + Y G NYHG+Q Q ++ T+ L KA++K E+ + RTD+GV
Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQENAV-TVQEVLQKAIKKVT----GEEVNLIGASRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV + +K+ P E+ LPY LN+ LP DI VV V + + AR+
Sbjct: 56 HALYQVANFRTNTKI--PAEK-----LPY--ALNSVLPDDIVVVQAKDVEDSFHARYSAK 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ YKY W L I+ M KAA YL+GTHDF +G
Sbjct: 107 RKRYKYIILNRKFPMPTMRNYCWHISYPLSIEKMKKAASYLIGTHDFSAFK----ASGSS 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ T +T ++ N+ NI I + GFL++ +R I+ L VG G
Sbjct: 163 KTSTIRTVYDLT-----IEKNEEFINI---EIEANGFLYNMVRIIVGTLSYVGLG 209
>gi|398978114|ref|ZP_10687570.1| pseudouridylate synthase I [Pseudomonas sp. GM25]
gi|398137441|gb|EJM26500.1| pseudouridylate synthase I [Pseudomonas sp. GM25]
Length = 284
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 117/280 (41%), Gaps = 61/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y+G Y G+Q Q++ T+ L KAL K S C GRTD+GV A
Sbjct: 19 VALGVEYKGSRYSGWQRQSTGVPTVQETLEKALSKVA----DSPISLQCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + D + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDT---------QVDRSLKAWVMGANINLPHDISV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYL+GTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 KMHHLRVTRHG----------------KMIVLDIRANAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNL------YHTEF 256
E ++++++ R+ V P L YH EF
Sbjct: 229 VEWMKEVLE----SRERRSGGVTAHPFGLYLVQVEYHDEF 264
>gi|409422919|ref|ZP_11259994.1| tRNA pseudouridine synthase A [Pseudomonas sp. HYS]
Length = 274
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 117/284 (41%), Gaps = 55/284 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL + + C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVASVQQTLEEALSRVA----DSPVTLHCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + G + N NLP DI V +P + ARF + R
Sbjct: 65 GQVVHFDTQAVRSMKG---------WTMGANINLPHDISVSWAKEMPAHFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVV 164
Y+Y W + LD++ M AA+YLVGTHDF + + +
Sbjct: 116 YRYVIYNDQIRPAHLGEEVTWNHRP-LDVERMALAAEYLVGTHDFSAFRAGQCQAKSPIK 174
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
N L H + +IR+ FL H +R I VL +G G PE
Sbjct: 175 NLHHLRV--------------TRHGQMIVLDIRASAFLHHMVRNIAGVLMTIGAGERPPE 220
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEV 268
+++++ R+ V P LY + + ++DE E+
Sbjct: 221 WAREVLE----SRERRAGGVTAHPYGLYLVQVE----YHDEFEL 256
>gi|418471395|ref|ZP_13041218.1| tRNA pseudouridine synthase A [Streptomyces coelicoflavus ZG0656]
gi|371548040|gb|EHN76378.1| tRNA pseudouridine synthase A [Streptomyces coelicoflavus ZG0656]
Length = 284
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 100/241 (41%), Gaps = 43/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL+ + E GRTD+GV A
Sbjct: 12 VRLDLSYDGREFSGWAKQAGGRRTVQGEIEDALR--TVTRSPETYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E ++ + LK L LPRD++V A P ++ARF ++R
Sbjct: 70 GQVAHVDL------PREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNEAARGLLGEHDFAAYCKKR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + I +R+ F + +R ++ L VG G+ P
Sbjct: 179 TTIRTL----------QELSLVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRTP 228
Query: 224 E 224
+
Sbjct: 229 D 229
>gi|325107879|ref|YP_004268947.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305]
gi|324968147|gb|ADY58925.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305]
Length = 278
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 122/289 (42%), Gaps = 44/289 (15%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L + Y G Y+G+Q+Q TI HL +A+ S A GRTD+GV
Sbjct: 4 RNIKLTLSYDGSGYYGWQVQPDRP-TIQEHLERAIGNIT----GTPSRVAGAGRTDTGVH 58
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QV + S + P E + L + LP DI + + + A + +
Sbjct: 59 AIGQVACFRTESNI--PAER-------FRPALQSQLPDDIVIWKSEEAADDFHAGYASRW 109
Query: 122 RNYKYWF-------PQ---------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y+Y PQ LD+DAM++AA LVG HDFR+ + N +
Sbjct: 110 KQYRYLVLNEEIPRPQMRRYATRIGTRLDLDAMNEAASALVGKHDFRSF-ESQFPNKATS 168
Query: 166 FRRL----VTHAGVTSAWQ----NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
R + V A WQ +F + +I + GFL++ +R IM L +G
Sbjct: 169 VRTVLHCRVNEAETCPLWQPGLGGQRFGQAVGRCVYLDIAADGFLYNMVRAIMGTLLKIG 228
Query: 218 QGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEI 266
G+ +++ +E R+ P E L L H E+D +DE+
Sbjct: 229 IGSWPASAGKEV--LEAMDRRVAGPTAPPEGLYLMHVEYDR---DFDEV 272
>gi|302876500|ref|YP_003845133.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|307687172|ref|ZP_07629618.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|302579357|gb|ADL53369.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
Length = 244
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 116/267 (43%), Gaps = 44/267 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G Y G+Q Q +S T+ + KA++ KE C RTDSGV
Sbjct: 1 MRNIKLILEYDGTKYSGWQKQKNS-VTVQGTIEKAIEAIT----KESVELIGCSRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A SK+ P E + +N LP DI +++ VPE + +RF+C
Sbjct: 56 HAKGYTANFFTNSKI--PIER-------FYIAINAKLPEDIVILSSEEVPEDFHSRFNCI 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
++RNY Y P+ L ID M KAA+ VGT+DF N+G V
Sbjct: 107 GKTYCYSVLNRVSYPAMYRNYLYHVPRK-LSIDEMKKAAESFVGTYDFNAF--RNLGTEV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R + V + H +I + GFL++ +R I L VG G ++
Sbjct: 164 ASTVRTIHRIEV----------EEHGDIINILVTGDGFLYNMVRIIAGTLVEVGLGQKRS 213
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLN 250
+ I+ +++ + R RG L+
Sbjct: 214 DQIKVILESKDRNRAGKTAPARGLSLD 240
>gi|325294776|ref|YP_004281290.1| tRNA pseudouridine synthase A [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065224|gb|ADY73231.1| tRNA pseudouridine synthase A [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 250
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 124/280 (44%), Gaps = 49/280 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ I L I Y G NY G+QI TI ++K L++ + RTD+GV
Sbjct: 1 MKNIKLTIEYLGTNYFGWQI-LPEKPTIQGEIIKVLERIL----QHPVKLTGASRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKM---LNNNLPRDIKVVAWSPVPEKYSARF 117
AF QV K + E+P K+ LN LP DIK+++ VP ++ +R
Sbjct: 56 HAFGQVANFKTK------------KEIPLYKLQSALNGLLPPDIKIISVEEVPLEFDSRR 103
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ Y+Y WF LDI M KA ++L+GT DF + K + N
Sbjct: 104 WAKGKRYRYRIFNRKVPSPFEYKRSWFVPYQLDISLMEKAKEFLIGTFDFTSFSKSD-RN 162
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+N R V + + +SH +F + FL H +R +++ L VG+G
Sbjct: 163 VDINPVRTVDNIEIVK-------KESH---IDFIFYGRSFLRHMVRIMVATLVEVGKGKL 212
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTW 261
+PE I+++ EK RK + + L L +DN ++
Sbjct: 213 RPEDIKEIR--EKKNRKFAPFLAPPDGLYLEKVYYDNYSY 250
>gi|14521207|ref|NP_126682.1| tRNA pseudouridine synthase A [Pyrococcus abyssi GE5]
gi|14548295|sp|Q9UZZ3.1|TRUA_PYRAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|5458425|emb|CAB49913.1| truA pseudouridylate synthase I [Pyrococcus abyssi GE5]
gi|380741777|tpe|CCE70411.1| TPA: tRNA pseudouridine synthase A [Pyrococcus abyssi GE5]
Length = 263
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 32/291 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A KI Y G +HGFQ Q + T+ ++KAL + ++ S F RTD GVSA
Sbjct: 3 VAFKIAYDGTRFHGFQRQPNL-RTVEGEIIKALNNSGIM----YSDFKSASRTDRGVSAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV + + ++E M+ N D+ +++ VP+ + RF +
Sbjct: 58 GNVVAI------------TTEDEKALNPMVLNARLEDVWILSAIEVPQDFHPRFWAKSKV 105
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ P GL+++ + + +Q +G HDF +++ + V + R+
Sbjct: 106 YRYYLPSIGLEVEKVKECSQLFLGVHDFSAFSRVDGRDTVRSIDRIEVF----------- 154
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ I I ++ FLW +R I+ L L G G E I+++++ K+ + P
Sbjct: 155 ---TLGPILIIEIEAKSFLWEMVRRIVKALELCGLGRLSCEEIKEMLE-GKFEKSKKVPP 210
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
E L L +++ + + ++ + R++ E + + A +L +MI+
Sbjct: 211 APPEGLLLVDIKYEGIEFPLNDKALKKFKREVEERFRQKIMGAYLLWDMIQ 261
>gi|399116028|emb|CCG18832.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis 14/45]
Length = 268
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 109/244 (44%), Gaps = 42/244 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G +Y G+Q Q + TI L AL K K + C GRTD+GV A
Sbjct: 5 VALGISYDGRDYQGWQTQPNG-LTIQDFLEAALFKFT----NNKVNTICAGRTDTGVHAI 59
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++T E +++ +N +LP I+V VP+++SARF R
Sbjct: 60 GQVVHFD--TEVTRELES-------WVRGVNAHLPDSIRVRWAQEVPDEFSARFSATHRT 110
Query: 124 YKY-----------WFPQAG-----LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y W +AG LDI+ M+ A Q +GTHDF + FR
Sbjct: 111 YVYLLRNERVLSPIWSGRAGWDFHNLDIEGMNIATQSFIGTHDFSS------------FR 158
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
A + ++ F +R+ GFL H +R I+ L VG G K E I
Sbjct: 159 SSQCQASSPIRSLDTLKLEAKGPFLIFTLRANGFLHHMVRNIIGALLYVGMGRFKAEYIS 218
Query: 228 QLVD 231
+L+D
Sbjct: 219 ELID 222
>gi|388548274|ref|ZP_10151525.1| tRNA pseudouridine synthase A [Pseudomonas sp. M47T1]
gi|388273639|gb|EIK93250.1| tRNA pseudouridine synthase A [Pseudomonas sp. M47T1]
Length = 293
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 112/270 (41%), Gaps = 55/270 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL I C GRTD+GV A
Sbjct: 28 IALGVEYKGSRYRGWQRQASGVLTVQQTLEKALS----IVADSPVDLMCAGRTDAGVHAC 83
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV R+ + + N NLP DI V +P + ARF + R
Sbjct: 84 GQVVHFDTRAVRSMKA---------WTMGANINLPHDISVTWAKEMPATFHARFKAIARR 134
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AAQYL+GTHDF C+
Sbjct: 135 YRYVIYNDQIRPAHLGDEITWNHRP-LDVERMAEAAQYLIGTHDFSAFRAGQCQAK---- 189
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + + HA VT H + +IR+ FL H +R I VL +G G
Sbjct: 190 --SPIKQMHHARVT----------RHGKMIVLDIRANAFLHHMVRNIAGVLMTIGAGERP 237
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
E ++++++ R+ V P LY
Sbjct: 238 VEWMREVLE----GRERRAGGVTAHPFGLY 263
>gi|398844100|ref|ZP_10601204.1| pseudouridylate synthase I [Pseudomonas sp. GM84]
gi|398254905|gb|EJN39958.1| pseudouridylate synthase I [Pseudomonas sp. GM84]
Length = 286
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 100/240 (41%), Gaps = 50/240 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E S C GRTD+GV
Sbjct: 21 IALGVEYKGSRYRGWQRQASGVPSVQQALEQALSKVA----NEPISVVCAGRTDAGVHGC 76
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+V + +E + N NLP DI VV P+P + ARF R
Sbjct: 77 GQIVHFDTHAV---------RDERAWTLGTNFNLPHDISVVWSRPMPADFHARFKACARR 127
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + LD++ M +AAQYL+GTHDF C+
Sbjct: 128 YRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAEAAQYLLGTHDFSAFRASQCQAKSPIKH 187
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
++ R+ H + ++R+ FL H +R I VL +G G E+P
Sbjct: 188 IHHLRVTRHG----------------QMIVLDVRATAFLHHMVRNIAGVLMTIGAG-ERP 230
>gi|398862072|ref|ZP_10617685.1| pseudouridylate synthase I [Pseudomonas sp. GM79]
gi|398231346|gb|EJN17337.1| pseudouridylate synthase I [Pseudomonas sp. GM79]
Length = 284
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVA----DSPVSLLCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNDEITWNHRPLDVERMSEAAQYLVGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|398935509|ref|ZP_10666467.1| pseudouridylate synthase I [Pseudomonas sp. GM41(2012)]
gi|398169461|gb|EJM57443.1| pseudouridylate synthase I [Pseudomonas sp. GM41(2012)]
Length = 284
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVA----DSPVSLLCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|348590140|ref|YP_004874602.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
gi|347974044|gb|AEP36579.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
Length = 268
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 108/244 (44%), Gaps = 42/244 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G +Y G+Q Q + TI L AL K K + C GRTD+GV A
Sbjct: 5 VALGISYDGRDYQGWQTQPNG-LTIQDFLEAALFKFT----NHKVNTICAGRTDTGVHAI 59
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV E S + E +++ +N +LP I+V VP+++SARF R
Sbjct: 60 GQVVHFDT--------EVSRELE-SWVRGVNAHLPDSIRVRWAQEVPDEFSARFSATHRT 110
Query: 124 YKY-----------WFPQAG-----LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y W +AG LDI+ M+ A Q +GTHDF + FR
Sbjct: 111 YVYLLRNERVLSPIWSGRAGWDFHNLDIEGMNIATQSFIGTHDFSS------------FR 158
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
A + ++ F +R+ GFL H +R I+ L VG G K E I
Sbjct: 159 SSQCQASSPIRSLDTLKLEAKGPFLIFTLRANGFLHHMVRNIIGALLYVGMGRFKAEYIS 218
Query: 228 QLVD 231
+L+D
Sbjct: 219 ELID 222
>gi|398900393|ref|ZP_10649450.1| pseudouridylate synthase I [Pseudomonas sp. GM50]
gi|398181292|gb|EJM68862.1| pseudouridylate synthase I [Pseudomonas sp. GM50]
Length = 284
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVA----DSPVSLLCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNDEITWNHRPLDVERMAEAAQYLVGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|220928242|ref|YP_002505151.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10]
gi|254789632|sp|B8I814.1|TRUA_CLOCE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219998570|gb|ACL75171.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10]
Length = 245
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 106/249 (42%), Gaps = 45/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G NYHG+QIQ ++ T+ + KAL K E C RTD GV
Sbjct: 1 MRKIRLTIEYDGTNYHGWQIQKNA-KTVQEVIQKALSKLL----GEDVGVTGCSRTDVGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV SK+ PG++ + +NN LP DI + VPE++ AR+
Sbjct: 56 HAYGQVAHFLTDSKI--PGDK-------FSYAINNLLPDDIVIKNSEEVPEEFHARYSAK 106
Query: 121 FRNYKYWF---PQAG-------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y P A L++ M KAA Y G HDF L G V
Sbjct: 107 GKKYRYLIYNSPHASAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDF--LAFQATGGQVR 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG----N 220
+ R + ++ N+ + GFL++ +R I L VG G +
Sbjct: 165 STVREI---------YGMEVYVKEDNMISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHES 215
Query: 221 EKPEIIQQL 229
E P II L
Sbjct: 216 EIPGIIAGL 224
>gi|414153603|ref|ZP_11409926.1| tRNA pseudouridine synthase A [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455001|emb|CCO07830.1| tRNA pseudouridine synthase A [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 250
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 105/247 (42%), Gaps = 41/247 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKA-LQKTCLIEDKEKSSFACCGRTDSG 59
M+ I L + Y G NYHGFQ Q + +L++ L K K+ GRTD+G
Sbjct: 4 MKNIKLTVAYDGTNYHGFQEQRGTGLATVQEVLESTLSKIA----KDTIQVIGAGRTDAG 59
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
V A+ QVV + G E +L M N LP DIKV+ VP + ARF
Sbjct: 60 VHAWGQVVNFR-------SGRWPVPTEKIHLAM-NALLPDDIKVLQAEEVPLDFHARFSA 111
Query: 120 LFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y + LD+ AM + A YLVG+HDF++ G V
Sbjct: 112 TAKTYRYSIYNHRVMSPLHRLYCYHEPRLLDVRAMQEGAAYLVGSHDFKSFQAQ--GTPV 169
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R + A + S + +R GFL++ +R I L +G G P
Sbjct: 170 KDTVRTIYRAEIL----------SEPPLIHLYLRGNGFLYNMVRIITGTLLDIGMGKIPP 219
Query: 224 EIIQQLV 230
+ Q++
Sbjct: 220 SAMAQII 226
>gi|383320001|ref|YP_005380842.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
gi|379321371|gb|AFD00324.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
Length = 269
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 28/235 (11%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+P ALK+ Y G ++ G Q Q T+ L K L + +I+++ + SF+ GRTD+GV
Sbjct: 3 MKP-ALKLAYIGTDFSGSQAQPGK-RTVEGELKKGLIEKGIIDERTRVSFS--GRTDAGV 58
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QVV+ K + D L +++N+ +P+D+ V A + VP+ + R D
Sbjct: 59 HALGQVVSFK-----------ALDERLVEPRIINSVMPKDLWVYASASVPDDFDPRRDAT 107
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
R Y+Y + + + ++ +GTHDF N + G V R + + VT
Sbjct: 108 SRTYRYVLYAPDVVERRIVECSKLFIGTHDFTNFSSVEPGKNPV---RTIKNISVT---- 160
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY 235
++ ++ + FLW+ +R +++ L LVG I+Q++ ++Y
Sbjct: 161 ------KRGDLYIIDVEADSFLWNMVRKMVTGLRLVGSNKRPARWIEQMLRPDEY 209
>gi|383639942|ref|ZP_09952348.1| tRNA pseudouridine synthase A [Streptomyces chartreusis NRRL 12338]
Length = 284
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 100/241 (41%), Gaps = 43/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL+ + E GRTD+GV A
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALR--TVTRSGETYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E ++ LK L LPRD++V A P ++ARF ++R
Sbjct: 70 GQVAHVDL------PREVWAEHNQKLLKRLAGRLPRDVRVWALREAPSGFNARFSAIWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRNHVLWHDWP---LDVDAMNEAARRLLGEHDFAAYCKKR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q ++ I +R+ F + +R ++ L VG G+ P
Sbjct: 179 TTIRTL----------QELRLVKGDDGIITATVRADAFCHNMVRSLIGALLFVGDGHRPP 228
Query: 224 E 224
+
Sbjct: 229 D 229
>gi|398994016|ref|ZP_10696945.1| pseudouridylate synthase I [Pseudomonas sp. GM21]
gi|398133346|gb|EJM22553.1| pseudouridylate synthase I [Pseudomonas sp. GM21]
Length = 284
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVA----DSPVSLLCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGTGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|72163015|ref|YP_290672.1| tRNA pseudouridine synthase A [Thermobifida fusca YX]
gi|71916747|gb|AAZ56649.1| tRNA pseudouridine synthase [Thermobifida fusca YX]
Length = 296
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 39/242 (16%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I Y G ++ G+ Q T+ L AL + I + GRTD+GV A Q
Sbjct: 29 LDISYDGTDFSGWAEQPGR-RTVQGELQAALARVLRIPTPQ---LTVAGRTDAGVHARGQ 84
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V + + + + E++ L L+ L LP D++V A +P P + ARF LFR Y
Sbjct: 85 VAHVDVPASVW----EAEGERL--LRRLAGVLPPDVRVTAVAPAPPGFDARFSALFRRYV 138
Query: 126 YWFPQA-----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
Y A LD+D M++AA L+G HDF C+ G V R
Sbjct: 139 YRVSDAPGGVDPLRRHEVLWHRRPLDVDRMNEAAAALLGEHDFAAYCRKREGASTV--RE 196
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
L Q +++ ++ +++ F + +R ++ L VG G PE Q
Sbjct: 197 L----------QRLEWRRESEHVYAATVQADAFCHNMVRALVGALLAVGDGRRPPEWPAQ 246
Query: 229 LV 230
++
Sbjct: 247 VL 248
>gi|398963183|ref|ZP_10679437.1| pseudouridylate synthase I [Pseudomonas sp. GM30]
gi|398150042|gb|EJM38665.1| pseudouridylate synthase I [Pseudomonas sp. GM30]
Length = 284
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 108/250 (43%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y+G Y G+Q Q + T+ L KAL K S C GRTD+GV A
Sbjct: 19 VALGLEYKGSRYSGWQRQLTGVATVQEELEKALSKVA----NSPVSLQCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + D + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDT---------QVDRSLKAWVMGANINLPHDISV-SWARVMPAHFHARFKAIAR 124
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYL+GTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRP-LDVERMAQAAQYLIGTHDFSAFRAGQCQAKSPI 183
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 184 KKMHHLRVTRHG----------------KMIVLDIRANAFLHHMVRNIAGVLMTIGAGER 227
Query: 222 KPEIIQQLVD 231
E ++++++
Sbjct: 228 PVEWMKEVLE 237
>gi|330446609|ref|ZP_08310261.1| tRNA pseudouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490800|dbj|GAA04758.1| tRNA pseudouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 261
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 111/271 (40%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G Y+G+Q Q D ++ L KAL K + C GRTD+GV
Sbjct: 3 IALGVEYDGAKYYGWQRQRDVD-SVQERLEKALSKVA----NQPIEVFCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + D + + N NLP+DI V + V E + ARF R
Sbjct: 58 GQVVHFDV---------NIDRKMVAWTMGANANLPKDIAVRWATEVSEDFHARFTATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIFNNALRPAILGTGVSHYHGHLDEKKMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQF--NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ + +I++ F+ H +R I L VG+G EKPE
Sbjct: 157 --AVHCQSRSPWRNLMHLKVTRQGDFVIIDIKANAFVHHMVRNITGSLIKVGKGEEKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L +E+ R + E L L ++
Sbjct: 215 IKWL--LEQKDRTLAGATAKAEGLYLVDVDY 243
>gi|205372037|ref|ZP_03224854.1| tRNA pseudouridine synthase A [Bacillus coahuilensis m4-4]
Length = 251
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 48/276 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + Y G Y G+Q+Q +S TI + K L+K + + GRTD+GV
Sbjct: 4 MRRIKCTVQYDGTWYAGYQVQPNS-KTIQGEIEKVLEKI----HGKPIRISASGRTDAGV 58
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV +K P E+ +L + N+ LP DI V+ V + +RF +
Sbjct: 59 HAIGQVFHFDTDTKF--PVEK-------WLPIFNSQLPNDIVVIHVEEVAGSFHSRFGSI 109
Query: 121 FRNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLC--KMNVGNG 162
+ Y+Y +A L + M +A++YL+GTHDF + C K V +
Sbjct: 110 EKEYRYKVYRAPHKSPFLIHHAYHVPHSLSVQKMEEASRYLLGTHDFTSFCSAKTEVEDK 169
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V R + T + + N+ F++ GFL++ +R I+ VL VGQG
Sbjct: 170 V---RTIFTIS-----------IEEEENMLTFSLVGNGFLYNMVRIIIGVLIEVGQGKRA 215
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
P ++++ +E R+ + L LY ++ N
Sbjct: 216 PIEVKEI--LEAKDRRAGGKTAPAQGLYLYRVKYSN 249
>gi|229083731|ref|ZP_04216052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44]
gi|228699589|gb|EEL52253.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44]
Length = 268
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 106/250 (42%), Gaps = 41/250 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M I Y G Y G+Q ++DNTI + L + ++ C RTD+GV
Sbjct: 24 MNNYKFTIQYDGARYKGWQRLGNNDNTIQGKIESVLSEMV----GQEIEIIGCSRTDAGV 79
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV KI KL+ P + K LN LP DI + VPE++ AR++
Sbjct: 80 HALNQVANFKIEEKLSEPKVK---------KYLNQYLPNDISITDVEQVPERFHARYNSK 130
Query: 121 FRNYKY--W--------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y W Q L+I++M KAAQYL+G+HDF N
Sbjct: 131 AKTYLYKIWNEEHTNPFMRKYSMHVQKKLNIESMQKAAQYLIGSHDFTAFS-----NAKS 185
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ +V + ++ F + + GFL + +R I+ L VG G +
Sbjct: 186 KKKSMVREVYMLDVAESEGF-------IQIRVSGNGFLHNMVRKIVGALVEVGLGQLDAD 238
Query: 225 IIQQLVDIEK 234
I Q+++ ++
Sbjct: 239 AIPQILEAKQ 248
>gi|326932368|ref|XP_003212291.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Meleagris
gallopavo]
Length = 292
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 10 YQGFNYHGFQIQTSSDNT---IAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQV 66
Y G Y G + TS++ + + ++L KA Q ++ F RTDSGV A C
Sbjct: 14 YWGTKYSGV-MHTSAEQSGVGVQNYLEKAAQN---LKPVVPIKFHISSRTDSGVHALCNS 69
Query: 67 VTLKIRSKLTSPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYK 125
L I+ +PG+ + ++ + LN++L P I++++ V + ARF L R Y
Sbjct: 70 AHLDIQR---APGKPAFQEKM-LIGCLNHHLKPEPIRILSAYRVTNNFHARFSALSRTYI 125
Query: 126 Y--------------------WFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
Y W P G L++ AM AAQ+L+GTHDF C +N
Sbjct: 126 YRLLMGCTHHSEIPVFERDLCWAPTGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETPFR 185
Query: 165 NFRRLVTHAGV--TSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + + A + +S + + + E +S+ FL+ Q+R ++ L VGQG
Sbjct: 186 SPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKLA 245
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
P I++L++++ P + M L L E++
Sbjct: 246 PYHIKELLEMKDARAFPPFAMAPSSGLFLKSVEYN 280
>gi|407362657|ref|ZP_11109189.1| tRNA pseudouridine synthase A [Pseudomonas mandelii JR-1]
Length = 274
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVA----DSPVSLLCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QVERSMKAWVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVGTHDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGTHDFSAFRAGQCQAKSPIK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 175 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 218
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 219 VEWMKEVLE 227
>gi|157374791|ref|YP_001473391.1| tRNA pseudouridine synthase A [Shewanella sediminis HAW-EB3]
gi|189030145|sp|A8FTU0.1|TRUA_SHESH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157317165|gb|ABV36263.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3]
Length = 261
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 112/249 (44%), Gaps = 48/249 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G Y G+Q Q D+ A L +AL K E C GRTD+GV A
Sbjct: 3 VALGIEYDGRQYFGWQRQAEVDSVQAQ-LERALSKVA----NEPIRVHCAGRTDAGVHAT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + + +N NLP DI V V +++ ARF R
Sbjct: 58 GQVVHFETNAI---------RKDSAWTLGVNVNLPDDIAVRWVKIVDDEFHARFSATARR 108
Query: 124 YKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + +D D MH+AAQ VG HDF +FR
Sbjct: 109 YRYMIYNYDFRPGILRSGVSHYRGNIDADIMHQAAQQFVGEHDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN--ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
L H + +++V + N + IC +I++ FL H +R I+ L +G GN++PE
Sbjct: 157 AL--HCQSKTPFRSVHEVNVTRQGMYIC-VDIKANAFLHHMVRNIVGTLLEIGLGNQRPE 213
Query: 225 IIQQLVDIE 233
I QL+D++
Sbjct: 214 WIPQLLDLK 222
>gi|343496416|ref|ZP_08734513.1| tRNA pseudouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
gi|342821198|gb|EGU55989.1| tRNA pseudouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
Length = 263
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 118/274 (43%), Gaps = 54/274 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q + + + L+K+ I C GRTD+GV
Sbjct: 3 IALGIEYDGAKYFGWQRQREVAS-----VQEKLEKSLSIVANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVV---TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV T +R + + +N N+P+DI V VP+++ ARF
Sbjct: 58 GQVVHFETTAVRKMVA------------WTMGVNANMPKDIAVRWAKEVPDEFHARFSAT 105
Query: 121 FRNYKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R Y+Y + P LD MH A QYL+G +DF
Sbjct: 106 ARRYRYVIYNHAYRPGILSSGISHYHGDLDEKKMHLAGQYLLGENDF------------T 153
Query: 165 NFRRLVTHAGVTSAWQNV-QFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+FR + + S W+N+ N S H N +I++ F+ H +R I L VG+GN++
Sbjct: 154 SFRAVQCQS--RSPWRNIMHLNVSRHGNYVVIDIKANAFVHHMVRNITGSLIEVGRGNQE 211
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
PE I+ L +E R+ + E L L ++
Sbjct: 212 PEWIKWL--LEAKDRRLAGATAKAEGLYLVDVDY 243
>gi|87308089|ref|ZP_01090231.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645]
gi|87289171|gb|EAQ81063.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645]
Length = 260
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 112/249 (44%), Gaps = 38/249 (15%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + L + Y G NY G+QIQ + AL++T L EK GRTDSGV
Sbjct: 7 RALQLIVSYDGTNYAGWQIQNDQRT-----IQGALERTLLKITGEKIRVTGSGRTDSGVH 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKV-VAWSPVPE--------- 111
A QVV+ +++S+L SP + LN LP DI V A + +PE
Sbjct: 62 AIGQVVSFRMQSQL-SPD--------VMRRALNAELPPDIVVQSARNAIPEFNAIDCAIK 112
Query: 112 ---KY---SARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+Y R D +F WF + L+ AM AAQ+L+G HDF + V
Sbjct: 113 KRYRYLLQEGRIDDVFSRQYAWFVKKELNFAAMQAAAQHLIGEHDFASFES-------VG 165
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R+ T V Q ++ + + + GFL++ +R I+ L VG+G PE
Sbjct: 166 SERMTTVRHVFDV-QVLRSERHEFDKVAIEVEANGFLYNMVRIIVGTLVDVGKGRRPPEW 224
Query: 226 IQQLVDIEK 234
+ +++ +K
Sbjct: 225 VAEVLAAKK 233
>gi|59712303|ref|YP_205079.1| tRNA pseudouridine synthase A [Vibrio fischeri ES114]
gi|197334265|ref|YP_002156517.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11]
gi|62901138|sp|Q5E455.1|TRUA_VIBF1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238690294|sp|B5FFN7.1|TRUA_VIBFM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|59480404|gb|AAW86191.1| pseudouridylate synthase I [Vibrio fischeri ES114]
gi|197315755|gb|ACH65202.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11]
Length = 262
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 120/291 (41%), Gaps = 53/291 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q N++ L KAL I E C GRTD+GV
Sbjct: 3 IALCIEYDGAEYYGWQRQRDV-NSVQEELEKALT----IVANEPIEVHCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRS--KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV S KL + ++ N NLP++I V V E + ARF
Sbjct: 58 GQVVHFDTTSSRKLAA-----------WMMGANANLPKNIAVRWAKEVNEDFHARFTATA 106
Query: 122 RNYKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y LD + MH+A QYL+G +DF +
Sbjct: 107 RRYRYIIYNNRLRPAILGHGVSHYHDALDANLMHEAGQYLLGENDF------------TS 154
Query: 166 FRRLVTHAGVTSAWQNVQF--NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
FR H S W+N+ H + +I++ F+ H +R I L VG+G +KP
Sbjct: 155 FR--AVHCQSRSPWRNLMHLKVTRHGDFIVIDIKANAFVHHMVRNITGSLIEVGKGKQKP 212
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRD 274
E I+ L +E RK + E L L ++ L W + + + D
Sbjct: 213 EWIKWL--LEAKDRKLAGATAKAEGLYLVDVDYP-LEWELPRVPLGPLFLD 260
>gi|425898623|ref|ZP_18875214.1| tRNA pseudouridine synthase A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397891285|gb|EJL07763.1| tRNA pseudouridine synthase A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 274
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 121/287 (42%), Gaps = 61/287 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L KAL + +C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVPSVQETLEKALSRVA----DSPVLLSCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDISV-SWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYLVGTHDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDVERMAEAAQYLVGTHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KEIHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGER 217
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEV 268
E +++++ R V P LY + + ++DE E+
Sbjct: 218 PVEWAREVLE----SRIRRTGGVTAHPFGLYLVQVE----YHDEFEL 256
>gi|77458123|ref|YP_347628.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf0-1]
gi|77382126|gb|ABA73639.1| pseudouridylate synthase I [Pseudomonas fluorescens Pf0-1]
Length = 274
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 118/281 (41%), Gaps = 63/281 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y+G Y G+Q Q++ T+ L KAL K S C GRTD+GV A
Sbjct: 9 VALGVEYKGSRYSGWQRQSTGVLTVQETLEKALSKVA----DSPISLQCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + D + ++ N NLP DI V +W+ + P + ARF + R
Sbjct: 65 GQVVHFDT---------QVDRSLKAWVMGANINLPHDISV-SWAKIMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYL+GTHDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDVERMAEAAQYLIGTHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KQMHHLRVTRHG----------------KMIVLDIRANAFLHHMVRNIAGVLMTIGAGER 217
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL------YHTEF 256
E ++++++ R+ V P L YH EF
Sbjct: 218 PVEWMKEVLE----SRERRSGGVTAHPFGLYLVQVEYHDEF 254
>gi|325276985|ref|ZP_08142659.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51]
gi|324097881|gb|EGB96053.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51]
Length = 286
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 103/241 (42%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL K E + C GRTD+GV
Sbjct: 21 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVA----NEPIAVVCAGRTDAGVHGC 76
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV R+ +E + N NLP DI VV P+P + ARF R
Sbjct: 77 GQVVHFDTRAV---------RDERAWTMGTNFNLPHDISVVWSQPMPADFHARFKACARR 127
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AAQ L+GTHDF C+
Sbjct: 128 YRYVIYNDPIRPAHLAEEVTWNHRP-LDVERMAQAAQSLLGTHDFSAFRASQCQAK---- 182
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + + H VT H + ++R+ FL H +R I VL +G G E+
Sbjct: 183 --SPIKHIYHLRVT----------RHGQMIVLDVRATAFLHHMVRNIAGVLMAIGSG-ER 229
Query: 223 P 223
P
Sbjct: 230 P 230
>gi|157690932|ref|YP_001485394.1| tRNA pseudouridine synthase A [Bacillus pumilus SAFR-032]
gi|166991159|sp|A8F9B7.1|TRUA_BACP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157679690|gb|ABV60834.1| tRNA-pseudouridine synthase I [Bacillus pumilus SAFR-032]
Length = 247
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 109/240 (45%), Gaps = 42/240 (17%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G ++ G+Q+Q T+ + AL K + + E GRTDSGV A QV+
Sbjct: 7 VSYDGTHFKGYQVQ-PGQRTVQTEIESALAK--MHKQDELVPIVASGRTDSGVHAKGQVI 63
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
+ L+ P E P+ LN+ LP DI+V+ V E + ARF + + Y+Y
Sbjct: 64 HFD--TPLSIPMER-----WPF--ALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYK 114
Query: 127 ----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
FP LD D M +AA YL+GTHDF + C N V + R +
Sbjct: 115 VSTETHQNVFTRQYACHFPYR-LDADKMREAAGYLIGTHDFTSFCAAN--TEVQDKVREI 171
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
T W+NV + E +R GFL++ +R I L VG G P+ I+ ++
Sbjct: 172 ----YTLEWKNVS------DGLEMRVRGNGFLYNMVRIIAGTLLEVGSGKFHPDEIKAML 221
>gi|20808627|ref|NP_623798.1| tRNA pseudouridine synthase A [Thermoanaerobacter tengcongensis
MB4]
gi|24212532|sp|Q8R7Y7.1|TRUA_THETN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20517260|gb|AAM25402.1| Pseudouridylate synthase (tRNA psi55) [Thermoanaerobacter
tengcongensis MB4]
Length = 240
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 109/242 (45%), Gaps = 46/242 (19%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I Y G NYHG+Q Q ++ T+ L KA++K EK + RTD+GV A Q
Sbjct: 2 LIIEYDGTNYHGWQYQKNAI-TVQEVLEKAIEKVT----GEKVNLIGSSRTDTGVHALYQ 56
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V K ++K+ P E+ LPY LN LP D+ VV V + + AR+ + Y+
Sbjct: 57 VANFKTKTKI--PPEK-----LPY--ALNAVLPDDVVVVKAKEVDKSFHARYSARSKRYR 107
Query: 126 Y----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
Y W LD++AM KAA + GTHDF GN VN +
Sbjct: 108 YLILNRQFPMPTMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAFKAS--GNKKVNPVKT 165
Query: 170 VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG----NEKPEI 225
+ V + ++ + + + GFL++ +R I+ L VG G E P I
Sbjct: 166 IFDLTV----------EKEGDLIKIEVEADGFLYNMVRIIVGTLVYVGLGKIKAGEIPAI 215
Query: 226 IQ 227
I+
Sbjct: 216 IE 217
>gi|260769069|ref|ZP_05878003.1| tRNA pseudouridine synthase A [Vibrio furnissii CIP 102972]
gi|375131636|ref|YP_004993736.1| tRNA pseudouridine synthase A [Vibrio furnissii NCTC 11218]
gi|260617099|gb|EEX42284.1| tRNA pseudouridine synthase A [Vibrio furnissii CIP 102972]
gi|315180810|gb|ADT87724.1| tRNA pseudouridine synthase A [Vibrio furnissii NCTC 11218]
Length = 264
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 114/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q N++ L KAL + C GRTD+GV
Sbjct: 3 IALGIEYDGTQYYGWQRQREV-NSVQEELEKALS----VIANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + N NLP++I V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------TATRKMIAWTMGANANLPKNIAVRWAKEVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD+ MH+A Q+L+G +DF +FR
Sbjct: 109 YRYVIYNHMFRPGILATGVSHYHGELDVARMHQAGQFLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ + H +I++ F+ H +R I L VG+G ++PE
Sbjct: 157 --AVHCQSRSPWRNIMHLNVTRHERYVVIDIKANAFVHHMVRNITGSLIAVGRGEQEPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
IQ L +E RK + E L L ++
Sbjct: 215 IQWL--LEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|398852822|ref|ZP_10609463.1| pseudouridylate synthase I [Pseudomonas sp. GM80]
gi|398242799|gb|EJN28404.1| pseudouridylate synthase I [Pseudomonas sp. GM80]
Length = 318
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 106/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y+G Y G+Q Q + T+ L KAL K S C GRTD+GV A
Sbjct: 53 VALGVEYKGSRYSGWQRQLTGVKTVQEELEKALSKVA----NSPVSLQCAGRTDAGVHAC 108
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV D + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 109 GQVVHFDT---------TVDRSLKAWVMGANINLPHDISV-SWARVMPAHFHARFKAIAR 158
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYL+GTHDF C+
Sbjct: 159 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQCQAKSPIK 218
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 219 KMHHLRVTRHG----------------KMIVLDIRANAFLHHMVRNIAGVLMTIGAGERP 262
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 263 VEWMKEVLE 271
>gi|118602946|ref|YP_904161.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567885|gb|ABL02690.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 247
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 122/276 (44%), Gaps = 51/276 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G N+HG+Q Q + T+ + +AL + + F C GRTD+GV A
Sbjct: 3 IALGVAYLGTNFHGWQCQKPNIRTVQQVVEQALSS---VANHPVRVF-CSGRTDAGVHAT 58
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
CQV+ + K +N++ +L N NLP D+ V + + ARF + R
Sbjct: 59 CQVIHFETNIK--------RENKV-WLFGGNANLPSDVNFTWVKHVNDNFHARFSAIARQ 109
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFR----NLCKMNVGNGV 163
Y Y + LDI AM+KA++YL+G H+F +LC+
Sbjct: 110 YNYKIHNTKVRCSIITAHSLWESKKLDIMAMNKASKYLIGKHNFSAFRGSLCQAKSSIKT 169
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F ++ N NI +I++ FL H +R I+ L VG+G +
Sbjct: 170 IEF---------------IKLNKCDDNIL-LDIKADAFLHHMVRNIVGTLLKVGKGEKSI 213
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
E +++++D ++ RK P L + NL
Sbjct: 214 EWVKEILDNKQ--RKQAAPAAPSHGLYFIKAFYSNL 247
>gi|89073216|ref|ZP_01159746.1| tRNA pseudouridine synthase A [Photobacterium sp. SKA34]
gi|89050926|gb|EAR56390.1| tRNA pseudouridine synthase A [Photobacterium sp. SKA34]
Length = 261
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 104/245 (42%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G Y+G+Q Q D ++ L KAL K + C GRTD+GV
Sbjct: 3 IALGVEYDGAKYYGWQRQRDVD-SVQERLEKALSKVA----NQPVEVFCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +I D + + N +LP+DI V + V E + ARF R
Sbjct: 58 GQVVHFEI---------NIDRKIVAWTMGANAHLPKDIAVRWATEVSEDFHARFTATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+A QYL+G +DF + M
Sbjct: 109 YRYIIFNNALRPAILGNGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAM---------- 158
Query: 168 RLVTHAGVTSAWQN-VQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N + N + + +I++ F+ H +R I L VG+G EKPE
Sbjct: 159 ----HCQSRSPWRNLIHLNVTRQGDFVIIDIKANAFVHHMVRNITGSLIKVGKGEEKPEW 214
Query: 226 IQQLV 230
I+ L+
Sbjct: 215 IEWLL 219
>gi|148977676|ref|ZP_01814237.1| tRNA pseudouridine synthase A [Vibrionales bacterium SWAT-3]
gi|145963044|gb|EDK28313.1| tRNA pseudouridine synthase A [Vibrionales bacterium SWAT-3]
Length = 264
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 113/271 (41%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y G+Q Q + + + L+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTHYFGWQRQRDVKS-----VQEELEKALSVVANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + D + + N N+P+DI V + V E + ARF R
Sbjct: 58 GQVVHFET---------NVDRKMVAWTMGANANMPKDIAVRWATEVNEDFHARFSATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIFNHALRPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQN-VQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N + N + H + +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --ATHCQSHSPWRNMIHLNVTRHGHYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L +E RK + E L L ++
Sbjct: 215 IKWL--LEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|229523210|ref|ZP_04412617.1| tRNA pseudouridine synthase A [Vibrio cholerae TM 11079-80]
gi|229339573|gb|EEO04588.1| tRNA pseudouridine synthase A [Vibrio cholerae TM 11079-80]
Length = 264
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 107/245 (43%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y+G+Q Q + + +AL+K+ C GRTD+GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREVKS-----VQEALEKSLSKIANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV ++ + + N NLP+DI V VP+++ ARF R
Sbjct: 58 GQVVHFDT---------TAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARR 108
Query: 124 YKY------WFP----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + P LD++ M +A QYL+G +DF +FR
Sbjct: 109 YRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV N + H +I++ F+ H +R I L VG G +KPE
Sbjct: 157 --AVHCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGCGEQKPEW 214
Query: 226 IQQLV 230
IQ L+
Sbjct: 215 IQWLL 219
>gi|83591242|ref|YP_431251.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073]
gi|123766692|sp|Q2RFT1.1|TRUA_MOOTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|83574156|gb|ABC20708.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073]
Length = 246
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 44/270 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDN-TIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSA 62
+ + + Y G NY G+Q+Q + T+ + AL++ E+ + GRTD+GV A
Sbjct: 4 LKITLAYDGSNYAGWQVQPEAHGPTVQGEVAAALKRL----TGEEITPVAAGRTDAGVHA 59
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV++ R+++ P E + LN+ LP DI + V + AR+ +
Sbjct: 60 RGQVISFSTRARI--PVER-------WPLALNSVLPADIAALEAVEVAPDFHARYCAKRK 110
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y+Y W + LD+ AM +AA YL G HDFR+ C G+ V +F
Sbjct: 111 WYRYTIYNNRVPDVFCRRYSWHLRQPLDVIAMARAAAYLQGCHDFRSFCA--AGSPVRHF 168
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
R V A V+ QN F F++ + GFL+H +R ++ L +G+ PE I
Sbjct: 169 ERQVQQASVS---QNGPF-------IYFDVIADGFLYHMVRIMVGTLVEIGRRRLVPEAI 218
Query: 227 QQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
++ R+ P L L E+
Sbjct: 219 PAILAARS--REKAGPTAPARGLCLERVEY 246
>gi|354559009|ref|ZP_08978261.1| tRNA pseudouridine synthase A [Desulfitobacterium metallireducens
DSM 15288]
gi|353544179|gb|EHC13634.1| tRNA pseudouridine synthase A [Desulfitobacterium metallireducens
DSM 15288]
Length = 245
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 45/273 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + L I Y G Y G+Q Q +D TI + L K E CGRTDSGV
Sbjct: 1 MRNLKLTIAYDGSRYKGWQKQKDNDLTIQGKIETVLSKMT----GESILLVGCGRTDSGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A + + L SP E D L LP DI V + + E++ AR+
Sbjct: 57 HAENYIANFHTKCAL-SPNEIVD--------YLYEYLPEDIVVKSIDEIAERFHARYNVK 107
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
D R Y Y L++ M A++ L+GTHDF++
Sbjct: 108 SKTYVYRINTDKFRDVFNRKYTYHLADK-LNLREMKSASEVLIGTHDFQSFT-------- 158
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
N + T + N+ D + E + GFLW+ +R I+ L VG+GN KP
Sbjct: 159 -NLKSRDKSTIRTINYINIGEQDG---LLEIEVNGNGFLWNMVRIIVGTLLEVGKGNLKP 214
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
++++++ +K R P+ + + L L ++
Sbjct: 215 SDVEKILNEKK--RWEAGPLAQAKGLFLKDVQY 245
>gi|443472803|ref|ZP_21062829.1| tRNA pseudouridine synthase A [Pseudomonas pseudoalcaligenes KF707]
gi|442903245|gb|ELS28658.1| tRNA pseudouridine synthase A [Pseudomonas pseudoalcaligenes KF707]
Length = 286
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 102/249 (40%), Gaps = 50/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y GFQ Q +I L KAL + + +C GRTD+ V A
Sbjct: 20 IALGVEYKGSRYRGFQRQIKGVPSIQEALEKALGR---VAGGAPVVLSCAGRTDAMVHAS 76
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +P S+ ++ N NLP DI V +P + ARF + R
Sbjct: 77 GQVV------HFDTPVARSEHT---WIMGANANLPNDISVTWAKAMPRHFDARFSAMARR 127
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI M +AA+ LVGTHDF C+
Sbjct: 128 YRYVIYNDPIRPAHLAEEVTWNHRP-LDIQRMREAARCLVGTHDFSAFRARQCQAKSPVK 186
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V+ L+ H + +IR+ FL H +R I VL +G G
Sbjct: 187 TVHHLELIEHG----------------RMIVLDIRANAFLHHMVRNISGVLMTIGAGERP 230
Query: 223 PEIIQQLVD 231
E QQ+++
Sbjct: 231 EEWAQQVLE 239
>gi|399013571|ref|ZP_10715875.1| pseudouridylate synthase I [Pseudomonas sp. GM16]
gi|398113346|gb|EJM03194.1| pseudouridylate synthase I [Pseudomonas sp. GM16]
Length = 284
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 106/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y+G Y G+Q Q + T+ L KAL K S C GRTD+GV A
Sbjct: 19 VALGVEYKGSRYSGWQRQLTGVATVQEELEKALSKVA----NSPVSLQCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV D + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDT---------TVDRSLKAWVMGANINLPHDISV-SWARVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYL+GTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 KMHHLRVTRHG----------------KMIVLDIRANAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|336430376|ref|ZP_08610324.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336018360|gb|EGN48109.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 257
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 117/278 (42%), Gaps = 50/278 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED-KEKSSFACCGRTDSG 59
M+ + L + Y G NYHG+Q+Q+ N I+ ++ + CL E KE RTDSG
Sbjct: 1 MKRVMLTVAYDGTNYHGWQLQS---NGIS---IEEVLNRCLTELLKEPVQVIGASRTDSG 54
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
V AF + ++++ PG++ + LN LP DI++ VP + R
Sbjct: 55 VHAFGNIAVFDTQARM--PGDK-------FSYALNQRLPEDIRIRGSREVPLTFHPRKTD 105
Query: 120 LFRNYKYW-----FPQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y FP LD M++ A++L+G HDF++ C +N
Sbjct: 106 SIKTYEYRILNEEFPNPVKRLYSHFTYLPLDEKKMNEGAKFLIGEHDFKSFCSVN----- 160
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIR--SQGFLWHQIRCIMSVLFLVGQGNE 221
A V S + + + E IR GFL++ +R I L VG G
Sbjct: 161 ---------AQVESTVRTIYSCEVQREGTELVIRISGGGFLYNMVRIIAGTLMDVGNGKY 211
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
PE + ++ ++ R P L L EF L
Sbjct: 212 PPETVADILKAKE--RTAAGPTAPARGLTLISYEFPEL 247
>gi|345862115|ref|ZP_08814350.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
gi|344324730|gb|EGW36273.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
Length = 245
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 119/272 (43%), Gaps = 43/272 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + + I + G Y G+Q Q +D TI + L K E CGRTDSGV
Sbjct: 1 MRNLKMTIAFDGSKYKGWQRQKENDLTIQGKIEAVLSKMT----GEDIQIVGCGRTDSGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A + +S ++ N + L L LP DI V + V E++ AR++ +
Sbjct: 57 HAENYIANFHTKSTFST-------NRM--LDYLYEYLPEDIGVKSIEDVAERFHARYNVI 107
Query: 121 FRNY---------------KYWFPQA-GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y KY + A L++ M KA++ L+GTHDF++
Sbjct: 108 SKTYVYRMNTNKFRDVFNRKYAYHLAEKLNLVEMRKASEVLIGTHDFQSYT--------- 158
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
N R T + N+ + H I + GFLW+ +R I+ L VG+GN KP
Sbjct: 159 NSRNSDKSTIRTINYINIIEKEGHLAI---EVNGNGFLWNMVRIIVGTLIEVGKGNLKPV 215
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+++++D K R P+ + + L L ++
Sbjct: 216 DVEKILD--KKKRWEAGPLAQAKGLYLKDVQY 245
>gi|312136442|ref|YP_004003779.1| tRNA pseudouridine synthase a [Methanothermus fervidus DSM 2088]
gi|311224161|gb|ADP77017.1| tRNA pseudouridine synthase A [Methanothermus fervidus DSM 2088]
Length = 277
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 28/234 (11%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ IALK+ Y G ++ GFQ Q T+ L+KAL +T ++++ + F GRTD GV
Sbjct: 1 MKKIALKVAYIGTHFFGFQRQPDL-RTVEGELIKALVETGILDESGVARFRSAGRTDKGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A VVT +D++ + + +N+ LP D+ ++ + VP + R+
Sbjct: 60 HALGNVVTFF-----------TDEDVI--INQINSCLPDDVYILGKASVPYGFKTRYAYR 106
Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
P GL+I+ M +A++ G HDF NF R V +
Sbjct: 107 RHYRYV-LPNDGLNIELMKEASKKFEGRHDF------------TNFSRRVEERNPIRYIE 153
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEK 234
V D I ++ + FLW +R ++ VLF +G+ +PE I + +D E+
Sbjct: 154 KVDVVDKGEYIW-VDVIGESFLWQMVRKMVKVLFDIGKEEYEPEKIDEFLDTEE 206
>gi|288554758|ref|YP_003426693.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4]
gi|288545918|gb|ADC49801.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4]
Length = 247
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 109/242 (45%), Gaps = 41/242 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M IA I Y G N+ G+Q+Q + T+ + +AL++ + ++ S GRTD+GV
Sbjct: 1 MNRIACIISYDGTNFSGYQVQPNK-RTVQLEIEQALKR---VHKGQEVSVTASGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV+ S P + + K LN LP DI+V++ + + AR+
Sbjct: 57 HAKGQVIHFD--SPFRIPAAQ-------WPKALNACLPDDIRVLSAHYAEKDFHARYHTT 107
Query: 121 FRNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y A LDID M +AA YL+GTHDF C N V+
Sbjct: 108 GKEYRYRVLNAEDPDVFRRHHTAHVLYALDIDKMRQAAAYLIGTHDFSAFCAAN--TSVI 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + + NV ++ H F +R GFL++ +R I+ L VG G E
Sbjct: 166 DKVRTLYAVDI-----NVHEDELH-----FILRGNGFLYNMVRIIVGTLLEVGYGKRTAE 215
Query: 225 II 226
+
Sbjct: 216 SV 217
>gi|310644170|ref|YP_003948929.1| tRNA pseudouridine synthase a [Paenibacillus polymyxa SC2]
gi|309249121|gb|ADO58688.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa SC2]
gi|392304868|emb|CCI71231.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa M1]
Length = 261
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 112/273 (41%), Gaps = 34/273 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + +K+ Y G +Y GFQ Q S NTI L A+ E+ GRTD+GV
Sbjct: 1 MRNLCMKVNYDGTHYDGFQTQPSG-NTIQDCLENAIYSLT----GERLKITGSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV S + P + LN LPRDI V VP + AR
Sbjct: 56 HAYGQVFNFHTESPI--PIHR-------WCLALNAWLPRDIIVTDAREVPLSFHARRMAK 106
Query: 121 FRNYKY-----WFPQ-----------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y FP LD+ AM K +LVGT D+ + +
Sbjct: 107 RKTYRYSINANRFPDIFHRRTQAHHPTNLDVRAMEKGLAHLVGTFDYTSFASRR--SQKT 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
N R + A +T + I I GFL H +R IM L VG+G + P+
Sbjct: 165 NHVRTIYEAYITVDHSFSRPGSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSPD 224
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I +++ + R P G L L++ E++
Sbjct: 225 DIPSILEAKN--RSKAGPTAVGHALTLWNVEYE 255
>gi|104780847|ref|YP_607345.1| tRNA pseudouridine synthase A [Pseudomonas entomophila L48]
gi|95109834|emb|CAK14539.1| tRNA-pseudouridine synthase I [Pseudomonas entomophila L48]
Length = 284
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L +AL E + C GRTD+GV
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVPSVQQALEQALSTVA----NEPITVVCAGRTDAGVHGC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+V R+ +E + N NLP DI VV +P+P + ARF R
Sbjct: 75 GQIVHFDTRAV---------RDERAWTLGTNFNLPHDISVVWSAPMPAHFHARFKATARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD+ M +AA+YL+GTHDF C+
Sbjct: 126 YRYVIYNDPIRPAHLAEEVTWNHRP-LDVTRMAEAARYLLGTHDFSAFRASQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G
Sbjct: 185 HIHHLRVTRHG----------------QMIVLDVRATAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 229 VEWAREVLE 237
>gi|431792517|ref|YP_007219422.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430782743|gb|AGA68026.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 269
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 111/268 (41%), Gaps = 40/268 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALKI Y G +YHGFQ Q L+++ + +E + GRTD GV
Sbjct: 11 RNIALKIAYDGTHYHGFQRQPEFHGPTVQGSLESVWAKLV---EEVVTLNTAGRTDRGVH 67
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV + +++ + ++P K +N+ LPRDI+VV V + + ARF +
Sbjct: 68 ATGQVVNFRTAARIPA-------AKIP--KAMNSLLPRDIRVVDAQEVADSFHARFSARW 118
Query: 122 RNYKYWFPQ----------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y Y LD M +AAQ +VG H+F+ +VG
Sbjct: 119 KRYDYEIDNHTIADVFKRLYSVHVPVPLDWQRMQQAAQLMVGRHNFKAFS--SVGGNSKT 176
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
F R + VT H GFL++ +R I L VG+ PE
Sbjct: 177 FERTLYVCQVT----------EHQGQIRITCIGDGFLYNMVRIIAGTLIYVGRKRIPPEA 226
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYH 253
I +++ + R RG L+ H
Sbjct: 227 IPGILERGERKRGGPTAAPRGLTLSYVH 254
>gi|344996365|ref|YP_004798708.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus
6A]
gi|343964584|gb|AEM73731.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus
6A]
Length = 244
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 110/249 (44%), Gaps = 46/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q Q + TI + +A++K E+ + GRTD GV
Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNK-KTIQGTIEEAIKKLT----GEEVNLIGSGRTDRGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A Q K SK+ + ++ P LN+ LP DI V VP +SAR+
Sbjct: 56 HALNQKANFKTNSKIPT-------DKFPL--ALNSVLPGDISVKDAVEVPLDFSARYSAK 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y++P LD+DAM +A +Y +G +DF++ C +
Sbjct: 107 QKTYKYLIYNKKSRPALLRNYAYYYPYE-LDVDAMQRACEYFIGEYDFKSFCSAD-SEAK 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
RR V +A +T N C I + GFL++ R I + VG G K
Sbjct: 165 TTIRR-VYNAYLT-----------FENECIAIYITANGFLYNMARIIAGTILDVGAGKLK 212
Query: 223 PEIIQQLVD 231
P I +++
Sbjct: 213 PMDIPLVIE 221
>gi|429736840|ref|ZP_19270716.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429153820|gb|EKX96585.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 258
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 97/234 (41%), Gaps = 40/234 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALK+ Y G NYHGFQ QT + + L +AL K C E+ A GRTD+GV
Sbjct: 6 RNIALKVAYAGTNYHGFQRQTPPVVAVQNVLERALAKVC----AEEVELAAAGRTDAGVH 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A+ QVV ++ LP + +N LP DI V +SAR
Sbjct: 62 AYGQVVNFFTDGRIPV-------KRLP--RAVNGLLPPDIVVTEAWEAARDFSARHSATG 112
Query: 122 RNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y Y Q LD++AM A LVGTHD+ + + G +
Sbjct: 113 KAYVYRLEQCTVPDPFTRNYAWQIFQPLDVEAMRAALAMLVGTHDYSSF-RAAGGAPMSP 171
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
R L ++ + + GFL+H +R IMS + VG G
Sbjct: 172 VRTL----------DEIRLTEEGAGRLSCYLHGNGFLYHMVRNIMSTVVSVGIG 215
>gi|408373713|ref|ZP_11171407.1| tRNA pseudouridine synthase A [Alcanivorax hongdengensis A-11-3]
gi|407766417|gb|EKF74860.1| tRNA pseudouridine synthase A [Alcanivorax hongdengensis A-11-3]
Length = 280
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 101/251 (40%), Gaps = 49/251 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M IAL I Y G + G+Q Q T+ L AL + + C GRTD+GV
Sbjct: 14 MARIALGIEYDGSAFRGWQTQQPGVRTVQETLEAALSRVA----NHPVNVVCAGRTDAGV 69
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV SP + + ++ N NLP D+ V +PVPE + ARF +
Sbjct: 70 HGTGQVV------HFDSPAPRAMRS---WIMGANTNLPGDVSVRWATPVPEDFHARFSAV 120
Query: 121 FRNYKYWF-----PQA-----------GLDIDAMHKAAQYLVGTHDFRNL----CKMNVG 160
R Y+Y P A LD+DAM +AA L G HDF + C+
Sbjct: 121 SRRYRYVIYNHPRPPALFRDQVTWNYRPLDVDAMREAAFMLEGEHDFTSYRSVHCQAKSP 180
Query: 161 NGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
++ RL H I + FL H +R I VL +G G
Sbjct: 181 IKTLHSLRLYQHG----------------QILVLEAHANAFLMHMVRNIAGVLMAIGAGK 224
Query: 221 EKPEIIQQLVD 231
+ P+ Q++D
Sbjct: 225 KPPQWAGQVLD 235
>gi|378949833|ref|YP_005207321.1| Pseudouridylate synthase [Pseudomonas fluorescens F113]
gi|359759847|gb|AEV61926.1| Pseudouridylate synthase [Pseudomonas fluorescens F113]
Length = 284
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 105/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLHCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVG HDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGVHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E I++++D
Sbjct: 229 VEWIKEVLD 237
>gi|148245016|ref|YP_001219710.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii
HA]
gi|146326843|dbj|BAF61986.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii
HA]
Length = 247
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 49/275 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G ++HG+Q Q S+ T+ + +AL + C GRTD+GV A
Sbjct: 3 LALGVEYLGTHFHGWQCQKSNIRTVQQVIEQALSSVA----NQPVRVFCSGRTDTGVHAT 58
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
CQV+ + K + +L N +LP D+ PV + + ARF + R
Sbjct: 59 CQVIHFETNIKRKNKA---------WLFGGNVHLPSDVNFTWVKPVDDNFHARFSVITRQ 109
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y W P+ LDI AM+KA QYL G H+F F
Sbjct: 110 YNYKIHNTKIRSSIIATHSLWEPRK-LDIVAMNKAGQYLTGKHNFS------------AF 156
Query: 167 RRLVTHAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + A S +N++F H + +I++ FL H +R I+ L VG+G + E
Sbjct: 157 RGSLCQA--KSPIKNIEFIKLTKHDDNILLDIKANAFLHHMVRNIVGTLLKVGKGEKPIE 214
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
++++++ ++ RK P + L + N+
Sbjct: 215 WVREVLNSKQ--RKQAGPTAPPQGLYFIRAFYKNI 247
>gi|355571506|ref|ZP_09042758.1| tRNA pseudouridine synthase A [Methanolinea tarda NOBI-1]
gi|354825894|gb|EHF10116.1| tRNA pseudouridine synthase A [Methanolinea tarda NOBI-1]
Length = 289
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 130/305 (42%), Gaps = 39/305 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A + Y G + G Q+Q+ + T+ + A + L D F GRTD GV A
Sbjct: 15 LAFRCGYIGDRFSGSQVQSGA-RTVEGEFIAACLRLSLFPDPRAGRFQAAGRTDRGVHAR 73
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + ++P + N +L +LP D+ V + V + R + R
Sbjct: 74 GQVFCI------STPFPDRAIN------LLRYHLPADLWVTGVARVAPGFHPRHGAIHRT 121
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+F + LD+ M +AA+ GT DF + + + V R V A V
Sbjct: 122 YRYFFGERDLDVQPMDRAARAFEGTFDFSLFARPDGRDPV----RTVLSARV-------- 169
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
F +S I F +R++ FLWH +R + S L LVG G +++ + + PR + P
Sbjct: 170 FEES--GIVVFEVRAESFLWHMVRYMASALRLVGTGEADEKLVSSRLSGD--PRGRLSPA 225
