RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13081
         (335 letters)



>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score =  103 bits (258), Expect = 1e-26
 Identities = 58/262 (22%), Positives = 93/262 (35%), Gaps = 20/262 (7%)

Query: 1   MRPIALKILYQGFNYHGFQIQTSSDNTIAHHLLKALQKTCLIEDKEKSSFACCGRTDSGV 60
           +  IAL I Y G  Y+G+Q Q +   ++   L KAL +       E  +  C GRTD+GV
Sbjct: 3   VYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVA----NEPITVFCAGRTDAGV 57

Query: 61  SAFCQVVTLKIRSKLTSPGEESDDNELPYLKMLNNNLPRDIKVVAWSPVPEKYSARFDCL 120
               QVV  +  +           N      +                VP+ + ARF   
Sbjct: 58  HGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRW---------VKTVPDDFHARFSAT 108

Query: 121 FRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFR---NLCKMNVGNGVVNFRRLVTHAGVTS 177
            R Y+Y      L    + K   +     D        +  +G       R V     T 
Sbjct: 109 ARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP 168

Query: 178 AWQNVQFNDSHHNIC-EFNIRSQGFLWHQIRCIMSVLFLVGQGNEKPEIIQQLVDIEKYP 236
               +  N + H      +I++  F+ H +R I+  L  VG  N+    I +L+  +   
Sbjct: 169 WRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD-- 226

Query: 237 RKPVYPMVRGEPLNLYHTEFDN 258
           R       + E L L   ++ +
Sbjct: 227 RTLAAATAKAEGLYLVAVDYPD 248


>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus
           [TaxId: 274]}
          Length = 156

 Score = 26.2 bits (57), Expect = 4.2
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 158 NVGNGVVNFRRLVTHAGVTSAWQNVQFN--DSHHNICEFNIRSQG 200
           +   GVV +  + TH G   +             +   +++R   
Sbjct: 75  HAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGA 119


>d1sb2a1 d.169.1.1 (A:1-132) Snake coagglutinin alpha chain {Malayan
           pit viper (Calloselasma rhodostoma), rhodocetin [TaxId:
           8717]}
          Length = 132

 Score = 25.5 bits (54), Expect = 6.3
 Identities = 9/87 (10%), Positives = 30/87 (34%)

Query: 110 PEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDFRNLCKMNVGNGVVNFRRL 169
             +       +  N++    ++ + +   +K  +  +   D  ++   N+    +    L
Sbjct: 45  RLEAVFVDMVMENNFENKIYRSWIGLKIENKGQRSNLEWSDGSSISYENLYEPYMEKCFL 104

Query: 170 VTHAGVTSAWQNVQFNDSHHNICEFNI 196
           + H      W      + +  +C+F +
Sbjct: 105 MDHQSGLPKWHTADCEEKNVFMCKFQL 131


>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus
           subtilis [TaxId: 1423]}
          Length = 124

 Score = 24.7 bits (53), Expect = 9.5
 Identities = 9/46 (19%), Positives = 16/46 (34%)

Query: 106 WSPVPEKYSARFDCLFRNYKYWFPQAGLDIDAMHKAAQYLVGTHDF 151
              V      +   +F N K    +AG   + + KA  ++     F
Sbjct: 38  GEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQF 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,290,048
Number of extensions: 60161
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 12
Length of query: 335
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,226,816
Effective search space: 305477184
Effective search space used: 305477184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)