Query psy13081
Match_columns 335
No_of_seqs 222 out of 1256
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:56:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vs3_A TRNA pseudouridine synt 100.0 2.2E-76 7.4E-81 551.4 21.8 231 1-257 1-247 (249)
2 1dj0_A Pseudouridine synthase 100.0 1.2E-75 4.2E-80 550.4 26.1 234 1-263 3-252 (264)
3 2v9k_A Uncharacterized protein 90.9 1.3 4.3E-05 44.9 10.7 164 26-210 317-491 (530)
4 2hh8_A Hypothetical protein YD 32.9 25 0.00086 29.6 2.7 27 132-158 73-100 (149)
5 2l0c_A Putative membrane prote 12.2 81 0.0028 24.5 1.4 17 7-23 70-86 (97)
6 3rd4_A Uncharacterized protein 11.0 93 0.0032 24.3 1.4 16 7-22 71-86 (100)
7 1k8w_A TRNA pseudouridine synt 8.5 1E+03 0.035 22.1 7.9 47 132-178 115-176 (327)
8 2aus_C Pseudouridine synthase; 8.0 1.1E+03 0.038 21.7 8.0 62 113-178 99-163 (334)
9 2dwv_A Salvador homolog 1 prot 7.0 1.4E+02 0.0048 19.9 0.8 17 108-124 13-29 (49)
10 2qwu_A Intracellular growth lo 6.7 1.5E+02 0.0053 24.8 1.1 22 46-67 188-209 (211)
No 1
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-76 Score=551.38 Aligned_cols=231 Identities=27% Similarity=0.378 Sum_probs=209.1
Q ss_pred CccEEEEEEEeCCCcccceecCCCCCcHHHHHHHHHHHcccccCCCceeeeeeccCcccccccccEEEEEEccCCCCCCC
Q psy13081 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLTSPGE 80 (335)
Q Consensus 1 Mr~~al~iaY~G~~y~G~q~Q~~~~~TVE~~L~~AL~k~~~i~~~~~~~~~~agRTDkGVsA~~qVvs~~~~s~~~~~~~ 80 (335)
|+||+|.|+||||+|+|||+||+..+|||++|++||.+++ +++++.+||||||||||+|||++|++++.+++
T Consensus 1 M~r~~l~i~YdGt~y~GwQ~Q~~~~~TVq~~Le~AL~~~~-----~~v~~~~agRTDaGVHA~gqv~~f~~~~~~~~--- 72 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIG-----ALPKAVAAGRTDAGVHALAMPFHVDVESAIPV--- 72 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGGT-----BCSCCEESSCCBTTCEEEEEEEEEEECSCCCG---
T ss_pred CcEEEEEEEEECCCceeEeECCCCCCCHHHHHHHHHHHcC-----CcceEEEeccCcCCcCccccEEEEEECCCCCH---
Confidence 8999999999999999999999833899999999999983 57899999999999999999999999876542
Q ss_pred CCCCCchhHHHHHhcCCCCCEEEEEEEecCCCCCccccCCceEEEEEcCC----------------CCCcHHHHHHHHHh
Q psy13081 81 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ----------------AGLDIDAMHKAAQY 144 (335)
Q Consensus 81 ~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~AR~~~~~R~Y~Y~~~~----------------~~lDie~m~~A~~~ 144 (335)
..++..||+.||+||+|+++.+||++|||||+|++|+|+|+|+. .+||+++|++||+.
