Query psy13086
Match_columns 169
No_of_seqs 213 out of 1972
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:02:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02390 Methyltransf_4: Putat 100.0 2E-36 4.4E-41 236.6 13.8 158 1-166 8-195 (195)
2 COG0220 Predicted S-adenosylme 100.0 3.6E-33 7.8E-38 222.5 15.4 159 2-167 39-226 (227)
3 TIGR00091 tRNA (guanine-N(7)-) 100.0 6.9E-33 1.5E-37 216.0 16.3 158 2-167 8-194 (194)
4 PRK14121 tRNA (guanine-N(7)-)- 100.0 3.8E-29 8.2E-34 212.2 15.0 140 18-167 123-290 (390)
5 KOG3115|consensus 99.9 2.9E-27 6.2E-32 183.3 8.7 166 1-168 45-246 (249)
6 PRK01544 bifunctional N5-gluta 99.9 7.4E-27 1.6E-31 205.3 12.1 140 1-151 338-505 (506)
7 PRK00121 trmB tRNA (guanine-N( 99.9 1.2E-22 2.6E-27 159.3 13.3 142 2-154 32-202 (202)
8 COG2226 UbiE Methylase involve 99.7 1.3E-16 2.9E-21 128.0 7.6 142 17-158 51-219 (238)
9 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.4E-15 9.6E-20 118.4 7.9 100 18-132 60-189 (243)
10 PF12847 Methyltransf_18: Meth 99.6 5.7E-15 1.2E-19 104.1 7.1 87 18-104 2-111 (112)
11 PLN02396 hexaprenyldihydroxybe 99.6 1.9E-14 4.1E-19 120.4 11.2 136 18-160 132-286 (322)
12 PF01209 Ubie_methyltran: ubiE 99.6 7.1E-15 1.5E-19 117.9 7.6 88 17-104 47-153 (233)
13 PF08241 Methyltransf_11: Meth 99.5 4.7E-15 1E-19 100.6 4.1 78 22-102 1-95 (95)
14 PLN02233 ubiquinone biosynthes 99.5 5.5E-14 1.2E-18 114.3 9.1 85 18-104 74-182 (261)
15 PRK14103 trans-aconitate 2-met 99.5 2.4E-13 5.2E-18 109.8 12.2 129 18-158 30-179 (255)
16 KOG1540|consensus 99.5 5.8E-14 1.3E-18 112.8 8.4 153 3-160 88-278 (296)
17 PRK11088 rrmA 23S rRNA methylt 99.5 7.4E-14 1.6E-18 113.9 7.2 97 18-117 86-194 (272)
18 PRK01683 trans-aconitate 2-met 99.5 2E-13 4.3E-18 110.1 8.9 80 17-104 31-130 (258)
19 KOG1270|consensus 99.5 9.8E-14 2.1E-18 111.8 5.8 95 19-116 91-207 (282)
20 PTZ00098 phosphoethanolamine N 99.4 2.6E-13 5.6E-18 110.5 8.1 88 16-104 51-156 (263)
21 PLN02244 tocopherol O-methyltr 99.4 2.9E-13 6.3E-18 113.9 7.9 85 17-104 118-223 (340)
22 PF08242 Methyltransf_12: Meth 99.4 1.6E-14 3.4E-19 100.2 -0.0 71 22-100 1-99 (99)
23 PRK15451 tRNA cmo(5)U34 methyl 99.4 3.4E-13 7.4E-18 108.7 7.6 87 18-104 57-164 (247)
24 PF13847 Methyltransf_31: Meth 99.4 4.8E-13 1E-17 99.9 7.6 87 17-106 3-112 (152)
25 TIGR00740 methyltransferase, p 99.4 5.6E-13 1.2E-17 106.6 8.4 87 18-104 54-161 (239)
26 PRK08287 cobalt-precorrin-6Y C 99.4 2.3E-12 5E-17 99.4 11.2 105 17-121 31-148 (187)
27 PRK00107 gidB 16S rRNA methylt 99.4 1.1E-12 2.4E-17 102.0 8.7 87 18-104 46-145 (187)
28 TIGR02752 MenG_heptapren 2-hep 99.4 1.3E-12 2.8E-17 103.5 9.3 86 18-105 46-152 (231)
29 PRK10258 biotin biosynthesis p 99.4 1.2E-12 2.6E-17 105.2 8.6 88 18-107 43-143 (251)
30 TIGR02469 CbiT precorrin-6Y C5 99.4 2.2E-12 4.7E-17 91.9 8.7 87 18-104 20-122 (124)
31 PRK07402 precorrin-6B methylas 99.4 8.5E-12 1.8E-16 97.0 11.5 103 17-119 40-157 (196)
32 PRK11036 putative S-adenosyl-L 99.4 5.7E-12 1.2E-16 101.8 10.4 86 18-107 45-152 (255)
33 PRK15001 SAM-dependent 23S rib 99.3 4.1E-12 8.9E-17 108.4 9.5 97 18-117 229-354 (378)
34 PRK00517 prmA ribosomal protei 99.3 8E-12 1.7E-16 100.9 10.4 108 17-125 119-233 (250)
35 PF05175 MTS: Methyltransferas 99.3 2E-12 4.4E-17 98.6 6.5 85 17-104 31-140 (170)
36 PRK05785 hypothetical protein; 99.3 5.5E-12 1.2E-16 100.6 9.0 78 18-98 52-141 (226)
37 COG4106 Tam Trans-aconitate me 99.3 3.6E-12 7.9E-17 100.4 7.6 101 16-121 29-149 (257)
38 TIGR00477 tehB tellurite resis 99.3 6.8E-12 1.5E-16 97.8 8.9 83 18-103 31-132 (195)
39 TIGR00138 gidB 16S rRNA methyl 99.3 1.1E-11 2.3E-16 95.9 9.3 88 18-105 43-143 (181)
40 COG2230 Cfa Cyclopropane fatty 99.3 6E-12 1.3E-16 103.1 8.3 89 15-104 70-176 (283)
41 PRK11207 tellurite resistance 99.3 9.5E-12 2.1E-16 97.1 8.9 83 18-103 31-133 (197)
42 TIGR02072 BioC biotin biosynth 99.3 1.3E-11 2.8E-16 97.2 9.2 87 18-106 35-137 (240)
43 PLN02336 phosphoethanolamine N 99.3 6.3E-12 1.4E-16 109.7 8.0 87 17-104 266-369 (475)
44 PRK04266 fibrillarin; Provisio 99.3 1.1E-11 2.5E-16 99.0 8.6 87 17-103 72-175 (226)
45 PRK06922 hypothetical protein; 99.3 5.2E-12 1.1E-16 113.3 7.3 87 18-104 419-537 (677)
46 COG4123 Predicted O-methyltran 99.3 3.1E-11 6.7E-16 97.4 10.6 100 17-119 44-184 (248)
47 PRK09489 rsmC 16S ribosomal RN 99.3 2.1E-11 4.5E-16 102.9 10.0 96 18-117 197-317 (342)
48 smart00828 PKS_MT Methyltransf 99.3 7.6E-12 1.6E-16 98.7 6.9 82 20-104 2-104 (224)
49 PF13649 Methyltransf_25: Meth 99.3 3.6E-12 7.8E-17 88.9 4.2 73 21-98 1-101 (101)
50 TIGR00537 hemK_rel_arch HemK-r 99.3 3E-11 6.6E-16 92.6 9.6 102 18-121 20-157 (179)
51 PF02353 CMAS: Mycolic acid cy 99.3 1.2E-11 2.5E-16 101.5 7.1 89 15-104 60-166 (273)
52 TIGR00406 prmA ribosomal prote 99.3 3.7E-11 8E-16 99.0 10.0 107 18-126 160-279 (288)
53 PRK11873 arsM arsenite S-adeno 99.3 3.1E-11 6.6E-16 98.2 9.2 89 16-104 76-183 (272)
54 PRK00377 cbiT cobalt-precorrin 99.3 7.9E-11 1.7E-15 91.8 11.0 105 17-121 40-162 (198)
55 PLN02490 MPBQ/MSBQ methyltrans 99.2 2.5E-11 5.5E-16 102.2 8.7 85 18-104 114-215 (340)
56 TIGR00452 methyltransferase, p 99.2 2.7E-11 5.9E-16 101.1 8.6 84 17-104 121-225 (314)
57 TIGR03534 RF_mod_PrmC protein- 99.2 6.8E-11 1.5E-15 94.4 10.4 106 18-125 88-236 (251)
