Your job contains 1 sequence.
>psy13081
MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV
SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL
FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQ
NVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPV
YPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIKDTVRES
KCTMGDLDINHLIEGEFSRPGRILSETGEVRSRND
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13081
(335 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 708 7.0e-70 1
UNIPROTKB|F1N5P3 - symbol:PUS3 "tRNA pseudouridine syntha... 691 4.4e-68 1
UNIPROTKB|Q3SX07 - symbol:PUS3 "tRNA pseudouridine(38/39)... 691 4.4e-68 1
UNIPROTKB|F1S759 - symbol:LOC100739830 "tRNA pseudouridin... 687 1.2e-67 1
UNIPROTKB|E2RGS6 - symbol:PUS3 "tRNA pseudouridine syntha... 686 1.5e-67 1
MGI|MGI:1914299 - symbol:Pus3 "pseudouridine synthase 3" ... 686 1.5e-67 1
UNIPROTKB|Q9BZE2 - symbol:PUS3 "tRNA pseudouridine(38/39)... 685 1.9e-67 1
UNIPROTKB|F1RVF1 - symbol:LOC100739830 "tRNA pseudouridin... 678 1.1e-66 1
ZFIN|ZDB-GENE-030131-9433 - symbol:pus3 "pseudouridylate ... 678 1.1e-66 1
RGD|1310757 - symbol:Pus3 "pseudouridylate synthase 3" sp... 677 1.3e-66 1
FB|FBgn0034703 - symbol:CG3045 species:7227 "Drosophila m... 587 2.9e-62 2
TAIR|locus:2009021 - symbol:AT1G34150 species:3702 "Arabi... 529 6.5e-51 1
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 523 2.8e-50 1
WB|WBGene00006473 - symbol:tag-124 species:6239 "Caenorha... 515 2.0e-49 1
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 502 4.7e-48 1
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 479 1.3e-45 1
UNIPROTKB|G4MKS9 - symbol:MGG_16154 "tRNA-pseudouridine s... 267 9.9e-35 2
DICTYBASE|DDB_G0288909 - symbol:pus3 "tRNA pseudouridylat... 361 4.1e-33 1
ASPGD|ASPL0000040109 - symbol:AN3170 species:162425 "Emer... 179 9.0e-33 4
UNIPROTKB|E1BUI0 - symbol:PUSL1 "tRNA pseudouridine synth... 158 7.7e-17 2
UNIPROTKB|Q9KTA4 - symbol:truA "tRNA pseudouridine syntha... 209 8.0e-17 1
TIGR_CMR|VC_0999 - symbol:VC_0999 "tRNA pseudouridine syn... 209 8.0e-17 1
UNIPROTKB|E9PRI9 - symbol:PUS3 "tRNA pseudouridine syntha... 195 3.4e-15 1
UNIPROTKB|F1NZ90 - symbol:PUS1 "tRNA pseudouridine syntha... 201 9.1e-14 1
TIGR_CMR|CBU_0892 - symbol:CBU_0892 "tRNA pseudouridine s... 168 1.2e-10 1
TIGR_CMR|CHY_2276 - symbol:CHY_2276 "tRNA pseudouridine s... 165 1.8e-10 1
UNIPROTKB|P07649 - symbol:truA "tRNA pseudouridine syntha... 166 2.7e-10 1
RGD|1311871 - symbol:Pus1 "pseudouridylate synthase 1" sp... 169 5.5e-10 1
UNIPROTKB|Q4KM92 - symbol:Pus1 "tRNA pseudouridine syntha... 169 5.5e-10 1
UNIPROTKB|F1RFR2 - symbol:PUS1 "tRNA pseudouridine syntha... 169 5.8e-10 1
UNIPROTKB|E1BDL3 - symbol:PUS1 "tRNA pseudouridine syntha... 168 7.6e-10 1
UNIPROTKB|G8JLB3 - symbol:PUS1 "tRNA pseudouridine syntha... 166 9.8e-10 1
UNIPROTKB|J9NVH5 - symbol:PUS1 "tRNA pseudouridine syntha... 166 1.1e-09 1
MGI|MGI:1929237 - symbol:Pus1 "pseudouridine synthase 1" ... 166 1.2e-09 1
UNIPROTKB|Q9Y606 - symbol:PUS1 "tRNA pseudouridine syntha... 166 1.2e-09 1
UNIPROTKB|E2QW32 - symbol:PUS1 "tRNA pseudouridine syntha... 166 1.3e-09 1
SGD|S000003031 - symbol:PUS2 "Mitochondrial tRNA:pseudour... 110 3.8e-09 2
ZFIN|ZDB-GENE-041212-26 - symbol:pus1 "pseudouridine synt... 160 5.6e-09 1
MGI|MGI:3047787 - symbol:Pusl1 "pseudouridylate synthase-... 111 2.7e-08 2
TIGR_CMR|ECH_0622 - symbol:ECH_0622 "tRNA pseudouridine s... 144 8.3e-08 1
TAIR|locus:2024397 - symbol:AT1G09800 species:3702 "Arabi... 99 1.0e-07 3
UNIPROTKB|F5GY32 - symbol:PUS1 "tRNA pseudouridine syntha... 126 1.6e-07 1
TAIR|locus:2077552 - symbol:AT3G06950 species:3702 "Arabi... 145 1.7e-07 1
UNIPROTKB|P65846 - symbol:truA "tRNA pseudouridine syntha... 144 1.7e-07 1
UNIPROTKB|F1PXJ5 - symbol:PUSL1 "tRNA pseudouridine synth... 129 1.8e-07 2
UNIPROTKB|J9P592 - symbol:PUSL1 "tRNA pseudouridine synth... 129 1.9e-07 2
TAIR|locus:2065748 - symbol:AT2G30320 species:3702 "Arabi... 132 1.4e-06 2
TIGR_CMR|DET_0504 - symbol:DET_0504 "tRNA pseudouridine s... 133 1.8e-06 1
FB|FBgn0038811 - symbol:CG4159 species:7227 "Drosophila m... 138 2.0e-06 1
UNIPROTKB|Q8N0Z8 - symbol:PUSL1 "tRNA pseudouridine synth... 112 2.2e-06 2
UNIPROTKB|A6QP68 - symbol:PUSL1 "tRNA pseudouridine synth... 113 2.9e-06 2
TIGR_CMR|NSE_0020 - symbol:NSE_0020 "tRNA pseudouridine s... 130 3.9e-06 1
UNIPROTKB|F1RJE9 - symbol:PUSL1 "tRNA pseudouridine synth... 108 4.9e-06 2
UNIPROTKB|F1LXZ7 - symbol:Pusl1 "tRNA pseudouridine synth... 112 5.7e-06 2
DICTYBASE|DDB_G0290987 - symbol:pus1 "tRNA pseudouridylat... 104 8.0e-06 2
UNIPROTKB|F5H1S9 - symbol:PUS1 "tRNA pseudouridine syntha... 131 8.9e-06 1
TIGR_CMR|GSU_2877 - symbol:GSU_2877 "tRNA pseudouridine s... 125 1.5e-05 1
WB|WBGene00004248 - symbol:pus-1 species:6239 "Caenorhabd... 122 0.00011 1
TAIR|locus:2012898 - symbol:AT1G20370 species:3702 "Arabi... 114 0.00011 2
UNIPROTKB|E9PNY6 - symbol:PUS3 "tRNA pseudouridine(38/39)... 100 0.00011 1
RGD|1559560 - symbol:Pusl1 "pseudouridylate synthase-like... 86 0.00015 2
POMBASE|SPCC126.03 - symbol:pus1 "tRNA pseudouridine synt... 105 0.00020 2
DICTYBASE|DDB_G0281619 - symbol:DDB_G0281619 "tRNA pseudo... 112 0.00024 2
UNIPROTKB|J3KTG4 - symbol:PUSL1 "tRNA pseudouridine synth... 96 0.00030 1
DICTYBASE|DDB_G0283061 - symbol:DDB_G0283061 "tRNA pseudo... 83 0.00030 2
FB|FBgn0083976 - symbol:CG34140 species:7227 "Drosophila ... 94 0.00041 2
TAIR|locus:2199726 - symbol:AT1G76120 species:3702 "Arabi... 110 0.00062 2
POMBASE|SPCC16C4.06c - symbol:SPCC16C4.06c "tRNA pseudour... 98 0.00094 2
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 144/307 (46%), Positives = 200/307 (65%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q ++ NTI L +AL+KT L++D++ S++ CGRTD GVS
Sbjct: 59 RHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVS 118
Query: 62 AFCQVVTLKIRSKLT-----------SPGEES-DDNELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV++L +RS L+ S G+ S + EL Y +LN LP DI+V+AW+PV
Sbjct: 119 AFGQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLAWAPV 178
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
+SARF CL R Y+Y+FP A LD+ MH AAQ VGTHDFRNLCKM+V NGV+NF+R
Sbjct: 179 EPDFSARFSCLKRTYRYFFPCADLDVALMHTAAQRYVGTHDFRNLCKMDVANGVINFQRT 238
Query: 170 VTHAGVTSAWQNVQFN-DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ A VT A + +C+F + Q FL+HQ+RC+M++LFL+GQ E PEII +
Sbjct: 239 ILSAQVTWADGGAESGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEIIDE 298
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLLSIKAT 287
L+D+EK PRKP Y M PL LY EF+N+ WHYD E++ +V L + W+ ++K
Sbjct: 299 LLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDREVQEFNVTH-LQQLWASYAVKTQ 357
Query: 288 MLGEMIK 294
+L M++
Sbjct: 358 VLHSMLR 364
>UNIPROTKB|F1N5P3 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
IPI:IPI00688075 UniGene:Bt.33259 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:DAAA02063102
Ensembl:ENSBTAT00000019065 Uniprot:F1N5P3
Length = 481
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 149/335 (44%), Positives = 211/335 (62%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 63 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS + G +S+ E+ Y +LN LP DI+V+AW+PV
Sbjct: 123 AFGQVISLDLRSHIPK-GRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 TSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V QN+ +C+F + Q FL+HQ+RC+M+VLFL+GQG EKPE+I +
Sbjct: 242 LSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLLSIKAT 287
L++IEK P+KP Y M PL LY +F+N+ W YD E++ +V L + W+ ++K
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH-LQQLWANHAVKTQ 360
Query: 288 MLGEMIK--DTVRESKCTMGDLDINHLIEGEFSRP 320
ML M++ D+V C G ++ +IE +P
Sbjct: 361 MLYSMLQGLDSVA-LPCGTGP-KMDGMIEWRNVKP 393
>UNIPROTKB|Q3SX07 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005634 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:BC104569 IPI:IPI00688075
RefSeq:NP_001029684.1 UniGene:Bt.33259 ProteinModelPortal:Q3SX07
STRING:Q3SX07 PRIDE:Q3SX07 GeneID:515824 KEGG:bta:515824 CTD:83480
HOGENOM:HOG000199032 HOVERGEN:HBG053769 InParanoid:Q3SX07
OrthoDB:EOG4B2SXG NextBio:20872016 Uniprot:Q3SX07
Length = 481
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 149/335 (44%), Positives = 211/335 (62%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 63 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS + G +S+ E+ Y +LN LP DI+V+AW+PV
Sbjct: 123 AFGQVISLDLRSHIPK-GRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 TSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V QN+ +C+F + Q FL+HQ+RC+M+VLFL+GQG EKPE+I +
Sbjct: 242 LSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLLSIKAT 287
L++IEK P+KP Y M PL LY +F+N+ W YD E++ +V L + W+ ++K
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH-LQQLWANHAVKTQ 360
Query: 288 MLGEMIK--DTVRESKCTMGDLDINHLIEGEFSRP 320
ML M++ D+V C G ++ +IE +P
Sbjct: 361 MLYSMLQGLDSVA-LPCGTGP-KMDGMIEWRNVKP 393
>UNIPROTKB|F1S759 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:NHAVKTH GeneTree:ENSGT00510000047444
EMBL:CU928873 RefSeq:XP_003482688.1 Ensembl:ENSSSCT00000016588
GeneID:100739830 KEGG:ssc:100739830 Uniprot:F1S759
Length = 479
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 149/341 (43%), Positives = 212/341 (62%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+++ +C+F + Q FL+HQ+RC+M+VLFL+GQG EKPE+I +L
Sbjct: 242 SAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLLSIKATM 288
++IEK P+KP Y M PL LY +F+N+ W YD E++ +V L + W+ ++K M
Sbjct: 302 LNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH-LQQLWANHAVKTQM 360
Query: 289 LGEMIK--DTVRESKCTMGDLDINHLIEGEFSRPGRILSET 327
L M++ D+V C G ++ +IE +P ++ +T
Sbjct: 361 LYSMLQGLDSVAVP-CGTGP-SMDGVIEWRNVKPA-VIKQT 398
>UNIPROTKB|E2RGS6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AAEX03003383 RefSeq:XP_536533.1
ProteinModelPortal:E2RGS6 Ensembl:ENSCAFT00000016731 GeneID:479397
KEGG:cfa:479397 NextBio:20854586 Uniprot:E2RGS6
Length = 480
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 143/307 (46%), Positives = 198/307 (64%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q +++NTI L AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTNNTIEEKLFDALTKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRVLAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R V
Sbjct: 182 SFSARFSCLERTYRYFFPRADLDIITMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTVL 241
Query: 172 HAGVTSAWQNV---QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q++ Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 FAQVELVGQSLDKEQWQEPFQ-LCQFEVVGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLLSIKAT 287
L++IEK P+KP Y M PL LY +F+N+ W YD E++ +V L + W+ ++K
Sbjct: 301 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDREVQEFNVTH-LQQLWANHAVKTH 359
Query: 288 MLGEMIK 294
ML M++
Sbjct: 360 MLYSMLQ 366
>MGI|MGI:1914299 [details] [associations]
symbol:Pus3 "pseudouridine synthase 3" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 MGI:MGI:1914299 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 UniGene:Mm.482285 GO:GO:0031119
KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH EMBL:AF266505
EMBL:AK079095 EMBL:BC029253 IPI:IPI00331619 RefSeq:NP_075781.3
UniGene:Mm.425574 ProteinModelPortal:Q9JI38 SMR:Q9JI38
STRING:Q9JI38 PhosphoSite:Q9JI38 PRIDE:Q9JI38
Ensembl:ENSMUST00000034615 GeneID:67049 KEGG:mmu:67049
UCSC:uc009oth.2 GeneTree:ENSGT00510000047444 InParanoid:Q9JI38
BRENDA:4.2.1.70 NextBio:323424 Bgee:Q9JI38 CleanEx:MM_PUS3
Genevestigator:Q9JI38 GermOnline:ENSMUSG00000032103 Uniprot:Q9JI38
Length = 481
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 144/319 (45%), Positives = 203/319 (63%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 64 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 123
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 124 AFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEP 183
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP+A LDI M+ AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 243
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 244 CAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 303
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLLSIKATM 288
++I+K P+KP Y M PL LY +F+N W YD E++ +V L + W+ ++K M
Sbjct: 304 LNIQKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVQEFNVTH-LQQLWANHAVKTHM 362
Query: 289 LGEMIK--DTVRESKCTMG 305
L M++ D+V + C G