T Consensus 73 ------~~~~~~lN~~LP~dI~V~~~~~v~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ldi~~m~~aa~~ 146 (249)
T 1vs3_A 73 ------EKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSL 146 (249)
T ss_dssp ------GGHHHHHHHHSCTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCCcCEEEEEEEECCCCCCcccccccEEEEEEEccCCCCChhhCCeeEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999862 46999999999999
Q ss_pred ccccccccccccccccCCcccceEEEEEEEEEEcccccccCCCCCcEEEEEEEeCccchhhHHHHHHHHHHHhcCCCCHH
Q psy13081 145 LVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224 (335)
Q Consensus 145 ~~G~HDF~nF~k~~~~~~~~~~vR~I~~~~i~~~~~~~~~~~~~~~~~~i~I~G~sFL~~qVR~mVg~L~~vg~G~~~~~ 224 (335)
|+|+|||+|||+.+. ++++|+|++++|.+... ..++++.|+|+|+||||||||+|||+|++||+|+++++
T Consensus 147 l~G~HDF~~F~~~~~----~~~vR~I~~~~v~~~~~------~~~~~i~~~i~g~~FL~~mVR~mvG~l~~vg~g~~~~~ 216 (249)
T 1vs3_A 147 LLGRHNFLGFAKEET----RPGERELLEARLQVAEG------EAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPE 216 (249)
T ss_dssp HSEEEEGGGGCSSCC----SCCEEEEEEEEEEEEEC------SSSEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGG
T ss_pred hcCceeHHheecCCC----CCCCcEEEEEEEEeccc------cCCCEEEEEEEEChHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 999999999998653 58999999999985311 12378999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCcCCCCceeeecccC
Q psy13081 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257 (335)
Q Consensus 225 ~i~~lL~~~~~~~~p~~~~Ap~~gL~L~~v~Y~ 257 (335)
+|+++|+.+++ ....++|||+||+|++|.|+
T Consensus 217 ~i~~~L~~~~r--~~~~~~APa~GL~L~~v~Y~ 247 (249)
T 1vs3_A 217 SLKAILKTADR--RLAGPTAPAHGLYFVEAAYP 247 (249)
T ss_dssp GHHHHHHHCCG--GGSCCCCCGGGEEEEEEECC
T ss_pred HHHHHHhCCCc--ccCcCccCCCCcEEeeeeCC
Confidence 99999998753 34578999999999999996
No 2
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=100.00 E-value=1.2e-75 Score=550.37 Aligned_cols=234 Identities=30% Similarity=0.440 Sum_probs=212.3
Q ss_pred CccEEEEEEEeCCCcccceecCCCCCcHHHHHHHHHHHcccccCCCceeeeeeccCcccccccccEEEEEEccCCCCCCC
Q psy13081 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLTSPGE 80 (335)
Q Consensus 1 Mr~~al~iaY~G~~y~G~q~Q~~~~~TVE~~L~~AL~k~~~i~~~~~~~~~~agRTDkGVsA~~qVvs~~~~s~~~~~~~ 80 (335)
|++|+|+|+||||+|+|||+||+ .+|||++|++||.++. .+++.+.+||||||||||+|||++|++++.++
T Consensus 3 m~r~~l~i~YdGt~y~GwQ~Q~~-~~TVq~~Le~AL~~~~----~~~v~~~~agRTDaGVHA~gqv~~f~~~~~~~---- 73 (264)
T 1dj0_A 3 VYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVA----NEPITVFCAGRTDAGVHGTGQVVHFETTALRK---- 73 (264)
T ss_dssp CEEEEEEEEECCTTSSCSCCTTC-SSCHHHHHHHHHHHHH----TSCCCEEESSCCCTTCEEEEEEEEEEESCCCC----
T ss_pred ccEEEEEEEEeCCCceeEEECcC-CCCHHHHHHHHHHHHh----CCCeEEEEeccCCCCCchhhEEEEEEECCCCC----
Confidence 88999999999999999999998 5999999999999985 35789999999999999999999999987553
Q ss_pred CCCCCchhHHHHHhcCCCCCEEEEEEEecCCCCCccccCCceEEEEEcCC----------------CCCcHHHHHHHHHh
Q psy13081 81 ESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ----------------AGLDIDAMHKAAQY 144 (335)
Q Consensus 81 ~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~AR~~~~~R~Y~Y~~~~----------------~~lDie~m~~A~~~ 144 (335)
+..+...||+.||+||+|+++.+||++|||||+|++|+|+|+|+. .+||+++|++||+.