58 KOG4300|consensus 99.2 5.8E-11 1.3E-15 93.1 9.1 81 19-107 78-185 (252)
59 PRK08317 hypothetical protein; 99.2 3.8E-11 8.3E-16 94.3 8.2 88 17-104 19-124 (241)
60 TIGR03533 L3_gln_methyl protei 99.2 1.2E-10 2.7E-15 95.8 11.2 104 18-126 122-270 (284)
61 PF13489 Methyltransf_23: Meth 99.2 2.7E-11 5.8E-16 89.8 6.4 120 17-159 22-159 (161)
62 PRK11705 cyclopropane fatty ac 99.2 5.8E-11 1.3E-15 101.6 8.5 87 17-104 167-267 (383)
63 PRK12335 tellurite resistance 99.2 5.7E-11 1.2E-15 97.7 8.2 84 18-103 121-222 (287)
64 PRK13944 protein-L-isoaspartat 99.2 6.6E-11 1.4E-15 92.9 8.2 86 17-104 72-173 (205)
65 COG2813 RsmC 16S RNA G1207 met 99.2 9.2E-11 2E-15 96.6 8.8 101 18-118 159-281 (300)
66 PF13659 Methyltransf_26: Meth 99.2 6.9E-11 1.5E-15 83.8 7.0 83 19-104 2-115 (117)
67 TIGR03587 Pse_Me-ase pseudamin 99.2 5.8E-11 1.3E-15 93.4 7.1 84 17-103 43-141 (204)
68 PRK11188 rrmJ 23S rRNA methylt 99.2 1.5E-10 3.2E-15 91.4 9.5 90 17-106 51-167 (209)
69 PRK15068 tRNA mo(5)U34 methylt 99.2 1.1E-10 2.4E-15 97.7 8.4 83 18-104 123-226 (322)
70 TIGR03438 probable methyltrans 99.2 1.2E-10 2.6E-15 96.6 8.4 88 18-105 64-178 (301)
71 TIGR00080 pimt protein-L-isoas 99.2 1.1E-10 2.5E-15 92.0 7.6 86 17-104 77-177 (215)
72 PF07021 MetW: Methionine bios 99.1 9.3E-10 2E-14 85.5 12.1 143 17-164 13-168 (193)
73 smart00138 MeTrc Methyltransfe 99.1 5.4E-11 1.2E-15 97.0 4.9 86 18-103 100-241 (264)
74 KOG1541|consensus 99.1 2.4E-10 5.3E-15 90.4 8.3 84 17-104 50-160 (270)
75 KOG2361|consensus 99.1 1.1E-10 2.3E-15 93.4 6.1 77 20-104 74-183 (264)
76 PRK09328 N5-glutamine S-adenos 99.1 6.4E-10 1.4E-14 90.2 10.6 103 18-124 109-256 (275)
77 PRK04457 spermidine synthase; 99.1 3.5E-10 7.6E-15 92.2 8.9 82 18-103 67-176 (262)
78 TIGR02716 C20_methyl_CrtF C-20 99.1 2.9E-10 6.3E-15 94.1 8.4 87 17-104 149-254 (306)
79 PLN03075 nicotianamine synthas 99.1 4.6E-10 1E-14 92.8 9.3 81 17-104 123-233 (296)
80 PRK13942 protein-L-isoaspartat 99.1 3.1E-10 6.8E-15 89.6 7.7 86 17-104 76-176 (212)
81 PRK14967 putative methyltransf 99.1 7.1E-10 1.5E-14 87.9 9.8 85 18-105 37-160 (223)
82 TIGR01983 UbiG ubiquinone bios 99.1 1.6E-09 3.4E-14 85.2 11.3 133 18-159 46-199 (224)
83 PRK00811 spermidine synthase; 99.1 8.9E-10 1.9E-14 90.7 10.3 84 18-105 77-192 (283)
84 PRK00216 ubiE ubiquinone/menaq 99.1 6E-10 1.3E-14 87.8 8.8 85 18-104 52-158 (239)
85 PRK14968 putative methyltransf 99.1 1.1E-09 2.4E-14 83.5 9.9 101 18-120 24-164 (188)
86 TIGR03704 PrmC_rel_meth putati 99.1 1.3E-09 2.8E-14 88.3 10.6 101 18-121 87-232 (251)
87 PRK06202 hypothetical protein; 99.1 5.5E-10 1.2E-14 88.9 8.1 85 18-104 61-166 (232)
88 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 8.7E-10 1.9E-14 86.0 9.0 85 18-104 40-143 (223)
89 PRK11805 N5-glutamine S-adenos 99.1 1.3E-09 2.8E-14 90.8 10.4 103 19-126 135-282 (307)
90 KOG3010|consensus 99.1 1.7E-10 3.7E-15 92.2 4.5 74 18-102 34-135 (261)
91 PRK10901 16S rRNA methyltransf 99.0 2.2E-09 4.7E-14 93.0 11.3 110 17-126 244-397 (427)
92 TIGR00536 hemK_fam HemK family 99.0 2.1E-09 4.5E-14 88.4 10.5 86 19-106 116-246 (284)
93 COG2264 PrmA Ribosomal protein 99.0 1.3E-09 2.9E-14 90.1 9.2 110 15-125 160-283 (300)
94 TIGR00438 rrmJ cell division p 99.0 1.9E-09 4.2E-14 83.2 9.5 91 16-106 31-148 (188)
95 PRK14966 unknown domain/N5-glu 99.0 2.4E-09 5.3E-14 92.2 10.8 101 18-121 252-397 (423)
96 TIGR00563 rsmB ribosomal RNA s 99.0 2.5E-09 5.4E-14 92.6 11.0 109 17-125 238-392 (426)
97 PRK14903 16S rRNA methyltransf 99.0 2.8E-09 6.1E-14 92.5 11.1 110 17-126 237-391 (431)
98 PRK01581 speE spermidine synth 99.0 2.3E-09 5E-14 90.9 10.2 88 18-108 151-272 (374)
99 PRK05134 bifunctional 3-demeth 99.0 3.7E-09 8E-14 83.9 10.8 85 18-106 49-153 (233)
100 COG2519 GCD14 tRNA(1-methylade 99.0 3.8E-09 8.3E-14 85.1 10.6 93 15-120 92-211 (256)
101 PF06325 PrmA: Ribosomal prote 99.0 5.7E-10 1.2E-14 92.4 5.8 108 17-126 161-279 (295)
102 TIGR02021 BchM-ChlM magnesium 99.0 5.2E-09 1.1E-13 82.5 10.7 132 17-161 55-204 (219)
103 COG2242 CobL Precorrin-6B meth 99.0 8.3E-09 1.8E-13 79.8 11.4 108 16-123 33-154 (187)
104 PLN02336 phosphoethanolamine N 99.0 1.2E-09 2.7E-14 95.3 7.4 84 18-103 38-141 (475)
105 PHA03411 putative methyltransf 99.0 2.3E-09 5E-14 87.8 8.4 90 18-107 65-186 (279)
106 TIGR01177 conserved hypothetic 99.0 2.1E-09 4.5E-14 90.1 8.4 87 17-106 182-296 (329)
107 PRK14902 16S rRNA methyltransf 99.0 5.4E-09 1.2E-13 91.0 11.2 111 17-127 250-405 (444)
108 COG2890 HemK Methylase of poly 99.0 5.9E-09 1.3E-13 85.8 10.7 103 20-125 113-258 (280)
109 PF03291 Pox_MCEL: mRNA cappin 99.0 1.4E-09 3E-14 91.5 6.9 93 18-110 63-192 (331)
110 TIGR00417 speE spermidine synt 99.0 5E-09 1.1E-13 85.6 10.0 85 18-106 73-188 (270)
111 KOG1271|consensus 98.9 2.4E-09 5.1E-14 82.7 6.8 122 19-166 69-227 (227)
112 PRK01544 bifunctional N5-gluta 98.9 6.6E-09 1.4E-13 91.9 10.6 40 18-57 139-183 (506)
113 PRK00312 pcm protein-L-isoaspa 98.9 3.7E-09 8.1E-14 83.0 8.1 85 17-105 78-176 (212)
114 PRK03612 spermidine synthase; 98.9 7.3E-09 1.6E-13 91.9 10.2 84 18-105 298-416 (521)
115 TIGR03840 TMPT_Se_Te thiopurin 98.9 4.6E-09 9.9E-14 83.2 8.1 36 17-54 34-74 (213)
116 TIGR00446 nop2p NOL1/NOP2/sun 98.9 1.5E-08 3.3E-13 82.5 11.0 110 17-126 71-224 (264)