Sbjct: 363 LYSMLQGLDSVMVT-CAAG 380
>UNIPROTKB|Q9BZE2 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:AF325689 EMBL:AK055702
EMBL:AK314251 EMBL:BC004822 EMBL:BC013427 IPI:IPI00306260
RefSeq:NP_112597.3 UniGene:Hs.660922 ProteinModelPortal:Q9BZE2
SMR:Q9BZE2 STRING:Q9BZE2 PhosphoSite:Q9BZE2 DMDM:126302589
PaxDb:Q9BZE2 PRIDE:Q9BZE2 DNASU:83480 Ensembl:ENST00000227474
Ensembl:ENST00000530811 GeneID:83480 KEGG:hsa:83480 UCSC:uc001qcy.2
GeneCards:GC11M125763 H-InvDB:HIX0010246 HGNC:HGNC:25461
HPA:HPA038040 neXtProt:NX_Q9BZE2 PharmGKB:PA134874048
InParanoid:Q9BZE2 OMA:NHAVKTH PhylomeDB:Q9BZE2 GenomeRNAi:83480
NextBio:72425 ArrayExpress:Q9BZE2 Bgee:Q9BZE2 CleanEx:HS_PUS3
Genevestigator:Q9BZE2 GermOnline:ENSG00000110060 Uniprot:Q9BZE2
Length = 481
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 143/319 (44%), Positives = 201/319 (63%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD-----------NELPYLKMLNNNLPRDIKVVAWSPVP 110
AF QV++L +RS+ G +S+D E+ Y +LN LP DI+++AW+PV
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVE 181
Query: 111 EKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLV 170
+SARF CL R Y+Y+FP+A LDI M AAQ VGTHDFRNLCKM+V NGV+NF+R +
Sbjct: 182 PSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTI 241
Query: 171 THAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
A V Q+ +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +
Sbjct: 242 LSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 301
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L++IEK P+KP Y M PL LY +F+N+ W YD+ + L + W+ ++K M
Sbjct: 302 LLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHM 361
Query: 289 LGEMIK--DTVRESKCTMG 305
L M++ DTV C +G
Sbjct: 362 LYSMLQGLDTV-PVPCGIG 379
>UNIPROTKB|F1RVF1 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444 OMA:CQVISID
Ensembl:ENSSSCT00000012144 Uniprot:F1RVF1
Length = 479
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 148/341 (43%), Positives = 211/341 (61%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E+++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS + D N E+ Y +LN LP DI+V+AW+PV
Sbjct: 122 AFGQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTIL 241
Query: 172 HAGVTSAWQNVQFN--DSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V Q+++ +C+F + Q FL+HQ+RC+M+VLFL+GQG EKPE+I +L
Sbjct: 242 SAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLLSIKATM 288
++IEK P+K Y M PL LY +F+N+ W YD E++ +V L + W+ ++K M
Sbjct: 302 LNIEKNPQKHQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVTH-LQQLWANHAVKTQM 360
Query: 289 LGEMIK--DTVRESKCTMGDLDINHLIEGEFSRPGRILSET 327
L M++ D+V C G ++ +IE +P ++ +T
Sbjct: 361 LYSMLQGLDSVAVP-CGTGP-SMDGVIEWRNVKPA-VIKQT 398
>ZFIN|ZDB-GENE-030131-9433 [details] [associations]
symbol:pus3 "pseudouridylate synthase 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 ZFIN:ZDB-GENE-030131-9433 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:BC049516 IPI:IPI00509994
RefSeq:NP_956361.1 UniGene:Dr.79340 ProteinModelPortal:Q7ZW97
PRIDE:Q7ZW97 GeneID:337487 KEGG:dre:337487 InParanoid:Q7ZW97
NextBio:20812266 ArrayExpress:Q7ZW97 Bgee:Q7ZW97 Uniprot:Q7ZW97
Length = 460
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 136/327 (41%), Positives = 204/327 (62%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL++ Y G+ Y GF +Q ++DNT+ L +AL KT LI+D++ S + CGRTD GVS
Sbjct: 58 RHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKLIQDRQTSCYHRCGRTDKGVS 117
Query: 62 AFCQVVTLKIRSK-------LTSPGE-----ESDDNELPYLKMLNNNLPRDIKVVAWSPV 109
AF QV+++ +RS +T P + ++ +ELPY+K+LN LP DI+++ W+PV
Sbjct: 118 AFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPHDIRILQWAPV 177
Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
+SARFDC R Y+Y+FP+ LD++ M +AA+ GTHDFRNLCKM+VGNGV+ F+R
Sbjct: 178 ESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDFRNLCKMDVGNGVLQFQRT 237
Query: 170 VTHAGVTSAW-QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQ 228
+ A V A + ++ H + F ++ L+HQ+RC+M++L L+GQ E PE+I Q
Sbjct: 238 ILSASVQPAQLPHPSVHNDPHQLFVFQVKGLALLYHQVRCMMALLLLIGQKLEAPEVIDQ 297
Query: 229 LVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATM 288
L+D+EK PRKP Y M PL LY F+ + W + E H+L H+ W ++K +
Sbjct: 298 LLDVEKNPRKPQYSMAVDYPLVLYDCHFEGVNWRNEIEEEIHILNTFHQHWVQNAVKTQI 357
Query: 289 LGEMIKDTVRESKCTMGDLDINHLIEG 315
L MI+ ++ + MG L L+EG
Sbjct: 358 LLGMIQG-LQNTSTEMGSLQC-WLMEG 382
>RGD|1310757 [details] [associations]
symbol:Pus3 "pseudouridylate synthase 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISO] [GO:0031119
"tRNA pseudouridine synthesis" evidence=IEA;ISO] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 RGD:1310757
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:BC158693 EMBL:CH474007
IPI:IPI00194825 RefSeq:NP_001101604.1 UniGene:Rn.22763
STRING:B0BN58 Ensembl:ENSRNOT00000017648 GeneID:315554
KEGG:rno:315554 UCSC:RGD:1310757 NextBio:669414
Genevestigator:B0BN58 Uniprot:B0BN58
Length = 479
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 144/319 (45%), Positives = 199/319 (62%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +ALKI Y G+ Y GF Q ++ NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 62 RHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRLVESRQTSNYHRCGRTDKGVS 121
Query: 62 AFCQVVTLKIRSKLTSPGEESDDN----------ELPYLKMLNNNLPRDIKVVAWSPVPE 111
AF QV++L +RS+ + D N E+ Y +LN LP DI+V+AW+P
Sbjct: 122 AFGQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRVLAWAPAEP 181
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+SARF CL R Y+Y+FP A LDI M+ AAQ VGTHDFRNLCKM+V NGV NF+R +
Sbjct: 182 SFSARFSCLERTYRYFFPCADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTIL 241
Query: 172 HAGVTSAWQNV--QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQL 229
A V + Q+ + +C+F + Q FL+HQ+RC+M++LFL+GQG EKPEII +L
Sbjct: 242 SAQVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDEL 301
Query: 230 VDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLLSIKATM 288
++IEK P+KP Y M PL LY +F+N W YD E+ +V L + W+ ++K M
Sbjct: 302 LNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVHEFNVTH-LQQLWANHAVKTHM 360
Query: 289 LGEMIK--DTVRESKCTMG 305
L M++ D+V + C G
Sbjct: 361 LYSMLQGLDSVMVT-CAAG 378
>FB|FBgn0034703 [details] [associations]
symbol:CG3045 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE013599 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444
EMBL:AY058376 RefSeq:NP_611646.1 UniGene:Dm.4296 SMR:Q9W282
STRING:Q9W282 EnsemblMetazoa:FBtr0071787 GeneID:37531
KEGG:dme:Dmel_CG3045 UCSC:CG3045-RA FlyBase:FBgn0034703
InParanoid:Q9W282 OMA:CQVISID OrthoDB:EOG4N5TCH GenomeRNAi:37531
NextBio:804123 Uniprot:Q9W282
Length = 499
Score = 587 (211.7 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 124/265 (46%), Positives = 167/265 (63%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R + LKI Y G++Y GF Q S++TI +L +AL +TCLIE + S++ CGRTD VS
Sbjct: 99 RHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALARTCLIESRATSNYHRCGRTDKEVS 158
Query: 62 AFCQVVTLKIRSKLTSPGEESD----DNELPYLKMLNNNLPRDIKVVAWSPVPEK-YSAR 116
AFCQV+++ +RSK P + D +E+ Y +LN LP++I+ VAW P+ YSAR
Sbjct: 159 AFCQVISIDLRSK-HPPESQLDPTALSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSAR 217
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT 176
FDC+ R Y+Y+FP+ LDI AM KA LV DFRN CKM+V NGV N+ R + A V
Sbjct: 218 FDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVE 277
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
+ Q N S +++ I++ FLWHQIRCIM+VL LVGQ E P +I L+D+E P
Sbjct: 278 ACDQTNHTN-SGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPGVISDLLDVESNP 336
Query: 237 RKPVYPMVRGEPLNLYHTEF-DNLT 260
KP Y G PLNL+ +F D+ T
Sbjct: 337 CKPQYTPAIGLPLNLFRCDFRDHTT 361
Score = 67 (28.6 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 253 HTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGEMIK 294
H E D W Y+E + ++ + +W+ S+K+TM+ +++
Sbjct: 392 HLERDLTAWIYNEENLQKLIENTQCEWTQFSVKSTMIRNVLQ 433
>TAIR|locus:2009021 [details] [associations]
symbol:AT1G34150 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K01855 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032 EMBL:AF360187 EMBL:AY040002
IPI:IPI00521240 RefSeq:NP_564438.1 UniGene:At.19010
ProteinModelPortal:Q9C5K6 SMR:Q9C5K6 STRING:Q9C5K6 PaxDb:Q9C5K6
PRIDE:Q9C5K6 EnsemblPlants:AT1G34150.1 GeneID:840314
KEGG:ath:AT1G34150 TAIR:At1g34150 InParanoid:Q9C5K6 OMA:KFIGEHD
PhylomeDB:Q9C5K6 ProtClustDB:CLSN2688258 ArrayExpress:Q9C5K6
Genevestigator:Q9C5K6 Uniprot:Q9C5K6
Length = 446
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 114/268 (42%), Positives = 161/268 (60%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIEDKEKSSFACCGRTDSGV 60
R +ALKI+Y G ++GF + + +I + KAL++T L+ DK+ S ++ CGRTD GV
Sbjct: 90 RYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGV 149
Query: 61 SAFCQVVTLKIRSKLTSP---------GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPE 111
S+ QV+ L +RS+L SP G + E Y+++LN LP DI+V+ WSP P
Sbjct: 150 SSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPI 209
Query: 112 KYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
+ ARF C R YKY+F + L++ AM A + +G HDFRN CKM+V N V + R VT
Sbjct: 210 DFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKFIGEHDFRNFCKMDVAN-VHCYTRRVT 268
Query: 172 HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
V S QN D +C F +R FLWHQIRC+++VLF++GQG E ++I L+D
Sbjct: 269 FFEV-SPCQNSHEGDQ---LCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLD 324
Query: 232 IEKYPRKPVYPMVRGEPLNLYHTEFDNL 259
+K PRKP Y + PL L EF+N+
Sbjct: 325 TKKTPRKPQYLLASEIPLVLRTCEFENV 352
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 116/307 (37%), Positives = 178/307 (57%)
Query: 1 MRPIALKILYQGFNYHGF--QIQTSSDNTIAHHLLKALQKTCLIEDK-EKSSFACCGRTD 57
MR +A K Y G+NY+G Q++ + T+ LKAL K LI++ E+ F+ CGRTD
Sbjct: 129 MRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTD 188
Query: 58 SGVSAFCQVVTLKIRSKLTSPGE---ESDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV+++ +RS +T + E DD E+ Y+ +LN NLP DIKV + P P+
Sbjct: 189 KGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSICLRPPPD- 247
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF CL R+Y+Y F + LDI+ M++ A+ G HDFRN CK++ + NF R +
Sbjct: 248 FDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVREIYQ 307
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ Q + + ++ C F+++ FLWHQ+RC++++LF +GQ E P II L+D
Sbjct: 308 S------QIIHLHQDYY--C-FDLKGSAFLWHQVRCMVAILFTIGQSLESPSIITDLMDT 358
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHY--DEIEVSHVLRDLHEDWSLLSIKATMLG 290
K+P KP Y M PL LY EF ++ W DE + V++ L +K T +
Sbjct: 359 NKFPTKPQYEMAHDIPLVLYDCEFPSMEWKSTDDEYRLHRVIQGFTRMQYDLQLK-TQMS 417
Query: 291 EMIKDTV 297
++++DT+
Sbjct: 418 QIMEDTL 424
>WB|WBGene00006473 [details] [associations]
symbol:tag-124 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:Z47075 RefSeq:NP_496062.3
GeneID:174509 KEGG:cel:CELE_E02H1.3 CTD:174509 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
OMA:NHAVKTH GeneTree:ENSGT00510000047444 PIR:T20413
ProteinModelPortal:Q09524 SMR:Q09524 STRING:Q09524
EnsemblMetazoa:E02H1.3 UCSC:E02H1.3.1 WormBase:E02H1.3
InParanoid:Q09524 NextBio:884332 Uniprot:Q09524
Length = 402
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 113/324 (34%), Positives = 181/324 (55%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R IA++ Y G+ + G Q + NT+ +H+++AL KT LIED K F+ CGRTD GVS
Sbjct: 30 RKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHLIEDWTKCDFSRCGRTDKGVS 89
Query: 62 AFCQVVTLKIRSKL-----------TSPGEESD----DNELPYLKMLNNNLPRDIKVVAW 106
AF Q + +RS T ++ D ELPY+KMLN LP+ I+V AW
Sbjct: 90 AFKQTAAMVVRSLCPGDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVLPKTIRVFAW 149
Query: 107 SPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK--MNVGNGVV 164
+PV + ++ARFDC R YKY F +A L+++ M + A+ LVG HDF N C+ MN +
Sbjct: 150 APVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQGAELLVGEHDFSNFCQIDMNEKRLLQ 209
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
++ R V V + + ND + ++ E + GFLWH IR I+++L +G+ NE+P
Sbjct: 210 SYVRKVYEVKVEQVSTHPE-NDMY-SMVELTVSGSGFLWHMIRYIVTILQEIGRENEQPS 267
Query: 225 IIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEF--DNLTWHYDEIEVSHVLRDLHEDWSLL 282
+I QL+D++KYP +P Y + PL L+ + +++ W + + + L + W+
Sbjct: 268 LISQLLDLKKYPSRPQYTLASDTPLCLFDCGYKSEDVEWKVHDYTLKSTVTGLQKTWATY 327
Query: 283 SIKATMLGEMIKDTVRESKCTMGD 306
++ M+ M+ + ++ + GD
Sbjct: 328 QARSRMMENMLGELTGMAEFSSGD 351