T Consensus 74 -----~~~~~~~lN~~LP~dI~V~~~~~V~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~M~~aa~~ 148 (264)
T 1dj0_A 74 -----DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQC 148 (264)
T ss_dssp -----HHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHHGG
T ss_pred -----HHHHHHHHHhhCCcCeEEEEEEeCCCCCCcccccccEEEEEEEccCCCCChhHcCceEeeCCCCCHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999863 36999999999999
Q ss_pred ccccccccccccccccCCcccceEEEEEEEEEEcccccccCCCCCcEEEEEEEeCccchhhHHHHHHHHHHHhcCCCCHH
Q psy13081 145 LVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224 (335)
Q Consensus 145 ~~G~HDF~nF~k~~~~~~~~~~vR~I~~~~i~~~~~~~~~~~~~~~~~~i~I~G~sFL~~qVR~mVg~L~~vg~G~~~~~ 224 (335)
|+|+|||+|||+.+. +.++++|+|++++|.+. .++++|+|+|+||||||||+|||+|++||+|+++++
T Consensus 149 l~G~HDF~~F~~~~~--~~~s~vR~I~~~~v~~~----------~~~i~~~i~g~~FL~~mVR~mvG~L~~vG~G~~~~~ 216 (264)
T 1dj0_A 149 LLGENDFTSFRAVQC--QSRTPWRNVMHINVTRH----------GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPES 216 (264)
T ss_dssp GCEEEECGGGCCTTC--CCSCCEEEEEEEEEEEE----------TTEEEEEEEESCCCTTHHHHHHHHHHHHHTTSSCTT
T ss_pred hcCcccHHHhccCCC--CCCCcEEEEEEEEEEEC----------CCEEEEEEEEchHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 999999999998753 34689999999999853 268999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCcCCCCceeeecccCCccccc
Q psy13081 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY 263 (335)
Q Consensus 225 ~i~~lL~~~~~~~~p~~~~Ap~~gL~L~~v~Y~~~~~~~ 263 (335)
+|+++|+.+++ +...++|||+||+|++|.|+ .+|..
T Consensus 217 ~i~~~L~~~~r--~~~~~~APa~GL~L~~V~Y~-~~~~~ 252 (264)
T 1dj0_A 217 WIAELLAAKDR--TLAAATAKAEGLYLVAVDYP-DRYDL 252 (264)
T ss_dssp HHHHHHHHCCG--GGSCCCCCSTTEEEEEEECC-GGGCC
T ss_pred HHHHHHhCCCc--ccCcCccCCCCcEEeeeccC-chhcc
Confidence 99999998753 34578999999999999995 45654
No 3
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=90.93 E-value=1.3 Score=44.93 Aligned_cols=164 Identities=11% Similarity=0.134 Sum_probs=100.9
Q ss_pred CcHHHHHHHHHHHcccccCCCceeeeeeccCccccccccc----EEEEEEccCCCCCCCCCCCCchhHHHHHhcCCCCCE
Q psy13081 26 NTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ----VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDI 101 (335)
Q Consensus 26 ~TVE~~L~~AL~k~~~i~~~~~~~~~~agRTDkGVsA~~q----Vvs~~~~s~~~~~~~~~~~~e~~~~~~LN~~LP~dI 101 (335)
.+||+.|-..+.+.. ....+.|++|||-|.-|--+|+ |+-+.=+...... ..+...+...+|.. -..|
T Consensus 317 ~SVee~I~~~i~~~f---~~~~~~Fh~sGREDvDVRmLG~GRPFvlEi~~P~r~~~~----~~dl~~le~~IN~~-~~~V 388 (530)
T 2v9k_A 317 SSVEELISDHLLAVF---KAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFT----SQEIKELQQKINNS-SNKI 388 (530)
T ss_dssp CCHHHHHHTTHHHHH---TCSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCCCC----HHHHHHHHHHHHTT-CSSE
T ss_pred CCHHHHHHHHHHHhc---CCCeEEEeecCCCCCceeecCCCCcEEEEecCccccccc----hhHHHHHHHHHhcc-CCcE
Confidence 699999988777764 2467999999999999999998 5555322211100 00112345678973 3559
Q ss_pred EEEEEEecCCCCCccc----cCCceEEEEEcC-CCCCcHHHHHHHHHhccccccccccccccc--cCCcccceEEEEEEE
Q psy13081 102 KVVAWSPVPEKYSARF----DCLFRNYKYWFP-QAGLDIDAMHKAAQYLVGTHDFRNLCKMNV--GNGVVNFRRLVTHAG 174 (335)
Q Consensus 102 rV~~~~~V~~~F~AR~----~~~~R~Y~Y~~~-~~~lDie~m~~A~~~~~G~HDF~nF~k~~~--~~~~~~~vR~I~~~~ 174 (335)