117 PRK14904 16S rRNA methyltransf 98.9 1.5E-08 3.3E-13 88.2 11.6 110 17-126 250-402 (445)
118 TIGR02081 metW methionine bios 98.9 6E-08 1.3E-12 75.2 13.7 140 18-164 14-168 (194)
119 PLN02366 spermidine synthase 98.9 1.1E-08 2.4E-13 85.2 9.8 84 18-105 92-207 (308)
120 PRK14901 16S rRNA methyltransf 98.9 2.1E-08 4.5E-13 87.1 11.6 110 17-126 252-409 (434)
121 PF03848 TehB: Tellurite resis 98.9 6.3E-09 1.4E-13 81.2 7.3 85 17-104 30-133 (192)
122 PF08003 Methyltransf_9: Prote 98.9 7.7E-09 1.7E-13 85.5 7.7 90 3-104 104-219 (315)
123 cd02440 AdoMet_MTases S-adenos 98.9 1.8E-08 3.9E-13 67.5 8.3 76 20-103 1-103 (107)
124 PRK13943 protein-L-isoaspartat 98.9 1.1E-08 2.4E-13 85.8 8.7 86 17-104 80-180 (322)
125 PF05401 NodS: Nodulation prot 98.8 7E-09 1.5E-13 81.0 6.1 87 18-106 44-148 (201)
126 PTZ00146 fibrillarin; Provisio 98.8 1.8E-08 3.9E-13 83.2 8.9 78 16-103 131-236 (293)
127 COG4976 Predicted methyltransf 98.8 1.7E-09 3.6E-14 86.2 2.3 87 18-104 126-225 (287)
128 PRK13255 thiopurine S-methyltr 98.8 1.5E-08 3.3E-13 80.5 7.8 36 17-54 37-77 (218)
129 PLN02585 magnesium protoporphy 98.8 1.1E-07 2.3E-12 79.7 13.0 38 18-57 145-187 (315)
130 PLN02781 Probable caffeoyl-CoA 98.8 1.9E-08 4.2E-13 80.7 7.9 84 17-102 68-176 (234)
131 PRK15128 23S rRNA m(5)C1962 me 98.8 1.2E-07 2.5E-12 81.7 11.9 87 17-105 220-340 (396)
132 PRK07580 Mg-protoporphyrin IX 98.8 3.3E-08 7.2E-13 77.9 7.9 38 18-57 64-106 (230)
133 KOG2899|consensus 98.7 7.1E-08 1.5E-12 77.5 8.7 40 18-57 59-103 (288)
134 PF08704 GCD14: tRNA methyltra 98.7 9.6E-08 2.1E-12 77.4 8.8 95 17-125 40-166 (247)
135 PF01135 PCMT: Protein-L-isoas 98.7 2.2E-08 4.7E-13 79.2 4.8 87 16-104 71-172 (209)
136 COG2518 Pcm Protein-L-isoaspar 98.6 7.1E-08 1.5E-12 76.0 6.2 85 16-104 71-169 (209)
137 PRK11783 rlmL 23S rRNA m(2)G24 98.6 3.2E-07 6.9E-12 84.2 11.3 90 17-109 538-661 (702)
138 PHA03412 putative methyltransf 98.6 9.9E-08 2.1E-12 76.7 7.0 80 18-99 50-158 (241)
139 PRK13168 rumA 23S rRNA m(5)U19 98.6 3.7E-07 8E-12 79.5 9.8 96 18-116 298-412 (443)
140 COG4122 Predicted O-methyltran 98.6 3.4E-07 7.4E-12 72.8 8.5 85 17-103 59-165 (219)
141 KOG2904|consensus 98.6 3.7E-07 8E-12 74.6 8.6 41 17-57 148-193 (328)
142 KOG1975|consensus 98.5 3.3E-07 7.2E-12 76.3 8.1 100 18-117 118-250 (389)
143 PLN02672 methionine S-methyltr 98.5 1.3E-06 2.8E-11 83.1 12.2 39 18-56 119-162 (1082)
144 smart00650 rADc Ribosomal RNA 98.5 8.8E-07 1.9E-11 67.2 8.7 38 18-57 14-56 (169)
145 PLN02823 spermine synthase 98.5 2E-06 4.4E-11 72.6 11.5 85 18-104 104-220 (336)
146 PF01596 Methyltransf_3: O-met 98.5 4.4E-07 9.5E-12 71.6 7.0 75 18-103 46-154 (205)
147 TIGR02085 meth_trns_rumB 23S r 98.5 1.5E-06 3.3E-11 74.2 10.3 91 18-116 234-346 (374)
148 PRK03522 rumB 23S rRNA methylu 98.4 1.1E-06 2.4E-11 73.3 8.9 95 18-115 174-285 (315)
149 TIGR00479 rumA 23S rRNA (uraci 98.4 1.6E-06 3.4E-11 75.2 9.8 93 18-113 293-405 (431)
150 PLN02232 ubiquinone biosynthes 98.4 5.4E-07 1.2E-11 68.1 6.0 65 40-104 1-81 (160)
151 PF03141 Methyltransf_29: Puta 98.4 1E-07 2.2E-12 83.3 2.0 86 19-104 119-219 (506)
152 PLN02476 O-methyltransferase 98.4 1.2E-06 2.6E-11 72.1 8.1 84 17-102 118-226 (278)
153 PF05724 TPMT: Thiopurine S-me 98.4 6.5E-07 1.4E-11 71.2 5.7 35 18-54 38-77 (218)
154 PRK13256 thiopurine S-methyltr 98.3 2E-06 4.3E-11 68.9 7.7 86 17-104 43-163 (226)
155 PF00891 Methyltransf_2: O-met 98.3 1.7E-06 3.7E-11 69.1 6.2 84 18-104 101-199 (241)
156 PRK10909 rsmD 16S rRNA m(2)G96 98.3 6.2E-06 1.4E-10 64.8 8.8 39 18-57 54-97 (199)
157 KOG1331|consensus 98.3 8.4E-07 1.8E-11 72.7 3.9 86 18-103 46-142 (293)
158 PRK11727 23S rRNA mA1618 methy 98.3 1.1E-06 2.3E-11 73.8 4.6 40 18-57 115-159 (321)
159 PF05148 Methyltransf_8: Hypot 98.2 1.2E-06 2.7E-11 69.0 4.3 78 18-104 73-158 (219)
160 PF01564 Spermine_synth: Sperm 98.2 1.2E-05 2.6E-10 65.1 9.4 98 18-119 77-210 (246)
161 COG2263 Predicted RNA methylas 98.2 7E-06 1.5E-10 63.8 7.2 40 18-57 46-89 (198)
162 TIGR03439 methyl_EasF probable 98.2 7.7E-06 1.7E-10 68.6 7.9 88 18-105 77-198 (319)
163 PRK00274 ksgA 16S ribosomal RN 98.2 2E-06 4.4E-11 70.3 4.4 39 17-57 42-85 (272)
164 TIGR00478 tly hemolysin TlyA f 98.1 7.9E-06 1.7E-10 65.5 7.1 33 18-51 76-113 (228)
165 PF06080 DUF938: Protein of un 98.1 4.3E-06 9.2E-11 65.8 5.0 84 20-103 28-140 (204)
166 PF01739 CheR: CheR methyltran 98.1 4.5E-06 9.7E-11 65.5 4.9 37 18-54 32-82 (196)
167 COG0421 SpeE Spermidine syntha 98.1 3.9E-05 8.4E-10 63.4 10.3 85 19-107 78-193 (282)
168 PRK04148 hypothetical protein; 98.1 1E-05 2.2E-10 59.8 6.2 39 18-56 17-59 (134)
169 KOG3420|consensus 98.1 1.6E-06 3.4E-11 65.0 1.7 47 5-57 42-92 (185)
170 KOG3191|consensus 98.1 3E-05 6.6E-10 60.0 8.5 88 18-105 44-169 (209)
171 PLN02589 caffeoyl-CoA O-methyl 98.0 2E-05 4.4E-10 63.9 7.9 84 17-102 79-188 (247)
172 PRK04338 N(2),N(2)-dimethylgua 98.0 2.1E-05 4.7E-10 67.5 8.3 91 19-109 59-164 (382)
173 KOG3045|consensus 98.0 4.8E-06 1E-10 67.7 4.0 78 17-104 180-264 (325)
174 PF10294 Methyltransf_16: Puta 98.0 1.4E-05 3E-10 61.2 6.0 86 17-104 45-156 (173)
175 PF05219 DREV: DREV methyltran 98.0 2.5E-05 5.4E-10 63.5 7.4 77 17-104 94-188 (265)
176 PRK14896 ksgA 16S ribosomal RN 98.0 8.4E-06 1.8E-10 66.2 4.6 39 17-57 29-72 (258)