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 108/275 (39%), Positives = 161/275 (58%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN--TIAHHLLKALQKTCLIEDK--EKSSFACCGRTD 57
R IAL+ Y G+NY+G +Q T+ +L+A+ K L+ + F+ CGRTD
Sbjct: 92 RFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTD 151
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEE---SDDNELPYLKMLNNNLPRDIKV--VAWSPVPEK 112
GVSA QV++L++RS LT + +D E+PY+ +LN LP DI++ V P P
Sbjct: 152 KGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRP-PPN 210
Query: 113 YSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTH 172
+ ARF C+ R+YKY F L+I+ M KAA Y VG DFRN CK++ + NF+R +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIIS 270
Query: 173 AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
+ + + +++ + C F++ FLWHQ+RC+M++LFLVGQ E PEI+ +L DI
Sbjct: 271 SKI------LPLSETFY--C-FDLVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDI 321
Query: 233 EKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIE 267
EK P++PVY M PL LY +F + W ++
Sbjct: 322 EKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVD 356
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 107/303 (35%), Positives = 161/303 (53%)
Query: 4 IALKILYQGFNYHG--FQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
+A K Y G+NY+G +Q++ + T+ + +AL + LI D SF+ CGRTD GVS
Sbjct: 94 VAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFSRCGRTDKGVS 153
Query: 62 AFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLF 121
A QV++L +R S+ + Y +LN LP DI++ ++ PE + ARF C
Sbjct: 154 AMGQVISLNVR--------HSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQ 205
Query: 122 RNYKYWF----PQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
R+YKY F P LDID M++AA +G HDFRN CK++ + N+ R + + V
Sbjct: 206 RHYKYLFTKDYPGGSLDIDRMNEAAALYLGEHDFRNFCKIDASKQITNYHRRILSSKVIC 265
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
D + F+++ FLWHQ+RC+M++LFL+GQ E +I L+DI+K P
Sbjct: 266 I-------DPSTGLYAFDLQGTAFLWHQVRCMMAILFLIGQKLEPASLINDLLDIKKVPT 318
Query: 238 KPVYPMVRGEPLNLYHTEFDNLTWHY--DEIEVS-----HVLRDLHEDWSLLSIKATMLG 290
KP+Y M PL LY +FDN+ W D + H ++ W L I+ +
Sbjct: 319 KPIYDMASEYPLILYDCDFDNIEWTLPTDSPTTAPRIAKHTYETIYHQWHSLRIREQIAS 378
Query: 291 EMI 293
M+
Sbjct: 379 FML 381
>UNIPROTKB|G4MKS9 [details] [associations]
symbol:MGG_16154 "tRNA-pseudouridine synthase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
EMBL:CM001231 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003709381.1 ProteinModelPortal:G4MKS9
EnsemblFungi:MGG_16154T0 GeneID:12984466 KEGG:mgr:MGG_16154
Uniprot:G4MKS9
Length = 694
Score = 267 (99.0 bits), Expect = 9.9e-35, Sum P(2) = 9.9e-35
Identities = 57/135 (42%), Positives = 80/135 (59%)
Query: 133 LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS---AWQNVQFNDS-- 187
LD+DAM +AA+ G HDFRN CK++ + NF+RL+ A + A ++ + D+
Sbjct: 385 LDLDAMREAARLFEGEHDFRNFCKIDASKQISNFKRLIREASIVEVPEAASSLPYLDTPD 444
Query: 188 ----------HHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPR 237
+ F++R FLWHQIR +++VLFLVGQ EKP I+ +L+DIEKYP
Sbjct: 445 FRPSGEDSQARPKVYYFHVRGSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPG 504
Query: 238 KPVYPMVRGEPLNLY 252
KP YPM PL L+
Sbjct: 505 KPNYPMASDAPLVLW 519
Score = 144 (55.7 bits), Expect = 9.9e-35, Sum P(2) = 9.9e-35
Identities = 40/83 (48%), Positives = 47/83 (56%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSD-NTIAHHLLKALQKTCLI-----EDKEKSSF-AC-- 52
R IALK+ Y G NY+G + Q S I L KAL KTCLI D + F C
Sbjct: 166 RYIALKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCDY 225
Query: 53 --CGRTDSGVSAFCQVVTLKIRS 73
CGRTD GVSAF QVV L+++S
Sbjct: 226 SKCGRTDRGVSAFGQVVALRVKS 248
Score = 130 (50.8 bits), Expect = 2.9e-33, Sum P(2) = 2.9e-33
Identities = 38/106 (35%), Positives = 55/106 (51%)
Query: 33 LKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVVTLKIR--SKLTSPGEESD-----DN 85
L+ +++ + D++ S A T + +A QVV + + GEE D D
Sbjct: 252 LRKKKQSAVQLDQDGSGEAASASTGAVDAAGAQVVPEDSQPGQEDEQEGEEDDAPYPADK 311
Query: 86 ELPYLKMLNNNLPRDIKVVAWSPVPEK-YSARFDCLFRNYKYWFPQ 130
E+ Y KMLN LP DI+V+AW P P +SAR C R Y+Y+F Q
Sbjct: 312 EIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQ 357
>DICTYBASE|DDB_G0288909 [details] [associations]
symbol:pus3 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004730 "pseudouridylate
synthase activity" evidence=ISS] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0288909 GO:GO:0005634 GO:GO:0005737
EMBL:AAFI02000126 GenomeReviews:CM000154_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008033 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
RefSeq:XP_636482.1 ProteinModelPortal:Q54I97 STRING:Q54I97
EnsemblProtists:DDB0231223 GeneID:8626865 KEGG:ddi:DDB_G0288909
InParanoid:Q54I97 OMA:PPYEMAS Uniprot:Q54I97
Length = 491
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 86/265 (32%), Positives = 145/265 (54%)
Query: 41 LIEDKEKSSFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEES--DDNELPYLKMLNNNLP 98
+I K++S RT S + ++ K ++S DD ELPY+KMLN LP
Sbjct: 164 IIPPKDQSGGPISNRTKSNKT---ELTKNNDNEKARKGNKKSIEDDEELPYIKMLNGVLP 220
Query: 99 RDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN 158
+I+++AW+PVP ++ARF L R YKY+F GLD++ M +A++ +G H++ N CK++
Sbjct: 221 PEIRILAWAPVPFHFNARFSTLSRTYKYFFNPNGLDLNLMKEASKLYLGEHNYINFCKID 280
Query: 159 VGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
V V +F R++ + + V+ ++ + I+ FLWHQIRC+M+VLFL+GQ
Sbjct: 281 VN--VKSFMRVILQFDI----EKVENSELY----VATIKGFAFLWHQIRCMMAVLFLIGQ 330
Query: 219 GNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHED 278
+I QL+D K KP Y M PL L+ +D++ + Y+ + +
Sbjct: 331 KKANISLITQLLDTNKTITKPPYEMASEVPLVLFDCGYDDIDFIYESSVQEKTVESMFGV 390
Query: 279 WSLLSIKATMLGEMIKDTVRESKCT 303
++ IK T + +I+ T++ ++ T
Sbjct: 391 YNDYLIK-TEVNRLIRSTLKNTEPT 414
Score = 160 (61.4 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +A K+ Y G+ + GF Q S+ TI ++L+KA KT LI D + +++ GRTD GVS
Sbjct: 85 RHVAFKLSYVGWPFFGFAAQDCSEETIENYLIKAFLKTSLIPDIKTANYFKSGRTDKGVS 144
Query: 62 AFCQVVTLKIRSKLTSPGE 80
A+ QV++L +RS L GE
Sbjct: 145 AYGQVISLYVRSNLKE-GE 162
>ASPGD|ASPL0000040109 [details] [associations]
symbol:AN3170 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:BN001306
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000199032
EnsemblFungi:CADANIAT00009900 OMA:LWDCIFP Uniprot:C8VIE4
Length = 664
Score = 179 (68.1 bits), Expect = 9.0e-33, Sum P(4) = 9.0e-33
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 194 FNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYH 253
FN++ FLWHQ+R ++ +LFLVGQG E P ++++L+D+ K PRKP+Y M PL L++
Sbjct: 460 FNLQGSAFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWN 519
Query: 254 TEF 256
F
Sbjct: 520 CVF 522
Score = 146 (56.5 bits), Expect = 9.0e-33, Sum P(4) = 9.0e-33
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 76 TSPGEESDD--NELPYLKMLNNNLPRDIKVVAWSP-VPEKYSARFDCLFRNYKYWFPQ 130
T E+ DD +ELPY+ +LN LP DI+V+AW P PE + AR+ C R+YKY+F Q
Sbjct: 287 TVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQ 344
Score = 123 (48.4 bits), Expect = 9.0e-33, Sum P(4) = 9.0e-33
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 128 FPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV 175
+ + LDIDAM +AA+Y G HDFRN CK++ + NF R++ A +
Sbjct: 367 YREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENFERIIYRADI 414
Score = 78 (32.5 bits), Expect = 8.3e-26, Sum P(4) = 8.3e-26
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 46 EKSSFACCGRTDSGVSAFCQVVTLKIRS-----KLTSPGEESDD 84
E ++ GRTD GVSAF QV+ LK+RS K P + S+D
Sbjct: 236 EGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSND 279
Score = 57 (25.1 bits), Expect = 9.0e-33, Sum P(4) = 9.0e-33
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDN---TIAHHLLKALQKTCLI 42
R IALK Y G Y G + ++ TI + KAL +T LI
Sbjct: 165 RFIALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLI 208
>UNIPROTKB|E1BUI0 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:AADN02040857 EMBL:AADN02040858
IPI:IPI00574950 RefSeq:XP_417580.2 UniGene:Gga.10892
Ensembl:ENSGALT00000002630 GeneID:419419 KEGG:gga:419419
NextBio:20822478 Uniprot:E1BUI0
Length = 291
Score = 158 (60.7 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 38/134 (28%), Positives = 66/134 (49%)
Query: 127 WFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGV--TSAWQNVQ 183
W P G L++ AM AAQ+L+GTHDF C +N + + + A + +S + +
Sbjct: 147 WAPPGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETPFRSPVKTILQADIQPSSGFLSHH 206
Query: 184 FNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPM 243
+ E +S+ FL+ Q+R ++ L VGQG P I++L++++ P + M
Sbjct: 207 YEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKLAPHHIKELLEMKDARAFPAFAM 266
Query: 244 VRGEPLNLYHTEFD 257
L L E++
Sbjct: 267 APSSGLFLKSVEYN 280
Score = 109 (43.4 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 37/121 (30%), Positives = 59/121 (48%)
Query: 10 YQGFNYHGFQIQTSSDNT---IAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQV 66
Y G Y G +QTS++ + + ++L KA Q ++ F RTDSGV A C
Sbjct: 14 YWGTKYSGV-MQTSAEQSGIGVQNYLEKAAQN---LKPVVPIKFHISSRTDSGVHALCNS 69
Query: 67 VTLKIRSKLTSPGEESDDNELPYLKMLNNNL-PRDIKVVAWSPVPEKYSARFDCLFRNYK 125
L I+ +PG+ + + + LN++L P I++++ V + ARF L R Y
Sbjct: 70 AHLDIQR---APGKPAFQERV-LIGCLNHHLKPEPIRILSAYRVTNNFHARFSALSRTYI 125
Query: 126 Y 126
Y
Sbjct: 126 Y 126
>UNIPROTKB|Q9KTA4 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 209 (78.6 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 80/249 (32%), Positives = 116/249 (46%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 1 MR-IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGV 54
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWS-PVPEKYSARFDC 119
QVV T+ ++ + + N NLP+DI V W+ VP+++ ARF
Sbjct: 55 HGTGQVVHFD-----TT----AERQMVAWTMGANANLPKDI-AVRWAMAVPDEFHARFSA 104
Query: 120 LFRNYKY------WFP---QAG-------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
R Y+Y + P +G LD++ M +A QYL+G +DF
Sbjct: 105 TARRYRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------ 152
Query: 164 VNFRRLVTHAGVTSAWQNVQ-FNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+FR + H S W+NV N + H +I++ F+ H +R I L VG+G +
Sbjct: 153 TSFRAV--HCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQ 210
Query: 222 KPEIIQQLV 230
KPE IQ L+
Sbjct: 211 KPEWIQWLL 219
>TIGR_CMR|VC_0999 [details] [associations]
symbol:VC_0999 "tRNA pseudouridine synthase A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 209 (78.6 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 80/249 (32%), Positives = 116/249 (46%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR IAL I Y G +Y+G+Q Q ++ L KAL K C GRTD+GV
Sbjct: 1 MR-IALGIEYDGTHYYGWQRQREV-KSVQEALEKALSKIA----NHPVEVQCAGRTDAGV 54
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWS-PVPEKYSARFDC 119
QVV T+ ++ + + N NLP+DI V W+ VP+++ ARF
Sbjct: 55 HGTGQVVHFD-----TT----AERQMVAWTMGANANLPKDI-AVRWAMAVPDEFHARFSA 104
Query: 120 LFRNYKY------WFP---QAG-------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGV 163
R Y+Y + P +G LD++ M +A QYL+G +DF
Sbjct: 105 TARRYRYVIYNHVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDF------------ 152
Query: 164 VNFRRLVTHAGVTSAWQNVQ-FNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+FR + H S W+NV N + H +I++ F+ H +R I L VG+G +
Sbjct: 153 TSFRAV--HCQSRSPWRNVMHLNVTRHGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQ 210
Query: 222 KPEIIQQLV 230
KPE IQ L+
Sbjct: 211 KPEWIQWLL 219
>UNIPROTKB|E9PRI9 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
EMBL:AP000842 GO:GO:0031119 Gene3D:3.30.70.580 PANTHER:PTHR11142
HGNC:HGNC:25461 IPI:IPI00978468 ProteinModelPortal:E9PRI9
SMR:E9PRI9 Ensembl:ENST00000534158 ArrayExpress:E9PRI9 Bgee:E9PRI9
Uniprot:E9PRI9
Length = 169
Score = 195 (73.7 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVS 61
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E ++ S++ CGRTD GVS
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVS 122
Query: 62 AFCQVVTLKIRSKLTSPGEESDD 84
AF QV++L +RS+ G +S+D
Sbjct: 123 AFGQVISLDLRSQFPR-GRDSED 144
>UNIPROTKB|F1NZ90 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
EMBL:AADN02034827 IPI:IPI00587879 Ensembl:ENSGALT00000003714
Uniprot:F1NZ90
Length = 405
Score = 201 (75.8 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 97/360 (26%), Positives = 149/360 (41%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKT-CLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL ++ C+ E D +K SF C