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRD-LHEDWSLLSIKATMLGEMIKDTVRESKC 302
G L L+ + + +D ++ R L ++ ++A + G + D C
Sbjct: 226 PPGG-LVLWDVSY---GFPFDPLDAGKKARTYLEREYVSSRVRACVAGHLADDA-----C 276
Query: 303 TMGDL 307
G L
Sbjct: 277 PCGSL 281
>gi|333907974|ref|YP_004481560.1| tRNA pseudouridine synthase A [Marinomonas posidonica IVIA-Po-181]
gi|333477980|gb|AEF54641.1| tRNA pseudouridine synthase A [Marinomonas posidonica IVIA-Po-181]
Length = 274
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 113/277 (40%), Gaps = 59/277 (21%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
+ + L + Y G Y G+Q Q ++ +L KAL + C GRTDSGV
Sbjct: 3 KKVVLVVEYNGSAYKGWQAQKFDVPSVQENLEKALS----VIANHTVKVVCAGRTDSGVH 58
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV + +++ +E + +N LP DI VVA V + + ARF L
Sbjct: 59 ASAQVVHFET---------QAERSERAWTLGVNTYLPDDISVVAARHVDDDFHARFSALS 109
Query: 122 RNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNL----CKMNVG- 160
R Y+Y QA LD++ M +AA+ +GTHDF + C+ N
Sbjct: 110 RRYRYVIYQADFCPAILVKGVTWTYKSLDVNVMRQAAKTFIGTHDFSSFRAVGCQANTPV 169
Query: 161 NGVVNFRRLVTHAGVTSAWQNVQFNDSHH--NICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
++NF D H ++R+ FL H IR VL +G
Sbjct: 170 RTILNF-------------------DVHQLGQYIVLDVRANAFLHHMIRNFAGVLMTIGA 210
Query: 219 GNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTE 255
G + E QQ++D + + + P LY +
Sbjct: 211 GEQPLEWAQQVLDAKDRTKGG----ITASPYGLYFVD 243
>gi|163791438|ref|ZP_02185847.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7]
gi|159873302|gb|EDP67397.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7]
Length = 246
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 99/246 (40%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + + Y G Y G+Q T SD TI ++ T K+ GRTD+G
Sbjct: 1 MRNIKMTVEYDGARYLGWQRLTDSDKTIQ----GKIENTITAMTGTKTEIVGSGRTDAGA 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNEL-PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
A QV K S + EL L LN LPRDI V VPE++ AR++
Sbjct: 57 HAKGQVANFKTESTM----------ELQAMLDHLNRYLPRDIVVKKLEEVPERFHARYNA 106
Query: 120 LFRNYKYW---------------FPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ + AG LDID M+KA LVG HDF
Sbjct: 107 SGKKYSYYVWNNSVPSVFERNFSYEYAGDLDIDKMNKACDKLVGKHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T N ++ F +GFL+ IR IM + +G G +
Sbjct: 155 IGFSSLKKSKKSTVRTINEIKIHKEGDLLHFTFIGEGFLYKMIRIIMGTILEIGAGTTEL 214
Query: 224 EIIQQL 229
E I +
Sbjct: 215 ESIDAI 220
>gi|398842598|ref|ZP_10599776.1| pseudouridylate synthase I [Pseudomonas sp. GM102]
gi|398105546|gb|EJL95637.1| pseudouridylate synthase I [Pseudomonas sp. GM102]
Length = 284
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 107/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVA----DSPVSLLCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AA+YLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNDEITWNHRPLDVERMSEAARYLVGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|423698355|ref|ZP_17672845.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Q8r1-96]
gi|388005097|gb|EIK66364.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Q8r1-96]
Length = 274
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLHCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYLVG HDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDVERMAEAAQYLVGVHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGER 217
Query: 222 KPEIIQQLVD 231
E I++++D
Sbjct: 218 PVEWIKEVLD 227
>gi|56961964|ref|YP_173686.1| pseudouridylate synthase [Bacillus clausii KSM-K16]
gi|62901228|sp|Q5WLN0.1|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16]
Length = 261
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 41/236 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +A K+ Y G + G+Q+Q T+ + +ALQ+ I + GRTD+GV
Sbjct: 1 MSRMACKLSYDGTAFAGYQVQ-PGKRTVQSEVERALQE---IHKGARVPVVASGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV L ++LT E ++ LN +LP DI V + V + AR+
Sbjct: 57 HACGQV--LHFDTELTIAPER-------WVSALNTHLPDDIVVTNAAMVEPDFHARYGAQ 107
Query: 121 FRNYKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y+ + LD+ AM AA++L+GTHDF C N V
Sbjct: 108 AKEYRYYIQCGPFENVFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAAN--TTVT 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ R +TH V + + + +IR GFL++ +R I+ L +G G
Sbjct: 166 DKVRTITHVAVQPSEEGLL----------ISIRGTGFLYNMVRIIVGTLLEIGTGK 211
>gi|398990843|ref|ZP_10694007.1| pseudouridylate synthase I, partial [Pseudomonas sp. GM24]
gi|398142262|gb|EJM31163.1| pseudouridylate synthase I, partial [Pseudomonas sp. GM24]
Length = 328
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 107/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y+G Y G+Q Q + T+ L KAL K S C GRTD+GV A
Sbjct: 63 VALGVEYKGSRYSGWQRQLTGVATVQEELEKALSKVA----NSPVSLQCAGRTDAGVHAC 118
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV D + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 119 GQVVHFDT---------TVDRSLKAWVMGANINLPHDISV-SWARVMPAHFHARFKAIAR 168
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYL+GTHDF C+
Sbjct: 169 RYRYVIYNDQIRPAHLNEEITWNHRP-LDVERMAEAAQYLIGTHDFSAFRAGQCQAKSPI 227
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 228 KKMHHLRVTRHG----------------KMIVLDIRANAFLHHMVRNIAGVLMTIGAGER 271
Query: 222 KPEIIQQLVD 231
E ++++++
Sbjct: 272 PVEWMKEVLE 281
>gi|319779623|ref|YP_004130536.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9]
gi|397661854|ref|YP_006502554.1| tRNA pseudouridine synthase A [Taylorella equigenitalis ATCC 35865]
gi|317109647|gb|ADU92393.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9]
gi|394350033|gb|AFN35947.1| tRNA pseudouridine synthase A [Taylorella equigenitalis ATCC 35865]
gi|399114936|emb|CCG17732.1| tRNA pseudouridine synthase A [Taylorella equigenitalis 14/56]
Length = 268
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 42/244 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G ++ G+Q Q + T+ L AL++ + + S C GRTD+GV A
Sbjct: 5 VALGISYDGRDFQGWQTQPNG-LTVQDKLEAALREFT----RHQVSTICAGRTDTGVHAL 59
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV E D N +++ +N++LP I+V VP+ +SARF + R
Sbjct: 60 GQVVHFDT---------EVDRNLESWIRGVNSHLPDSIRVRWSKIVPDSFSARFSAVSRT 110
Query: 124 YKY-----------WFPQAG-----LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y W +AG LD+++M+ A + ++GTHDF +FR
Sbjct: 111 YVYLLRNERVMSPIWSGRAGWDFHNLDVESMNIAKEKMIGTHDF------------TSFR 158
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
A ++ ++ F +R+ GFL H +R ++ + VG G P I
Sbjct: 159 SSQCQASSPVRTLDLFKINAEGPFIIFTLRANGFLHHMVRNLIGTILYVGMGRFSPSKIP 218
Query: 228 QLVD 231
L++
Sbjct: 219 DLIE 222
>gi|210618029|ref|ZP_03291864.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
gi|210149022|gb|EEA80031.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
Length = 245
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 110/248 (44%), Gaps = 44/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ I L I Y G NY G+Q+Q + T+ + KAL+K E RTDSGV
Sbjct: 1 MKRIKLTIAYDGTNYCGWQVQPNG-ITVEEVVNKALKKLT----GEDIQVIGASRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF-DC 119
A V + T P E + Y LN LP DI +V V E + R+ DC
Sbjct: 56 HALGNVAVFDTHT--TIPPER-----ISY--ALNQRLPEDIVIVKSEEVAEDFHPRYCDC 106
Query: 120 LFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y +F LD++ M KAA YL+G HDF + C NV V
Sbjct: 107 -SKTYEYHILNMRIPIPTKRLTNYFVSYDLDVEKMRKAAGYLIGEHDFVSFC--NVRTDV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R VT + + + I GFL++ +R I+ L VG+G +P
Sbjct: 164 EDTVRTVTELEILKDGEEIT----------IRISGNGFLYNMVRIIVGTLIRVGRGFYEP 213
Query: 224 EIIQQLVD 231
E ++++++
Sbjct: 214 EKVKEILE 221
>gi|317495541|ref|ZP_07953909.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
gi|316914355|gb|EFV35833.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
Length = 265
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 120/271 (44%), Gaps = 41/271 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L Y G YHGFQIQ ++NT+ + KAL+K +K+ GRTDSGV A+
Sbjct: 3 VVLLCRYDGSGYHGFQIQ-PNNNTVQEEIEKALKKI----NKKDIRVYMSGRTDSGVHAY 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV L ++L P E + K LN NLP DI++ + E + R++ +
Sbjct: 58 GQV--LHFDTELNIPNE-------AWKKALNANLPADIRIFGVTTSNEDFHVRYNSTRKT 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y + + + KA Y +G HDF + C N + V +
Sbjct: 109 YHYKLYIGQNVDPFLLNYVGQHKYNFNFEKAQKALNYFIGEHDFSSFCSKN--SSVEDKI 166
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + + N+ ++ ++ + F++ GFL++ +R I+ + V G E ++
Sbjct: 167 REIY-------YFNMYYDKTNPRVINFDVCGNGFLYNMVRIIIGTIQDVAAGKYGAEYVK 219
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
+++D K RK P L L ++N
Sbjct: 220 EILD--KKERKYAGPKADAAGLYLKEVIYNN 248
>gi|25027130|ref|NP_737184.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314]
gi|23492410|dbj|BAC17384.1| putative tRNA pseudouridine synthase A [Corynebacterium efficiens
YS-314]
Length = 300
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 110/264 (41%), Gaps = 44/264 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED------KEKSSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK ++ED + GRTD
Sbjct: 21 IRLDLDYDGTDFHGWARQGDSD-------LRTVQK--VLEDNLGMVLRAPVELTVAGRTD 71
Query: 58 SGVSAFCQVVTLKI-RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV I R L + D +L ++ L+ LP DI+V + PE + AR
Sbjct: 72 AGVHAAGQVAHFDIPRESLQQRSIDGDPTKL--VRRLSRLLPEDIRVHGVNYAPEGFDAR 129
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P L DI AM AA L+G HDF CK
Sbjct: 130 FSALRRHYVYRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVLIGLHDFVAFCKAKP 189
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
V + T W +V + + E ++ + F W +R ++ VG+G
Sbjct: 190 NASTVRELQEFT-------WHDVS-TPTEPQLYEAHVVADAFCWSMVRSLVGSCMAVGEG 241
Query: 220 NEKPEIIQQLVD-IEKYPRKPVYP 242
+ QL+ E+ P PV P
Sbjct: 242 RRAGDFTAQLLTATERSPDVPVAP 265
>gi|345858432|ref|ZP_08810825.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
gi|344328451|gb|EGW39836.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
Length = 263
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 105/246 (42%), Gaps = 44/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G NYHGFQ Q + L+A+ K + +E+ + A GRTD+GV
Sbjct: 1 MRNIRLTVAYDGTNYHGFQRQDQTYGPTIQGTLEAVWKKLV---EEEVTLATAGRTDAGV 57
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QVV +++ + ++P K N+ LPRDI+++ VP ++AR+
Sbjct: 58 HASGQVVNFMTAARIP-------EEKIP--KAFNSLLPRDIRILQAESVPHDFNARWSAK 108
Query: 121 FRNYKYW-----FPQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
++ Y Y P L+++ M AA G H+F+ G
Sbjct: 109 WKRYDYQIDNHRIPNVFLRLYASHVPIPLNVNQMQAAASLFEGHHNFKTFAA--AGGASK 166
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG----N 220
F R + V I + GFL+H +R ++ L VG+G
Sbjct: 167 TFERTIYRCQV----------KEDKGIIRVSCVGNGFLYHMVRIMVGTLMDVGKGRILSQ 216
Query: 221 EKPEII 226
E PEII
Sbjct: 217 EIPEII 222
>gi|259506738|ref|ZP_05749638.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314]
gi|42559821|sp|Q8FS31.2|TRUA_COREF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|259165679|gb|EEW50233.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314]
Length = 282
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 110/264 (41%), Gaps = 44/264 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED------KEKSSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK ++ED + GRTD
Sbjct: 3 IRLDLDYDGTDFHGWARQGDSD-------LRTVQK--VLEDNLGMVLRAPVELTVAGRTD 53
Query: 58 SGVSAFCQVVTLKI-RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV I R L + D +L ++ L+ LP DI+V + PE + AR
Sbjct: 54 AGVHAAGQVAHFDIPRESLQQRSIDGDPTKL--VRRLSRLLPEDIRVHGVNYAPEGFDAR 111
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P L DI AM AA L+G HDF CK
Sbjct: 112 FSALRRHYVYRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVLIGLHDFVAFCKAKP 171
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
V + T W +V + + E ++ + F W +R ++ VG+G
Sbjct: 172 NASTVRELQEFT-------WHDVS-TPTEPQLYEAHVVADAFCWSMVRSLVGSCMAVGEG 223
Query: 220 NEKPEIIQQLVD-IEKYPRKPVYP 242
+ QL+ E+ P PV P
Sbjct: 224 RRAGDFTAQLLTATERSPDVPVAP 247
>gi|429194985|ref|ZP_19187042.1| tRNA pseudouridine synthase A [Streptomyces ipomoeae 91-03]
gi|428669271|gb|EKX68237.1| tRNA pseudouridine synthase A [Streptomyces ipomoeae 91-03]
Length = 288
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G + G+ Q T+ + +AL+ + +E GRTD+GV A
Sbjct: 12 IRLDLSYDGSEFSGWAKQARGQRTVQGEIEEALR--TVTRSRETFELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E D++ LK L L RD++V A P ++ARF ++R
Sbjct: 70 GQVAHVDL------PREVWDEHHGKLLKRLAGRLARDVRVWALREAPSGFNARFSAVWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRNHVLWHDWP---LDVDAMNEAARGLLGEHDFAAYCKRR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R L Q + I +R+ F + +R ++ L VG G+
Sbjct: 179 TTIRTL----------QELSLVRGEDGIITATVRADAFCHNMVRSLIGALLFVGDGH 225
>gi|403510182|ref|YP_006641820.1| tRNA pseudouridine(38-40) synthase [Nocardiopsis alba ATCC
BAA-2165]
gi|402802086|gb|AFR09496.1| tRNA pseudouridine(38-40) synthase [Nocardiopsis alba ATCC
BAA-2165]
Length = 308
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 100/234 (42%), Gaps = 39/234 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L I Y G ++ G+ Q + T+ L AL K + + +S C GRTD+GV A
Sbjct: 37 LRLDISYDGTDFSGWATQPTR-RTVQGELESALAKVLRLPE---ASVTCAGRTDAGVHAR 92
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV L + ++ + EE + L+ L LP+D++V P + ARF LFR
Sbjct: 93 GQVAQLDVPARTWA--EEGER----VLRRLAGVLPKDVRVSGVRLAPPGFDARFSPLFRR 146
Query: 124 YKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y A LD+D M++AA LVG HDF CK G
Sbjct: 147 YVYRVSDAPYGVEPLRRRDVLWHRRPLDVDRMNEAAARLVGEHDFAAFCKKR--EGATTI 204
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R L+ +++ ++ I++ F + +R ++ L VG G
Sbjct: 205 RELL----------RLEWRREEEHLLAGTIQADAFCHNMVRALVGALLAVGDGR 248
>gi|449476909|ref|XP_002194956.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Taeniopygia guttata]
Length = 401
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 118/266 (44%), Gaps = 51/266 (19%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKTCLI-----EDKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL ++ I ED +K SF C
Sbjct: 55 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRCA 114
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA Q+V+LK+R DD L+ +NN+LP I+++ V ++
Sbjct: 115 RTDKGVSAAGQIVSLKVRL--------IDD----ILEKINNHLPSHIRILGLKRVTGGFN 162
Query: 115 ARFDCLFRNYKYWFPQAG--------------LDIDAMHKAAQYLV---GTHDFRNLCKM 157
++ C R Y Y P LD D + + + L GTH+F N
Sbjct: 163 SKNKCDARTYSYMLPTFAFAHKDHDVQEELFRLDRDTLERVNRLLACYKGTHNFHNFTSQ 222
Query: 158 NVGNGVVNFRRLV--THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFL 215
G + +R + + G +NV+F +R Q F+ HQIR ++ ++
Sbjct: 223 K-GPRDPSAKRYIMEMYCGEPFVRENVEF-------AVIQVRGQSFMMHQIRKMIGLVIA 274
Query: 216 VGQGNEKPEII-----QQLVDIEKYP 236
+ +G I+ ++ VD+ K P
Sbjct: 275 IVKGYAAESIMERSWGEEKVDVPKAP 300
>gi|442803780|ref|YP_007371929.1| tRNA pseudouridine synthase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739630|gb|AGC67319.1| tRNA pseudouridine synthase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 266
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 108/244 (44%), Gaps = 42/244 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L I Y G +HG+Q+Q ++ ++ + KA+ K EK S GRTD+GV AF
Sbjct: 6 IKLVIEYDGSFFHGWQVQ-NNQLSVQGEIEKAIFKIT----GEKVSVTGSGRTDAGVHAF 60
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV +S++ P E+ + +LN LP I V++ V + ARF + +
Sbjct: 61 GQVAHFDTQSRI--PAEK-------FAVVLNTVLPPSIAVISSKEVSPDFHARFSAIKKT 111
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
YKY W LDI++M++AA Y +G HDF C G+ V NF
Sbjct: 112 YKYKVLNRPMRSPIMDKRAWHVPWPLDIESMNRAAAYFIGRHDFTAFCAS--GHNVKNFV 169
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R + S W + + GFL++ +R + + VG E I
Sbjct: 170 REI----YVSEWT------EEEGCFVYTVTGNGFLYNMVRIMTGTMVEVGLNKRSAENIP 219
Query: 228 QLVD 231
+L++
Sbjct: 220 ELLE 223
>gi|325832022|ref|ZP_08165119.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1]
gi|325486343|gb|EGC88795.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1]
Length = 284
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 102/248 (41%), Gaps = 41/248 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G + GF Q T+ L AL + D E + C GRTD+GV A
Sbjct: 35 LALTLSYNGAPFSGFARQ-PGQTTVQGDLEDAL-RMLFRRDVETT---CAGRTDAGVHAL 89
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFR 122
QVV+ + + + LP L+ N L D I V P +SARFD R
Sbjct: 90 GQVVSFDVDDR------DIAGRSLPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAR 143
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y WF GLDI AM AQYL+G HDF++ C G
Sbjct: 144 EYHYHLCVDSTCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTH 203
Query: 167 RRLVTHAGVTSAWQNVQFNDS---HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R + + + F+ N+ + FL +R I+ L +VG+G
Sbjct: 204 RNV----------REISFHPETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDA 253
Query: 224 EIIQQLVD 231
+ + ++++
Sbjct: 254 DWVGEVLE 261
>gi|398876314|ref|ZP_10631471.1| pseudouridylate synthase I [Pseudomonas sp. GM67]
gi|398883666|ref|ZP_10638615.1| pseudouridylate synthase I [Pseudomonas sp. GM60]
gi|398196050|gb|EJM83067.1| pseudouridylate synthase I [Pseudomonas sp. GM60]
gi|398204719|gb|EJM91515.1| pseudouridylate synthase I [Pseudomonas sp. GM67]
Length = 284
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 106/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLLCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGTHDFSAFRAGQCQAKSPVK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|291437810|ref|ZP_06577200.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672]
gi|291340705|gb|EFE67661.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672]
Length = 284
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 98/241 (40%), Gaps = 43/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G +HG+ Q T+ + AL+ + GRTD+GV A
Sbjct: 12 VRLDLSYDGAGFHGWAKQAGGRRTVQGEVEDALR--TVTRSGTTYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P +++ LK L LP+D++V A P + ARF ++R
Sbjct: 70 GQVAHVDL------PAGVWAEHKGKLLKRLAGRLPKDVRVWALREAPAGFDARFSAVWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNEAARGLLGEHDFAAYCKRR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + I +R+ F + +R ++ L VG G+ P
Sbjct: 179 TTIRTL----------QELSLVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRPP 228
Query: 224 E 224
+
Sbjct: 229 D 229
>gi|423094455|ref|ZP_17082251.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Q2-87]
gi|397885451|gb|EJL01934.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Q2-87]
Length = 274
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 VALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLHCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYLVG HDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDVERMAEAAQYLVGVHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGER 217
Query: 222 KPEIIQQLVD 231
E I++++D
Sbjct: 218 PVEWIKEVLD 227
>gi|449268482|gb|EMC79346.1| tRNA pseudouridine synthase-like 1 [Columba livia]
Length = 284
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 121/275 (44%), Gaps = 35/275 (12%)
Query: 10 YQGFNYHGFQIQTSSDNTIA---HHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQV 66
Y G Y G ++TS+D ++ ++L KA Q + F RTD+GV A C
Sbjct: 14 YFGTKYSGV-METSNDQSVVGVQNYLEKAAQN---LRPVVPIKFHISSRTDTGVHALCNA 69
Query: 67 VTLKIRSKLTSPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYK 125
L I+ +PG+ NE + LN++L P I+++ V + ARF L R Y
Sbjct: 70 AHLDIQR---APGK-PIFNEKQLVLGLNHHLKPEPIRILNAYRVASSFHARFSALSRTYV 125
Query: 126 Y--------------------WFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
Y W P G L++ AM AAQ+L+GTHDF N +
Sbjct: 126 YRLLMGCRHHSEIPVFERNLCWAPPGGPLNVPAMQDAAQFLLGTHDFSTFRSQNSETPLQ 185
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNI--CEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ R ++ + + + + H + E RS+ FL+ Q+R ++ L VGQG
Sbjct: 186 SPIRTISQVDIQPSAGLLSHHYEHRGLEFWELKFRSRSFLYRQVRRMVGALVAVGQGRLT 245
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
P I++L++I+ P M L L E+D
Sbjct: 246 PRHIKELLEIKDSRAFPANAMAPPSGLFLKSVEYD 280
>gi|317488484|ref|ZP_07947035.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA]
gi|316912416|gb|EFV33974.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA]
Length = 280
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 102/248 (41%), Gaps = 41/248 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G + GF Q T+ L AL + D E + C GRTD+GV A
Sbjct: 31 LALTLSYNGAPFSGFARQ-PGQTTVQGDLEDAL-RMLFRRDVETT---CAGRTDAGVHAL 85
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFR 122
QVV+ + + + LP L+ N L D I V P +SARFD R
Sbjct: 86 GQVVSFDVDDR------DIAGRSLPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAR 139
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y WF GLDI AM AQYL+G HDF++ C G
Sbjct: 140 EYHYHLCVDSTCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTH 199
Query: 167 RRLVTHAGVTSAWQNVQFNDS---HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R + + + F+ N+ + FL +R I+ L +VG+G
Sbjct: 200 RNV----------REISFHPETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDA 249
Query: 224 EIIQQLVD 231
+ + ++++
Sbjct: 250 DWVGEVLE 257
>gi|330810793|ref|YP_004355255.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327378901|gb|AEA70251.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 284
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYNGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLHCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AAQYLVG HDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAAQYLVGVHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E I++++D
Sbjct: 229 VEWIKEVLD 237
>gi|333373218|ref|ZP_08465134.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
Length = 258
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 43/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M I L + Y G ++ GFQ Q + L++T E S GRTD+GV
Sbjct: 1 MGKIKLTVAYDGTDFSGFQRQPGKRT-----VQGTLEETLTRVTGETISVTGAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV+ + + + P E ++++LN +LPRD+ V VP ++ AR+D
Sbjct: 56 HALGQVIHFE--TSVPIPTER-------WVRLLNASLPRDLLVTQAKEVPREFHARYDAC 106
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+++Y+Y +P L D M +AA++L GTHDF + V
Sbjct: 107 WKHYRYTLDTCPIPDLFRRRYQTHYPHP-LSRDRMQRAARHLTGTHDFTSFSAARA--QV 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ RR + H + + + + + GFL+H +R + L +G G P
Sbjct: 164 KDRRRSLYHC---------EVKEVNPGVLSIEVVGDGFLYHMVRILTGTLVEIGAGKIPP 214
Query: 224 EIIQQLV 230
+ I+ ++
Sbjct: 215 DEIRGIL 221
>gi|315925222|ref|ZP_07921436.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621456|gb|EFV01423.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC
23263]
Length = 249
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 103/249 (41%), Gaps = 48/249 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQ---TSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR IAL I Y+G Y G+Q Q S D TI + E+ + GRTD
Sbjct: 1 MRNIALVIAYKGTRYAGWQRQQNAVSIDETIGDAIAAVT--------GERVTLYGAGRTD 52
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
+GV A Q K R ++ P + + LN +LPRDI++ VP + +R+
Sbjct: 53 AGVHARGQRANFKTRVRM--PADR-------FAPALNAHLPRDIRIQKSFEVPADFHSRY 103
Query: 118 DCLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ Y Y W + L++DAM + A LVGTHDF+ M G+
Sbjct: 104 GAKEKTYCYRVWAAPVADPLTDDFCWHVRFPLNVDAMRRGAAVLVGTHDFKTF--MASGS 161
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
G R + G+ + + F GFL++ +R I L +G G
Sbjct: 162 GAKTTVRRIDAIGI----------EQKGRMITFTFCGTGFLYNMVRIIAGTLVEMGSGRR 211
Query: 222 KPEIIQQLV 230
PE + ++
Sbjct: 212 DPESMAAIL 220
>gi|448466547|ref|ZP_21599133.1| tRNA pseudouridine synthase A [Halorubrum kocurii JCM 14978]
gi|445813808|gb|EMA63782.1| tRNA pseudouridine synthase A [Halorubrum kocurii JCM 14978]
Length = 292
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 117/281 (41%), Gaps = 56/281 (19%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSS------FACCGRTDS 58
A ++ Y G Y GFQ Q + T+ LL+ L + +++ + + +A GRTD+
Sbjct: 11 AFRVAYDGREYAGFQRQPHA-TTVEGTLLRGLAEHGILDRGDGPTHATPPGYAAAGRTDA 69
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
GVSA Q V LT + N +LP ++V A + VPE A D
Sbjct: 70 GVSAVAQTVAFAAPDWLTP-------------RAFNGHLPGSVRVWAAADVPEGLHATHD 116
Query: 119 CLFRNYKYWF-----------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
R Y+Y P A +D D + A L G HDF NL NG V R
Sbjct: 117 ATRRTYRYHLYAPARSDGGDRPHA-VDDDRVRDALARLSGEHDFHNLTSDE--NGTV--R 171
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
L AG T A ++ + + GF +R +++ + VG+G P +I
Sbjct: 172 DLT--AGATRA----------RDLLVVEVSADGFPRALVRRLVAAVRAVGRGAADPSLID 219
Query: 228 QLVDIEKYPRK----PVYPMVRGEPLNLYHTEFDNLTWHYD 264
+L+ E P + P P EPL L+ ++ + + D
Sbjct: 220 RLLASEPVPGELGVGPAPP----EPLVLWDVSYEGVAFAVD 256
>gi|257790805|ref|YP_003181411.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243]
gi|257474702|gb|ACV55022.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243]
Length = 255
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 102/248 (41%), Gaps = 41/248 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G + GF Q T+ L AL + D E + C GRTD+GV A
Sbjct: 6 LALTLSYNGAPFSGFARQPGQ-TTVQGDLEDAL-RMLFRRDVETT---CAGRTDAGVHAL 60
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFR 122
QVV+ + + + LP L+ N L D I V P +SARFD R
Sbjct: 61 GQVVSFDVDDR------DIAGRSLPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAR 114
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y WF GLDI AM AQYL+G HDF++ C G
Sbjct: 115 EYHYHLCVDSTCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTH 174
Query: 167 RRLVTHAGVTSAWQNVQFNDS---HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R + + + F+ N+ + FL +R I+ L +VG+G
Sbjct: 175 RNV----------REISFHPETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDA 224
Query: 224 EIIQQLVD 231
+ + ++++
Sbjct: 225 DWVGEVLE 232
>gi|326203861|ref|ZP_08193723.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782]
gi|325985959|gb|EGD46793.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782]
Length = 245
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 108/249 (43%), Gaps = 45/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + I Y G NYHG+Q+Q ++ T+ + KA+ K E C RTD GV
Sbjct: 1 MRKIKIIIEYDGTNYHGWQVQKNA-KTVQETVQKAISKLL----GEGVGVTGCSRTDVGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV S++ PG++ + +NN LP DI + V E++ AR+
Sbjct: 56 HAYGQVAHFLTDSQI--PGDK-------FSYAINNLLPDDIVIKHSEEVSEEFHARYSTK 106
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y A LDI+ M KAA+Y +G HDF G V
Sbjct: 107 GKKYRYLIYNAPHPSAIMRNRSCHVRPVLDIEQMKKAARYFIGEHDFAAF--QATGGQVR 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG----N 220
+ R + +++ + N+ + GFL++ +R I L VG G +
Sbjct: 165 STVREI---------YSMEVSGKEDNMIYIEVSGNGFLYNMVRIIAGTLIYVGMGKLQES 215
Query: 221 EKPEIIQQL 229
E P II L
Sbjct: 216 EIPGIIAGL 224
>gi|354585399|ref|ZP_09004286.1| tRNA pseudouridine synthase A [Paenibacillus lactis 154]
gi|353188668|gb|EHB54188.1| tRNA pseudouridine synthase A [Paenibacillus lactis 154]
Length = 268
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 34/273 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + +K+ Y G +Y+GFQ Q +TI +L +A+ + E+ GRTD+GV
Sbjct: 1 MRNLLMKVSYDGTDYNGFQTQPGG-HTIQDYLEEAIHRLS----GEQLKITASGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV S + P E + LN LP DI V VPE + +R
Sbjct: 56 HARGQVFNFYTASPI--PLER-------WCMALNTWLPEDIVVTEAMEVPEDFHSRRAAK 106
Query: 121 FRNYKY-----WFPQ-----------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y FP LDI+AM + +L+GTHD+ +
Sbjct: 107 RKTYRYTINANQFPDIFNRRYQIHHYGKLDIEAMRQGLSHLIGTHDYTTFASRK--STKP 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + A + + + I + GFL H +R IM L VG+G P+
Sbjct: 165 SHVRTIFDAWIETDTSMCRPGTKDQGIIHTYLTGNGFLQHMVRIIMGTLIEVGEGRRHPD 224
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
++ V +E R P + L L+ E+D
Sbjct: 225 DMR--VILEAKNRAAAGPTAMSKGLMLWEVEYD 255
>gi|29831498|ref|NP_826132.1| tRNA pseudouridine synthase A [Streptomyces avermitilis MA-4680]
gi|38258718|sp|Q82DM1.1|TRUA_STRAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|29608614|dbj|BAC72667.1| putative pseudouridine synthase [Streptomyces avermitilis MA-4680]
Length = 285
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 42/241 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q + T+ + AL +T + GRTD+GV A
Sbjct: 12 VRLDLSYDGTEFSGWAKQAAGRRTVQGEIEDAL-RTVTRSGETTYELTVAGRTDAGVHAR 70
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + PGE +++ LK L LP+D++V + + P ++ARF ++R
Sbjct: 71 GQVAHVDL------PGELWAEHQEKLLKRLAGRLPKDVRVWSLTEAPSGFNARFSAIWRR 124
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ LVG HDF CK G
Sbjct: 125 YAYRVTDNTGGVDPLLRSHVLWHDWP---LDVDAMNEAARRLVGEHDFAAYCKKR--EGA 179
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + + + + F + +R ++ L VG G+ P
Sbjct: 180 TTIRTL----------QELSLVRGDDGVITATVCADAFCHNMVRSLIGALLFVGDGHRGP 229
Query: 224 E 224
+
Sbjct: 230 D 230
>gi|407978647|ref|ZP_11159476.1| tRNA pseudouridine synthase A [Bacillus sp. HYC-10]
gi|407414843|gb|EKF36469.1| tRNA pseudouridine synthase A [Bacillus sp. HYC-10]
Length = 247
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 42/240 (17%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G ++ G+Q+Q T+ + AL K + + E GRTDSGV A QV+
Sbjct: 7 VSYDGTHFKGYQVQ-PGQRTVQTEIESALAK--MHKQDELIPIVASGRTDSGVHAKGQVI 63
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
+ L P E P+ LN+ LP DI+V+ V E + ARF + Y+Y
Sbjct: 64 HFD--TPLAIPMER-----WPF--ALNSLLPDDIRVLKAEEVDESFHARFGVASKEYRYK 114
Query: 127 ----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+P LD+D M +AA+YL+G+HDF + C N V + V
Sbjct: 115 VSTETHQNVFTRQYACHYPYP-LDVDKMREAAEYLIGSHDFTSFCAANTE---VQDKVRV 170
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
+A W+NV + E +R GFL++ +R + L +G G PE I+ ++
Sbjct: 171 IYA---LEWKNVS------DGLEMRVRGSGFLYNMVRIMAGTLLEIGAGKFHPEEIKAML 221
>gi|40063298|gb|AAR38116.1| tRNA pseudouridine synthase A [uncultured marine bacterium 578]
Length = 247
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 49/267 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G N++G+QIQ S T+ + AL L+ + F CCGRTDSGV A
Sbjct: 3 IALGVEYLGTNFNGWQIQKSGIRTVQEVVESAL---SLVANHPVRVF-CCGRTDSGVHAK 58
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ + S ++ ++ N NLP D+ V + + ARF+ R+
Sbjct: 59 EQVIHFETDSNRSNEA---------WVFGGNVNLPSDVNFSWAKDVDDDFHARFNAYARS 109
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y+Y W P++ L+ID M KAA +L+G HDF +F
Sbjct: 110 YEYKIHNHPVRSSLNANYYLWEPRS-LNIDEMRKAANFLIGEHDFS------------SF 156
Query: 167 R-RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R RL + + +S N+ I++ FL H +R I+ L +G+G E
Sbjct: 157 RGRLCQAKSPVKTVEYLDIIESDDNLI-VKIKANAFLHHMVRNIVGTLLKIGRGERDAEW 215
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLY 252
+ L +E R+ P EP LY
Sbjct: 216 M--LSVLESKDRREAGPT--AEPQGLY 238
>gi|383818685|ref|ZP_09973971.1| tRNA pseudouridine synthase A [Mycobacterium phlei RIVM601174]
gi|383338541|gb|EID16905.1| tRNA pseudouridine synthase A [Mycobacterium phlei RIVM601174]
Length = 290
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 123/296 (41%), Gaps = 53/296 (17%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I Y G ++ G+ +Q +S T+A + AL + + GRTD+GV A Q
Sbjct: 17 LDIAYDGTDFAGWAVQ-ASQRTVAGVIEDALSTVF----RTRIQLRAAGRTDTGVHATAQ 71
Query: 66 VVTLKIRS--------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
V I + + T PG D P ++ L LP D++V+ P + ARF
Sbjct: 72 VAHADIPADALPRAYPRTTRPG---DAEFTPLVRRLARLLPGDVRVLDIVRAPAGFDARF 128
Query: 118 DCLFRNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 160
L R+Y Y A LD+DAM++A++ L+G HDF C+
Sbjct: 129 SALRRHYTYRLSTAPYGVEPQDTRFVTAWPRPLDVDAMNEASRPLLGLHDFAAFCRHR-- 186
Query: 161 NGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
G R L Q + + H + ++ + F W +R ++ + VG+
Sbjct: 187 EGATTIREL----------QRLDWTRDGHRVTA-HVTADAFCWSMVRSLVGAILAVGEHR 235
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEV-SHVLRDL 275
+P + L+ ++ R + + L L ++ DE+E +H+ RDL
Sbjct: 236 REPGWLAGLLTADR--RSSEFAAAPPQGLTLVGVDYPP----DDELEARTHITRDL 285
>gi|406671714|ref|ZP_11078953.1| tRNA pseudouridine synthase A [Facklamia hominis CCUG 36813]
gi|405580964|gb|EKB55023.1| tRNA pseudouridine synthase A [Facklamia hominis CCUG 36813]
Length = 263
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 117/267 (43%), Gaps = 38/267 (14%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
+K+ Y G Y G+Q+Q + +I L AL K + +K + +C GRTDSGV A Q
Sbjct: 6 IKLQYDGTRYVGYQVQPNGP-SIQGALEAALLKITKQKSDQKIATSCSGRTDSGVHALGQ 64
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
VV + E D + L LN L +DI+VVA + V +++ AR+ L + Y+
Sbjct: 65 VVHFDL---------ELDLPPVAILNALNALLDKDIRVVAANKVSDQFHARYQVLGKGYR 115
Query: 126 YWFPQAGL----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
Y + + ++ KA + L+G HDF + C + RR
Sbjct: 116 YRIDTGKVLNPFKRFYTTHHPYSYSLTSIQKALEPLLGWHDFTSFCSTKTDK--EDKRRT 173
Query: 170 VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
+ A V D+ F+ GFL++ IR I+ +G G + P +Q+L
Sbjct: 174 LYKAEVR--------EDNEGQELIFDFYGNGFLYNMIRIIVGTAMQIGDGLKDPSEMQRL 225
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ ++ R P + L L H ++
Sbjct: 226 LQVKD--RNQAGPTAPPQGLYLMHVDY 250
>gi|312962053|ref|ZP_07776550.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6]
gi|311283863|gb|EFQ62447.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6]
Length = 284
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 103/242 (42%), Gaps = 54/242 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVPTVQETLEKALSKVA----DSSVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ T ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQAERTMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD + M +AAQ+LVG HDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRP-LDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPI 183
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ R+ H + +IR+ FL H +R I VL +G G E
Sbjct: 184 KEVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTG-E 226
Query: 222 KP 223
+P
Sbjct: 227 RP 228
>gi|309789641|ref|ZP_07684222.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG-6]
gi|308228377|gb|EFO82024.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG6]
Length = 262
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 118/285 (41%), Gaps = 40/285 (14%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR IAL++ Y G ++ G Q Q + + +AL++ +E+ GRTD+GV
Sbjct: 1 MRNIALRLAYDGTDFIGSQYQNQGRS-----VQEALEQAWEGLTQERRRVNLAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV ++ E+ + L+ +N LP D+ + A + V + AR
Sbjct: 56 HAVGQVANIRT---------ETRHSRRTILRGMNAKLPPDVAIQAVAEVDPDFHARHSAN 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R+Y+Y WF + LD AM +A L GTHDF + V
Sbjct: 107 RRSYRYLIDNNAAWLPNLRNYVWFVEQPLDQAAMAEALVRLEGTHDFAAFTAL------V 160
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+R T+ +V D H + ++ + FL H +R I+ + LVG+G P+
Sbjct: 161 PEQRSTVRTCYTARLSSVTMFDRH--LIAIDLAANAFLQHMVRVIVGTVVLVGRGKITPD 218
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVS 269
Q + +E RK P L L + +D EV+
Sbjct: 219 GFQAI--LEGRDRKAAGPTAVAHGLTLVSVGYPPGLLRWDAGEVT 261
>gi|389684997|ref|ZP_10176321.1| tRNA pseudouridine synthase A [Pseudomonas chlororaphis O6]
gi|388550650|gb|EIM13919.1| tRNA pseudouridine synthase A [Pseudomonas chlororaphis O6]
Length = 274
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 121/287 (42%), Gaps = 61/287 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L KAL + +C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVPSVQETLEKALSRVA----DSPVLLSCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDISV-SWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQ+LVGTHDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDVERMAEAAQHLVGTHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KEIHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNITGVLMTIGAGER 217
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEV 268
E +++++ R V P LY + + ++DE E+
Sbjct: 218 PVEWAREVLE----SRIRRTGGVTAHPFGLYLVQVE----YHDEFEL 256
>gi|399005276|ref|ZP_10707866.1| pseudouridylate synthase I [Pseudomonas sp. GM17]
gi|398126660|gb|EJM16087.1| pseudouridylate synthase I [Pseudomonas sp. GM17]
Length = 284
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 121/287 (42%), Gaps = 61/287 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L KAL + +C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVPSVQETLEKALSRVA----DSPVLLSCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP DI V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQAERSMKA---------WVMGANINLPHDISV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQ+LVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRP-LDVERMAEAAQHLVGTHDFSAFRAGQCQAKSPI 183
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 184 KEIHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGER 227
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEV 268
E +++++ R V P LY + + ++DE E+
Sbjct: 228 PVEWAREVLE----SRIRRTGGVTAHPFGLYLVQVE----YHDEFEL 266
>gi|90410767|ref|ZP_01218782.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK]
gi|90328398|gb|EAS44696.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK]
Length = 261
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 109/250 (43%), Gaps = 54/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q D ++ L KAL I +K + F C GRTD+GV
Sbjct: 3 IALGIEYDGAKYCGWQRQVDVD-SVQERLEKALSH---IANKPIAVF-CAGRTDTGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + D + + +N +LPRDI V +PV + + ARF R
Sbjct: 58 GQVVHFDV---------DVDRQMVAWTIGVNAHLPRDISVRWATPVSDDFHARFSATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+AAQYLVG HDF ++
Sbjct: 109 YRYIIYNNALRPAIFGIGVSHYHGHLDEKKMHEAAQYLVGEHDFTSV------------- 155
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICE------FNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ S W+ ++ H N+ +I++ F+ H +R I L VG+G E
Sbjct: 156 -RASQCQSRSPWRAMK----HVNVSRQGDFVIIDIKANAFVHHMVRNIAGSLIRVGRGQE 210
Query: 222 KPEIIQQLVD 231
PE ++ +++
Sbjct: 211 TPEWMKWVLE 220
>gi|389816155|ref|ZP_10207342.1| tRNA pseudouridine synthase A [Planococcus antarcticus DSM 14505]
gi|388465419|gb|EIM07737.1| tRNA pseudouridine synthase A [Planococcus antarcticus DSM 14505]
Length = 247
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 41/246 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + I Y G + G+Q+Q + T+ L+K L+ I E GRTD+ V
Sbjct: 1 MKRLKATIAYDGSGFAGYQVQPET-RTVQLELMKVLKT---IHKGEVVQVVASGRTDAKV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV+ + G +LK LN LP DI+V + V + AR+
Sbjct: 57 HATGQVIHFDTEFSIPVSG---------WLKALNVLLPEDIRVSSIEEVDVSFHARYHTT 107
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y + +G LDI+AM AA+ L+GTHDF + C N V+
Sbjct: 108 GKTYRYKWDCSGIISPFTRNHMVHVKQPLDIEAMRTAARALIGTHDFSSFCAAN--TAVI 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + Q + F + H N I GFL++ +R I L VG G K
Sbjct: 166 DKVRTI---------QRLDFEE-HGNELHMIIEGSGFLYNMVRIIAGTLTEVGIGKRKAG 215
Query: 225 IIQQLV 230
+ +V
Sbjct: 216 ELSGIV 221
>gi|338730830|ref|YP_004660222.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
gi|335365181|gb|AEH51126.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
Length = 260
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 114/273 (41%), Gaps = 45/273 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ A I Y G N+ GFQ+Q T+ + +AL++ K K S C GRTD+GV
Sbjct: 1 MKKFAAVISYDGNNFFGFQLQKDV-RTVQGVIEQALERIF----KTKISVVCAGRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A QV+ + P E + LN NLP D+ V VP+ ++ RF
Sbjct: 56 HAVGQVIAFDCPYDI--PPENMKN-------ALNANLPDDVYVRKVIEVPKDFNPRFCAT 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ R Y +WFP LD++ M +AA+YL G HDF+ K GN
Sbjct: 107 RRIYHYFIYNGKTPNVFTRKYYWWFPYE-LDVNKMREAAKYLEGEHDFKAFAKTE-GNEK 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R + ++ N+ + + FL +R I+ L VG G +P
Sbjct: 165 STVRTI----------YRIRILRLRKNLILIRVEGRSFLRRMVRNIVGALVKVGVGVWEP 214
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+++++ P G L LY EF
Sbjct: 215 IKIKEILESRNRSLAPATAPAHG--LYLYSVEF 245
>gi|395499480|ref|ZP_10431059.1| tRNA pseudouridine synthase A [Pseudomonas sp. PAMC 25886]
Length = 274
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVPTVQETLEKALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ T ++ N NLP D+ V+W+ V P + ARF + R
Sbjct: 65 GQVVHFDTQAERTMKA---------WVMGANINLPHDVS-VSWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD + M +AAQ+LVG HDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDAERMAEAAQHLVGIHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KEVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGER 217
Query: 222 KPEIIQQLVD 231
E +++++
Sbjct: 218 PVEWAKEVLE 227
>gi|340348973|ref|ZP_08671997.1| tRNA pseudouridine synthase A [Prevotella nigrescens ATCC 33563]
gi|339612539|gb|EGQ17342.1| tRNA pseudouridine synthase A [Prevotella nigrescens ATCC 33563]
Length = 260
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 107/252 (42%), Gaps = 41/252 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ +K Y G NYHG+QIQ + T+ L KAL + K+ GRTDSGV
Sbjct: 1 MQRYFIKFSYDGTNYHGWQIQPNGI-TVQEVLEKALSTLL----RSKTGVVGAGRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A + + E D +L Y LN LPRD+ V A PV + ARF
Sbjct: 56 HA------RTMFAHFDCSEEAIDCKQLCY--KLNRLLPRDVAVTAVFPVGNELHARFSAT 107
Query: 121 FRNYKYWFPQAG--------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
R Y Y+ LD D M+KAA YLVG HDF+ CK N
Sbjct: 108 SRTYHYYMHHGRNPFLKAYSCEMPYVLDYDRMNKAASYLVGEHDFKCFCKAGGDNK---- 163
Query: 167 RRLVTHAGVTSA-WQNVQFNDSHHNICE------FNIRSQGFLWHQIRCIMSVLFLVGQG 219
T +T A W+ S + E F I + FL + +R ++ L VG+
Sbjct: 164 ---TTICNLTEARWERCNTQLSIRDNVEEAGQWCFVITANRFLRNMVRAVVGTLVEVGRY 220
Query: 220 NEKPEIIQQLVD 231
P+ Q++VD
Sbjct: 221 RISPDEFQKIVD 232
>gi|312127288|ref|YP_003992162.1| tRNA pseudouridine synthase a [Caldicellulosiruptor hydrothermalis
108]
gi|311777307|gb|ADQ06793.1| tRNA pseudouridine synthase A [Caldicellulosiruptor hydrothermalis
108]
Length = 244
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 46/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q Q + TI + +A++K E+ + GRTD GV
Sbjct: 1 MRNILLTIEYDGTEYFGWQKQ-PNKKTIQGTIEEAIKKLT----GEEVNLIGSGRTDRGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A Q K SK+ + ++ P LN+ LP DI + VP +SAR+
Sbjct: 56 HALNQKANFKTSSKIPT-------DKFPL--ALNSVLPGDISIKDAVEVPLNFSARYSAK 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y++P LD+DAM +A +Y +G +DF++ C +
Sbjct: 107 QKTYKYLIYNKNSRPALLRNYAYYYPYQ-LDVDAMQRACEYFIGEYDFKSFCSAD-SEAK 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
RR V ++ +T N C I + GFL++ R I + VG G K
Sbjct: 165 TTIRR-VYNSYLT-----------FENECIAIYITANGFLYNMARIIAGTILDVGAGKLK 212
Query: 223 PEIIQQLVD 231
P I +++
Sbjct: 213 PMDIPLIIE 221
>gi|139438880|ref|ZP_01772340.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC
25986]
gi|133775591|gb|EBA39411.1| tRNA pseudouridine synthase A [Collinsella aerofaciens ATCC 25986]
Length = 274
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 111/263 (42%), Gaps = 49/263 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ ++ Y G +Y GF Q T+A L +A++ + C GRTD+GV A
Sbjct: 17 LVFRVAYDGSSYSGFAEQ-PGQATVAGELRRAIETLL----RRPIDLTCAGRTDAGVHAV 71
Query: 64 CQVVTLKIRSKLTSPGEESDDNELP-----YLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
Q +++ + D EL +L+ ++ LP+DI + + +SARFD
Sbjct: 72 AQYISVPV-----------TDAELALTRRRWLRAMDALLPKDIAINEVYRARKGFSARFD 120
Query: 119 CLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 162
R Y Y W+ + LD++AM A L+G DF++ CK+ G
Sbjct: 121 ARSRTYTYRIADRDARPVLSRGAVWWHRYPLDVEAMSAACPALLGEQDFKSFCKVASAVG 180
Query: 163 VVNFRRLVTHAGVTSA--WQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
TH V A V F + +I F I FL +R I+ L +G
Sbjct: 181 ------KPTHRCVMRAEFGHEVAFGE---DILTFTIEGNAFLHSMVRTIVGTLVEIGMHR 231
Query: 221 EKPEIIQQLVDI-EKYPRKPVYP 242
KPE +++++D ++ P P
Sbjct: 232 RKPEWMREVIDACDRTAAGPTAP 254
>gi|333980376|ref|YP_004518321.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
gi|333823857|gb|AEG16520.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
Length = 248
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 114/273 (41%), Gaps = 42/273 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
MR I L I Y G NYHGFQ Q + TI L K L++ E + + GRTD+G
Sbjct: 1 MRNIKLTIAYDGTNYHGFQEQRGTGLVTIQGVLEKCLRRLVGREIRVIGA----GRTDAG 56
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
V A QVV + P E + LN LPRDI + V ++ AR+
Sbjct: 57 VHARGQVVNFDA-CGWSIPTER-------IVLALNGMLPRDIAALKAEEVGPEFHARYSA 108
Query: 120 LFRNYKY-----------W-----FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L + Y+Y W F LD+ AM +AAQ LVGTHDF + G+ V
Sbjct: 109 LAKTYRYTIYNSRIPSPFWRLYSHFVPRPLDVQAMARAAQRLVGTHDFASF--QAAGSPV 166
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R + A V + + R GFL++ +R ++ L VG G P
Sbjct: 167 KHTVRTLFSADVCREGK---------ELVHLTFRGDGFLYNMVRIMVGTLIEVGLGKRDP 217
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ I ++ R P E L L E+
Sbjct: 218 DDIPAILAARD--RTRAGPTAPPEGLCLERVEY 248
>gi|302558965|ref|ZP_07311307.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000]
gi|302476583|gb|EFL39676.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000]
Length = 285
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 97/240 (40%), Gaps = 42/240 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL +T GRTD+GV A
Sbjct: 12 VRLDLSYDGAEFSGWARQAGGRRTVQGEIEDAL-RTVTRSGGTVYELTVAGRTDAGVHAR 70
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E ++ LK L LPRD++V A P ++ARF ++R
Sbjct: 71 GQVAHVDL------PREVWAEHHTKLLKRLAGRLPRDVRVWALREAPAGFNARFSAVWRR 124
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 125 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNEAARGLLGEHDFAAYCKRR--EGA 179
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L Q + I +R+ F + +R ++ L VG G+ P
Sbjct: 180 TTIRTL----------QELSLLRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRPP 229
>gi|154505512|ref|ZP_02042250.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149]
gi|336431647|ref|ZP_08611492.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794170|gb|EDN76590.1| tRNA pseudouridine synthase A [Ruminococcus gnavus ATCC 29149]
gi|336019920|gb|EGN49638.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
Length = 246
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 42/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + L + Y G NY G+QIQ + T+ L +AL+K E+ + RTDSGV
Sbjct: 1 MKRLKLTVAYDGTNYCGWQIQPNGI-TVEEVLNRALRKLT----GEEITVIGASRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V S+ + P E + Y LN LP DI V+ V + R+
Sbjct: 56 HALGNVAVFD--SETSIPPER-----ISY--ALNQRLPDDIVVIRSEEVSADWHPRYCNS 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y +F LDI+ M KAAQYLVGTHDF + C NV V
Sbjct: 107 KKTYEYHILNAKIPDPTRRLTRYFVSFDLDIEKMKKAAQYLVGTHDFVSFC--NVRTDVE 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + + + I+ GFL++ +R I+ L VG+G PE
Sbjct: 165 DTVRTIYSLDILPVGDEIT----------IRIQGNGFLYNMVRIIVGTLVRVGRGFYTPE 214
Query: 225 IIQQLVD 231
+Q++++
Sbjct: 215 QVQEILE 221
>gi|269102116|ref|ZP_06154813.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162014|gb|EEZ40510.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 261
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 114/273 (41%), Gaps = 52/273 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q D ++ L KAL K E C GRTD+GV
Sbjct: 3 IALGIEYDGAKYFGWQRQREVD-SVQERLEKALAKIA----NEPVDVFCAGRTDAGVHGT 57
Query: 64 CQVV--TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV + + K+ + + +N +LP DI V + V + + ARF
Sbjct: 58 GQVVHFDVNVNRKMAA-----------WTMGVNAHLPSDIAVRWAAEVSDDFHARFTATA 106
Query: 122 RNYKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y LD MH+A QYL+G +DF +
Sbjct: 107 RRYRYVIYNHALRPAILSSGVSHYHGDLDEKKMHEAGQYLLGENDF------------TS 154
Query: 166 FRRLVTHAGVTSAWQNV-QFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
FR H S W+N+ N S N +I++ F+ H +R I L VG+G EKP
Sbjct: 155 FR--AVHCQSRSPWRNLMHLNVSRQGNYVIIDIKANAFVHHMVRNITGSLIKVGRGEEKP 212
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
E I+ L +E+ R + E L L ++
Sbjct: 213 EWIKWL--LEQKDRTLAGATAKAEGLYLVDVDY 243
>gi|302669997|ref|YP_003829957.1| tRNA pseudouridine synthase A [Butyrivibrio proteoclasticus B316]
gi|302394470|gb|ADL33375.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus
B316]
Length = 262
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 43/272 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
+R I L + Y G Y+G+ QTS+ NTI L +A+++ E RTD+GV
Sbjct: 4 IRRIMLTVSYDGTAYNGWAEQTSTPNTIEGELNRAIERLT----GEPVHVIGASRTDAGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ V S + PG+ ++ LN+ LP+DI++V V + R
Sbjct: 60 HAYGNVAVFDTASSI--PGDR-------FVFALNHELPQDIRIVNSREVATSFHPRHCDT 110
Query: 121 FRNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y + LDI M+ AA YLVG HDF + C NV + +
Sbjct: 111 EKTYEYRIFNSQIMDPTKRFYTCHFSMPLDIGRMNAAAHYLVGEHDFTSFC--NVESQAL 168
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + VT V ++ GFL++ +R I L +G+G P
Sbjct: 169 SHVRTIKDIRVTRNGDEVV----------ISVTGNGFLYNMVRIIAGTLMQIGRGKGTPA 218
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
++ ++D +KY R P E L L +F
Sbjct: 219 EVKDILD-KKY-RGAAGPTAPAEGLFLVEYKF 248
>gi|229496121|ref|ZP_04389842.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC
35406]
gi|229316952|gb|EEN82864.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC
35406]
Length = 264
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 46/269 (17%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I + G +Y G+Q Q N +A + + +++ + + S GRTD+GV+A+
Sbjct: 6 LDIAFDGSSYCGWQRQP---NGLA--VQQVIEEALSLLFRTPISIVGAGRTDAGVNAYSL 60
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
+ I E + + K LN LP +I + + PV ARFD + R Y
Sbjct: 61 PAHVDI-------PETAKGTPYRWRKSLNGILPHNINIRSIRPVQPSAHARFDAISRRYL 113
Query: 126 YW------------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+ FP DI+ M++AAQYL+GTHDF + +++
Sbjct: 114 YFIAEERDPFNRQWVLPVRPFP----DIEKMNQAAQYLLGTHDFTSFSRLHTD------- 162
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
TH + + + S+ + +F+I + FL + +R I+ L VG PE I
Sbjct: 163 ---THTNICTIQEAFWSPSSYPSTWQFSITANRFLRNMVRAIVGTLLEVGASTLAPEDII 219
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+++ + R VRGE L L H E+
Sbjct: 220 EIIRAQD--RNRAGASVRGEALFLAHVEY 246
>gi|239814424|ref|YP_002943334.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110]
gi|259550491|sp|C5CSH0.1|TRUA_VARPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239801001|gb|ACS18068.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110]
Length = 270
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 106/272 (38%), Gaps = 44/272 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G Y G+Q Q S T+ L AL K + C GRTD+GV A
Sbjct: 3 LALGIRYNGQAYEGWQSQRSG-RTVQDKLEAALAKFA----AQPIGTLCAGRTDAGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + +++ N LP DI V PVP+++ R L R
Sbjct: 58 MQVVHFDT---------TVEREPFSWMRGTNRFLPDDIAVQWAQPVPDEFHCRASALARR 108
Query: 124 YKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVN 165
Y Y Q+ LD DAM AA LVG HDF + + V +
Sbjct: 109 YLYVLSQSPVRPSLDSGRVGWSMHPLDGDAMRAAAALLVGKHDFSSFRASACQARSPVKD 168
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
RR+ + + F + FL H IR +M L +G+G+E+PE
Sbjct: 169 LRRI----------EITRVGSGDRCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEW 218
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I ++ +E RK P L +D
Sbjct: 219 ITEV--LEARSRKVAAPTFSANGLYFLGPLYD 248
>gi|152996062|ref|YP_001340897.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1]
gi|150836986|gb|ABR70962.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1]
Length = 274
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 102/241 (42%), Gaps = 48/241 (19%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
+ + L + Y G Y G+Q Q ++ +L KAL I C GRTDSGV
Sbjct: 3 KKVVLVVEYNGSEYKGWQAQKFGVPSVQENLEKALA----IIANHPVKVVCAGRTDSGVH 58
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV + + + NE + +N +LP DI VVA SPV + ARF L
Sbjct: 59 ASAQVVHFET---------DVERNERAWTLGVNTHLPSDITVVAASPVSNDFHARFSALS 109
Query: 122 RNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y + LD+ AM +AA+ +GTHDF +
Sbjct: 110 RRYRYVIYSSDFCPAILSKGITWTYKNLDVSAMKEAAKVFLGTHDFSS------------ 157
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEF---NIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
FR + A N H + ++ ++R+ FL H IR VL +G G EK
Sbjct: 158 FRAVGCQAKTPI---RTILNFEVHQLGQYIVLDVRANAFLHHMIRNFAGVLMSIGAG-EK 213
Query: 223 P 223
P
Sbjct: 214 P 214
>gi|269216172|ref|ZP_06160026.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122]
gi|269130431|gb|EEZ61509.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122]
Length = 331
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 98/245 (40%), Gaps = 45/245 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL + Y G + GF Q S T L++ + + C GRTD+GV
Sbjct: 72 RCVALGVAYDGAPFAGFARQAESHVTTVQ---GELERVLSVLYRRAVDTVCAGRTDAGVH 128
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYL-KMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QVV+ + EE L L K +N + I V P +SARFD
Sbjct: 129 ALGQVVSFDLTE------EEFASRPLRTLMKSMNALVDERITVTCAEERPAGFSARFDAT 182
Query: 121 FRNYKYWFPQ-----------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNV---- 159
R Y+Y+ A LD+DAM+ AA++LVG HDF++ C +
Sbjct: 183 SREYRYFIATGNARPVLIARSVWHLRGAPLDVDAMNTAARFLVGEHDFKSFCVASSALHL 242
Query: 160 -GNGVVNFRRLVTHAGVTSAWQNVQFNDSH---HNICEFNIRSQGFLWHQIRCIMSVLFL 215
G G RR++ +H + E I FL IR I+ L
Sbjct: 243 EGEGRSTCRRVI----------EADVRSTHVMGTPVVEVRIVGNAFLHSMIRIIVGTLVA 292
Query: 216 VGQGN 220
VGQG
Sbjct: 293 VGQGR 297
>gi|222529670|ref|YP_002573552.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM
6725]
gi|254789602|sp|B9MKC1.1|TRUA_ANATD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|222456517|gb|ACM60779.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM
6725]
Length = 244
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 109/249 (43%), Gaps = 46/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q Q + TI + +A++K E+ + GRTD GV
Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNK-KTIQGTIEEAIKKLT----GEEVNLIGSGRTDRGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A Q K SK+ + ++ P LN+ LP DI + P +SAR+
Sbjct: 56 HALNQKANFKTSSKIPT-------DKFPL--ALNSVLPGDISIKDAVEAPLDFSARYSAR 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y++P LD+DAM +A +Y +G +DF++ C +
Sbjct: 107 QKTYKYLIYNKKSRPALLRNYAYYYPYQ-LDVDAMQRACEYFIGEYDFKSFCSAD-SEAK 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
RR V +A +T N C I + GFL++ R I + VG G K
Sbjct: 165 TTIRR-VYNAYLT-----------FENECIAIYITANGFLYNMARIIAGTILDVGAGKLK 212
Query: 223 PEIIQQLVD 231
P I +++
Sbjct: 213 PMDIPLIIE 221
>gi|194017442|ref|ZP_03056053.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061]
gi|194010714|gb|EDW20285.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061]
Length = 247
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 42/240 (17%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G ++ G+Q+Q T+ + AL + + + E GRTDSGV A QV+
Sbjct: 7 VSYDGTHFKGYQVQ-PGQRTVQTEIESALAR--MHKQDELIPIVASGRTDSGVHAKGQVI 63
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
+ L+ P E P+ LN+ LP DI+V+ V E + ARF + + Y+Y
Sbjct: 64 HFD--TPLSIPMER-----WPF--ALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYK 114
Query: 127 ----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
FP LD D M +AA +L+GTHDF + C N V + R +
Sbjct: 115 VSTETHQNVFTRQYACHFPYR-LDADKMREAAGHLIGTHDFTSFCAAN--TEVQDKVREI 171
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
T W+NV + E +R GFL++ +R I L +G G PE I+ ++
Sbjct: 172 ----YTLEWKNVS------DGLEMRVRGNGFLYNMVRIIAGTLLEIGSGKFHPEEIKAML 221
>gi|452972629|gb|EME72458.1| tRNA pseudouridine synthase A [Bacillus sonorensis L12]
Length = 247
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 108/241 (44%), Gaps = 44/241 (18%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
I Y G ++G+Q+Q T+ L +AL+ L + KE+ GRTDSGV A Q
Sbjct: 7 ISYDGHLFYGYQVQ-PGQRTVQDELERALK--TLHKSKERIPVVASGRTDSGVHAVGQ-- 61
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
T+ ++L+ P + + PY LN LP DI V V +++ ARF + Y+Y
Sbjct: 62 TIHFDTQLSIP-----ETKWPY--ALNALLPDDIAVTKAEAVDDQFHARFSAKKKEYRYM 114
Query: 128 FPQA----------------GLDIDAMHKAAQYLVGTHDFRNLC--KMNVGNGVVNFRRL 169
+ LD+ + KAAQ+LVGTHDF + C K V + V L
Sbjct: 115 IYRGRHLNVFKRHYAYHVPYELDLQMVEKAAQHLVGTHDFTSFCTAKTEVKDKVRTIYEL 174
Query: 170 VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
W + + + I GFL++ +R I L VG G P+ I+++
Sbjct: 175 --------EWSETE------DGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFLPDDIEKM 220
Query: 230 V 230
+
Sbjct: 221 I 221
>gi|422633262|ref|ZP_16698409.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. pisi str.
