RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13083
(255 letters)
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 219 bits (560), Expect = 7e-72
Identities = 122/170 (71%), Positives = 143/170 (84%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
+AYKIKYP+NFFLLRGNHECA+INRIYGFYDECKRRY+IKLWKTF+D FNCLPI+A+++
Sbjct: 103 LAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDE 162
Query: 61 TILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYVF 120
I C HGGLSP L +EQI+ I RP VP+ GLLCDLLW+DPD+ V GWG N+RGVS+ F
Sbjct: 163 KIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTF 222
Query: 121 GPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
G +VV FL +HD LI RAHQVVE GY+F A+R L+TLFSAPNYCGEFD
Sbjct: 223 GAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFD 272
Score = 68.1 bits (166), Expect = 4e-14
Identities = 35/49 (71%), Positives = 39/49 (79%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSVAEDLTCCFSILPP 248
VVE GY+F A+R L+TLFSAPNYCGEFDNAGA +SV E L C F IL P
Sbjct: 245 VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 293
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 212 bits (540), Expect = 1e-66
Identities = 68/183 (37%), Positives = 106/183 (57%), Gaps = 13/183 (7%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
A KI YP+ FLLRGNHEC ++ + F ECK +YS +++ D F+CLP++AL+ +
Sbjct: 121 WALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQ 180
Query: 61 TILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNE------- 113
LC+HGGLSP++ ++ I+ + R + P G +CD+LW+DP E + E
Sbjct: 181 QFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTV 240
Query: 114 RGVSYVFGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARR------GLLTLFSAPNYCG 167
RG SY + V FL+ ++ I+RAH+ + GY+ + L+T+FSAPNY
Sbjct: 241 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 300
Query: 168 EFD 170
++
Sbjct: 301 VYN 303
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 200 bits (511), Expect = 4e-64
Identities = 73/171 (42%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLWKTFSDVFNCLPISALIER 60
+K+ YP +F LLRGNHE N+N+IYGF E K +Y+ ++++ FS+VF LP++ I
Sbjct: 112 FGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCING 171
Query: 61 TILCMHGGLSPQ-LIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYV 119
+L MHGGL + + ++ I+ I R Q P+SG +CDLLW+DP G ++RGVS
Sbjct: 172 KVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQP-QNGRSISKRGVSCQ 230
Query: 120 FGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
FGPDV ++FL ++ I+R+H+V +GY+ +T+FSAPNYC +
Sbjct: 231 FGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMG 281
Score = 61.1 bits (148), Expect = 1e-11
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSV-AEDLTCCFSILPPI 249
V +GY+ +T+FSAPNYC + N + + + DL F +
Sbjct: 254 VKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAV 304
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 197 bits (503), Expect = 2e-63
Identities = 76/171 (44%), Positives = 115/171 (67%), Gaps = 2/171 (1%)
Query: 1 MAYKIKYPQNFFLLRGNHECANINRIYGFYDECKRRY-SIKLWKTFSDVFNCLPISALIE 59
+A K++Y + +LRGNHE I ++YGFYDEC R+Y + +WK F+D+F+ LP++AL++
Sbjct: 96 VALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 155
Query: 60 RTILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYV 119
I C+HGGLSP + ++ I+ + R +VP G +CDLLW+DPD+ GWG + RG Y
Sbjct: 156 GQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDD-RGGWGISPRGAGYT 214
Query: 120 FGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRGLLTLFSAPNYCGEFD 170
FG D+ +F + +L+ RAHQ+V +GY + R ++T+FSAPNYC
Sbjct: 215 FGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCG 265
Score = 67.7 bits (165), Expect = 6e-14
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 200 VVEQGYQFGARRGLLTLFSAPNYCGEFDNAGAALSVAEDLTCCFSILPP 248
+V +GY + R ++T+FSAPNYC N A + + + L F P
Sbjct: 238 LVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDP 286
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 29.8 bits (66), Expect = 0.22
Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 24/146 (16%)
Query: 3 YKIKYPQNFFLLRGNHECANINRIYGFYDECKRRYSIKLW------------KTFSDVFN 50
++ F +RGNHE I+ + + + W K + +
Sbjct: 61 LELITFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKAD 120
Query: 51 CLPIS---ALIERTILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVT 107
LP+ ++ + H + + + + I E +G
Sbjct: 121 ELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGAD 180
Query: 108 GWGSNERGVSYVFGPDVVRSFLRRHD 133
+++FG L+ +
Sbjct: 181 ---------TFIFGHTPAVKPLKFAN 197
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein
transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.7 bits (64), Expect = 0.53
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 62 ILCMHGGLSPQLIDIEQIKNISRPIQVPESGLLCDLLWADPDEGVTGWGSNERGVSYVFG 121
+L + G LSP + + + G+ W P + + W + R V +
Sbjct: 26 LLALGGDLSPARL-----------LMAYQRGIF---PWFSPGDPILWWSPDPRAVLWPES 71
Query: 122 PDVVRS---FLRRHDFS 135
+ RS F +R +
Sbjct: 72 LHISRSMKRFHKRSPYR 88
>d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273
{Salmonella typhimurium [TaxId: 90371]}
Length = 122
Score = 26.0 bits (56), Expect = 3.2
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 103 DEGVTGWGSNERGVSYVFGPDVVRSFLRRHDFSLIVRAHQVVEQGYQFGARRG 155
D G++G G E G++Y G +R ++ +E+ ++F R+
Sbjct: 33 DSGLSGIG--EVGLAYGAGAKAGVGIIRDLAPLIVGEDPLNIEKIWEFFFRKT 83
>d2q07a3 d.17.6.5 (A:394-459) Uncharacterized protein AF0587
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 66
Score = 24.6 bits (53), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 6 KYPQNFFLLRGNHECANINRIYGFYD 31
+YP+ LL G A ++RIYG D
Sbjct: 28 RYPE-LELLEGKKRLARVDRIYGMLD 52
>d1f1ua2 d.32.1.3 (A:148-323) Homoprotocatechuate 2,3-dioxygenase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 176
Score = 25.2 bits (54), Expect = 6.7
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 95 CDLLWADPDEGVTGWGSNERGVSYVFGPDVVRSFLRR 131
D DPD W ++ +G VV S+
Sbjct: 124 QDYYTGDPDNPTITWDVHDNQRRDWWGNPVVPSWYTE 160
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 194
Score = 24.7 bits (53), Expect = 10.0
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 50 NCLPISALIERTILCMHGGLSPQLIDIEQIKNISRPIQV 88
NC + L + L P+ +N P +
Sbjct: 8 NCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSML 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.448
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,002,134
Number of extensions: 46540
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 16
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)