RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13083
(255 letters)
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 345 bits (886), Expect = e-120
Identities = 122/170 (71%), Positives = 143/170 (84%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
+AYKIKYP+NFFLLRGNHECA+INRIYGFYDECKRRY+IKLWKTF+D FNCLPI+A+++
Sbjct: 108 LAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDE 167
Query: 61 TILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYVF 120
I C HGGLSP L +EQI+ I RP VP+ GLLCDLLW+DPD+ V GWG N+RGVS+ F
Sbjct: 168 KIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTF 227
Query: 121 GPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
G +VV FL +HD LI RAHQVVE GY+F A+R L+TLFSAPNYCGEFD
Sbjct: 228 GAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFD 277
Score = 80.8 bits (200), Expect = 5e-18
Identities = 36/53 (67%), Positives = 40/53 (75%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSVAEDLTCCFSILPPIKKR 252
VVE GY+F A+R L+TLFSAPNYCGEFDNAGA +SV E L C F IL P K
Sbjct: 250 VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKN 302
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 343 bits (882), Expect = e-120
Identities = 122/170 (71%), Positives = 143/170 (84%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
+AYKIKYP+NFFLLRGNHECA+INRIYGFYDECKRRY+IKLWKTF+D FNCLPI+A+++
Sbjct: 107 LAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDE 166
Query: 61 TILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYVF 120
I C HGGLSP L +EQI+ I RP VP+ GLLCDLLW+DPD+ V GWG N+RGVS+ F
Sbjct: 167 KIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTF 226
Query: 121 GPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
G +VV FL +HD LI RAHQVVE GY+F A+R L+TLFSAPNYCGEFD
Sbjct: 227 GAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFD 276
Score = 80.7 bits (200), Expect = 4e-18
Identities = 35/49 (71%), Positives = 39/49 (79%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSVAEDLTCCFSILPP 248
VVE GY+F A+R L+TLFSAPNYCGEFDNAGA +SV E L C F IL P
Sbjct: 249 VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 297
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 335 bits (861), Expect = e-116
Identities = 76/171 (44%), Positives = 115/171 (67%), Gaps = 2/171 (1%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRY-SIKLWKTFSDVFNCLPISALIE 59
+A K++Y + +LRGNHE I ++YGFYDEC R+Y + +WK F+D+F+ LP++AL++
Sbjct: 101 VALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160
Query: 60 RTILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYV 119
I C+HGGLSP + ++ I+ + R +VP G +CDLLW+DPD+ GWG + RG Y
Sbjct: 161 GQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDD-RGGWGISPRGAGYT 219
Query: 120 FGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
FG D+ +F + +L+ RAHQ+V +GY + R ++T+FSAPNYC
Sbjct: 220 FGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCG 270
Score = 83.4 bits (207), Expect = 6e-19
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSVAEDLTCCFSILPPIKKR 252
+V +GY + R ++T+FSAPNYC N A + + + L F P +R
Sbjct: 243 LVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRR 295
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 323 bits (831), Expect = e-112
Identities = 77/171 (45%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
KI +P NFFL RGNHE N+N+IYGF DECK +YS +++ F+ F LP++ LI
Sbjct: 116 YCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINN 175
Query: 61 TILCMHGGL-SPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYV 119
L MHGGL S + KNI R Q P G +LLWADP E G G ++RG+ +
Sbjct: 176 DYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQE-ANGMGPSQRGLGHA 234
Query: 120 FGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
FGPD+ FLR + I R+H++ G QF + L+T+FSAPNYC
Sbjct: 235 FGPDITDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQG 285
Score = 68.1 bits (167), Expect = 2e-13
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSVAEDLTCCFSILPPIKKRT 253
+ G QF + L+T+FSAPNYC N G + V + +
Sbjct: 258 LRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQAGRNDDQNLI 311