177 TIGR02143 trmA_only tRNA (urac 98.0 5.4E-05 1.2E-09 64.3 9.7 86 19-116 199-323 (353)
178 TIGR00095 RNA methyltransferas 98.0 4.2E-05 9E-10 59.5 8.2 39 18-57 50-93 (189)
179 PRK10611 chemotaxis methyltran 98.0 1.1E-05 2.4E-10 66.7 5.2 37 18-54 116-165 (287)
180 PRK00536 speE spermidine synth 98.0 6.3E-05 1.4E-09 61.5 9.4 89 18-108 73-175 (262)
181 COG1352 CheR Methylase of chem 97.9 2E-05 4.4E-10 64.5 6.1 36 18-53 97-146 (268)
182 PF02475 Met_10: Met-10+ like- 97.9 1.4E-05 2.9E-10 62.9 4.8 74 17-102 101-200 (200)
183 PF01170 UPF0020: Putative RNA 97.9 3.6E-05 7.9E-10 59.3 7.1 89 18-110 29-156 (179)
184 PRK11933 yebU rRNA (cytosine-C 97.9 0.00015 3.4E-09 63.8 11.6 106 17-122 113-263 (470)
185 KOG1661|consensus 97.9 2.1E-05 4.5E-10 62.2 5.3 88 15-104 80-193 (237)
186 COG1041 Predicted DNA modifica 97.9 2.3E-05 5E-10 66.1 5.9 88 18-105 198-311 (347)
187 TIGR00755 ksgA dimethyladenosi 97.9 1.8E-05 4E-10 63.9 4.7 39 17-57 29-72 (253)
188 COG0500 SmtA SAM-dependent met 97.9 8.2E-05 1.8E-09 51.5 7.3 85 21-106 52-157 (257)
189 PRK05031 tRNA (uracil-5-)-meth 97.9 0.00014 3.1E-09 61.9 10.1 37 19-57 208-249 (362)
190 TIGR00308 TRM1 tRNA(guanine-26 97.8 0.00013 2.7E-09 62.6 8.9 78 19-108 46-152 (374)
191 PF05185 PRMT5: PRMT5 arginine 97.8 3.9E-05 8.4E-10 67.2 5.5 82 18-101 187-294 (448)
192 PF02527 GidB: rRNA small subu 97.7 0.00013 2.9E-09 56.6 7.5 82 20-104 51-148 (184)
193 KOG1499|consensus 97.7 4E-05 8.7E-10 64.5 4.6 40 16-56 59-102 (346)
194 PTZ00338 dimethyladenosine tra 97.7 3E-05 6.6E-10 64.3 3.6 39 17-57 36-79 (294)
195 TIGR01444 fkbM_fam methyltrans 97.7 4.1E-05 8.8E-10 55.9 3.8 38 20-57 1-43 (143)
196 COG1092 Predicted SAM-dependen 97.7 0.00048 1E-08 59.4 10.6 87 18-106 218-338 (393)
197 KOG2940|consensus 97.6 7.5E-05 1.6E-09 60.1 4.0 85 18-104 73-174 (325)
198 COG0144 Sun tRNA and rRNA cyto 97.6 0.00077 1.7E-08 57.4 10.5 111 17-127 156-314 (355)
199 PF05891 Methyltransf_PK: AdoM 97.5 0.00028 6.1E-09 56.1 6.8 126 17-164 55-202 (218)
200 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00016 3.5E-09 60.1 5.6 39 18-56 20-64 (296)
201 KOG1269|consensus 97.5 9.4E-05 2E-09 63.1 3.9 87 17-103 110-214 (364)
202 COG3963 Phospholipid N-methylt 97.5 0.00089 1.9E-08 51.4 8.7 81 18-104 49-156 (194)
203 PF08123 DOT1: Histone methyla 97.5 0.00019 4.2E-09 56.6 5.1 38 17-54 42-84 (205)
204 COG2521 Predicted archaeal met 97.5 9.9E-05 2.1E-09 59.4 3.3 83 18-105 135-246 (287)
205 PF10672 Methyltrans_SAM: S-ad 97.4 0.00049 1.1E-08 57.0 6.9 88 17-106 123-240 (286)
206 PF13679 Methyltransf_32: Meth 97.4 0.00021 4.6E-09 52.7 4.1 40 18-57 26-74 (141)
207 PF01728 FtsJ: FtsJ-like methy 97.4 0.00018 3.8E-09 55.0 3.4 30 18-47 24-59 (181)
208 KOG1500|consensus 97.3 0.00044 9.6E-09 58.4 5.6 38 18-56 178-219 (517)
209 PF12147 Methyltransf_20: Puta 97.3 0.0013 2.9E-08 54.4 8.2 104 17-120 135-266 (311)
210 COG2265 TrmA SAM-dependent met 97.3 0.0036 7.8E-08 54.7 11.2 102 17-119 293-411 (432)
211 KOG1709|consensus 97.3 0.00061 1.3E-08 54.3 5.6 79 16-104 100-206 (271)
212 COG4262 Predicted spermidine s 97.3 0.002 4.3E-08 55.1 8.9 85 18-105 290-408 (508)
213 KOG2915|consensus 97.3 0.002 4.4E-08 52.9 8.5 91 16-119 104-225 (314)
214 KOG2187|consensus 97.2 0.0015 3.2E-08 57.7 7.6 96 16-111 382-497 (534)
215 KOG4589|consensus 97.2 0.009 1.9E-07 46.8 10.9 89 16-104 68-184 (232)
216 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.00079 1.7E-08 54.9 5.4 39 16-54 55-97 (256)
217 PF09243 Rsm22: Mitochondrial 97.1 0.0035 7.5E-08 51.5 9.1 37 18-54 34-76 (274)
218 KOG1663|consensus 97.1 0.0021 4.6E-08 51.5 7.4 74 18-102 74-181 (237)
219 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.004 8.8E-08 51.3 8.9 108 17-127 85-245 (283)
220 TIGR02987 met_A_Alw26 type II 97.1 0.00085 1.8E-08 59.7 5.1 40 18-57 32-84 (524)
221 PF03602 Cons_hypoth95: Conser 97.1 0.0012 2.6E-08 51.2 5.3 82 18-107 43-156 (183)
222 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0014 2.9E-08 54.3 5.0 89 18-106 47-185 (311)
223 PF07091 FmrO: Ribosomal RNA m 96.9 0.0012 2.6E-08 53.5 3.8 46 4-54 97-147 (251)
224 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.011 2.3E-07 54.7 10.0 20 38-57 258-277 (702)
225 KOG3178|consensus 96.8 0.012 2.5E-07 49.9 9.1 127 18-164 178-331 (342)
226 PF05958 tRNA_U5-meth_tr: tRNA 96.6 0.004 8.6E-08 52.9 5.4 43 19-63 198-246 (352)
227 COG2520 Predicted methyltransf 96.6 0.016 3.5E-07 49.2 8.8 75 18-104 189-289 (341)
228 PF01269 Fibrillarin: Fibrilla 96.5 0.0092 2E-07 47.7 6.2 100 16-126 72-208 (229)
229 COG0030 KsgA Dimethyladenosine 96.5 0.0042 9.1E-08 50.7 4.4 39 17-57 30-73 (259)
230 COG0357 GidB Predicted S-adeno 96.5 0.0062 1.3E-07 48.4 5.3 81 18-101 68-165 (215)
231 PF09445 Methyltransf_15: RNA 96.4 0.0039 8.4E-08 47.6 3.7 36 20-57 2-42 (163)
232 PF07757 AdoMet_MTase: Predict 96.3 0.0023 4.9E-08 45.6 1.8 35 3-45 50-89 (112)
233 PF05971 Methyltransf_10: Prot 96.3 0.0023 5E-08 53.3 2.1 40 18-57 103-147 (299)
234 KOG0820|consensus 96.3 0.0052 1.1E-07 50.6 4.0 41 17-57 58-101 (315)
235 COG0293 FtsJ 23S rRNA methylas 96.2 0.038 8.2E-07 43.7 8.5 85 17-104 45-159 (205)
236 PF13578 Methyltransf_24: Meth 96.0 0.0093 2E-07 41.3 3.5 72 22-102 1-103 (106)