.|.....|+..=-.+. .-+.|+|+=.+. ..+++-+.++++.+ |.|---+.-- ...+ ......-.|+|++++
T Consensus 389 ~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~~~~v~~e~l~~~~~-l~~l~I~Qrt-P~RV~hRR~~~~R~R~I~~i~ 466 (530)
T 2v9k_A 389 QVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLND-IKDLKIDQKT-PLRVLHRRPLAVRARVIHFME 466 (530)
T ss_dssp EEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEESSCCCHHHHGGGGG-CCSEEEEEEC-CGGGTTTSCCCEEEEEEEEEE
T ss_pred EEEeeEEEcHHHHHHHhcccccCCeEEEEEEEEcCCCCHHHHHHHHh-cCCceeeccC-CeEEEEecCCCccceEEEEEE
Confidence 9999988863211111 123588875554 35678788887765 6552221110 0011 111112478999999
Q ss_pred EEEcccccccCCCCCcEEEEEEEeCccchhhHHHHH
Q psy13081 175 VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIM 210 (335)
Q Consensus 175 i~~~~~~~~~~~~~~~~~~i~I~G~sFL~~qVR~mV 210 (335)
+...+ ...+.+.|..+|=+| ||..|
T Consensus 467 ~~~~~---------~~~~~l~i~~eaGtY--IKelv 491 (530)
T 2v9k_A 467 TQYVD---------EHHFRLHLKTQAGTY--IKEFV 491 (530)
T ss_dssp EEEEE---------TTEEEEEEEECTTCC--HHHHH
T ss_pred EEEec---------CCEEEEEEEecCCCE--EEEEE
Confidence 98752 258999999998777 45544
No 4
>2hh8_A Hypothetical protein YDFO; structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Escherichia coli} SCOP: d.358.1.1
Probab=32.95 E-value=25 Score=29.57 Aligned_cols=27 Identities=7% Similarity=0.020 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHh-cccccccccccccc
Q psy13081 132 GLDIDAMHKAAQY-LVGTHDFRNLCKMN 158 (335)
Q Consensus 132 ~lDie~m~~A~~~-~~G~HDF~nF~k~~ 158 (335)
.-|.++++++++. ..|..||.-||+.-
T Consensus 73 ~~n~~~ik~~lk~hQaG~tdF~tFC~~~ 100 (149)
T 2hh8_A 73 SKDRHLIETTSNKLKSREITFQEYRRNL 100 (149)
T ss_dssp CCCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4589999999875 47999999999854
No 5
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=12.19 E-value=81 Score=24.46 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=14.6
Q ss_pred EEEEeCCCcccceecCC
Q psy13081 7 KILYQGFNYHGFQIQTS 23 (335)
Q Consensus 7 ~iaY~G~~y~G~q~Q~~ 23 (335)
++.|.|+.|-||++.+.
T Consensus 70 ~Lt~QGTRfl~Fer~~~ 86 (97)
T 2l0c_A 70 TLSYKGTRFVGFVSRTP 86 (97)
T ss_dssp EEEEETTEEEEEECSSC
T ss_pred EEEEeeeeEEeeecCCC
Confidence 57899999999998764
No 6
>3rd4_A Uncharacterized protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, propen_03304, unknown function; 2.90A {Proteus penneri}
Probab=11.00 E-value=93 Score=24.33 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=14.2
Q ss_pred EEEEeCCCcccceecC
Q psy13081 7 KILYQGFNYHGFQIQT 22 (335)
Q Consensus 7 ~iaY~G~~y~G~q~Q~ 22 (335)
.+.|.|+.|-||..++
T Consensus 71 ~Lt~QGTRFi~F~~~~ 86 (100)
T 3rd4_A 71 RLFMQGSRFVQFETDV 86 (100)
T ss_dssp EEEEETTEEEEEEECC
T ss_pred EEEEeeeEEEEeecCC
Confidence 4789999999999975
No 7
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=8.50 E-value=1e+03 Score=22.08 Aligned_cols=47 Identities=6% Similarity=-0.082 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHhcccccccc--ccccccccCC-------------cccceEEEEEEEEEEc
Q psy13081 132 GLDIDAMHKAAQYLVGTHDFR--NLCKMNVGNG-------------VVNFRRLVTHAGVTSA 178 (335)
Q Consensus 132 ~lDie~m~~A~~~~~G~HDF~--nF~k~~~~~~-------------~~~~vR~I~~~~i~~~ 178 (335)
.++.+.++++++.|.|+..=. .|+..+.+.+ .+.-..+|+++++...