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 316 bits (813), Expect = e-109
Identities = 74/171 (43%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
+K+ YP +F LLRGNHE N+N+IYGF E K +Y+ ++++ FS+VF LP++ I
Sbjct: 112 FGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCING 171
Query: 61 TILCMHGGL-SPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYV 119
+L MHGGL S + ++ I+ I R Q P+SG +CDLLW+DP G ++RGVS
Sbjct: 172 KVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQP-QNGRSISKRGVSCQ 230
Query: 120 FGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
FGPDV ++FL ++ I+R+H+V +GY+ +T+FSAPNYC +
Sbjct: 231 FGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMG 281
Score = 68.8 bits (169), Expect = 9e-14
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSV-AEDLTCCFSILPP 248
V +GY+ +T+FSAPNYC + N + + + DL F
Sbjct: 254 VKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTA 303
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 315 bits (809), Expect = e-106
Identities = 74/171 (43%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
+K+ YP +F LLRGNHE N+N+IYGF E K +Y+ ++++ FS+VF LP++ I
Sbjct: 265 FGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCING 324
Query: 61 TILCMHGGL-SPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYV 119
+L MHGGL S + ++ I+ I R Q P+SG +CDLLW+DP G ++RGVS
Sbjct: 325 KVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQP-QNGRSISKRGVSCQ 383
Query: 120 FGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
FGPDV ++FL ++ I+R+H+V +GY+ +T+FSAPNYC +
Sbjct: 384 FGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMG 434
Score = 68.9 bits (169), Expect = 1e-13
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSV-AEDLTCCFSILPP 248
V +GY+ +T+FSAPNYC + N + + + DL F
Sbjct: 407 VKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTA 456
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 311 bits (798), Expect = e-106
Identities = 68/183 (37%), Positives = 106/183 (57%), Gaps = 13/183 (7%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
A KI YP+ FLLRGNHEC ++ + F ECK +YS +++ D F+CLP++AL+ +
Sbjct: 121 WALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQ 180
Query: 61 TILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNE------- 113
LC+HGGLSP++ ++ I+ + R + P G +CD+LW+DP E + E
Sbjct: 181 QFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTV 240
Query: 114 RGVSYVFGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARR------GLLTLFSAPNYCG 167
RG SY + V FL+ ++ I+RAH+ + GY+ + L+T+FSAPNY
Sbjct: 241 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 300
Query: 168 EFD 170
++
Sbjct: 301 VYN 303
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 313 bits (803), Expect = e-105
Identities = 68/183 (37%), Positives = 106/183 (57%), Gaps = 13/183 (7%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
A KI YP+ FLLRGNHEC ++ + F ECK +YS +++ D F+CLP++AL+ +
Sbjct: 134 WALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQ 193
Query: 61 TILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNE------- 113
LC+HGGLSP++ ++ I+ + R + P G +CD+LW+DP E + E
Sbjct: 194 QFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTV 253
Query: 114 RGVSYVFGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARR------GLLTLFSAPNYCG 167
RG SY + V FL+ ++ I+RAH+ + GY+ + L+T+FSAPNY
Sbjct: 254 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 313
Query: 168 EFD 170
++
Sbjct: 314 VYN 316
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 59.8 bits (144), Expect = 1e-10
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 6 KYPQNFFLLRGNHECANI-------NRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALI 58
LL GNHE + ++ Y R KL+ +++ L I
Sbjct: 138 DAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTI 197
Query: 59 ERT--ILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNE--- 113
+ +L MHGG+S + I E + + + L AD +G+
Sbjct: 198 IKINDVLYMHGGISSEWISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGPTWY 257