237 KOG3987|consensus 95.9 0.0041 9E-08 49.5 1.5 77 18-103 113-206 (288)
238 KOG2352|consensus 95.9 0.021 4.5E-07 50.3 6.0 86 20-105 51-162 (482)
239 COG0742 N6-adenine-specific me 95.8 0.069 1.5E-06 41.6 8.0 83 18-107 44-157 (187)
240 PF06962 rRNA_methylase: Putat 95.7 0.033 7.2E-07 41.4 5.7 67 38-104 1-92 (140)
241 KOG1122|consensus 95.6 0.1 2.2E-06 45.4 9.2 114 16-129 240-399 (460)
242 PF04816 DUF633: Family of unk 95.6 0.088 1.9E-06 41.5 8.2 99 21-121 1-116 (205)
243 PF00398 RrnaAD: Ribosomal RNA 95.6 0.015 3.3E-07 47.2 4.0 39 17-57 30-73 (262)
244 COG1889 NOP1 Fibrillarin-like 95.6 0.22 4.7E-06 39.6 10.1 102 15-127 74-211 (231)
245 COG1867 TRM1 N2,N2-dimethylgua 95.3 0.076 1.6E-06 45.4 7.3 78 18-108 53-159 (380)
246 PF03059 NAS: Nicotianamine sy 94.9 0.14 3.1E-06 42.2 7.7 80 18-104 121-230 (276)
247 PF10354 DUF2431: Domain of un 94.7 0.11 2.4E-06 39.6 6.2 69 58-126 74-148 (166)
248 KOG2352|consensus 94.7 0.12 2.6E-06 45.6 7.0 97 18-117 296-431 (482)
249 COG5459 Predicted rRNA methyla 94.6 0.074 1.6E-06 45.5 5.2 88 18-105 114-226 (484)
250 PF07942 N2227: N2227-like pro 94.4 0.19 4.1E-06 41.4 7.1 33 18-52 57-94 (270)
251 COG0275 Predicted S-adenosylme 94.3 0.17 3.8E-06 42.2 6.8 39 18-56 24-68 (314)
252 PF11968 DUF3321: Putative met 94.3 0.073 1.6E-06 42.4 4.4 80 18-107 52-152 (219)
253 COG1064 AdhP Zn-dependent alco 94.2 0.22 4.9E-06 42.2 7.4 71 17-104 166-259 (339)
254 PF02005 TRM: N2,N2-dimethylgu 94.2 0.11 2.3E-06 44.8 5.5 91 18-108 50-159 (377)
255 PRK11524 putative methyltransf 94.1 0.061 1.3E-06 44.2 3.8 42 16-57 207-251 (284)
256 PRK01747 mnmC bifunctional tRN 93.6 0.26 5.7E-06 45.1 7.3 23 81-103 183-205 (662)
257 KOG1596|consensus 93.5 0.64 1.4E-05 38.0 8.5 80 16-103 155-260 (317)
258 KOG1562|consensus 93.4 1.1 2.4E-05 37.6 9.9 90 18-111 122-243 (337)
259 COG4627 Uncharacterized protei 93.4 0.1 2.3E-06 39.7 3.6 85 19-114 4-96 (185)
260 COG1189 Predicted rRNA methyla 93.3 0.11 2.4E-06 41.9 3.9 75 17-102 79-176 (245)
261 TIGR00006 S-adenosyl-methyltra 92.8 0.18 4E-06 42.2 4.6 39 18-56 21-64 (305)
262 PRK11760 putative 23S rRNA C24 92.5 0.11 2.3E-06 44.3 2.8 28 17-46 211-243 (357)
263 KOG1253|consensus 92.5 0.12 2.5E-06 45.9 3.1 77 16-105 108-218 (525)
264 COG4301 Uncharacterized conser 92.4 0.35 7.6E-06 39.6 5.5 85 18-105 79-194 (321)
265 PRK13699 putative methylase; P 92.4 0.17 3.7E-06 40.4 3.7 42 16-57 162-206 (227)
266 KOG1501|consensus 92.3 0.099 2.1E-06 46.0 2.4 37 18-54 67-107 (636)
267 cd08283 FDH_like_1 Glutathione 92.1 0.83 1.8E-05 38.8 7.9 40 16-55 183-228 (386)
268 PF04672 Methyltransf_19: S-ad 92.0 0.78 1.7E-05 37.7 7.2 85 19-103 70-189 (267)
269 PHA01634 hypothetical protein 91.4 0.37 8.1E-06 35.6 4.2 41 17-57 28-72 (156)
270 COG4076 Predicted RNA methylas 91.3 0.25 5.5E-06 38.9 3.5 38 19-57 34-75 (252)
271 COG0116 Predicted N6-adenine-s 91.0 0.99 2.1E-05 38.9 7.1 69 39-107 257-347 (381)
272 PF04989 CmcI: Cephalosporin h 90.9 0.21 4.4E-06 39.6 2.7 85 17-103 32-146 (206)
273 COG4798 Predicted methyltransf 90.6 1.8 3.8E-05 34.4 7.6 21 84-104 146-166 (238)
274 PF11599 AviRa: RRNA methyltra 90.0 0.23 5.1E-06 39.7 2.3 39 18-56 52-97 (246)
275 COG3897 Predicted methyltransf 89.4 0.42 9.1E-06 37.8 3.2 45 13-57 75-123 (218)
276 KOG3201|consensus 88.8 0.73 1.6E-05 35.5 4.1 80 19-106 31-142 (201)
277 COG3129 Predicted SAM-dependen 88.7 0.61 1.3E-05 37.9 3.8 40 17-56 78-122 (292)
278 PF02636 Methyltransf_28: Puta 88.5 0.27 5.8E-06 39.6 1.7 39 18-56 19-70 (252)
279 PF01795 Methyltransf_5: MraW 88.3 0.34 7.5E-06 40.6 2.3 39 18-56 21-64 (310)
280 KOG2730|consensus 88.3 0.36 7.8E-06 38.9 2.3 39 17-57 94-137 (263)
281 KOG2793|consensus 88.0 2.7 5.8E-05 34.2 7.2 101 18-118 87-213 (248)
282 KOG4058|consensus 87.2 0.66 1.4E-05 35.3 3.0 37 17-53 72-112 (199)
283 KOG2920|consensus 85.9 0.54 1.2E-05 38.9 2.1 33 18-50 117-153 (282)
284 COG2384 Predicted SAM-dependen 83.5 1.2 2.7E-05 35.6 3.1 39 19-57 18-61 (226)
285 PLN02353 probable UDP-glucose 82.2 9 0.0002 34.0 8.3 87 20-106 3-129 (473)
286 COG0031 CysK Cysteine synthase 81.4 0.75 1.6E-05 38.4 1.2 87 19-109 170-270 (300)
287 COG1565 Uncharacterized conser 81.3 2.7 5.8E-05 36.1 4.5 39 18-56 78-129 (370)
288 PF06859 Bin3: Bicoid-interact 80.6 1.2 2.6E-05 31.7 1.9 21 84-104 24-44 (110)
289 COG1063 Tdh Threonine dehydrog 80.1 10 0.00022 32.0 7.7 78 19-104 170-269 (350)
290 PF03721 UDPG_MGDP_dh_N: UDP-g 79.9 3.5 7.5E-05 31.8 4.4 85 21-106 3-122 (185)
291 KOG2651|consensus 79.8 2.2 4.8E-05 37.0 3.5 36 18-53 154-193 (476)
292 KOG2198|consensus 79.3 15 0.00032 31.7 8.3 90 15-104 153-296 (375)
293 PF03269 DUF268: Caenorhabditi 78.6 2.3 4.9E-05 32.7 2.9 23 84-106 91-113 (177)
294 PF01555 N6_N4_Mtase: DNA meth 78.1 1.7 3.7E-05 33.3 2.2 25 83-107 35-59 (231)
295 PF05050 Methyltransf_21: Meth 77.9 2.3 5.1E-05 30.8 2.8 33 23-55 1-42 (167)
296 PF07101 DUF1363: Protein of u 77.4 0.8 1.7E-05 32.0 0.2 14 21-34 6-21 (124)
297 PRK11524 putative methyltransf 76.9 4.3 9.4E-05 33.3 4.4 25 84-108 60-84 (284)
298 PRK13699 putative methylase; P 76.7 5 0.00011 32.0 4.6 24 84-107 52-75 (227)
299 PF02153 PDH: Prephenate dehyd 76.1 13 0.00028 30.0 6.9 76 32-118 7-94 (258)
300 PF00107 ADH_zinc_N: Zinc-bind 75.6 4.5 9.8E-05 28.3 3.7 70 30-104 9-89 (130)