Sbjct: 60 RKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRCA 119
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA Q+V+LK+R DD L+ +NN+LP I+++ V ++
Sbjct: 120 RTDKGVSAAGQIVSLKVRL--------IDD----ILEKINNHLPSHIRILGLKRVTGGFN 167
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKA---------------AQYLVGTHDFRNLCK 156
++ C R Y Y P A D D +A A+Y GTH+F N
Sbjct: 168 SKNKCDARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLARYK-GTHNFHNFTS 226
Query: 157 MNVGNGVVNFRRLVT--HAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLF 214
G + RR + + G + ++F ++ Q F+ HQIR ++ ++
Sbjct: 227 QK-GPKDPSARRYIMEMYCGEPFVREGIEF-------AVIKVKGQSFMMHQIRKMIGLVI 278
Query: 215 LVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRD 274
+ +G II++ EK P G L L F+ + + L
Sbjct: 279 AIVKGYAPESIIERSWGEEKVD----VPKAPGLGLVLERVHFEKYNRRFGNDGLHEPLEW 334
Query: 275 LHEDWSLLSIKATMLGEMIKDTVRESKCTMGDLDINHLIEGEFSRPGRILSETGEVRSRN 334
E+ + K + I +T RE K M L N L +F+ S T E+ + N
Sbjct: 335 KEEEEKIAVFKEQYIYPTIINTEREEKSMMSWL--NTLSIHDFN------SSTAEMEANN 386
>TIGR_CMR|CBU_0892 [details] [associations]
symbol:CBU_0892 "tRNA pseudouridine synthase A"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248672 ProtClustDB:PRK00021 OMA:TPFRNVH
RefSeq:YP_338281.1 ProteinModelPortal:Q4AAX9 SMR:Q4AAX9
GeneID:1208785 KEGG:cbu:CBU_0892 PATRIC:17930485
BioCyc:CBUR227377:GJ7S-885-MONOMER Uniprot:Q4AAX9
Length = 261
Score = 168 (64.2 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 70/246 (28%), Positives = 102/246 (41%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
M IAL I Y G YHG+Q+Q + T+ + KAL C GRTD+GV
Sbjct: 1 MARIALGIRYDGSAYHGWQVQEAL-KTVQGEVEKALSAVA----NHPVFVTCAGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV + + SD ++ N+NLP DI ++ V E + AR+ +
Sbjct: 56 HASAQV------AHFDTTAYRSDH---AWVFGANSNLPHDISILWAKAVEEDFHARYSAM 106
Query: 121 FRNYKYWF------PQA-----G-----LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
R Y+Y P G LD M AQYL+G HDF + G G
Sbjct: 107 ARRYRYIVYNHEIRPAILRKAIGWHYRPLDEKRMQAGAQYLIGEHDFSSF----QGAGCQ 162
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ V +Q + + E +++ FL H +R I VL +G G + P+
Sbjct: 163 S------RTPVRKIFQIEIYRIRRMVVIE--VQANAFLLHMVRNIAGVLIAIGSGEKHPD 214
Query: 225 IIQQLV 230
Q ++
Sbjct: 215 WAQTVL 220
>TIGR_CMR|CHY_2276 [details] [associations]
symbol:CHY_2276 "tRNA pseudouridine synthase A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:YP_361085.1 STRING:Q3A9U9 GeneID:3728226
KEGG:chy:CHY_2276 PATRIC:21277623
BioCyc:CHYD246194:GJCN-2275-MONOMER Uniprot:Q3A9U9
Length = 246
Score = 165 (63.1 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 56/162 (34%), Positives = 79/162 (48%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I Y G N+ GFQ Q ++ TI L + L K KE GRTD+GV A Q
Sbjct: 9 LTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKIL----KEPVKVIGAGRTDAGVHALGQ 64
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
VV ++P + D ++P ++LNN LP I+V+ VP+ + AR+ + Y+
Sbjct: 65 VVNF------SAPWKAPVD-KIP--EILNNTLPTAIRVLEAEIVPDDFHARYSARKKEYR 115
Query: 126 Y---------------W-FPQAGLDIDAMHKAAQYLVGTHDF 151
Y W PQ LD + + KA +YL+GTHDF
Sbjct: 116 YYLYYGPPSPFYERYAWALPQK-LDREKVAKALEYLIGTHDF 156
>UNIPROTKB|P07649 [details] [associations]
symbol:truA "tRNA pseudouridine synthase I" species:83333
"Escherichia coli K-12" [GO:0000049 "tRNA binding" evidence=IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:M68934
GO:GO:0000049 GO:GO:0009982 SUPFAM:SSF55120 EMBL:M15543 EMBL:X02743
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
EMBL:M15542 PIR:B23792 RefSeq:NP_416821.1 RefSeq:YP_490560.1
PDB:1DJ0 PDB:2NQP PDB:2NR0 PDB:2NRE PDBsum:1DJ0 PDBsum:2NQP
PDBsum:2NR0 PDBsum:2NRE ProteinModelPortal:P07649 SMR:P07649
DIP:DIP-11043N IntAct:P07649 MINT:MINT-1310146 PRIDE:P07649
EnsemblBacteria:EBESCT00000002191 EnsemblBacteria:EBESCT00000002192
EnsemblBacteria:EBESCT00000017099 GeneID:12932365 GeneID:946793
KEGG:ecj:Y75_p2284 KEGG:eco:b2318 PATRIC:32120007 EchoBASE:EB0449
EcoGene:EG10454 OMA:TPFRNVH BioCyc:EcoCyc:EG10454-MONOMER
BioCyc:ECOL316407:JW2315-MONOMER BioCyc:MetaCyc:EG10454-MONOMER
EvolutionaryTrace:P07649 Genevestigator:P07649 Uniprot:P07649
Length = 270
Score = 166 (63.5 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 73/246 (29%), Positives = 109/246 (44%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
IAL I Y G Y+G+Q Q ++ L KAL + E + C GRTD+GV
Sbjct: 12 IALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVA----NEPITVFCAGRTDAGVHGT 66
Query: 64 CQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAW-SPVPEKYSARFDCLFR 122
QVV + T+ +++ + +N NLP DI V W VP+ + ARF R
Sbjct: 67 GQVVHFET----TALRKDA-----AWTLGVNANLPGDI-AVRWVKTVPDDFHARFSATAR 116
Query: 123 NYKYWF------PQA---G-------LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNF 166
Y+Y P G LD + MH+AAQ L+G +DF +F
Sbjct: 117 RYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDF------------TSF 164
Query: 167 RRLVTHAGVTSAWQNVQ-FNDSHHN-ICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
R + + + W+NV N + H +I++ F+ H +R I+ L VG N+
Sbjct: 165 RAVQCQS--RTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPES 222
Query: 225 IIQQLV 230
I +L+
Sbjct: 223 WIAELL 228
>RGD|1311871 [details] [associations]
symbol:Pus1 "pseudouridylate synthase 1" species:10116 "Rattus
norvegicus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA;ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 169 (64.5 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 85/348 (24%), Positives = 138/348 (39%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKAL-QKTCLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL Q C+ E D K SF C
Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L +N++LP I+++ V ++
Sbjct: 140 RTDKGVSAAGQVVSLKVWL--------IDD----ILDKINSHLPSHIRILGLKRVTGGFN 187
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCKMNVG--NGVVNFRRL 169
++ C R Y Y P A D D ++ Y + + + ++ +G G NF
Sbjct: 188 SKNKCDARTYCYMLPTFAFAHKDRDVQDES--YRLSAETLQQVNRL-LGCYKGTHNFHNF 244
Query: 170 VTHAG---------VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ G + + F ++ Q F+ HQIR ++ ++ + +G
Sbjct: 245 TSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGY 304
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWS 280
++++ EK P G L L F+ + + L E+
Sbjct: 305 APESVLERSWGEEKVD----VPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGK 360
Query: 281 LLSIKATMLGEMIKDTVRESKCTMGDLDINHLIEGEFSRPGRILSETG 328
+ + K + I T R+ + +M +N L FS +TG
Sbjct: 361 VTAFKEQYIYPTIVSTERDER-SMAQW-LNTLPIHNFSGTALGADDTG 406
>UNIPROTKB|Q4KM92 [details] [associations]
symbol:Pus1 "tRNA pseudouridine synthase A, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 169 (64.5 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 85/348 (24%), Positives = 138/348 (39%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKAL-QKTCLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL Q C+ E D K SF C
Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L +N++LP I+++ V ++
Sbjct: 140 RTDKGVSAAGQVVSLKVWL--------IDD----ILDKINSHLPSHIRILGLKRVTGGFN 187
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCKMNVG--NGVVNFRRL 169
++ C R Y Y P A D D ++ Y + + + ++ +G G NF
Sbjct: 188 SKNKCDARTYCYMLPTFAFAHKDRDVQDES--YRLSAETLQQVNRL-LGCYKGTHNFHNF 244
Query: 170 VTHAG---------VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGN 220
+ G + + F ++ Q F+ HQIR ++ ++ + +G
Sbjct: 245 TSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGY 304
Query: 221 EKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWS 280
++++ EK P G L L F+ + + L E+
Sbjct: 305 APESVLERSWGEEKVD----VPKAPGLGLVLERVHFEKYNQRFGSDGLHEPLDWAQEEGK 360
Query: 281 LLSIKATMLGEMIKDTVRESKCTMGDLDINHLIEGEFSRPGRILSETG 328
+ + K + I T R+ + +M +N L FS +TG
Sbjct: 361 VTAFKEQYIYPTIVSTERDER-SMAQW-LNTLPIHNFSGTALGADDTG 406
>UNIPROTKB|F1RFR2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
OMA:CDARTYF EMBL:CU469318 Ensembl:ENSSSCT00000010680 Uniprot:F1RFR2
Length = 433
Score = 169 (64.5 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 81/296 (27%), Positives = 128/296 (43%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKT-CLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL ++ C+ E D K SF C
Sbjct: 90 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 149
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L+ +N++LP I+++ V ++
Sbjct: 150 RTDKGVSAAGQVVSLKVWL--------IDD----ILEKINSHLPSHIRILGLKRVTGGFN 197
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCKMNVG-NGVVNFRRLV 170
++ C R Y Y P A D D + Y + T + + ++ G NF
Sbjct: 198 SKNKCDARTYFYMLPTFAFAHKDHDVQDET--YRLSTETLQRVNRLLACYKGTHNFHNFT 255
Query: 171 THAGVT--SAWQNV--QFNDSH--HNICEF---NIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ G SA + + F + EF ++ Q F+ HQIR ++ ++ + +G
Sbjct: 256 SQKGPREPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYA 315
Query: 222 KPEIIQQL-----VDIEKYPRKP-VYPMVRGEPLNL---YHTEFDNLTWHYDEIEV 268
++++ VD+ K P V V E N + + L W +E EV
Sbjct: 316 PESVLERSWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGVHEPLDWAREEAEV 371
>UNIPROTKB|E1BDL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 CTD:80324 OMA:CDARTYF
EMBL:DAAA02044957 IPI:IPI00698653 RefSeq:XP_002694500.1
RefSeq:XP_593895.2 UniGene:Bt.7818 Ensembl:ENSBTAT00000017270
GeneID:515808 KEGG:bta:515808 NextBio:20872010 Uniprot:E1BDL3
Length = 433
Score = 168 (64.2 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 83/303 (27%), Positives = 130/303 (42%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKT-CLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL ++ C+ E D K SF C
Sbjct: 90 RKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 149
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L+ +N++LP I+++ V ++
Sbjct: 150 RTDKGVSAAGQVVSLKVWL--------IDD----ILEKINSHLPSHIRILGLKRVTGGFN 197
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVT 171
++ C R Y Y P A D D+ + + T N + G NF +
Sbjct: 198 SKNKCDARTYVYMLPTFAFAHKDHDSQDETYRLSAETLGRVNRL-LACYKGTHNFHNFTS 256
Query: 172 HAGV--TSAWQNV--QFNDSH--HNICEF---NIRSQGFLWHQIRCIMSVLFLVGQGNEK 222
G SA + + F + EF ++ Q F+ HQIR ++ ++ + +G
Sbjct: 257 QKGPHEPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAP 316
Query: 223 PEIIQQL-----VDIEKYPRKP-VYPMVRGEPLN--LYHTEF-DNLTWHYDEIEVSHVLR 273
++++ VD+ K P V V E N H + L W +E EV+ +
Sbjct: 317 ESVLERCWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGLHEPLDWAREEAEVT-AFK 375
Query: 274 DLH 276
+ H
Sbjct: 376 EQH 378
>UNIPROTKB|G8JLB3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
EMBL:AC131009 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HGNC:HGNC:15508 ChiTaRS:PUS1
ProteinModelPortal:G8JLB3 SMR:G8JLB3 PRIDE:G8JLB3
Ensembl:ENST00000322060 Bgee:G8JLB3 Uniprot:G8JLB3
Length = 384
Score = 166 (63.5 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 77/297 (25%), Positives = 125/297 (42%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKT-CLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL ++ C+ E D K SF C
Sbjct: 56 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 115
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L+ +N++LP I+++ V ++
Sbjct: 116 RTDKGVSAAGQVVSLKVWL--------IDD----ILEKINSHLPSHIRILGLKRVTGGFN 163
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCKMNVG-NGVVNFRRLV 170
++ C R Y Y P A D D + Y + + + ++ G NF
Sbjct: 164 SKNRCDARTYCYLLPTFAFAHKDRDVQDET--YRLSAETLQQVNRLLACYKGTHNFHNFT 221
Query: 171 THAGVT--SAWQNV-------QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ G SA + + F ++ Q F+ HQIR ++ ++ + +G
Sbjct: 222 SQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYA 281
Query: 222 KPEIIQQLVDIEKY--PRKPVYPMVRGEP-LNLYHTEFDN------LTWHYDEIEVS 269
++++ EK P+ P +V Y+ F N L W +E +V+
Sbjct: 282 PESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVA 338
>UNIPROTKB|J9NVH5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:AAEX03014587
Ensembl:ENSCAFT00000047970 Uniprot:J9NVH5
Length = 398
Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 74/264 (28%), Positives = 112/264 (42%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKAL-QKTCLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL Q C+ E D K SF C
Sbjct: 61 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRCA 120
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L+ +N++LP I+++ V ++
Sbjct: 121 RTDKGVSAAGQVVSLKVWL--------IDD----ILEKINSHLPPHIRILGLKRVTGGFN 168
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKA----AQYLV----------GTHDFRNLCKM 157