Query: 114 RG-VSYVFGPDVVRSFLRRHDFSLIVRAHQVVEQGYQF 150
RG S F + + L+ + + IV H E+
Sbjct: 258 RGYFSETFTEAELDTILQHFNVNHIVVGHTSQERVLGL 295
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.009
Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 48/171 (28%)
Query: 8 PQNFFL------LRG-NHECANINRIYGFYDECKRRYSI-KLWKTFSDVFNCLPISALIE 59
+N + L G N G D+ + +S KL FS+ F LP+++
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGL-DQSRIPFSERKL--KFSNRF--LPVASP-- 426
Query: 60 RTILCMHGGLSPQLID-IEQIKNISRPIQVPESGLLCDLLWADPDEGV----TGWGSNER 114
H S L+ + I + ++ ++ + D + T GS+ R
Sbjct: 427 -----FH---SHLLVPASDLINK-----DLVKN----NVSFNAKDIQIPVYDTFDGSDLR 469
Query: 115 GVSYVFGPDVVRSFLRRH---DFSLIVRAHQVVEQGYQFG----ARRGLLT 158
+S +V +R + + +A +++ FG + G+LT
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILD----FGPGGASGLGVLT 516
>2poz_A Putative dehydratase; octamer, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Length = 392
Score = 30.3 bits (69), Expect = 0.53
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRRH 132
DEG+TG G E G++Y G ++
Sbjct: 28 DEGITGAG--EAGIAYGVGGTAAAGMIKDL 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.8
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 34 KRRYSIKLWKTFSDVFNCLPISALIE 59
K + S+KL+ D L I A +E
Sbjct: 24 KLQASLKLYA--DDSAPALAIKATME 47
>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW
YORK structura genomics research consortium, TIM barrel;
HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A
3t9p_A 3t8q_A
Length = 388
Score = 28.0 bits (63), Expect = 3.0
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRRH 132
+G GWG + D+ + L R
Sbjct: 44 QDGAQGWGQ-----VSTYHADITCTVLHRQ 68
>3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, isomerase, PSI-2; 2.30A
{Rubrobacter xylanophilus dsm 9941}
Length = 372
Score = 28.0 bits (63), Expect = 3.5
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 15/64 (23%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRRH--------DFSLIVRAHQVVEQGYQFGARR 154
G G G Y +G V F+ D ++ + R
Sbjct: 43 GGGRKGLG-------YTYGDVSVGRFVESKLAGVAEGSDALSPPAVWARMQAAIRNAGRP 95
Query: 155 GLLT 158
G+
Sbjct: 96 GVGA 99
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, protein structure initiative; HET:
RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Length = 433
Score = 27.7 bits (62), Expect = 3.7
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRRH 132
D+G+TGWG + GP+ +R+ +
Sbjct: 32 DDGITGWGE---CYAASVGPEAMRAVIEDV 58
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA
synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP:
c.51.1.1 d.68.5.1 d.104.1.1
Length = 459
Score = 27.7 bits (62), Expect = 3.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 168 EFDSPTGEKQTKYQTSWG 185
F++PTG+K YQT +G
Sbjct: 238 IFETPTGDKDYAYQTCYG 255
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET:
RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2
d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A*
2mnr_A 1mns_A
Length = 359
Score = 27.6 bits (62), Expect = 3.9
Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 10/63 (15%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRS-------FLRRHDFSLIVRAHQVVEQGYQFGARRG 155
GV G ++ + + V ++ + + G
Sbjct: 42 SAGVVGHS--YLFAYTPVALKSLKQLLDDMAAMIVNEPLA-PVSLEAMLAKRFCLAGYTG 98
Query: 156 LLT 158
L+
Sbjct: 99 LIR 101
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 27.7 bits (62), Expect = 4.0
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 106 VTGWGSNER---GVSYVFGPDVVRSFLRRHDF 134
+ W + + GV G + +R+FL +
Sbjct: 165 LRCWSRSRKSWPGVESYVGREELRAFLNQTRV 196
>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese,
biodegradation, aromatic, oxidoreductase; 1.50A
{Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB:
1f1r_A 1f1v_A* 1f1x_A
Length = 323
Score = 27.6 bits (61), Expect = 4.6
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 96 DLLWADPDEGVTGWGSNERGVSYVFGPDVVRSFLRR 131
D DPD W ++ +G VV S+
Sbjct: 272 DYYTGDPDNPTITWDVHDNQRRDWWGNPVVPSWYTE 307