301 PF05206 TRM13: Methyltransfer 75.5 2.3 5E-05 34.8 2.4 30 17-46 18-57 (259)
302 PF03141 Methyltransf_29: Puta 75.5 2.4 5.2E-05 37.8 2.6 32 83-115 446-477 (506)
303 COG0677 WecC UDP-N-acetyl-D-ma 74.8 14 0.0003 32.3 7.0 86 18-105 9-129 (436)
304 PRK10742 putative methyltransf 74.6 5.9 0.00013 32.3 4.5 33 19-53 90-127 (250)
305 KOG0024|consensus 74.5 9.3 0.0002 32.5 5.7 81 17-104 169-273 (354)
306 PRK09880 L-idonate 5-dehydroge 73.8 19 0.00041 29.8 7.6 82 18-104 170-266 (343)
307 PF12692 Methyltransf_17: S-ad 73.1 2.2 4.7E-05 32.3 1.5 28 19-46 30-62 (160)
308 PRK15057 UDP-glucose 6-dehydro 71.6 18 0.00039 31.2 7.1 82 36-119 22-133 (388)
309 cd08254 hydroxyacyl_CoA_DH 6-h 69.6 26 0.00056 28.3 7.4 83 17-104 165-263 (338)
310 KOG1252|consensus 69.4 3.2 6.9E-05 35.4 1.9 35 15-49 209-252 (362)
311 PLN02668 indole-3-acetate carb 69.1 2.9 6.2E-05 36.2 1.6 20 85-104 218-237 (386)
312 TIGR01202 bchC 2-desacetyl-2-h 67.8 24 0.00052 28.8 6.9 78 18-103 145-230 (308)
313 PF03514 GRAS: GRAS domain fam 67.5 7.4 0.00016 33.4 3.8 42 16-57 109-166 (374)
314 PRK11064 wecC UDP-N-acetyl-D-m 67.3 23 0.0005 30.7 6.9 99 18-118 3-134 (415)
315 cd05188 MDR Medium chain reduc 65.9 42 0.00091 25.8 7.7 81 17-104 134-232 (271)
316 KOG1098|consensus 64.9 3.6 7.9E-05 37.8 1.5 32 15-46 42-79 (780)
317 PF11312 DUF3115: Protein of u 62.4 5.5 0.00012 33.6 2.0 21 84-104 222-242 (315)
318 cd00315 Cyt_C5_DNA_methylase C 62.1 9.4 0.0002 31.1 3.3 38 20-57 2-43 (275)
319 cd08237 ribitol-5-phosphate_DH 61.2 46 0.00099 27.6 7.4 74 18-103 164-255 (341)
320 PF05430 Methyltransf_30: S-ad 61.0 18 0.00038 26.2 4.2 57 58-125 49-106 (124)
321 TIGR00006 S-adenosyl-methyltra 59.9 10 0.00022 31.8 3.2 22 84-105 220-241 (305)
322 PF02254 TrkA_N: TrkA-N domain 59.8 52 0.0011 22.3 7.7 65 37-112 22-104 (116)
323 PF01861 DUF43: Protein of unk 59.5 95 0.0021 25.3 9.2 38 18-55 45-86 (243)
324 COG0863 DNA modification methy 58.1 13 0.00028 30.0 3.5 40 18-57 223-265 (302)
325 KOG2798|consensus 57.7 23 0.0005 30.2 4.9 19 84-102 276-294 (369)
326 PRK11154 fadJ multifunctional 56.3 26 0.00056 32.7 5.5 38 19-56 310-353 (708)
327 PRK11559 garR tartronate semia 55.0 47 0.001 26.9 6.4 91 20-120 4-113 (296)
328 PRK00050 16S rRNA m(4)C1402 me 54.6 14 0.0003 30.8 3.2 22 84-105 216-237 (296)
329 cd08281 liver_ADH_like1 Zinc-d 53.4 84 0.0018 26.2 7.8 82 17-104 191-290 (371)
330 PF03446 NAD_binding_2: NAD bi 53.4 38 0.00083 25.0 5.2 91 21-121 4-112 (163)
331 PRK05225 ketol-acid reductoiso 52.7 44 0.00096 29.9 6.0 77 16-103 34-130 (487)
332 TIGR03366 HpnZ_proposed putati 51.9 92 0.002 24.8 7.6 80 18-104 121-218 (280)
333 COG3510 CmcI Cephalosporin hyd 51.1 71 0.0015 25.5 6.3 36 17-52 69-113 (237)
334 TIGR03451 mycoS_dep_FDH mycoth 50.3 1E+02 0.0022 25.5 7.8 82 17-103 176-275 (358)
335 PF01795 Methyltransf_5: MraW 49.2 13 0.00027 31.3 2.1 23 84-106 221-243 (310)
336 KOG2671|consensus 48.8 18 0.00038 31.3 2.9 35 17-51 208-245 (421)
337 PRK11730 fadB multifunctional 48.2 60 0.0013 30.4 6.5 38 19-56 314-356 (715)
338 cd08232 idonate-5-DH L-idonate 48.1 93 0.002 25.3 7.1 82 18-104 166-262 (339)
339 KOG2078|consensus 47.8 16 0.00035 32.3 2.5 40 18-57 250-292 (495)
340 TIGR02822 adh_fam_2 zinc-bindi 47.3 1.1E+02 0.0023 25.2 7.4 81 17-104 165-254 (329)
341 COG0287 TyrA Prephenate dehydr 47.3 41 0.0009 27.7 4.8 97 18-125 3-127 (279)
342 PRK15182 Vi polysaccharide bio 47.3 1.2E+02 0.0026 26.5 7.9 86 18-105 6-121 (425)
343 PLN03154 putative allyl alcoho 46.9 1.2E+02 0.0025 25.3 7.6 83 17-103 158-257 (348)
344 PF11899 DUF3419: Protein of u 46.3 34 0.00074 29.5 4.4 59 40-104 275-334 (380)
345 cd05278 FDH_like Formaldehyde 45.7 1.3E+02 0.0028 24.4 7.6 83 17-103 167-266 (347)
346 KOG0822|consensus 44.6 64 0.0014 29.5 5.8 84 19-102 369-476 (649)
347 COG0286 HsdM Type I restrictio 44.5 24 0.00052 31.4 3.2 38 18-55 187-233 (489)
348 PLN02545 3-hydroxybutyryl-CoA 44.1 99 0.0021 25.1 6.7 36 19-54 5-45 (295)
349 PF01358 PARP_regulatory: Poly 42.0 20 0.00043 29.9 2.2 69 18-106 59-136 (294)
350 KOG1269|consensus 41.9 20 0.00043 30.8 2.2 47 3-53 170-221 (364)
351 COG2813 RsmC 16S RNA G1207 met 41.5 1.2E+02 0.0026 25.5 6.6 38 84-121 53-90 (300)
352 KOG2539|consensus 40.5 36 0.00079 30.4 3.6 38 18-55 201-245 (491)
353 cd00218 GlcAT-I Beta1,3-glucur 40.5 1.3E+02 0.0029 24.1 6.6 81 35-118 30-117 (223)
354 PRK09489 rsmC 16S ribosomal RN 39.5 72 0.0016 27.0 5.3 35 84-118 92-126 (342)
355 PRK03659 glutathione-regulated 38.7 1.4E+02 0.0031 27.2 7.4 79 19-108 401-502 (601)
356 cd08261 Zn_ADH7 Alcohol dehydr 38.3 1.8E+02 0.004 23.5 7.5 83 17-104 159-258 (337)
357 COG1004 Ugd Predicted UDP-gluc 38.1 1.7E+02 0.0036 25.8 7.2 87 30-119 19-136 (414)
358 PRK10953 cysJ sulfite reductas 37.9 3.3E+02 0.0071 25.1 9.6 105 18-124 453-578 (600)
359 PF11899 DUF3419: Protein of u 37.6 70 0.0015 27.7 4.9 35 17-52 35-73 (380)
360 PRK12491 pyrroline-5-carboxyla 37.6 1.8E+02 0.004 23.5 7.2 73 19-103 3-95 (272)
361 cd08245 CAD Cinnamyl alcohol d 36.5 2E+02 0.0042 23.2 7.3 81 17-104 162-256 (330)
362 PF03492 Methyltransf_7: SAM d 35.9 20 0.00043 30.3 1.3 19 85-103 164-182 (334)
363 TIGR03201 dearomat_had 6-hydro 35.9 1.9E+02 0.0041 23.8 7.2 82 17-103 166-271 (349)