1704B]
gi|330943525|gb|EGH45866.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. pisi str.
1704B]
Length = 284
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 105/248 (42%), Gaps = 49/248 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 75 GQVVHFDTQAERTLKA---------WVMGANINLPHDVSVTWARVMPATFHARFKAIARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVV 164
Y+Y W + LD++ M +AA+YLVGTHDF + + V
Sbjct: 126 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVK 184
Query: 165 NFRRL-VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
L VTH H + ++R+ FL H +R I VL +G G
Sbjct: 185 QLHHLRVTH---------------HGKMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPV 229
Query: 224 EIIQQLVD 231
E +++++
Sbjct: 230 EWAREVLE 237
>gi|257784931|ref|YP_003180148.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469]
gi|257473438|gb|ACV51557.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469]
Length = 294
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 36/244 (14%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ +K+ Y+G + GF Q + ++A L +AL+ + + C GRTD+GV A
Sbjct: 38 LVIKLGYRGAAFCGFAEQ-PTQRSVAGDLRRALETVL----RREVELTCAGRTDAGVHAQ 92
Query: 64 CQVVTLKI-RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
Q V+L + + L+ GE+ ++ L DI + P+ +SARFD R
Sbjct: 93 VQYVSLPVYDADLSFSGEK-------LVRSLTALTDDDISIRQLFRAPQGFSARFDAQAR 145
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
+Y+Y W+ LD D M KAAQ LVG HDF++ CK G
Sbjct: 146 SYRYRICADSARPILGWDHVWWYNGHLDADLMDKAAQALVGEHDFKSFCKAISAEGKPT- 204
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
R V V + ++ + +I FL + +R I+ L +G+G+ E I
Sbjct: 205 HRFVERLSVE------EIEEAGEKLIAVDITGNAFLHNMVRTIVGTLVEIGRGHRPVEWI 258
Query: 227 QQLV 230
+++
Sbjct: 259 DEVL 262
>gi|417950508|ref|ZP_12593628.1| tRNA pseudouridine synthase A [Vibrio splendidus ATCC 33789]
gi|342806291|gb|EGU41519.1| tRNA pseudouridine synthase A [Vibrio splendidus ATCC 33789]
Length = 264
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 112/271 (41%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y G+Q Q + + + L+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTHYFGWQRQRDVKS-----VQEELEKALSVVANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + D + + N N+P+DI V + V E + ARF R
Sbjct: 58 GQVVHFET---------NVDRKMVAWTMGANANMPKDIAVRWATEVNEDFHARFSATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIFNHALRPGILNSGVSHYHGYLDEKKMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQN-VQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N + N + H + +I++ F+ H +R I L VG+G +KPE
Sbjct: 157 --AAHCQSHSPWRNMIHLNVTRHGHYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L +E RK + E L L ++
Sbjct: 215 IKWL--LEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|312135434|ref|YP_004002772.1| tRNA pseudouridine synthase a [Caldicellulosiruptor owensensis OL]
gi|311775485|gb|ADQ04972.1| tRNA pseudouridine synthase A [Caldicellulosiruptor owensensis OL]
Length = 244
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 46/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q Q + TI + +A++K E+ + GRTD GV
Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNK-KTIQGTIEEAIKKLT----GEEVNLIGSGRTDRGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A Q K SK+ + ++ P LN+ LP DI V VP +SAR+
Sbjct: 56 HALNQKANFKTSSKIPT-------DKFPL--ALNSVLPGDISVKDAVEVPLDFSARYSAK 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y++P LD+DAM +A +Y +G +DF++ C +
Sbjct: 107 QKTYKYLIYNKKSRPALLRNYAYYYPYE-LDVDAMQRACEYFIGEYDFKSFCSAD----- 160
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ + H + +A+ + N C I + GFL++ R I + VG G K
Sbjct: 161 SEAKTTIRH--IYNAYL------TFENECIAIYITANGFLYNMARIIAGTILDVGAGKLK 212
Query: 223 PEIIQQLVD 231
P I +++
Sbjct: 213 PMDIPLIIE 221
>gi|389852268|ref|YP_006354502.1| tRNA pseudouridine synthase A [Pyrococcus sp. ST04]
gi|388249574|gb|AFK22427.1| tRNA pseudouridine synthase A [Pyrococcus sp. ST04]
Length = 266
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 36/292 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALKI Y G +HGFQ Q T+ +++AL + E S F RTD GVSA
Sbjct: 3 VALKIAYDGTRFHGFQRQPDV-RTVEGEIIRALNDAGI----EFSDFKGASRTDRGVSAR 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
V+ + + D+E M+ N+ D+ + + V + + RF +
Sbjct: 58 GNVIAI------------TTDDERILNPMVLNSRMEDVWIWGVAVVSDDFHPRFRATSKV 105
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQ 183
Y+Y+ P G +++ + + A+ +GTHDF +++ + + + +NV+
Sbjct: 106 YRYYLPCIGCNVEKIERCAEVFIGTHDFSAFSRVDGRDTI-------------RSIENVR 152
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ I + + FLW +R I+S + L G E I++++ K+ R P
Sbjct: 153 V-ERRGRIVVIEVEGRSFLWEMVRRIVSAIKLCSLGMLDREEIKEML-AGKFRRHRKVPP 210
Query: 244 VRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKD 295
E L L+ +++++ + D + + + + E + L + LGE+ D
Sbjct: 211 APPEGLILWDIKYESVKFKVDRKSLEYFQKKIVERFELFA----SLGELYYD 258
>gi|160894723|ref|ZP_02075498.1| hypothetical protein CLOL250_02274 [Clostridium sp. L2-50]
gi|156863657|gb|EDO57088.1| tRNA pseudouridine synthase A [Clostridium sp. L2-50]
Length = 245
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 117/276 (42%), Gaps = 50/276 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + L + Y G NYHG+Q+Q DN I + + L +T +E RTD+GV
Sbjct: 1 MKRVKLVVAYDGTNYHGWQVQ---DNGIT--IEEVLNRTISELVQEDIKVIGASRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V S++ PG++ + LN LP DI++ V + R+
Sbjct: 56 HACGNVAVFDTESRI--PGDK-------FSFALNQRLPDDIRIQESCEVDADFHPRYADT 106
Query: 121 FRNYKY-------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ Y+Y ++P +DI+ M++AA YLVG HDF++ C + G
Sbjct: 107 VKTYEYNILNRRFEMPSKRLYAAFCYYP---MDIERMNQAAAYLVGEHDFKSFC--SAGA 161
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V R + VT ++ I GFL++ +R I L VG G
Sbjct: 162 QVQTTVRTIYAVNVT----------KEDDMVHIRITGNGFLYNMVRIIAGTLMQVGTGLM 211
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+PE ++++ +E R P + L L ++
Sbjct: 212 EPERVKEI--LEARDRSKAGPTAVAKGLTLVEIRYE 245
>gi|383775804|ref|YP_005460370.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
gi|381369036|dbj|BAL85854.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
Length = 271
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 38/248 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q + T+A L +AL + L+ + GRTD+GV A
Sbjct: 7 LRLDVSYDGAGFSGWAAQPTR-RTVAGVLTEALGR--LVGPETPLGLTVAGRTDAGVHAT 63
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E+ + L+ L +P D +V A PVP+ + ARF FR
Sbjct: 64 GQVCHIDL------PIEDWERLSGSLLRRLAALMPPDARVRALRPVPDTFDARFSATFRR 117
Query: 124 YKY------WFPQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y+Y W P+ LD+D ++ AA L+G HDF CK
Sbjct: 118 YEYRVCDEQWGPEPLRRHDTLGWLRPLDLDRLNAAAAGLLGEHDFAAFCKRK-------- 169
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
HA A + + + +++ F +R ++ + VG G +PE
Sbjct: 170 ----EHATTIRAINRLDWRRDPDGVLVATVQADAFCQAMVRSLVGAMLFVGDGRREPEWP 225
Query: 227 QQLVDIEK 234
+L+ + +
Sbjct: 226 GRLLTLRE 233
>gi|358410531|gb|AEU09945.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp.
piscicida]
Length = 261
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 114/273 (41%), Gaps = 52/273 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q D ++ L KAL K E C GRTD+GV
Sbjct: 3 IALGIEYDGAKYFGWQRQREVD-SVQERLEKALAKIA----NEPVDVFCAGRTDAGVHGT 57
Query: 64 CQVV--TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV + + K+ + + +N +LP DI V + V + + ARF
Sbjct: 58 GQVVHFDVNVNRKMAA-----------WTMGVNAHLPSDIAVRWAAEVSDDFHARFTATA 106
Query: 122 RNYKYWFPQAGL----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y L D MH+A QYL+G +DF +
Sbjct: 107 RRYRYVIYNHALRPAILSSGVSHYHDELDEKKMHEAGQYLLGENDF------------TS 154
Query: 166 FRRLVTHAGVTSAWQNV-QFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
FR H S W+N+ N S N +I++ F+ H +R I L VG+G EKP
Sbjct: 155 FR--AVHCQSRSPWRNLMHLNVSRQGNYVIIDIKANAFVHHMVRNITGSLIKVGRGEEKP 212
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
E I+ L +E+ R + E L L ++
Sbjct: 213 EWIKWL--LEQKDRTLAGATAKAEGLYLVDVDY 243
>gi|374603290|ref|ZP_09676272.1| tRNA pseudouridine synthase A [Paenibacillus dendritiformis C454]
gi|374391159|gb|EHQ62499.1| tRNA pseudouridine synthase A [Paenibacillus dendritiformis C454]
Length = 273
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 115/275 (41%), Gaps = 38/275 (13%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + + Y G Y G+Q Q D TI + +A+ KE ++ GRTD+GV
Sbjct: 1 MRNIGMLLSYDGTAYSGYQTQPGRD-TIQGRIEEAIHMLT----KEHAAVTASGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVV-AWSPVPEKYSARFDC 119
A QVV S + P E + +N+ LP DI + AW PE + ARF
Sbjct: 56 HALGQVVNFATESSI--PIER-------WCPAMNSRLPDDIVIRDAWE-APESFHARFSA 105
Query: 120 LFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y + A LDI+AM +A Q+ VG HDF ++ +
Sbjct: 106 KRKTYRYSILAERTRDVFRRNVEFHHPAPLDIEAMRQALQHFVGEHDFTSVASPKSPK-L 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
N R + + N I F + GFL++ +R I L VG+G P
Sbjct: 165 TNVRTI--YEARLEHEPNANHEPGRGRIHVF-VTGNGFLYNMVRIIAGTLIWVGEGKFSP 221
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
+ I ++ + R+ P L L+ E+D
Sbjct: 222 DDIVPILAAKN--RESAGPTAVPHGLTLWSVEYDG 254
>gi|15790870|ref|NP_280694.1| tRNA pseudouridine synthase A [Halobacterium sp. NRC-1]
gi|169236616|ref|YP_001689816.1| tRNA pseudouridine synthase A [Halobacterium salinarum R1]
gi|24212587|sp|Q9HNP6.1|TRUA_HALSA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|229470757|sp|B0R6V1.1|TRUA_HALS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|10581435|gb|AAG20174.1| pseudouridylate synthase I [Halobacterium sp. NRC-1]
gi|167727682|emb|CAP14470.1| tRNA pseudouridine synthase TruA [Halobacterium salinarum R1]
Length = 266
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 106/263 (40%), Gaps = 33/263 (12%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFC 64
A ++ Y G YHGFQ Q +T+A L AL++ + + + +A GRTD+GVSA
Sbjct: 5 AFRVAYDGRPYHGFQRQPDV-STVAGELFGALRRLDVFDGAKPPGYAAAGRTDAGVSARA 63
Query: 65 QVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNY 124
Q V + LT LP I+V A + P ++ A D + R Y
Sbjct: 64 QTVAFDAPAWLTP-------------DAFTGALPDPIQVWAHADAPPEFHATHDAVARTY 110
Query: 125 -KYWF-PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNV 182
YW+ P + D A L GTHDF NL N N V + G
Sbjct: 111 VYYWYAPDSRATDDRAAGALDRLTGTHDFHNLTP-NTTNTVRELDATLDRDGA------- 162
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
+R+ GF +R ++S++ LV + + I L D E P
Sbjct: 163 --------FRVITVRAGGFCRELVRRVVSLVQLVTETGDTDRIDTVLGD-EPVAGPDGVP 213
Query: 243 MVRGEPLNLYHTEFDNLTWHYDE 265
PL L+ +D L++ DE
Sbjct: 214 PADPHPLVLHAVAYDGLSFTVDE 236
>gi|258646072|ref|ZP_05733541.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
gi|260403447|gb|EEW96994.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
Length = 246
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 41/240 (17%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G Y G+Q Q ++ TI L K L+K E+ GRTD+GV + QVV
Sbjct: 7 VQYDGTRYEGWQKQKRTEETIQGKLEKTLRKIT----GEEVQVIGAGRTDAGVHSLGQVV 62
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
++ + + E+ LN +LP DI + E++ +RF L + Y+Y
Sbjct: 63 NFHLKGRWKAEELET---------ALNGDLPDDIALKHMETAEERFHSRFSTLEKTYRYR 113
Query: 127 ---------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
W LDI+AM KAA +L+GT+DF + C GN +++
Sbjct: 114 IRTSTEKNVFERRFVWQYGKSLDIEAMKKAAAFLIGTYDFTSFC----GN-----KKMKK 164
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
A ++ + + + + GFL +R ++ L VG+G K E I +++
Sbjct: 165 SA--VRCISGIEMKEIKGEL-QIDFTGDGFLQGMVRILVGTLVEVGEGKRKAESIPAILE 221
>gi|456013300|gb|EMF46959.1| tRNA pseudouridine synthase A [Planococcus halocryophilus Or1]
Length = 247
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 108/246 (43%), Gaps = 41/246 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + I Y G + G+Q+Q S T+ L+K L+ I + GRTD+ V
Sbjct: 1 MKRLKATIAYDGSGFAGYQVQPDS-RTVQLELMKVLET---IHKGKVVQVVASGRTDAKV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV+ + G +LK LN LP DI+V + V + AR+
Sbjct: 57 HATGQVIHFDTELSIPISG---------WLKALNVLLPEDIRVNSIEEVDTSFHARYHTT 107
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y + ++ L+++AM A+Q ++GTHDF + C N VV
Sbjct: 108 GKTYRYKWDRSQIISPFTRSLMVHVKQPLNVEAMKNASQAIIGTHDFSSFCAAN--TAVV 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R V + + F + H N I GFL++ +R I L VG G K E
Sbjct: 166 DKVRTV---------RRLDFEE-HGNELHMIIEGTGFLYNMVRIIAGTLAEVGMGRRKAE 215
Query: 225 IIQQLV 230
++++V
Sbjct: 216 ELEEIV 221
>gi|296113461|ref|YP_003627399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
gi|416218358|ref|ZP_11624833.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169]
gi|416238144|ref|ZP_11631399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1]
gi|416244103|ref|ZP_11634297.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7]
gi|295921155|gb|ADG61506.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BBH18]
gi|326559732|gb|EGE10142.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169]
gi|326568129|gb|EGE18213.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7]
gi|326568548|gb|EGE18620.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1]
Length = 268
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 118/280 (42%), Gaps = 56/280 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A+ I + G Y G+Q Q A ++K E GRTD+GV A
Sbjct: 6 LAVGIEFIGTRYRGWQRQEEVIGVQA-----VIEKALSTIANESIELIAAGRTDAGVHAG 60
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
+ + + E S + +L+ N+ LP DI + P+P+ + ARF + R
Sbjct: 61 NMI------AHFVTHAERSAHS---WLRGTNSLLPDDIALRWVQPMPDDFHARFSAIARR 111
Query: 124 YKY------WFPQ----------AGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + P LDIDAM A+Q++VGTHDF + C+ N
Sbjct: 112 YRYITLNQPYRPAILHHQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSN----- 166
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R VTHA + H + +I++ GFL H +R IM LF VG+G P
Sbjct: 167 -QPVRTVTHANLFQ----------HGSYLILDIQADGFLHHMVRNIMGALFAVGRGEISP 215
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFDNL 259
E +L+ + P P + L YH F++L
Sbjct: 216 ETFYELMLAKNRTLAP--PTASADGLYFINAYYHKRFESL 253
>gi|456389439|gb|EMF54879.1| truA protein [Streptomyces bottropensis ATCC 25435]
Length = 288
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 96/235 (40%), Gaps = 39/235 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL+ + +E GRTD+GV A
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALR--TVTRSREAFELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P ++ LK L LPRD++V A P ++ARF ++R
Sbjct: 70 GQVAHVDL------PETVWREHHEKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRR 123
Query: 124 YKY------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
Y Y W A LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRSHVLWHDWA-LDVDAMNEAARLLLGEHDFAAYCKRR--EGATT 180
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R L Q + I +R+ F + +R ++ L VG G+
Sbjct: 181 IRTL----------QELSLVRGDDGIITATVRADAFCHNMVRSLIGALLFVGDGH 225
>gi|416157245|ref|ZP_11604988.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1]
gi|416221709|ref|ZP_11625889.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1]
gi|416231712|ref|ZP_11628839.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1]
gi|416233832|ref|ZP_11629480.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1]
gi|416245421|ref|ZP_11634473.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8]
gi|416252079|ref|ZP_11637914.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72]
gi|416255599|ref|ZP_11639269.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E]
gi|421780263|ref|ZP_16216752.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
gi|326559413|gb|EGE09838.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1]
gi|326564997|gb|EGE15197.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1]
gi|326566051|gb|EGE16211.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1]
gi|326572448|gb|EGE22440.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8]
gi|326572505|gb|EGE22494.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72]
gi|326574101|gb|EGE24049.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1]
gi|326576065|gb|EGE25984.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E]
gi|407812419|gb|EKF83204.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4]
Length = 268
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 118/280 (42%), Gaps = 56/280 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A+ I + G Y G+Q Q A ++K E GRTD+GV A
Sbjct: 6 LAVGIEFIGTRYRGWQRQEEVIGVQA-----VIEKALSTIANESIELIAAGRTDAGVHAG 60
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
+ + + E S + +L+ N+ LP DI + P+P+ + ARF + R
Sbjct: 61 NMI------AHFVTHAERSAHS---WLRGTNSLLPDDIALRWVQPMPDDFHARFSAIARR 111
Query: 124 YKY------WFPQ----------AGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + P LDIDAM A+Q++VGTHDF + C+ N
Sbjct: 112 YRYITLNQPYRPAILRHQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSN----- 166
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R VTHA + H + +I++ GFL H +R IM LF VG+G P
Sbjct: 167 -QPVRTVTHANLFQ----------HGSYLILDIQADGFLHHMVRNIMGALFAVGRGEISP 215
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFDNL 259
E +L+ + P P + L YH F++L
Sbjct: 216 ETFYELMLAKNRTLAP--PTASADGLYFINAYYHKRFESL 253
>gi|448679254|ref|ZP_21690091.1| tRNA pseudouridine synthase A [Haloarcula argentinensis DSM 12282]
gi|445771352|gb|EMA22409.1| tRNA pseudouridine synthase A [Haloarcula argentinensis DSM 12282]
Length = 275
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 108/277 (38%), Gaps = 43/277 (15%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKE--KSSFACCGRTDSGVSA 62
A ++ Y G YHGFQ Q D T+ L AL + + E E +A GRTD+GVSA
Sbjct: 3 AYRVAYDGRPYHGFQRQPDVD-TVEGRLRSALVRLSVCERGEGLPGRYAAAGRTDAGVSA 61
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
Q + + L+ N LP DI+V A + VPE + A D R
Sbjct: 62 RAQTIAFDAPAWLSP-------------AAFNGELPDDIRVWASADVPENFHATHDAAER 108
Query: 123 NYKYWFPQAGLDID----------AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
Y Y+ A D D A L GTHDF NL + G TH
Sbjct: 109 TYTYYL-YAPTDTDRPGHEPVDDGQWADAVDALTGTHDFHNLTSDDTG----------TH 157
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
V W D + +F + GF +R ++S+ V G+ + +++
Sbjct: 158 RTVDIDWA----RDGQFLVVQFT--AGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILSP 211
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVS 269
E P EPL L + N+ + DE V+
Sbjct: 212 EPVSGPDGVPPAAPEPLVLTDVRYPNVHFIRDEDAVA 248
>gi|358065580|ref|ZP_09152117.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
gi|356696219|gb|EHI57841.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
Length = 242
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 41/240 (17%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G Y G+Q Q +++NTI L + K E GRTD+GV A QV
Sbjct: 3 VQYDGTRYDGWQRQGNTENTIQSKLESVIGKMT----GEDVEIIGSGRTDAGVHATGQVA 58
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
+ + ++ T P E D +N LP DI V P+++ +R + + Y YW
Sbjct: 59 NVHMDTEKT-PQEIKD--------YVNQYLPDDIAVTQLEEAPDRFHSRLNATGKVYTYW 109
Query: 128 FPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
A LD++AM +AA+ L GTHDF++ C N ++
Sbjct: 110 IETAPKCSVFQRKYIYTLGRKLDVEAMRQAAKLLCGTHDFKSFCSNK------NMKKSTV 163
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
T + Q + E ++ GFL++ +R ++ L VG G P+ ++++++
Sbjct: 164 RTVKTISIQE------RGSGLEIHVIGDGFLYNMVRILVGTLIEVGLGKRTPDSMREILE 217
>gi|121611771|ref|YP_999578.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2]
gi|166229848|sp|A1WSF3.1|TRUA_VEREI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|121556411|gb|ABM60560.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2]
Length = 272
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 103/247 (41%), Gaps = 38/247 (15%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G Y G+Q Q S T+ L AL + S C GRTD+GV
Sbjct: 3 MALGISYNGQAYCGWQSQPSV-RTVQDALEAALGRFA----THPVSTLCAGRTDAGVHGL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + L P +++ N LP DI V VP+ + AR L R
Sbjct: 58 MQVVHFD--TPLDRPAAS-------WVRGTNGFLPADIAVQWAQAVPDSFHARASALARR 108
Query: 124 YKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVN 165
Y Y Q+ LD DAM +AA YLVG HDF + V
Sbjct: 109 YAYVLLQSPVRPSVESGRVGWVCHRLDHDAMQQAADYLVGEHDFSAFRASTCQAPSPVKT 168
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNIC--EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
RR+ G++ Q+ + C F + FL H IR IM L +GQG + P
Sbjct: 169 LRRI----GISCRGQSPPHPALGWSPCYWRFEFVANAFLHHMIRNIMGCLVAIGQGKQSP 224
Query: 224 EIIQQLV 230
+ +QQL+
Sbjct: 225 QWMQQLL 231
>gi|312622107|ref|YP_004023720.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kronotskyensis
2002]
gi|312202574|gb|ADQ45901.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kronotskyensis
2002]
Length = 244
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 109/249 (43%), Gaps = 46/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q Q + TI + +A++K E+ + GRTD GV
Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNK-KTIQGTIEEAIKKLT----GEEVNLIGSGRTDRGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A Q K SK+ + ++ P LN+ LP DI + VP +SAR+
Sbjct: 56 HALNQKANFKTSSKIPT-------DKFPL--ALNSVLPGDISIKDAIEVPLDFSARYSAR 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y++P LD+DAM + +Y +G +DF++ C +
Sbjct: 107 QKTYKYLIYNKKSRPALLRNYAYYYPYQ-LDVDAMQRTCEYFIGEYDFKSFCSAD-SEAK 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
RR V +A +T N C I + GFL++ R I + VG G K
Sbjct: 165 TTIRR-VYNAYLT-----------FENECIAIYITANGFLYNMARIIAGTILDVGAGKLK 212
Query: 223 PEIIQQLVD 231
P I +++
Sbjct: 213 PMDIPLIIE 221
>gi|14591061|ref|NP_143136.1| tRNA pseudouridine synthase A [Pyrococcus horikoshii OT3]
gi|3915167|sp|O58941.1|TRUA_PYRHO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3257659|dbj|BAA30342.1| 262aa long hypothetical pseudouridylate synthase [Pyrococcus
horikoshii OT3]
Length = 262
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 38/294 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ALKI Y G +HGFQ Q + T+ ++KAL + ++ ++ KS+ RTD GVSA
Sbjct: 3 VALKIAYDGTKFHGFQRQPNV-RTVEGEIIKALNNSGIMFNELKSA----SRTDKGVSAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
VV + ++D + +LN L +D+ V++ VP + RF +
Sbjct: 58 GNVVAI-----------TTEDERITNPMILNAKL-KDVWVLSAVKVPSDFHPRFWARSKV 105
Query: 124 YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL-VTHAGVTSAWQNV 182
Y+Y+ P LD++ + + ++ +G HDF +++ V + R+ V G
Sbjct: 106 YRYYLPSFDLDVEKVKECSKLFLGVHDFSAFSRVDGRETVRSIDRIEVLDLG-------- 157
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV--DIEKYPRKPV 240
+ + ++ FLW +R I+ L L G G E +++++ EK + P
Sbjct: 158 -------PVLAIEVEAKSFLWEMVRRIVKTLELCGLGKLSSEEVRKMLRGKFEKSRKVPP 210
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
P E L L ++ + + + + +D+ + + +A +L +M K
Sbjct: 211 AP---AEGLLLVEVKYKGIEFPIHDKALEKFRKDMEKRFREKIARAYLLWDMTK 261
>gi|302536280|ref|ZP_07288622.1| tRNA pseudouridine synthase A [Streptomyces sp. C]
gi|302445175|gb|EFL16991.1| tRNA pseudouridine synthase A [Streptomyces sp. C]
Length = 287
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 103/245 (42%), Gaps = 40/245 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G ++ G+ Q + T+ L ALQ + KE GRTD+GV A
Sbjct: 12 VRLDLSYDGKDFSGWAKQRTL-RTVQGELESALQTVMRL--KEPVELTVAGRTDAGVHAR 68
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + ++ + E D L+ L LP DI+V + PE ++ARF ++R
Sbjct: 69 GQVAQFDLAEEVWA---EHHDK---LLRRLAGRLPHDIRVWKAAEAPEGFNARFSAIWRR 122
Query: 124 YKY------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
Y Y W Q LD+DAM++AA LVG HDF CK G
Sbjct: 123 YAYRVGDHRAGVDPLRRGHVLWH-QWPLDVDAMNEAAAALVGEHDFAAYCKKR--EGATT 179
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R L Q + + + +R+ F + +R ++ L VG G+ E
Sbjct: 180 IRTL----------QQLSWERGEDGVVTATVRADAFCHNMVRSLVGALLHVGDGHRPVEW 229
Query: 226 IQQLV 230
Q++
Sbjct: 230 PGQVL 234
>gi|153813476|ref|ZP_01966144.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174]
gi|149830420|gb|EDM85512.1| tRNA pseudouridine synthase A [Ruminococcus obeum ATCC 29174]
Length = 250
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 42/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + L + Y G NY G+QIQ + TI L AL EK RTD+GV
Sbjct: 5 MKRVGLVVAYDGTNYSGWQIQPNG-ITIQGVLNDALTDLL----GEKIEIMGASRTDAGV 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V +++ PGE+ + Y LN LP DI++ V + R+
Sbjct: 60 HALGNVAVFDTNTRI--PGEK-----ISY--ALNQRLPEDIRIQLSEEVEPDFHPRYCDS 110
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y +F LD+D M +A YL+G HDF + C G G
Sbjct: 111 EKTYEYRILNRKFPVPTERLYSYFYHYKLDVDKMREATSYLIGRHDFASFC----GTGAQ 166
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ T G+ W++ +I ++ +GFL++ +R I L VG G PE
Sbjct: 167 VKSTVRTLTGI-DIWRD-------GDIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPE 218
Query: 225 IIQQLVD 231
+++++D
Sbjct: 219 RVKKILD 225
>gi|323141117|ref|ZP_08076020.1| tRNA pseudouridine synthase A [Phascolarctobacterium succinatutens
YIT 12067]
gi|322414383|gb|EFY05199.1| tRNA pseudouridine synthase A [Phascolarctobacterium succinatutens
YIT 12067]
Length = 250
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 102/236 (43%), Gaps = 42/236 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G YHGFQ Q + T+ + L +AL C EK A GRTD+GV
Sbjct: 1 MRTIKLVVAYDGSAYHGFQKQKNV-QTVQNVLEEALTMLC----GEKVVTAGSGRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q VT ++ ++ + LP DI VV+ +PE + ARF
Sbjct: 56 HALAQTVTFTTNGRIPCAN---------LVRAAASLLPEDIVVVSAEEMPEGFHARFSAR 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
++ Y Y W + L++ AM++AA+ L+GTHDF +G V
Sbjct: 107 WKTYHYKLLVNEHVNPFMVRYAWQLRQQLEVKAMNEAAELLLGTHDFSAFRS----SGSV 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ + T + WQ F I GFL+H +R I+ + VG G
Sbjct: 163 DTSPIKTI--FAAKWQQ------QGEEILFRISGDGFLYHMVRNIVWSMVQVGMGK 210
>gi|152984048|ref|YP_001347395.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7]
gi|452881429|ref|ZP_21958189.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa VRFPA01]
gi|150959206|gb|ABR81231.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7]
gi|452182352|gb|EME09370.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa VRFPA01]
Length = 285
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 103/248 (41%), Gaps = 49/248 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q + ++ L +AL K E C GRTD+ V A
Sbjct: 20 IALGVEYKGSRYRGWQRQEAGVPSVQEALERALSKVA----AESVGVICAGRTDAAVHAS 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P + ++ N NLP DI V +P + ARF + R
Sbjct: 76 GQVVHFD--TAVERPLKA-------WVMGTNANLPGDISVTWARVMPAHFHARFSAMARR 126
Query: 124 YKYW----------------FPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + LDI+ M +AAQ LVGTHDF + C+
Sbjct: 127 YRYAIYNDPIRPAHMAEEVTWNHRPLDIERMREAAQVLVGTHDFTSFRAVQCQARSPVKT 186
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
++ RL+ H + +IR FL H +R I VL +G G
Sbjct: 187 MHHVRLLEHG----------------RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPI 230
Query: 224 EIIQQLVD 231
E +++++
Sbjct: 231 EWAKEVLE 238
>gi|295109363|emb|CBL23316.1| pseudouridylate synthase I [Ruminococcus obeum A2-162]
Length = 246
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 42/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + L + Y G NY G+QIQ + TI L AL EK RTD+GV
Sbjct: 1 MKRVGLVVAYDGTNYSGWQIQPNG-ITIQGVLNDALSDLL----GEKIEIMGASRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V +++ PGE+ + Y LN LP DI++ V + R+
Sbjct: 56 HALGNVAVFDTNTRI--PGEK-----ISY--ALNQRLPEDIRIQLSEEVEPDFHPRYCDS 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y +F LDI+ M +A YL+G HDF + C G V
Sbjct: 107 EKTYEYRILNRKFPVPTERLYSYFYHYKLDIEKMREATSYLIGRHDFASFC--GTGAQVK 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R +T V W++ +I ++ +GFL++ +R I L VG G PE
Sbjct: 165 STVRTITGIDV---WRD-------GDIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPE 214
Query: 225 IIQQLVD 231
+++++D
Sbjct: 215 RVKKILD 221
>gi|257053070|ref|YP_003130903.1| tRNA pseudouridine synthase A [Halorhabdus utahensis DSM 12940]
gi|256691833|gb|ACV12170.1| tRNA pseudouridine synthase [Halorhabdus utahensis DSM 12940]
Length = 275
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 107/263 (40%), Gaps = 32/263 (12%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEK--SSFACCGRTDSGVSA 62
A +I Y G +HGFQ Q T++ +L AL++ ++ED + +A GRTD+GVSA
Sbjct: 8 AFRIAYDGRPFHGFQRQPDV-ATVSDAILDALRELDVLEDGDNVPPGYAAAGRTDAGVSA 66
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
Q V L SP LN+ LP D++ A + VP ++ A D + R
Sbjct: 67 LAQTVAFDCPDWL-SPA------------ALNSELPADVRAWASADVPAEFHATHDAVAR 113
Query: 123 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNV 182
Y Y + A L G HDF N + G R L A
Sbjct: 114 EYTYHLHAPDASVSRAGDALDALAGEHDFHNFTPDDTG----TVRDLTGEAR-------- 161
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
S + +R+ GF +R ++V+ + G + + I+QL+ +
Sbjct: 162 ----SEGDFLVVTLRADGFPRQFVRRAVTVIDALASGVAELDRIEQLLGDDPVEGPAGVA 217
Query: 243 MVRGEPLNLYHTEFDNLTWHYDE 265
E L L E+ L++ DE
Sbjct: 218 PAAPEALVLTAVEYPGLSFERDE 240
>gi|447917429|ref|YP_007397997.1| tRNA pseudouridine synthase A [Pseudomonas poae RE*1-1-14]
gi|445201292|gb|AGE26501.1| tRNA pseudouridine synthase A [Pseudomonas poae RE*1-1-14]
Length = 274
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 65 GQVVHFDTQAERTMKA---------WVMGANINLPHDVSVTWAKVMPAHFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AAQ+LVG HDF C+
Sbjct: 116 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAEAAQHLVGVHDFSAFRAGQCQAKSPIK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 175 EVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERP 218
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 219 VEWAREVLE 227
>gi|398870515|ref|ZP_10625839.1| pseudouridylate synthase I [Pseudomonas sp. GM74]
gi|398888740|ref|ZP_10642909.1| pseudouridylate synthase I [Pseudomonas sp. GM55]
gi|398954217|ref|ZP_10675846.1| pseudouridylate synthase I [Pseudomonas sp. GM33]
gi|398152677|gb|EJM41190.1| pseudouridylate synthase I [Pseudomonas sp. GM33]
gi|398190277|gb|EJM77510.1| pseudouridylate synthase I [Pseudomonas sp. GM55]
gi|398208285|gb|EJM95022.1| pseudouridylate synthase I [Pseudomonas sp. GM74]
Length = 284
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + + N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WTMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYL+GTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEVTWNHRP-LDVERMAEAAQYLLGTHDFSAFRAGQCQAKSPI 183
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 184 KELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGER 227
Query: 222 KPEIIQQLVD 231
E ++++++
Sbjct: 228 PVEWMKEVLE 237
>gi|398914714|ref|ZP_10657013.1| pseudouridylate synthase I [Pseudomonas sp. GM49]
gi|398177722|gb|EJM65391.1| pseudouridylate synthase I [Pseudomonas sp. GM49]
Length = 284
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + + N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WTMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYL+GTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEVTWNHRP-LDVERMAEAAQYLLGTHDFSAFRAGQCQAKSPI 183
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 184 KELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGER 227
Query: 222 KPEIIQQLVD 231
E ++++++
Sbjct: 228 PVEWMKEVLE 237
>gi|398928066|ref|ZP_10663260.1| pseudouridylate synthase I [Pseudomonas sp. GM48]
gi|398168999|gb|EJM56995.1| pseudouridylate synthase I [Pseudomonas sp. GM48]
Length = 284
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + + N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WTMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYL+GTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEVTWNHRP-LDVERMAEAAQYLLGTHDFSAFRAGQCQAKSPI 183
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 184 KELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGER 227
Query: 222 KPEIIQQLVD 231
E ++++++
Sbjct: 228 PVEWMKEVLE 237
>gi|424942487|ref|ZP_18358250.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa NCMG1179]
gi|346058933|dbj|GAA18816.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa NCMG1179]
Length = 285
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y+G Y G+Q Q + ++ L +AL K E C GRTD+ V A
Sbjct: 20 IALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVA----AEPVGVICAGRTDAAVHAS 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P + ++ N NLP DI V +P + ARF + R
Sbjct: 76 GQVVHFD--TAVERPLKA-------WVMGTNANLPADISVTWARGMPAHFHARFSAMARR 126
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI M +AAQ LVGTHDF + C+
Sbjct: 127 YRYAIYNDPIRPAHLAEEVTWNHRP-LDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVK 185
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ RL+ H + +IR FL H +R I VL +G G
Sbjct: 186 TMHHVRLLEHG----------------RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERP 229
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 230 IEWAKEVLE 238
>gi|227824316|ref|ZP_03989148.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21]
gi|352683828|ref|YP_004895812.1| tRNA pseudouridine synthase A [Acidaminococcus intestini RyC-MR95]
gi|226904815|gb|EEH90733.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21]
gi|350278482|gb|AEQ21672.1| tRNA pseudouridine synthase A [Acidaminococcus intestini RyC-MR95]
Length = 253
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 104/235 (44%), Gaps = 41/235 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
+ I + Y G NY GFQ Q + L KAL T L ED S GRTD+GV
Sbjct: 3 KTIMAVVAYDGTNYQGFQRQKDYGVGVQQVLEKALS-TALHED---ISIKAAGRTDAGVH 58
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QV++ + S + P E Y + L + LP DI + P+ + ARFD L
Sbjct: 59 ALGQVISFETSSPI--PPEN-------YRRALQHLLPPDIAIREAFIKPDGFHARFDALD 109
Query: 122 RNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y+Y W ++ L + AM++AA LVGTHDF + N G+ +
Sbjct: 110 KTYRYTVLYAPLPDPCARRYAWEVRSSLTLAAMNEAAALLVGTHDFSSF--KNQGSEKTS 167
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R + A T + +F F IR GFL+ +R I+ L VG G
Sbjct: 168 PVRTLYEAYWTQ--EKERFT--------FTIRGDGFLYRMVRNIVGCLVKVGTGE 212
>gi|440739161|ref|ZP_20918682.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BRIP34879]
gi|440380151|gb|ELQ16722.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BRIP34879]
Length = 274
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 65 GQVVHFDTQAERTMKA---------WVMGANINLPHDVSVTWAKVMPAHFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AAQ+LVG HDF C+
Sbjct: 116 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAEAAQHLVGVHDFSAFRAGQCQAKSPIK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 175 EVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERP 218
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 219 VEWAREVLE 227
>gi|422640315|ref|ZP_16703742.1| tRNA pseudouridine synthase A [Pseudomonas syringae Cit 7]
gi|440741961|ref|ZP_20921292.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP39023]
gi|330952706|gb|EGH52966.1| tRNA pseudouridine synthase A [Pseudomonas syringae Cit 7]
gi|440378298|gb|ELQ14923.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP39023]
Length = 274
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 65 GQVVHFDTQAERTMKA---------WVMGANINLPHDVSVTWARVMPATFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 116 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G
Sbjct: 175 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERP 218
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 219 VEWAREVLE 227
>gi|346311579|ref|ZP_08853582.1| tRNA pseudouridine synthase A [Collinsella tanakaei YIT 12063]
gi|345900642|gb|EGX70462.1| tRNA pseudouridine synthase A [Collinsella tanakaei YIT 12063]
Length = 278
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 46/276 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G + G+ Q T+A + +ALQ L D E C GRTD+GV A
Sbjct: 19 IVLCVGYDGARFSGYAEQ-PGQLTVAGEIRRALQ-VFLRRDVE---LTCAGRTDAGVHAI 73
Query: 64 CQVVTLKIRSKLTSPGEESDDNELP--YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
Q V+ P ES+ L +++ + LP DI + +SARFD
Sbjct: 74 SQYVSF--------PAYESELEILRKRWMRAMAALLPSDISLNQVYHASPGFSARFDARA 125
Query: 122 RNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKM--NVGNGV 163
R Y Y W+ + LD+ AM +AA LVG HDF++ CK+ VG
Sbjct: 126 RTYTYRIATGESKPLLTRNYCWWHRMPLDVGAMERAAACLVGEHDFKSFCKVASAVGKPT 185
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
F R V+ A Q + + F I FL +R I+ L VG G
Sbjct: 186 CRFVREVSFA------SERQLGE---ELIAFTITGNAFLHSMVRTIVGSLVEVGSGRRDE 236
Query: 224 E-IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
E + Q L ++ P P + L + E+D+
Sbjct: 237 EWLAQALAACDRLAAGPTAP---AQGLCFMNVEYDD 269
>gi|339445580|ref|YP_004711584.1| pseudouridylate synthase [Eggerthella sp. YY7918]
gi|338905332|dbj|BAK45183.1| pseudouridylate synthase [Eggerthella sp. YY7918]
Length = 279
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 102/251 (40%), Gaps = 47/251 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G + GF Q T+ L +ALQ D E + C GRTD+GV A
Sbjct: 30 LALTVSYNGAPFSGFARQ-PGQLTVQGDLEEALQ-LLFRRDIETT---CAGRTDAGVHAL 84
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFR 122
QVV+ + + LP L+ N L D I V P +SARFD R
Sbjct: 85 GQVVSFDVTDA------DLAGRSLPSLRRSLNALTHDAITVREVEPKRLGFSARFDAQAR 138
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y WF GLD+ AM K AQYL+G HDF++ C
Sbjct: 139 EYHYYLCVDSTNPIFMRDFSWFVPGGLDLTAMEKGAQYLLGEHDFKSFC----------- 187
Query: 167 RRLVTHAGVTSAWQNVQFNDSH------HNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
L A +N++ H NI + FL +R I+ L +VG+G
Sbjct: 188 --LAASAVDKPTHRNIREISFHPETIMGENILAIKVVGNAFLHSMVRTIVGTLVMVGRGQ 245
Query: 221 EKPEIIQQLVD 231
+ ++++
Sbjct: 246 RPATWVAEVLE 256
>gi|426410342|ref|YP_007030441.1| tRNA pseudouridine synthase A [Pseudomonas sp. UW4]
gi|426268559|gb|AFY20636.1| tRNA pseudouridine synthase A [Pseudomonas sp. UW4]
Length = 284
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + + N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WTMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AAQYL+GTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEVTWNHRP-LDVERMAEAAQYLLGTHDFSAFRAGQCQAKSPI 183
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 184 KELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGER 227
Query: 222 KPEIIQQLVD 231
E ++++++
Sbjct: 228 PVEWMKEVLE 237
>gi|116051110|ref|YP_790059.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa UCBPP-PA14]
gi|115586331|gb|ABJ12346.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa UCBPP-PA14]
Length = 285
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y+G Y G+Q Q + ++ L +AL K E C GRTD+ V A
Sbjct: 20 IALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVA----AEPVGVICAGRTDAAVHAS 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P + ++ N NLP DI V +P + ARF + R
Sbjct: 76 GQVVHFD--TAVERPLKA-------WVMGTNANLPADISVTWARVMPAHFHARFSAMARR 126
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI M +AAQ LVGTHDF + C+
Sbjct: 127 YRYAIYNDPIRPAHLAEEVTWNHRP-LDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVK 185
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ RL+ H + +IR FL H +R I VL +G G
Sbjct: 186 TMHHVRLLEHG----------------RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERP 229
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 230 IEWAKEVLE 238
>gi|312793879|ref|YP_004026802.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181019|gb|ADQ41189.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 244
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 109/249 (43%), Gaps = 46/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q Q + TI + +A++K E+ + GRTD GV
Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNK-KTIQGTIEEAIKKLT----GEEVNLIGSGRTDRGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A Q K SK+ + ++ P LN+ LP DI + VP +SAR+
Sbjct: 56 HALNQKANFKTNSKIPT-------DKFPL--ALNSVLPGDISIKDAVEVPLDFSARYSAK 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y +P LD+DAM +A +Y +G +DF++ C +
Sbjct: 107 QKTYKYLIYNKKSRPALLRNYAYHYPYE-LDVDAMQRACEYFIGEYDFKSFCSAD-SEAK 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
RR V +A +T N C I + GFL++ R I + VG G K
Sbjct: 165 TTIRR-VYNAYLT-----------FENECIAIYITANGFLYNMARIIAGTILDVGAGKLK 212
Query: 223 PEIIQQLVD 231
P I +++
Sbjct: 213 PMDIPLVIE 221
>gi|311105424|ref|YP_003978277.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans A8]
gi|310760113|gb|ADP15562.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans A8]
Length = 269
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 111/275 (40%), Gaps = 48/275 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +AL + Y G + G+Q Q T+ L AL C + K + C GRTD+GV
Sbjct: 1 MSRVALGLAYDGSAWQGWQTQPHR-QTVQDTLEAALGSFCGV--KGPVATICAGRTDTGV 57
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV L E D +++ +N LP I V PV +++ ARF
Sbjct: 58 HGAMQVVHLDT---------ELDRRMESWVRGVNAFLPSSISVQWAQPVSDEFHARFSAR 108
Query: 121 FRNYKY-----------WFPQAG-----LDIDAMHKAAQYLVGTHDFRNL--CKMNVGNG 162
R Y Y W +AG LD+DAM AA L+G HDF + + +
Sbjct: 109 ARTYVYLLWRGRVRPALWAGRAGWCFQPLDVDAMRTAANALLGEHDFSSFRSSQCQAKHP 168
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V + RL D F +++ FL H +R IM L +GQG E
Sbjct: 169 VRHLYRLDI--------------DERGPFLVFTLKANAFLHHMVRNIMGALLQIGQGREP 214
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+ + QL+ RK P P LY + D
Sbjct: 215 VDWMAQLLSWRD--RKLGAPTF--APDGLYLSAID 245
>gi|408355518|ref|YP_006844049.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
gi|407726289|dbj|BAM46287.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
Length = 248
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 120/276 (43%), Gaps = 49/276 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR +A+ I Y G NY G+QIQ + TI + AL K + E GRTD+GV
Sbjct: 1 MRYLAI-ISYDGSNYSGYQIQ-PNQLTIQAVIEAALTK---MHKGEPVKITASGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV+ E D E + K LN+ LP DI V+ V E + ARFD +
Sbjct: 56 HAYGQVIHFD---------SELDIPESNWKKALNSLLPGDIVVLDVKQVSENFHARFDAI 106
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNV---GN 161
+ Y Y + L++D M++A Q L+G HDF C N G+
Sbjct: 107 KKTYIYTILNSADANPFEINYCAHVKERLNVDLMNQALQDLIGEHDFTAFCAANSYVKGD 166
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ R + HA + Q V +N F++ GFL++ +R I+ L +G G
Sbjct: 167 KI----RTIYHA----SCQRV------NNKVVFSVTGNGFLYNMVRIIVGTLIEIGLGQR 212
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I+++ IE R + L L E+D
Sbjct: 213 PATDIKRI--IESKDRTQAGKTAPPQGLYLNAVEYD 246
>gi|15598310|ref|NP_251804.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO1]
gi|107102663|ref|ZP_01366581.1| hypothetical protein PaerPA_01003728 [Pseudomonas aeruginosa PACS2]
gi|218890685|ref|YP_002439549.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa LESB58]
gi|254236084|ref|ZP_04929407.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719]
gi|254241809|ref|ZP_04935131.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192]
gi|296388384|ref|ZP_06877859.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAb1]
gi|313108437|ref|ZP_07794441.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016]
gi|386057915|ref|YP_005974437.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa M18]
gi|386067149|ref|YP_005982453.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa NCGM2.S1]
gi|392983161|ref|YP_006481748.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa DK2]
gi|416860906|ref|ZP_11914441.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 138244]
gi|416885612|ref|ZP_11922526.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 152504]
gi|418588632|ref|ZP_13152636.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa MPAO1/P1]
gi|418593267|ref|ZP_13157117.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa MPAO1/P2]
gi|419752559|ref|ZP_14278966.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PADK2_CF510]
gi|421152962|ref|ZP_15612530.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa ATCC 14886]
gi|421159509|ref|ZP_15618639.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa ATCC 25324]
gi|421517644|ref|ZP_15964318.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO579]
gi|451987872|ref|ZP_21936023.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 18A]
gi|8134770|sp|O87016.1|TRUA_PSEAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|9949225|gb|AAG06502.1|AE004735_9 tRNA-pseudouridine synthase I [Pseudomonas aeruginosa PAO1]
gi|3237313|gb|AAC23941.1| HisT [Pseudomonas aeruginosa PAO1]
gi|126168015|gb|EAZ53526.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719]
gi|126195187|gb|EAZ59250.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192]
gi|218770908|emb|CAW26673.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa LESB58]
gi|310880943|gb|EFQ39537.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016]
gi|334833745|gb|EGM12789.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 152504]
gi|334837174|gb|EGM15947.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 138244]
gi|347304221|gb|AEO74335.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa M18]
gi|348035708|dbj|BAK91068.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa NCGM2.S1]
gi|375040503|gb|EHS33262.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa MPAO1/P1]
gi|375047873|gb|EHS40410.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa MPAO1/P2]
gi|384401099|gb|EIE47455.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PADK2_CF510]
gi|392318666|gb|AFM64046.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa DK2]
gi|404347126|gb|EJZ73475.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO579]
gi|404524640|gb|EKA34967.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa ATCC 14886]
gi|404546975|gb|EKA55998.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa ATCC 25324]
gi|451754419|emb|CCQ88546.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa 18A]
gi|453043118|gb|EME90852.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA21_ST175]
Length = 285
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y+G Y G+Q Q + ++ L +AL K E C GRTD+ V A
Sbjct: 20 IALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVA----AEPVGVICAGRTDAAVHAS 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P + ++ N NLP DI V +P + ARF + R
Sbjct: 76 GQVVHFD--TAVERPLKA-------WVMGTNANLPADISVTWARVMPAHFHARFSAMARR 126
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI M +AAQ LVGTHDF + C+
Sbjct: 127 YRYAIYNDPIRPAHLAEEVTWNHRP-LDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVK 185
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ RL+ H + +IR FL H +R I VL +G G
Sbjct: 186 TMHHVRLLEHG----------------RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERP 229
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 230 IEWAKEVLE 238
>gi|355641049|ref|ZP_09052036.1| tRNA pseudouridine synthase A [Pseudomonas sp. 2_1_26]
gi|354831075|gb|EHF15104.1| tRNA pseudouridine synthase A [Pseudomonas sp. 2_1_26]
Length = 285
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y+G Y G+Q Q + ++ L +AL K E C GRTD+ V A
Sbjct: 20 IALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVA----AEPVGVICAGRTDAAVHAS 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P + ++ N NLP DI V +P + ARF + R
Sbjct: 76 GQVVHFD--TAVERPLKA-------WVMGTNANLPADISVTWARVMPAHFHARFSAMARR 126
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI M +AAQ LVGTHDF + C+
Sbjct: 127 YRYAIYNDPIRPAHLAEEITWNHRP-LDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVK 185
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ RL+ H + +IR FL H +R I VL +G G
Sbjct: 186 TMHHVRLLEHG----------------RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERP 229
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 230 IEWAKEVLE 238
>gi|421166735|ref|ZP_15624967.1| tRNA pseudouridine synthase A, partial [Pseudomonas aeruginosa ATCC
700888]
gi|404537206|gb|EKA46816.1| tRNA pseudouridine synthase A, partial [Pseudomonas aeruginosa ATCC
700888]
Length = 278
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y+G Y G+Q Q + ++ L +AL K E C GRTD+ V A
Sbjct: 13 IALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVA----AEPVGVICAGRTDAAVHAS 68
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P + ++ N NLP DI V +P + ARF + R
Sbjct: 69 GQVVHFD--TAVERPLKA-------WVMGTNANLPADISVTWARVMPAHFHARFSAMARR 119
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI M +AAQ LVGTHDF + C+
Sbjct: 120 YRYAIYNDPIRPAHLAEEVTWNHRP-LDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVK 178
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ RL+ H + +IR FL H +R I VL +G G
Sbjct: 179 TMHHVRLLEHG----------------RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERP 222
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 223 IEWAKEVLE 231
>gi|398784960|ref|ZP_10548081.1| tRNA pseudouridine synthase A [Streptomyces auratus AGR0001]
gi|396994850|gb|EJJ05877.1| tRNA pseudouridine synthase A [Streptomyces auratus AGR0001]
Length = 284
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 39/239 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL+ + KE GRTD+GV A
Sbjct: 12 VRLDLSYDGAEFSGWAKQAGGRRTVQGEIEDALR--TVTRSKETYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E ++ L+ L LP+D++V + P ++ARF ++R
Sbjct: 70 GQVAHVDL------PAEVWAEHADKLLRRLAGRLPKDVRVWRVAEAPYGFNARFSAIWRR 123
Query: 124 YKY------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
Y Y W LD+DAM++A++ L+G HDF CK G
Sbjct: 124 YAYRVTDHHGGVDPLLRSHVLWHDWE-LDVDAMNEASRPLLGEHDFAAYCKRR--EGATT 180
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R L Q + + I +R+ F + +R ++ + VG G+ P+
Sbjct: 181 IRTL----------QELSWERGADGIITATVRADAFCHNMVRSLVGAMLFVGDGHRAPD 229
>gi|424071386|ref|ZP_17808812.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407998995|gb|EKG39389.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 284
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 75 GQVVHFDTQAERTLKA---------WVMGANINLPHDVSVTWARVMPATFHARFKAIARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 126 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G
Sbjct: 185 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERP 228
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 229 VEWAREVLE 237
>gi|406878399|gb|EKD27313.1| hypothetical protein ACD_79C00762G0001 [uncultured bacterium]
Length = 258
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 42/237 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I L I Y GF+YHG+QIQ+++ TI + +A+ + I+DK + A RTD+GV
Sbjct: 16 RNIRLNISYNGFHYHGWQIQSNA-KTIQGEIKEAI--SVFIKDKIRIFGA--SRTDTGVH 70
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QV S T +E+ ++ LN LP DI + + VP+ ++AR
Sbjct: 71 ALGQVANFYTNSDKTC-------DEIAWI--LNKRLPGDINIKSALDVPKDFNARRSAKG 121
Query: 122 RNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
++Y+Y W P LDID+M A++ L+GTHDF +
Sbjct: 122 KHYRYKIWAGYQKPVFEKKLVYWCPCRDLDIDSMICASKKLIGTHDFSSFAS-------- 173
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
N ++++ A ++ D N+ F+++ FL+ +R I LF +G+G +
Sbjct: 174 NSKKIIEDKIRHVAEIEIKKED---NLIVFDVKGVSFLYKMVRGICGTLFEMGRGKK 227
>gi|398864038|ref|ZP_10619579.1| pseudouridylate synthase I [Pseudomonas sp. GM78]
gi|398246088|gb|EJN31589.1| pseudouridylate synthase I [Pseudomonas sp. GM78]
Length = 284
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 106/249 (42%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQVSGVLTVQETLENALSKVA----DSPVSLLCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV + + + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDTQVERSMKA---------WVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AA+YLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRPLDVERMAEAARYLVGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 185 ELHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERP 228
Query: 223 PEIIQQLVD 231
E ++++++
Sbjct: 229 VEWMKEVLE 237
>gi|422620780|ref|ZP_16689454.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica
str. M301072]
gi|424066736|ref|ZP_17804199.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|443644810|ref|ZP_21128660.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
B64]
gi|330901134|gb|EGH32553.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica
str. M301072]
gi|408002025|gb|EKG42295.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|443284827|gb|ELS43832.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
B64]
Length = 284
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 75 GQVVHFDTQAERTLKA---------WVMGANINLPHDVSVTWARVMPATFHARFKAIARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 126 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G
Sbjct: 185 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERP 228
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 229 VEWAREVLE 237
>gi|225377724|ref|ZP_03754945.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM
16841]
gi|225210401|gb|EEG92755.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM
16841]
Length = 245
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 106/248 (42%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M + I Y G Y G+Q Q S+ TI + L + GRTD+GV
Sbjct: 1 MNNYKITIQYDGTRYKGWQGQNSTGLTIQGKIEAVLGQMA----GHAVEVIGSGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A QV I T E L LN+ LP DI V+A V E++ +R+
Sbjct: 57 HAKGQVANFHIEEHFT---------EGKILSYLNHYLPDDIAVIAVEQVDERFHSRYAAK 107
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
D R Y+Y + + LD++ M +AA YL+GTHDF + C GN
Sbjct: 108 KKTYRYHIHMGEISDVFERKYEYQYEKT-LDVERMKEAASYLIGTHDFTSFC----GN-- 160
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ + V + ++ + F +++ + R GFL + +R + L VG G P
Sbjct: 161 ----KKMKKTAVRTIYE-INFTKKGNDLW-IDYRGNGFLQNMVRILTGTLIEVGDGRRAP 214
Query: 224 EIIQQLVD 231
E + Q+++
Sbjct: 215 EELPQILE 222
>gi|421173688|ref|ZP_15631426.1| tRNA pseudouridine synthase A, partial [Pseudomonas aeruginosa
CI27]
gi|404535440|gb|EKA45137.1| tRNA pseudouridine synthase A, partial [Pseudomonas aeruginosa
CI27]
Length = 274
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 103/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y+G Y G+Q Q + ++ L +AL K E C GRTD+ V A
Sbjct: 9 IALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVA----AEPVGVICAGRTDAAVHAS 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P + ++ N NLP DI V +P + ARF + R
Sbjct: 65 GQVVHFD--TAVERPLKA-------WVMGTNANLPADISVTWARVMPAHFHARFSAMARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI M +AAQ LVGTHDF + C+
Sbjct: 116 YRYAIYNDPIRPAHLAEEVTWNHRP-LDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ RL+ H + +IR FL H +R I VL +G G
Sbjct: 175 TMHHVRLLEHG----------------RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERP 218
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 219 IEWAKEVLE 227
>gi|395799337|ref|ZP_10478618.1| tRNA pseudouridine synthase A [Pseudomonas sp. Ag1]
gi|421140449|ref|ZP_15600459.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BBc6R8]
gi|395336441|gb|EJF68301.1| tRNA pseudouridine synthase A [Pseudomonas sp. Ag1]
gi|404508370|gb|EKA22330.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BBc6R8]
Length = 274
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVPTVQETLEKALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V+W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDVS-VSWAKVMPADFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD + M +AAQ+LVG HDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDAERMAEAAQHLVGIHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KEVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGER 217
Query: 222 KPEIIQQLVD 231
E +++++
Sbjct: 218 PVEWAREVLE 227
>gi|257464802|ref|ZP_05629173.1| tRNA pseudouridine synthase A [Actinobacillus minor 202]
gi|257450462|gb|EEV24505.1| tRNA pseudouridine synthase A [Actinobacillus minor 202]
Length = 262
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 114/270 (42%), Gaps = 56/270 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q S ++ + + L++ I C GRTDSGV
Sbjct: 3 IALGIEYDGSRYFGWQRQESVES-----VQQKLEEALSIVANSPVEVFCAGRTDSGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + +K + N +LP DI V VPE + ARF R
Sbjct: 58 GQVVHFETEAKRPLQA---------WCFGTNAHLPDDIAVKWAVEVPEDFHARFSATARR 108
Query: 124 YKYW----------FPQA------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y P+ LD + MH+A QYL+G +DF + FR
Sbjct: 109 YRYIIFNRKLRSAILPKGVSHYHVDLDHEKMHEAGQYLLGENDFSS------------FR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ + W+N+ H N+ +I++ F+ H +R I+ L VGQGN+
Sbjct: 157 AAKCQS--HTPWRNIH----HLNVSRLGAYIIVDIQANAFVHHMVRNIVGSLIEVGQGNQ 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL 251
PE I+ L +E+ R P + E L L
Sbjct: 211 PPEWIKWL--LEQKDRTLAAPTAKAEGLYL 238
>gi|257083304|ref|ZP_05577665.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
gi|256991334|gb|EEU78636.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
Length = 246
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF +
Sbjct: 108 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDFIGFSALK----- 161
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
T+ T + + + + + +F GFL +R ++ L +G G ++
Sbjct: 162 ------KTNKSTTRTIEKITI-ERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|291614576|ref|YP_003524733.1| tRNA pseudouridine synthase A [Sideroxydans lithotrophicus ES-1]
gi|291584688|gb|ADE12346.1| tRNA pseudouridine synthase A [Sideroxydans lithotrophicus ES-1]
Length = 254
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 114/273 (41%), Gaps = 50/273 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q N I L AL + E S GRTD+GV A
Sbjct: 3 IALGIEYDGSGYNGWQSQPDVPN-IQDTLQAALSRIA----GENISIIAAGRTDTGVHAL 57
Query: 64 CQVVTLK--IRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV I L S +++ N LP+D+ V+ PV +++ ARF
Sbjct: 58 EQVVHFDTGIVRPLAS-----------WVRGTNALLPKDVAVLWAHPVADEFHARFSAQA 106
Query: 122 RNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R+Y+Y WF LD++AM AAQ L+G HDF
Sbjct: 107 RSYQYVLINRPSRSAVHHGKVGWF-HLPLDVEAMRMAAQNLLGEHDFSAFRSSQC----- 160
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ T + VQ D I FN+ + FL H +R I+ L VG+G P+
Sbjct: 161 ---QAKTPVKTLAQLDIVQQGD----IIIFNLTANAFLHHMVRNIVGCLLYVGKGKYPPQ 213
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+ +L ++ RK P + L L H +D
Sbjct: 214 WMHEL--LQGRERKLAAPTFAPDGLYLCHITYD 244
>gi|256618219|ref|ZP_05475065.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|422719066|ref|ZP_16775716.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
gi|256597746|gb|EEU16922.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|315033638|gb|EFT45570.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
Length = 246
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 103/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L++ E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 108 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L + T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 155 IGFSALKKNKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|121605935|ref|YP_983264.1| tRNA pseudouridine synthase A [Polaromonas naphthalenivorans CJ2]
gi|166228746|sp|A1VRR5.1|TRUA_POLNA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|120594904|gb|ABM38343.1| tRNA pseudouridine synthase A [Polaromonas naphthalenivorans CJ2]
Length = 264
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 107/247 (43%), Gaps = 46/247 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q S T+ L AL + + + C GRTD+GV A
Sbjct: 3 IALGISYSGSAYEGWQSQLSG-KTVQDKLELALSRFAV----QPIRVMCAGRTDAGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +P + + +++ N LP DI V PVP+++ +R + R
Sbjct: 58 MQVV------HFDTPLQRETSS---WVRGTNAFLPSDIAVQWAQPVPDEFHSRASAIARR 108
Query: 124 YKYWF--------PQAG--------LDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y Y +AG LD DAM +AA +L+G HDF + C+
Sbjct: 109 YAYVVLESPVRPSVEAGRVGWVYRPLDGDAMRQAALHLMGEHDFSSFRAAQCQAKSPVKT 168
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
++ + AG S + +F + FL H IR IM L +GQGN P
Sbjct: 169 MSRIEISQRAGPGSRYWRFEFE------------ANAFLHHMIRNIMGCLLAIGQGNHPP 216
Query: 224 EIIQQLV 230
E + ++V
Sbjct: 217 EWLAEVV 223
>gi|395651719|ref|ZP_10439569.1| tRNA pseudouridine synthase A [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 274
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 105/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDVSV-SWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD + M +AAQYLVG HDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDAERMAEAAQYLVGVHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KEVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGER 217
Query: 222 KPEIIQQLVD 231
E +++++