T Consensus 115 ~~t~e~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~ 176 (327)
T 1k8w_A 115 TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH 176 (327)
T ss_dssp CCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhccceEEEeCChhheeccCCccHHHHHhCCCcccccceEEEEEEEEEEEe
Confidence 478999999999999988744 3443222110 1233568888888754
No 8
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=7.98 E-value=1.1e+03 Score=21.66 Aligned_cols=62 Identities=10% Similarity=-0.078 Sum_probs=38.0
Q ss_pred CCccccCCceEEEEEcCCC-CCcHHHHHHHHHhcccccccc--ccccccccCCcccceEEEEEEEEEEc
Q psy13081 113 YSARFDCLFRNYKYWFPQA-GLDIDAMHKAAQYLVGTHDFR--NLCKMNVGNGVVNFRRLVTHAGVTSA 178 (335)
Q Consensus 113 F~AR~~~~~R~Y~Y~~~~~-~lDie~m~~A~~~~~G~HDF~--nF~k~~~~~~~~~~vR~I~~~~i~~~ 178 (335)
+...+.-..|+|+=.+..+ .++.+.++++++.|.|+..=. .|+... ...-.++|+++++...
T Consensus 99 ~~~~l~~~~K~Y~~~~~lg~~~~~~~i~~~l~~f~G~i~Q~pP~~SA~k----~~~R~v~I~~~~~~~~ 163 (334)
T 2aus_C 99 VVQALLPAGKEYVALMHLHGDVPEDKIRAVMKEFEGEIIQRPPLRSAVK----RRLRTRKVYYIEILEI 163 (334)
T ss_dssp GGGGGTTCCEEEEEEEEESSCCCHHHHHHHHHHTSEEEECC----------------EEEEEEEEEEEE
T ss_pred hHHHhcccCcEEEEEEEECCCCCHHHHHHHHHhCcCeEEEeCCccccCc----CCcCCEEEEEEEEEEe
Confidence 3444445578887766433 478999999999999987532 122111 1223568999988764
No 9
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=7.01 E-value=1.4e+02 Score=19.87 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=12.4
Q ss_pred ecCCCCCccccCCceEE
Q psy13081 108 PVPEKYSARFDCLFRNY 124 (335)
Q Consensus 108 ~V~~~F~AR~~~~~R~Y 124 (335)
++|.+...|++...|.|
T Consensus 13 ~LP~GWe~~~d~~g~~Y 29 (49)
T 2dwv_A 13 GLPPGWERVESSEFGTY 29 (49)
T ss_dssp CCCTTEEEEEETTTEEE
T ss_pred CCCcCcEEEECCCCCEE
Confidence 45666777778888887
No 10
>2qwu_A Intracellular growth locus, subunit C; structure, IGLC, cell invasion; 1.65A {Francisella tularensis subsp}
Probab=6.70 E-value=1.5e+02 Score=24.83 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=16.9
Q ss_pred CceeeeeeccCcccccccccEE
Q psy13081 46 EKSSFACCGRTDSGVSAFCQVV 67 (335)
Q Consensus 46 ~~~~~~~agRTDkGVsA~~qVv 67 (335)
....+.++.-|||||--.|.+.
T Consensus 188 gslpvccaastdkgva~igyia 209 (211)
T 2qwu_A 188 GSLPVCCAASTDKGVAKIGYIA 209 (211)
T ss_dssp CEEEEECSSTTCEEEEECSCCC
T ss_pred CccceEEeeccCCCeeeeeeee
Confidence 4566788899999998777543
Done!