++ C R Y Y P A D D ++ A+ L GTH+F N
Sbjct: 169 SKNKCDARTYFYMLPTFAFAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQ 228
Query: 158 NVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
G + RR + + F ++ Q F+ HQIR ++ +L +
Sbjct: 229 K-GPQEASARRYIL-----DMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIV 282
Query: 218 QGNEKPEIIQQL-----VDIEKYP 236
+G ++++ VD+ K P
Sbjct: 283 KGYAPESVLERSWGDAKVDVPKAP 306
>MGI|MGI:1929237 [details] [associations]
symbol:Pus1 "pseudouridine synthase 1" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IMP] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IDA;IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IDA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 MGI:MGI:1929237 GO:GO:0005739
GO:GO:0005730 GO:GO:0003677 GO:GO:0045944 GO:GO:0003723
GO:GO:0005667 GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 CTD:80324
HOVERGEN:HBG000489 OrthoDB:EOG4QRH44 EMBL:AF116237 EMBL:AF269250
EMBL:AB041563 EMBL:AK089258 EMBL:AK138570 EMBL:BC021446
EMBL:BC034359 IPI:IPI00123912 IPI:IPI00621502 IPI:IPI00623093
IPI:IPI00653171 RefSeq:NP_001020733.1 RefSeq:NP_062674.2
UniGene:Mm.23528 ProteinModelPortal:Q9WU56 SMR:Q9WU56 STRING:Q9WU56
PhosphoSite:Q9WU56 PRIDE:Q9WU56 DNASU:56361
Ensembl:ENSMUST00000031481 Ensembl:ENSMUST00000031483
Ensembl:ENSMUST00000112426 Ensembl:ENSMUST00000170468 GeneID:56361
KEGG:mmu:56361 UCSC:uc008yrm.1 UCSC:uc008yrn.1 UCSC:uc008yro.1
UCSC:uc008yrp.1 NextBio:312382 Bgee:Q9WU56 CleanEx:MM_PUS1
Genevestigator:Q9WU56 GermOnline:ENSMUSG00000029507 Uniprot:Q9WU56
Length = 423
Score = 166 (63.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 84/347 (24%), Positives = 137/347 (39%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKAL-QKTCLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL Q C+ E D K SF C
Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L +N++LP I+++ V ++
Sbjct: 140 RTDKGVSAAGQVVSLKVWL--------IDD----ILDKINSHLPSHIRILGLKRVTGGFN 187
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCKMNVG-NGVVNFRRLV 170
++ C R Y Y P A D D ++ Y + + + ++ G NF
Sbjct: 188 SKNKCDARTYCYMLPTFAFAHKDRDVQDES--YRLSAETLQQVNRLLACYKGTHNFHNFT 245
Query: 171 THAG---------VTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ G + + F ++ Q F+ HQIR ++ ++ + +G
Sbjct: 246 SQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYA 305
Query: 222 KPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSL 281
++++ EK P G L L F+ + + L E+ +
Sbjct: 306 PESVLERSWGEEKVD----VPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGKV 361
Query: 282 LSIKATMLGEMIKDTVRESKCTMGDLDINHLIEGEFSRPGRILSETG 328
+ K + I T R+ + +M +N L FS ++TG
Sbjct: 362 TAFKEQYIYPTIVSTERDER-SMAQW-LNTLPIHNFSGTALGAADTG 406
>UNIPROTKB|Q9Y606 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0004730
"pseudouridylate synthase activity" evidence=NAS] [GO:0008033 "tRNA
processing" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005739
GO:GO:0005634 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0008033 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 GO:GO:0031119
BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Orphanet:2598 EMBL:AF318369 EMBL:AK074659 EMBL:AK292242
EMBL:BC002901 EMBL:BC009505 EMBL:BC019320 EMBL:AF116238
IPI:IPI00001716 IPI:IPI00619930 RefSeq:NP_001002019.1
RefSeq:NP_001002020.1 RefSeq:NP_079491.2 UniGene:Hs.592004
ProteinModelPortal:Q9Y606 SMR:Q9Y606 STRING:Q9Y606
PhosphoSite:Q9Y606 DMDM:114152895 PaxDb:Q9Y606 PRIDE:Q9Y606
DNASU:80324 Ensembl:ENST00000376649 Ensembl:ENST00000440818
Ensembl:ENST00000443358 GeneID:80324 KEGG:hsa:80324 UCSC:uc001ujf.3
CTD:80324 GeneCards:GC12P132413 HGNC:HGNC:15508 HPA:HPA051636
MIM:600462 MIM:608109 neXtProt:NX_Q9Y606 PharmGKB:PA34047
HOGENOM:HOG000031229 HOVERGEN:HBG000489 InParanoid:Q9Y606
OMA:CDARTYF OrthoDB:EOG4QRH44 ChiTaRS:PUS1 GenomeRNAi:80324
NextBio:70847 ArrayExpress:Q9Y606 Bgee:Q9Y606 CleanEx:HS_PUS1
Genevestigator:Q9Y606 GermOnline:ENSG00000177192 Uniprot:Q9Y606
Length = 427
Score = 166 (63.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 77/297 (25%), Positives = 125/297 (42%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKT-CLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL ++ C+ E D K SF C
Sbjct: 84 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 143
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L+ +N++LP I+++ V ++
Sbjct: 144 RTDKGVSAAGQVVSLKVWL--------IDD----ILEKINSHLPSHIRILGLKRVTGGFN 191
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKAAQYLVGTHDFRNLCKMNVG-NGVVNFRRLV 170
++ C R Y Y P A D D + Y + + + ++ G NF
Sbjct: 192 SKNRCDARTYCYLLPTFAFAHKDRDVQDET--YRLSAETLQQVNRLLACYKGTHNFHNFT 249
Query: 171 THAGVT--SAWQNV-------QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNE 221
+ G SA + + F ++ Q F+ HQIR ++ ++ + +G
Sbjct: 250 SQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYA 309
Query: 222 KPEIIQQLVDIEKY--PRKPVYPMVRGEP-LNLYHTEFDN------LTWHYDEIEVS 269
++++ EK P+ P +V Y+ F N L W +E +V+
Sbjct: 310 PESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVA 366
>UNIPROTKB|E2QW32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 OMA:CDARTYF EMBL:AAEX03014587
Ensembl:ENSCAFT00000010378 Uniprot:E2QW32
Length = 438
Score = 166 (63.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 74/264 (28%), Positives = 112/264 (42%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKAL-QKTCLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL Q C+ E D K SF C
Sbjct: 94 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRCA 153
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ DD L+ +N++LP I+++ V ++
Sbjct: 154 RTDKGVSAAGQVVSLKVWL--------IDD----ILEKINSHLPPHIRILGLKRVTGGFN 201
Query: 115 ARFDCLFRNYKYWFPQ---AGLDIDAMHKA----AQYLV----------GTHDFRNLCKM 157
++ C R Y Y P A D D ++ A+ L GTH+F N
Sbjct: 202 SKNKCDARTYFYMLPTFAFAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQ 261
Query: 158 NVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVG 217
G + RR + + F ++ Q F+ HQIR ++ +L +
Sbjct: 262 K-GPQEASARRYIL-----DMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIV 315
Query: 218 QGNEKPEIIQQL-----VDIEKYP 236
+G ++++ VD+ K P
Sbjct: 316 KGYAPESVLERSWGDAKVDVPKAP 339
>SGD|S000003031 [details] [associations]
symbol:PUS2 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IGI;IMP]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IGI;IMP] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000003031 GO:GO:0005739 EMBL:BK006941
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
RefSeq:NP_011452.4 GeneID:852817 KEGG:sce:YGL063W KO:K15452
RefSeq:NP_011456.5 GeneID:852821 KEGG:sce:YGL059W eggNOG:COG0101
HOGENOM:HOG000213984 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:X80674 EMBL:Z72585 PIR:S64067
ProteinModelPortal:P53167 SMR:P53167 DIP:DIP-5022N MINT:MINT-499274
STRING:P53167 EnsemblFungi:YGL063W CYGD:YGL063w OMA:CFISSES
BioCyc:MetaCyc:MONOMER-16706 NextBio:972357 Genevestigator:P53167
GermOnline:YGL063W Uniprot:P53167
Length = 370
Score = 110 (43.8 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 37/125 (29%), Positives = 56/125 (44%)
Query: 10 YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDK----EKSSFACCGRTDSGVSAFCQ 65
Y G Y+G Q L K + E+ +K+SF RTD GV A
Sbjct: 5 YCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVHAMLN 64
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
+++LKI + E++ + LN LP +I+V PV +K++AR C R Y+
Sbjct: 65 LLSLKITLR-----EDT-------VAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQ 112
Query: 126 YWFPQ 130
Y P+
Sbjct: 113 YLIPE 117
Score = 95 (38.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 40/146 (27%), Positives = 65/146 (44%)
Query: 135 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEF 194
+DA A Q VGTH+F N + G + +R + V+ A S IC
Sbjct: 200 LDAFEAAMQEYVGTHNFHNFTTGKLW-GDPSAQRHIKKVVVSQA--------SPGWIC-V 249
Query: 195 NIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI--EKY-PRKPVYPMV-RGEPLN 250
I Q F+ HQIR ++++ L + P I++ + KY PR P ++ G +
Sbjct: 250 RIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLEGPVFD 309
Query: 251 LYHTEFDNLTW---HYDEIEVSHVLR 273
Y+T+ NL + D+I + + R
Sbjct: 310 GYNTKLRNLLYCEIRPDDITLERMCR 335
>ZFIN|ZDB-GENE-041212-26 [details] [associations]
symbol:pus1 "pseudouridine synthase 1" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 ZFIN:ZDB-GENE-041212-26
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
EMBL:CR450803 IPI:IPI00502878 Ensembl:ENSDART00000144859
Bgee:F1QWW1 Uniprot:F1QWW1
Length = 412
Score = 160 (61.4 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 79/326 (24%), Positives = 129/326 (39%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKT-CL----IEDKEKSSFACCG 54
+ +AL + Y G Y+G Q + S TI L+ AL C+ E+ +K SF
Sbjct: 76 KKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRSA 135
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GVSA QVV+LK+ +N L+ +N +LP I+V+ V ++
Sbjct: 136 RTDKGVSAVGQVVSLKVWMI---------EN---ILEKINAHLPPQIRVLGCKRVTGGFN 183
Query: 115 ARFDCLFRNYKYWFPQAGLD-----------------IDAMHKAAQYLVGTHDFRNLCKM 157
++ +C R Y Y P + +++ GTH+F N
Sbjct: 184 SKNNCYARTYSYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFGLYKGTHNFHNFTSQ 243
Query: 158 NVGNGVVNFRRLVTH--AGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFL 215
G+ + R +TH G ++V+F +R Q F+ HQIR ++ ++
Sbjct: 244 K-GHRDPSAMRYITHMSCGEPFIRKDVEF-------AVITVRGQSFMMHQIRKMIGLVIA 295
Query: 216 VGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEIEVSHVLRDL 275
V +G +I++ EK P G L L FD + + L
Sbjct: 296 VVKGYVDEGVIEKSWGEEKVG----VPKAPGLGLVLERVHFDGYNKRFGGDGIHETLEWT 351
Query: 276 HEDWSLLSIKATMLGEMIKDTVRESK 301
++ ++ K + I DT K
Sbjct: 352 EQEEAIADFKEKHIYPTIVDTELNEK 377
>MGI|MGI:3047787 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10090
"Mus musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 MGI:MGI:3047787 GO:GO:0003723 GO:GO:0008033
EMBL:AL670236 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:Mm.259270 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789
HOGENOM:HOG000248674 HOVERGEN:HBG053770 OMA:WALPADC
OrthoDB:EOG4P5K9S EMBL:AK151452 EMBL:AK160236 IPI:IPI00458175
IPI:IPI00626517 IPI:IPI00875388 RefSeq:NP_001028662.1
ProteinModelPortal:A2ADA5 SMR:A2ADA5 STRING:A2ADA5
PhosphoSite:A2ADA5 PaxDb:A2ADA5 PRIDE:A2ADA5
Ensembl:ENSMUST00000097737 GeneID:433813 KEGG:mmu:433813
UCSC:uc008wfi.1 UCSC:uc012drb.1 GeneTree:ENSGT00510000048520
InParanoid:A2ADA5 NextBio:409016 Bgee:A2ADA5 Genevestigator:A2ADA5
Uniprot:A2ADA5
Length = 291
Score = 111 (44.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 45/146 (30%), Positives = 65/146 (44%)
Query: 120 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGVVNFRRLVTHAGVT 176
+F W Q LD+ AM +AAQ+L+GTHDF V N V RR+ G
Sbjct: 146 VFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPA 205
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE--- 233
S + + SQ FL+ Q+R + +VL VG G P ++ +++ +
Sbjct: 206 SPFVLPE-GSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPL 264
Query: 234 -KYPRKPVYPMVRGEPLNLYHTEFDN 258
KY + V P RG L L +DN
Sbjct: 265 GKYQAR-VAP-ARG--LFLKSVLYDN 286
Score = 82 (33.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 32/119 (26%), Positives = 51/119 (42%)
Query: 10 YQGFNYHGFQIQTSSDNTIAHHLLKALQKTCL-IEDKEKSSFACCGRTDSGVSAFCQVVT 68
Y G +++G + N A +L L++ + + F RTD+GV A
Sbjct: 20 YLGTDFNG--VAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHALSNAAH 77
Query: 69 LKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFRNYKY 126
L I+ + PG+ E+ K LN +L I+V+ VP + AR R Y+Y
Sbjct: 78 LDIQRR---PGQSPFSPEV-VAKALNTHLKHPAIRVLKAFRVPNDFHARHAATSRTYQY 132
>TIGR_CMR|ECH_0622 [details] [associations]
symbol:ECH_0622 "tRNA pseudouridine synthase A"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
RefSeq:YP_507432.1 ProteinModelPortal:Q2GGK1 STRING:Q2GGK1
GeneID:3927636 KEGG:ech:ECH_0622 PATRIC:20576696 OMA:YSINANR
BioCyc:ECHA205920:GJNR-624-MONOMER Uniprot:Q2GGK1
Length = 245
Score = 144 (55.7 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 69/270 (25%), Positives = 109/270 (40%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
+ I Y G N+ G+Q Q S N+I L A+ K ++ ++ GRTD+GV A Q
Sbjct: 5 ITIEYNGSNFIGWQKQKHSSNSIQEILENAILKF----SQQHTTVYVAGRTDAGVHALGQ 60
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V + + L + N + Y + +P I +++ +K+ ARF R+Y
Sbjct: 61 VAHFDLTTNLDTYVVR---NAINY-----HLIPHAIAILSVEKTDDKFHARFSAKKRHYL 112