Sbjct: 218 PVEWAKEVLE 227
>gi|407938191|ref|YP_006853832.1| tRNA pseudouridine synthase A [Acidovorax sp. KKS102]
gi|407895985|gb|AFU45194.1| tRNA pseudouridine synthase A [Acidovorax sp. KKS102]
Length = 273
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 106/249 (42%), Gaps = 36/249 (14%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +AL + Y G Y+G+Q Q S NT+ L AL + S C GRTD+GV
Sbjct: 1 MTRVALGVSYNGQTYNGWQSQLSG-NTVQDKLEAALGRFA----THPVSTLCAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV + L P +++ N LP DI V VPE++ AR +
Sbjct: 56 HGLMQVVHFD--TPLNRPAAS-------WVRGTNTFLPPDIAVQWAQAVPEQFHARASAV 106
Query: 121 FRNYKYWFPQ--------AG--------LDIDAMHKAAQYLVGTHDFRNL--CKMNVGNG 162
R Y Y Q AG LD AM +AA YL+G HDF +
Sbjct: 107 ARRYAYVLLQSPVRPSVDAGRVGWVFHPLDHGAMRQAADYLIGEHDFTSFRASACQAKTP 166
Query: 163 VVNFRRL-VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V R+ + G ++ + ++ + F + FL H IR IM L +GQG +
Sbjct: 167 VKTLHRIDIVRRGASAPHPELGWSPCY---WRFEFEANAFLHHMIRNIMGCLIAIGQGTQ 223
Query: 222 KPEIIQQLV 230
PE + +++
Sbjct: 224 PPEWMAEVL 232
>gi|408680127|ref|YP_006879954.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712]
gi|328884456|emb|CCA57695.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712]
Length = 285
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 39/235 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G ++ G+ Q T+ + AL+ + KE GRTDSGV A
Sbjct: 12 VRLDLSYDGKDFSGWAKQAQGQRTVQGDIEDALR--TVTRSKETYELTVAGRTDSGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P E ++ L+ L L D++V + + P ++ARF ++R
Sbjct: 70 GQVAHVDL------PAELWAEHRDKLLRRLAGRLSHDVRVWSLAEAPSGFNARFSAIWRR 123
Query: 124 YKY------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
Y Y W A LD+DAM++AA LVG HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRGHVLWHDWA-LDMDAMNEAAAALVGEHDFAAYCKRR--EGATT 180
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R L Q +++ + E +++ F + +R ++ L VG G+
Sbjct: 181 IRTL----------QELRWERRPDGVLEATVKADAFCHNMVRSLVGALLFVGDGH 225
>gi|406669026|ref|ZP_11076314.1| tRNA pseudouridine synthase A [Facklamia ignava CCUG 37419]
gi|405584709|gb|EKB58592.1| tRNA pseudouridine synthase A [Facklamia ignava CCUG 37419]
Length = 256
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 119/265 (44%), Gaps = 42/265 (15%)
Query: 5 ALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSA 62
ALKI Y G NY G+Q+Q DN +I L +AL++ + + + GRTD+GV A
Sbjct: 5 ALKIQYDGTNYVGYQVQ---DNGLSIQEVLERALRRIAKVSSTTRVANTVSGRTDAGVHA 61
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QVV + ++ S G + LN+ L I+VVA + V + AR+D + +
Sbjct: 62 LGQVVHVDFPYEIPSEGLR---------RGLNSILDDSIRVVAVACVSNTFHARYDAISK 112
Query: 123 NYKYW-----FPQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y+Y FP ++I + +A Q + GTHDF + C +
Sbjct: 113 TYRYIVDLNDFPNPFTRLYTLHHPYPIEIARIEEAIQAVKGTHDFTSFCSTKTQQE--DK 170
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
R VT A + V D++H I F GFL++ +R ++ L +G G +
Sbjct: 171 VRTVTEAAI------VYQEDANHLI--FTFSGNGFLYNMVRILVGTLLQIGDGIRPVSDM 222
Query: 227 QQLVDIEKYPRKPVYPMVRGEPLNL 251
++L+ + R P + E L L
Sbjct: 223 ERLLQVRD--RNLAGPTAKPEGLFL 245
>gi|407716341|ref|YP_006837621.1| tRNA pseudouridine synthase A [Cycloclasticus sp. P1]
gi|407256677|gb|AFT67118.1| tRNA pseudouridine synthase A [Cycloclasticus sp. P1]
Length = 269
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 98/245 (40%), Gaps = 43/245 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M A+ + Y G YHG+Q Q ++ T+ L AL + S C GRTD+GV
Sbjct: 1 MMKFAVGVEYDGSCYHGWQRQKNTPQTVQEKLESALS----VLASSPVSVVCAGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNEL-PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
A QVV E S EL ++ N NLP DI+VV PV E + ARF
Sbjct: 57 HALEQVVHF----------ETSKQRELHQWVFGTNANLPDDIRVVWIKPVTEDFHARFSA 106
Query: 120 LFRNYKY-----WFPQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
R Y+Y W A LD + M K A YL+GTHDF
Sbjct: 107 AARYYRYEILNRWVKSALSRHHVTTIFNPLDENLMQKGANYLLGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+FR A + + +I + FL H +R I+ L VG G P
Sbjct: 155 TSFRAQACQAKSPVKHIHSIVIKRIDDKIIIDIIANAFLHHMVRNIVGTLLPVGTGERPP 214
Query: 224 EIIQQ 228
E +
Sbjct: 215 EFVHH 219
>gi|52078642|ref|YP_077433.1| tRNA pseudouridine synthase A [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319649083|ref|ZP_08003291.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2]
gi|404487512|ref|YP_006711618.1| tRNA pseudouridine synthase A [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680541|ref|ZP_17655380.1| tRNA pseudouridine synthetase A [Bacillus licheniformis WX-02]
gi|62901269|sp|Q65P74.1|TRUA_BACLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|52001853|gb|AAU21795.1| pseudouridylate synthase I [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52346506|gb|AAU39140.1| tRNA pseudouridine synthase TruA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317388783|gb|EFV69602.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2]
gi|383441647|gb|EID49356.1| tRNA pseudouridine synthetase A [Bacillus licheniformis WX-02]
Length = 247
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 110/242 (45%), Gaps = 46/242 (19%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
I Y G ++G+Q+Q TI L KALQ L + KE+ GRTDSGV A Q
Sbjct: 7 ISYDGHLFYGYQVQPGQ-RTIQDELEKALQ--TLHKAKERIPVVSSGRTDSGVHAVGQ-- 61
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF---------- 117
T+ S L+ P + + PY LN LP DI V V +++ ARF
Sbjct: 62 TIHFDSPLSIP-----EAKWPY--ALNALLPDDISVRKAEAVNDQFHARFSAKRKEYRYM 114
Query: 118 -------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLC--KMNVGNGVVNFRR 168
D R Y Y P LD++ + +A++YLVGTHDF + C K V + V
Sbjct: 115 IYRGRHPDVFKRYYAYHVPY-DLDMEKVKEASRYLVGTHDFTSFCATKTEVKDKVRTVHE 173
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
L +++D+ + + I GFL++ +R I L VG G P I++
Sbjct: 174 L-------------EWSDTGDGL-QMRIVGSGFLYNMVRIIAGTLLDVGTGKFSPGDIEK 219
Query: 229 LV 230
++
Sbjct: 220 MI 221
>gi|296131870|ref|YP_003639117.1| tRNA pseudouridine synthase A [Thermincola potens JR]
gi|296030448|gb|ADG81216.1| tRNA pseudouridine synthase A [Thermincola potens JR]
Length = 246
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 113/274 (41%), Gaps = 46/274 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSG 59
MR I + I Y G +YHGFQ Q + TI L KAL+K E+ S GRTD+G
Sbjct: 1 MRNIKMTIEYDGTSYHGFQKQADQNLPTIQEALEKALRKLT----GEEISVTGAGRTDAG 56
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF-- 117
V A QV+ S + + +++ LN+ LP DI P + A+F
Sbjct: 57 VHALGQVINFYTESSIPTGN---------FVRALNSVLPEDIVAKDAVEAPGDFHAQFWA 107
Query: 118 ---------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 162
+R Y + P L++D M KAA +LVG HDF G+
Sbjct: 108 KKKTYRYTIFNDTVPSVFYRRYSLFVP-CKLNVDNMRKAASFLVGQHDFSAF--RAAGST 164
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ R + A V + + + + GFL++ +R I L +GQG +
Sbjct: 165 ARSSIRTMYRAEV----------EQEGELIHVYLEANGFLYNMVRIITGTLLYIGQGKLR 214
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
E ++ + I R P V + L L E+
Sbjct: 215 VEEMKDI--IASGDRTLAGPTVPPQGLCLMRVEY 246
>gi|417838978|ref|ZP_12485192.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M19107]
gi|341955793|gb|EGT82243.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M19107]
Length = 269
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 122/280 (43%), Gaps = 60/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q ++ L KAL +C+ EK C GRTDSGVS
Sbjct: 3 IALGIEYNGQNYYGWQRQEKV-RSVQEELEKAL--SCIA--NEKIEIFCAGRTDSGVSGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + S P E + N +LP DI V V +++ ARF R
Sbjct: 58 GQVVHFETNS--VRP-------EKAWAFGTNAHLPDDIAVSWAKQVDDEFHARFSATARR 108
Query: 124 YKYWF--------------PQAGLDIDA--MHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y F LD+DA MH+A Q L+G HDF +FR
Sbjct: 109 YRYIFYCNKLRSAILAGGMTHCHLDLDAEKMHQAGQCLLGEHDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ W+NV H N+ +I++ F+ H +R I+ L VG GN+
Sbjct: 157 --AAQCQSHTPWRNVH----HLNVSRIGKYIIVDIQANAFVHHMVRNIVGSLIEVGAGNK 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
E +Q L +E+ R+ P + + L L Y +FD
Sbjct: 211 PIEWMQWL--LEQKNRQLAAPTAKPDGLYLVDVIYPQKFD 248
>gi|210631184|ref|ZP_03296795.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279]
gi|210160151|gb|EEA91122.1| tRNA pseudouridine synthase A [Collinsella stercoris DSM 13279]
Length = 281
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 103/256 (40%), Gaps = 35/256 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ ++ Y G + GF Q T+A +AL+ + C GRTD+GV A
Sbjct: 24 LVFRLGYDGAGFSGFAEQPDV-RTVAGEARRALETFL----RRPIDMTCAGRTDAGVHAI 78
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q V++ EE +++ + LP DI + +SARFD R
Sbjct: 79 SQYVSVPAHR------EELAIEHRRWMRAMAALLPDDIALSGVYHAAPGFSARFDARSRT 132
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y W+ + LD++AM A +LVG HDF++ CKM+ G R
Sbjct: 133 YTYRIATGDARPLLTRNVTWWHRLPLDVEAMEAGAVHLVGEHDFKSFCKMSSAVGKPTCR 192
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE-II 226
+++ S + + H F I FL +R I+ L VG G P ++
Sbjct: 193 NVIS----VSFAREQALGEDH---LAFTITGNAFLHSMVRTIVGTLVEVGAGRRDPAWVV 245
Query: 227 QQLVDIEKYPRKPVYP 242
+ L ++ P P
Sbjct: 246 EVLAACDRRAAGPTAP 261
>gi|218132910|ref|ZP_03461714.1| hypothetical protein BACPEC_00771 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991783|gb|EEC57787.1| tRNA pseudouridine synthase A [[Bacteroides] pectinophilus ATCC
43243]
Length = 256
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I Y G Y+G+Q +DNTI L A+ K+ EK+ GRTD+GV A Q
Sbjct: 6 LTIQYDGSRYNGWQRLNDTDNTIEQILTDAIIKST----GEKTKLIGSGRTDAGVHALAQ 61
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
+ R +L +E+ + + LN+ LP DI+V VP + +R + Y
Sbjct: 62 TANFRCRQRL---------DEMHFTEELNSMLPEDIRVNLTKRVPPDFHSRHSATGKYYV 112
Query: 126 Y----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGVVNFR 167
Y W P D+ M +AAQ ++G HDF+ C + V
Sbjct: 113 YRIEISEPANPFRRRYSWKPDGIPDVKLMCEAAQRMIGEHDFKAFCTDAKLMPYTVKTVY 172
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
+ H + W N I E GFL++ +R + + G G P I
Sbjct: 173 DINIHKDYSCLW-----NREEPGIIELEFHGSGFLYNMVRIMAGTIVDAGLGRFSPADID 227
Query: 228 QLVD 231
+++
Sbjct: 228 AMLN 231
>gi|359432642|ref|ZP_09223008.1| tRNA pseudouridine38-40 synthase [Pseudoalteromonas sp. BSi20652]
gi|357920708|dbj|GAA59257.1| tRNA pseudouridine38-40 synthase [Pseudoalteromonas sp. BSi20652]
Length = 265
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y G+Q Q S N++ + KAL + C C GRTD+GV
Sbjct: 3 VALGVEYNGARYSGWQRQ-SHVNSVQQEVEKALSRIC----NHPVEVICAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ + E+D + + + +N +PRDI + PV + + ARF R
Sbjct: 58 GQVIHFET---------EADRDMVAFTLGMNTLMPRDIAIRFAQPVADDFHARFSATARR 108
Query: 124 YKYWF---PQAG-------------LDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y P G LD + M +A QYL+G HDF + C+ N
Sbjct: 109 YRYVIYNSPLRGAVLNEGVTHFHHHLDEEKMQEACQYLIGKHDFTSFRAIHCQANTPT-- 166
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R + H V V +I++ FL H +R I L VG ++P
Sbjct: 167 ----RTIHHLSVQRQGTYVI----------IDIKANAFLHHMVRNITGSLMDVGLHKQQP 212
Query: 224 EIIQQLVDIEK 234
I++L+D ++
Sbjct: 213 IWIKELLDCKE 223
>gi|297564067|ref|YP_003683040.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848516|gb|ADH70534.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 279
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 97/235 (41%), Gaps = 41/235 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G ++ G+ Q T+ L AL + + + S C GRTD+GV A
Sbjct: 8 VRLDVAYDGTDFSGWAAQPGR-RTVQGELEAALARVLRLPE---VSLTCAGRTDAGVHAR 63
Query: 64 CQVVTLKIRSKL-TSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV I ++ S GE L+ L LP+D++V A P + ARF LFR
Sbjct: 64 GQVAQADIPARTWESEGER-------VLRRLAGVLPKDVRVRAARLAPPGFDARFSPLFR 116
Query: 123 NYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
Y Y A LD+D M+ AA+ LVG HDF CK G
Sbjct: 117 RYLYRVSDAPYGVDPLLRRDVLWHRSPLDVDRMNAAAERLVGEHDFAAFCKRR--EGATT 174
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R L+ +++ ++ I++ F + +R ++ L VG G
Sbjct: 175 IRELL----------RLEWTRVDEHLLHGTIQADAFCHNMVRALVGALLAVGDGR 219
>gi|289671992|ref|ZP_06492882.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
FF5]
gi|422664779|ref|ZP_16724652.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|440719718|ref|ZP_20900142.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP34876]
gi|440728780|ref|ZP_20908982.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP34881]
gi|330975198|gb|EGH75264.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|440360563|gb|ELP97826.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP34881]
gi|440367364|gb|ELQ04429.1| tRNA pseudouridine synthase A [Pseudomonas syringae BRIP34876]
Length = 274
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 65 GQVVHFDTQAERTLKA---------WVMGANINLPHDVSVTWARVMPATFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 116 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G
Sbjct: 175 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERP 218
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 219 VEWAREVLE 227
>gi|334139094|ref|ZP_08512491.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF7]
gi|333603059|gb|EGL14482.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF7]
Length = 256
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 113/274 (41%), Gaps = 38/274 (13%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + + Y G +Y GFQ Q NT+ +L +A++ + E GRTD+GV
Sbjct: 1 MRNIRITVSYDGTSYSGFQTQPHG-NTVQDYLERAIR----MLSGETVKITSSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A QV+ S++ P E + LN+ LP+DI + VP + AR
Sbjct: 56 HARAQVINFTTASQI--PAER-------WCLALNSRLPKDIVALRADEVPLSFHARKSAK 106
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
D R Y++ P LD+DAM A ++GTHDF + C + V
Sbjct: 107 RKTYSYTIRTARIPDTFQRRYQFHHPNP-LDVDAMRDALAAILGTHDFSSFCSVKT---V 162
Query: 164 VNFR-RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
R R + A + + + F GFL++ +R ++ L +G+G
Sbjct: 163 AESRIRTIYDAWIVEETDQMSVEPNQPGQLRFYFTGSGFLYNMVRILVGTLIQIGEGKRP 222
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
E + + + R P L L++ E+
Sbjct: 223 AEEMAAI--LRGRNRALAGPTAEAHGLMLWNVEY 254
>gi|152973988|ref|YP_001373505.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
gi|152022740|gb|ABS20510.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
Length = 247
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 110/275 (40%), Gaps = 45/275 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M I + Y G N+ G+QIQ T+ + KALQK + E GRTDS V
Sbjct: 1 MERIKCTVAYDGINFCGYQIQPQH-RTVQQEIEKALQK---LHKGELVRVQASGRTDSTV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A QV+ L E + LN LP DI +V E++ AR+
Sbjct: 57 HAKGQVIHFDTPLSL---------EEWQWGNALNTLLPDDIVIVQVEKKTEEFHARYGVV 107
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
D RNY Y +P +DI + KA Y +GTHDF + C
Sbjct: 108 KKEYRYRVLLSKTADVFRRNYVYQYPYP-IDIQLIRKAIPYFIGTHDFTSFCSAKTDK-- 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
V + ++ F + F GFL++ +R I+ L VGQG P
Sbjct: 165 --------KDKVRTIYEIDLFEQGDELV--FRFVGNGFLYNMVRIIVGTLLSVGQGKVDP 214
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
+ I ++ + K R+ MV G L L+ ++N
Sbjct: 215 DSIPEI--LAKQDRRFAGKMVPGHGLYLWQVNYNN 247
>gi|125975420|ref|YP_001039330.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405]
gi|256005284|ref|ZP_05430250.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360]
gi|281419381|ref|ZP_06250396.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20]
gi|385777865|ref|YP_005687030.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313]
gi|419723270|ref|ZP_14250403.1| tRNA pseudouridine synthase A [Clostridium thermocellum AD2]
gi|419727085|ref|ZP_14254091.1| tRNA pseudouridine synthase A [Clostridium thermocellum YS]
gi|166991160|sp|A3DJK8.1|TRUA_CLOTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125715645|gb|ABN54137.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405]
gi|255990720|gb|EEU00836.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360]
gi|281407001|gb|EFB37264.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20]
gi|316939545|gb|ADU73579.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313]
gi|380769490|gb|EIC03404.1| tRNA pseudouridine synthase A [Clostridium thermocellum YS]
gi|380780735|gb|EIC10400.1| tRNA pseudouridine synthase A [Clostridium thermocellum AD2]
Length = 244
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 107/253 (42%), Gaps = 42/253 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + L I Y G NYHG+Q Q ++ T+ + +A++ EK RTD GV
Sbjct: 1 MRNVKLIIEYDGTNYHGWQKQKNA-KTVQDTIERAIKGLT----GEKVDLIGASRTDFGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV S + PG+ + LN LP DI + V + AR+
Sbjct: 56 HALGQVANFITNSGI--PGDR-------FSYALNRMLPDDIVIKESQEVDMDFHARYKAK 106
Query: 121 FRNYKYW-----FPQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y FP A LD ++M +AA Y +GTHDF + G+
Sbjct: 107 GKRYRYLIYNSQFPSALLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAF--RSSGSSAK 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R +T + + I +F I GFL++ +R I+ L VG G + +
Sbjct: 165 TSVRTITDVSL----------EREDKIVKFEIAGDGFLYNMVRIIVGTLMEVGIGKIRAD 214
Query: 225 IIQQLVDIEKYPR 237
I Q+++ K R
Sbjct: 215 EIPQIIESRKRKR 227
>gi|289579109|ref|YP_003477736.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9]
gi|289528822|gb|ADD03174.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9]
Length = 240
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 46/230 (20%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G NYHG+Q+Q ++ T+ L KA++K E+ + RTD+GV A QV
Sbjct: 4 VQYDGTNYHGWQLQKNAI-TVQEVLQKAIKKVT----GEEVNLIGASRTDTGVHALYQVA 58
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
K +K+ P E+ LPY LN+ LP DI + V + + AR+ + YKY
Sbjct: 59 NFKTNTKM--PAEK-----LPY--ALNSVLPDDIVITQAKDVEDSFHARYSAKRKRYKYI 109
Query: 127 ---------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
W L+++ M KAA YL+GTHDF +
Sbjct: 110 ILNRKFRMPTMRNYCWHISYPLNVEKMKKAATYLIGTHDFSAFK--------------AS 155
Query: 172 HAGVTSAWQNVQ--FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ TS + V + + + I + GFL++ +R I+ L VG G
Sbjct: 156 GSSKTSTIRTVYDLIIEKNEDFINIEIEADGFLYNMVRIIVGTLSYVGLG 205
>gi|402828551|ref|ZP_10877438.1| tRNA pseudouridine(38-40) synthase [Slackia sp. CM382]
gi|402286359|gb|EJU34834.1| tRNA pseudouridine(38-40) synthase [Slackia sp. CM382]
Length = 319
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 102/256 (39%), Gaps = 47/256 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
R +AL + Y G + GF Q S T+ L +AL + + C GRTD+GV
Sbjct: 60 RCVALGVAYDGAPFAGFARQAESHVTTVQGELERALS----VLYRRAVDTVCAGRTDAGV 115
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYL-KMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
A QVV+ + EE L L K +N + I V P +SARFD
Sbjct: 116 HALGQVVSFDLTE------EEFASRPLRTLMKSMNALVDERITVTCAEERPAGFSARFDA 169
Query: 120 LFRNYKYWFPQ-----------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNV--- 159
R Y+Y+ A LD+DAM+ AA+ LVG HDF++ C +
Sbjct: 170 TSREYRYFIATGNARPVLIARSVWHLRGAPLDVDAMNAAARLLVGEHDFKSFCVASSALH 229
Query: 160 --GNGVVNFRRLVTHAGVTSAWQNVQFNDSH---HNICEFNIRSQGFLWHQIRCIMSVLF 214
G G RR++ +H + E I FL IR I+ L
Sbjct: 230 LEGEGRSTCRRVI----------EADVRSTHVMGTPVVEVRIVGNAFLHSMIRIIVGTLV 279
Query: 215 LVGQGNEKPEIIQQLV 230
VGQG + ++
Sbjct: 280 AVGQGRRDASWVADVL 295
>gi|336435341|ref|ZP_08615056.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_4_56FAA]
gi|336000794|gb|EGN30940.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_4_56FAA]
Length = 257
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 107/251 (42%), Gaps = 46/251 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNT--IAHHLLKALQKTCLIEDKEKSSFACCGRTDS 58
MR I L + Y G NY G+Q+Q + + + L AL T K + RTDS
Sbjct: 1 MRRIKLTVAYDGTNYCGWQVQPNGITVEEVLNRALSALTGT-------KVNVIGASRTDS 53
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
GV A V S + + + Y +N LP DI VV VP+ + R+
Sbjct: 54 GVHARGNVAIFDTDSPIPP-------DRISY--AVNQKLPDDIVVVKSEEVPKDWHPRYQ 104
Query: 119 CLFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 162
+ Y+Y +F LD++ M KAA YLVG HDF + C N+
Sbjct: 105 NSVKTYEYHILNARMPDPTRRYTTYFVSYHLDLEQMRKAAGYLVGEHDFASFC--NIHTD 162
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V + R + V + +++ +R GFL++ +R I L VG+G
Sbjct: 163 VEDTVRTIYELTVEKSGEDLT----------IRVRGNGFLYNMVRIIAGTLLQVGRGFYT 212
Query: 223 PEIIQQLVDIE 233
PE ++ +++ +
Sbjct: 213 PEDVRGILETK 223
>gi|229846251|ref|ZP_04466363.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1]
gi|229811255|gb|EEP46972.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1]
Length = 269
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 121/280 (43%), Gaps = 60/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q ++ L KAL +C+ EK C GRTDSGVS
Sbjct: 3 IALGIEYNGQNYYGWQRQEKV-RSVQEELEKAL--SCIA--NEKIEIFCAGRTDSGVSGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P E + N NLP DI V V +++ ARF R
Sbjct: 58 GQVVHFETNA--VRP-------EKAWAFGTNANLPDDIAVAWAKQVDDEFHARFSATARR 108
Query: 124 YKY--------------WFPQAGLDIDA--MHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD+DA MH+A Q L+G HDF +FR
Sbjct: 109 YRYILYCNKLRSAILAGGMTHCHLDLDAEKMHQAGQCLLGEHDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ W+NV H N+ +I++ F+ H +R I+ L VG GN+
Sbjct: 157 --AAQCQSHTPWRNVH----HLNVSRIGQYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQ 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
E +Q L +E+ R+ P + + L L Y +FD
Sbjct: 211 PIEWMQWL--LEQKNRQLAAPTAKPDGLYLVDVIYPQKFD 248
>gi|347821576|ref|ZP_08875010.1| tRNA pseudouridine synthase A [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 267
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 104/249 (41%), Gaps = 47/249 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y G+Q Q S NT+ L AL + + C GRTD+GV A
Sbjct: 3 MALGLSYNGQGYSGWQSQPSG-NTVQDRLEAALHRFA----TQPVGTLCAGRTDAGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + L P + +++ N LP DI V PV + + AR + R
Sbjct: 58 MQVVHFD--TPLERPA-------VSWVRGTNRFLPPDIAVQWAQPVADGFHARASAVARR 108
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVV 164
Y Y W QA LD AM +AA+ L+G HDF + + V
Sbjct: 109 YAYVLLQSPVRPSVDAARVGWVFQA-LDHAAMRQAAEQLLGEHDFSSFRAAACQAPSPVK 167
Query: 165 NFRRL-VTHAGVTSAWQNVQFNDSHHNIC--EFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
RR+ + G A H C F + FL H +R IM L VGQG +
Sbjct: 168 TLRRIDIVRRGPGDA----------HGPCYWRFEFEADAFLHHMVRNIMGCLIAVGQGRQ 217
Query: 222 KPEIIQQLV 230
P +QQ++
Sbjct: 218 PPAWMQQVL 226
>gi|423104107|ref|ZP_17091809.1| tRNA pseudouridine synthase A [Klebsiella oxytoca 10-5242]
gi|376385749|gb|EHS98470.1| tRNA pseudouridine synthase A [Klebsiella oxytoca 10-5242]
Length = 270
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 120/286 (41%), Gaps = 65/286 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q ++ L KAL + E + C GRTD+GV
Sbjct: 12 IALGIEYDGSNYYGWQRQNEV-RSVQEKLEKALSQVA----NEPVNVFCAGRTDAGVHGT 66
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + R++ + + +N NLP DI V PVP + ARF R
Sbjct: 67 GQVVHFETRAQ---------RQDAAWTLGVNANLPGDIAVRWVKPVPPDFHARFSATARR 117
Query: 124 YK-------------------YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
Y+ Y+ P LD + M +AAQ L+G +DF
Sbjct: 118 YRYVIYNHRLRPAVLSRGVTHYYLP---LDAERMQRAAQCLLGENDF------------T 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQ 218
+FR + + + W+NV H N+ + +I++ F+ H +R I+ L VG
Sbjct: 163 SFRAVQCQS--RTPWRNVM----HINVTRYGAYVVVDIKANAFVHHMVRNIVGSLMEVGA 216
Query: 219 GNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD 264
GN+ I +L+ + R + E L L ++ HYD
Sbjct: 217 GNQPESWIAELLAAKD--RTLAAATAKAEGLYLVSVDYPA---HYD 257
>gi|300857811|ref|YP_003782794.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
FRC41]
gi|375287978|ref|YP_005122519.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
3/99-5]
gi|384506086|ref|YP_005682755.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
C231]
gi|384508176|ref|YP_005684844.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
I19]
gi|386739747|ref|YP_006212927.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
31]
gi|387135943|ref|YP_005691923.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
42/02-A]
gi|387138003|ref|YP_005693982.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|392399951|ref|YP_006436551.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
Cp162]
gi|300685265|gb|ADK28187.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
FRC41]
gi|302205546|gb|ADL09888.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
C231]
gi|308275782|gb|ADO25681.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
I19]
gi|348606388|gb|AEP69661.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
42/02-A]
gi|349734481|gb|AEQ05959.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|371575267|gb|AEX38870.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
3/99-5]
gi|384476441|gb|AFH90237.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
31]
gi|390531029|gb|AFM06758.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
Cp162]
Length = 291
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 34/259 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G ++HG+ Q +S +L+ + L + GRTD+GV A
Sbjct: 10 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELIL---RHPIQLTVAGRTDAGVHAA 66
Query: 64 CQVVTLKIRS-KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV + + L + + D L ++ L LP D++V A + PE + ARF L R
Sbjct: 67 GQVAHFDVPAIALDTRSIDGDPRNL--VRRLARLLPEDVRVHACTLAPEGFDARFSALRR 124
Query: 123 NYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+Y Y P+ L DIDAM AA L+G HDF CK G +
Sbjct: 125 HYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCKHREGATTIR 184
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE- 224
+ T W +V + E ++ + F W +R ++ ++G+G ++PE
Sbjct: 185 DLQEFT-------WHDVS-TSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEG-KRPEG 235
Query: 225 -IIQQLVDIEKYPRKPVYP 242
+ L + + + PV P
Sbjct: 236 FVDSLLTETSRSSQVPVAP 254
>gi|257487527|ref|ZP_05641568.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|422683312|ref|ZP_16741573.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|331012647|gb|EGH92703.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 284
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 100/240 (41%), Gaps = 50/240 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T+ ++ N NLP D+ V +P + ARF + R
Sbjct: 75 GQVVHFDTQAERTTKA---------WVMGANINLPHDVSVTWARVMPATFHARFKAIARR 125
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + LD++ M AA+YLVGTHDF C+
Sbjct: 126 YRYVIYNDQIRPAHLNQEITWNHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQ 185
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
++ R+ H + ++R+ FL H +R I VL +G G E+P
Sbjct: 186 LHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTG-ERP 228
>gi|425057402|ref|ZP_18460821.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|403040550|gb|EJY51621.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
Length = 246
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 100/248 (40%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + +PE++ +R++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAV 107
Query: 121 F-----------------RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
RNY ++FPQ LD+D ++ A + LVGTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNYSFYFPQE-LDMDKLNAACEKLVGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|220903970|ref|YP_002479282.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868269|gb|ACL48604.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 259
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 100/245 (40%), Gaps = 34/245 (13%)
Query: 4 IALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
+ L I Y G Y G+QIQ T+ L AL+ + S GRTDSGV
Sbjct: 3 LKLLISYVGTGYSGWQIQEKPKPPPTVQGALEAALRTIAGKAVRVHGS----GRTDSGVH 58
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QV I L + LN LPRDI+V+ SP + AR D L
Sbjct: 59 AHGQVAHCDIPDTRAG---------LDWRHSLNAVLPRDIRVLDASPAAPDFHARKDALR 109
Query: 122 RNYKYWFPQ----------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y Y F Q LD+DAM A +L+G HDF L N G V +
Sbjct: 110 KTYAYQFWQDRRFLPPHVRPYVWNCGMLDLDAMRDALPFLLGRHDFAGL--RNAGTDVES 167
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R + A + A ++ H + I + GFL +R + +L GQG +P
Sbjct: 168 TERTIMDARL-DALAPCEYYPPHAPMLRLTITADGFLKQMVRNVAGLLAACGQGKIQPAQ 226
Query: 226 IQQLV 230
I L+
Sbjct: 227 IPALL 231
>gi|308070945|ref|YP_003872550.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa E681]
gi|305860224|gb|ADM72012.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I)
[Paenibacillus polymyxa E681]
Length = 261
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 113/273 (41%), Gaps = 34/273 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + +K+ Y G +Y GFQ Q + NTI L A+ E+ GRTD+GV
Sbjct: 1 MRNLCMKVNYDGTHYDGFQTQPNG-NTIQDCLEHAIYSLT----GERLKITGSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV S + P + + LN LPRDI V VP + AR
Sbjct: 56 HAYGQVFNFHTESPI--PLQR-------WCLALNAWLPRDIIVTDAREVPLSFHARRMAK 106
Query: 121 FRNYKY-----WFPQ-----------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y FP LD+ AM + +LVGT D+ + +
Sbjct: 107 RKTYRYSINANRFPDIFHRRTQVHHPTSLDVRAMEEGLAHLVGTFDYTSFASRR--SQKT 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
N R + A +T + + I I GFL H +R IM L VG+G + +
Sbjct: 165 NHVRTIYEAYMTVDHSFSRPDSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSSD 224
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I +++ + R P G L L++ E+D
Sbjct: 225 DIPSILEAKN--RSKAGPTAVGHALTLWNVEYD 255
>gi|342903852|ref|ZP_08725655.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21621]
gi|341954300|gb|EGT80788.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21621]
Length = 269
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 119/280 (42%), Gaps = 60/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q ++ L KAL EK C GRTDSGVS
Sbjct: 3 IALGIEYNGQNYYGWQRQEKV-RSVQEELEKALSYIA----NEKIEIFCAGRTDSGVSGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P E + N +LP DI V V +++ ARF R
Sbjct: 58 GQVVHFETNA--VRP-------EKAWAFGTNAHLPDDIAVTWAKQVDDEFHARFSATARR 108
Query: 124 YKYWF--------PQAG--------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y AG LD + MH+A QYL+G HDF +FR
Sbjct: 109 YRYILYCNKLRSAILAGGMTHCHLDLDTEKMHQAGQYLLGEHDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ W+NV H N+ +I++ F+ H +R I+ L VG GN+
Sbjct: 157 --AAQCQSHTPWRNVH----HLNVSRIGKYIIVDIQANAFVHHMVRNIVGSLMEVGAGNQ 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
E +Q L +E+ R+ P + + L L Y +FD
Sbjct: 211 PIEWMQWL--LEQKNRQLAAPTAKPDGLYLVDVIYPQKFD 248
>gi|444379955|ref|ZP_21179123.1| tRNA pseudouridine synthase A [Enterovibrio sp. AK16]
gi|443675915|gb|ELT82628.1| tRNA pseudouridine synthase A [Enterovibrio sp. AK16]
Length = 264
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 105/248 (42%), Gaps = 46/248 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G ++G+Q Q ++ HL KAL K + C GRTD+GV
Sbjct: 3 IALGVEYDGAKFYGWQRQREVP-SVQEHLEKALSKIA----NQPIEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + E + +N +LP I V VP+++ ARF R
Sbjct: 58 GQVVHFDV---------EGSRPLRAWTMGVNTHLPDAIAVRWAKEVPDEFHARFTATARR 108
Query: 124 YKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+AAQYL+G +DF +FR
Sbjct: 109 YRYVIYNHALRPGILRHGVSHYHGELDEKLMHEAAQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICE--FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+NV + C +I++ F+ H +R I L VG+ +KPE
Sbjct: 157 --AAHCQSNSPWRNVHHINVTRQGCYVIIDIKANAFVHHMVRNITGSLIAVGRKEQKPEW 214
Query: 226 IQQLVDIE 233
++ L++I+
Sbjct: 215 LKWLLEIK 222
>gi|403388244|ref|ZP_10930301.1| tRNA pseudouridine synthase A [Clostridium sp. JC122]
Length = 244
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 107/253 (42%), Gaps = 54/253 (21%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED------KEKSSFACCG 54
MR I L + Y G NY G+Q Q + LQ T IED KE C
Sbjct: 1 MRNIKLTLEYDGTNYFGWQKQKTK---------VTLQGT--IEDIISNLTKEDIEIIGCS 49
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTDSGV + + S + P E+ D LN LP DI V+ VPE++
Sbjct: 50 RTDSGVHSKGYICNFVTNSSI--PSEKFKD-------ALNVKLPDDIAVLKSEEVPEEFH 100
Query: 115 ARFDCLFRNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMN 158
+R+ C + Y Y + LDI+ M++A +Y +GTHDF N
Sbjct: 101 SRYSCRGKKYSYTILERPMKATIDRNYVCQCKYNLDIEKMNEACKYFIGTHDFSAF--KN 158
Query: 159 VGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
G+ V R ++ V + N + + + GFL++ +R I+ L VG
Sbjct: 159 KGSSVKTSVRTISELYV----------EKTGNYVKIFVSADGFLYNMVRIIVGTLIDVGI 208
Query: 219 GNEKPEIIQQLVD 231
G P+ I+ ++D
Sbjct: 209 GKINPKSIKNIID 221
>gi|374709914|ref|ZP_09714348.1| tRNA pseudouridine synthase A [Sporolactobacillus inulinus CASD]
Length = 246
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 40/246 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M I + Y G +HG+Q+Q T+ + AL + + GRTD+GV
Sbjct: 1 MTKIKCTVAYDGSQFHGYQVQ-PQKRTVQREIQNALAR---MHHGSTIKIVASGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV S L P E + + LN+ LP DI V VPE + AR+D
Sbjct: 57 HAYGQV--FHFESPLKIPLER-------WPRALNSLLPGDIYVRHAEAVPETFHARYDVK 107
Query: 121 FRNYKY---------WFPQA-------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y F +A LD++AM++AA+ ++GTHDF C N V
Sbjct: 108 QKEYRYRLLTRPEPDLFRRAYTAHVAQPLDLEAMNQAAEAIIGTHDFSCFCAAN--TDVK 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R V H V+ + + GFL+ +R I L VG+ PE
Sbjct: 166 DKVRTVFHLSVSREKDDETV---------IRVVGSGFLYQMVRIITGTLLDVGKHQMAPE 216
Query: 225 IIQQLV 230
I +++
Sbjct: 217 RIAEII 222
>gi|269862152|ref|XP_002650725.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|220065712|gb|EED43331.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 319
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 105/248 (42%), Gaps = 45/248 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
+R IALKI Y G YHG Q + + +I L AL+ T L E + CGRTD GV
Sbjct: 64 IRKIALKIAYDGRVYHGVQ-KDPNGLSIGEVLENALRSTDLY--IESNDIVFCGRTDRGV 120
Query: 61 SAFCQVVTLKIRSKLTSPG------------------------------------EESDD 84
SA +++LKI+S L + ++ D
Sbjct: 121 SAANMIISLKIKSILETYSANPNYHRHIETETYDTYQFNKKEYKRYLLNNSDFEIKKHDA 180
Query: 85 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 144
ELPY +LN LP I+V W+PVP +SAR +C R Y Y+F + +A +
Sbjct: 181 KELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTCPPQLLPKYQEAGRI 240
Query: 145 LVGTHDFRNLCKMNVGNGVVNFR-RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLW 203
+ T DF N C + + F+ ++ +T +Q +C NI + F
Sbjct: 241 IYKTEDFYNFCTHSKVDANYKFKLSMLEFVSITPYPSQIQ-----KFLCAMNISAYSFPP 295
Query: 204 HQIRCIMS 211
+ R I S
Sbjct: 296 NMGRKIFS 303
>gi|89100313|ref|ZP_01173178.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911]
gi|89084934|gb|EAR64070.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911]
Length = 245
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 108/250 (43%), Gaps = 49/250 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ KI Y G + G+Q+Q T+ + +AL K I GRTD+GV
Sbjct: 1 MQRFKCKIAYDGSQFSGYQVQPGK-RTVQLEVERALAK---IHKGNPVKIFASGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV+ S L P E ++ LN+ LP+DI V + E + ARFD
Sbjct: 57 HARGQVIHFD--SPLAIP-------EDRWVTALNSLLPKDIAVESTEKAAEGFHARFDAC 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLC--KMNVGN 161
+ Y+Y+ +P LDI AM +AA++L+GTHDF + C + +V +
Sbjct: 108 GKEYRYFIYRGKIRSPFERHYSYHYPHP-LDIRAMREAAEHLLGTHDFSSFCASRTDVED 166
Query: 162 GVVNFRRL-VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
V R++ V AG + E + GFL++ +R + L G G
Sbjct: 167 KVREIRKVHVEEAG---------------EMLELHFTGSGFLYNMVRILTGTLLEAGAGT 211
Query: 221 EKPEIIQQLV 230
P +++
Sbjct: 212 RDPGSFPEVI 221
>gi|401565544|ref|ZP_10806376.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. FOBRC6]
gi|400187025|gb|EJO21228.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. FOBRC6]
Length = 258
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 96/234 (41%), Gaps = 40/234 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALK+ Y G NY GFQ QT + + L +AL K C E+ A GRTD+GV
Sbjct: 6 RNIALKVAYDGTNYRGFQRQTPPVVAVQNVLERALAKVC----AEEVELAAAGRTDAGVH 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A+ QVV ++ LP + +N LP DI V +SAR
Sbjct: 62 AYGQVVNFFTDGRIPV-------KRLP--RAVNGLLPPDIVVTEAWEAARVFSARHSATG 112
Query: 122 RNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y Y Q LD++AM A LVGTHD+ + + G +
Sbjct: 113 KAYVYRLEQCTVPDPFTRNYAWQIFQPLDVEAMRAALAMLVGTHDYSSF-RAAGGAPMSP 171
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
R L ++ + + GFL+H +R IMS + VG G
Sbjct: 172 VRTL----------DEIRLREEGAGRLSCYLHGNGFLYHMVRNIMSTVVSVGLG 215
>gi|229591618|ref|YP_002873737.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens SBW25]
gi|229363484|emb|CAY50706.1| pseudouridylate synthase I [Pseudomonas fluorescens SBW25]
Length = 284
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 103/242 (42%), Gaps = 54/242 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L KAL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVA----DSPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V+W+ V P + ARF + R
Sbjct: 75 GQVVHFDT---------QAERSMKAWVMGANINLPHDVS-VSWAKVMPAHFHARFKAIAR 124
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD + M +AAQ+LVG HDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNEEITWNHRP-LDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPI 183
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ R+ H + +IR+ FL H +R I VL +G G E
Sbjct: 184 KEVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTG-E 226
Query: 222 KP 223
+P
Sbjct: 227 RP 228
>gi|90579292|ref|ZP_01235102.1| tRNA pseudouridine synthase A [Photobacterium angustum S14]
gi|90440125|gb|EAS65306.1| tRNA pseudouridine synthase A [Photobacterium angustum S14]
Length = 261
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 101/245 (41%), Gaps = 46/245 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G Y+G+Q Q D ++ L KAL K + C GRTD+GV
Sbjct: 3 IALGVEYDGAKYYGWQRQRDVD-SVQERLEKALSKVA----NQPVEVFCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV I D + + N +LP+DI V + V E + ARF R
Sbjct: 58 GQVVHFDI---------NIDRKMVAWTMGANAHLPKDIAVRWATEVSEDFHARFTATARR 108
Query: 124 YKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIFNNALRPAILGNGVSHYHGHLDEKKMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQF--NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
H S W+N+ + +I++ F+ H +R I L VG+G E PE
Sbjct: 157 --AVHCQSRSPWRNLMHLKVTRQGDFVIIDIKANAFVHHMVRNITGSLIKVGKGEENPEW 214
Query: 226 IQQLV 230
I+ L+
Sbjct: 215 IEWLL 219
>gi|241765867|ref|ZP_04763802.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN]
gi|241364216|gb|EER59401.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN]
Length = 289
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y+G+Q Q S NT+ HL AL + ++ S C GRTD+GV
Sbjct: 20 VALGVSYNGQRYNGWQSQPSG-NTVQDHLEAALGRFT----TQQVSTLCAGRTDAGVHGL 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + L P + +++ N LP+DI V VP + AR + R
Sbjct: 75 MQVVHFD--TTLVRP-------DASWVRGTNAFLPQDIAVQWARAVPSGFHARASAVARR 125
Query: 124 YKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVVN 165
Y Y Q+ L+ DAM +AA L+G HDF + + V
Sbjct: 126 YAYVLLQSPVRPSVEAGRVGWVFNALNEDAMRQAALRLLGEHDFTSFRASACQAKSPVKT 185
Query: 166 FRRL-VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+R+ +T A +F+ + F + FL H IR IM L VG+G + P
Sbjct: 186 LQRIDITRTPCPRASAAGEFDACY---WRFEFEANAFLHHMIRNIMGSLVAVGKGTKPPS 242
Query: 225 IIQQLVD 231
I +++D
Sbjct: 243 WISEVLD 249
>gi|445114845|ref|ZP_21378052.1| tRNA pseudouridine(38-40) synthase [Prevotella nigrescens F0103]
gi|444840563|gb|ELX67592.1| tRNA pseudouridine(38-40) synthase [Prevotella nigrescens F0103]
Length = 260
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 107/252 (42%), Gaps = 41/252 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ +K Y G NYHG+QIQ + T+ L KAL + K+ GRTDSGV
Sbjct: 1 MQRYFIKFSYDGTNYHGWQIQPNGI-TVQEVLEKALSTLL----RSKTGVVGAGRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A + + E D +L Y LN LPRD+ V A PV + ARF
Sbjct: 56 HA------RTMFAHFDCLEEAIDCKQLCY--KLNRLLPRDVAVTAVFPVGNELHARFSAT 107
Query: 121 FRNYKYWFPQAG--------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
R Y Y+ LD D M++AA YLVG HDF+ CK N
Sbjct: 108 SRTYHYYMHHGRNPFLKAYSCEMPYVLDYDRMNEAASYLVGEHDFKCFCKAGGDNK---- 163
Query: 167 RRLVTHAGVTSA-WQNVQFNDSHHNICE------FNIRSQGFLWHQIRCIMSVLFLVGQG 219
T +T A W+ S + E F I + FL + +R ++ L VG+
Sbjct: 164 ---TTICNLTEARWERCNTQLSIRDNVEEAGQWCFVITANRFLRNMVRAVVGTLVEVGRC 220
Query: 220 NEKPEIIQQLVD 231
P+ Q++VD
Sbjct: 221 RISPDEFQKIVD 232
>gi|403387615|ref|ZP_10929672.1| tRNA pseudouridine synthase A [Clostridium sp. JC122]
Length = 245
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 115/272 (42%), Gaps = 43/272 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + I Y G Y G+Q ++NTI + L K C CGRTD+GV
Sbjct: 1 MKNFKITIEYDGSRYKGWQRLQDNENTIQGKIENVLTKLC----GHNVQVVGCGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A L S++ YL LP DI V V E++ +R++
Sbjct: 57 HAENYTANFYTDCML------SEEMMSDYLYEF---LPEDIVVKDIKEVGERFHSRYNAK 107
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y + LD+DAM KA++ L+GTHDF++
Sbjct: 108 SKTYVYKINNGKFRNVFDRKYIYHIDEKLDLDAMKKASEVLIGTHDFQS----------- 156
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
F L + T N ++ E + GFLWH +R I+ L VG+GN K
Sbjct: 157 -FTTLKSKKKSTVKTINYINIKKDNDYIEIEMNGDGFLWHMVRIIVGTLLEVGKGNLKHN 215
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
++++++++K R+ P+ + + L L + E+
Sbjct: 216 DVEKILNMKK--RQDAGPIAQSKGLFLRNVEY 245
>gi|283796516|ref|ZP_06345669.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|291075930|gb|EFE13294.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|295092580|emb|CBK78687.1| pseudouridylate synthase I [Clostridium cf. saccharolyticum K10]
Length = 368
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 132/320 (41%), Gaps = 62/320 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ I L + Y G NY G+Q+Q + TI L +AL + KE+ RTDSGV
Sbjct: 1 MKRIRLTVAYDGTNYCGWQLQPNG-ITIEEVLNRALSELL----KEEIQVVGASRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A + S++ P E+ LN LP D++V VP + R
Sbjct: 56 HAMGNIAVFDTESRI--PPEK-------ICFALNQRLPEDVRVQKSEEVPLTFHPRKANC 106
Query: 121 FRNYKYW----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y F LD++ M +AA +LVG HDF++ C +
Sbjct: 107 VKTYEYKILNRKIDMPLNRLYCHFCYFDLDVEKMRRAAAFLVGEHDFKSFCTV------- 159
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R V + + ++ + ++ I GFL++ +R I L +G G PE
Sbjct: 160 ---RTQAEETVRTIY-SLTVDRGADDVIVIRISGSGFLYNMVRIITGTLVKIGMGVWPPE 215
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF----------DNLTWHY--DEIEVSHVL 272
++++ +E R P + + L L E+ +N W Y D+
Sbjct: 216 YMEEI--LEARDRAAAGPTIPAKGLTLVSMEYEKEPADCVRGENRHWSYCLDQ------- 266
Query: 273 RDLHEDWSLLSIKATMLGEM 292
R L E +S+L+I+ GE+
Sbjct: 267 RHLSEGYSVLTIERCEEGEL 286
>gi|392988462|ref|YP_006487055.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
gi|392335882|gb|AFM70164.1| tRNA pseudouridine synthase A [Enterococcus hirae ATCC 9790]
Length = 249
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 98/236 (41%), Gaps = 43/236 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + + + EK GRTDSG
Sbjct: 4 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEAIISQMT----GEKIEIIGSGRTDSGT 59
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A QV K S+++ NE+ L LN LPRDI + +PE++ AR++
Sbjct: 60 HARGQVANFKTTSQMSR-------NEM--LTFLNRYLPRDIVIKKVEEMPERFHARYNAT 110
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
RN+ ++FPQ LD++ M++A Q L+G+HDF
Sbjct: 111 GKKYSYYVWNNPIPTVFERNHSFYFPQE-LDLEKMNEACQKLMGSHDF------------ 157
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ F L T + + + F GFL+ +R +M L +G G
Sbjct: 158 IGFSALKKSKKSTVRTIHELSIEQEGGMLHFTFVGNGFLYKMVRILMGTLLEIGTG 213
>gi|313888069|ref|ZP_07821747.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846024|gb|EFR33407.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 244
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 50/261 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ I +KI Y G N+HGFQ+Q ++ T+ L ++KT K GRTD GV
Sbjct: 1 MKNILIKINYDGTNFHGFQLQ-PNERTVEGELNLGIEKTV----KHPVKIFYAGRTDRGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD-- 118
A Q + + D LP K+LN NLP D+ VV VP+ + ARFD
Sbjct: 56 HAEGQYANFYSDTTI-------DIGNLP--KVLNFNLPEDVSVVDAKYVPDAFHARFDAK 106
Query: 119 ---------------CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RN Y +P +D D M +A L+G HDF + +G G
Sbjct: 107 LKKYRYVVHRSRYRHALLRNRAYEYPY-DVDPDRMREALASLIGEHDFNSF----MGRGA 161
Query: 164 VNFRRLVTHAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ V + ++++ D + F+ ++ FL + IR + + +G+G
Sbjct: 162 I----------VKDSIRSIERIDVIEDGDFLYFDFVAKSFLKNMIRIVTGTVLEIGRGQR 211
Query: 222 KPEIIQQLVDIEKYPRKPVYP 242
+ E +++ +EK RK P
Sbjct: 212 EIEYMKEA--LEKKSRKAAGP 230
>gi|255974352|ref|ZP_05424938.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|257088141|ref|ZP_05582502.1| tRNA pseudouridine synthase [Enterococcus faecalis D6]
gi|307278161|ref|ZP_07559243.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|422723100|ref|ZP_16779642.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|424672437|ref|ZP_18109400.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
gi|255967224|gb|EET97846.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|256996171|gb|EEU83473.1| tRNA pseudouridine synthase [Enterococcus faecalis D6]
gi|306505150|gb|EFM74338.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|315026898|gb|EFT38830.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|402355807|gb|EJU90568.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
Length = 246
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 108 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L + T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 155 IGFSALKKNKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|374701880|ref|ZP_09708750.1| tRNA pseudouridine synthase A [Pseudomonas sp. S9]
Length = 294
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 103/249 (41%), Gaps = 50/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y GFQ Q + ++ L KA+ K + + +C GRTD+ V A
Sbjct: 20 IALGVEYKGSRYRGFQRQKAGVPSVQESLEKAISK---VAGGAPITLSCAGRTDALVHAS 76
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV T+ E S + N NLP DI V +PE + ARF R
Sbjct: 77 AQVV------HFTTTVERSMHA---WTMGTNMNLPGDISVAWAKSMPEHFDARFCAQARR 127
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI+ M AA+Y VGTHDF C+
Sbjct: 128 YRYVIYNDQIRPAHMAEEVTWNHRP-LDIELMRSAARYFVGTHDFSAFRARQCQAKSPIK 186
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V+ +L+ H +IR+ FL H +R I VL +G G
Sbjct: 187 TVHHLQLLEHG----------------RFIVLDIRANAFLHHMVRNIAGVLMTIGAGERP 230
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 231 VEWAKEVLE 239
>gi|153816265|ref|ZP_01968933.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756]
gi|317501758|ref|ZP_07959944.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088721|ref|ZP_08337631.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA]
gi|336439604|ref|ZP_08619215.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_1_57FAA]
gi|145846448|gb|EDK23366.1| tRNA pseudouridine synthase A [Ruminococcus torques ATCC 27756]
gi|316896791|gb|EFV18876.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407244|gb|EGG86747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA]
gi|336015833|gb|EGN45635.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_1_57FAA]
Length = 271
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 103/249 (41%), Gaps = 46/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G +Y G+QIQ + T+ L KAL KE RTD+GV
Sbjct: 1 MRRIKLTVAYDGTDYCGWQIQPNG-ITVEEVLNKALSDLT----KETVKVIGASRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V +S + P E + Y +N LP DI VV V + R+
Sbjct: 56 HARGNVAVFDTKSPI--PPER-----IAY--AVNALLPDDIVVVRSEEVGCDWHPRYQNS 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y WF LDID M KAA+Y +G HDF+ C +
Sbjct: 107 IKTYEYTIVNREMPDPLRRRDSWFVSFPLDIDDMKKAARYFIGEHDFKTFCSV------- 159
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIR--SQGFLWHQIRCIMSVLFLVGQGNEK 222
H GV + + + D IR GFL++ +R I L VG+G
Sbjct: 160 -------HTGVKTTVRRIDSLDVEKKGERIKIRISGNGFLYNMVRIIAGTLVEVGRGAFA 212
Query: 223 PEIIQQLVD 231
P ++++++
Sbjct: 213 PSEVKEMLE 221
>gi|448336302|ref|ZP_21525405.1| tRNA pseudouridine synthase A [Natrinema pallidum DSM 3751]
gi|445629415|gb|ELY82700.1| tRNA pseudouridine synthase A [Natrinema pallidum DSM 3751]
Length = 285
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 117/277 (42%), Gaps = 46/277 (16%)
Query: 5 ALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIE-DKEK-SSFACCGRTDSGVS 61
A +I Y G +YHGFQ Q D T+ + + AL+ +++ D +K + +A GRTD+GVS
Sbjct: 5 AFRIAYDGTDYHGFQRQPQPDIPTVENAVFDALRALAVLDPDADKPAGYAAAGRTDAGVS 64
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A Q + L++ LT + LN LP D++ A + P+++ A
Sbjct: 65 ALAQTIALEVPDWLTP-------------RALNAELPADVRAWAAADTPDEFHATHHASR 111
Query: 122 RNYKY--WFPQA------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
R Y Y + P A +D + A L GTHD NL + N
Sbjct: 112 RAYTYHLYAPPADAAPSDSDATATAVDDERFRAACDALSGTHDIHNLTPDD-----RNTE 166
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R +T A + + + + GF +R ++S++ VG G+ +
Sbjct: 167 RSLTIAA-----------ERDGDYLVITVSAGGFARELVRRLVSLVRAVGAGDSPLAKLD 215
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD 264
++++ E P EPL L ++ +L + D
Sbjct: 216 RVLEPEPLPGHEGIAPAPPEPLVLTAVDYPDLAFEID 252
>gi|66044907|ref|YP_234748.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
B728a]
gi|63255614|gb|AAY36710.1| tRNA pseudouridine synthase [Pseudomonas syringae pv. syringae
B728a]
Length = 284
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ + ++ N NLP D+ V +P + ARF + R
Sbjct: 75 GQVVHFDT---------QAERSMKAWVMGANINLPHDVSVTWARVMPATFHARFKAIARR 125
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 126 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G
Sbjct: 185 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERP 228
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 229 IEWAREVLE 237
>gi|430842269|ref|ZP_19460184.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1007]
gi|431592117|ref|ZP_19521353.1| tRNA pseudouridine synthase A [Enterococcus faecium E1861]
gi|430493350|gb|ELA69653.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1007]
gi|430591742|gb|ELB29769.1| tRNA pseudouridine synthase A [Enterococcus faecium E1861]
Length = 247
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + EK GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEKIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + +PE++ AR++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHARYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + L+GTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLMGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELAIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|379714682|ref|YP_005303019.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
316]
gi|377653388|gb|AFB71737.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
316]
Length = 318
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 34/259 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G ++HG+ Q +S +L+ + L + GRTD+GV A
Sbjct: 37 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELIL---RHPIQLTVAGRTDAGVHAA 93
Query: 64 CQVVTLKIRS-KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV + + L + + D L ++ L LP D++V A + PE + ARF L R
Sbjct: 94 GQVAHFDVPAIALDTRSIDGDPRNL--VRRLARLLPEDVRVHACTLAPEGFDARFSALRR 151
Query: 123 NYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+Y Y P+ L DIDAM AA L+G HDF CK G +
Sbjct: 152 HYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCKHREGATTIR 211
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE- 224
+ T W +V + E ++ + F W +R ++ ++G+G ++PE
Sbjct: 212 DLQEFT-------WHDVS-TSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEG-KRPEG 262
Query: 225 -IIQQLVDIEKYPRKPVYP 242
+ L + + + PV P
Sbjct: 263 FVDSLLTETSRSSQVPVAP 281
>gi|421858395|ref|ZP_16290665.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
gi|410832074|dbj|GAC41102.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
Length = 273
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 115/278 (41%), Gaps = 44/278 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + + Y G Y G+Q Q D TI + +A+ KE ++ GRTD+GV
Sbjct: 1 MRNIGMLVSYDGTAYSGYQTQPGRD-TIQGRIEEAIHMLT----KEHATVTASGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVV-AWSPVPEKYSARFDC 119
A QVV S + P E + +N+ LP DI + AW P+ + ARF
Sbjct: 56 HALGQVVNFATESSI--PIER-------WCAAMNSRLPDDIVIWDAWE-APKSFHARFSA 105
Query: 120 LFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y + A LDI+AM +A Q+ VG HDF ++
Sbjct: 106 KRKTYRYSILAERTRDVFRRNVEFHHPAPLDIEAMRQALQHFVGEHDFTSVASPKSP--- 162
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHH---NICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+L + A + N +H + GFL++ +R I L VG+G
Sbjct: 163 ----KLTNMRTIYEARLEHELNVNHEPGRGRIHVLVTGNGFLYNMVRIIAGTLIWVGEGK 218
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
P+ I ++ + R+ P L L+ E+D
Sbjct: 219 FSPDDIVPILTAKN--RESAGPTAVPHGLTLWRVEYDG 254
>gi|299541963|ref|ZP_07052286.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1]
gi|424739401|ref|ZP_18167820.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZB2]
gi|298725701|gb|EFI66342.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1]
gi|422946798|gb|EKU41204.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZB2]
Length = 246
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 110/247 (44%), Gaps = 42/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + + I Y G + G+Q+Q + T+ L + L ++ E+ GRTD+ V
Sbjct: 1 MRRLKVIISYDGTLFSGYQVQ-PGERTVQAELERVL---AIMHKGEQVKVTASGRTDAKV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q TL + L P E+ Y K LN LPRDI+V++ V + AR+D
Sbjct: 57 HATGQ--TLHFDTSLAIPAEK-------YRKALNVQLPRDIRVLSVEEVAHDFHARYDVA 107
Query: 121 FRNYKYWFPQAGL-----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y + + +++AM +AA+ + GTHDF C N V
Sbjct: 108 GKRYRYIWSCEPIQSPFRRYYTVETNGVKPNVEAMQEAAKAITGTHDFSCFCAAN--TSV 165
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R VT +QF + H I GFL++ +R I L+ VG G K
Sbjct: 166 KDKVRTVTL---------LQF-EWHGEELHMVIEGNGFLYNMVRIIAGTLWEVGIGRRKV 215
Query: 224 EIIQQLV 230
+ + Q+V
Sbjct: 216 DNVSQVV 222
>gi|386712499|ref|YP_006178821.1| tRNA pseudouridine synthase A [Halobacillus halophilus DSM 2266]
gi|384072054|emb|CCG43544.1| tRNA pseudouridine synthase A [Halobacillus halophilus DSM 2266]
Length = 247
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 106/251 (42%), Gaps = 44/251 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ I I Y G NY G+Q+Q + T+ L K L K I K GRTDSGV
Sbjct: 1 MQRIRCIIQYDGTNYAGYQVQLNG-KTVQEKLEKVLTK---IHKGRKIKVIASGRTDSGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A QV+ KL P E + + L LP DI V PV + AR+D
Sbjct: 57 HAIGQVIHFDTELKL--PMEN-------WKRALATMLPADITVTKAEPVSSDFHARYDTT 107
Query: 120 ---------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLC--KMNVGNG 162
+F+ + Y+ + LD+ AM +A +Y+ G H+F + C K +V
Sbjct: 108 GKEYRYFIWNSKEPNIFKRHYYYHIRKELDVPAMKEACRYIEGEHNFTSFCSPKSDVKGS 167
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V R + A V + + F + GFL++ +R I+ L VG +
Sbjct: 168 KV---RTIHQASVVQKGEELI----------FQFKGSGFLYNMVRIIVGTLLEVGHHERE 214
Query: 223 PEIIQQLVDIE 233
P I +++ E
Sbjct: 215 PADIPSILEKE 225
>gi|383313577|ref|YP_005374432.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
P54B96]
gi|384503997|ref|YP_005680667.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1002]
gi|384510271|ref|YP_005689849.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
PAT10]
gi|385806846|ref|YP_005843243.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
267]
gi|387140031|ref|YP_005696009.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1/06-A]
gi|389849750|ref|YP_006351985.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
258]
gi|302330101|gb|ADL20295.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1002]
gi|341824210|gb|AEK91731.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
PAT10]
gi|355391822|gb|AER68487.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1/06-A]
gi|380869078|gb|AFF21552.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
P54B96]
gi|383804239|gb|AFH51318.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
267]
gi|388247056|gb|AFK16047.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
258]
Length = 319
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 34/259 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G ++HG+ Q +S +L+ + L + GRTD+GV A
Sbjct: 38 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELIL---RHPIQLTVAGRTDAGVHAA 94
Query: 64 CQVVTLKIRS-KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV + + L + + D L ++ L LP D++V A + PE + ARF L R
Sbjct: 95 GQVAHFDVPAIALDTRSIDGDPRNL--VRRLARLLPEDVRVHACTLAPEGFDARFSALRR 152
Query: 123 NYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+Y Y P+ L DIDAM AA L+G HDF CK G +
Sbjct: 153 HYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCKHREGATTIR 212
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE- 224
+ T W +V + E ++ + F W +R ++ ++G+G ++PE
Sbjct: 213 DLQEFT-------WHDVS-TSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEG-KRPEG 263
Query: 225 -IIQQLVDIEKYPRKPVYP 242
+ L + + + PV P
Sbjct: 264 FVDSLLTETSRSSQVPVAP 282
>gi|402299426|ref|ZP_10819037.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
gi|401725464|gb|EJS98749.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
Length = 251
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 41/247 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR +A K+ Y+G + G+Q+Q TI + +L+K I E+ GRTDS V
Sbjct: 1 MRKMACKVAYEGTYFAGYQVQ-PGKRTIQGEIEASLKK---IHKGEELRIHSSGRTDSLV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV + L P + K LN LP DI+++ V + + AR+ +
Sbjct: 57 HATGQV--FHFETSLAIPVSR-------WAKALNALLPADIRIIEAVEVSKDFHARYSAI 107
Query: 121 FRNYKY--WFPQAG--------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y + G LDI+A+ +AAQ+++G HDF C N V+
Sbjct: 108 SKQYRYRILLTKEGDLFRRNHCYHFTEMLDIEAIKEAAQHILGKHDFSAFCAAN--TSVI 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R VT + + F + GFL++ +R ++ L VG G P
Sbjct: 166 DKIRTVTRLELQHVGDELL----------FIVEGDGFLYNMVRIMVGTLLEVGTGKRDPH 215
Query: 225 IIQQLVD 231
+Q +++
Sbjct: 216 ELQAIIE 222
>gi|389573482|ref|ZP_10163556.1| tRNA pseudouridine synthase A [Bacillus sp. M 2-6]
gi|388426797|gb|EIL84608.1| tRNA pseudouridine synthase A [Bacillus sp. M 2-6]
Length = 247
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 107/240 (44%), Gaps = 42/240 (17%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G ++ G+Q+Q TI + AL + + + E GRTDSGV A QV+
Sbjct: 7 VSYDGTHFKGYQVQ-PGQRTIQTEIESALAR--MHKQDELIPIVASGRTDSGVHAKGQVI 63
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
+ L P E P+ LN+ LP DI+V+ V E + ARF + + Y+Y
Sbjct: 64 HFD--TPLAIPMER-----WPF--ALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYK 114
Query: 127 ----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
FP LD D M +AA +L+G HDF + C N V + R +
Sbjct: 115 VSTETHQNVFTRQYACHFPYR-LDADKMREAAGHLIGIHDFTSFCAAN--TEVQDKVREI 171
Query: 171 THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
T W+NV + E +R GFL++ +R I L +G G PE I+ ++
Sbjct: 172 ----YTLEWKNVS------DGLEMRVRGNGFLYNMVRIIAGTLLEIGSGKFHPEEIKAML 221
>gi|54309813|ref|YP_130833.1| tRNA pseudouridine synthase A [Photobacterium profundum SS9]
gi|51316618|sp|Q6LNU5.1|TRUA_PHOPR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|46914251|emb|CAG21031.1| Putative tRNA pseudouridine synthase A [Photobacterium profundum
SS9]
Length = 261
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 54/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q D ++ L KAL I +K + F C GRTD+GV
Sbjct: 3 IALGIEYDGAKYCGWQRQVDVD-SVQERLEKALSH---IANKPIAVF-CAGRTDTGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + D + + +N +LPRDI V + V + + ARF R
Sbjct: 58 GQVVHFDV---------DVDRQMVAWTIGVNAHLPRDISVRWATQVSDDFHARFSATARR 108
Query: 124 YKYWFPQAGL----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + L D MH+AAQYLVG HDF ++
Sbjct: 109 YRYIIYNSALRPAIFGVGVSHYHGHLDEKKMHEAAQYLVGEHDFTSV------------- 155
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICE------FNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ S W+ ++ H N+ +I++ F+ H +R I L VG+G E
Sbjct: 156 -RASQCQSRSPWRAMK----HVNVSRQGDFVIIDIKANAFVHHMVRNIAGSLIRVGRGQE 210
Query: 222 KPEIIQQLVD 231
PE ++ +++
Sbjct: 211 TPEWMKWVLE 220
>gi|422676134|ref|ZP_16735468.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aceris str.