364 cd08255 2-desacetyl-2-hydroxye 34.2 2.3E+02 0.0049 22.1 7.7 83 17-104 97-190 (277)
365 PRK07417 arogenate dehydrogena 34.1 1.1E+02 0.0024 24.7 5.4 70 21-101 3-88 (279)
366 PF06897 DUF1269: Protein of u 33.9 1E+02 0.0022 21.4 4.5 39 83-121 41-79 (102)
367 cd08293 PTGR2 Prostaglandin re 33.7 2.2E+02 0.0048 23.1 7.3 81 19-103 156-253 (345)
368 cd08234 threonine_DH_like L-th 33.3 2.5E+02 0.0053 22.6 7.4 82 17-103 159-256 (334)
369 TIGR03026 NDP-sugDHase nucleot 33.1 1.4E+02 0.003 25.7 6.1 83 21-104 3-120 (411)
370 KOG1158|consensus 32.9 3.1E+02 0.0068 25.6 8.5 38 84-121 578-620 (645)
371 TIGR00675 dcm DNA-methyltransf 31.6 1.2E+02 0.0027 25.1 5.4 37 21-57 1-41 (315)
372 cd08294 leukotriene_B4_DH_like 31.3 2.7E+02 0.0059 22.2 7.7 82 17-103 143-240 (329)
373 PRK07502 cyclohexadienyl dehyd 31.0 2.4E+02 0.0052 23.0 7.0 74 19-103 7-99 (307)
374 PRK07530 3-hydroxybutyryl-CoA 30.9 2.6E+02 0.0057 22.5 7.2 37 18-54 4-45 (292)
375 PRK09260 3-hydroxybutyryl-CoA 30.9 2.4E+02 0.0053 22.7 7.0 35 20-54 3-42 (288)
376 cd00401 AdoHcyase S-adenosyl-L 30.9 2.4E+02 0.0052 24.7 7.2 73 17-104 201-289 (413)
377 PLN02586 probable cinnamyl alc 30.9 2.1E+02 0.0046 23.8 6.8 20 84-103 258-277 (360)
378 PF07991 IlvN: Acetohydroxy ac 30.1 1E+02 0.0022 23.6 4.2 76 17-103 3-94 (165)
379 COG1255 Uncharacterized protei 29.6 43 0.00092 24.4 1.9 31 17-47 13-47 (129)
380 cd08285 NADP_ADH NADP(H)-depen 29.5 3.1E+02 0.0068 22.3 7.8 83 17-103 166-265 (351)
381 KOG2912|consensus 29.4 26 0.00056 30.0 0.9 37 21-57 106-147 (419)
382 PRK14045 1-aminocyclopropane-1 28.9 32 0.0007 28.7 1.4 27 20-46 186-221 (329)
383 PF01408 GFO_IDH_MocA: Oxidore 28.7 1.9E+02 0.0041 19.5 7.5 36 20-55 2-45 (120)
384 PRK05808 3-hydroxybutyryl-CoA 28.1 2.2E+02 0.0047 22.9 6.2 35 20-54 5-44 (282)
385 TIGR02437 FadB fatty oxidation 28.0 1.9E+02 0.0041 27.1 6.4 38 19-56 314-356 (714)
386 KOG0022|consensus 27.8 96 0.0021 26.6 4.0 39 16-54 191-235 (375)
387 cd08239 THR_DH_like L-threonin 27.6 3.3E+02 0.0072 22.0 7.8 81 18-104 164-262 (339)
388 TIGR02441 fa_ox_alpha_mit fatt 27.1 1.7E+02 0.0037 27.6 5.9 38 19-56 336-378 (737)
389 COG0059 IlvC Ketol-acid reduct 26.9 3.1E+02 0.0066 23.4 6.8 77 16-103 16-108 (338)
390 PF06557 DUF1122: Protein of u 26.7 66 0.0014 24.7 2.6 21 84-104 66-86 (170)
391 PRK13403 ketol-acid reductoiso 26.6 2.1E+02 0.0045 24.5 5.9 77 16-103 14-105 (335)
392 COG0604 Qor NADPH:quinone redu 26.5 3.8E+02 0.0082 22.3 7.8 84 16-104 141-241 (326)
393 KOG0023|consensus 26.4 1.1E+02 0.0024 26.2 4.1 21 84-104 259-279 (360)
394 PF08468 MTS_N: Methyltransfer 26.4 95 0.0021 23.2 3.5 54 58-120 68-121 (155)
395 PRK07066 3-hydroxybutyryl-CoA 26.3 3.4E+02 0.0074 22.8 7.1 38 18-55 7-49 (321)
396 cd08295 double_bond_reductase_ 26.1 3.6E+02 0.0078 21.9 7.8 83 17-103 151-250 (338)
397 TIGR00497 hsdM type I restrict 25.9 4.4E+02 0.0094 23.4 8.1 38 18-55 218-264 (501)
398 PRK08268 3-hydroxy-acyl-CoA de 25.7 1.9E+02 0.004 25.9 5.8 37 19-55 8-49 (507)
399 PRK08293 3-hydroxybutyryl-CoA 25.7 3.3E+02 0.0071 22.0 6.8 37 19-55 4-45 (287)
400 PRK00299 sulfur transfer prote 25.7 2E+02 0.0043 18.8 4.7 35 86-120 25-59 (81)
401 COG0698 RpiB Ribose 5-phosphat 25.5 36 0.00078 25.7 1.0 31 23-54 63-98 (151)
402 cd03420 SirA_RHOD_Pry_redox Si 25.2 1.8E+02 0.004 18.2 4.7 35 87-121 16-50 (69)
403 TIGR00872 gnd_rel 6-phosphoglu 24.3 2E+02 0.0043 23.5 5.3 72 21-103 3-92 (298)
404 KOG1227|consensus 24.1 2E+02 0.0043 24.6 5.2 39 19-57 196-239 (351)
405 PRK06130 3-hydroxybutyryl-CoA 23.9 3.9E+02 0.0084 21.7 7.0 36 19-54 5-45 (311)
406 TIGR01692 HIBADH 3-hydroxyisob 23.9 3.5E+02 0.0076 21.8 6.7 76 36-121 19-108 (288)
407 PF04445 SAM_MT: Putative SAM- 23.9 65 0.0014 26.0 2.3 30 19-50 77-111 (234)
408 PF14737 DUF4470: Domain of un 23.1 1.6E+02 0.0035 20.0 3.9 35 16-50 22-67 (100)
409 PRK06214 sulfite reductase; Pr 22.8 5.8E+02 0.013 23.1 10.0 123 19-159 384-527 (530)
410 PRK08655 prephenate dehydrogen 22.4 5.2E+02 0.011 22.6 7.8 86 20-116 2-105 (437)
411 TIGR02825 B4_12hDH leukotriene 22.0 4.2E+02 0.0092 21.3 7.4 82 17-103 138-236 (325)
412 PLN02356 phosphateglycerate ki 21.6 85 0.0018 27.6 2.7 28 19-46 251-287 (423)
413 COG0673 MviM Predicted dehydro 20.9 4.5E+02 0.0099 21.2 8.9 53 18-70 3-78 (342)
414 PF10727 Rossmann-like: Rossma 20.8 1.5E+02 0.0033 21.3 3.5 76 18-104 10-104 (127)
415 PLN02556 cysteine synthase/L-3 20.7 93 0.002 26.6 2.7 82 19-102 217-311 (368)
416 KOG3543|consensus 20.4 3.5E+02 0.0077 25.6 6.4 87 34-130 481-576 (1218)
417 PF14252 DUF4347: Domain of un 20.3 3.9E+02 0.0084 20.2 6.3 70 30-103 16-97 (165)
418 PF01596 Methyltransf_3: O-met 20.2 4.1E+02 0.0089 20.7 6.1 32 90-121 63-94 (205)
419 PRK10309 galactitol-1-phosphat 20.1 4.8E+02 0.01 21.2 8.1 81 18-103 161-259 (347)
No 1
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=100.00 E-value=2e-36 Score=236.56 Aligned_cols=158 Identities=26% Similarity=0.483 Sum_probs=129.5
Q ss_pred CCCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------
Q psy13086 1 MDWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------ 57 (169)
Q Consensus 1 ~~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------ 57 (169)
+||+++|++. .+.+||||||.| +|..+|+.+++|||++...+..|.+++.