Query: 126 Y----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
Y W L+I+ M +A +Y+ G HDF + FR
Sbjct: 113 YKIINRYSPLTIDYNRAWLIHNPLNIENMIQAIEYIKGNHDFSS------------FR-- 158
Query: 170 VTHAGVTSAWQNVQFNDSHHNICEFNIRSQG--FLWHQIRCIMSVLFLVGQGNEKPEIIQ 227
H + + + HN NI FL HQ+R I+ L G+ N PE I+
Sbjct: 159 ARHCQSKNPIKTIDDLKIIHNNQSINIHISAISFLHHQVRIIVGTLVECGKNNFSPEHIK 218
Query: 228 QLVDIEKYPRKPVYPMVRGEPLNLYHTEFD 257
++ + R Y + P LY + D
Sbjct: 219 NILKAKN--RS--YAGMTAPPYGLYFVKVD 244
>TAIR|locus:2024397 [details] [associations]
symbol:AT1G09800 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;TAS] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:RHYRYRI
IPI:IPI00517202 RefSeq:NP_172451.2 UniGene:At.477 UniGene:At.49869
ProteinModelPortal:F4I2L0 SMR:F4I2L0 PRIDE:F4I2L0
EnsemblPlants:AT1G09800.1 GeneID:837510 KEGG:ath:AT1G09800
Uniprot:F4I2L0
Length = 372
Score = 99 (39.9 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 39/124 (31%), Positives = 54/124 (43%)
Query: 8 ILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
I Y G + G Q Q + D T+ L +A K I K C RTD+GV A V
Sbjct: 61 IEYIGTRFSGSQ-QQAKDRTVVGVLQEAFHK--FIGQPVK--IFCSSRTDAGVHALSNVC 115
Query: 68 TLKI-RSKLTSPGEESDDNELPYL-KMLNNNLPR---DIKVVAWSPVPEKYSARFDCLFR 122
+ + R PGE +E + + +N+ L R D+ V+ VP Y AR+ R
Sbjct: 116 HVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQER 175
Query: 123 NYKY 126
Y Y
Sbjct: 176 TYFY 179
Score = 77 (32.2 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 169 LVTHAG-VTSAWQNVQFNDSHHNICEF-NIRSQGFLWHQIRCIMSVLFLVGQGNEKPEII 226
+ T+ G V + + F + C RS+GFL+HQ+R I+ L VG G +
Sbjct: 282 VTTNVGEVEGSTEGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDV 341
Query: 227 QQLVDIEKYPR-KPVYP 242
+++++ + KP+ P
Sbjct: 342 ERILEAKTVSAAKPMAP 358
Score = 52 (23.4 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 127 WFPQAGLDIDAMHKAAQYLVGTHDF 151
W L++ M +A + LVG+HDF
Sbjct: 197 WHVPEELNLRFMQEACRVLVGSHDF 221
>UNIPROTKB|F5GY32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730 GO:GO:0003677
GO:GO:0045944 GO:GO:0003723 GO:GO:0005667 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 EMBL:AC131009
Gene3D:3.30.70.580 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI01009368 ProteinModelPortal:F5GY32 SMR:F5GY32
Ensembl:ENST00000538037 ArrayExpress:F5GY32 Bgee:F5GY32
Uniprot:F5GY32
Length = 154
Score = 126 (49.4 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 34/77 (44%), Positives = 43/77 (55%)
Query: 2 RPIALKILYQGFNYHGFQ--IQTSSDNTIAHHLLKALQKT-CLIE----DKEKSSFACCG 54
R I L + Y G YHG Q + +S TI L+ AL ++ C+ E D K SF C
Sbjct: 56 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCA 115
Query: 55 RTDSGVSAFCQVVTLKI 71
RTD GVSA QVV+LK+
Sbjct: 116 RTDKGVSAAGQVVSLKV 132
>TAIR|locus:2077552 [details] [associations]
symbol:AT3G06950 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:GKSFLWE EMBL:BT029513
IPI:IPI00532571 RefSeq:NP_187351.2 UniGene:At.18751
UniGene:At.40432 ProteinModelPortal:A1A6J3 SMR:A1A6J3 STRING:A1A6J3
EnsemblPlants:AT3G06950.1 GeneID:819880 KEGG:ath:AT3G06950
TAIR:At3g06950 InParanoid:A1A6J3 PhylomeDB:A1A6J3
ProtClustDB:CLSN2690754 Genevestigator:A1A6J3 Uniprot:A1A6J3
Length = 323
Score = 145 (56.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 64/249 (25%), Positives = 103/249 (41%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I Y G + G+Q Q S TI L KAL + + KE GRTD+GV A+ Q
Sbjct: 45 LVIAYDGTRFAGWQYQESPP-TIQSMLEKALIQITELGRKELQLIGA-GRTDAGVHAWGQ 102
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYK 125
V TS D+ + LN LP+DI+V S ++ ARF + Y+
Sbjct: 103 VAHFVTPFNYTSL-----DS---FHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYR 154
Query: 126 YW-FPQAGLDIDAMHKA--AQYLVGTHDFRNLCKMNVGNGVVN-FRRLVTHAGVTSAWQN 181
Y + +D H A Y + R + VG + F GV +
Sbjct: 155 YQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKT 214
Query: 182 VQFND--SHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD------IE 233
+ D ++ + + GFL+ Q+R ++++L +G+ +I+ +++ +
Sbjct: 215 ISRFDVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLA 274
Query: 234 KYPRKPVYP 242
KY P P
Sbjct: 275 KYTSLPASP 283
>UNIPROTKB|P65846 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248674 ProtClustDB:PRK00021 OMA:TPFRNVH PIR:D70565
RefSeq:NP_217972.2 RefSeq:NP_338087.1 ProteinModelPortal:P65846
SMR:P65846 EnsemblBacteria:EBMYCT00000002601
EnsemblBacteria:EBMYCT00000071399 GeneID:887590 GeneID:922954
KEGG:mtc:MT3562 KEGG:mtu:Rv3455c PATRIC:18129561
TubercuList:Rv3455c Uniprot:P65846
Length = 297
Score = 144 (55.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 56/226 (24%), Positives = 95/226 (42%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAF 63
+ L I Y G ++ G+ Q T+A L AL T + + A GRTD+GV A
Sbjct: 24 LRLDIAYDGTDFAGWAAQVGQ-RTVAGDLDAAL--TTIFRTPVRLRAA--GRTDAGVHAS 78
Query: 64 CQVVTLKIRSKLTS---P--GEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
QV + + + P G D LP L+ L LP D++++ + P + ARF
Sbjct: 79 GQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFS 138
Query: 119 CLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGN----GVVNFRRLVTHAG 174
L R+Y Y A ++ A+Y+ +L M + G+ +F H
Sbjct: 139 ALRRHYVYRLSTAPYGVEPQQ--ARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHRE 196
Query: 175 VTSAWQNVQFNDSHH--NICEFNIRSQGFLWHQIRCIMSVLFLVGQ 218
+ +++Q D + ++ + F W +R ++ L VG+
Sbjct: 197 GATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242
>UNIPROTKB|F1PXJ5 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 OMA:WALPADC GeneTree:ENSGT00510000048520
EMBL:AAEX03003844 Ensembl:ENSCAFT00000030633 Uniprot:F1PXJ5
Length = 303
Score = 129 (50.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 39/117 (33%), Positives = 62/117 (52%)
Query: 120 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT-- 176
+F + W +A LD+DAM +AAQ+L+GTHDFR + G+ + R + A V+
Sbjct: 146 VFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAF--QSAGSPTTSSVRTLRRASVSPD 203
Query: 177 --SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
S + Q H EF RS FL+ Q+R + +VL VG G +P ++ +++
Sbjct: 204 PGSPFVLAQEKRLHFWNLEFESRS--FLYRQVRRMTAVLVAVGLGALRPAQVKVILE 258
Score = 54 (24.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSP 108
F RTD+GV A L ++ + G+ E+ + LN ++ I+V+
Sbjct: 59 FTISSRTDAGVHALSNAAHLDVQRR---SGQPPFSPEV-LAEALNAHVRHPAIRVLQAFR 114
Query: 109 VPEKYSARFDCLFRNYKY 126
VP + AR R Y Y
Sbjct: 115 VPSDFHARHAATSRTYLY 132
>UNIPROTKB|J9P592 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 GeneTree:ENSGT00510000048520 EMBL:AAEX03003844
Ensembl:ENSCAFT00000048781 Uniprot:J9P592
Length = 305
Score = 129 (50.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 39/117 (33%), Positives = 62/117 (52%)
Query: 120 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVT-- 176
+F + W +A LD+DAM +AAQ+L+GTHDFR + G+ + R + A V+
Sbjct: 144 VFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAF--QSAGSPTTSSVRTLRRASVSPD 201
Query: 177 --SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
S + Q H EF RS FL+ Q+R + +VL VG G +P ++ +++
Sbjct: 202 PGSPFVLAQEKRLHFWNLEFESRS--FLYRQVRRMTAVLVAVGLGALRPAQVKVILE 256
Score = 54 (24.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSP 108
F RTD+GV A L ++ + G+ E+ + LN ++ I+V+
Sbjct: 57 FTISSRTDAGVHALSNAAHLDVQRR---SGQPPFSPEV-LAEALNAHVRHPAIRVLQAFR 112
Query: 109 VPEKYSARFDCLFRNYKY 126
VP + AR R Y Y
Sbjct: 113 VPSDFHARHAATSRTYLY 130
>TAIR|locus:2065748 [details] [associations]
symbol:AT2G30320 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0008033 EMBL:AC002338
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00537336 PIR:A84707 RefSeq:NP_180591.1 UniGene:At.38371
ProteinModelPortal:O22928 PaxDb:O22928 PRIDE:O22928
EnsemblPlants:AT2G30320.1 GeneID:817582 KEGG:ath:AT2G30320
TAIR:At2g30320 HOGENOM:HOG000070648 InParanoid:O22928 OMA:IRKMVGT
PhylomeDB:O22928 ProtClustDB:PLN03078 Genevestigator:O22928
GermOnline:AT2G30320 Uniprot:O22928
Length = 510
Score = 132 (51.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 44/162 (27%), Positives = 70/162 (43%)
Query: 2 RPIALKILYQGFNYHGFQIQTS--SDNTIAHHLLKALQKTCLIEDKE-----KSSFACCG 54
+ + ++I Y G +Y G QIQ S TI L A+ K I D K +A
Sbjct: 63 KKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSS 122
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYS 114
RTD GV + ++LK+ T+ ++ L K ++ +LP +I+V + P ++
Sbjct: 123 RTDKGVHSLATSISLKMEIPETAWKDDPQGTVLA--KCISKHLPENIRVFSVLPSNRRFD 180
Query: 115 ARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCK 156
R +C R Y Y P L I + + DF + K
Sbjct: 181 PRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILK 222
Score = 50 (22.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 193 EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
E +I + F+ HQIR ++ V + +II+ + + K+ R V P+ E L L
Sbjct: 345 EISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIR--LSLNKFTRI-VLPLAPSEVLILR 401
Query: 253 HTEFD 257
F+
Sbjct: 402 GNSFE 406
>TIGR_CMR|DET_0504 [details] [associations]
symbol:DET_0504 "tRNA pseudouridine synthase A"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:YSINANR
RefSeq:YP_181248.1 ProteinModelPortal:Q3Z951 STRING:Q3Z951
GeneID:3230211 KEGG:det:DET0504 PATRIC:21608077
ProtClustDB:CLSK837466 BioCyc:DETH243164:GJNF-504-MONOMER
Uniprot:Q3Z951
Length = 248
Score = 133 (51.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 69/231 (29%), Positives = 93/231 (40%)
Query: 6 LKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQ 65
L I Y+G Y GFQ+Q TI L A++K E++ + GRTD+GV A Q
Sbjct: 3 LVIEYEGTRYSGFQVQDKGA-TIQGELETAIRKLT----SEQTRVSGSGRTDAGVHAAYQ 57
Query: 66 VVTLKIRSKLTSPGEESDDNELPYLKM-LNNNLPRDIKVVAWSPVPEKYSARFDCLFRNY 124
VV+ S L G L +K LN LP DI V V E + R + R Y
Sbjct: 58 VVSYLSESSL---G-------LDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRRAISREY 107
Query: 125 KY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRR 168
Y W LDI M +A + L G HDF ++G + R
Sbjct: 108 SYQILNSKTRSPLARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFAS-SLGPEIKKTVR 166
Query: 169 LVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
V W + + FNI + FL HQ+R + L +G+G
Sbjct: 167 RVN-------WTRLGIREDR---LIFNIEANSFLTHQVRNTIGTLVELGRG 207
>FB|FBgn0038811 [details] [associations]
symbol:CG4159 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE014297 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
RefSeq:NP_001163664.1 UniGene:Dm.27944 ProteinModelPortal:E1JIR1
SMR:E1JIR1 EnsemblMetazoa:FBtr0302323 GeneID:42440
KEGG:dme:Dmel_CG4159 FlyBase:FBgn0038811 PhylomeDB:E1JIR1
GenomeRNAi:42440 NextBio:828799 Bgee:E1JIR1 Uniprot:E1JIR1
Length = 442
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 70/283 (24%), Positives = 118/283 (41%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQK-TCLIEDK-EKSSFAC---CGRTDSG 59
A+ + Y G NY+G Q + TI L KA+ K + ED E+ +C RTD G
Sbjct: 105 AILLSYCGANYYGMQ-RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKG 163
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
VSA QV ++K+ P EE D L+ N +LP+ I++ V + ++A+ C
Sbjct: 164 VSAARQVCSVKL------P-EELD------LEAFNADLPQQIRLFGVERVTKGFNAKDQC 210
Query: 120 LFRNYKYWFPQAGL-----DIDAMHKAAQYLVGTHDFRNLCK-MNVGNGVVNFRRLVTHA 173
R Y Y P +D +H + + + + + + + G NF +
Sbjct: 211 NARTYTYTLPTVAFAPFEEKVDDVHDT--FRISPELLQKVKETLKLYEGTKNFHNFTSKK 268
Query: 174 GVTSAWQN---VQFNDSHH----NICEF---NIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ F S EF ++ Q F+ HQIR ++ + + +GN
Sbjct: 269 SFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTA 328
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYDEI 266
+++ + E+ P+ P + G L+ H E N + D I
Sbjct: 329 ATLERALTEERLDL-PMAPGL-GLVLDTVHYERYNDRYGKDGI 369
>UNIPROTKB|Q8N0Z8 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase-like 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 EMBL:AL139287
EMBL:CH471183 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 EMBL:AK075292 EMBL:AK298218
EMBL:BC034304 IPI:IPI00166125 IPI:IPI00915388 RefSeq:NP_699170.1
UniGene:Hs.400659 ProteinModelPortal:Q8N0Z8 SMR:Q8N0Z8
STRING:Q8N0Z8 PhosphoSite:Q8N0Z8 DMDM:52783232 PRIDE:Q8N0Z8
DNASU:126789 Ensembl:ENST00000379031 GeneID:126789 KEGG:hsa:126789
UCSC:uc001aed.3 UCSC:uc010nyi.2 CTD:126789 GeneCards:GC01P001233
HGNC:HGNC:26914 HPA:HPA032057 neXtProt:NX_Q8N0Z8
PharmGKB:PA134947837 HOGENOM:HOG000248674 HOVERGEN:HBG053770
InParanoid:Q8N0Z8 OMA:WALPADC OrthoDB:EOG4P5K9S PhylomeDB:Q8N0Z8
ChiTaRS:PUSL1 GenomeRNAi:126789 NextBio:81916 Bgee:Q8N0Z8
CleanEx:HS_PUSL1 Genevestigator:Q8N0Z8 GermOnline:ENSG00000169972
Uniprot:Q8N0Z8