M302273]
gi|330973842|gb|EGH73908.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aceris str.
M302273]
Length = 274
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ + ++ N NLP D+ V +P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDVSVTWARVMPATFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 116 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G
Sbjct: 175 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERP 218
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 219 IEWAREVLE 227
>gi|261409491|ref|YP_003245732.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10]
gi|329922021|ref|ZP_08277814.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5]
gi|261285954|gb|ACX67925.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10]
gi|328942404|gb|EGG38668.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5]
Length = 263
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 114/273 (41%), Gaps = 34/273 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + +K+ Y G +Y+GFQ Q +TI +L +A+++ E+ GRTD+GV
Sbjct: 1 MRNLLMKVSYDGTDYNGFQTQPGG-HTIQDYLEEAIRRLS----GEQLKITASGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV S + P E + LN LP DI V VP ++ +R
Sbjct: 56 HARAQVFNFYTASPI--PVER-------WCMALNTWLPEDIVVSDAMEVPMEFHSRHAAK 106
Query: 121 FRNYKY-----WFP-----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y++ +P LDI AM + +L+GTHDF +
Sbjct: 107 RKTYRFTINANQYPDLFNRRYQIHHHGKLDIAAMEQGLSHLIGTHDFTTFASRK--STKP 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + A + + I + GFL H +R IM L VG+G P+
Sbjct: 165 SHVRTIFDAWIEKDTSMCRPGTRDQGIIHTYVSGNGFLQHMVRIIMGTLIEVGEGKRHPD 224
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
++ V +E R P G+ L L+ ++D
Sbjct: 225 DMK--VILEAQNRAAAGPTAMGKGLMLWEVDYD 255
>gi|407892594|ref|ZP_11151624.1| tRNA pseudouridine synthase A [Diplorickettsia massiliensis 20B]
Length = 259
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 104/243 (42%), Gaps = 42/243 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I YQG +YHG+Q Q TI L A+ + +C GRTD GV A
Sbjct: 3 IALGISYQGTHYHGWQAQPQL-VTIQSTLEAAIARIA----NHPVELSCAGRTDKGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV S G +L +N LP+DI+V V E + ARF LFR
Sbjct: 58 GQVGHFDTVSHREKRG---------WLLGINTYLPQDIRVDWVEEVGEAFHARFSALFRR 108
Query: 124 YKYWF-----PQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y P A LD M +AA YL+G HDF + +
Sbjct: 109 YRYIIRNHSAPSALWNQYTTHYYRPLDEQRMQEAAMYLIGEHDFSAFRASSCQSKTPI-- 166
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
R +T V F +H + +I + FL H +R I +VL L+G G + P+ +
Sbjct: 167 REITELRV--------FRQAHRVM--IDITANAFLHHMVRNIAAVLMLIGSGKQSPKWAE 216
Query: 228 QLV 230
+++
Sbjct: 217 EVL 219
>gi|424855371|ref|ZP_18279676.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
gi|402931288|gb|EJX50875.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
Length = 246
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + VPE++ +R++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEVPERFHSRYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + LVGTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLVGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|325261709|ref|ZP_08128447.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
gi|324033163|gb|EGB94440.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
Length = 248
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 46/241 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR L ++Y G Y G+Q Q S++ T+ L +A+ + ++ GRTD GV
Sbjct: 1 MRTYKLTVVYDGSRYQGWQRQKSTEKTVQGILERAVTEVT----GRQTEIDGSGRTDGGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A Q ++ + K+ G + LNN LP DI+V V + AR+
Sbjct: 57 HAKGQTASMVLPGKVEETG---------FCASLNNALPEDIRVKEMKLVKNGFHARYNAK 107
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLC-KMNVGNG 162
D R Y Y +P L+I AM +AA+YL+GTHDF K + +
Sbjct: 108 GKRYEYFIDTREKPDVFTRKYCYHYPYE-LNIPAMEEAAEYLIGTHDFAGFTDKKDEMST 166
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+ ++ ++ DS GFL+H +R + L +G G ++
Sbjct: 167 IRTIYDII-----------IEKQDSK---IRMEFYGTGFLYHMVRILTGTLLEIGTGEKR 212
Query: 223 P 223
P
Sbjct: 213 P 213
>gi|323143617|ref|ZP_08078294.1| tRNA pseudouridine synthase A [Succinatimonas hippei YIT 12066]
gi|322416680|gb|EFY07337.1| tRNA pseudouridine synthase A [Succinatimonas hippei YIT 12066]
Length = 261
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 102/233 (43%), Gaps = 46/233 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y+G+NY GFQ Q ++ T+ L KAL +I D E S C GRTD+GV+A
Sbjct: 3 VALGVEYEGWNYAGFQRQPNA-VTVQGELEKAL---SIIAD-EPVSLVCAGRTDAGVNAT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ + I D +E L N LP DI + V E + ARF R
Sbjct: 58 GQVIHIDI---------TKDRSEKALLLGTNTKLPSDIAITWAKIVSEDFHARFSARARR 108
Query: 124 YKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y DI+ M KAA+ L+G HDF + + +
Sbjct: 109 YRYIIQNTMHRPGVLNKGVSVYHGDYDIELMQKAAKILIGEHDFASFKGADEQS------ 162
Query: 168 RLVTHAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
+S ++ V + + H F+I + FL H +R I+ L LVG
Sbjct: 163 --------SSTFRCVHYIEISRHGPFIVFDIAANAFLNHMVRNIVGSLLLVGS 207
>gi|422699954|ref|ZP_16757812.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
gi|422734009|ref|ZP_16790307.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315169224|gb|EFU13241.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315171531|gb|EFU15548.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
Length = 277
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 87
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 88 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 138
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 139 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 185
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L + T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 186 IGFSALKKNKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 245
Query: 224 EIIQQL 229
II +L
Sbjct: 246 AIIDEL 251
>gi|256830021|ref|YP_003158749.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028]
gi|256579197|gb|ACU90333.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028]
Length = 246
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 105/262 (40%), Gaps = 40/262 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M I L + Y G Y G+QIQ + TI + L + C E GRTDSGV
Sbjct: 1 MPRIRLTVAYVGTRYQGWQIQGRGE-TIQGAIEDKLARIC----GELVRVHGSGRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV + +P+ + LN LP DI ++ + + ARF
Sbjct: 56 HALAQVAHFDV---------PESKRHIPWRQALNAMLPDDISILEAREAQDDFHARFSVR 106
Query: 121 FRNYKY--W--------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y W +P GLD +AM +AA+ L GTHDF N G +
Sbjct: 107 SKRYAYTLWTEPRFTMPQRAPFVWPVRGLDFEAMDQAAEVLAGTHDFAAF--QNAGTEIK 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + V+ +H F ++ GFL +R +M +L VG+G P
Sbjct: 165 GTVRTLEPI--------VRAPGTHSAEWVFRFQADGFLKQMVRNLMGLLVEVGRGGLAPA 216
Query: 225 IIQQLVDIEKYPRKPVYPMVRG 246
++ +++ + P RG
Sbjct: 217 DVRPILEGCDRRKAPATAPARG 238
>gi|351731206|ref|ZP_08948897.1| tRNA pseudouridine synthase A [Acidovorax radicis N35]
Length = 273
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 106/249 (42%), Gaps = 36/249 (14%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +AL + Y G Y G+Q Q S NT+ L AL + S C GRTD+GV
Sbjct: 1 MTRVALGVSYNGQTYSGWQSQLSG-NTVQDKLEAALGRFA----THPVSTLCAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV + L P +++ N LP DI V PVP + AR +
Sbjct: 56 HGLMQVVHFD--TPLQRPPSS-------WVRGTNTFLPADIAVQWAQPVPHDFHARASAV 106
Query: 121 FRNYKYWFPQ--------AG--------LDIDAMHKAAQYLVGTHDFRNL--CKMNVGNG 162
R Y Y Q AG LD DAM +AA L+G HDF + +
Sbjct: 107 ARRYAYVLLQSPVRPSVDAGRVGWVYHTLDHDAMRQAADQLLGEHDFTSFRASACQAKSP 166
Query: 163 VVNFRRL-VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ +R+ + G+ + + ++ + F + FL H IR IM L +GQGN+
Sbjct: 167 IKTLQRIDIVRRGLNAPHPELGWSPCY---WRFEFEANAFLHHMIRNIMGCLIAIGQGNQ 223
Query: 222 KPEIIQQLV 230
P I +++
Sbjct: 224 PPGWITEVL 232
>gi|283795894|ref|ZP_06345047.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|291076529|gb|EFE13893.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
Length = 275
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 47/245 (19%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I + + Y G Y G+Q Q ++ NTI L L+K E GRTD+GV
Sbjct: 3 RNIKIVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLA----GEPVEIHGSGRTDAGVH 58
Query: 62 AFCQVVTLKIRSK----LTSPGEESDDN-------ELPYLKMLNNNLPRDIKVVAWSPVP 110
A QV ++ + L E +N + LN LP DI V++ VP
Sbjct: 59 ALGQVANFRLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYLPEDIAVISAMEVP 118
Query: 111 EKYSARFDCLFRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNL 154
E++ +R + + + Y Y AG LD+ AM +AA+ L+G+HDFR
Sbjct: 119 ERFHSRLNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLLAMKEAAKLLLGSHDFRAF 178
Query: 155 --CKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSV 212
K + V R++ H D + EF GFL++ +R +
Sbjct: 179 SSAKRMKKSTVRELRKIEIH------------RDGSRVLLEFT--GNGFLYNMVRILTGT 224
Query: 213 LFLVG 217
L +G
Sbjct: 225 LIEIG 229
>gi|325675475|ref|ZP_08155159.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707]
gi|325553446|gb|EGD23124.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707]
Length = 296
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 45/244 (18%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAH--HLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
L I Y G ++ G+ Q L A+ +T ++ GRTD+GV A
Sbjct: 25 LDISYDGTDFSGWARQPGRRTVCGEIEEKLSAIVRTPVL-------LTVAGRTDAGVHAS 77
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + + + P E S ++ L LPRD++V A S PE + ARF + R+
Sbjct: 78 GQVAHVDVPADMI-PEEPSR-----LVRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRH 131
Query: 124 YKYWFPQA-----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y+Y A +D+DAM KA+ L+G HDF CK G
Sbjct: 132 YEYRLTTAPYGAEPLRARDTVAWPKDVDVDAMRKASSRLLGLHDFAAFCKRR--EGATTV 189
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
R L Q + S H + F + + F W +R ++ VG+G E +
Sbjct: 190 REL----------QRFDWEQSGHELTAF-VSADAFCWSMVRSLVGAALAVGEGRRTVEWM 238
Query: 227 QQLV 230
L+
Sbjct: 239 AGLL 242
>gi|397653243|ref|YP_006493926.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 0102]
gi|393402199|dbj|BAM26691.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 0102]
Length = 291
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 116/273 (42%), Gaps = 37/273 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G ++HG+ Q +S +L+ + L + GRTD+GV A
Sbjct: 10 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELIL---RHPIQLTVAGRTDAGVHAA 66
Query: 64 CQVVTLKI-RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV + + L + + D L ++ L LP D++V A + PE + ARF L R
Sbjct: 67 GQVAHFDVPEAALDTRSIDGDPRNL--VRRLARLLPEDVRVHACTRAPEGFDARFSALRR 124
Query: 123 NYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+Y Y P+ L D++AM AA L+G HDF CK G +
Sbjct: 125 HYVYRLTTHPRGALPTRATDTAHWPKQIDMNAMQAAADVLIGLHDFAAFCKYREGATTIR 184
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
+ T W +V + E ++ + F W +R ++ ++G+G ++PE
Sbjct: 185 DLQEFT-------WHDVS-TPLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEG-KRPEG 235
Query: 226 IQQ--LVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
L + + R PV P + LNL ++
Sbjct: 236 FADSLLTETSRSSRVPVAP---AKGLNLVGVDY 265
>gi|430837433|ref|ZP_19455401.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|431506669|ref|ZP_19515495.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
gi|430487369|gb|ELA64117.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|430587056|gb|ELB25289.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
Length = 246
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + VPE++ +R++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEVPERFHSRYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + LVGTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLVGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGNGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|302187262|ref|ZP_07263935.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae
642]
Length = 274
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 104/249 (41%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 65 GQVVHFDTQAERTMKA---------WVMGANINLPHDVSVTWARVMPAAFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M +AA++LVGTHDF C+
Sbjct: 116 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEFLVGTHDFSAFRAGQCQAKSPVK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G
Sbjct: 175 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERP 218
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 219 VEWAREVLE 227
>gi|448379043|ref|ZP_21561007.1| tRNA pseudouridine synthase A [Haloterrigena thermotolerans DSM
11522]
gi|445665605|gb|ELZ18281.1| tRNA pseudouridine synthase A [Haloterrigena thermotolerans DSM
11522]
Length = 279
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 113/272 (41%), Gaps = 40/272 (14%)
Query: 5 ALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLIE-DKEK-SSFACCGRTDSGVS 61
A +I Y G +YHGFQ Q D T+ + AL+ ++E D +K + +A GRTD+GVS
Sbjct: 5 AFRIAYDGTDYHGFQRQPQPDVPTVEDAIFDALRDLSVLEPDADKPAGYAAAGRTDAGVS 64
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A Q + L+ L + LN LP D++ A + P + A
Sbjct: 65 ALAQTIALEAPDWLAP-------------RALNGRLPADVRAWAAADAPPDFHATHHATR 111
Query: 122 RNYKY--WFP------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
R Y Y + P +D D H A + L GTHD RNL + N R + A
Sbjct: 112 REYTYHLYAPLTETDGAPAVDDDRFHAACEALSGTHDVRNLTPDDH-----NTERSLALA 166
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE 233
+ + + + GF +R ++S+ VG G+ E I ++++ E
Sbjct: 167 A-----------ERDGDYLVLTVAAGGFSRELVRRLVSLARAVGTGDAPREKIDRVLEPE 215
Query: 234 KYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDE 265
P EPL L + +L + D+
Sbjct: 216 PLPGHEGIAPASPEPLVLTDVRYPDLEFEIDD 247
>gi|429214777|ref|ZP_19205940.1| tRNA pseudouridine synthase A [Pseudomonas sp. M1]
gi|428155063|gb|EKX01613.1| tRNA pseudouridine synthase A [Pseudomonas sp. M1]
Length = 332
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 100/248 (40%), Gaps = 51/248 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q ++ L +AL K E S C GRTD+ V
Sbjct: 67 IALGVEYKGARYRGWQRQEDGVPSVQGALERALSKVA----AEPVSVMCAGRTDASVHGS 122
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV R + ++ N NLP DI V +P + ARF + R
Sbjct: 123 GQVVHFDTRVERPLKA---------WVMGSNANLPADISVTWAKVMPADFHARFSAVARR 173
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M AAQ LVGTHDF + C+
Sbjct: 174 YRYVIYNDPIRPAHMAEEVTWNHRP-LDVERMRAAAQKLVGTHDFTSFRAVQCQAKSPIK 232
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V+ +++ H ++R+ FL H +R VL VG G +
Sbjct: 233 TVHHLQVLEHG----------------RFIVLDVRANAFLHHMVRNFAGVLMTVGAGERE 276
Query: 223 PEIIQQLV 230
PE + +++
Sbjct: 277 PEWVDEVL 284
>gi|304438671|ref|ZP_07398609.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368320|gb|EFM22007.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 275
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 95/235 (40%), Gaps = 42/235 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALK+ Y G NYHGFQ QT + + L AL + C E A GRTD+GV
Sbjct: 7 RNIALKVAYDGTNYHGFQRQTPPIRAVQNVLEAALAQVC----GETVELASAGRTDAGVH 62
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVV-AWSPVPEKYSARFDCL 120
A+ QVV ++ + LP + +N LP DI V AW +SAR
Sbjct: 63 AYGQVVNFFTDGRIPT-------ERLP--RAVNGLLPPDIVVSEAWE-AARDFSARHSAT 112
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y W LD DAM A L GTHD+ + + G +
Sbjct: 113 GKAYVYRMKECRVPDPFTRSYAWQIFQPLDYDAMRAALHLLEGTHDYSSF-RAAGGAPMS 171
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
R L T ++ I GFL+H +R I+S VG G
Sbjct: 172 PVRTLDT----------IRLTAEGEGRLSLYIHGTGFLYHMVRNIVSTAVAVGTG 216
>gi|375310779|ref|ZP_09776044.1| tRNA pseudouridine synthase a [Paenibacillus sp. Aloe-11]
gi|375077147|gb|EHS55390.1| tRNA pseudouridine synthase a [Paenibacillus sp. Aloe-11]
Length = 261
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 113/273 (41%), Gaps = 34/273 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + +K+ Y G Y GFQ Q + NTI +L A+ C + E+ GRTD+GV
Sbjct: 1 MRNLCMKVNYDGTEYDGFQTQPNG-NTIQDYLESAI---CSLTG-ERLKITGSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV S + P E + LN LPRDI V VP + AR
Sbjct: 56 HAYGQVFNFHTESPI--PIER-------WCLALNAWLPRDIIVTDAREVPLSFHARRMAK 106
Query: 121 FRNYKY-----WFPQ-----------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y FP LD+ AM + +L+GT D+ + +
Sbjct: 107 RKTYRYSINANRFPDIFHRRTQAHHPTKLDVQAMEQGLAHLIGTFDYTSFASRR--SQKT 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
N R + A +T + I I GFL H +R IM L VG+G + +
Sbjct: 165 NHVRTIYEAYMTVDHSFSRPGSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSAD 224
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I +++ + R P G L L+ E++
Sbjct: 225 DIPFILEAKN--RSKAGPTAVGHALTLWSVEYE 255
>gi|221195458|ref|ZP_03568513.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626]
gi|221184645|gb|EEE17037.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626]
Length = 281
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 39/235 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ +K+ Y+G + GF Q T+A L +AL + C GRTD+GVSA
Sbjct: 20 LVIKLGYRGAAFSGFAEQ-PKQRTVAGDLKQALTTVL----RRPVELTCAGRTDAGVSAL 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
Q V++ + ++ + ++P L+ L DI + +SARFD L
Sbjct: 75 AQYVSVPV---------DAHEEKIPKRQLLRSLTALTDDDISIQEIYKAQSGFSARFDAL 125
Query: 121 FRNYKY---------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R+Y+Y W+ LD+ AM++AAQ VG HDF++ CK ++
Sbjct: 126 ARSYRYRISAGLRPVLAWDHAWWYNGALDVAAMNEAAQIFVGEHDFKSFCK------ALS 179
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
TH V S Q + ++ + +I FL +R ++ L VG+G+
Sbjct: 180 AVDKPTHRYVESI-QVAEIQEAGEKLIAIDIVGNAFLHTMVRTMVGTLVEVGRGH 233
>gi|226708659|sp|B8CPW5.1|TRUA_SHEPW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212557374|gb|ACJ29828.1| tRNA pseudouridine synthase [Shewanella piezotolerans WP3]
Length = 261
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 104/249 (41%), Gaps = 48/249 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL I Y G Y+G+Q Q D ++ L KAL K E + C GRTD+GV
Sbjct: 3 VALGIEYDGSRYYGWQRQLDVD-SVQGQLEKALSKVA----NEPITVQCAGRTDTGVHGT 57
Query: 64 CQVV---TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV T IR E + +N NLP DI V V E++ ARF
Sbjct: 58 GQVVHFDTNAIRK------------ETAWTLGVNVNLPDDIAVRWVKVVDEEFHARFSAT 105
Query: 121 FRNYKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R Y+Y + +D D MH+AAQ VG HDF + +
Sbjct: 106 ARRYRYMIYNHQLRPGILRSGVSHYRGNIDEDKMHQAAQLFVGEHDFTSFRALQC-QSKT 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
FR + V IC +I++ FL H +R I+ L +G+GN+ E
Sbjct: 165 PFREI----------HEVNVTRQGMYIC-VDIKANAFLHHMVRNIVGTLLEIGKGNQPKE 213
Query: 225 IIQQLVDIE 233
+ L+ ++
Sbjct: 214 WVNTLLALK 222
>gi|343504265|ref|ZP_08741990.1| tRNA pseudouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
gi|342812217|gb|EGU47227.1| tRNA pseudouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
Length = 264
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G +Y G+Q Q + + + L++ + C GRTD+GV
Sbjct: 3 IALGIEYDGTHYFGWQRQREVQS-----VQEKLERALTLVANHPIEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + N NLP+DI V VP+++ ARFD R
Sbjct: 58 GQVVHFDT---------TASRKMVAWTMGANANLPKDIAVRWAKEVPDEFHARFDATARR 108
Query: 124 YKY---------WFPQAG-------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y Q+G LD M +A QYL+G +DF +FR
Sbjct: 109 YRYIIFNSKLRPGILQSGVSHYHGELDEVKMQQAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQN-VQFNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
+ H + W+N + N + H +I++ F+ H +R I L VG+G ++PE
Sbjct: 157 AI--HCQSRTPWRNLIHLNVTRHGQYVVIDIKANAFVHHMVRNITGSLLCVGRGEQEPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I +L+ + RK + E L L ++
Sbjct: 215 IDRLLKAKD--RKLAGATAKAEGLYLVDVDY 243
>gi|290958122|ref|YP_003489304.1| tRNA-pseudouridine synthase [Streptomyces scabiei 87.22]
gi|260647648|emb|CBG70753.1| putative tRNA-pseudouridine synthase [Streptomyces scabiei 87.22]
Length = 287
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 96/237 (40%), Gaps = 43/237 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G + G+ Q T+ + AL+ + E GRTD+GV A
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALR--TVTRSGETYELTVAGRTDAGVHAR 69
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + P ++ LK L LPRD++V A P ++ARF ++R
Sbjct: 70 GQVAHVDL------PEAVWREHHEKLLKRLAGRLPRDVRVWALREAPSGFNARFSAIWRR 123
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 124 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNEAARLLLGEHDFAAYCKRR--EGA 178
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R L Q + I +R+ F + +R ++ L VG G+
Sbjct: 179 TTIRTL----------QELSLVRGDDGIVTATVRADAFCHNMVRSLIGALLFVGDGH 225
>gi|431081481|ref|ZP_19495571.1| tRNA pseudouridine synthase A [Enterococcus faecium E1604]
gi|431121264|ref|ZP_19498297.1| tRNA pseudouridine synthase A [Enterococcus faecium E1613]
gi|430565413|gb|ELB04559.1| tRNA pseudouridine synthase A [Enterococcus faecium E1604]
gi|430567766|gb|ELB06834.1| tRNA pseudouridine synthase A [Enterococcus faecium E1613]
Length = 247
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S++ + +N LPRDI + +PE++ AR++ +
Sbjct: 57 HARGQVANFKTNSEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHARYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + L+GTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLMGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELAIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|348513719|ref|XP_003444389.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oreochromis niloticus]
Length = 421
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 116/265 (43%), Gaps = 48/265 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQ--TSSDNTIAHHLLKALQKTCLI-----EDKEKSSFACCG 54
+ + L ++Y G Y+G Q S TI L+ AL K+ I ++ +K SF C
Sbjct: 80 KKVVLLMVYSGKGYYGMQRNPGNSQFRTIEDDLVAALIKSGCIPENHGDEMKKMSFQRCA 139
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+R DD ++ +N +LP IKV+ V + ++
Sbjct: 140 RTDKGVSAAGQVVSLKVRL--------IDD----IIEKINEHLPPQIKVLGLKRVTQGFN 187
Query: 115 ARFDCLFRNYKYWFPQAGL---DIDAMHKAAQYL---------------VGTHDFRNLCK 156
++ +C R Y Y P D D + AA L GTH+F N
Sbjct: 188 SKNNCDARTYSYMLPTVAFSPKDYDTGNIAAFRLEPETLQKVNRLFALYKGTHNFHNFTS 247
Query: 157 MNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLV 216
+ + RR +T F ++ +R Q F+ HQIR ++ ++ V
Sbjct: 248 QKAPSD-PSARRYITEMSCGEP-----FIRRNYEFAVITVRGQSFMLHQIRKMIGLVIAV 301
Query: 217 GQGNEKPEII-----QQLVDIEKYP 236
+G K E++ Q+ VD+ K P
Sbjct: 302 VKGYAKEEVMERSWGQEKVDVPKAP 326
>gi|417842135|ref|ZP_12488230.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M19501]
gi|341947915|gb|EGT74556.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M19501]
Length = 269
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 122/280 (43%), Gaps = 60/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q +I L KAL +C+ EK C GRTDSGVS
Sbjct: 3 IALGIEYNGKNYYGWQRQEKV-RSIQEELEKAL--SCIA--NEKIEIFCAGRTDSGVSGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + P E + N +LP DI V V ++ ARF R
Sbjct: 58 GQVVHFE--TNVIRP-------EKAWAFGTNAHLPDDIAVSWAKQVDNEFHARFSATARR 108
Query: 124 YKYWF--------------PQAGLDIDA--MHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD+DA MH+A Q L+G HDF +FR
Sbjct: 109 YRYILYCNKLRSAILAGGMTHCHLDLDAEKMHQAGQCLLGEHDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ W+NV H N+ +I++ F+ H +R I+ L +VG GN+
Sbjct: 157 --AAQCQSHTPWRNVH----HLNVSRIGKYIIVDIQANAFVHHMVRNIVGSLIVVGAGNQ 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
E +Q L +E+ R+ P + + L L Y +FD
Sbjct: 211 PIEWMQWL--LEQKNRQLAAPTAKPDGLYLVDVIYPQKFD 248
>gi|306835272|ref|ZP_07468304.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726]
gi|304568865|gb|EFM44398.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726]
Length = 293
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 101/264 (38%), Gaps = 49/264 (18%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L + Y G N+HG+ Q T+ L + L E GRTD+GV A Q
Sbjct: 21 LDLAYDGTNFHGWAKQKGGLRTVQGVLEEQLAMIVRTE----VPLTVAGRTDAGVHARGQ 76
Query: 66 VV-------TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
V L+ RS PG ++ L LP D++V PE + ARF
Sbjct: 77 VAHVDVPQEMLEQRSVAGDPGT--------IVRRLAKLLPEDVRVHGCEFAPEGFDARFS 128
Query: 119 CLFRNYKY-------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNV 159
L R+Y Y WF +DIDAM AA LVG HDF CK
Sbjct: 129 ALRRHYVYRITTSPRGALPTRARDTAEWFKP--VDIDAMQDAATALVGLHDFAAFCKAK- 185
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
R L +WQ+V + E + + F W +R ++ VG+G
Sbjct: 186 -PNATTIRELQEF-----SWQDVS-TPEEPQLFEARVTADAFCWSMVRSLVGCCLSVGEG 238
Query: 220 NEKPEIIQQLV-DIEKYPRKPVYP 242
+ L+ + ++ R PV P
Sbjct: 239 RRDVDFAAALLQETKRSSRIPVAP 262
>gi|300814956|ref|ZP_07095184.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300510926|gb|EFK38198.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 243
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 46/256 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I +K+ Y G NYHG+QIQ TI L KA+ T K+++ GRTD GV A
Sbjct: 3 ILIKVTYDGTNYHGYQIQNKL-KTIEGELSKAINDTL----KKETKIYSAGRTDRGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF------ 117
Q V + + D LP +++N +LP DI V++ VP + ARF
Sbjct: 58 GQYVNFYTDTTI-------DLGNLP--RVINFHLPDDISVISAKEVPFDFHARFSAREKI 108
Query: 118 -----------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
+ ++ N Y +P + LD+ M+++ +YL+G DF++ +G +
Sbjct: 109 YRYVVYNNKYRNAIYHNRAYQYPFS-LDLSLMNESFKYLIGQKDFKSF----MGRDAIVK 163
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
+ T + N F+ + + FL + IR IM +G+G + P +
Sbjct: 164 DTIRTIYSIKVKKDN--------KFIYFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFM 215
Query: 227 QQLVDIEKYPRKPVYP 242
+++ +EK RK P
Sbjct: 216 KEV--LEKQNRKYAGP 229
>gi|269468479|gb|EEZ80140.1| pseudouridylate synthase [uncultured SUP05 cluster bacterium]
Length = 247
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 120/279 (43%), Gaps = 57/279 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G N+HG+Q+Q S T+ + +AL + D F C GRTD+GV A
Sbjct: 3 LALGVEYLGTNFHGWQLQKSGIRTVQQVVEQALSS---VADHPVRVF-CSGRTDAGVHAL 58
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ + +K + ++ N NLP D+ V + + ARFD R
Sbjct: 59 EQVIHFETTAK---------REDKAWVLGGNVNLPFDVNFKWAKQVNDDFHARFDAHARQ 109
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFR----NLCKMNVGNG 162
Y Y W + LDI M++AA+ L+G HDF +LC+
Sbjct: 110 YHYKIHNTPVRSAVKHAYTLWESRT-LDIKLMNQAAECLIGEHDFSSFRGSLCQAKSPIK 168
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V F RL T +G N +I++ FL H +R I+ L VG+G +
Sbjct: 169 TVEFIRL-TQSG---------------NGILLDIKANAFLHHMVRNIVGTLIKVGKGEQD 212
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTE--FDNL 259
++ ++D + + V EP LY + +DN
Sbjct: 213 SAWVKTVLDAKDRKQAG----VTAEPQGLYFVKAFYDNF 247
>gi|433461721|ref|ZP_20419324.1| tRNA pseudouridine synthase A [Halobacillus sp. BAB-2008]
gi|432189736|gb|ELK46813.1| tRNA pseudouridine synthase A [Halobacillus sp. BAB-2008]
Length = 247
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 44/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + + Y G Y G+Q+Q + NTI L KAL K I E GRTD+GV
Sbjct: 1 MQRMKFTLQYDGTAYAGYQVQPNG-NTIQAELEKALAK---IHKGETVKVTASGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV+ +P D+N + + +N+ LP DI + VPE + AR+ +
Sbjct: 57 HAMGQVI------HFDTPLSIPDEN---WKRAVNSLLPDDIMITHSEAVPEDFHARYGTV 107
Query: 121 FRNYKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLC--KMNVGNG 162
+ Y+Y+ +A LD+ AM +A + L G HDF + C K ++
Sbjct: 108 GKEYRYYVWNDRDRQLFKRHHTYHVKAELDMAAMKEACRLLEGEHDFTSFCSPKTDIKGD 167
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V R + A + + F R GFL++ +R ++ L VG+ +
Sbjct: 168 KV---RTIYEASIRKEGAEIV----------FLFRGSGFLYNMVRILVGTLLEVGRHERE 214
Query: 223 PEIIQQLV 230
P I +++
Sbjct: 215 PASIPRIL 222
>gi|126697674|ref|YP_001086571.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile 630]
gi|254973765|ref|ZP_05270237.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-66c26]
gi|255091155|ref|ZP_05320633.1| tRNA pseudouridine synthase 1 [Clostridium difficile CIP 107932]
gi|255099266|ref|ZP_05328243.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-63q42]
gi|255305049|ref|ZP_05349221.1| tRNA pseudouridine synthase 1 [Clostridium difficile ATCC 43255]
gi|255312809|ref|ZP_05354392.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-76w55]
gi|255515568|ref|ZP_05383244.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-97b34]
gi|255648663|ref|ZP_05395565.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-37x79]
gi|260681880|ref|YP_003213165.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196]
gi|260685478|ref|YP_003216611.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291]
gi|306518785|ref|ZP_07405132.1| tRNA pseudouridine synthase ACD [Clostridium difficile QCD-32g58]
gi|384359433|ref|YP_006197285.1| tRNA pseudouridine synthase ACD [Clostridium difficile BI1]
gi|423089471|ref|ZP_17077829.1| tRNA pseudouridine synthase A [Clostridium difficile 70-100-2010]
gi|115249111|emb|CAJ66922.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile 630]
gi|260208043|emb|CBA60248.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196]
gi|260211494|emb|CBE01638.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291]
gi|357558081|gb|EHJ39588.1| tRNA pseudouridine synthase A [Clostridium difficile 70-100-2010]
Length = 243
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I +KI Y G NY G+Q Q S + +++ KE++S GRTDSGV
Sbjct: 1 MRNIKIKIQYNGKNYCGWQKQPDS-----LGIQGTIERAIYDITKEETSLIGSGRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q+ KI S ++ +P LN LP+DI V+ V + + +R+
Sbjct: 56 HAIGQIANFKINSGISI-------ESIPM--ALNAKLPKDISVIEACEVNDDFHSRYSAK 106
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ YKY + LD D M A+ L+GTHDF+ M+ G+ V
Sbjct: 107 GKTYKYLVYNSKFRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGF--MSSGSSVK 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ R + ++ ++ F I GFL++ +R I+ L +G+G
Sbjct: 165 DTVRTIYDIDIS----------KKDDLITFEISGNGFLYNMVRIIVGTLVDMGRG 209
>gi|373468090|ref|ZP_09559373.1| tRNA pseudouridine synthase A [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371756483|gb|EHO45290.1| tRNA pseudouridine synthase A [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 269
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 122/280 (43%), Gaps = 60/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q ++ L KAL +C+ EK C GRTDSGVS
Sbjct: 3 IALGIEYNGQNYYGWQRQEKV-RSVQEELEKAL--SCIA--NEKIEIFCAGRTDSGVSGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + S P E + N +LP DI V V +++ ARF R
Sbjct: 58 GQVVHFETNS--VRP-------EKAWAFGTNAHLPDDIAVSWAKQVDDEFHARFSATARR 108
Query: 124 YKYWF--------PQAG--------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y AG LD++ MH+A Q L+G HDF +FR
Sbjct: 109 YRYILYCNKLRSAILAGGMTHCHLDLDVEKMHQAGQCLLGEHDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ W+NV H N+ +I++ F+ H +R I+ L VG GN+
Sbjct: 157 --AAQCQSHTPWRNVH----HLNVSRIGKYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQ 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
E +Q L +E+ R+ P + + L L Y +FD
Sbjct: 211 PIEWMQWL--LEQKNRQLAAPTAKPDGLYLVDVIYPQKFD 248
>gi|313125232|ref|YP_004035496.1| pseudouridylate synthase [Halogeometricum borinquense DSM 11551]
gi|448287171|ref|ZP_21478387.1| tRNA pseudouridine synthase A [Halogeometricum borinquense DSM
11551]
gi|312291597|gb|ADQ66057.1| pseudouridylate synthase I [Halogeometricum borinquense DSM 11551]
gi|445572917|gb|ELY27447.1| tRNA pseudouridine synthase A [Halogeometricum borinquense DSM
11551]
Length = 272
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 36/264 (13%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED--KEKSSFACCGRTDSGVSA 62
A +I Y G ++GFQ Q S T+ + AL+ ++++ ++ + +A GRTD+GVSA
Sbjct: 3 AFRIAYDGRPFYGFQRQPSV-PTVEDSIFDALRSLGVLDEDARKPTGYAAAGRTDAGVSA 61
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
Q V T + +N LP ++ A + V E++ A D R
Sbjct: 62 LAQTVAFDCPEWCTP-------------RAMNAELPESVRAWAAADVGERFHATHDAARR 108
Query: 123 NYKY--WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ 180
Y Y + P+A D AA L G HDF NL + G R VT S
Sbjct: 109 AYVYDLYAPEA--DESKAQAAADALTGEHDFHNLTPDDTGT-----VRDVT----VSVEA 157
Query: 181 NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV 240
+ +F ++ + GF ++ +R + S++ V G+ I+ ++ E P
Sbjct: 158 DGEF-------LVLSVAAGGFPYNLVRRLASIVHSVATGDRPLADIETVLGPETVPGPEG 210
Query: 241 YPMVRGEPLNLYHTEFDNLTWHYD 264
P EPL L + +T+ D
Sbjct: 211 VPTAPAEPLVLERVVYPGVTFERD 234
>gi|431792241|ref|YP_007219146.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430782467|gb|AGA67750.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 244
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 114/273 (41%), Gaps = 46/273 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + I Y G Y G+Q Q +D TI L L K E+ CGRTDSGV
Sbjct: 1 MRNFKMTISYDGSRYKGWQKQKETDLTIQGKLEAVLSKMT----GEEILVVGCGRTDSGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A + +S + L L LP DI V + V E++ AR++
Sbjct: 57 HAENYIANFHTKSTWKNEA---------ILYYLYEFLPEDIVVKSIELVDERFHARYNVK 107
Query: 120 -----------LFRN-----YKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
FRN Y Y P+ LD+ M KAAQ LVGTHDF++ N+ G
Sbjct: 108 SKTYVYKINTNRFRNVFERKYSYHIPEP-LDLIEMRKAAQVLVGTHDFQSF---NMKPGK 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R + N+ N H E + G LW+ +R I+ L G+G P
Sbjct: 164 KSTVRTIHSI-------NIAENGDH---LEIEVNGDGLLWNMVRIIVGSLIEAGRGKLNP 213
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I++++ +K R P+ + + L L ++
Sbjct: 214 SEIEKVLQEKK--RWEAGPIAQAKGLFLREVQY 244
>gi|257900124|ref|ZP_05679777.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
gi|257838036|gb|EEV63110.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
Length = 247
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S++ + +N LPRDI + +PE++ AR++ +
Sbjct: 57 HARGQVANFKTNSEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHARYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + L+GTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLMGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|289623904|ref|ZP_06456858.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289649364|ref|ZP_06480707.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi
str. 2250]
gi|416015348|ref|ZP_11562961.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|416028247|ref|ZP_11571303.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422404596|ref|ZP_16481648.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422584437|ref|ZP_16659545.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422595303|ref|ZP_16669591.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|422607822|ref|ZP_16679816.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. mori str.
301020]
gi|298159243|gb|EFI00301.1| tRNA pseudouridine synthase A [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325326|gb|EFW81393.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327689|gb|EFW83697.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330869252|gb|EGH03961.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330877919|gb|EGH12068.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330891458|gb|EGH24119.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. mori str.