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, prors, cysrs, RS, translation, ATP-binding,
nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia
atcc 50803}
Length = 518
Score = 27.4 bits (61), Expect = 5.0
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 169 FDSPTGEKQTKYQTSWG 185
+ + E Y T G
Sbjct: 256 YANKANESVHPYLTCAG 272
>3hwo_A Isochorismate synthase ENTC; chorismate-utilizing enzymes,
siderophore, enterobactin, enterobactin biosynthesis,
ION T iron, iron transport; HET: ISC; 2.30A {Escherichia
coli}
Length = 394
Score = 27.3 bits (61), Expect = 5.4
Identities = 8/52 (15%), Positives = 13/52 (25%)
Query: 96 DLLWADPDEGVTGWGSNERGVSYVFGPDVVRSFLRRHDFSLIVRAHQVVEQG 147
+ P T G R D S ++ +L A +
Sbjct: 23 RFFFMSPYRSFTTSGCFARFDEPAVNGDSPDSPFQQKLAALFADAKAQGIKN 74
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein;
enolase, dehydratase, enzyme function initiative, EFI,
lyase; 1.80A {Enterobacter SP}
Length = 422
Score = 27.2 bits (61), Expect = 5.9
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRRH 132
++G+TG G P V++ + +
Sbjct: 52 EQGITGHG--CATFQQ--RPLAVKTLVDEY 77
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural
genomics, lyase; 1.70A {Actinobacillus succinogenes}
PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A*
1jct_A* 3pwg_A* 1bqg_A
Length = 464
Score = 27.1 bits (60), Expect = 6.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRR 131
+ G TG G V G + +R L
Sbjct: 64 NSGNTGVG-------EVPGGEKIRQTLED 85
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 26.3 bits (59), Expect = 6.8
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 77 EQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYVFGPDV 124
+ +K + P Q PE G C +GWGS E G PD
Sbjct: 23 DAVKVLELPTQEPELGSTC---E------ASGWGSIEPGPDDFEFPDE 61
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 27.0 bits (60), Expect = 6.9
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 168 EFDSPTGEKQTKYQTSWG 185
+F++P G+ + +QT +G
Sbjct: 270 KFETPEGDHEYVHQTCYG 287
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
aldolase, structural genomics, biology; 1.35A
{Unidentified}
Length = 412
Score = 26.9 bits (60), Expect = 7.3
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRRH 132
D+G+ G G S FGP + +
Sbjct: 31 DDGIEGVGE---IYSATFGPKAMAPIIDDV 57
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline
+ tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A
{Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
PDB: 1h4q_A* 1h4t_A 1h4s_A
Length = 477
Score = 26.9 bits (60), Expect = 7.5
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 168 EFDSPTGEKQTKYQTSWG 185
+F + + + TSWG
Sbjct: 243 KFQDRDLQVKYVHTTSWG 260
>3p0w_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, protein structure initiative; HET: GKR;
1.71A {Ralstonia pickettii} PDB: 3nxl_A
Length = 470
Score = 26.8 bits (59), Expect = 7.5
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRR 131
+ G TG G V G + +R L R
Sbjct: 46 NAGRTGVG-------EVPGGEGIRQALER 67
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 26.8 bits (59), Expect = 7.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 84 RPIQVPESGLLCDLLWADPDEGVTGWGSNERG 115
+PI +P + L + VTGWG+ E G
Sbjct: 240 KPICLPITDELKEKAEQISTYFVTGWGTTENG 271
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain
protein; aldolase, structural genomics, biology; 2.90A
{Labrenzia alexandrii}
Length = 404
Score = 26.9 bits (60), Expect = 8.4
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRRH 132
G+TG+G E + FGPD+V
Sbjct: 32 ACGITGYG--EIYNAT-FGPDLVAKMAEDV 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.448
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,032,447
Number of extensions: 236673
Number of successful extensions: 567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 43
Length of query: 255
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,160,982
Effective search space: 682401048
Effective search space used: 682401048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.5 bits)