Length = 303
Score = 112 (44.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 34/112 (30%), Positives = 51/112 (45%)
Query: 122 RNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGVVNFRRLVTHAGVTSAW 179
RN + P LD+ AM +AAQ+L+GTHDF V + V RR+ G S
Sbjct: 149 RNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPL 208
Query: 180 QNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ SQ FL+ Q+R + +VL VG G P ++ +++
Sbjct: 209 VTPE-ESRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILE 259
Score = 63 (27.2 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 28/120 (23%), Positives = 49/120 (40%)
Query: 10 YQGFNYHGFQIQTSSDNTIA--HHLLKALQKTCLIEDKEKSSFACCGRTDSGVSAFCQVV 67
Y G +++G + + ++L +A ++ + E F RTD+GV A
Sbjct: 20 YVGTDFNGVAAVRGTQRAVGVQNYLEEAAER---LNSVEPVRFTISSRTDAGVHALSNAA 76
Query: 68 TLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSPVPEKYSARFDCLFRNYKY 126
L ++ + G E+ + LN +L I+V+ VP + AR R Y Y
Sbjct: 77 HLDVQRR---SGRPPFPPEV-LAEALNTHLRHPAIRVLRAFRVPSDFHARHAATSRTYLY 132
>UNIPROTKB|A6QP68 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9913
"Bos taurus" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000248674 HOVERGEN:HBG053770
OMA:WALPADC OrthoDB:EOG4P5K9S GeneTree:ENSGT00510000048520
EMBL:DAAA02043243 EMBL:BC149176 IPI:IPI00698369 UniGene:Bt.62155
STRING:A6QP68 Ensembl:ENSBTAT00000044945 InParanoid:A6QP68
Uniprot:A6QP68
Length = 312
Score = 113 (44.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 120 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS- 177
+F + W QA LD+ AM +AAQ+L+GTHDF + G+ + R + A V+
Sbjct: 167 VFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAF--QSAGSPASSPVRTLRRASVSPD 224
Query: 178 -AWQNVQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
A V +S SQ FL+ Q+R + +VL VG G P ++ +++
Sbjct: 225 PASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGALMPAQVKAILE 280
Score = 61 (26.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSP 108
F RTD+GV A L I+ + P + + LN +L I+V+
Sbjct: 80 FTISSRTDAGVHALSNAAHLDIQRRSDLPPFSPE----VLTEALNTHLKHPAIRVLQAFR 135
Query: 109 VPEKYSARFDCLFRNYKY 126
VP + AR + R Y Y
Sbjct: 136 VPSHFHARHAAISRTYLY 153
>TIGR_CMR|NSE_0020 [details] [associations]
symbol:NSE_0020 "tRNA pseudouridine synthase A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
RefSeq:YP_505923.1 ProteinModelPortal:Q2GF33 STRING:Q2GF33
GeneID:3932291 KEGG:nse:NSE_0020 PATRIC:22680151
ProtClustDB:CLSK2528006 BioCyc:NSEN222891:GHFU-58-MONOMER
Uniprot:Q2GF33
Length = 243
Score = 130 (50.8 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 65/237 (27%), Positives = 99/237 (41%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR A+ + Y G + G+Q Q S+ + + L L + L+ KEK + GRTD+GV
Sbjct: 1 MRYKAI-VEYVGTGFSGWQKQMSAPS-VQEELESVL--SFLL--KEKIAVNVAGRTDAGV 54
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A QV R P + N + Y L L +K+ V E + ARF +
Sbjct: 55 HALGQVFHFDARESTLQPFQIV--NAVNY--HLKEKLIVLLKIEI---VDETFDARFSAI 107
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNL--CKMNVGNG 162
R+Y+Y W L++D + + AQYLVG HDF++ K N
Sbjct: 108 RRHYQYKITNRKTPLAVFKNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCGASNA 167
Query: 163 VVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQG 219
+ RL V+ N F+ ++ FL HQ+R ++ L + G
Sbjct: 168 IRTLDRL-----------EVEKNGEE---MIFHASAKSFLHHQVRIMVGTLVAIASG 210
>UNIPROTKB|F1RJE9 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9823
"Sus scrofa" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:FP102596
Ensembl:ENSSSCT00000003707 Uniprot:F1RJE9
Length = 302
Score = 108 (43.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 34/116 (29%), Positives = 57/116 (49%)
Query: 120 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSA 178
+F + W +A LD+ AM +AAQ+L+GTHDF + G+ + R + A V+
Sbjct: 146 VFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAF--QSTGSPATSPVRTLRRASVSPE 203
Query: 179 WQN--VQFNDSHH-NICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
+ V +S SQ FL+ Q+R + +VL VG G P ++ +++
Sbjct: 204 PSSPLVLPGESRGLRFWSLEFESQSFLYRQVRRMTAVLVAVGLGALTPAQVKMILE 259
Score = 64 (27.6 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 23/78 (29%), Positives = 34/78 (43%)
Query: 50 FACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSP 108
F RTD+GV A L I+ + G+ E+ + LN +L I+V+
Sbjct: 59 FTISSRTDAGVHALSNAAHLDIQRR---SGQPPFSPEV-LTEALNTHLRHPAIRVLQAFR 114
Query: 109 VPEKYSARFDCLFRNYKY 126
VP + AR+ R Y Y
Sbjct: 115 VPSHFHARYAATSRTYLY 132
>UNIPROTKB|F1LXZ7 [details] [associations]
symbol:Pusl1 "tRNA pseudouridine synthase" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00359178 Ensembl:ENSRNOT00000036307 ArrayExpress:F1LXZ7
Uniprot:F1LXZ7
Length = 217
Score = 112 (44.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 36/115 (31%), Positives = 52/115 (45%)
Query: 120 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGVVNFRRLVTHAGVT 176
+F W Q LDI AM +AAQ+L+GTHDF V + V RR+ G
Sbjct: 80 VFEQNVCWSLQTEYLDIAAMQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPA 139
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
S + Q SQ FL+ Q+R + +VL VG G P ++ +++
Sbjct: 140 SLFVLPQ-ESRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILE 193
Score = 52 (23.4 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVVAWSPVPEKYSAR 116
+GV A L I+ + PG E+ K LN +L I+V+ VP + AR
Sbjct: 1 AGVHALSNAAHLDIQRR---PGRPPFSPEI-VTKALNTHLKHPAIRVLKAFRVPNDFHAR 56
Query: 117 FDCLFRNYKY 126
R Y Y
Sbjct: 57 HAATSRTYLY 66
>DICTYBASE|DDB_G0290987 [details] [associations]
symbol:pus1 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0290987
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AAFI02000174 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_635437.1 ProteinModelPortal:Q54FA0
EnsemblProtists:DDB0231224 GeneID:8627937 KEGG:ddi:DDB_G0290987
InParanoid:Q54FA0 OMA:VEMVSIN Uniprot:Q54FA0
Length = 596
Score = 104 (41.7 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 42/134 (31%), Positives = 62/134 (46%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED-----KEKSSFACCGRT 56
+ +A+ + Y G NY G Q + T+ L AL +T I ++K + C RT
Sbjct: 140 KKVAIILGYSGTNYAGMQ-KNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCART 198
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKM-LNNNLPRDIKVVAWSPVPEKYSA 115
D GVSA VV+LK+ ++ P E +K+ LN LP+DI V V + A
Sbjct: 199 DKGVSAIRNVVSLKM--EMGPPDFEG-------MKIALNKELPKDITVFHIMRVNNSFHA 249
Query: 116 RFDCLFRNYKYWFP 129
+ R+Y Y P
Sbjct: 250 KNAVDARSYIYVTP 263
Score = 75 (31.5 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 43/178 (24%), Positives = 74/178 (41%)
Query: 135 IDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEF 194
+ ++K + +G H F N N V FR++ H+ V S F +
Sbjct: 301 LSILNKVLSFYLGNHRFHNYTSRKESNDVSVFRKI--HSFVCSE----PFVLEGVEMVSI 354
Query: 195 NIRSQGFLWHQIRCIMSVLF-LVGQGN-EKPEIIQQLVD-IEKY-----PRKPV-YPMVR 245
N+ + F+ HQIR ++ L + +G E E Q D I+ Y P+ PM
Sbjct: 355 NVVGESFMLHQIRKMIGCLISFIRKGMFEDCETRDQAFDQIKAYINSTFEHTPLNLPMAP 414
Query: 246 GEPLNLYHTEFDNLTWHYDEIEVSHVLRDLHEDWSLLSIKATMLGE--MIKDTVRESK 301
G L L + F+ W+ + + L+ + D + K T+ E +++ T +E K
Sbjct: 415 GAGLLLDYCIFNE--WNKNNSSIHGELK-IESD-QVEEFKKTIYREIALLESTKKEFK 468
>UNIPROTKB|F5H1S9 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI00795171 ProteinModelPortal:F5H1S9 SMR:F5H1S9 PRIDE:F5H1S9
Ensembl:ENST00000542167 UCSC:uc001uji.3 ArrayExpress:F5H1S9
Bgee:F5H1S9 Uniprot:F5H1S9
Length = 374
Score = 131 (51.2 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 68/277 (24%), Positives = 115/277 (41%)
Query: 20 IQTSSDNTIAHHLLKALQKT-CLIE----DKEKSSFACCGRTDSGVSAFCQVVTLKIRSK 74
+ +S TI L+ AL ++ C+ E D K SF C RTD GVSA QVV+LK+
Sbjct: 51 VGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWL- 109
Query: 75 LTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCLFRNYKYWFPQ---A 131
DD L+ +N++LP I+++ V ++++ C R Y Y P A
Sbjct: 110 -------IDD----ILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFA 158
Query: 132 GLDIDAMHKAAQYLVGTHDFRNLCKMNVG-NGVVNFRRLVTHAGVT--SAWQNV------ 182
D D + Y + + + ++ G NF + G SA + +
Sbjct: 159 HKDRDVQDET--YRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYCE 216
Query: 183 -QFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY--PRKP 239
F ++ Q F+ HQIR ++ ++ + +G ++++ EK P+ P
Sbjct: 217 EPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAP 276
Query: 240 VYPMVRGEP-LNLYHTEFDN------LTWHYDEIEVS 269
+V Y+ F N L W +E +V+
Sbjct: 277 GLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVA 313
>TIGR_CMR|GSU_2877 [details] [associations]
symbol:GSU_2877 "tRNA pseudouridine synthase A"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:NP_953919.1 ProteinModelPortal:P60350
GeneID:2688667 KEGG:gsu:GSU2877 PATRIC:22028615
BioCyc:GSUL243231:GH27-2866-MONOMER Uniprot:P60350
Length = 244
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 64/246 (26%), Positives = 100/246 (40%)
Query: 1 MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
MR I L + Y G NY G+Q+Q + +I + AL + L+ KE GRTD+GV
Sbjct: 1 MRTIKLILEYDGTNYAGWQLQPNG-LSIQEVVEGALAR--LL--KEPVRLRASGRTDAGV 55
Query: 61 SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
A V + P D LN LP DI V + ++ RF
Sbjct: 56 HARGMVAAFDTDRSI--PLRAFSDG-------LNALLPPDIAVRSADEALPGFNPRFAAT 106
Query: 121 FRNYKY----------------WFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVV 164
++Y+Y W + L++ AM +AA++L G DF +
Sbjct: 107 GKHYRYTIHRGERRSPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCA-ART 165
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
RR+ V+ +D + ++ GFL + +R ++ L VG+G PE
Sbjct: 166 TIRRV----------DAVEISDDGEMLT-VDVHGSGFLRNMVRIMVGTLVEVGRGKLTPE 214
Query: 225 IIQQLV 230
+ Q+V
Sbjct: 215 HVAQMV 220
>WB|WBGene00004248 [details] [associations]
symbol:pus-1 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL021572 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
HOGENOM:HOG000031229 OMA:CDARTYF UniGene:Cel.1992 GeneID:180123
KEGG:cel:CELE_W06H3.2 UCSC:W06H3.2a CTD:180123 NextBio:908172
PIR:T26253 RefSeq:NP_507242.1 ProteinModelPortal:Q9XXN0 SMR:Q9XXN0
STRING:Q9XXN0 PRIDE:Q9XXN0 EnsemblMetazoa:W06H3.2a.1
EnsemblMetazoa:W06H3.2a.2 WormBase:W06H3.2a InParanoid:Q9XXN0
ArrayExpress:Q9XXN0 Uniprot:Q9XXN0
Length = 415
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 79/340 (23%), Positives = 133/340 (39%)
Query: 5 ALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSS-----FACCGRTDSG 59
A+ + YQG Y+G Q+Q TI LL+A++ I +K F RTD
Sbjct: 36 AMLLGYQGKKYYGMQLQKDLP-TIESKLLEAMETAGWITTAQKEKPFDFFFQRAARTDRA 94
Query: 60 VSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDC 119
VSA Q+ +++ P +++ + +LNN LP DI+V + + C
Sbjct: 95 VSAARQMCGMQL------PRDDAK-YQAEGAGILNNILPADIRVFGMRRTTNFFHPQKQC 147
Query: 120 LFRNYKYWFPQA-------------GLDIDAMHKAAQYL---VGTHDFRNLCKMNVGNGV 163
R Y Y P L + + + L +GTH+F N + +
Sbjct: 148 DHRTYSYTCPSFVFAKPTELTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYDDM 207
Query: 164 VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKP 223
+ R +++ F + I+ Q F+ HQIR ++ ++ V +
Sbjct: 208 SSNRYIISFECKEPFLFRDDFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELHLK 267
Query: 224 EIIQQLVDIEKYPRKPVYPMVRGEPLNLYHTEFDNLTWHYD-EIEVSHVLRDLHEDWSLL 282
IQ+ + ++ PM G L L T +D+ YD + SH L DW +
Sbjct: 268 SSIQRSFEGQRMD----IPMAPGLGLLLERTHYDS----YDRKNSKSH--EPL-TDWGEI 316
Query: 283 ---SIKATMLGEMIKDTVRESKCTMGDLD-INHLIEGEFS 318
I+ T + KD + T G L + L+ +F+
Sbjct: 317 IEKEIERTKFELITKDMIETELLTQGMLKWLADLVHHDFT 356
>TAIR|locus:2012898 [details] [associations]
symbol:AT1G20370 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AC026234 eggNOG:COG0101 KO:K06173 OMA:IRKMISM
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 EMBL:AY035176 EMBL:AY059123 IPI:IPI00538439
PIR:E86337 RefSeq:NP_564112.1 UniGene:At.21336
ProteinModelPortal:Q9LN29 STRING:Q9LN29 PaxDb:Q9LN29 PRIDE:Q9LN29
EnsemblPlants:AT1G20370.1 GeneID:838625 KEGG:ath:AT1G20370
TAIR:At1g20370 HOGENOM:HOG000030790 InParanoid:Q9LN29
PhylomeDB:Q9LN29 ProtClustDB:CLSN2917029 ArrayExpress:Q9LN29
Genevestigator:Q9LN29 Uniprot:Q9LN29
Length = 549
Score = 114 (45.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 43/147 (29%), Positives = 66/147 (44%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSS-----FACCGRT 56
R +A+ + G Y G Q + TI L +AL + D +++ +A RT
Sbjct: 58 RKVAIVFAFCGVGYQGMQ-KNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSART 116
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSAR 116