301020]
gi|330985608|gb|EGH83711.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 284
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 99/240 (41%), Gaps = 50/240 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 75 GQVVHFDTQAERTMKA---------WVMGANINLPHDVSVTWARVMPATFHARFKAIARR 125
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + LD++ M AA+YLVGTHDF C+
Sbjct: 126 YRYVIYNDQIRPAHLNQEITWNHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQ 185
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
++ R+ H + ++R+ FL H +R I VL +G G E+P
Sbjct: 186 LHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTG-ERP 228
>gi|170583041|ref|XP_001896406.1| hypothetical protein Bm1_24730 [Brugia malayi]
gi|158596406|gb|EDP34751.1| hypothetical protein Bm1_24730 [Brugia malayi]
Length = 189
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 181 NVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRK 238
+++ ND +H+ + I+ +GFLWHQIRCIM++L +G GNEKP+II +L+DI P K
Sbjct: 4 SMRLNDKATHYEFLQLTIKGKGFLWHQIRCIMALLCEIGLGNEKPDIITELLDIRLMPSK 63
Query: 239 PVYPMVRGEPLNLYHTEFDN--LTWHYDEIEVSHVLRDLHEDWS-LLSIKATM 288
P+Y + PL L+ ++ L W +D + + + + + W+ S+ AT+
Sbjct: 64 PIYGLAPAFPLCLFDCSYEGSELPWRWDINSLKSIRKLVLKTWAHYQSLSATL 116
>gi|297545296|ref|YP_003677598.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296843071|gb|ADH61587.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 240
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 46/230 (20%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G NYHG+Q Q ++ T+ L KA++K E+ + RTD+GV A QV
Sbjct: 4 VQYDGTNYHGWQYQKNAI-TVQEVLQKAIKKVT----GEEVNLIGASRTDTGVHALYQVA 58
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
K +K+ P E+ LPY LN+ LP DI + V + + AR+ + YKY
Sbjct: 59 NFKTNTKI--PAEK-----LPY--ALNSVLPDDIVITQAKDVEDSFHARYSAKRKRYKYL 109
Query: 127 ---------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
W L+++ M KAA YL+GTHDF +
Sbjct: 110 ILNRKFRMPTMRNYCWHISYPLNVEKMKKAATYLIGTHDFSAFK--------------AS 155
Query: 172 HAGVTSAWQNVQ--FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ TS + V + + + I + GFL++ +R I+ L VG G
Sbjct: 156 GSSKTSTIRTVYDLIIEKNEDFINIEIEADGFLYNMVRIIVGTLSYVGLG 205
>gi|407982528|ref|ZP_11163204.1| tRNA pseudouridine(38-40) synthase [Mycobacterium hassiacum DSM
44199]
gi|407376040|gb|EKF24980.1| tRNA pseudouridine(38-40) synthase [Mycobacterium hassiacum DSM
44199]
Length = 291
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 46/253 (18%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I Y G ++ G+ Q + T+A L AL + GRTD+GV A Q
Sbjct: 17 LLIAYDGTDFAGWATQ-AGQRTVAGVLDDALSTIF----RTPVQLRAAGRTDTGVHATGQ 71
Query: 66 VVTLKIRS--------KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
V + + + + PG D P ++ L LP D++V+ + + ARF
Sbjct: 72 VAHVDVPADALHHAYPRTPRPG---DGEFTPLVRRLARFLPGDVRVLDIARAAPGFDARF 128
Query: 118 DCLFRNYKYWF--------PQAG---------LDIDAMHKAAQYLVGTHDFRNLCKMNVG 160
L R+Y Y PQ LD++AM A++L+G HDF C+
Sbjct: 129 SALRRHYAYRLSTAPYGVEPQEARYVTAWPRPLDVEAMSAGARHLIGLHDFAAFCRHR-- 186
Query: 161 NGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
G R L Q + F H I ++ + F W +R ++ L +VG+
Sbjct: 187 EGATTIRDL----------QRLDFTRDGHRITA-HVSADAFCWQMVRSLIGALLVVGEHR 235
Query: 221 EKPEIIQQLVDIE 233
+P I +L+D E
Sbjct: 236 REPGWIARLLDSE 248
>gi|238923689|ref|YP_002937205.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
gi|238875364|gb|ACR75071.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
Length = 276
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 104/239 (43%), Gaps = 41/239 (17%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
+ Y G Y G+Q+Q S+D+TI L L + GRTD+GV A QV
Sbjct: 34 VAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLA----GKPVEVIGSGRTDAGVHAVGQVA 89
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
+ + P S D +L N +LP DI V S VP+++ AR++ + + Y Y
Sbjct: 90 SFHM------PKHFSKDEIFIWL---NEHLPADIAVTDISNVPDRFHARYNAVSKTYVYT 140
Query: 128 FPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
LD D M KAA YL+G HDF+ C GN R +
Sbjct: 141 IHTGIVSDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFC----GN------RHMK 190
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLV 230
+ V + + ++ + +I + GFL + IR I L VG G + P+ + +++
Sbjct: 191 KSTVRTIF-SIDIEKTGADIV-ISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMEIL 247
>gi|384514984|ref|YP_005710076.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 809]
gi|334696185|gb|AEG80982.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 809]
Length = 291
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 34/259 (13%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G ++HG+ Q +S +L+ + L + GRTD+GV A
Sbjct: 10 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELIL---RHPIQLTVAGRTDAGVHAA 66
Query: 64 CQVVTLKI-RSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV + + L + + D L ++ L LP D++V A + PE + ARF L R
Sbjct: 67 GQVAHFDVPEAALDTRSIDGDPRNL--VRRLARLLPEDVRVHACTRAPEGFDARFSALRR 124
Query: 123 NYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+Y Y P+ L D++AM AA L+G HDF CK G +
Sbjct: 125 HYVYRLTTHPRGALPTRATDTAHWPKQIDMNAMQAAADVLIGLHDFAAFCKYREGATTIR 184
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
+ T W +V + E ++ + F W +R ++ ++G+G ++PE
Sbjct: 185 DLQEFT-------WHDVS-TPLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEG-KRPEG 235
Query: 226 IQQ--LVDIEKYPRKPVYP 242
L + + R PV P
Sbjct: 236 FADSLLTETSRSSRVPVAP 254
>gi|408480901|ref|ZP_11187120.1| tRNA pseudouridine synthase A [Pseudomonas sp. R81]
Length = 274
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ + ++ N NLP D+ V +P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDVSVTWAKVMPAHFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD + M +AAQ+LVG HDF C+
Sbjct: 116 YRYVIYNDQIRPAHLNEEITWNHRP-LDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 175 EVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERP 218
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 219 VEWAKEVLE 227
>gi|323493306|ref|ZP_08098429.1| tRNA pseudouridine synthase A [Vibrio brasiliensis LMG 20546]
gi|323312392|gb|EGA65533.1| tRNA pseudouridine synthase A [Vibrio brasiliensis LMG 20546]
Length = 264
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 110/271 (40%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q + + + L+ I C GRTD+GV
Sbjct: 3 IALCIEYNGTQYFGWQRQREVKS-----VQEKLEHALSIVANHPIEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + N NLP DI V VPE++ ARF R
Sbjct: 58 GQVVHFDT---------TASRKMVAWTMGANANLPDDIAVRWAKEVPEEFHARFSATARR 108
Query: 124 YKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y + LD MH+AAQYL+G +DF +FR
Sbjct: 109 YRYIIFNSALRPGILSSGVSHYHGELDEKKMHQAAQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
TH S W+N+ + H +I++ F+ H +R I L VG+G ++P+
Sbjct: 157 --ATHCQSRSPWRNMMHINVTRHGQYVVIDIKANAFVHHMVRNITGSLICVGRGEQEPQW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L+ + RK + E L L ++
Sbjct: 215 IEWLLAAKD--RKLAGATAKAEGLYLVDVDY 243
>gi|213513998|ref|NP_001134221.1| tRNA pseudouridine synthase A [Salmo salar]
gi|209731596|gb|ACI66667.1| tRNA pseudouridine synthase A [Salmo salar]
Length = 392
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 135/336 (40%), Gaps = 61/336 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLI-----EDKEKSSFACCG 54
R + L + Y G Y+G Q S TI L+ AL K+ I +D +K SF C
Sbjct: 50 RKVVLLLAYSGKGYYGMQRNAGSSQFKTIEDELVTALIKSGCIPDNHGDDMKKMSFQRCA 109
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ +D ++ +N+NLP I+V+ V ++
Sbjct: 110 RTDKGVSAAGQVVSLKLWM--------IED----VMEKINSNLPPQIRVLGLKRVTGGFN 157
Query: 115 ARFDCLFRNYKYWFPQAG---------------LDIDAMHKAAQYL---VGTHDFRNLCK 156
++ C R Y Y P L+ + + + Q GTH+F N
Sbjct: 158 SKNSCDARTYSYMLPTVAFSPKDYYTKNYAAFRLEPETLQRVNQLFGSYKGTHNFHNFTS 217
Query: 157 MNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLV 216
+ RR +T F E +R Q F+ HQIR ++ ++ V
Sbjct: 218 QKAAWD-PSARRYITEMSCGEP-----FVRGGAEFAEITVRGQSFMMHQIRKMIGLVIAV 271
Query: 217 GQGNEKPEII-----QQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHV 271
+G E++ ++ VD+ K P G L L FD + +
Sbjct: 272 VKGYSGDEVLKRSWGEEKVDVPKAP---------GLGLVLEKVHFDRYNKRFGGDGLHEC 322
Query: 272 LRDLHEDWSLLSIKATMLGEMIKDTVRESKCTMGDL 307
L E+ ++L+ K E I ++ E++C G +
Sbjct: 323 LEWTEEEQAILAFKE----EHIYPSIVETECQEGSM 354
>gi|302871559|ref|YP_003840195.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis
OB47]
gi|302574418|gb|ADL42209.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis
OB47]
Length = 244
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 46/249 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q Q + TI + +A++K E+ + GRTD GV
Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNK-KTIQGTIEEAIKKLT----GEEVNLIGSGRTDRGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC- 119
A Q K SK+ + ++ P LN+ LP DI V V +SAR+
Sbjct: 56 HALNQKANFKTSSKIPT-------DKFPL--ALNSVLPGDISVKDAIEVSLDFSARYSAK 106
Query: 120 ----------------LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
L RNY Y++P LD+DAM +A +Y +G +DF++ C ++
Sbjct: 107 QKTYKYLIYNKKSRPALLRNYAYYYPYE-LDVDAMQRACEYFIGEYDFKSFCSVD-SESK 164
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
RR + +A +T N C + + GFL++ R I + VG G K
Sbjct: 165 TTVRR-IYNAYLT-----------FENECIAIYLTANGFLYNMARIIAGTILDVGAGKLK 212
Query: 223 PEIIQQLVD 231
P I +++
Sbjct: 213 PMDIPLIIE 221
>gi|302060553|ref|ZP_07252094.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato K40]
Length = 284
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 103/241 (42%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 19 IALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVA----ASPVSLMCAGRTDAGVHAC 74
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 75 GQVVHFDT---------QAERSLKAWVMGANINLPHDVSV-SWARVMPATFHARFKAIAR 124
Query: 123 NYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y + LD++ M +AA+YLVGTHDF C+
Sbjct: 125 RYRYVIYNDQIRPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIK 184
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G E+
Sbjct: 185 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGAG-ER 227
Query: 223 P 223
P
Sbjct: 228 P 228
>gi|355575133|ref|ZP_09044700.1| hypothetical protein HMPREF1008_00677 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817777|gb|EHF02272.1| hypothetical protein HMPREF1008_00677 [Olsenella sp. oral taxon 809
str. F0356]
Length = 370
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 109/246 (44%), Gaps = 43/246 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L++ Y+G + GF Q T+A L +ALQ T L E C GRTD+GVSA
Sbjct: 21 LVLRLGYRGAGFAGFAEQPG-QRTVAGELRRALQ-TVLRRPVE---LECAGRTDAGVSAL 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q ++L + PGEE + ++ P DI + +SARFD R+
Sbjct: 76 AQFLSLPL-----EPGEELLKGRRLHASLVALT-PDDISIAGIYRAKAGFSARFDARGRS 129
Query: 124 YKY----------------WFPQA--GLDIDAMHKAAQYLVGTHDFRNLCKMNV-----G 160
Y+Y W+ + LD+ AM++AA L+G HDF++ CK
Sbjct: 130 YRYRICPGPARPVLAWDHSWWLRGVPALDVAAMNEAASALLGEHDFKSFCKAASAQLLEA 189
Query: 161 NGVVNFRRLV-THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+G RRL AG + ++ + ++ FL + +R ++ L VG+G
Sbjct: 190 DGRSTCRRLTRVEAG--------EVVEAGERLVVVDVEGNAFLHNMVRIMVGSLVEVGRG 241
Query: 220 NEKPEI 225
+ P +
Sbjct: 242 HRGPLV 247
>gi|71737567|ref|YP_273899.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558120|gb|AAZ37331.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 274
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 100/241 (41%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ T ++ N NLP D+ V +P + ARF + R
Sbjct: 65 GQVVHFDTQAERTMKA---------WVMGANINLPHDVSVTWARVMPATFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD++ M AA+YLVGTHDF C+
Sbjct: 116 YRYVIYNDQIRPAHLNQEITWNHRP-LDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G E+
Sbjct: 175 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGTG-ER 217
Query: 223 P 223
P
Sbjct: 218 P 218
>gi|399520878|ref|ZP_10761650.1| tRNA pseudouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399111367|emb|CCH38209.1| tRNA pseudouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 287
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 104/250 (41%), Gaps = 52/250 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y GFQ Q ++ +I HL AL K + S C GRTD+ V +
Sbjct: 20 IALGLEYKGARYRGFQRQGANVPSIQGHLENALSK---VAGGAPVSILCAGRTDASVHSS 76
Query: 64 CQVVTLKIRSKLTSPGEESDDNEL-PYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QVV + + + L ++ N NLP DI V +P + ARF + R
Sbjct: 77 GQVVHF----------DTTVERSLHAWIMGANMNLPGDISVTWAKVMPAHFHARFSAIAR 126
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + L++ M +AA LVGTHDF C+
Sbjct: 127 RYRYVIYNDPIRPAHMAEEVTWNHRP-LNVARMREAALALVGTHDFSAFRATRCQAKSPI 185
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ +L+ H +IR+ FL H +R I VL +G G
Sbjct: 186 KTVHHLQLIEHG----------------RFIVLDIRANAFLHHMVRNIAGVLMTIGAGER 229
Query: 222 KPEIIQQLVD 231
PE +++++
Sbjct: 230 PPEWAREVLE 239
>gi|387894658|ref|YP_006324955.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens A506]
gi|423692542|ref|ZP_17667062.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens SS101]
gi|387161332|gb|AFJ56531.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens A506]
gi|387998223|gb|EIK59552.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens SS101]
Length = 274
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 105/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----NSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V+W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDVS-VSWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD + M +AAQ+LVG HDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KEVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGER 217
Query: 222 KPEIIQQLVD 231
E +++++
Sbjct: 218 PVEWAKEVLE 227
>gi|254228474|ref|ZP_04921900.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|262393647|ref|YP_003285501.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|451976153|ref|ZP_21927321.1| tRNA pseudouridine synthase A [Vibrio alginolyticus E0666]
gi|151939062|gb|EDN57894.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|262337241|gb|ACY51036.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25]
gi|451929882|gb|EMD77608.1| tRNA pseudouridine synthase A [Vibrio alginolyticus E0666]
Length = 264
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 111/271 (40%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY G+Q Q + + + L+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTNYFGWQRQREVKS-----VQEELEKALSVIANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTL--KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV + K+ + + N N+P DI V VP+ + ARF
Sbjct: 58 GQVVHFDTNVTRKMVA-----------WTMGANANMPSDIAVRWAKEVPDDFHARFSATA 106
Query: 122 RNYKYW-FPQA---------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y F A LD MH+A QYL+G +DF + +
Sbjct: 107 RRYRYIIFNHALRPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFTSFRAAHC-QSRSP 165
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
FR L+ H VT H N +I++ F+ H +R I L VG+G E PE
Sbjct: 166 FRNLM-HLNVTR----------HGNYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L +E RK + E L L ++
Sbjct: 215 IKWL--LEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|422590932|ref|ZP_16665582.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878235|gb|EGH12384.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 274
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 104/242 (42%), Gaps = 54/242 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSLKAWVMGANINLPHDVSV-SWAKVMPATFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + ++R+ FL H +R I VL +G G E
Sbjct: 174 KQLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGAG-E 216
Query: 222 KP 223
+P
Sbjct: 217 RP 218
>gi|282882119|ref|ZP_06290760.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B]
gi|281298149|gb|EFA90604.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B]
Length = 243
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 46/256 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I +K+ Y G NYHG+Q+Q TI L KA+ T K+++ GRTD GV A
Sbjct: 3 ILIKVTYDGTNYHGYQVQNKL-KTIEGELSKAINNTL----KKETKIYSAGRTDRGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF------ 117
Q V + + D LP +++N +LP DI V++ VP + ARF
Sbjct: 58 GQYVNFYTDTTI-------DLGNLP--RVINFHLPDDISVISAKEVPFDFHARFSAKEKI 108
Query: 118 -----------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
+ ++ N Y +P + LD+ M+++ +YL+G DF++ +G +
Sbjct: 109 YRYVVYNNKYRNAIYHNRAYQYPFS-LDLSLMNESFKYLIGQKDFKSF----MGRDAIVK 163
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
+ T + N F+ + + FL + IR IM +G+G + P +
Sbjct: 164 DTIRTIYSIKVKKDN--------KFIYFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFM 215
Query: 227 QQLVDIEKYPRKPVYP 242
+++ +EK RK P
Sbjct: 216 KEV--LEKQNRKYAGP 229
>gi|70729445|ref|YP_259183.1| tRNA pseudouridine synthase A [Pseudomonas protegens Pf-5]
gi|68343744|gb|AAY91350.1| tRNA pseudouridine synthase A [Pseudomonas protegens Pf-5]
Length = 274
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 57/252 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L KAL + +C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVPSVQETLEKALSRVA----DSPVVVSCAGRTDAGVHAC 64
Query: 64 CQVV---TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV T +RS ++ N NLP DI V +P + ARF +
Sbjct: 65 GQVVHFDTQAVRSMKA------------WVMGANINLPHDISVSWAKEMPAHFHARFKAI 112
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNV 159
R Y+Y W + LDI+ M +AA +LVGTHDF C+
Sbjct: 113 ARRYRYVIYNDQIRPAHLNEEITWNHRP-LDIERMAQAAAFLVGTHDFSAFRAGQCQAKS 171
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 172 PIKEIHHLRVTRHG----------------KMIVLDIRASAFLHHMVRNIAGVLMTIGAG 215
Query: 220 NEKPEIIQQLVD 231
E +++++
Sbjct: 216 ERPVEWAREVLE 227
>gi|292670303|ref|ZP_06603729.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541]
gi|292648034|gb|EFF66006.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541]
Length = 260
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 109/273 (39%), Gaps = 44/273 (16%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G YHGFQ Q+ + + L AL + C E A GRTD+GV
Sbjct: 7 RNLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVC----GETVELAAAGRTDAGVH 62
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVV-AWSPVPEKYSARFDCL 120
A QVV ++ + LP + +N LP DI V AW +SAR
Sbjct: 63 ACGQVVNFFTDGRIPT-------ERLP--RAVNGLLPPDIAVTDAWE-AARDFSARHSAK 112
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y Q LD++AM A LVGTHD+ + G +
Sbjct: 113 GKAYVYRMEQCTVPNPFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSF--RAAGGAPM 170
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + ++ D + GFL+H +R IMS + VGQ E+
Sbjct: 171 SPVRTI---------DEIRLEDEGEGRLSCYLHGNGFLYHMVRNIMSTVVSVGQ--ERIS 219
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+ + R+ P L L H ++D
Sbjct: 220 VGRFAEIFAARDRRLASPTAPACGLYLLHVDYD 252
>gi|308814270|ref|XP_003084440.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus
tauri]
gi|116056325|emb|CAL56708.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus
tauri]
Length = 705
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 107/266 (40%), Gaps = 42/266 (15%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFC 64
A+ I Y G NY GFQ Q + ++ L + L + E ++ GRTD GV A
Sbjct: 18 AMTISYDGTNYKGFQRQGADVASVQRELERCLTR-LTGEGRDALRLGGSGRTDGGVHARG 76
Query: 65 QVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVA-WSPVPEKYSARFDCLFRN 123
QVV S ++ +K +N LPRD++ W P P + ARF +
Sbjct: 77 QVVHFYSEKDW-----RSAEDFARCVKAMNGMLPRDVRCERFWRPHP-AFHARFHATRKT 130
Query: 124 YKYW---------FPQA--------GLDIDAMHKAAQYLVGTHDFRNLCKMN----VGNG 162
Y Y+ F +A D+DA+ +A QY VGT DFR + +
Sbjct: 131 YAYYVDARSPHDVFARAYACQCGWRACDVDALRRACQYFVGTRDFRAFANTSRDKPTSDE 190
Query: 163 VVNFRRLVTHAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+N R + +F+ + + GFL+ Q+R ++ +V G
Sbjct: 191 DLNTTRTI-----------FRFDVFEQADGLIRLECEGDGFLYRQVRNMVGAALVVASGR 239
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRG 246
EKPE I L+ R P RG
Sbjct: 240 EKPEWILDLLASGDRRRVPTAAPARG 265
>gi|89893262|ref|YP_516749.1| hypothetical protein DSY0516 [Desulfitobacterium hafniense Y51]
gi|89332710|dbj|BAE82305.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 271
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 104/248 (41%), Gaps = 44/248 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK+ Y G YHGFQ Q L+A+ + +E+ + GRTD+GV
Sbjct: 5 RNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLV---EEEVTLNTAGRTDTGVH 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV + +++ +++P K N+ LPRDI+++A E + ARF +
Sbjct: 62 AAGQVVNFRTGARIPV-------DKIP--KAFNSLLPRDIRILAAQEAAENFHARFSAKW 112
Query: 122 RNYKYWF---PQAG-------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y Y P A LD M + AQYLVG H+F+ G
Sbjct: 113 KRYDYRIDNHPVADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSA--AGGTSKT 170
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG----QGNE 221
F R + V N H I GFL++ +R I L VG Q E
Sbjct: 171 FERTLYLCQVAE-------NQGHLRITCI---GDGFLYNMVRIIAGTLVYVGKNRIQPGE 220
Query: 222 KPEIIQQL 229
P+I+ L
Sbjct: 221 IPDILASL 228
>gi|89900579|ref|YP_523050.1| tRNA pseudouridine synthase A [Rhodoferax ferrireducens T118]
gi|123278889|sp|Q21XI4.1|TRUA_RHOFD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|89345316|gb|ABD69519.1| tRNA pseudouridine synthase A [Rhodoferax ferrireducens T118]
Length = 260
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 106/244 (43%), Gaps = 44/244 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y G+Q Q S T+ L AL K + S C GRTD+GV
Sbjct: 3 LALGVSYNGQAYQGWQSQLSR-QTVQDQLEMALSKLA----SHRVSTLCAGRTDAGVHGL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ +P + + ++ +++ N LPRDI V PVP ++ R L R
Sbjct: 58 MQVI------HFDTPLDRAPNS---WVRGTNALLPRDIAVEWARPVPPEFHCRASALSRR 108
Query: 124 YKYWF-----------PQAG-----LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y Y Q G L+ AM +AA +L+G HDF + FR
Sbjct: 109 YAYILLESPVRPSIDAGQVGWTFKPLEQVAMQQAASHLLGEHDFSS------------FR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
A ++ + + S H C F + FL H IR IM L VGQG + PE +
Sbjct: 157 ASACQA-LSPVKMLQRLDISRHGACWRFEFEANAFLHHMIRNIMGCLITVGQGKKPPEWL 215
Query: 227 QQLV 230
++++
Sbjct: 216 KEVL 219
>gi|337751700|ref|YP_004645862.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus KNP414]
gi|336302889|gb|AEI45992.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus KNP414]
Length = 258
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 37/279 (13%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR IA+K+ Y G YHGFQ Q + L++ L EK GRTD+GV
Sbjct: 1 MRNIAMKVSYDGTAYHGFQTQPELVT-----VQDELEQAILFLTGEKVKLTSSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV+ L+ +++ P + + +N+ LP DI V VP ++ AR
Sbjct: 56 HAKGQVINLQTEARI--PVDR-------WCHAMNSRLPDDIVVWHAEEVPAEFHARRSAK 106
Query: 121 FRNYKYW---------------FPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y F G LD+++M K +L+G HDF + C + V
Sbjct: 107 RKTYRYTIRCGRFMDPFKRRFEFHHPGKLDVESMRKGLLHLIGEHDFTSYCSTRTAS--V 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + A + + + +I + GFL++ +R I+ L VG+G
Sbjct: 165 SHVRTIYDAYIECEPVDQELQSYAMHIF---VTGNGFLYNMVRIIVGTLMEVGEGKRSSN 221
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY 263
I +++ R P L L+ +D Y
Sbjct: 222 AIGEILAARN--RSKAGPTAMAHGLMLWEVFYDKEAKKY 258
>gi|332653968|ref|ZP_08419712.1| tRNA pseudouridine synthase A [Ruminococcaceae bacterium D16]
gi|332517054|gb|EGJ46659.1| tRNA pseudouridine synthase A [Ruminococcaceae bacterium D16]
Length = 250
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 122/280 (43%), Gaps = 51/280 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IALK++Y G YHG+Q+Q ++ ++A L KAL K + GRTD+GV
Sbjct: 3 RNIALKLMYNGTAYHGWQVQKNAI-SVAETLEKALSTVVCHPVKCTGA----GRTDAGVH 57
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A +V R+ T P + +P +N LPRDI VV + VP +++A C
Sbjct: 58 A--EVYIANFRTTSTIPCDR-----IPL--AVNTRLPRDIVVVKATEVPMEFNAIGSCHR 108
Query: 122 RNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y Y WF LD M +AA VGTHDFR + +VG
Sbjct: 109 KEYTYRIYNSRLGNPFYVDRAWFYPKYLDEKIMQQAADQFVGTHDFRAV--RSVGTETRT 166
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R V + VT H + E + + GFL++ +R + + +G P+
Sbjct: 167 TVRTVYYFDVT----------RHDQLIECKVCANGFLYNMVRAMTGTIVYAAEGKLSPQD 216
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDE 265
I + +E R P V P LY T+ W YDE
Sbjct: 217 IPAI--LESGNRTLAGPTV--PPGGLYMTKL----W-YDE 247
>gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
Length = 247
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 43/272 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + L + Y G NY G+Q+Q + TI L + L K E+ + RTDSGV
Sbjct: 1 MKRVKLIVAYDGTNYCGWQVQPNGI-TIEQVLNENLSKLL----GEEITVTGASRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+ V +++ + +++ + LN LP DI V VP + R+
Sbjct: 56 HSMGNVAIFDTETRMPA-------DKISF--ALNQRLPEDIVVQDSCEVPSDWHPRYQVS 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y +F LD+D M +AA YLVG HDF++ C VG V
Sbjct: 107 RKTYEYRILNRTFRMPNRRLDTYFYHHKLDVDKMKQAASYLVGEHDFKSFCA--VGAQVK 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + + + ++I + GFL++ +R I L VG G P+
Sbjct: 165 TTTRTI---------YSCEVEKDGNDIITIRVTGNGFLYNMVRIIAGTLIRVGGGEMAPD 215
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I Q+ + K R P L + E+
Sbjct: 216 EIPQI--LGKKDRTAAGPTAPAHGLTMMGIEY 245
>gi|149926375|ref|ZP_01914636.1| tRNA pseudouridine synthase A [Limnobacter sp. MED105]
gi|149824738|gb|EDM83952.1| tRNA pseudouridine synthase A [Limnobacter sp. MED105]
Length = 254
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 116/274 (42%), Gaps = 49/274 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M + L + Y G + G+Q Q T+ +L KA++ +E + C GRTD+GV
Sbjct: 1 MNRVVLGLCYDGHEFEGWQTQPHG-RTVQDYLTKAIEAIA----QEPIALTCAGRTDTGV 55
Query: 61 SAFCQVVTLKIRSK--LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
A QVV ++ LT+ ++K +NN+LP I V + + ARF
Sbjct: 56 HARQQVVHFDTAAERPLTA-----------WVKGVNNSLPSSISVQGAKQIDSGFHARFS 104
Query: 119 CLFRNYKYWFPQA---------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ R Y+Y+F A LD+ AM +AA L+GTHDF + +
Sbjct: 105 AVSRTYRYYFYSAPVRDPFKRFMTWVHYPLDLAAMRRAAVCLLGTHDFSAF-RASQCQAA 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
R L N+ D H C F I FL H +R +M L VGQ +
Sbjct: 164 SPVRTLYA--------LNLIEADDH---CYFEIHGNAFLHHMVRNLMGSLMEVGQHRQSE 212
Query: 224 EIIQQ-LVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+Q LV + YP + L+L++ E+
Sbjct: 213 AWLQDVLVSKNRSLAAKTYP---AQGLSLWNIEY 243
>gi|240948735|ref|ZP_04753107.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305]
gi|240296951|gb|EER47529.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305]
Length = 262
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 114/272 (41%), Gaps = 60/272 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y G+Q Q S + ++ L +AL C GRTDSGV
Sbjct: 3 IALGIEYDGSRYFGWQRQESVE-SVQQKLEEALSTVA----NSPVEVFCAGRTDSGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNE--LPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV E+D N + N +LP DI V VPE + ARF
Sbjct: 58 GQVVHF-----------ETDANRPLQAWCFGTNAHLPDDIAVKWAVEVPEDFHARFSATA 106
Query: 122 RNYKYW----------FPQA------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y P+ LD + MH+A QYL+G +DF +
Sbjct: 107 RRYRYIIFNRKLRSAILPKGVSHYHVDLDHEKMHEAGQYLLGENDFSS------------ 154
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQG 219
FR + + W+N+ H N+ +I++ F+ H +R I+ L VGQG
Sbjct: 155 FRAAKCQS--HTPWRNIH----HLNVSRLGAYIIVDIQANAFVHHMVRNIVGSLIEVGQG 208
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNL 251
N+ PE I+ L +E+ R P + E L L
Sbjct: 209 NQPPEWIKWL--LEQKDRTLAAPTAKAEGLYL 238
>gi|436840540|ref|YP_007324918.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432169446|emb|CCO22814.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 276
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 121/276 (43%), Gaps = 45/276 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
++ + L + Y G ++ G+Q Q + T+ L KA+ + S GRTDSGV
Sbjct: 10 VKRLKLTLAYDGTDFCGWQFQPNL-RTVQGELEKAISHITGFPVRVHGS----GRTDSGV 64
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q+V L + TS +P+ K LN+ LP D+ V+ + V + +RF +
Sbjct: 65 HARGQIVHLDLPDNRTS---------VPWQKSLNSLLPDDVTVLDCAYVSGDFHSRFSTV 115
Query: 121 FRNYKY--W------FPQ--------AGLDIDAMHKAAQYLVGTHDFRNLCKMN--VGNG 162
+ Y Y W FP LD+DAM +A + +G HDF + M V +
Sbjct: 116 RKRYSYSIWVENDFCFPWRRKYVWKCGSLDLDAMDQAMKMFLGMHDFASFQNMGTEVNST 175
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
V N G T H I + ++ GFL +R ++ L +G+G EK
Sbjct: 176 VRNVLEFSRRPGETP-----------HEI-KLDVCGTGFLKQMVRNMVGCLVKIGRGKEK 223
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPL-NLYHTEFD 257
PE ++ L+ ++ P RG L +Y+ E D
Sbjct: 224 PEFVRSLLQMKDRTMAPATAPARGLCLERVYYGESD 259
>gi|421727195|ref|ZP_16166359.1| tRNA pseudouridine synthase A [Klebsiella oxytoca M5al]
gi|410371986|gb|EKP26703.1| tRNA pseudouridine synthase A [Klebsiella oxytoca M5al]
Length = 270
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 109/252 (43%), Gaps = 60/252 (23%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q ++ L KAL + E + C GRTD+GV
Sbjct: 12 IALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVA----NEPVNVFCAGRTDAGVHGT 66
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + R++ + + +N NLP DI V PVP+ + ARF R
Sbjct: 67 GQVVHFETRAQ---------RQDAAWTLGVNANLPGDIAVRWVKPVPQDFHARFSATARR 117
Query: 124 YK-------------------YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
Y+ Y+ P LD + M +AAQ L+G +DF
Sbjct: 118 YRYVIYNHRLRPAVLSRGVTHYYLP---LDAERMQRAAQCLLGENDF------------T 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQ 218
+FR + + + W+NV H N+ + +I++ F+ H +R I+ L VG
Sbjct: 163 SFRAVQCQS--RTPWRNVM----HINVTRYGAYVVVDIKANAFVHHMVRNIVGSLMEVGA 216
Query: 219 GNEKPEIIQQLV 230
GN+ I +L+
Sbjct: 217 GNQPESWIAELL 228
>gi|423073078|ref|ZP_17061821.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DP7]
gi|361855908|gb|EHL07842.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DP7]
Length = 271
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 110/268 (41%), Gaps = 40/268 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK+ Y G +YHGFQ Q L+A+ + +E+ + GRTD+GV
Sbjct: 5 RNICLKVAYDGTHYHGFQRQPEFHGPTIQGTLEAVWAKLV---EEEVTLNTAGRTDTGVH 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV + +++ ++P K N+ LPRDI+++A E + ARF +
Sbjct: 62 AAGQVVNFRTGARIPVA-------KIP--KAFNSLLPRDIRILAAQEAAENFHARFSAKW 112
Query: 122 RNYKYWF---PQAG-------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y Y P A LD M + AQYLVG H+F+ G
Sbjct: 113 KRYDYRIDNHPVADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSA--AGGTSKT 170
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
F R + V N H I GFL++ +R I L VG+ +P
Sbjct: 171 FERTLYLCQVAE-------NQGHLRITCI---GDGFLYNMVRIIAGTLVYVGKNRIQPGE 220
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYH 253
I ++ R V +G L+ H
Sbjct: 221 IPDILASLDRKRGGVTATPQGLTLSYVH 248
>gi|388468365|ref|ZP_10142575.1| tRNA pseudouridine synthase A [Pseudomonas synxantha BG33R]
gi|388011945|gb|EIK73132.1| tRNA pseudouridine synthase A [Pseudomonas synxantha BG33R]
Length = 274
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 105/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V+W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDVS-VSWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD + M +AAQ+LVG HDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNEEITWNHRP-LDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KEVHHLRVTRHG----------------KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGER 217
Query: 222 KPEIIQQLVD 231
E +++++
Sbjct: 218 PVEWAREVLE 227
>gi|160878286|ref|YP_001557254.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
gi|160426952|gb|ABX40515.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
Length = 264
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 116/263 (44%), Gaps = 43/263 (16%)
Query: 2 RPIALKILYQGFNYHGFQ---IQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDS 58
R I L I Y G NY G+Q + D++I L + L K L E GRTD+
Sbjct: 9 RNIKLIISYDGTNYSGWQRIPKAANGDHSIQGLLEEFLSKVLL----EPIKLIGSGRTDT 64
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
GV A QV RS L D + KM N LP DIK++ + V + +RFD
Sbjct: 65 GVHALGQVANFYSRSNL--------DVNIIRQKM-NQVLPEDIKILQANEVDLNFHSRFD 115
Query: 119 CL-----------------FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ FR Y Y + LDI+AM +AA+ L+GT D+++ C + +
Sbjct: 116 AVEKIYQYIIDTKERESVFFRKYSYSCGK-DLDIEAMRQAAKLLIGTMDYKSFC-TDRKD 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
G R T + +T + ++ N + I F R GFL H IR I L VG
Sbjct: 174 GKSTIR---TISEIT--IEELRQNRNQQGII-FTFRGNGFLHHMIRIISGTLLEVGTQER 227
Query: 222 KPEIIQQLVDIEK--YPRKPVYP 242
E ++Q + +K Y +YP
Sbjct: 228 SVESVRQAILGKKREYAGITLYP 250
>gi|359779674|ref|ZP_09282901.1| tRNA pseudouridine synthase A [Pseudomonas psychrotolerans L19]
gi|359372290|gb|EHK72854.1| tRNA pseudouridine synthase A [Pseudomonas psychrotolerans L19]
Length = 283
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 49/247 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q ++ L AL + + C GRTD GV A
Sbjct: 15 IALGVEYKGARYRGWQRQQPGVRSVQETLEDALSEVA----AAPIALHCAGRTDCGVHAT 70
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + S + P + ++ N NLP DI V PV ++ ARF + R
Sbjct: 71 GQVVHFE--SPVARPLKA-------WVMGTNANLPSDISVTWVKPVSNEFHARFSAMARR 121
Query: 124 YKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNGV 163
Y+Y + L I+ M +AAQ L+GTHDF + C+
Sbjct: 122 YRYVIYNDPIRPAHLAEEVTWNHRPLRIEPMREAAQVLLGTHDFTSFRAKACQAKSAIKT 181
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
++ RL WQ+ + + +IR+ FL H +R I VL VG G
Sbjct: 182 IHHLRL---------WQSGR-------LIVLDIRANAFLHHMVRNIAGVLMAVGCGERPV 225
Query: 224 EIIQQLV 230
E + +++
Sbjct: 226 EWVAEVL 232
>gi|28898964|ref|NP_798569.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD
2210633]
gi|260365288|ref|ZP_05777845.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030]
gi|260878838|ref|ZP_05891193.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|260896240|ref|ZP_05904736.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|260899991|ref|ZP_05908386.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037]
gi|417319306|ref|ZP_12105864.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 10329]
gi|433658273|ref|YP_007275652.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus BB22OP]
gi|31340461|sp|Q87MP1.1|TRUA_VIBPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|28807183|dbj|BAC60453.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD
2210633]
gi|308088841|gb|EFO38536.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|308094227|gb|EFO43922.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|308107376|gb|EFO44916.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037]
gi|308115414|gb|EFO52954.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030]
gi|328474496|gb|EGF45301.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 10329]
gi|432508961|gb|AGB10478.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus BB22OP]
Length = 264
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 111/271 (40%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY G+Q Q + + + L+K I C GRTD+GV
Sbjct: 3 IALGIEYNGTNYFGWQRQREVKS-----VQEELEKALSIVANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTL--KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV + K+ + + N N+P DI V VP+ + ARF
Sbjct: 58 GQVVHFDTNVNRKMVA-----------WTMGANANMPSDIAVRWAKEVPDDFHARFSATA 106
Query: 122 RNYKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y LD MH+A QYL+G +DF + + + ++
Sbjct: 107 RRYRYIIFNHALRPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQS--LS 164
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R + H VT H + +I++ F+ H +R I L VG+G EKPE
Sbjct: 165 PCRNLMHLNVTR----------HGDYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L +E RK + E L L ++
Sbjct: 215 IKWL--LEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|448341948|ref|ZP_21530902.1| tRNA pseudouridine synthase A [Natrinema gari JCM 14663]
gi|445626658|gb|ELY80000.1| tRNA pseudouridine synthase A [Natrinema gari JCM 14663]
Length = 287
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 116/279 (41%), Gaps = 48/279 (17%)
Query: 5 ALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFACCGRTDSGVS 61
A +I Y G +Y+GFQ Q D T+ + AL+ ++ E + + +A GRTD+GVS
Sbjct: 5 AFRIAYDGTDYYGFQRQPQPDIPTVEDAVFDALRALSVLDPEADKPAGYAAAGRTDAGVS 64
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A Q + L++ LT + LN LP D++ A + P+ + A
Sbjct: 65 ALAQTIALEVPDWLTP-------------RALNAELPADVRAWAAADAPDGFHATHHASR 111
Query: 122 RNYKYWF---------PQAGLDIDA-------MHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y Y P + +D+ A A L GTHD NL + N
Sbjct: 112 RAYTYHLYAPPADAAVPDSAVDVTAPAVDDERFRAACDALSGTHDIHNLTPDD-----RN 166
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R +T A V+ + + I + + GF +R ++S++ VG G+
Sbjct: 167 TERSLTIA--------VERDGDYLVIT---VSAGGFARELVRRLVSLVRAVGAGDSPLAK 215
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD 264
I ++++ E P EPL L ++ NL + D
Sbjct: 216 IDRVLESEPLPGHEGIAPAPPEPLVLTAVDYPNLAFEID 254
>gi|284047733|ref|YP_003398072.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM
20731]
gi|283951954|gb|ADB46757.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM
20731]
Length = 245
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 104/236 (44%), Gaps = 42/236 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
+R I + Y G Y GFQ Q + + L KAL + KE GRTD+GV
Sbjct: 2 IRTIKATVAYDGTRYQGFQRQKNGVG-VQQVLEKALTEVL----KEPILIKAAGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV++ S++ P E Y + L +LP DI + V + + ARFD +
Sbjct: 57 HALGQVISFATSSRI--PPEN-------YRRALEPHLPPDIAIREAEVVRDDFHARFDAV 107
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y W + LD++AM++AA L+G HDF + N G+
Sbjct: 108 DKTYQYKIYYSPLPDPTQRNTTWEIREKLDVEAMNRAAALLLGKHDFTSF--KNQGSQDT 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ R +T A W VQ N+ F I GFL+ +R I+ L VG G
Sbjct: 166 SPVRTLTEA----HW--VQ----DGNLYTFTITGDGFLYRMVRNIVGCLVRVGTGQ 211
>gi|162533082|ref|YP_001621406.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213971672|ref|ZP_03399779.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1]
gi|301386519|ref|ZP_07234937.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato
Max13]
gi|302134665|ref|ZP_07260655.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422660536|ref|ZP_16722946.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|118201619|gb|ABK79682.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213923557|gb|EEB57145.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1]
gi|331019139|gb|EGH99195.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 274
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 104/242 (42%), Gaps = 54/242 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVA----ASPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSLKAWVMGANINLPHDVSV-SWARVMPATFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + ++R+ FL H +R I VL +G G E
Sbjct: 174 KQLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGAG-E 216
Query: 222 KP 223
+P
Sbjct: 217 RP 218
>gi|310659467|ref|YP_003937188.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) [[Clostridium]
sticklandii]
gi|308826245|emb|CBH22283.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) [[Clostridium]
sticklandii]
Length = 249
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 116/258 (44%), Gaps = 42/258 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + I Y G NY+G+Q Q ++ ++ + KA+ K K+++ GRTD+ V
Sbjct: 1 MRNILILIEYDGTNYNGWQRQPNA-ASVQEEIEKAIYKVT----KKQTDIYGSGRTDAKV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV S + P E+ + LN NLP DI ++ VPE++ +R+
Sbjct: 56 HALGQVANFHTDSAI--PTEK-------FAVALNTNLPDDIVILNSIEVPEEFHSRYSAK 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y + + LD+D + A+ L+G HDF+ + G+ V
Sbjct: 107 VKTYRYRVLNTPVRRPIERNYAYHVREDLDLDIIKTMAKLLIGEHDFKAFS--SSGSSVK 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + +T ++I EF GFL++ +R I+ L +G+ + + +
Sbjct: 165 TTIRTIYDIKIT----------KENDIIEFEFTGNGFLYNMVRIIVGTLIELGKKSTRYD 214
Query: 225 IIQQLVDIEKYPRKPVYP 242
I + L+ ++ P P
Sbjct: 215 IQRALMTGDRGFAGPTAP 232
>gi|422344507|ref|ZP_16425432.1| tRNA pseudouridine synthase A [Selenomonas noxia F0398]
gi|355376576|gb|EHG23818.1| tRNA pseudouridine synthase A [Selenomonas noxia F0398]
Length = 267
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 109/273 (39%), Gaps = 44/273 (16%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G YHGFQ Q+ + + L AL + C E A GRTD+GV
Sbjct: 14 RNLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVC----GETVELAAAGRTDAGVH 69
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVV-AWSPVPEKYSARFDCL 120
A QVV ++ + LP + +N LP DI V AW +SAR
Sbjct: 70 ACGQVVNFFTDGRIPT-------ERLP--RAVNGLLPPDIAVTDAWE-AARDFSARHSAK 119
Query: 121 FRNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y Q LD++AM A LVGTHD+ + G +
Sbjct: 120 GKAYVYRMEQCIVPNPFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSF--RAAGGAPM 177
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + ++ D + GFL+H +R IMS + VGQ E+
Sbjct: 178 SPVRTI---------DEIRLEDEGEGRLSCYLHGNGFLYHMVRNIMSTVVSVGQ--ERIS 226
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+ + R+ P L L H ++D
Sbjct: 227 VGRFAEIFAARDRRLASPTAPACGLYLLHVDYD 259
>gi|291562296|emb|CBL41112.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4]
Length = 344
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 124/300 (41%), Gaps = 55/300 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G Y G+Q+Q + TI L KAL KE RTDSGV
Sbjct: 1 MRRIKLTVAYDGTAYKGWQLQPNG-VTIEEMLNKALSDLL----KEPVCVIGASRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V S++ PG++ + +N LP DI+VV VP + R
Sbjct: 56 HARGNVAVFDTESRI--PGDK-------FCYAVNRGLPEDIRVVESEEVPLDWHPRKQNC 106
Query: 121 FRNYKY-------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ Y+Y ++P L+++ M++AA+YL+G HDF + C N
Sbjct: 107 VKTYEYQILNCKIEIPTRRLYAHFCYYP---LNVEKMNEAAKYLIGEHDFISFCAAN--- 160
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
T V+ ND +I + GFL++ +R I L VG G
Sbjct: 161 ------HQAEETVRTIYGAEVKKND--EDIVTIRLCGSGFLYNMVRIIAGTLLKVGTGEW 212
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSL 281
+PE ++++ +E RK + L L E++ EI + + R+ H D L
Sbjct: 213 EPEHVKEV--LEARNRKEAGQTAPAKGLTLVGIEYER------EIPMEIIGRNEHWDAVL 264
>gi|337290062|ref|YP_004629083.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans BR-AD22]
gi|334698368|gb|AEG83164.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans BR-AD22]
Length = 291
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 107/258 (41%), Gaps = 32/258 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G ++HG+ Q +S +L+ + L + GRTD+GV A
Sbjct: 10 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELIL---RHPIQLTVAGRTDAGVHAA 66
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + D N ++ L LP D++V A + PE + ARF L R+
Sbjct: 67 GQVAHFDV-PEAALDTRSIDGNPRNLVRRLARLLPEDVRVHACTRAPEGFDARFSALRRH 125
Query: 124 YKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y Y P+ L D++AM AA L+G HDF CK G +
Sbjct: 126 YVYRLTTHPRGALPTRATDTAHWPKQIDMNAMQAAADVLIGLHDFAAFCKYREGATTIRD 185
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
+ T W +V + E ++ + F W +R ++ ++G+G ++PE
Sbjct: 186 LQEFT-------WHDVS-TPLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEG-KRPEGF 236
Query: 227 QQ--LVDIEKYPRKPVYP 242
L + + R PV P
Sbjct: 237 ADSLLTETSRSSRVPVAP 254
>gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A [Bacillus halodurans C-125]
gi|8134764|sp|Q9Z9J0.1|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|4512436|dbj|BAA75303.1| truA [Bacillus halodurans]
gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I)
[Bacillus halodurans C-125]
Length = 263
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 51/251 (20%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ I LK+ Y G ++ G+QIQ ++ T+ L L+ I GRTD+GV
Sbjct: 1 MKRIGLKVAYDGTDFAGYQIQ-PNERTVQGELESVLKN---IHKGMSIRVTASGRTDTGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A Q+V + L+ P + + LN+ LP DI V+ + VP + AR+
Sbjct: 57 HARGQIVHFD--TSLSFPVDR-------WPIALNSQLPADICVLEAADVPADFHARYSAK 107
Query: 118 --------------DCLFRNYKY--WFPQAGLDIDAMHKAAQYLVGTHDFRNLC--KMNV 159
D RNY Y +P LD++AM +AA L+GTHDF + C K V
Sbjct: 108 TKEYRYRVLTSAQADVFRRNYTYHVRYP---LDVEAMQRAAVQLLGTHDFSSFCAAKAEV 164
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ V + + W+ + F+IR GFL++ +R I+ L +G G
Sbjct: 165 EDKVRTIEDV-------ALWR-------EGDELIFSIRGNGFLYNMVRIIVGTLLEIGAG 210
Query: 220 NEKPEIIQQLV 230
E + +++
Sbjct: 211 KRSAEEVAKIL 221
>gi|350532040|ref|ZP_08910981.1| tRNA pseudouridine synthase A [Vibrio rotiferianus DAT722]
Length = 264
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 111/271 (40%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY G+Q Q + + + L+K + C GRTD+GV
Sbjct: 3 IALGIEYNGTNYFGWQRQREVKS-----VQEELEKALSVVANHPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTL--KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
QVV + K+ + + N N+P DI V VP+ + ARF
Sbjct: 58 GQVVHFDTNVSRKMVA-----------WTMGANANMPSDIAVRWAVEVPDDFHARFSATA 106
Query: 122 RNYKYWF----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y+Y LD MH+A QYL+G +DF + + + ++
Sbjct: 107 RRYRYIIFNHALRPGILNSGVSHYHGDLDEKKMHEAGQYLLGENDFSSFRAAHCQS--LS 164
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R + H VT H + +I++ F+ H +R I L VG+G EKPE
Sbjct: 165 PCRNMMHLNVTR----------HGDYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEW 214
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
I+ L +E RK + E L L ++
Sbjct: 215 IKSL--LEAKDRKLAGATAKAEGLYLVDVDY 243
>gi|443625111|ref|ZP_21109562.1| putative Pseudouridine synthase [Streptomyces viridochromogenes
Tue57]
gi|443341374|gb|ELS55565.1| putative Pseudouridine synthase [Streptomyces viridochromogenes
Tue57]
Length = 288
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 95/237 (40%), Gaps = 42/237 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G +HG+ Q T+ + AL +T GRTD+GV A
Sbjct: 12 VRLDLSYDGSEFHGWAKQAGGRRTVQGEIEDAL-RTVTRSGSTTYELTVAGRTDAGVHAR 70
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + + E LK L LP+D++V A P ++ARF ++R
Sbjct: 71 GQVAHVDLPEPVWREHHEK------LLKRLAGRLPKDVRVWALREAPSGFNARFSAVWRR 124
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM++AA+ L+G HDF CK G
Sbjct: 125 YAYRVTDNPGGVDPLLRNHVLWHDWP---LDVDAMNEAARGLLGEHDFAAYCKKR--EGA 179
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R L Q + I +R+ F + +R ++ L VG G+
Sbjct: 180 TTIRTL----------QELSLVRGDDGIITATVRADAFCHNMVRSLIGALLFVGDGH 226
>gi|422707940|ref|ZP_16765474.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
gi|315154834|gb|EFT98850.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043]
Length = 277
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L++ E GRTD+G
Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMT----GEPIEIIGSGRTDAGT 87
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 88 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 138
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 139 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 185
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 186 IGFSALKKTKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 245
Query: 224 EIIQQL 229
II +L
Sbjct: 246 AIIDEL 251
>gi|160881752|ref|YP_001560720.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
gi|160430418|gb|ABX43981.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
Length = 245
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 113/272 (41%), Gaps = 44/272 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + LK+ Y G NY G+Q+Q ++ TI L + L K KE+ RTD+GV
Sbjct: 1 MKRVLLKVAYDGTNYCGWQVQPNA-KTIEGVLNECLTKLL----KEEIVIIGASRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ V S++ P E+ L Y LN +LP DI + A V + R+
Sbjct: 56 HAYGNVAVFDTNSRI--PAEK-----LSY--ALNAHLPEDIVIQASMEVESDFHPRYCDT 106
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y A LD++AM KAA YL+G HDF + C N
Sbjct: 107 RKTYEYRIYNATFPLPTNRRYAHFVYYDLDLEAMRKAASYLIGEHDFVSFCSAN------ 160
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
T ++Q I I+ GFL++ +R I L VG +PE
Sbjct: 161 -----TQVKDTTRTIYDIQIEKERELIV-IRIKGNGFLYNMVRIIAGTLIQVGTHQWEPE 214
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L + K R+ P + L L E+
Sbjct: 215 RV--LEALTKKDRQAAGPTAPAKGLTLVEIEY 244
>gi|422653178|ref|ZP_16715949.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330966232|gb|EGH66492.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 274
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 104/242 (42%), Gaps = 54/242 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVA----ASPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV +++ + ++ N NLP D+ V +W+ V P + ARF + R
Sbjct: 65 GQVVHFDT---------QAERSLKAWVMGANINLPHDVSV-SWARVMPATFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AA+YLVGTHDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + ++R+ FL H +R I VL +G G E
Sbjct: 174 KQLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGAG-E 216
Query: 222 KP 223
+P
Sbjct: 217 RP 218
>gi|430853073|ref|ZP_19470803.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
gi|430540895|gb|ELA81072.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
Length = 247
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + +PE++ +R++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + LVGTHDF
Sbjct: 108 GKKYSYYVWNDVIPSAFERNHSFYFPQE-LDMDKLNAACEKLVGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|256958303|ref|ZP_05562474.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|257078388|ref|ZP_05572749.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|257420509|ref|ZP_05597499.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|294780153|ref|ZP_06745525.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|307268416|ref|ZP_07549794.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|397701171|ref|YP_006538959.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
gi|422708872|ref|ZP_16766392.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|422868413|ref|ZP_16914955.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
gi|256948799|gb|EEU65431.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5]
gi|256986418|gb|EEU73720.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1]
gi|257162333|gb|EEU92293.1| tRNA pseudouridine synthase [Enterococcus faecalis X98]
gi|294452696|gb|EFG21126.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1]
gi|306515223|gb|EFM83760.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248]
gi|315036592|gb|EFT48524.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027]
gi|329575477|gb|EGG57017.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467]
gi|397337810|gb|AFO45482.1| tRNA pseudouridine synthase A [Enterococcus faecalis D32]
Length = 246
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L++ E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 108 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 155 IGFSALKKTKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|254429312|ref|ZP_05043019.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881]
gi|196195481|gb|EDX90440.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881]
Length = 267
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 102/254 (40%), Gaps = 55/254 (21%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M IAL I Y G ++ G+Q Q T+ L AL K + C GRTD+GV
Sbjct: 1 MTRIALGIEYDGTDFRGWQTQQPGVRTVQECLEAALSKVA----NHPVAVVCAGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELP-----YLKMLNNNLPRDIKVVAWSPVPEKYSA 115
QVV D+E P ++ N NLPRD+ V +PV + + A
Sbjct: 57 HGTGQVVHF--------------DSEAPREMKSWIMGANTNLPRDVTVRWATPVDDAFHA 102
Query: 116 RFDCLFRNYKYWF-----PQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNV 159
RF + R Y+Y P A LD+ AM +AA YLVG HDF
Sbjct: 103 RFSAVSRRYRYVIYNHARPPALFRNQVTWNYRPLDVAAMREAAAYLVGEHDF-------- 154
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
+R + H S + + + H + + FL H +R I VL VG
Sbjct: 155 ----TAYRSV--HCQAKSPLKTMHSLELYEHGKVLVLEAHANAFLMHMVRNIAGVLMSVG 208
Query: 218 QGNEKPEIIQQLVD 231
G +++++
Sbjct: 209 AGKRPAHWAREVLE 222
>gi|288801196|ref|ZP_06406651.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 299 str.
F0039]
gi|288331807|gb|EFC70290.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 299 str.
F0039]
Length = 245
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 109/250 (43%), Gaps = 41/250 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT--CLIEDKEKSSFACCGRTDS 58
M+ + Y G NYHG+QIQ + NT+ L KAL C I + GRTD+
Sbjct: 1 MQRYFIYFAYDGTNYHGWQIQPNG-NTVQEELQKALSLILRCNI------NVVGAGRTDT 53
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
GV A V I +++ D EL K LN LP DI V A PV E ARF
Sbjct: 54 GVHARSMVAHFDISTEIVF------DAELLSGK-LNRLLPPDIVVFAIKPVAEDMHARFS 106
Query: 119 CLFRNYKYWFPQA--------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+R Y Y+ + LD M++AA+YL+ DF CK +
Sbjct: 107 ATWRTYHYYVHKGKDPFVRNYSYSYYRDLDFTLMNEAARYLLEVEDFEAFCKSHSDAK-- 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
T VT A Q +Q +D+H F I++ FL + +R ++ L VGQ E
Sbjct: 165 -----TTLCNVTKA-QWIQDDDTH---WHFVIKANRFLRNMVRAVVGTLVEVGQHKITIE 215
Query: 225 IIQQLVDIEK 234
+ +VD K
Sbjct: 216 EFKNIVDQRK 225
>gi|227550954|ref|ZP_03981003.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330]
gi|257893717|ref|ZP_05673370.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|257896582|ref|ZP_05676235.1| tRNA pseudouridine synthase [Enterococcus faecium Com12]
gi|293379717|ref|ZP_06625853.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1]
gi|424765790|ref|ZP_18193161.1| tRNA pseudouridine synthase A [Enterococcus faecium TX1337RF]
gi|430847536|ref|ZP_19465372.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1133]
gi|227179913|gb|EEI60885.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330]
gi|257830096|gb|EEV56703.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|257833147|gb|EEV59568.1| tRNA pseudouridine synthase [Enterococcus faecium Com12]
gi|292641715|gb|EFF59889.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1]
gi|402413342|gb|EJV45686.1| tRNA pseudouridine synthase A [Enterococcus faecium TX1337RF]
gi|430536854|gb|ELA77214.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1133]
Length = 247
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 102/248 (41%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ E S+ + +N LPRDI + +PE++ AR++ +
Sbjct: 57 HARGQVANFKTNTEI----ELSE-----MIDFMNRYLPRDIVIKRIEEMPERFHARYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + L+GTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLMGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|239618279|ref|YP_002941601.1| tRNA pseudouridine synthase ACD [Kosmotoga olearia TBF 19.5.1]
gi|259550401|sp|C5CGS8.1|TRUA_KOSOT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239507110|gb|ACR80597.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1]
Length = 250
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 111/276 (40%), Gaps = 45/276 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ A ++Y G N+ G+QIQ + T+ +AL++ K K GRTD+GV
Sbjct: 1 MKRFAAVVVYDGSNFFGYQIQPNK-RTVQGVFEEALERI----HKAKIPTDGAGRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A+ QV+ +P D LN NLP DI V VP +S RF
Sbjct: 56 HAYGQVIAFTSNLDRLTPKHMKD--------ALNANLPDDIYVRRIHEVPSNFSPRFAAK 107
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
D R Y +WFP +D++ M +A++YL+G HDF
Sbjct: 108 KRIYHYYILNTKEPDLFRRKYFWWFPYE-VDLNRMRQASRYLIGEHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+FR ++ NI + FL +R I+ +L VG G +P
Sbjct: 155 TSFRTGHDDRSTIRTITGIRILRLQKNIILIRVEGISFLRRMVRNIVGLLMRVGTGGIEP 214
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
+ +++++ + P G L L+ FD
Sbjct: 215 KKTKEILEARDRSKLPSSAPAHG--LVLHKVIFDEF 248
>gi|169335662|ref|ZP_02862855.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM
17244]
gi|169258400|gb|EDS72366.1| tRNA pseudouridine synthase A [Anaerofustis stercorihominis DSM
17244]
Length = 244
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 118/266 (44%), Gaps = 42/266 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + I Y G NY G+Q+Q + ++ + A++K KE+ GRTDSGV
Sbjct: 1 MRNILITIEYDGKNYVGWQMQNNGI-SVEEKVKTAIEKLV----KEEVKLYGSGRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q + S +++ ++LPY +N+ LP DI+V+ E + AR+
Sbjct: 56 HALGQAASFYTNSNISA-------DKLPY--GINSFLPEDIRVIKAEEKEEDFHARYSAK 106
Query: 121 FRNYKYWFPQAG----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y LD+D M +A++ L+G HDF M G+ V
Sbjct: 107 GKEYVYLIYNRSIMNPIYKGRASHVFYKLDLDKMKRASKSLIGIHDFAGF--MGSGSDVK 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + +T +++ + I GFL++ +R I++ L +G+G
Sbjct: 165 STVREIYDIDIT----------KDNDLIKIKISGSGFLYNMVRIIVASLIDIGRGRFDEN 214
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLN 250
I+++++ ++ V G LN
Sbjct: 215 RIEEILETKQRSMANVTAPAVGLYLN 240
>gi|293556963|ref|ZP_06675523.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039]
gi|294618124|ref|ZP_06697719.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679]
gi|424980688|ref|ZP_18393465.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV99]
gi|425021816|ref|ZP_18432040.1| tRNA pseudouridine synthase A [Enterococcus faecium C497]
gi|425023201|ref|ZP_18433334.1| tRNA pseudouridine synthase A [Enterococcus faecium C1904]
gi|430823483|ref|ZP_19442054.1| tRNA pseudouridine synthase A [Enterococcus faecium E0120]
gi|430839509|ref|ZP_19457449.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0688]
gi|430858791|ref|ZP_19476414.1| tRNA pseudouridine synthase A [Enterococcus faecium E1552]
gi|430866515|ref|ZP_19481792.1| tRNA pseudouridine synthase A [Enterococcus faecium E1574]
gi|431673659|ref|ZP_19524308.1| tRNA pseudouridine synthase A [Enterococcus faecium E1904]
gi|431744188|ref|ZP_19533060.1| tRNA pseudouridine synthase A [Enterococcus faecium E2071]
gi|431755695|ref|ZP_19544343.1| tRNA pseudouridine synthase A [Enterococcus faecium E2883]
gi|291595614|gb|EFF26912.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679]
gi|291600783|gb|EFF31075.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039]
gi|402965776|gb|EJX82465.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV99]
gi|403005191|gb|EJY18925.1| tRNA pseudouridine synthase A [Enterococcus faecium C497]
gi|403010522|gb|EJY23895.1| tRNA pseudouridine synthase A [Enterococcus faecium C1904]
gi|430442196|gb|ELA52244.1| tRNA pseudouridine synthase A [Enterococcus faecium E0120]
gi|430490657|gb|ELA67170.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0688]
gi|430544842|gb|ELA84851.1| tRNA pseudouridine synthase A [Enterococcus faecium E1552]
gi|430551743|gb|ELA91494.1| tRNA pseudouridine synthase A [Enterococcus faecium E1574]
gi|430599553|gb|ELB37252.1| tRNA pseudouridine synthase A [Enterococcus faecium E1904]
gi|430605816|gb|ELB43198.1| tRNA pseudouridine synthase A [Enterococcus faecium E2071]
gi|430616528|gb|ELB53432.1| tRNA pseudouridine synthase A [Enterococcus faecium E2883]
Length = 247
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + +PE++ +R++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + LVGTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLVGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|50756277|ref|XP_415090.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Gallus
gallus]
Length = 409
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 118/267 (44%), Gaps = 53/267 (19%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKTCLI-----EDKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL ++ I ED +K SF C
Sbjct: 64 RKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRCA 123
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA Q+V+LK+R DD L+ +NN+LP I+++ V ++
Sbjct: 124 RTDKGVSAAGQIVSLKVRL--------IDD----ILEKINNHLPSHIRILGLKRVTGGFN 171
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKA---------------AQYLVGTHDFRNLCK 156
++ C R Y Y P A D D +A A+Y GTH+F N
Sbjct: 172 SKNKCDARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLARY-KGTHNFHNFTS 230
Query: 157 MNVGNGVVNFRRLV--THAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLF 214
G + RR + + G + ++F ++ Q F+ HQIR ++ ++
Sbjct: 231 QK-GPKDPSARRYIMEMYCGEPFVREGIEF-------AVIKVKGQSFMMHQIRKMIGLVI 282
Query: 215 LVGQGNEKPEII-----QQLVDIEKYP 236
+ +G II ++ VD+ K P
Sbjct: 283 AIVKGYAPESIIERSWGEEKVDVPKAP 309
>gi|269866402|ref|XP_002652261.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|220062857|gb|EED41795.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 268
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
+R IALKI Y G YHG Q + + +I L AL+ T L E + CGRTD GV
Sbjct: 57 IRKIALKIAYDGRVYHGVQ-KDPNGLSIGEVLENALKSTDLY--IESNDIVFCGRTDRGV 113
Query: 61 SAFCQVVTLKIRSKLTSPG------------------------------------EESDD 84
SA +++LKI+S L + ++ D
Sbjct: 114 SAANMIISLKIKSILETYSANPNYHRHIETETYDTYQFNKKEYKRYLLNNSDFEIKKHDA 173
Query: 85 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 144
ELPY +LN LP I+V W+PVP +SAR +C R Y Y+F + +A +
Sbjct: 174 KELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTCPPQLLPKYQEAGRI 233
Query: 145 LVGTHDFRNLC 155
+ T DF N C
Sbjct: 234 IYKTEDFYNFC 244
>gi|49083216|gb|AAT50973.1| PA3114, partial [synthetic construct]
Length = 286
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 102/249 (40%), Gaps = 51/249 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y+G Y G+Q Q + ++ L +A K E C GRTD+ V A
Sbjct: 20 IALGIEYKGSRYRGWQRQEAGVPSVQEALERASSKVA----AEPVGVICAGRTDAAVHAS 75
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P + ++ N NLP DI V +P + ARF + R
Sbjct: 76 GQVVHFD--TAVERPLKA-------WVMGTNANLPADISVTWARVMPAHFHARFSAMARR 126
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LDI M +AAQ LVGTHDF + C+
Sbjct: 127 YRYAIYNDPIRPAHLAEEVTWNHRP-LDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVK 185
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ RL+ H + +IR FL H +R I VL +G G
Sbjct: 186 TMHHVRLLEHG----------------RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERP 229
Query: 223 PEIIQQLVD 231
E +++++
Sbjct: 230 IEWAKEVLE 238
>gi|403237135|ref|ZP_10915721.1| tRNA pseudouridine synthase A [Bacillus sp. 10403023]
Length = 245
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 96/235 (40%), Gaps = 41/235 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M L I Y G Y G+Q + DNTI + L + EK GRTD+GV
Sbjct: 1 MNNYKLTIQYDGGRYKGWQRLGNGDNTIQGKIENVLTELA----GEKIEIIGSGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q+ K+R + NE + LN LP DI VV + V +++ AR++
Sbjct: 57 HALAQIANFKMRK---------NANEDEVMHYLNRYLPNDISVVDVTLVHDRFHARYNAK 107
Query: 121 FRNYKY--WFPQ--------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y W Q LDI+ M KA+ Y +G HDF + N
Sbjct: 108 DKTYLYKIWNEQYTHPFMRKYSMHVEEKLDIEKMRKASHYFLGKHDFTSYS-----NAKS 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ +V +N F E +R GFL++ +R I+ L VG G
Sbjct: 163 KKKSMVREIYSLEINKNEGF-------IEIKVRGNGFLYNMVRKIVGTLIEVGLG 210
>gi|402701693|ref|ZP_10849672.1| tRNA pseudouridine synthase A [Pseudomonas fragi A22]
Length = 274
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYSGWQRQASGVLTVQETLENALSKVA----ASPVSLLCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV ++ + ++ N NLP DI V+W+ V P + ARF + R
Sbjct: 65 GQVVHFDTMAERSLKA---------WVMGANINLPHDIS-VSWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD++ M +AA+YL+G HDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNQEITWNHRP-LDVERMAEAARYLLGVHDFSAFRAGQCQAKSPV 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
++ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KEMHHLRVTRHG----------------QMIVLDIRASAFLHHMVRNIAGVLMTIGTGER 217
Query: 222 KPEIIQQLVD 231
E ++++++
Sbjct: 218 PVEWMKEVLE 227
>gi|385802497|ref|YP_005838897.1| tRNA-pseudouridine synthase A [Haloquadratum walsbyi C23]
gi|339727989|emb|CCC39107.1| tRNA pseudouridine synthase TruA [Haloquadratum walsbyi C23]
Length = 272
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIE---DKEKSSFACCGRTDSGVS 61
A ++ Y G + GFQ Q S T+ L AL + D + S +A GRTD+GVS
Sbjct: 3 AFRLAYDGRPFSGFQRQPSVP-TVEDSLFDALDSLDVFNRDTDSKPSGYAAAGRTDAGVS 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A Q V + S T + LN+ LP ++ A + V + A D L
Sbjct: 62 ALRQTVGFECPSWCTP-------------RALNSELPTSVRAWASADVQSGFHATHDALQ 108
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y Y+ LD++ ++ AA+ L G HDF N + G R+L
Sbjct: 109 RTYTYYLYGPELDMNRLNTAAEILSGKHDFHNFTSDDDGTT----RKLSI---------T 155
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
++F+D I + GF IR +MS L VG + E + L++
Sbjct: 156 LEFDDP---FITARITADGFPRSLIRRLMSALRGVGSESMTIETLTGLLNTVPQTGPDGI 212
Query: 242 PMVRGEPLNLYHTEFDNLTWHYD 264
P EPL L + + T+ D
Sbjct: 213 PTASPEPLILTRVTYPDATFRID 235
>gi|332798239|ref|YP_004459738.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|332695974|gb|AEE90431.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 243
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 111/246 (45%), Gaps = 50/246 (20%)
Query: 6 LKIL--YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+KIL Y+G Y G+Q Q + A + + L+ E + GRTD+GV A
Sbjct: 3 VKILLEYEGTAYSGWQRQKN-----AISIQEVLENAIKSITGEAVNVIGSGRTDAGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF------ 117
QV K ++K+ P E+ LPY +N+ LP DI V VPE + ARF
Sbjct: 58 GQVANFKTQTKI--PIEK-----LPY--AINSKLPEDIVVKHAEIVPEDFHARFWAKAKI 108
Query: 118 -----------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGVV 164
L + Y Y++P+ L++ AM KAA L+GTHDF + N V + V
Sbjct: 109 YTYTIYNAKFPSPLLKRYSYFYPRP-LNVRAMKKAADMLIGTHDFASFMASNSPVKSTVR 167
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
RL +QN +I +F I + GFL++ +R I L VG +K
Sbjct: 168 CIERL-------EVFQN-------GDIVKFEIEANGFLYNMVRIIAGTLLDVGINKKKAN 213
Query: 225 IIQQLV 230
I ++
Sbjct: 214 DIISII 219
>gi|69244266|ref|ZP_00602734.1| tRNA pseudouridine synthase [Enterococcus faecium DO]
gi|257878927|ref|ZP_05658580.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257881556|ref|ZP_05661209.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257890781|ref|ZP_05670434.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|261206813|ref|ZP_05921504.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6]
gi|289567364|ref|ZP_06447735.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF]
gi|293563155|ref|ZP_06677615.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162]
gi|293568529|ref|ZP_06679849.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071]
gi|294614075|ref|ZP_06694002.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636]
gi|294620867|ref|ZP_06700069.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317]
gi|314939024|ref|ZP_07846289.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04]
gi|314943424|ref|ZP_07850191.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C]
gi|314948177|ref|ZP_07851572.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082]
gi|314952740|ref|ZP_07855717.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A]
gi|314991371|ref|ZP_07856849.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B]
gi|314995418|ref|ZP_07860520.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01]
gi|383327635|ref|YP_005353519.1| tRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|389867502|ref|YP_006374925.1| tRNA-pseudouridine synthase [Enterococcus faecium DO]
gi|406579371|ref|ZP_11054603.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD4E]
gi|406581511|ref|ZP_11056648.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD3E]
gi|406583950|ref|ZP_11058988.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD2E]
gi|406589038|ref|ZP_11063491.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD1E]
gi|410938151|ref|ZP_11370008.1| tRNA-pseudouridine synthase [Enterococcus sp. GMD5E]
gi|415900021|ref|ZP_11551762.1| tRNA pseudouridine synthase A [Enterococcus faecium E4453]
gi|416142099|ref|ZP_11599531.1| tRNA pseudouridine synthase A [Enterococcus faecium E4452]
gi|424789076|ref|ZP_18215789.1| tRNA pseudouridine synthase A [Enterococcus faecium V689]
gi|424796295|ref|ZP_18222046.1| tRNA pseudouridine synthase A [Enterococcus faecium S447]
gi|424834569|ref|ZP_18259272.1| tRNA pseudouridine synthase A [Enterococcus faecium R501]
gi|424945198|ref|ZP_18360913.1| tRNA pseudouridine synthase A [Enterococcus faecium R496]
gi|424952901|ref|ZP_18367899.1| tRNA pseudouridine synthase A [Enterococcus faecium R494]
gi|424956812|ref|ZP_18371573.1| tRNA pseudouridine synthase A [Enterococcus faecium R446]
gi|424960713|ref|ZP_18375208.1| tRNA pseudouridine synthase A [Enterococcus faecium P1986]
gi|424966209|ref|ZP_18380020.1| tRNA pseudouridine synthase A [Enterococcus faecium P1140]
gi|424983697|ref|ZP_18396273.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV69]
gi|424988098|ref|ZP_18400437.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV38]
gi|424991875|ref|ZP_18404000.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV26]
gi|424996232|ref|ZP_18408047.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV168]
gi|424997714|ref|ZP_18409459.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV165]
gi|425000552|ref|ZP_18412109.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV161]
gi|425005802|ref|ZP_18417014.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV102]
gi|425007116|ref|ZP_18418266.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV1]
gi|425012559|ref|ZP_18423365.1| tRNA pseudouridine synthase A [Enterococcus faecium E422]
gi|425018625|ref|ZP_18429050.1| tRNA pseudouridine synthase A [Enterococcus faecium C621]
gi|425031549|ref|ZP_18436672.1| tRNA pseudouridine synthase A [Enterococcus faecium 515]
gi|425033961|ref|ZP_18438883.1| tRNA pseudouridine synthase A [Enterococcus faecium 514]
gi|425039002|ref|ZP_18443575.1| tRNA pseudouridine synthase A [Enterococcus faecium 513]
gi|425043714|ref|ZP_18447927.1| tRNA pseudouridine synthase A [Enterococcus faecium 511]
gi|425044557|ref|ZP_18448709.1| tRNA pseudouridine synthase A [Enterococcus faecium 510]
gi|425048116|ref|ZP_18452039.1| tRNA pseudouridine synthase A [Enterococcus faecium 509]
gi|427397143|ref|ZP_18889769.1| tRNA pseudouridine synthase A [Enterococcus durans FB129-CNAB-4]
gi|430821064|ref|ZP_19439679.1| tRNA pseudouridine synthase A [Enterococcus faecium E0045]
gi|430828995|ref|ZP_19447100.1| tRNA pseudouridine synthase A [Enterococcus faecium E0269]
gi|430832029|ref|ZP_19450077.1| tRNA pseudouridine synthase A [Enterococcus faecium E0333]
gi|430843260|ref|ZP_19461161.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1050]
gi|430855542|ref|ZP_19473250.1| tRNA pseudouridine synthase A [Enterococcus faecium E1392]
gi|430861521|ref|ZP_19479028.1| tRNA pseudouridine synthase A [Enterococcus faecium E1573]
gi|430954830|ref|ZP_19486534.1| tRNA pseudouridine synthase A [Enterococcus faecium E1576]
gi|431000850|ref|ZP_19488331.1| tRNA pseudouridine synthase A [Enterococcus faecium E1578]
gi|431162015|ref|ZP_19499784.1| tRNA pseudouridine synthase A [Enterococcus faecium E1620]
gi|431234051|ref|ZP_19502820.1| tRNA pseudouridine synthase A [Enterococcus faecium E1622]
gi|431256586|ref|ZP_19504941.1| tRNA pseudouridine synthase A [Enterococcus faecium E1623]
gi|431303336|ref|ZP_19508183.1| tRNA pseudouridine synthase A [Enterococcus faecium E1626]
gi|431379051|ref|ZP_19510670.1| tRNA pseudouridine synthase A [Enterococcus faecium E1627]
gi|431441208|ref|ZP_19513423.1| tRNA pseudouridine synthase A [Enterococcus faecium E1630]
gi|431542844|ref|ZP_19518506.1| tRNA pseudouridine synthase A [Enterococcus faecium E1731]
gi|431747030|ref|ZP_19535837.1| tRNA pseudouridine synthase A [Enterococcus faecium E2134]
gi|431748330|ref|ZP_19537092.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2297]
gi|431752807|ref|ZP_19541487.1| tRNA pseudouridine synthase A [Enterococcus faecium E2620]
gi|431760297|ref|ZP_19548899.1| tRNA pseudouridine synthase A [Enterococcus faecium E3346]
gi|431769244|ref|ZP_19557667.1| tRNA pseudouridine synthase A [Enterococcus faecium E1321]
gi|431776577|ref|ZP_19564838.1| tRNA pseudouridine synthase A [Enterococcus faecium E2560]
gi|431780482|ref|ZP_19568658.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E4389]
gi|431782691|ref|ZP_19570823.1| tRNA pseudouridine synthase A [Enterococcus faecium E6012]
gi|431784518|ref|ZP_19572556.1| tRNA pseudouridine synthase A [Enterococcus faecium E6045]
gi|68196452|gb|EAN10879.1| tRNA pseudouridine synthase [Enterococcus faecium DO]
gi|257813155|gb|EEV41913.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257817214|gb|EEV44542.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257827141|gb|EEV53767.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|260078943|gb|EEW66643.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6]
gi|289160842|gb|EFD08771.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF]
gi|291588865|gb|EFF20693.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071]
gi|291593065|gb|EFF24647.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636]
gi|291599569|gb|EFF30584.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317]
gi|291604885|gb|EFF34359.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162]
gi|313590351|gb|EFR69196.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01]
gi|313594045|gb|EFR72890.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B]
gi|313595146|gb|EFR73991.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A]
gi|313597796|gb|EFR76641.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C]
gi|313641733|gb|EFS06313.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04]
gi|313645389|gb|EFS09969.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082]
gi|364088998|gb|EHM31722.1| tRNA pseudouridine synthase A [Enterococcus faecium E4453]
gi|364089776|gb|EHM32429.1| tRNA pseudouridine synthase A [Enterococcus faecium E4452]
gi|378937329|gb|AFC62401.1| tRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|388532751|gb|AFK57943.1| tRNA-pseudouridine synthase [Enterococcus faecium DO]
gi|402922315|gb|EJX42711.1| tRNA pseudouridine synthase A [Enterococcus faecium R501]
gi|402922651|gb|EJX43011.1| tRNA pseudouridine synthase A [Enterococcus faecium V689]
gi|402923210|gb|EJX43526.1| tRNA pseudouridine synthase A [Enterococcus faecium S447]
gi|402935617|gb|EJX54855.1| tRNA pseudouridine synthase A [Enterococcus faecium R496]
gi|402940340|gb|EJX59174.1| tRNA pseudouridine synthase A [Enterococcus faecium R494]
gi|402945002|gb|EJX63379.1| tRNA pseudouridine synthase A [Enterococcus faecium R446]
gi|402946731|gb|EJX64986.1| tRNA pseudouridine synthase A [Enterococcus faecium P1986]
gi|402956994|gb|EJX74415.1| tRNA pseudouridine synthase A [Enterococcus faecium P1140]
gi|402971002|gb|EJX87309.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV69]
gi|402972984|gb|EJX89143.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV38]
gi|402974253|gb|EJX90316.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV168]
gi|402975543|gb|EJX91490.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV26]
gi|402984992|gb|EJY00246.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV102]
gi|402985602|gb|EJY00798.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV165]
gi|402988932|gb|EJY03900.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV161]
gi|402992737|gb|EJY07409.1| tRNA pseudouridine synthase A [Enterococcus faecium E422]
gi|402995781|gb|EJY10212.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV1]
gi|403001165|gb|EJY15236.1| tRNA pseudouridine synthase A [Enterococcus faecium C621]
gi|403015399|gb|EJY28304.1| tRNA pseudouridine synthase A [Enterococcus faecium 515]
gi|403017719|gb|EJY30444.1| tRNA pseudouridine synthase A [Enterococcus faecium 513]
gi|403018256|gb|EJY30951.1| tRNA pseudouridine synthase A [Enterococcus faecium 511]
gi|403021704|gb|EJY34136.1| tRNA pseudouridine synthase A [Enterococcus faecium 514]
gi|403029567|gb|EJY41316.1| tRNA pseudouridine synthase A [Enterococcus faecium 510]
gi|403031486|gb|EJY43088.1| tRNA pseudouridine synthase A [Enterococcus faecium 509]
gi|404455676|gb|EKA02520.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD4E]
gi|404459277|gb|EKA05643.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD3E]
gi|404464847|gb|EKA10360.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD2E]
gi|404471519|gb|EKA16035.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD1E]
gi|410733438|gb|EKQ75362.1| tRNA-pseudouridine synthase [Enterococcus sp. GMD5E]
gi|425722469|gb|EKU85364.1| tRNA pseudouridine synthase A [Enterococcus durans FB129-CNAB-4]
gi|430438924|gb|ELA49322.1| tRNA pseudouridine synthase A [Enterococcus faecium E0045]
gi|430480670|gb|ELA57844.1| tRNA pseudouridine synthase A [Enterococcus faecium E0333]
gi|430482158|gb|ELA59290.1| tRNA pseudouridine synthase A [Enterococcus faecium E0269]
gi|430498009|gb|ELA74026.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1050]
gi|430546597|gb|ELA86540.1| tRNA pseudouridine synthase A [Enterococcus faecium E1392]
gi|430549986|gb|ELA89796.1| tRNA pseudouridine synthase A [Enterococcus faecium E1573]
gi|430557083|gb|ELA96560.1| tRNA pseudouridine synthase A [Enterococcus faecium E1576]
gi|430562509|gb|ELB01741.1| tRNA pseudouridine synthase A [Enterococcus faecium E1578]
gi|430573077|gb|ELB11907.1| tRNA pseudouridine synthase A [Enterococcus faecium E1622]
gi|430574481|gb|ELB13253.1| tRNA pseudouridine synthase A [Enterococcus faecium E1620]
gi|430577688|gb|ELB16275.1| tRNA pseudouridine synthase A [Enterococcus faecium E1623]
gi|430579977|gb|ELB18457.1| tRNA pseudouridine synthase A [Enterococcus faecium E1626]
gi|430582467|gb|ELB20890.1| tRNA pseudouridine synthase A [Enterococcus faecium E1627]
gi|430586564|gb|ELB24816.1| tRNA pseudouridine synthase A [Enterococcus faecium E1630]
gi|430592767|gb|ELB30772.1| tRNA pseudouridine synthase A [Enterococcus faecium E1731]
gi|430607540|gb|ELB44854.1| tRNA pseudouridine synthase A [Enterococcus faecium E2134]
gi|430613266|gb|ELB50283.1| tRNA pseudouridine synthase A [Enterococcus faecium E2620]
gi|430614383|gb|ELB51371.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2297]
gi|430624106|gb|ELB60757.1| tRNA pseudouridine synthase A [Enterococcus faecium E3346]
gi|430627721|gb|ELB64199.1| tRNA pseudouridine synthase A [Enterococcus faecium E1321]
gi|430639652|gb|ELB75521.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E4389]
gi|430640896|gb|ELB76724.1| tRNA pseudouridine synthase A [Enterococcus faecium E2560]
gi|430646993|gb|ELB82452.1| tRNA pseudouridine synthase A [Enterococcus faecium E6012]
gi|430649360|gb|ELB84742.1| tRNA pseudouridine synthase A [Enterococcus faecium E6045]
Length = 246
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + +PE++ +R++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + LVGTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLVGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|410092591|ref|ZP_11289113.1| tRNA pseudouridine synthase A [Pseudomonas viridiflava UASWS0038]
gi|409760020|gb|EKN45188.1| tRNA pseudouridine synthase A [Pseudomonas viridiflava UASWS0038]
Length = 274
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 101/241 (41%), Gaps = 52/241 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S T+ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV +++ + ++ N NLP DI V +P ++ ARF + R
Sbjct: 65 GQVVHFDT---------QAERSMKAWVMGANINLPHDISVTWARVMPAEFHARFKAIARR 115
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y W + LD+ M +AAQ+LVGTHDF C+
Sbjct: 116 YRYVIYNDQIRPAHLGQEITWNHRP-LDVTRMAEAAQHLVGTHDFSAFRAGQCQAKSPIK 174
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++ R+ H + ++R+ FL H +R I VL +G G E+
Sbjct: 175 QLHHLRVTRHG----------------KMIVIDVRANAFLHHMVRNIAGVLMTIGAG-ER 217
Query: 223 P 223
P
Sbjct: 218 P 218
>gi|447911784|ref|YP_007393196.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
gi|445187493|gb|AGE29135.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
Length = 246
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + +PE++ +R++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + LVGTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLVGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|390456349|ref|ZP_10241877.1| tRNA pseudouridine synthase a [Paenibacillus peoriae KCTC 3763]
Length = 261
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 112/273 (41%), Gaps = 34/273 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + +K+ Y G Y GFQ Q + NTI +L A+ C + E+ GRTD+GV
Sbjct: 1 MRNLCMKVNYDGTEYDGFQTQPNG-NTIQDYLESAI---CSLTG-ERLKITGSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ QV S + P E + LN LPRDI V VP + AR
Sbjct: 56 HAYGQVFNFHTESPI--PIER-------WCLALNAWLPRDIIVTEAKEVPLSFHARRMAK 106
Query: 121 FRNYKY-----WFPQ-----------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y FP LD+ AM + +LVG D+ + +
Sbjct: 107 RKTYRYSINANRFPDIFHRRTQAHHPTKLDVQAMEQGLAHLVGIFDYTSFASRR--SQKT 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
N R + A +T + I I GFL H +R IM L VG+G + +
Sbjct: 165 NHVRTIYEAYMTVDHSFSRPGSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSAD 224
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
I +++ + R P G L L+ E++
Sbjct: 225 DIPFILEAKN--RSKAGPTAVGHALTLWSVEYE 255
>gi|238927931|ref|ZP_04659691.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531]
gi|238884264|gb|EEQ47902.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531]
Length = 256
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 101/245 (41%), Gaps = 43/245 (17%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IAL I Y G NYHGFQ QT + + L AL K C E A GRTD+GV
Sbjct: 7 RNIALTIAYDGTNYHGFQRQTPPVLAVQNVLEGALAKIC----GEMVELAAAGRTDAGVH 62
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVV-AWSPVPEKYSARFDCL 120
A+ QVV ++ + LP + +N LP DI V AW P ++SAR
Sbjct: 63 AYGQVVNFFTDGRIPT-------EHLP--RAVNGLLPPDIVVSQAWE-APREFSARHSAT 112
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y W LD +AMH L GTHD+ + + G +
Sbjct: 113 GKAYVYRIEECRVPNPFTRNYAWQVFQPLDHEAMHAVLLLLKGTHDYSSF-RAAGGAPMS 171
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R L ++ + + + + GFL+H +R I+S VG G P
Sbjct: 172 PVRTL----------DEIRLTEEEGRLSIY-VHGTGFLYHMVRNIVSTAAAVGMGRISPS 220
Query: 225 IIQQL 229
++
Sbjct: 221 RFAEI 225
>gi|221632949|ref|YP_002522172.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159]
gi|221155520|gb|ACM04647.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159]
Length = 279
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 38/247 (15%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L Y+G + G Q Q T+ L +AL + E A GRTD+GV A Q
Sbjct: 8 LDFGYEGTAFSGSQRQPGL-RTVQGVLEEALARLA----GEPVRVALAGRTDAGVHAVGQ 62
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V + + + +E + L LP D+ V + +P + AR + R Y+
Sbjct: 63 VASFDLCWR---------HDEATLARALQAWLPEDVVVYRVARMPAGFHARRGAVDREYR 113
Query: 126 Y----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
Y W LD+ AM +AAQ+ +G+HDFR+ +G R+
Sbjct: 114 YRIWQGEQPPLFLRRFVWRFAGLLDLRAMQEAAQFFLGSHDFRSFAGHGLGGPKATTPRV 173
Query: 170 VTHAGVTSA-WQ----NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
T +T A W V+ + I EF +R+ GFL +R ++S L VG G +P
Sbjct: 174 RT---ITMAEWHLLSPVVEPVGTGAQIVEFRVRANGFLPQMVRTMVSALVRVGTGAAEPS 230
Query: 225 IIQQLVD 231
I +L++
Sbjct: 231 WISELLE 237
>gi|407797922|ref|ZP_11144837.1| tRNA pseudouridine synthase A [Salimicrobium sp. MJ3]
gi|407017685|gb|EKE30442.1| tRNA pseudouridine synthase A [Salimicrobium sp. MJ3]
Length = 246
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 104/245 (42%), Gaps = 46/245 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ + + Y G Y GFQIQ + T+ L KAL+ + E GRTD+GV
Sbjct: 1 MKRVKCTVEYDGTGYSGFQIQPNG-KTVQEELEKALR---TMHKGEHVRIIASGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV + L P E +++ L LP DI V V E + A+FD
Sbjct: 57 HAKGQV--FHFDTSLAVP-------ENRWVRALETLLPSDIYVKQAEYVEESFHAQFDVK 107
Query: 121 FRNYKYWFPQA----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNV---GN 161
+ Y+Y+ LDI+ M +A + +GTHDF C GN
Sbjct: 108 EKEYRYYVRPVRSRDVFRRRTVYHHPRNLDIEKMQEAVKQFLGTHDFTAFCSAKTTLKGN 167
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ R V+ A + + + EF +R GFL++ +R +M L +G+G +
Sbjct: 168 KI----RTVSRAELNVTGEEL----------EFIVRGNGFLYNMVRIMMGTLLEIGEGKK 213
Query: 222 KPEII 226
+ + I
Sbjct: 214 EIDTI 218
>gi|257888836|ref|ZP_05668489.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|431036656|ref|ZP_19492426.1| tRNA pseudouridine synthase A [Enterococcus faecium E1590]
gi|431757700|ref|ZP_19546329.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E3083]
gi|431762976|ref|ZP_19551529.1| tRNA pseudouridine synthase A [Enterococcus faecium E3548]
gi|257824892|gb|EEV51822.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|430563196|gb|ELB02427.1| tRNA pseudouridine synthase A [Enterococcus faecium E1590]
gi|430618205|gb|ELB55052.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E3083]
gi|430622670|gb|ELB59380.1| tRNA pseudouridine synthase A [Enterococcus faecium E3548]
Length = 246
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 102/248 (41%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ E S+ + +N LPRDI + +PE++ AR++ +
Sbjct: 57 HARGQVANFKTNTEI----ELSE-----MIDFMNRYLPRDIVIKRIEEMPERFHARYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + L+GTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLMGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|256962868|ref|ZP_05567039.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|307274272|ref|ZP_07555473.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
gi|256953364|gb|EEU69996.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704]
gi|306509045|gb|EFM78114.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855]
Length = 246
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 101/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 108 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMERACQKLIGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 155 IGFSALKKTKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|298705212|emb|CBJ28643.1| pseudouridylate synthase 3 [Ectocarpus siliculosus]
Length = 472
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%)
Query: 85 NELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQY 144
E+ Y +LN LP ++ +AW+PV E +SARF C R Y+Y+F +D+ AM++AA
Sbjct: 370 TEIDYCGILNRVLPPGVRTLAWAPVTEGFSARFSCSDRTYRYFFMARDMDVKAMNEAASK 429
Query: 145 LVGTHDFRNLCKMNV 159
+VG+HDFRNLCK+
Sbjct: 430 IVGSHDFRNLCKIGT 444
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 2 RPIALKILYQGFNYHGFQIQT-SSDNTIAHHLLKALQKTCLIED-KEKSSFACCGRTDSG 59
R +A++++Y+G Y GF Q+ ++ TI HL +AL T L+E +++ CGRTD G
Sbjct: 105 RTVAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRG 164
Query: 60 VSAFCQVVTLKIRSKL 75
VSA V+T+ +RSK
Sbjct: 165 VSALGNVITVSMRSKF 180
>gi|119718091|ref|YP_925056.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614]
gi|119538752|gb|ABL83369.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614]
Length = 268
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 109/271 (40%), Gaps = 44/271 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G ++HG+ Q T+ L AL + + + C GRTD+GV A
Sbjct: 3 IRLDLAYDGTDFHGWASQPGL-RTVQGELSDALATVLRVPE---VAVVCAGRTDAGVHAR 58
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + G E E ++ LN LP D++V P + ARF L+R
Sbjct: 59 GQVVHADL------DGLEPATVE-GLVRRLNGRLPADVRVRRAVEAPAGFDARFGALWRR 111
Query: 124 YKY------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
Y Y +P+A LD+DAM+ A+ +LVG HDF + CK G
Sbjct: 112 YAYRIADTPAVVDPLTRSHVLAWPRA-LDLDAMNAASAFLVGRHDFASFCKQR--EGATT 168
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R L+ + + + +R+ F +R ++ L VG+ +
Sbjct: 169 IRTLL----------ELSWARDPAGVLVGTVRADAFCHSMVRSLVGCLIAVGEARKPVAW 218
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ ++ E R P +V L L +
Sbjct: 219 AEDILRAEA--RDPAVAVVHAHGLTLEEVAY 247
>gi|425056473|ref|ZP_18459926.1| tRNA pseudouridine synthase A [Enterococcus faecium 505]
gi|403031831|gb|EJY43420.1| tRNA pseudouridine synthase A [Enterococcus faecium 505]
Length = 247
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + +PE++ AR++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHARYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + L+GTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLMGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|402570866|ref|YP_006620209.1| pseudouridylate synthase I [Desulfosporosinus meridiei DSM 13257]
gi|402252063|gb|AFQ42338.1| pseudouridylate synthase I [Desulfosporosinus meridiei DSM 13257]
Length = 260
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 116/275 (42%), Gaps = 43/275 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L++ Y G +YHGFQ Q + L+++ + +E+ + A GRTD+GV
Sbjct: 1 MRNIRLRLAYDGTHYHGFQRQDKAYGPTIQGTLESVWAKLV---EEEVTLAMAGRTDAGV 57
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF--- 117
A QVV +++ + ++P K N+ LP+DI+V+ V + +++R+
Sbjct: 58 HASGQVVNYSTSARIP-------EEKIP--KAFNSLLPKDIRVLEAECVADDFNSRWSAR 108
Query: 118 --------------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
D R Y Y P L+ D M +AA YL G H+F+ G
Sbjct: 109 WKRYDYLIDNKPIPDTFQRLYAYHVPLP-LNTDHMQQAAIYLEGCHNFKTFAA--AGGDS 165
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
F R + V+ + GFL+H +R I+ L VG+G P
Sbjct: 166 KRFERTIYRCKVSR---------EDKGMIRVTCIGDGFLYHMVRIIVGTLVDVGRGRILP 216
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDN 258
I ++ ++ R + G L L H + N
Sbjct: 217 GEIPDIIASQERRRARMVAPAHG--LTLVHVNYTN 249
>gi|225026395|ref|ZP_03715587.1| hypothetical protein EUBHAL_00644 [Eubacterium hallii DSM 3353]
gi|224956284|gb|EEG37493.1| tRNA pseudouridine synthase A [Eubacterium hallii DSM 3353]
Length = 256
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 108/250 (43%), Gaps = 40/250 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ L + Y G NY G+QIQ + T+ L K L + KE+ RTDSGV
Sbjct: 4 MKRFKLVVAYDGTNYCGWQIQPNGI-TVEEVLNKTLSRFL----KEEIHIIGASRTDSGV 58
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+F V S+ T P E+ LN LP DI++V+ VP + R+
Sbjct: 59 HSFGNVAVFD--SETTIPPEK-------LCFALNPQLPEDIRIVSSEQVPGDFHPRYCDT 109
Query: 121 FRNYKY-------------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ Y+Y FP L+I AM +A+QYLVGTHDF++ C
Sbjct: 110 RKTYEYHIQNGKIPLPTERLYSHLVIFP---LNIQAMQEASQYLVGTHDFKSFCAAKTQA 166
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
R VT G+ + + + +GFL++ +R I L VG G
Sbjct: 167 QTT--VRTVT--GIEVEAHPLSEGEYPSKKVIIRVTGEGFLYNMVRIISGTLIKVGLGVY 222
Query: 222 KPEIIQQLVD 231
PE ++Q+++
Sbjct: 223 PPEHVKQILE 232
>gi|328951248|ref|YP_004368583.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM
14884]
gi|328451572|gb|AEB12473.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM
14884]
Length = 249
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 97/247 (39%), Gaps = 45/247 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G + GFQ Q + T+ L AL + K GRTD+GV
Sbjct: 1 MRRIKLTLEYDGTRFAGFQRQAKGERTVQAELESALAQIPGAVPK----VVAAGRTDAGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A VV ++ ++PY LN LP D++ +A P + AR+ C
Sbjct: 57 HALGMVVHYDTEDRIPP-------EKIPY--ALNRLLPPDVRALAAEAAPPGFHARYSCH 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+R Y+Y W P+ LD +AM + + +G HDF+
Sbjct: 108 WRRYRYRILNRQMPSALARERTWWVPKP-LDANAMQQGLAHFLGEHDFKAFATQE----- 161
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
RR G + I ++ GFL Q+R ++ L VG G P
Sbjct: 162 ---RR-----GTVRTLYRARLERCGEEIV-IDLVGNGFLRGQVRAMVGTLVEVGLGKRDP 212
Query: 224 EIIQQLV 230
++I L+
Sbjct: 213 DVIAWLL 219
>gi|410930966|ref|XP_003978868.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Takifugu rubripes]
Length = 390
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 112/266 (42%), Gaps = 49/266 (18%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLI-----EDKEKSSFACCG 54
+ +AL + Y G Y+G Q S TI L+ AL K+ I +D +K SF C
Sbjct: 44 KKVALLMAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPQNHGDDMKKMSFQRCA 103
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD + +N +LP I+++ V + ++
Sbjct: 104 RTDKGVSAAGQVVSLKLLL--------IDD----LTEKINEHLPPQIRILGVKRVTQGFN 151
Query: 115 ARFDCLFRNYKYWFPQAGL---DIDAMHKAAQYLV----------------GTHDFRNLC 155
++ +C R Y Y P D DA A + + GTH+F N
Sbjct: 152 SKNNCDARTYAYMLPTVAFSPKDFDAAGTAPSFRLQPETLQRVNHLFAHYKGTHNFHNFT 211
Query: 156 KMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFL 215
N + RR +TH F +R Q F+ HQIR ++ ++
Sbjct: 212 SQKAPND-PSARRYITHMLCGEP-----FIRGDTEFAVITVRGQSFMLHQIRKMIGLVIA 265
Query: 216 VGQGNEKPEIIQ-----QLVDIEKYP 236
V +G E+++ Q VD+ K P
Sbjct: 266 VIKGYAGEEVMERSWGLQKVDVPKAP 291
>gi|392538790|ref|ZP_10285927.1| tRNA pseudouridine synthase A [Pseudoalteromonas marina mano4]
Length = 264
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 105/252 (41%), Gaps = 52/252 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y G+Q Q S N++ + KAL C C GRTD+GV
Sbjct: 3 VALGVEYNGARYSGWQRQ-SHVNSVQQEVEKALSSIC----NHPVEIVCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKM-LNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QVV E + E+ M +N LP+DI + PV E + ARF R
Sbjct: 58 GQVVHF----------ETNASREMVAFTMGMNTLLPKDIAIRFAQPVAEDFHARFSATAR 107
Query: 123 NYKYW---FPQAG-------------LDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y +P G LD M +A Q+L+G HDF + C+ N
Sbjct: 108 RYRYVIYNYPYRGAVMNEGVTHFHHKLDEKVMQEACQHLIGEHDFTSFRALHCQANTA-- 165
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+R + H V V +I++ FL H +R I L +G +
Sbjct: 166 ----KRTIHHLSVQRQGDYVV----------IDIKANAFLHHMVRNITGCLMDIGLHKHQ 211
Query: 223 PEIIQQLVDIEK 234
P +++L+D+++
Sbjct: 212 PIWLKELLDVKE 223
>gi|403212791|emb|CAJ51238.2| tRNA pseudouridine synthase TruA [Haloquadratum walsbyi DSM 16790]
Length = 272
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIE---DKEKSSFACCGRTDSGVS 61
A ++ Y G + GFQ Q S T+ L AL + D + S +A GRTD+GVS
Sbjct: 3 AFRLAYDGRPFSGFQRQPSVP-TVEDALFDALDSLDVFNRDTDSKPSGYAAAGRTDAGVS 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A Q V + S T + LN+ LP ++ A + V + A D L
Sbjct: 62 ALRQTVGFECPSWCTP-------------RALNSELPTSVRAWASADVQSGFHATHDALQ 108
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y Y+ LD++ ++ AA+ L G HDF N + G R+L
Sbjct: 109 RTYTYYLYGPELDMNRLNTAAEILSGKHDFHNFTSDDDGTT----RKLSI---------T 155
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
++F+D I + GF IR +MS L VG + E + L++
Sbjct: 156 LEFDDP---FITARITADGFPRSLIRRLMSALRGVGSESMTIETLTGLLNTVPQTGPDGI 212
Query: 242 PMVRGEPLNLYHTEFDNLTWHYD 264
P EPL L + + T+ D
Sbjct: 213 PTASPEPLILTRVTYPDATFRID 235
>gi|110667083|ref|YP_656894.1| tRNA pseudouridine synthase A [Haloquadratum walsbyi DSM 16790]
Length = 276
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIE---DKEKSSFACCGRTDSGVS 61
A ++ Y G + GFQ Q S T+ L AL + D + S +A GRTD+GVS
Sbjct: 7 AFRLAYDGRPFSGFQRQPSVP-TVEDALFDALDSLDVFNRDTDSKPSGYAAAGRTDAGVS 65
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A Q V + S T + LN+ LP ++ A + V + A D L
Sbjct: 66 ALRQTVGFECPSWCTP-------------RALNSELPTSVRAWASADVQSGFHATHDALQ 112
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQN 181
R Y Y+ LD++ ++ AA+ L G HDF N + G R+L
Sbjct: 113 RTYTYYLYGPELDMNRLNTAAEILSGKHDFHNFTSDDDGTT----RKLSI---------T 159
Query: 182 VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVY 241
++F+D I + GF IR +MS L VG + E + L++
Sbjct: 160 LEFDDP---FITARITADGFPRSLIRRLMSALRGVGSESMTIETLTGLLNTVPQTGPDGI 216
Query: 242 PMVRGEPLNLYHTEFDNLTWHYD 264
P EPL L + + T+ D
Sbjct: 217 PTASPEPLILTRVTYPDATFRID 239
>gi|331091743|ref|ZP_08340575.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA]
gi|330402642|gb|EGG82209.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA]
Length = 245
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 107/250 (42%), Gaps = 48/250 (19%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + L I Y G NY G+QIQ + TI + KAL K EK RTDSGV
Sbjct: 1 MRRVKLTIAYDGTNYCGWQIQPNGI-TIEEIVNKALSKLT----GEKIVVIGASRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF-DC 119
A V ++ T P E +N LP DI VV VP + R+ DC
Sbjct: 56 HAMGNVAVFD--TETTIPPER-------VAMAVNRILPEDIVVVKSEEVPLDFHPRYCDC 106
Query: 120 LFRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y +F LD+D M + A YL+G HDF + C +
Sbjct: 107 E-KTYEYHIVNTRIPIPTKRLTNYFVSYELDLDKMREGASYLIGEHDFASFCNIK----- 160
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIR--SQGFLWHQIRCIMSVLFLVGQGNE 221
V S + V+ + N E IR GFL++ +R I+ L VG+G
Sbjct: 161 ---------TDVESTVRTVKELEILENGEEITIRISGNGFLYNMVRIIVGTLIRVGRGFY 211
Query: 222 KPEIIQQLVD 231
+P ++++++
Sbjct: 212 EPVQVKEILE 221
>gi|377576601|ref|ZP_09805585.1| tRNA pseudouridine synthase A [Escherichia hermannii NBRC 105704]
gi|377542633|dbj|GAB50750.1| tRNA pseudouridine synthase A [Escherichia hermannii NBRC 105704]
Length = 270
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 112/252 (44%), Gaps = 54/252 (21%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
+R IAL I Y G Y+G+Q Q ++ L KAL K + + + F C GRTD+GV
Sbjct: 9 LRKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSK---VANAPVNVF-CAGRTDAGV 63
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QVV + ++ + + +N NLP DI V VP+ + ARF
Sbjct: 64 HATGQVVHFET---------QAVRKDAAWTLGVNANLPGDIAVRWVKDVPDDFHARFSAT 114
Query: 121 FRNYKYWF---------PQAG-------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R Y+Y Q G LD D MH+AAQ L+G +DF
Sbjct: 115 ARRYRYVIYNHRLRPAVLQQGVTHYHQPLDADRMHRAAQCLIGENDF------------T 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQ 218
+FR + + + W+N+ H N+ F +I++ F+ H +R I+ L VG
Sbjct: 163 SFRAVQCQS--RTPWRNLM----HINVARFGAYVVVDIKANAFVHHMVRNIVGSLMEVGC 216
Query: 219 GNEKPEIIQQLV 230
GN+ I L+
Sbjct: 217 GNQPESWINDLL 228
>gi|52425230|ref|YP_088367.1| tRNA pseudouridine synthase A [Mannheimia succiniciproducens
MBEL55E]
gi|52307282|gb|AAU37782.1| TruA protein [Mannheimia succiniciproducens MBEL55E]
Length = 270
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 111/276 (40%), Gaps = 58/276 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY G+Q Q H + L+K EK C GRTDSGV
Sbjct: 10 IALGIEYNGKNYFGWQRQEK-----VHSVQAELEKALSFVANEKIEVFCAGRTDSGVHGT 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P E + N NLP DI V VP+ + ARF R
Sbjct: 65 GQVVHFETNA--IRP-------EKAWAFGTNANLPDDIAVRWAKEVPDDFHARFSATARR 115
Query: 124 YK--------------YWFPQAGLDID--AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+ Y LD+D M +A ++L+G +DF +FR
Sbjct: 116 YRYVLYCNKLRSAILPYGITHTHLDLDEHKMQEAGRFLLGENDFS------------SFR 163
Query: 168 RLVTHAGVTSAWQNVQFNDSHH-------NICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ W+N+ HH N +I++ F+ H +R I+ L VG GN
Sbjct: 164 --AAQCQSNTPWRNI-----HHLNVIRRGNFVIVDIKANAFVHHMVRNIVGSLMEVGCGN 216
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ PE I+ L + + RK P + E L L +
Sbjct: 217 QPPEWIEWL--LAQKNRKLAAPTAKAEGLYLVQVTY 250
>gi|374320616|ref|YP_005073745.1| tRNA pseudouridine synthase A [Paenibacillus terrae HPL-003]
gi|357199625|gb|AET57522.1| tRNA pseudouridine synthase A [Paenibacillus terrae HPL-003]
Length = 256
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 109/268 (40%), Gaps = 34/268 (12%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
+K+ Y G Y GFQ Q + NTI +L A+ E+ GRTD+GV A+ Q
Sbjct: 1 MKVNYDGTRYDGFQTQPNG-NTIQDYLENAIYSLT----GERLKITGSGRTDAGVHAYGQ 55
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V S + P + + LN LPRDI V VP + AR + Y+
Sbjct: 56 VFNFHTESPI--PIQR-------WCLALNAWLPRDIIVTDAREVPLSFHARRMAKRKTYR 106
Query: 126 Y-----WFPQ-----------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
Y FP LDI AM + +L+GT D+ + + N R
Sbjct: 107 YSINANRFPDIFHRRTQAHHPTSLDIRAMEEGLGHLIGTFDYTSFASRR--SQKTNHIRT 164
Query: 170 VTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
+ A +T + I I GFL H +R IM L VG+G + + I +
Sbjct: 165 IYEAFMTVDHSFSRPGSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSADDIPSI 224
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
++ + R P G L L++ E+D
Sbjct: 225 LEAKN--RSKAGPTAVGHALTLWNVEYD 250
>gi|307595363|ref|YP_003901680.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429]
gi|307550564|gb|ADN50629.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429]
Length = 272
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 110/245 (44%), Gaps = 41/245 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +A K+ Y G + GF T S N+I ++L +A++ I+D + S RTD GV
Sbjct: 1 MPTVAFKVFYDGSLFSGF---TGSTNSIEYYLRRAIR--YFIKDFKLSK---ASRTDPGV 52
Query: 61 SAFCQVVTLK-IRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
SA VV++ I S PG MLN+ LP I+ AW+ V E + AR
Sbjct: 53 SAIGNVVSINYIDSIRLVPG------------MLNSRLPNGIRAWAWAEVDEGFRAR-AA 99
Query: 120 LFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV--TS 177
+ R Y Y P DID M AA+ VG HD N V GV T
Sbjct: 100 VSRTYVYVMPWLYEDIDLMRSAAKLFVGVHDLSNFQ--------------VKEKGVPTTV 145
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
NV + + F + +GF IR I++ L +VG G + ++ L+++ R
Sbjct: 146 MINNVNI-ERFGDYLVFIVIGRGFRNKMIRKIVNALRMVGSGILTIDELRDLIELRI--R 202
Query: 238 KPVYP 242
KP+ P
Sbjct: 203 KPIPP 207
>gi|375262094|ref|YP_005021264.1| tRNA pseudouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|397659208|ref|YP_006499910.1| tRNA pseudouridine synthase A [Klebsiella oxytoca E718]
gi|402845159|ref|ZP_10893504.1| tRNA pseudouridine(38-40) synthase [Klebsiella sp. OBRC7]
gi|365911572|gb|AEX07025.1| tRNA pseudouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|394347413|gb|AFN33534.1| tRNA pseudouridine synthase A [Klebsiella oxytoca E718]
gi|402272089|gb|EJU21314.1| tRNA pseudouridine(38-40) synthase [Klebsiella sp. OBRC7]
Length = 270
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 119/286 (41%), Gaps = 65/286 (22%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q ++ L KAL + E + C GRTD+GV
Sbjct: 12 IALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVA----NEPVNVFCAGRTDAGVHGT 66
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + R++ + + +N NLP DI V PVP + ARF R
Sbjct: 67 GQVVHFETRAQ---------RQDAAWTLGVNANLPGDIAVRWVKPVPPDFHARFSATARR 117
Query: 124 YK-------------------YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
Y+ Y+ P LD + M +AAQ L+G +DF
Sbjct: 118 YRYVIYNHRLRPAVLSRGVTHYYLP---LDAERMQRAAQCLLGENDF------------T 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQ 218
+FR + + + W+NV H N+ + +I++ F+ H +R I+ L VG
Sbjct: 163 SFRAVQCQS--RTPWRNVM----HINVTRYGAYVVVDIKANAFVHHMVRNIVGSLMEVGA 216
Query: 219 GNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD 264
GN+ I +L+ + R + E L L ++ HYD
Sbjct: 217 GNQPESWIAELLAAKD--RTLAAATAKAEGLYLVSVDYPA---HYD 257
>gi|417844832|ref|ZP_12490871.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21639]
gi|341956312|gb|EGT82742.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus M21639]
Length = 269
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 121/280 (43%), Gaps = 60/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q T+ L KAL +C+ EK C GRTDSGVS
Sbjct: 3 IALGIEYNGQNYYGWQRQEKV-RTVQEELEKAL--SCIA--NEKIDIFCAGRTDSGVSGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P E + N +LP DI V V +++ ARF R
Sbjct: 58 GQVVHFETNA--IRP-------EKAWAFGTNAHLPDDIAVSWAKQVDDEFHARFSATARR 108
Query: 124 YKY--------------WFPQAGLDIDA--MHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD+DA MH+A Q L+G HDF +FR
Sbjct: 109 YRYILYCNKLRSAILAGGMTHCHLDLDAEKMHQAGQCLLGEHDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ W+NV H N+ +I++ F+ H +R I+ L VG GN+
Sbjct: 157 --AAQCQSHTPWRNVH----HLNVSRIGKYIIVDIQANAFVHHMVRNIVGSLIEVGVGNQ 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
E +Q L +E+ R+ P + + L L Y +FD
Sbjct: 211 PIEWMQWL--LEQKNRQLAAPTAKPDGLYLVDVIYPQKFD 248
>gi|312140887|ref|YP_004008223.1| tRNA pseudouridine synthase a [Rhodococcus equi 103S]
gi|311890226|emb|CBH49544.1| tRNA pseudouridine synthase A [Rhodococcus equi 103S]
Length = 274
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 100/244 (40%), Gaps = 45/244 (18%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAH--HLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
L I Y G ++ G+ Q L A+ +T ++ GRTD+GV A
Sbjct: 3 LDISYDGTDFSGWARQPGRRTVCGEVEEKLSAIVRTPVL-------LTVAGRTDAGVHAS 55
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + + + P E S ++ L LPRD++V A S PE + ARF + R+
Sbjct: 56 GQVAHVDVPADMI-PEEPSR-----LVRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRH 109
Query: 124 YKYWFPQA-----------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y+Y A +D+DAM +A+ L+G HDF CK G
Sbjct: 110 YEYRLTTAPYGAEPLRARDTVAWPKDVDVDAMREASSRLLGLHDFAAFCKRR--EGATTV 167
Query: 167 RRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
R L Q + S H + F + + F W +R ++ VG+G E +
Sbjct: 168 REL----------QRFDWEQSGHELTAF-VSADAFCWSMVRSLVGAALAVGEGRRTVEWM 216
Query: 227 QQLV 230
L+
Sbjct: 217 AGLL 220
>gi|376242192|ref|YP_005133044.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae CDCE
8392]
gi|372105434|gb|AEX71496.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae CDCE
8392]
Length = 295
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEK------SSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK +IED K GRTD
Sbjct: 15 IRLDLAYDGTDFHGWARQGDSD-------LRTVQK--IIEDTLKLVLQRPIDLTVAGRTD 65
Query: 58 SGVSAFCQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV + + L + D L ++ L +P D+++ S VP ++ AR
Sbjct: 66 AGVHATGQVAHFDVDPAALETRSIAGDPARL--IRRLARLMPDDVRIHNMSFVPAEFDAR 123
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P+ L DI AM AA L+G HDF CK
Sbjct: 124 FSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYRE 183
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G + + T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 184 GASTIRDLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEG 235
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 236 KRADGFTEHLLGETK--RSSSIPVAAACGLSLVGVDY 270
>gi|392392120|ref|YP_006428722.1| pseudouridylate synthase I [Desulfitobacterium dehalogenans ATCC
51507]
gi|390523198|gb|AFL98928.1| pseudouridylate synthase I [Desulfitobacterium dehalogenans ATCC
51507]
Length = 262
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 112/268 (41%), Gaps = 40/268 (14%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R I LK+ Y G +YHGFQ Q L+ + + +E+ + GRTD+GV
Sbjct: 5 RNICLKVAYDGTHYHGFQRQPEFHGPTIQGTLETVWAKLV---EEEVTLNTAGRTDTGVH 61
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV + +++ +++P K N+ LPRDI+++A E + ARF +
Sbjct: 62 AAGQVVNFRTGARIPV-------DKIP--KAFNSLLPRDIRILAAQEAAEDFHARFSAKW 112
Query: 122 RNYKYWF---PQAG-------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+ Y Y P A LD M + AQYLVG H+F+ G
Sbjct: 113 KRYDYQIDNRPVADVFTRLYSLHEPVKLDWQRMRQGAQYLVGRHNFKAFSA--AGGTSKT 170
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
F R + V +++ C GFL++ +R I L VG+ +PE
Sbjct: 171 FERTLYLCQVAENQGDIRIT------CI----GDGFLYNMVRIIAGTLVYVGKKRIQPEG 220
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYH 253
I ++ R V +G L+ H
Sbjct: 221 IPDILTSLDRTRGGVTAPPQGLTLSYVH 248
>gi|419860166|ref|ZP_14382811.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387983374|gb|EIK56851.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 288
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED------KEKSSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK +IED + GRTD
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD-------LRTVQK--IIEDTLTLVLQRPIDLTVAGRTD 58
Query: 58 SGVSAFCQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV + + L + D L ++ L +P D+++ S VP ++ AR
Sbjct: 59 AGVHATGQVAHFDVDPAALETRSIAGDPARL--IRRLARLMPADVRIHNMSFVPAEFDAR 116
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P+ L DI AM AA L+G HDF CK
Sbjct: 117 FSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYRE 176
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G + + T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 177 GASTIRDLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEG 228
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 229 KRADGFTEHLLGETK--RSSSIPVAAACGLSLVGVDY 263
>gi|376247821|ref|YP_005139765.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC04]
gi|376250643|ref|YP_005137524.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC03]
gi|372112147|gb|AEX78206.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC03]
gi|372114389|gb|AEX80447.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC04]
Length = 295
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 110/271 (40%), Gaps = 33/271 (12%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
I L + Y G ++HG+ Q SD + K ++ T + + GRTD+GV A
Sbjct: 15 IRLDLAYDGTDFHGWARQGDSDLSTVQ---KIIEDTLTLVLQRPIDLTVAGRTDAGVHAT 71
Query: 64 CQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV + + L + D L ++ L +P D+++ S VP ++ ARF L R
Sbjct: 72 GQVAHFDVDPAALETRSIAGDPARL--IRRLARLMPDDVRIHNMSFVPAEFDARFSALRR 129
Query: 123 NYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
+Y Y P+ L DI AM AA L+G HDF CK G +
Sbjct: 130 HYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYREGASTIR 189
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
+ T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 190 DLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEGKRADGF 241
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 242 TEHLLGETK--RSSSIPVAAACGLSLVGVDY 270
>gi|424824853|ref|ZP_18249840.1| tRNA pseudouridine synthase A [Chlamydophila abortus LLG]
gi|333409952|gb|EGK68939.1| tRNA pseudouridine synthase A [Chlamydophila abortus LLG]
Length = 268
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 116/270 (42%), Gaps = 41/270 (15%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M + + + YQG Y G+Q Q +D +I + +L + ++ GRTD+GV
Sbjct: 1 MTQVVILLAYQGTAYAGWQRQ-PNDLSIQEVIENSLAQVV----GKRIPVTSSGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
AF QV + + P KMLN LP+DI + +K+ +RF +
Sbjct: 56 HAFGQV------AHFSQPDHPQFSQASSIKKMLNALLPKDIVIRDVVLGDDKFHSRFSAI 109
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y ++P+ L D M + AQYL+GTHDF + N G
Sbjct: 110 AKEYRYVLTRSPKPLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFA--NHGRDYT 167
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + + + + V IC R GFL+ +R I+ L + +G PE
Sbjct: 168 STIRTLFNLDIVDHGETVTI------IC----RGNGFLYKMVRNIVGSLLDISRGKYPPE 217
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHT 254
IQ+++ + + P P L+LYH
Sbjct: 218 YIQEILMQKNRRQGP--PAAPSHALSLYHV 245
>gi|152990852|ref|YP_001356574.1| tRNA pseudouridine synthase A [Nitratiruptor sp. SB155-2]
gi|151422713|dbj|BAF70217.1| tRNA pseudouridine synthase A [Nitratiruptor sp. SB155-2]
Length = 241
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 104/243 (42%), Gaps = 40/243 (16%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
I Y G + GFQIQ + NT+ HHL ALQ+ + +S GRTD GV A QV+
Sbjct: 7 ISYDGSRFDGFQIQKHTANTVMHHLYNALQRVGI-----ESKIVGSGRTDKGVHATAQVI 61
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYW 127
+ P S+ L +LN +L I++ VP+++ AR+ R Y+Y
Sbjct: 62 HFDL------PPFWSELERLQ--NLLNESLRPYIQIKRVVKVPKEFHARYSAKRRAYRYL 113
Query: 128 FPQ--------------AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
+ + LDI+ + + G HDFR M G+ T +
Sbjct: 114 LKKSEPSVFENAYLHHVSNLDIEIIKRNISLFEGRHDFRYF--MKTGSD--------TKS 163
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE-IIQQLVDI 232
V ++ + + F GFL QIR I+ L +G+G KPE II QL
Sbjct: 164 SVRRIFKTALYEKDDLYVLYFE--GDGFLRAQIRLIVGALIKLGKGELKPEQIIDQLACK 221
Query: 233 EKY 235
+Y
Sbjct: 222 ARY 224
>gi|62901272|sp|Q65TC8.2|TRUA_MANSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
Length = 263
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 111/276 (40%), Gaps = 58/276 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY G+Q Q H + L+K EK C GRTDSGV
Sbjct: 3 IALGIEYNGKNYFGWQRQEK-----VHSVQAELEKALSFVANEKIEVFCAGRTDSGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P E + N NLP DI V VP+ + ARF R
Sbjct: 58 GQVVHFETNA--IRP-------EKAWAFGTNANLPDDIAVRWAKEVPDDFHARFSATARR 108
Query: 124 YK--------------YWFPQAGLDID--AMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+ Y LD+D M +A ++L+G +DF +FR
Sbjct: 109 YRYVLYCNKLRSAILPYGITHTHLDLDEHKMQEAGRFLLGENDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHH-------NICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ W+N+ HH N +I++ F+ H +R I+ L VG GN
Sbjct: 157 --AAQCQSNTPWRNI-----HHLNVIRRGNFVIVDIKANAFVHHMVRNIVGSLMEVGCGN 209
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ PE I+ L + + RK P + E L L +
Sbjct: 210 QPPEWIEWL--LAQKNRKLAAPTAKAEGLYLVQVTY 243
>gi|375290217|ref|YP_005124757.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae 241]
gi|376245051|ref|YP_005135290.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC01]