D GVSA QVV+ R + PG +++ LN+ LP I+V + V +S++
Sbjct: 117 DKGVSAVGQVVSG--RFYVDPPG---------FVERLNSKLPDQIRVFGYKRVAPSFSSK 165
Query: 117 FDCLFRNYKYWFPQAGLDIDAMHKAAQ 143
C R Y Y P LD +H A+
Sbjct: 166 KFCDRRRYVYLIPVFALD-PCVHGEAE 191
Score = 52 (23.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 136 DAMHKAAQYLVGTHDFRNLC-KMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEF 194
+ ++ Y VG+H+F N + + N R +++ T N+ D CE
Sbjct: 319 ERFNRILSYYVGSHNFHNFTTRTKAADPAAN-RYILSFNANTVI--NLDGKDFVK--CE- 372
Query: 195 NIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
+ Q F+ HQIR ++ + + + N PE
Sbjct: 373 -VVGQSFMLHQIRKMIGLAVAIMR-NYAPE 400
>UNIPROTKB|E9PNY6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020103
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 EMBL:AP000842
GO:GO:0031119 Gene3D:3.30.70.580 PANTHER:PTHR11142 HGNC:HGNC:25461
IPI:IPI00982332 ProteinModelPortal:E9PNY6 SMR:E9PNY6
Ensembl:ENST00000529801 ArrayExpress:E9PNY6 Bgee:E9PNY6
Uniprot:E9PNY6
Length = 105
Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIE 43
R +AL+I Y G+ Y GF Q +++NTI L +AL KT L+E
Sbjct: 63 RHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVE 104
>RGD|1559560 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00779525 Ensembl:ENSRNOT00000055334 ArrayExpress:F1M9T7
Uniprot:F1M9T7
Length = 278
Score = 86 (35.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 29/90 (32%), Positives = 38/90 (42%)
Query: 120 LFRNYKYWFPQAG-LDIDAMHKAAQYLVGTHDFRNLCKMN--VGNGVVNFRRLVTHAGVT 176
+F W Q LDI AM +AAQ+L+GTHDF V + V RR+ G
Sbjct: 111 VFEQNVCWSLQTEYLDIAAMQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPA 170
Query: 177 SAWQNVQFNDSHHNICEFNIRSQGFLWHQI 206
S + Q SQ FL+ Q+
Sbjct: 171 SLFVLPQ-ESRRLQFWTLEFESQSFLYRQV 199
Score = 73 (30.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 26/82 (31%), Positives = 34/82 (41%)
Query: 46 EKSSFACCGRTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD-IKVV 104
E F RTD+GV A L I+ + PG E+ K LN +L I+V+
Sbjct: 20 EPVRFTISSRTDAGVHALSNAAHLDIQRR---PGRPPFSPEI-VTKALNTHLKHPAIRVL 75
Query: 105 AWSPVPEKYSARFDCLFRNYKY 126
VP + AR R Y Y
Sbjct: 76 KAFRVPNDFHARHAATSRTYLY 97
>POMBASE|SPCC126.03 [details] [associations]
symbol:pus1 "tRNA pseudouridine synthase Lsp1"
species:4896 "Schizosaccharomyces pombe" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IGI;IDA] [GO:0006400 "tRNA
modification" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PomBase:SPCC126.03 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0006400
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AJ251329
PIR:T40907 RefSeq:NP_588446.1 ProteinModelPortal:O94396
STRING:O94396 EnsemblFungi:SPCC126.03.1 GeneID:2539082
KEGG:spo:SPCC126.03 eggNOG:COG0101 HOGENOM:HOG000213984 KO:K06173
OMA:IRKMISM OrthoDB:EOG48KVMJ NextBio:20800254 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Uniprot:O94396
Length = 534
Score = 105 (42.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 39/135 (28%), Positives = 61/135 (45%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLI-----EDKEKSSFACCGRT 56
R +A + Y G YHG Q+ S TI L A K + +D +K + A RT
Sbjct: 44 RKVACLVGYCGSGYHGMQLNPPS-KTIEGDLFDAFVKAGAVSSYNADDPKKVALARAART 102
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVP--EKYS 114
D GV A V++LK+ +D +L ++ +N +LP I++ W + ++
Sbjct: 103 DKGVHAAGNVISLKLIM---------EDEKL--IEKVNEHLPPSIRL--WDVIRTINSFN 149
Query: 115 ARFDCLFRNYKYWFP 129
R C R Y+Y P
Sbjct: 150 PRTYCESRIYEYMVP 164
Score = 59 (25.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 143 QYLVGTHDFRNLCKMNVGNGV--VNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQG 200
QY VG H+F N VG N R++ + + D+ C+ + Q
Sbjct: 330 QY-VGVHNFHNF---TVGQAFHQKNSNRVIRSFTASDPFM---IGDTEWISCK--VHGQS 380
Query: 201 FLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKY--PRKPVYPMVRGEP 248
F+ HQIR ++++ LV + E IQ K P+ P + ++ P
Sbjct: 381 FMLHQIRKMIALAILVVRTGCPVERIQDAFKKTKINIPKGPGFGLLLESP 430
>DICTYBASE|DDB_G0281619 [details] [associations]
symbol:DDB_G0281619 "tRNA pseudouridine synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0281619
GO:GO:0003723 EMBL:AAFI02000042 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 ProtClustDB:CLSZ2846682
RefSeq:XP_640538.1 ProteinModelPortal:Q54TQ3
EnsemblProtists:DDB0304450 GeneID:8623148 KEGG:ddi:DDB_G0281619
InParanoid:Q54TQ3 OMA:FINGHIA Uniprot:Q54TQ3
Length = 504
Score = 112 (44.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 35/159 (22%), Positives = 68/159 (42%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTC------LIEDKEKSSFACCGRTD 57
+A+ Y G Y+G Q +L++ + C + + ++ ++ RTD
Sbjct: 91 VAMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHSSRTD 150
Query: 58 SGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARF 117
GV + V++ + + +D ++ +NN LP I++ + V + AR
Sbjct: 151 KGVHSLATVISCFL---VVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRSFQARK 207
Query: 118 DCLFRNYKYWFPQAGLD---IDAMHKAAQYLVGTHDFRN 153
+ R+Y Y P L+ ID M+K Q +G + + N
Sbjct: 208 KGIERSYNYMVPSEYLNNIKIDEMNKILQNFIGINSYHN 246
Score = 50 (22.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 193 EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLNLY 252
+F I + F+ +QIR ++ + +G E ++ + K P P PL L+
Sbjct: 332 KFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSL---KSPFSICVPTAPPFPLYLF 388
Query: 253 HTEFD 257
+ +FD
Sbjct: 389 NVKFD 393
>UNIPROTKB|J3KTG4 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL139287 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.660 PANTHER:PTHR11142
HGNC:HGNC:26914 ChiTaRS:PUSL1 Ensembl:ENST00000467712
Uniprot:J3KTG4
Length = 126
Score = 96 (38.9 bits), Expect = 0.00030, P = 0.00030
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 137 AMHKAAQYLVGTHDFRNLCKMN--VGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEF 194
AM +AAQ+L+GTHDF V + V RR+ G S +
Sbjct: 3 AMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVTPE-ESRKLRFWNL 61
Query: 195 NIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVD 231
SQ FL+ Q+R + +VL VG G P ++ +++
Sbjct: 62 EFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILE 98
>DICTYBASE|DDB_G0283061 [details] [associations]
symbol:DDB_G0283061 "tRNA pseudouridine synthase truA
family" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0283061 GO:GO:0003723 EMBL:AAFI02000049
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 RefSeq:XP_639285.1 ProteinModelPortal:Q54RR6
STRING:Q54RR6 EnsemblProtists:DDB0218427 GeneID:8623854
KEGG:ddi:DDB_G0283061 InParanoid:Q54RR6 OMA:SISHIKI
ProtClustDB:CLSZ2728984 Uniprot:Q54RR6
Length = 343
Score = 83 (34.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 165 NFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPE 224
N R T+ + +N+ ++ I+++ FL +Q+R +++ L VG+G E
Sbjct: 213 NISRSNTNYPIGDGEKNLDKKNTGLQYFGIEIKARAFLHNQVRIMVASLIKVGEG----E 268
Query: 225 I-IQQLVDI-EKYPRKPVYPMVRGEPLNLYHTEFDN 258
I IQQL +I +K R P EPL L +D+
Sbjct: 269 ISIQQLEEIKDKKDRGAAPPTASPEPLTLLTVSYDD 304
Score = 76 (31.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKM-LNNNLPRD----IKVVAWSPV 109
RTD GVSA QV ++++ + G E L M +N N+ ++ I+++ V
Sbjct: 54 RTDHGVSAVGQVSHFDVKTRTSKSGIEMPLLSPEELTMAINYNVGKEYLKSIRIIKTEIV 113
Query: 110 PEKYSARFDCLFRNYKY 126
+K+ RF+ R Y Y
Sbjct: 114 DDKFHCRFNATSRTYLY 130
>FB|FBgn0083976 [details] [associations]
symbol:CG34140 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:AE014296 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
GeneTree:ENSGT00510000048520 EMBL:BT088434 RefSeq:NP_001036574.1
UniGene:Dm.21318 SMR:Q0E8K6 STRING:Q0E8K6
EnsemblMetazoa:FBtr0110975 GeneID:4379908 KEGG:dme:Dmel_CG34140
FlyBase:FBgn0083976 InParanoid:Q0E8K6 OMA:HHDFSSF OrthoDB:EOG4CNP7D
NextBio:855816 Uniprot:Q0E8K6
Length = 306
Score = 94 (38.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 126 YWFPQAGLDIDAMHKAAQYLVGTHDFRN--------LCKMNVGNGVVNFRRLVTHAGVTS 177
Y+ + DI + AA+ +G HDFR +C+ + V + G T
Sbjct: 161 YFLQSSSFDIKRVQAAARMFIGVHDFRTFMSVSRQKVCRDHPMFTVRKIDEINIRPGETR 220
Query: 178 AWQN--VQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDI 232
A + +Q +++ N + IR++ FL+ Q+R I+ L +G G + Q++ +
Sbjct: 221 ALSSNAIQAAETY-NYWDIEIRAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTV 276
Score = 61 (26.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 55 RTDSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRD---IKVVAWSPVPE 111
RTD+GV A V + L P + D + +LN L + I+V++ V
Sbjct: 59 RTDAGVHALHSTVQVD----LERPNGQPYDTTI-LTGVLNRTLNKQRLPIRVLSSKLVAN 113
Query: 112 KYSARFDCLFRNYKYWFPQA 131
+ R+D + R Y Y F A
Sbjct: 114 SFHCRYDAIGRTYLYRFAVA 133
>TAIR|locus:2199726 [details] [associations]
symbol:AT1G76120 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684 GO:GO:0003723
GO:GO:0008033 EMBL:AC009978 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000030790
EMBL:AY086381 EMBL:AY123978 EMBL:BT000606 IPI:IPI00531649
RefSeq:NP_565126.1 UniGene:At.34703 ProteinModelPortal:Q9SGS1
EnsemblPlants:AT1G76120.1 GeneID:843944 KEGG:ath:AT1G76120
TAIR:At1g76120 InParanoid:Q9SGS1 OMA:HIGATER PhylomeDB:Q9SGS1
ProtClustDB:CLSN2689226 Genevestigator:Q9SGS1 Uniprot:Q9SGS1
Length = 463
Score = 110 (43.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 41/136 (30%), Positives = 60/136 (44%)
Query: 4 IALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIED----KEKS-SFACCGRTDS 58
+A+ + G Y G Q + TI L +AL + + K K FA RTD
Sbjct: 24 VAIIFAFCGVGYQGMQ-KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTDK 82
Query: 59 GVSAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFD 118
GVSA QVV+ + + P L ++ LN+NLP I++ + V +S++
Sbjct: 83 GVSAVGQVVSGRF---IVDP--------LGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKF 131
Query: 119 CLFRNYKYWFPQAGLD 134
C R Y Y P LD
Sbjct: 132 CDRRRYVYLLPVFALD 147
Score = 47 (21.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 26/125 (20%), Positives = 53/125 (42%)
Query: 146 VGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTSAWQNVQFNDSHHNICEFNIRSQGFLWHQ 205
VG+++F N + R++++ T N+ D CE + + F+ HQ
Sbjct: 276 VGSYNFHNFTTRTKADDPTANRQIISFTANTVI--NLDGIDFIK--CE--VLGKSFMLHQ 329
Query: 206 IRCIMSVLFLVGQGNEKPEIIQQLVDIEKYPRKPVYPMVRGEPLN-LYHTEFD-NLTWHY 263
IR +M + + + +IQ + P+ P V G L+ + T ++ N +
Sbjct: 330 IRKMMGLAVAIMRNCASESLIQSAFSKDVNITVPMAPEV-GLYLDECFFTSYNRNFEDSH 388
Query: 264 DEIEV 268
+E+ +
Sbjct: 389 EEVSM 393
>POMBASE|SPCC16C4.06c [details] [associations]
symbol:SPCC16C4.06c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPCC16C4.06c GO:GO:0005634 GO:GO:0005737 EMBL:CU329672
GO:GO:0003723 GO:GO:0006400 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:CFISSES PIR:T41096 RefSeq:NP_587916.1
ProteinModelPortal:O74451 EnsemblFungi:SPCC16C4.06c.1
GeneID:2539359 KEGG:spo:SPCC16C4.06c NextBio:20800524
Uniprot:O74451
Length = 413
Score = 98 (39.6 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 37/138 (26%), Positives = 60/138 (43%)
Query: 2 RPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKT-CLIE---DKEKSSFAC-CGRT 56
R + + Y+G + G Q + TI L +A + +++ D K C RT
Sbjct: 37 RMVYCVVSYRGTGFAGLQYNANV-KTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAART 95
Query: 57 DSGVSAFCQVVTLKIRSKLTSPGEESDDNELPYL-KMLNNNLPRDIKVVAWSPVPEKYSA 115
D GV A V+ LK+ D+ LP++ ++N+ LP I+V + +S
Sbjct: 96 DKGVHAIVNVLGLKVL----------DNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSP 145
Query: 116 RFDCLFRNYKYWFPQAGL 133
C R Y+YW P + L
Sbjct: 146 HTVCDSRVYEYWLPVSSL 163
Score = 57 (25.1 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 25/135 (18%), Positives = 52/135 (38%)
Query: 118 DCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRLVTHAGVTS 177
DC+ + F + +D + A GTH F + G + RR + V
Sbjct: 200 DCVANSLSEPFRLSKPKLDFLKHACTMFRGTHRFHSYTTEK-GFSDASSRRFLLDVRV-- 256
Query: 178 AWQNVQFNDSHHNICEFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIE---K 234
N+ + + + Q F+ HQIR ++ +L + + +++ + +
Sbjct: 257 --DNLHIDKLNRQWVKLIFHGQSFMKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIR 314
Query: 235 YPRKPVYPMVRGEPL 249
PR P ++ +P+
Sbjct: 315 IPRAPAEFLLLNQPI 329
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.427 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 335 335 0.00092 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 68
No. of states in DFA: 622 (66 KB)
Total size of DFA: 267 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.73u 0.11s 26.84t Elapsed: 00:00:01
Total cpu time: 26.74u 0.11s 26.85t Elapsed: 00:00:01
Start: Thu Aug 15 15:40:44 2013 End: Thu Aug 15 15:40:45 2013