gi|42559717|sp|P60349.1|TRUA_CORDI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|371579888|gb|AEX43555.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae 241]
gi|372107681|gb|AEX73742.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC01]
Length = 288
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED------KEKSSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK +IED + GRTD
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD-------LRTVQK--IIEDTLTLVLQRPIDLTVAGRTD 58
Query: 58 SGVSAFCQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV + + L + D L ++ L +P D+++ S VP ++ AR
Sbjct: 59 AGVHATGQVAHFDVDPAALETRSIAGDPARL--IRRLARLMPDDVRIHNMSFVPAEFDAR 116
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P+ L DI AM AA L+G HDF CK
Sbjct: 117 FSALRRHYVYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYRE 176
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G + + T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 177 GASTIRDLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEG 228
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 229 KRADGFTEHLLGETK--RSSSIPVAAACGLSLVGVDY 263
>gi|328955882|ref|YP_004373215.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2]
gi|328456206|gb|AEB07400.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2]
Length = 299
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 46/242 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ LK+ Y G Y GF Q T+A + +A++ + C GRTD+GV A
Sbjct: 42 LVLKLGYDGTRYSGFAEQPDR-CTVAGEVRQAMETFL----RRPIELICAGRTDAGVHAI 96
Query: 64 CQVVTLKIRSKLTSPGEESDDNELP---YLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
Q V++ + P E E+P +L+ ++ LP DI V +SARFD
Sbjct: 97 GQHVSVAV-----LPAE----CEIPRARWLRAMDALLPPDISVAGVFRARRGFSARFDAR 147
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R Y Y W+ + LD AM AA LVG HDF++ C+ + G
Sbjct: 148 DRTYTYRIAAGSVRPALIRPYVWWHRLELDEGAMRDAATCLVGEHDFKSFCRASSAAGRP 207
Query: 165 NFRRLVTHAGVTSAWQNVQF---NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
RR++ +V F ++ N+ F IR FL +R I+ L VG
Sbjct: 208 TSRRVL----------DVDFAHESELGENVLAFTIRGNAFLHSMVRTIVGSLAEVGTHRR 257
Query: 222 KP 223
P
Sbjct: 258 DP 259
>gi|38233160|ref|NP_938927.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae NCTC
13129]
gi|38199419|emb|CAE49063.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae]
Length = 295
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED------KEKSSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK +IED + GRTD
Sbjct: 15 IRLDLAYDGTDFHGWARQGDSD-------LRTVQK--IIEDTLTLVLQRPIDLTVAGRTD 65
Query: 58 SGVSAFCQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV + + L + D L ++ L +P D+++ S VP ++ AR
Sbjct: 66 AGVHATGQVAHFDVDPAALETRSIAGDPARL--IRRLARLMPDDVRIHNMSFVPAEFDAR 123
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P+ L DI AM AA L+G HDF CK
Sbjct: 124 FSALRRHYVYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYRE 183
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G + + T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 184 GASTIRDLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEG 235
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 236 KRADGFTEHLLGETK--RSSSIPVAAACGLSLVGVDY 270
>gi|258646098|ref|ZP_05733567.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
gi|260403476|gb|EEW97023.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
Length = 265
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 42/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I + + Y+G Y GFQ Q +S T+ L ALQK K++ RTD+GV
Sbjct: 1 MRNIRITLAYEGTAYSGFQRQENSI-TVQEILETALQKLT----GTKTTLYFAARTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A+ Q T S + PG+ ++ LN LP DI+V VP +S R +
Sbjct: 56 HAYGQECTFYTESSI--PGDR-------FIFALNILLPPDIRVTESREVPYDFSVRRNNY 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y Y W LDI M KAA+ L GTHDF + GN V
Sbjct: 107 GKTYGYLLTEEKDCPPFFKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSF----RGNNSV 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
A +++ HH F + +GFL+H +R I L G G P+
Sbjct: 163 P-------ASPVRTIHDIRIIKKHHFFHIF-VTGEGFLYHMVRNIAGALADAGTGKLTPK 214
Query: 225 IIQQLVD 231
++++++
Sbjct: 215 DLREILE 221
>gi|257886188|ref|ZP_05665841.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|257822044|gb|EEV49174.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501]
Length = 247
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 98/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ + +N LPRDI + +PE++ +R++ +
Sbjct: 57 HARGQVANFKTNTEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D + A + LVGTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLDAACEKLVGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R IM L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELSIERKGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|448361248|ref|ZP_21549869.1| tRNA pseudouridine synthase A [Natrialba asiatica DSM 12278]
gi|445651058|gb|ELZ03968.1| tRNA pseudouridine synthase A [Natrialba asiatica DSM 12278]
Length = 287
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 111/282 (39%), Gaps = 52/282 (18%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQK-TCLIEDKEK-SSFACCGRTDSGVSA 62
A ++ Y G YHGFQ Q T+ L AL+ + L D +K + +A GRTD+GVSA
Sbjct: 3 AFRLAYDGTAYHGFQRQPDV-ATVEDELFAALESLSVLATDADKPAGYAAAGRTDAGVSA 61
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
Q V LT + LN++LP DI+ A + P+++ A R
Sbjct: 62 LAQTVAFDAPDWLTP-------------RALNSDLPADIRAWAAADAPDEFHATHHARRR 108
Query: 123 NYKY--WFPQA------------------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 162
Y Y + P A +D D +A L G HDF NL +
Sbjct: 109 EYTYQLYAPPADDAPRRPGTADSTANRDRAVDDDRFRRACHVLSGDHDFHNLTPDD---- 164
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
R + +A ++ +F + + GF +R ++S+ VG G+
Sbjct: 165 -----RNTERSPTLTATRDAEF-------IVVTVTAGGFARELVRRLVSLARAVGTGDAS 212
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD 264
E +++ + E P EPL L + L + D
Sbjct: 213 LEKVERALGPEPLPGHKGIAPAPPEPLVLTDVRYPELEFEVD 254
>gi|359449085|ref|ZP_09238586.1| tRNA pseudouridine38-40 synthase [Pseudoalteromonas sp. BSi20480]
gi|358045117|dbj|GAA74835.1| tRNA pseudouridine38-40 synthase [Pseudoalteromonas sp. BSi20480]
Length = 264
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 105/252 (41%), Gaps = 52/252 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y G+Q Q S N++ + KAL C C GRTD+GV
Sbjct: 3 VALGVEYNGARYSGWQRQ-SHVNSVQQEVEKALSSIC----NHPVEIVCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKM-LNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QVV E + E+ M +N LP+DI + PV E + ARF R
Sbjct: 58 GQVVHF----------ETNASREMVAFTMGMNTLLPKDIAIRFAQPVAEDFHARFSATAR 107
Query: 123 NYKYW---FPQAG-------------LDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y +P G LD M +A Q+L+G HDF + C+ N
Sbjct: 108 RYRYVIYNYPYRGAVMNEGVTHFHHKLDEKVMQEACQHLIGEHDFTSFRALHCQANTA-- 165
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+R + H V V +I++ FL H +R I L +G +
Sbjct: 166 ----KRTIHHLSVQRQGDYVV----------IDIKANAFLHHMVRNITGCLMDIGLHKHQ 211
Query: 223 PEIIQQLVDIEK 234
P +++L+D+++
Sbjct: 212 PVWLKELLDLKE 223
>gi|282163988|ref|YP_003356373.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE]
gi|282156302|dbj|BAI61390.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE]
Length = 279
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 32/296 (10%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+A K+ Y G ++ G Q Q T+ L K L + +I +K K F+ GRTD+GV A
Sbjct: 15 VAFKLAYVGTDFSGSQSQPGR-RTVEGELRKGLVEKGIIGEKTKVEFS--GRTDAGVHAL 71
Query: 64 CQVVTLKIRS-KLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QV+ ++ KLT P +++N+ LP D+ V A + VP+ + R + R
Sbjct: 72 GQVIAFVPKNDKLTEP------------RIINSVLPADMWVYAKAVVPDDFDPRRHAVSR 119
Query: 123 NYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNV 182
Y+Y + + +Q GTHDF N + V R V VT
Sbjct: 120 TYRYLLYAPDVIERRIVTYSQLFPGTHDFTNFSSVEPNKNPV---RTVKSISVTK----- 171
Query: 183 QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYP 242
++ +I + FLW+ +R I++ L LVG + I+Q++ ++Y R+ + P
Sbjct: 172 -----RGDMYVIDIEADSFLWNMVRKIVTGLRLVGSNKRPAQWIEQMLKPDEY-REGIPP 225
Query: 243 MVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVR 298
+ L L E+ + + +E + + + A + GE KD ++
Sbjct: 226 AL-AAGLYLMKVEYPGVEFLEEEYSKGRAYQRMLHSFEWQYTMAEVYGE-FKDAMK 279
>gi|90408620|ref|ZP_01216774.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3]
gi|90310264|gb|EAS38395.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3]
Length = 261
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 110/270 (40%), Gaps = 46/270 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q + + + L+K I C GRTD+GV
Sbjct: 3 IALGIEYDGTAYYGWQRQKDVIS-----VQEELEKALSIVANHSVRVNCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ ++ N++ + +N NLP+DI V V + + ARF R
Sbjct: 58 GQVIHFD---------TQAVRNDVAWTLGINANLPKDIAVRWCKHVDDSFHARFSATARR 108
Query: 124 YKY---------WFPQAGL-------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y +GL D D MH+A Q++VGTHDF +FR
Sbjct: 109 YRYIIYNHVLRPGILNSGLSHYHHLLDADKMHQAGQFIVGTHDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
L A + + +I++ FL H +R I L +GQ N+K + +
Sbjct: 157 ALHCQANTPVRSIHSLNVTRRADFIIIDIKANAFLHHMVRNIAGSLIEIGQDNQKVDWLM 216
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
L++ + R +P LY E D
Sbjct: 217 TLLEYKNRARAA----ATAKPGGLYLVEVD 242
>gi|404399642|ref|ZP_10991226.1| tRNA pseudouridine synthase A [Pseudomonas fuscovaginae UPB0736]
Length = 274
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 103/250 (41%), Gaps = 53/250 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y+G Y G+Q Q S ++ L AL K S C GRTD+GV A
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVLSVQETLEDALSKVA----DSPVSLMCAGRTDAGVHAC 64
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPV-PEKYSARFDCLFR 122
QVV R + + + N NLP DI V+W+ V P + ARF + R
Sbjct: 65 GQVVHFDTRVERSMKA---------WTMGANINLPHDIS-VSWAKVMPAHFHARFKAIAR 114
Query: 123 NYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL----CKMNVGN 161
Y+Y W + LD M +AA+YLVGTHDF C+
Sbjct: 115 RYRYVIYNDQIRPAHLNQEITWNHRP-LDEQRMAEAARYLVGTHDFSAFRAGQCQAKSPI 173
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
V+ R+ H + +IR+ FL H +R I VL +G G
Sbjct: 174 KQVHHLRVTRHG----------------KMIVIDIRAGAFLHHMVRNIAGVLMTIGAGER 217
Query: 222 KPEIIQQLVD 231
E +++++
Sbjct: 218 PVEWAREVLE 227
>gi|402467646|gb|EJW02917.1| tRNA pseudouridine synthase A [Edhazardia aedis USNM 41457]
Length = 394
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 17/131 (12%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
+ IA+K Y G NY G +Q +NTIAHH+ K+L+K + S+ CGRTD+GV
Sbjct: 5 LTKIAIKFSYDGTNYSGLALQPDENNTIAHHIHKSLEKYNFYD----SAVVFCGRTDAGV 60
Query: 61 SAFCQVVTLKIR--SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
SA + + I+ +K + G M+NN LP +I + W+ V +K+ AR D
Sbjct: 61 SASNMIASFYIKNYAKGMNVGA-----------MINNALPDEIVIKEWALVDDKFDARRD 109
Query: 119 CLFRNYKYWFP 129
C R+YKY+F
Sbjct: 110 CRQRHYKYFFS 120
>gi|376289712|ref|YP_005161959.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae C7
(beta)]
gi|372103108|gb|AEX66705.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae C7
(beta)]
Length = 288
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 112/277 (40%), Gaps = 45/277 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEK------SSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK +IED K GRTD
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD-------LRTVQK--IIEDTLKLVLQRPIDLTVAGRTD 58
Query: 58 SGVSAFCQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV + + L + D L ++ L +P D+++ S VP ++ AR
Sbjct: 59 AGVHATGQVAHFDVDPAALETRSIAGDPARL--IRRLARLMPADVRIHNMSFVPAEFDAR 116
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R Y Y P+ L DI AM AA L+G HDF CK
Sbjct: 117 FSALRRRYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYRE 176
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G + + T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 177 GASTIRDLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEG 228
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 229 KRADGFTEHLLGETK--RSSSIPVAAACGLSLVGVDY 263
>gi|256822702|ref|YP_003146665.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069]
gi|256796241|gb|ACV26897.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069]
Length = 264
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 102/255 (40%), Gaps = 58/255 (22%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M +AL I Y G YHG+Q Q+ + + + + L+K E +C GRTD+GV
Sbjct: 1 MTKVALCIEYDGHRYHGWQRQSHASS-----VQQTLEKVLSTIADEPIEVSCAGRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKM-LNNNLPRDIKVVAWSPVPEKYSARFDC 119
A Q++ ++ S++ L M N LP DI V V + + ARF
Sbjct: 56 HATGQIIHFEL----------SNERPLKAWTMGANTQLPDDIAVRWAHSVSDDFHARFSA 105
Query: 120 LFRNYKYWFP----------------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
R Y+Y +A LDID M++A Y G DF
Sbjct: 106 KARRYRYIIANTPTRPAISRSGLTWCRAPLDIDVMNQACAYFPGEQDFAAF--------- 156
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICE-------FNIRSQGFLWHQIRCIMSVLFLV 216
S F + HH E +I++ FL H +R I L +
Sbjct: 157 ----------QAASCQSKTSFRNIHHLFVERLGEYVVIDIKANAFLHHMVRNIAGSLIEI 206
Query: 217 GQGNEKPEIIQQLVD 231
G+ N+KPE +QL+D
Sbjct: 207 GRYNQKPEWAKQLLD 221
>gi|438001157|ref|YP_007270900.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|432177951|emb|CCP24924.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 256
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 111/246 (45%), Gaps = 50/246 (20%)
Query: 6 LKIL--YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+KIL Y+G Y G+Q Q + A + + L+ E + GRTD+GV A
Sbjct: 16 VKILLEYEGTAYSGWQRQKN-----AISIQEVLENAIKSITGEAVNVIGSGRTDAGVHAL 70
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF------ 117
QV K ++K+ P E+ LPY +N+ LP DI V VPE + ARF
Sbjct: 71 GQVANFKTQTKI--PIEK-----LPY--AINSKLPEDIVVKHAEIVPEDFHARFWAKAKI 121
Query: 118 -----------DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGVV 164
L + Y Y++P+ L++ AM KAA L+GTHDF + N V + V
Sbjct: 122 YTYTIYNAKFPSPLLKRYSYFYPRP-LNVRAMKKAADMLIGTHDFASFMASNSPVKSTVR 180
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
RL +QN +I +F I + GFL++ +R I L VG +K
Sbjct: 181 CIERL-------EVFQN-------GDIVKFEIEANGFLYNMVRIIAGTLLDVGINKKKAN 226
Query: 225 IIQQLV 230
I ++
Sbjct: 227 DIISII 232
>gi|149797294|ref|YP_001294664.1| tRNA-pseudouridine synthase A [Symbiobacterium thermophilum IAM
14863]
Length = 267
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 102/244 (41%), Gaps = 40/244 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G Y GFQ Q + TI L +AL+ + + + A GRTD+GV
Sbjct: 1 MRTIKLILAYDGTAYAGFQRQPNG-ITIQQRLEEALR--AVTGEPDLRIGAAAGRTDAGV 57
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QVV L R+ T P + + LN +LP DI V+ P + AR+
Sbjct: 58 HARGQVVHL--RTYATIPIDR-------WPAALNGHLPDDIAVIGAEEAPPDFHARYWAR 108
Query: 121 FRNYKYWF-------PQAGL---------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y F P A L D+DAM +AA LVG HDF G
Sbjct: 109 EKRYRYTFCLSPYRLPMARLYSYHWHRPVDVDAMRRAAALLVGRHDFAAF--RATGGSAR 166
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R +T +T ++ + GFL++ +R I L VG G +
Sbjct: 167 TTVRTITRLTLT----------EEPPFLHLDVTADGFLYNMVRIIAGTLLEVGAGRRSLD 216
Query: 225 IIQQ 228
+ Q
Sbjct: 217 RVAQ 220
>gi|419839016|ref|ZP_14362434.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus HK386]
gi|386909727|gb|EIJ74391.1| tRNA pseudouridine synthase A [Haemophilus haemolyticus HK386]
Length = 269
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 121/280 (43%), Gaps = 60/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q ++ L KAL +C+ EK C GRTDSGVS
Sbjct: 3 IALGIEYNGQNYYGWQRQEKV-RSVQEELEKAL--SCIA--NEKIDIFCAGRTDSGVSGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + P E + N +LP DI V V +++ ARF R
Sbjct: 58 GQVVHFETNA--VRP-------EKAWAFGTNAHLPDDIAVSWAKQVDDEFHARFSATARR 108
Query: 124 YKY--------------WFPQAGLDIDA--MHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD+DA MH+A Q L+G HDF +FR
Sbjct: 109 YRYILYCNKLRSAILAGGMTHCHLDLDAEKMHQAGQCLLGEHDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ W+NV H N+ +I++ F+ H +R I+ L VG GN+
Sbjct: 157 --AAQCQSHTPWRNVH----HLNVSRIGKYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQ 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
E +Q L +E+ R+ P + + L L Y +FD
Sbjct: 211 PIEWMQWL--LEQKNRQLAAPTAKPDGLYLVDVIYPQKFD 248
>gi|384514261|ref|YP_005709354.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|430360085|ref|ZP_19426062.1| tRNA pseudouridine synthase [Enterococcus faecalis OG1X]
gi|430366115|ref|ZP_19427296.1| tRNA pseudouridine synthase [Enterococcus faecalis M7]
gi|327536150|gb|AEA94984.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF]
gi|429512997|gb|ELA02590.1| tRNA pseudouridine synthase [Enterococcus faecalis OG1X]
gi|429517129|gb|ELA06596.1| tRNA pseudouridine synthase [Enterococcus faecalis M7]
Length = 246
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 101/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 108 GKQYSYYVWNRPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 155 IGFSALKKTKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|392403751|ref|YP_006440363.1| tRNA pseudouridine synthase A [Turneriella parva DSM 21527]
gi|390611705|gb|AFM12857.1| tRNA pseudouridine synthase A [Turneriella parva DSM 21527]
Length = 276
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 124/294 (42%), Gaps = 52/294 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M AL I Y G Y GFQ+Q ++ A L+K I +++ C GRTD+GV
Sbjct: 1 MAKTALTIEYDGAPYFGFQLQKQQNSVQAE-----LEKVLGIVLRQRVRVYCAGRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
+A QVV GE +L + LN+ LP+DI V + VP+ + ARF CL
Sbjct: 56 NALGQVVHFA--------GEPPKTLDL-LIYALNSLLPKDIAVRHGAVVPDSFHARFSCL 106
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN-VGNG 162
R Y Y W + LD A+ A +++G ++F + V G
Sbjct: 107 QREYVYVVYNAPYRPGVLGYKALWV-RGDLDWSAVRSAIPHILGENNFAAFTQAKLVKRG 165
Query: 163 VVNFRRLVTHAGVTSAWQNVQ-FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
RR+ +V+ D + +I GFL + IR +M L + +G
Sbjct: 166 EKTIRRI----------DDVRIIEDGPYTYV--HIVGSGFLHNMIRILMGTLLDIARGKT 213
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDL 275
+PE + + + + R ++ + L H E+ + YD+ H LR +
Sbjct: 214 RPEELAGI--LARQDRVGAGVTMKPDALYFLHAEYKD----YDQSGAQHALRQM 261
>gi|408828940|ref|ZP_11213830.1| tRNA pseudouridine synthase A [Streptomyces somaliensis DSM 40738]
Length = 283
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L + Y G ++HG+ Q T+ + AL+ + GRTD+GV A
Sbjct: 8 VRLDLSYDGRDFHGWARQAGGRRTVQGEIEDALR--TVTRSTRTYELTVAGRTDAGVHAR 65
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV + + PGE ++ L+ L L D++V P ++ARF ++R
Sbjct: 66 GQVAHVDL------PGEVWAEHRDKLLRRLAGRLAHDVRVWRVEEAPPGFNARFSAVWRR 119
Query: 124 YKY------------------W--FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
Y Y W +P LD+DAM+ AA+ L+G HDF CK +G
Sbjct: 120 YAYRVTDNPGGVDPLLRGHVLWHDWP---LDVDAMNAAAERLLGEHDFAAYCKRR--DGA 174
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
R L Q +++ + E +R+ F + +R ++ + VG G+
Sbjct: 175 TTIRTL----------QELRWERLPGGVLEATVRADAFCHNMVRSLVGAMLFVGDGH 221
>gi|325265188|ref|ZP_08131914.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
gi|324029592|gb|EGB90881.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
Length = 263
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 102/247 (41%), Gaps = 42/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ I L + Y G NY G+QIQ + TI L K L + E+ RTDSGV
Sbjct: 1 MKRIKLTVAYDGTNYCGWQIQPNG-ITIEEILNKKLSRLT----GEEIRVIGASRTDSGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V + + + L Y LN +P DI +V VP + R+
Sbjct: 56 HALGNVAVFDTETTIPP-------DRLAY--ALNQRMPEDIVIVKSEEVPADWHPRYCDT 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y +F LD+ M +AA YL G HDF + C NV V
Sbjct: 107 VKTYEYLILNAKIPDPTRRLTTYFVSYDLDLQKMRRAAGYLSGEHDFASFC--NVRTNVE 164
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ R + + + + IR GFL++ +R I+ L VG+G PE
Sbjct: 165 DTVRTIYELDILENGEEIT----------IRIRGNGFLYNMVRIIVGTLLRVGRGFYTPE 214
Query: 225 IIQQLVD 231
++ +++
Sbjct: 215 QVKDILE 221
>gi|307726601|ref|YP_003909814.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003]
gi|307587126|gb|ADN60523.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003]
Length = 270
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 44/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ IAL + Y G + G+Q Q NT+ L +AL++ + GRTD+GV
Sbjct: 1 MKRIALGVQYDGTAFCGWQSQPHG-NTVQDELERALREFA----QTPVHTVVAGRTDTGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
QVV E + ++ +++ N+ LP+ I V P+PE + ARF
Sbjct: 56 HGLGQVVHFDT---------ELERADVSWVRGTNSFLPKTISVQWAKPMPEAFHARFSAF 106
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
R Y Y W A LDIDAMH AA +L+G HDF +
Sbjct: 107 ERTYYYVLYVHPVRSPMLAGRAGWV-HAALDIDAMHAAAAHLIGEHDFSAFRSSQCQS-- 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ V H Q H + F R+ FL H +R +M L +G+G
Sbjct: 164 ---KTPVKHLYQIDIQQ-------HGDFVHFRFRANAFLHHMVRNVMGCLVYIGKGRRPV 213
Query: 224 EIIQQLV 230
+ + +++
Sbjct: 214 QWMAEVL 220
>gi|227554442|ref|ZP_03984489.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|229547551|ref|ZP_04436276.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|255970776|ref|ZP_05421362.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|256761150|ref|ZP_05501730.1| tRNA pseudouridine synthase [Enterococcus faecalis T3]
gi|256960384|ref|ZP_05564555.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96]
gi|257080567|ref|ZP_05574928.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|293384357|ref|ZP_06630242.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712]
gi|307274425|ref|ZP_07555609.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|307287287|ref|ZP_07567351.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|307289762|ref|ZP_07569700.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|312902050|ref|ZP_07761311.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|312908558|ref|ZP_07767502.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512]
gi|312908972|ref|ZP_07767834.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516]
gi|312951751|ref|ZP_07770643.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|384516827|ref|YP_005704132.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|421514336|ref|ZP_15961026.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
gi|422684612|ref|ZP_16742845.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
gi|422691913|ref|ZP_16749941.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|422693620|ref|ZP_16751630.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|422702460|ref|ZP_16760295.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|422713974|ref|ZP_16770722.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
gi|422716729|ref|ZP_16773431.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|422724999|ref|ZP_16781469.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|227176427|gb|EEI57399.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22]
gi|229307324|gb|EEN73311.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322]
gi|255961794|gb|EET94270.1| tRNA pseudouridine synthase [Enterococcus faecalis T1]
gi|256682401|gb|EEU22096.1| tRNA pseudouridine synthase [Enterococcus faecalis T3]
gi|256950880|gb|EEU67512.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96]
gi|256988597|gb|EEU75899.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol]
gi|291078349|gb|EFE15713.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712]
gi|306499218|gb|EFM68695.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411]
gi|306501620|gb|EFM70914.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109]
gi|306508935|gb|EFM78021.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134]
gi|310625525|gb|EFQ08808.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512]
gi|310630239|gb|EFQ13522.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102]
gi|311290672|gb|EFQ69228.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516]
gi|311290832|gb|EFQ69388.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470]
gi|315030617|gb|EFT42549.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000]
gi|315148974|gb|EFT92990.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244]
gi|315153400|gb|EFT97416.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031]
gi|315160015|gb|EFU04032.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312]
gi|315166006|gb|EFU10023.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302]
gi|315575028|gb|EFU87219.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B]
gi|315581086|gb|EFU93277.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A]
gi|323478960|gb|ADX78399.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62]
gi|401672554|gb|EJS79022.1| tRNA pseudouridine synthase A [Enterococcus faecalis ATCC 29212]
Length = 246
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 101/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 108 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 155 IGFSALKKTKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|145641169|ref|ZP_01796749.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021]
gi|145274006|gb|EDK13872.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.4-21]
Length = 269
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 122/280 (43%), Gaps = 60/280 (21%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY+G+Q Q ++ L KAL +C+ EK C GRTDSGVS
Sbjct: 3 IALGIEYNGQNYYGWQRQEKV-RSVQEELEKAL--SCIA--NEKIEIFCAGRTDSGVSGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + + + P E + N +LP DI V V +++ ARF R
Sbjct: 58 GQVVHFE--TNVIRP-------EKAWAFGTNAHLPDDIAVSWAKQVDDEFHARFSATARR 108
Query: 124 YKYWF--------------PQAGLDIDA--MHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y LD+DA MH+A Q L+G HDF +FR
Sbjct: 109 YRYILYCNKLRSAILAGGITHCHLDLDAEKMHQAGQCLLGEHDFS------------SFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ W+NV H N+ +I++ F+ H +R I+ L VG GN+
Sbjct: 157 --AAQCQSHTPWRNVH----HLNVSRIGKYIIVDIQANAFVHHMVRNIVGSLIEVGAGNK 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNL----YHTEFD 257
E +Q L +E+ R+ P + + L L Y +FD
Sbjct: 211 PIEWMQWL--LEQKNRQLAAPTAKPDGLYLVDVIYPQKFD 248
>gi|256854698|ref|ZP_05560062.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
gi|256710258|gb|EEU25302.1| tRNA pseudouridine synthase [Enterococcus faecalis T8]
Length = 246
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 101/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 108 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 155 IGFSALKKTKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|448368394|ref|ZP_21555346.1| tRNA pseudouridine synthase A [Natrialba aegyptia DSM 13077]
gi|445652224|gb|ELZ05124.1| tRNA pseudouridine synthase A [Natrialba aegyptia DSM 13077]
Length = 287
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 110/282 (39%), Gaps = 52/282 (18%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDK--EKSSFACCGRTDSGVSA 62
A ++ Y G YHGFQ Q T+ L AL+ ++ K + + +A GRTD+GVSA
Sbjct: 3 AFRLAYDGTAYHGFQRQPDV-ATVEDDLFDALRSLSVLASKADKPAGYAAAGRTDAGVSA 61
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
Q V LT + LN++LP DI+ A + P+++ A R
Sbjct: 62 LAQTVAFDAPDWLTP-------------RALNSDLPADIRAWAAADAPDEFHATHHARRR 108
Query: 123 NYKYWF--------------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNG 162
Y Y P +D D +A L G HDF NL +
Sbjct: 109 EYTYQLHAPPADDAPRRSGTADSTGDPDRAVDDDRFQRACHALSGDHDFHNLTPDD---- 164
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
N R T +A ++ +F + + GF +R ++S+ + VG G+
Sbjct: 165 -HNTERSPT----LTATRDAEF-------IVITVTAGGFSRELVRRLVSLAWAVGTGDAP 212
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD 264
E +++ + E P EPL L + L + D
Sbjct: 213 LEKVERALGPEPLPGHEGIAPAPPEPLVLTDVRYPELEFEVD 254
>gi|376253658|ref|YP_005142117.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae PW8]
gi|376256455|ref|YP_005144346.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae VA01]
gi|376292609|ref|YP_005164283.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC02]
gi|372109932|gb|AEX75992.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC02]
gi|372116742|gb|AEX69212.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae PW8]
gi|372118972|gb|AEX82706.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae VA01]
Length = 288
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED------KEKSSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK +IED + GRTD
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD-------LRTVQK--IIEDTLTLVLQRPIDLTVAGRTD 58
Query: 58 SGVSAFCQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV + + L + D L ++ L +P D+++ S VP ++ AR
Sbjct: 59 AGVHATGQVAHFDVDPAALETRSIAGDPARL--IRRLARLMPDDVRIHNMSFVPAEFDAR 116
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P+ L DI AM AA L+G HDF CK
Sbjct: 117 FSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYRE 176
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G + + T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 177 GASTIRDLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEG 228
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 229 KRADGFTEHLLGETK--RSSSIPVAAACGLSLVGVDY 263
>gi|91200879|emb|CAJ73934.1| strongly similar to tRNA pseudouridine synthase I [Candidatus
Kuenenia stuttgartiensis]
Length = 244
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 54/253 (21%)
Query: 1 MRPIALKILYQGFNYHGFQIQ---TSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTD 57
MR + L I Y+G NY G+Q Q S T+ H + + +E+ GRTD
Sbjct: 1 MRNVRLTIEYEGTNYAGWQWQKNAISVQETLTHAVRTVI--------REEVEIHGAGRTD 52
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
+GV A QV K S + P ++ L+ +N +LP+DI + + + E + AR+
Sbjct: 53 AGVHALGQVANFKTYSAI--PAKQ-------LLRAINFHLPQDITIKDVADMEEGFHARY 103
Query: 118 DCLFRNYKY-----W--------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN 158
+ Y+Y W FP LD+ M AAQYL+GTHDF +
Sbjct: 104 SATSKVYRYTVLNDWLRTSLNRNFCYVYGFP---LDLSKMMTAAQYLIGTHDFTSFTTKA 160
Query: 159 VGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
+ N R+ T +N++ I F + + GFL+ +R I+ L +G+
Sbjct: 161 LDNK----DRIRT-------IKNLEIQKEGKYIY-FVVEANGFLYKMVRTIVGTLLEIGR 208
Query: 219 GNEKPEIIQQLVD 231
G +I++L++
Sbjct: 209 GKMDVYLIRKLLE 221
>gi|375292434|ref|YP_005126973.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae INCA
402]
gi|371582105|gb|AEX45771.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae INCA
402]
Length = 288
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED------KEKSSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK +IED + GRTD
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD-------LRTVQK--IIEDTLTLVLQRPIDLTVAGRTD 58
Query: 58 SGVSAFCQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A QV + + L + D L ++ L +P D+++ S VP ++ AR
Sbjct: 59 AGVHATGQVAHFDVDPAALETRSIAGDPARL--IRRLARLMPDDVRIHNMSFVPAEFDAR 116
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P+ L DI AM AA L+G HDF CK
Sbjct: 117 FSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQTAADALIGMHDFAAFCKYRE 176
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G + + T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 177 GASTIRDLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEG 228
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 229 RRADGFTEHLLGETK--RSSSIPVAAACGLSLVGVDY 263
>gi|224825086|ref|ZP_03698192.1| tRNA pseudouridine synthase A [Pseudogulbenkiania ferrooxidans
2002]
gi|224602757|gb|EEG08934.1| tRNA pseudouridine synthase A [Pseudogulbenkiania ferrooxidans
2002]
Length = 262
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 107/255 (41%), Gaps = 48/255 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G + G+Q Q NT+ L AL + GRTD+GV A
Sbjct: 3 VALGVEYDGRAFAGWQSQPHG-NTVQDKLNLALSHIAC----APINTVAAGRTDAGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + E + E +++ +N++LP DI VV V E++ ARF R+
Sbjct: 58 MQVVHFDV---------EVERPENAWVRGVNSHLPADIAVVWAKQVDEEFHARFSAFSRS 108
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVV 164
Y Y W+ Q LD++AM +AA +L+G HDF + + + V
Sbjct: 109 YSYFLLTHPVRSCLLAGKVGWYHQP-LDVEAMREAAAHLLGRHDFSSFRAAECQAKSPVK 167
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ +RL H F++ + FL H +R I+ L VG+G PE
Sbjct: 168 HLQRLDIHEA--------------DGFIRFDLLADAFLHHMVRNIVGALVYVGKGTLSPE 213
Query: 225 IIQQLVDIEKYPRKP 239
+ L+ P
Sbjct: 214 DMVDLLSARDRRHAP 228
>gi|418020553|ref|ZP_12659801.1| pseudouridylate synthase I [Candidatus Regiella insecticola R5.15]
gi|347604092|gb|EGY28810.1| pseudouridylate synthase I [Candidatus Regiella insecticola R5.15]
Length = 281
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 120/271 (44%), Gaps = 48/271 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G NY G+Q Q + +++ L AL K + D + F C GRTD+GV A
Sbjct: 7 IALGIEYSGSNYSGWQRQKDA-SSVQGCLENALSK---VADHPVTVF-CAGRTDAGVHAT 61
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV S E + +N NLP+DI V VPE + ARF L R
Sbjct: 62 GQVVHFTTHSM---------RPEHAWTMGVNANLPQDIAVRWVKSVPEGFHARFSALARC 112
Query: 124 YKYWFPQ--------AG--------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y AG LD M +AAQ+L+G HDF +FR
Sbjct: 113 YRYIIFNHCYRSAILAGGISHYHLPLDEQKMARAAQHLLGEHDF------------TSFR 160
Query: 168 RLVTHAGVTSAWQNV-QFNDSHHNI-CEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
L + + +NV Q N S + I++ FL H +R I+ L VG G + +
Sbjct: 161 ALQCQS--KTPLRNVQQINISRYGAYIVVEIKANAFLHHMVRNIVGSLIEVGCGRQNEDW 218
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
++QL+ ++ RK + E L L ++
Sbjct: 219 LKQLLALKD--RKQAAATAKAEGLYLVAVDY 247
>gi|345021300|ref|ZP_08784913.1| tRNA pseudouridine synthase A [Ornithinibacillus scapharcae TW25]
Length = 250
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 107/248 (43%), Gaps = 42/248 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M + I Y G N++G+Q+Q T+ L K L+K + GRTD+GV
Sbjct: 1 MPIVKCTIAYDGTNFNGYQVQPGK-RTVQGELEKVLEK---VHKGISVRVHASGRTDTGV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q T+ ++LT PG + K LN LP DI ++ E + AR+D +
Sbjct: 57 HAKGQ--TIHFETELTIPGNS-------WKKALNALLPNDIYILDSEIAQESFHARYDVV 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y+ FP L+++A+ +A L GTHDF
Sbjct: 108 EKEYRYYILMKQEPDIFNRHYIHHFPYP-LNVEAIQEACTELEGTHDFTTFSS---AKAT 163
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
V ++ T V+ N + EF R GFL++ +R ++ L VGQG P
Sbjct: 164 VKGDKIRTLFEVSCNQDNDRL--------EFIFRGSGFLYNMVRILVGTLLDVGQGRTHP 215
Query: 224 EIIQQLVD 231
I Q+++
Sbjct: 216 TDIHQMLE 223
>gi|169830000|ref|YP_001700158.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41]
gi|238688163|sp|B1HMV0.1|TRUA_LYSSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|168994488|gb|ACA42028.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41]
Length = 246
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 42/250 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR + + I Y G ++ G+Q+Q + T+ + + L ++ +EK GRTD+ V
Sbjct: 1 MRRLKIIISYDGTHFSGYQVQ-PGERTVQAEIERVL---AIMHKEEKVKVTASGRTDARV 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A Q TL + L P ++ Y K LN LPRDI+V++ V + AR+
Sbjct: 57 HATGQ--TLHFDTPLAIPTDK-------YRKALNVQLPRDIRVLSVEEVAHDFHARYSVT 107
Query: 121 FRNYKYWFPQAGL-----------------DIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y+Y + + D+ AM KAAQ ++GTHDF C N V
Sbjct: 108 GKRYRYIWSCEPIQNPFRRHYTVDTNGVKPDVVAMQKAAQAIIGTHDFSCFCAAN--TSV 165
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R VT ++QF + H I GFL++ +R I L+ VG
Sbjct: 166 QDKVRTVT---------SLQF-EWHGEELHMVIEGNGFLYNMVRIIAGTLWEVGIDRRTI 215
Query: 224 EIIQQLVDIE 233
E I +V E
Sbjct: 216 ENIALVVASE 225
>gi|15669871|ref|NP_248685.1| tRNA pseudouridine synthase A [Methanocaldococcus jannaschii DSM
2661]
gi|3915177|sp|Q59069.1|TRUA_METJA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|1500579|gb|AAB99697.1| pseudouridylate synthase I (truA) [Methanocaldococcus jannaschii
DSM 2661]
Length = 259
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 128/276 (46%), Gaps = 42/276 (15%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
LKI Y G + FQ Q T+ LL AL++T + +K GRTD GVSA
Sbjct: 4 LKIAYDG--RYSFQ-QQPHKQTVCDILLDALEETGFLA--KKKVIYSGGRTDKGVSALGN 58
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLP-RDIKVVAWSPVPEKYSARFDCLFRNY 124
V ++++ + P L +N L + I V+ + + E ++ R+Y
Sbjct: 59 FVVVELKKE-------------PILSYINAKLKDKGIWVLGYREIDEIPKVKY----RHY 101
Query: 125 KYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQF 184
+Y P G D+DA+ + A+ ++GTH F NL K + R + + + + +++
Sbjct: 102 RYILPNIGYDVDAIKEGAKKMIGTHSFHNLSKRD---------RTKEKSPIRTIY-DIKI 151
Query: 185 NDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMV 244
+++ + +I + FLW+ +R I+ L LVG+G + E I +L+D P +P
Sbjct: 152 SENEFYLT-VDIIGESFLWNMVRKIVGALDLVGRGKKPVEWIDKLLDENHREGVPTFP-- 208
Query: 245 RGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWS 280
E L L + D + + YD ++ +R E W
Sbjct: 209 -PEGLILVEAKVD-IEYIYD----NYSIRKFKEYWG 238
>gi|257865435|ref|ZP_05645088.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257871770|ref|ZP_05651423.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257875038|ref|ZP_05654691.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|325569125|ref|ZP_08145372.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC
12755]
gi|420262845|ref|ZP_14765486.1| tRNA pseudouridine synthase [Enterococcus sp. C1]
gi|257799369|gb|EEV28421.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257805934|gb|EEV34756.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257809204|gb|EEV38024.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|325157583|gb|EGC69741.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC
12755]
gi|394770602|gb|EJF50406.1| tRNA pseudouridine synthase [Enterococcus sp. C1]
Length = 245
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 43/247 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q S+ TI + ++ + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYLGWQRLGDSEKTIQ----EKVEGVIKLLTGEEIEIVGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K +++ P + + N LP+DI V VPE++ AR+
Sbjct: 57 HARGQVANFKTTHQMSLPEMQ---------QFFNRYLPQDIVVNKIEEVPERFHARYHAK 107
Query: 121 FRNYKYWF-----------------PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ PQ LD++ M +AA+ L+GTHDF +
Sbjct: 108 GKQYSYYVWNNAIPSVFARNTSFHCPQP-LDLEKMQQAAEKLIGTHDFIGFSALKKSKK- 165
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R + +T ++ F + GFL +R + L +G G P
Sbjct: 166 -STVRTIDEITITP----------EGDLLRFTFKGNGFLHKMVRILTGTLIAIGDGTLPP 214
Query: 224 EIIQQLV 230
E+I Q++
Sbjct: 215 EVIDQVL 221
>gi|347539310|ref|YP_004846735.1| tRNA pseudouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345642488|dbj|BAK76321.1| tRNA pseudouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 262
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 107/255 (41%), Gaps = 48/255 (18%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G + G+Q Q NT+ L AL + GRTD+GV A
Sbjct: 3 VALGVEYDGRAFAGWQSQPHG-NTVQDKLNLALSHIAC----APINTVAAGRTDAGVHAL 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + E + E +++ +N++LP DI VV V E++ ARF R+
Sbjct: 58 MQVVHFDV---------EVERPENAWVRGVNSHLPADIAVVWAKQVGEEFHARFSAFSRS 108
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNGVV 164
Y Y W+ Q LD++AM +AA +L+G HDF + + + V
Sbjct: 109 YSYFLLTHPVRSCLLAGKVGWYHQP-LDVEAMREAAAHLLGRHDFSSFRAAECQAKSPVK 167
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ +RL H F++ + FL H +R I+ L VG+G PE
Sbjct: 168 HLQRLDIHEA--------------DGFIRFDLLADAFLHHMVRNIVGALVYVGKGTLSPE 213
Query: 225 IIQQLVDIEKYPRKP 239
+ L+ P
Sbjct: 214 DMVDLLSARDRRHAP 228
>gi|431740872|ref|ZP_19529781.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
gi|430602507|gb|ELB40071.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
Length = 247
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q D TI + K L + E+ GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMT----NEEIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S++ + +N LPRDI + +PE++ AR++ +
Sbjct: 57 HARGQVANFKTNSEIGLA---------EMIDFMNRYLPRDIVIKRIEEMPERFHARYNAV 107
Query: 121 FRNYKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y +FPQ LD+D ++ A + L+GTHDF
Sbjct: 108 GKKYSYYVWNNVIPSAFERNHSFYFPQE-LDMDKLNAACEKLMGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T + + + F GFL+ +R I+ L +G G
Sbjct: 155 IGFSALKKSKKSTVRTIDELAIERKGEMLHFTFVGDGFLYKMVRIIIGTLLEIGTGAMPI 214
Query: 224 EIIQQLVD 231
E I ++ +
Sbjct: 215 ETIDEIFE 222
>gi|422348331|ref|ZP_16429224.1| tRNA pseudouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
gi|404659413|gb|EKB32264.1| tRNA pseudouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
Length = 268
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 42/243 (17%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y+G ++G+QIQ ++ L AL+ + K+ C GRTD+GV A
Sbjct: 3 IALGIEYRGTGFNGWQIQPDCP-SVQQALEDALETFLQV----KTPTMCAGRTDTGVHAM 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV+++ ++D E +++ LN LP + V V + + ARF R
Sbjct: 58 QQVVSIET---------QADRPERSWVRGLNTYLPPGVAVRWARLVDDDFHARFSARSRT 108
Query: 124 YKYWF---PQAG-------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+YW P LD++ M + A LVG HDF +FR
Sbjct: 109 YEYWIYNDPVRSPILDDLTGWVFRPLDVERMREGAACLVGEHDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
A + + I + FL H +R I+ L VG G EKPE ++
Sbjct: 157 ASECQASGPVRTIRRLELERRGRLIGVRIEANAFLQHMVRNIVGTLIYVGTGREKPEWVE 216
Query: 228 QLV 230
+++
Sbjct: 217 EVL 219
>gi|376287029|ref|YP_005159595.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae BH8]
gi|371584363|gb|AEX48028.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae BH8]
Length = 288
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 45/277 (16%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEK------SSFACCGRTD 57
I L + Y G ++HG+ Q SD L+ +QK +IED K GRTD
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD-------LRTVQK--IIEDTLKLVLQRPIDLTVAGRTD 58
Query: 58 SGVSAFCQVVTLKIR-SKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
+GV A Q+ + + L + D L ++ L +P D+++ S VP ++ AR
Sbjct: 59 AGVHATGQIAHFDVDPAALETRSIAGDPARL--IRRLARLMPDDVRIHNMSFVPAEFDAR 116
Query: 117 FDCLFRNYKYWF---PQAGL--------------DIDAMHKAAQYLVGTHDFRNLCKMNV 159
F L R+Y Y P+ L DI AM AA L+G HDF CK
Sbjct: 117 FSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQTAADALIGMHDFAAFCKYRE 176
Query: 160 GNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
G + + T W +V + E ++ + F W +R ++ +VG+G
Sbjct: 177 GASTIRDLQEFT-------WHDVS-TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEG 228
Query: 220 NEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
+ L+ K R P+ L+L ++
Sbjct: 229 KRADGFTEGLLGETK--RSSAIPVAAACGLSLVGVDY 263
>gi|356960566|ref|ZP_09063548.1| tRNA pseudouridine synthase A [gamma proteobacterium SCGC
AAA001-B15]
Length = 247
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 114/270 (42%), Gaps = 55/270 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G ++HG+QIQ + T+ + AL K + D F C GRTD+GV A
Sbjct: 3 IALGVEYLGTDFHGWQIQGNGLRTVQGVVELALSK---VADHSVRVF-CSGRTDAGVHAK 58
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QV+ + S S +L N NLP D+ V + + ARFD R
Sbjct: 59 EQVIHFETDSIRDSSA---------WLFGGNVNLPSDVNFTWVKEVSDDFHARFDAYARL 109
Query: 124 YKY-----------------WFPQAGLDIDAMHKAAQYLVGTHDFR----NLCKMNVGNG 162
Y+Y W P+A LDI M KAA +L+G HDF NLC+
Sbjct: 110 YEYKIHNHPIRSSLKANYNLWEPRA-LDIKKMRKAADFLLGEHDFSAFRANLCQAK---- 164
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
++++ + I I++ FL H +R I+ L +G+ ++
Sbjct: 165 -----------SPIKTLESIEIIKTDDTIL-IKIKANAFLRHMVRNIVGTLLKIGR--DE 210
Query: 223 PEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
E+ L +E RK P EP LY
Sbjct: 211 REVDWMLSVLESKDRKQAGPT--AEPQGLY 238
>gi|424758982|ref|ZP_18186655.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
gi|402405403|gb|EJV37995.1| tRNA pseudouridine synthase A [Enterococcus faecalis R508]
Length = 277
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 101/246 (41%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 87
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 88 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 138
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 139 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 185
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T+ + + + +F GFL +R ++ L +G G ++
Sbjct: 186 IGFSALKKTKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 245
Query: 224 EIIQQL 229
II +L
Sbjct: 246 AIIDEL 251
>gi|453075587|ref|ZP_21978373.1| tRNA pseudouridine synthase TruA [Rhodococcus triatomae BKS 15-14]
gi|452763013|gb|EME21300.1| tRNA pseudouridine synthase TruA [Rhodococcus triatomae BKS 15-14]
Length = 262
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 19/193 (9%)
Query: 45 KEKSSFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVV 104
++ GRTD+GV A QV I S+ E D+ ++ L LP D++V
Sbjct: 14 RQPVQLTVAGRTDAGVHASGQVAHCDIGSRRDGDLSEHLDDPDRLVRRLARFLPPDVRVT 73
Query: 105 AWSPVPEKYSARFDCLFRNYKYWFPQA-----------------GLDIDAMHKAAQYLVG 147
A PVP ++ ARF + R+Y+Y A LD+DAM A+ L+G
Sbjct: 74 AIGPVPAEFDARFSAIRRHYEYRITTARYGAEPLRARDTVSVPKKLDLDAMRAASHALLG 133
Query: 148 THDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIR 207
HDF C+ G R L V S +V+ S I + + F W +R
Sbjct: 134 LHDFAAFCRRR--EGATTVRDLQRFDWVRSDENSVRSAGSGGEILTAFVSADAFCWSMVR 191
Query: 208 CIMSVLFLVGQGN 220
++ + VG+G
Sbjct: 192 SLVGAVLAVGEGR 204
>gi|257417873|ref|ZP_05594867.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
gi|257159701|gb|EEU89661.1| tRNA pseudouridine synthase [Enterococcus faecalis T11]
Length = 246
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 47/248 (18%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTC--LIEDKEKSSFACCGRTDS 58
MR I L I Y G Y G+Q +S+ TI + L + LIE GRTD+
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGELIE------IIGSGRTDA 54
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
G A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 55 GTHARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYN 105
Query: 119 CLFRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN 161
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 106 ATGKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF---------- 154
Query: 162 GVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ F L T+ + + + +F GFL +R ++ L +G G +
Sbjct: 155 --IGFSALKKTKKSTTRTIEKITIERNGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTK 212
Query: 222 KPEIIQQL 229
+ II +L
Sbjct: 213 ELAIIDEL 220
>gi|119471543|ref|ZP_01613957.1| tRNA pseudouridine synthase A [Alteromonadales bacterium TW-7]
gi|119445486|gb|EAW26772.1| tRNA pseudouridine synthase A [Alteromonadales bacterium TW-7]
Length = 264
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 105/252 (41%), Gaps = 52/252 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+AL + Y G Y G+Q Q S N++ + KAL C C GRTD+GV
Sbjct: 3 VALGVEYNGARYSGWQRQ-SHVNSVQQEVEKALSSIC----NHPVEIVCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKM-LNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
QVV E + E+ M +N LP+DI + PV E + ARF R
Sbjct: 58 GQVVHF----------ETNASREMVAFTMGMNTLLPKDIAIRFAQPVVEDFHARFSATAR 107
Query: 123 NYKYW---FPQAG-------------LDIDAMHKAAQYLVGTHDFRNL----CKMNVGNG 162
Y+Y +P G LD M +A Q+L+G HDF + C+ N
Sbjct: 108 RYRYVIYNYPYRGAVMNEGVTHFHHKLDEKVMQEACQHLIGEHDFTSFRALHCQANTA-- 165
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
+R + H V V +I++ FL H +R I L +G +
Sbjct: 166 ----KRTIHHLSVQRQGDYVV----------IDIKANAFLHHMVRNITGCLMDIGLHKHQ 211
Query: 223 PEIIQQLVDIEK 234
P +++L+D+++
Sbjct: 212 PVWLKELLDLKE 223
>gi|423125047|ref|ZP_17112726.1| tRNA pseudouridine synthase A [Klebsiella oxytoca 10-5250]
gi|376400492|gb|EHT13105.1| tRNA pseudouridine synthase A [Klebsiella oxytoca 10-5250]
Length = 270
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 108/252 (42%), Gaps = 60/252 (23%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q ++ L KAL + E + C GRTD+GV
Sbjct: 12 IALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVA----NEPINVFCAGRTDAGVHGT 66
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV + R++ + + +N NLP DI V PVP+ + ARF R
Sbjct: 67 GQVVHFETRAQ---------RQDAAWTLGVNANLPGDIAVRWVKPVPQDFHARFSATARR 117
Query: 124 YK-------------------YWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
Y+ Y+ P LD + M +AAQ L+G +DF
Sbjct: 118 YRYVIYNHRLRPAVLSRGVTHYYLP---LDAERMQRAAQCLLGENDF------------T 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEF------NIRSQGFLWHQIRCIMSVLFLVGQ 218
+FR + + + W+NV H N+ + +I++ F+ H +R I+ L VG
Sbjct: 163 SFRAVQCQS--RTPWRNVM----HINVTRYGAYVVVDIKANAFVHHMVRNIVGSLMEVGA 216
Query: 219 GNEKPEIIQQLV 230
GN+ I L+
Sbjct: 217 GNQPESWIADLL 228
>gi|262276338|ref|ZP_06054147.1| tRNA pseudouridine synthase A [Grimontia hollisae CIP 101886]
gi|262220146|gb|EEY71462.1| tRNA pseudouridine synthase A [Grimontia hollisae CIP 101886]
Length = 264
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 113/275 (41%), Gaps = 56/275 (20%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL + Y G ++G+Q Q ++ HL KAL K + C GRTD+GV
Sbjct: 3 IALGVEYDGSQFYGWQRQREVP-SVQEHLEKALSKIA----NQPVEVQCAGRTDAGVHGT 57
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
QVV I E + +N +LP I V VP+++ ARF R
Sbjct: 58 GQVVHFDI---------EGSRPLRAWTMGVNTHLPDTIAVRWAKEVPDEFHARFSATARR 108
Query: 124 YKYWF------P----------QAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y P LD MH+A QYL+G +DF +FR
Sbjct: 109 YRYIIYNHALRPGILRHGVSHYHGELDETLMHEAGQYLLGENDF------------TSFR 156
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICE------FNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ + S W+NV H N+ +I++ F+ H +R I L +VG+ +
Sbjct: 157 AVQCQS--KSPWRNVH----HINVTRQGRFVIIDIKANAFVHHMVRNITGSLIVVGRKEQ 210
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF 256
KPE I+ L +E R + E L L E+
Sbjct: 211 KPEWIKWL--LEAKDRNLAAATAKAEGLYLVEVEY 243
>gi|302670312|ref|YP_003830272.1| tRNA pseudouridine synthase A [Butyrivibrio proteoclasticus B316]
gi|302394785|gb|ADL33690.1| tRNA pseudouridine synthase A TruA2 [Butyrivibrio proteoclasticus
B316]
Length = 265
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 111/265 (41%), Gaps = 39/265 (14%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
I Y G YHG++ + + TI L L + E + + GRTD+GV A
Sbjct: 24 ISYDGTRYHGWEKKPDLEMTIQGKLEGVLNRMIGAEGTGEVNLIGAGRTDAGVHARAMTA 83
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKY- 126
+ + + L+ +S +N LP DI V +++ AR++ + + Y+Y
Sbjct: 84 SAVLDTHLSEAEIQS---------YMNTYLPEDISVNEVKVCSDRFHARYNAIGKTYRYT 134
Query: 127 -WFPQAG----------LD----IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
W+ LD +D M KAA+ L+G HDFR+ C GN + +
Sbjct: 135 CWYGDGKPVFDRKYVTVLDREPNVDMMRKAAELLIGEHDFRSFC----GNSKMKKSTVRV 190
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ N++ N N F GFL + +R + L VG GN PE IQ +
Sbjct: 191 LDTI-----NIEKNG---NYIRFYFHGNGFLQNMVRILTGTLLEVGYGNISPEKIQDI-- 240
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEF 256
++ RK P R E L + ++
Sbjct: 241 LKACDRKKAGPTARPEGLCMMKVDY 265
>gi|55379749|ref|YP_137599.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049]
gi|62901222|sp|Q5UXW0.1|TRUA_HALMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|55232474|gb|AAV47893.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049]
Length = 275
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 106/274 (38%), Gaps = 45/274 (16%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKE--KSSFACCGRTDSGVSA 62
A ++ Y G YHGFQ Q D T+ L AL + + E E +A GRTD+GVSA
Sbjct: 3 AYRVAYDGQPYHGFQRQPDVD-TVEGRLRSALVRLGVCERGEGLPDRYAAAGRTDAGVSA 61
Query: 63 FCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFR 122
Q V + L+ N LP D++V A + VPE + A D R
Sbjct: 62 RTQTVAFDAPAWLSP-------------AAFNGELPNDVRVWASADVPEDFHATHDAAER 108
Query: 123 NYKYWFPQAGLDIDAMH----------KAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
Y Y+ A D D A L GTHDF NL G T
Sbjct: 109 TYTYYL-YAPADADRPEHEPVDDGRWADAVDALAGTHDFHNLTTDETG----------TE 157
Query: 173 AGVTSAW-QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
V W ++ QF + + GF +R ++S+ V G+ + +++
Sbjct: 158 RTVAIDWTRDGQF-------LVVQLTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILS 210
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDE 265
E P EPL L + N+++ DE
Sbjct: 211 PEPVSGPDGVPPAPPEPLVLTDVRYPNVSFTRDE 244
>gi|226322882|ref|ZP_03798400.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758]
gi|225208668|gb|EEG91022.1| tRNA pseudouridine synthase A [Coprococcus comes ATCC 27758]
Length = 256
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 108/256 (42%), Gaps = 42/256 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G NY G+QIQ + TI L KA+ K E+ RTDSGV
Sbjct: 9 MRRIRLTVAYDGTNYCGWQIQPNGI-TIEEVLNKAICKLT----GEEIQVIGASRTDSGV 63
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A + S++ P E + LN LP+DI VV V + R+
Sbjct: 64 HARGNIAVFDTESRI--PAER-------FSYALNQRLPKDIVVVKSDEVDLNWHPRYQDT 114
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
+ Y+Y +F LD+ M + A YL G HDF C + N
Sbjct: 115 LKTYEYHIINTKVPIPTERLYNYFVSFDLDVGQMRRGAAYLEGEHDFAPFCCIRT-NAKT 173
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + ++Q S +I I GFL++ +R I VL VG+G +PE
Sbjct: 174 TVRTIT----------DLQILQSGEHIT-IRITGNGFLYNMVRIIAGVLVRVGRGFYEPE 222
Query: 225 IIQQLVDIEKYPRKPV 240
+++L++ + R+ V
Sbjct: 223 KVKELLEGGERTREAV 238
>gi|303237649|ref|ZP_07324209.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN]
gi|302482101|gb|EFL45136.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN]
Length = 255
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M+ +K Y G NYHG+QIQ N I+ + + L+K + K S GRTD+GV
Sbjct: 1 MQRYFIKFSYDGTNYHGWQIQP---NGIS--VQEVLEKALSTLLRTKMSVTGAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V + + D +L Y LN LPRD+ V++ V + ARF
Sbjct: 56 HARLMVAHFDWEAPI-------DGQQLAY--KLNRMLPRDVSVISVEAVENELHARFSAT 106
Query: 121 FRNYKYW-------FPQA-------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
R Y Y+ F +A LD + M++AA+YL+G DF+ CK N
Sbjct: 107 SRTYHYYMHRGRNPFSRAYSYEMPYELDFERMNEAAKYLIGERDFKCFCKAGGDNK---- 162
Query: 167 RRLVTHAGVTSA-WQNVQFNDSHHNICE-----FNIRSQGFLWHQIRCIMSVLFLVGQGN 220
T +T A WQ+ + H + F I + FL + +R ++ L VG+G
Sbjct: 163 ---TTICNLTEARWQHCNTEIAIHEAEKAEEWCFVITANRFLRNMVRAVVGTLVEVGRGR 219
Query: 221 EKPEIIQQLVD 231
+ +++VD
Sbjct: 220 ITIDEFRKIVD 230
>gi|221134792|ref|ZP_03561095.1| tRNA pseudouridine synthase A [Glaciecola sp. HTCC2999]
Length = 264
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 52/273 (19%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IA+ + Y G +++G+Q Q DN + + +AL+ EK + C GRTD+GV A
Sbjct: 5 IAMAVEYYGADFYGWQRQ---DNVPS--VQQALEDAASFVADEKVNIICSGRTDAGVHAT 59
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRN 123
Q+V K +K +E + + P I V VP+ + ARF R
Sbjct: 60 YQIVNFKTSAK---------RDEKAWTLGVTTKTPDAIAVKWAVEVPDTFHARFSATARR 110
Query: 124 YKYWF-----PQA-----------GLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFR 167
Y+Y P A LD MH+AAQ LVG HDF +FR
Sbjct: 111 YRYIIYNHRVPPAILAKGLTHCYLPLDAQKMHEAAQVLVGEHDF------------TSFR 158
Query: 168 RLVTHAGVTSAWQNVQFNDSHHNICEF---NIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ + + ++N+ F + + E+ +I++ FL H +R I L L+G G +
Sbjct: 159 AALCQS--KTPFRNIHFVNV-QRVGEYVIIDIKANAFLHHMVRNIAGSLMLIGAGEQPLS 215
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+Q++++I+ + V +P LY + D
Sbjct: 216 WLQEILEIKDRTQA----GVTAKPNGLYFVDVD 244
>gi|257064823|ref|YP_003144495.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476]
gi|256792476|gb|ACV23146.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476]
Length = 271
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 33/273 (12%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A K+ Y G + GF Q D + + L+ + + C GRTD+GV
Sbjct: 15 RTLACKVAYDGAPFAGFARQAECDRVMT--VQGELEHALRVLYRRDVRTTCAGRTDAGVH 72
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QVV+ + + E + L+ LN + + V P +SARFD +
Sbjct: 73 AIGQVVSFDV-----TEDEFASRTPRSLLRSLNALVDDHMSVSVVEEKPFGFSARFDAKW 127
Query: 122 RNYKYWFPQAG-----------------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R Y+Y A LDIDAM++AA +L+G HDF++ C G
Sbjct: 128 REYRYRISTAAARPVLIMPLVWHLGGVDLDIDAMNRAAVHLIGEHDFKSFCVAASAVGKP 187
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R ++ + + + + FL +R I+ L VG+G PE
Sbjct: 188 TCRNVME-------LEVFEEEILGQQVATVRVVGNAFLHSMVRTIVGTLVEVGRGRRNPE 240
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
+ + +E R + L +H E++
Sbjct: 241 WVCDV--LEARNRGAAGQNAPAQGLVFWHVEYE 271
>gi|422730419|ref|ZP_16786811.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
gi|315149110|gb|EFT93126.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012]
Length = 246
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 100/246 (40%), Gaps = 43/246 (17%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L I Y G Y G+Q +S+ TI + L + E GRTD+G
Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMT----GEPIEIIGSGRTDAGT 56
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV K S LT+ L LN LP DI V + +PE++ AR++
Sbjct: 57 HARGQVANFKTTSSLTTT---------EMLSFLNRYLPGDIVVKEVTEMPERFHARYNAT 107
Query: 121 FRNYKYW-----------------FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
+ Y Y+ FP+A LD + M +A Q L+GTHDF
Sbjct: 108 GKQYSYYVWNSPIPNAFERYHSFHFPKA-LDQEKMEQACQKLIGTHDF------------ 154
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F L T+ + + +F GFL +R ++ L +G G ++
Sbjct: 155 IGFSALKKTKKSTTRTIEKITIERSGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKEL 214
Query: 224 EIIQQL 229
II +L
Sbjct: 215 AIIDEL 220
>gi|355683352|ref|ZP_09062938.1| tRNA pseudouridine synthase A [Clostridium citroniae WAL-17108]
gi|354810585|gb|EHE95226.1| tRNA pseudouridine synthase A [Clostridium citroniae WAL-17108]
Length = 249
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 40/238 (16%)
Query: 10 YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTL 69
Y G Y G+Q Q ++D TI L + L++ D+ GRTD+GV A QV
Sbjct: 9 YDGTRYDGWQKQGNTDRTIQGKLEEILKRL----DETPVEVRGSGRTDAGVHALAQVADF 64
Query: 70 KIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFP 129
++ ++ +P + ++ LN LP DI V PE++ +R + + + Y+Y
Sbjct: 65 RLNREM-APRD--------VMEYLNRYLPEDIGVWKIEKAPERFHSRLNAVRKTYRYQIE 115
Query: 130 --------QAG--------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHA 173
Q G LD+ AM +AA L GT DF++ C GN +
Sbjct: 116 MGPKKDVFQRGYYYGLGLELDVKAMEQAADLLTGTRDFKSFC----GNKKMK-------K 164
Query: 174 GVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
++VQF + GFL +R + L VG G +P + ++++
Sbjct: 165 STVRTLESVQFERIGDTKLHISFTGNGFLQQMVRILTGTLIEVGLGKRQPGDMSRILE 222
>gi|397774563|ref|YP_006542109.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrinema sp. J7-2]
gi|397683656|gb|AFO58033.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrinema sp. J7-2]
Length = 287
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 116/279 (41%), Gaps = 48/279 (17%)
Query: 5 ALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI--EDKEKSSFACCGRTDSGVS 61
A +I Y G +Y+GFQ Q D T+ + AL+ ++ E + + +A GRTD+GVS
Sbjct: 5 AFRIAYDGTDYYGFQRQPQPDIPTVEDAVFDALRALSVLDPEADKPAGYAAAGRTDAGVS 64
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A Q + L++ LT + LN LP D++ A + P+ + A
Sbjct: 65 ALAQTIALEVPDWLTP-------------RALNAELPADVRAWAAADAPDGFHATHHASR 111
Query: 122 RNYKY---------WFPQAGLDIDA-------MHKAAQYLVGTHDFRNLCKMNVGNGVVN 165
R Y Y P + +D+ A A L GTHD NL + N
Sbjct: 112 RAYTYHLYAPPADAAMPDSAVDVTAPTVDDERFRAACDALSGTHDIHNLTPDD-----RN 166
Query: 166 FRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEI 225
R +T A V+ + + I + + GF +R ++S++ VG G+
Sbjct: 167 TERSLTIA--------VERDGDYLVI---TVSAGGFARELVRRLVSLVRAVGAGDSPLAK 215
Query: 226 IQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD 264
I ++++ E P EPL L ++ +L + D
Sbjct: 216 IDRVLESEPLPGHEGIAPAPPEPLVLTAVDYPDLAFEID 254
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,431,215,421
Number of Sequences: 23463169
Number of extensions: 228475182
Number of successful extensions: 461130
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 4592
Number of HSP's that attempted gapping in prelim test: 446252
Number of HSP's gapped (non-prelim): 6133
length of query: 335
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 192
effective length of database: 9,003,962,200
effective search space: 1728760742400
effective search space used: 1728760742400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)