T Consensus 8 ~~~~~~f~~~-------~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l 80 (195)
T PF02390_consen 8 LDWQEIFGND-------NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL 80 (195)
T ss_dssp TCHHHHHTSC-------CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH
T ss_pred cCHHHHcCCC-------CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH
Confidence 5899999997 469999999999 8889999999999999998888765422
Q ss_pred ------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc-CCCceecCccc
Q psy13086 58 ------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE-HPLFVECDLEE 130 (169)
Q Consensus 58 ------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~-~~~f~~~~~~~ 130 (169)
+++|.|+++|||||++.+|++||++.+.+++.++++|+|||.|+++||+++|++|+.+++.. ++.|+......
T Consensus 81 ~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~ 160 (195)
T PF02390_consen 81 RRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESD 160 (195)
T ss_dssp HHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TES
T ss_pred hhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCc
Confidence 78999999999999999999999999999999999999999999999999999999999999 79999874332
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEec
Q psy13086 131 LKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRG 166 (169)
Q Consensus 131 ~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~ 166 (169)
...+.|. ...++.|+||++|+++|++||+++|+|+
T Consensus 161 ~~~~~~~-~~~~~~T~yE~k~~~~G~~i~~~~f~k~ 195 (195)
T PF02390_consen 161 DLHESPF-DDDYIPTKYERKWLAEGKPIYRLIFKKV 195 (195)
T ss_dssp SGGCSCC-CTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred ccccCCC-CCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence 1113443 2368999999999999999999999985
No 2
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=222.46 Aligned_cols=159 Identities=26% Similarity=0.402 Sum_probs=131.4
Q ss_pred CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086 2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------- 57 (169)
Q Consensus 2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------- 57 (169)
||+++|++.. .+.+||||||.| +|+.+|+.+++|||+....+..|.+++.
T Consensus 39 ~~~~~f~~~~------~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~ 112 (227)
T COG0220 39 DWSALFGNNN------APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD 112 (227)
T ss_pred hHHHHhCCCC------CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH
Confidence 6889999974 579999999999 9999999999999999998887764321
Q ss_pred -----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086 58 -----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK 132 (169)
Q Consensus 58 -----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~ 132 (169)
+++|.|+++|||||++.+|++||++++.+++.++++|||||.|+++||+++|++|+......++.+......+.+
T Consensus 113 ~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T COG0220 113 YLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLH 192 (227)
T ss_pred hcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccc
Confidence 599999999999999999999999999999999999999999999999999999966555656322221111111
Q ss_pred cCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEecc
Q psy13086 133 RTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGR 167 (169)
Q Consensus 133 ~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~ 167 (169)
.+....+.++.|+||+++.+.|..|+++.|+|+.
T Consensus 193 -~~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~ 226 (227)
T COG0220 193 -YNLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK 226 (227)
T ss_pred -cccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence 1122245689999999999999999999999975
No 3
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=100.00 E-value=6.9e-33 Score=215.98 Aligned_cols=158 Identities=27% Similarity=0.382 Sum_probs=134.7
Q ss_pred CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086 2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------- 57 (169)
Q Consensus 2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------- 57 (169)
+|.++|++. .+++||||||+| ++.++|+.+|+|||+|+.|++.|++++.
T Consensus 8 ~~~~~f~~~-------~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~ 80 (194)
T TIGR00091 8 DFATVFGNK-------APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD 80 (194)
T ss_pred CHHHHhCCC-------CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH
Confidence 688999864 579999999999 7788999999999999999999875421
Q ss_pred -----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086 58 -----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK 132 (169)
Q Consensus 58 -----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~ 132 (169)
+++|.++++|||||++..|++++++.+.++++++++|||||.|+++||...|+.++.+.+..++.|+........
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~~ 160 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTDL 160 (194)
T ss_pred hhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEeccccccc
Confidence 478889999999999999999999999999999999999999999999999999999999999988876433211
Q ss_pred cCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEecc
Q psy13086 133 RTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGR 167 (169)
Q Consensus 133 ~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~ 167 (169)
.+.+. ...+..|+||++|+++|++||+++|+|+|
T Consensus 161 ~~~~~-~~~~~~T~~E~~~~~~g~~i~~~~~~~~~ 194 (194)
T TIGR00091 161 NNSPL-SRPRNMTEYEQRFERLGHPVFDLCFERLP 194 (194)
T ss_pred CCCcc-cccCcCCHHHHHHHHCCCCeEEEEEEECC
Confidence 12221 12345799999999999999999999975
No 4
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.96 E-value=3.8e-29 Score=212.20 Aligned_cols=140 Identities=19% Similarity=0.266 Sum_probs=123.1
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD 69 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d 69 (169)
++.+||||||+| +|..+|+.+++|||+++.|++.|.+++. +++|.|+++||+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 678999999999 8888999999999999999998875432 688999999999
Q ss_pred CcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHH
Q psy13086 70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQ 149 (169)
Q Consensus 70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~ 149 (169)
||++.+| ||++.+.++++++|+|+|||.+.+.||+.+|++++.+.+..++.|...... + .+..+.|+||+
T Consensus 203 PW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~~----~----~~~~i~TkyE~ 272 (390)
T PRK14121 203 PWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIKK----N----AQLEVSSKYED 272 (390)
T ss_pred Cccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeeccc----C----CCCCCCCHHHH
Confidence 9999888 788899999999999999999999999999999999999988877642111 1 24478999999
Q ss_pred HHHHcCCCeEEEEEEecc
Q psy13086 150 KVTRNKGEKFCAVFRRGR 167 (169)
Q Consensus 150 ~~~~~g~~i~~~~~~r~~ 167 (169)
+|+++|++||+++|++.+
T Consensus 273 r~~~~G~~Iy~l~~~~~~ 290 (390)
T PRK14121 273 RWKKQNKDIYDLRIYNLE 290 (390)
T ss_pred HHHHCCCCEEEEEEEeCC
Confidence 999999999999999864
No 5
>KOG3115|consensus
Probab=99.94 E-value=2.9e-27 Score=183.31 Aligned_cols=166 Identities=61% Similarity=1.033 Sum_probs=151.6
Q ss_pred CCCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------
Q psy13086 1 MDWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------ 57 (169)
Q Consensus 1 ~~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------ 57 (169)
|||+++|+++- .++++...+.|||||.| |+..||+..++|+||..++.++.++||.
T Consensus 45 mDWS~~yp~f~-~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr 123 (249)
T KOG3115|consen 45 MDWSKYYPDFR-RALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLR 123 (249)
T ss_pred CcHHHhhhhhh-hhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeee
Confidence 79999999986 44566688999999999 8899999999999999999999887653
Q ss_pred -------------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCce
Q psy13086 58 -------------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFV 124 (169)
Q Consensus 58 -------------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~ 124 (169)
++++..++.||||+|+.+.++++++...++.+++-+|++||.++..||+.++++||..++.+||.|+
T Consensus 124 ~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hplfe 203 (249)
T KOG3115|consen 124 TNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHPLFE 203 (249)
T ss_pred ccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCcHhh
Confidence 5677778899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeccC
Q psy13086 125 ECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRH 168 (169)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~~ 168 (169)
.+...... ++++.......|+.-+++.++|...+..+|+|++.
T Consensus 204 ~lt~ee~~-~d~~v~~~~~~teeg~kv~r~~g~~f~a~f~r~~~ 246 (249)
T KOG3115|consen 204 RLTEEEEE-NDPCVELLSNATEEGKKVARNGGKKFVAVFRRIPN 246 (249)
T ss_pred hcchhhhc-CCcchhhhhhhhhhcccccccCCceeeeeeeeccC
Confidence 98888777 78887888999999999999999999999999874
No 6
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.94 E-value=7.4e-27 Score=205.25 Aligned_cols=140 Identities=22% Similarity=0.295 Sum_probs=118.8
Q ss_pred CCCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------
Q psy13086 1 MDWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------ 57 (169)
Q Consensus 1 ~~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------ 57 (169)
++|.++|+.. .+.+||||||.| +|..+|+.+++|||++...+..|.+++.
T Consensus 338 i~~eklf~~~-------~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~ 410 (506)
T PRK01544 338 FSKEKLVNEK-------RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLIL 410 (506)
T ss_pred CCHHHhCCCC-------CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 3566667653 689999999999 8899999999999999987776643311
Q ss_pred -----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086 58 -----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK 132 (169)
Q Consensus 58 -----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~ 132 (169)
+++|.++++|||||+|.+|++||++++.+++.++++|||||.++++||+.+|++|+...+.+++.|+..... .
T Consensus 411 ~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~~~~--~ 488 (506)
T PRK01544 411 NDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEIINKN--D 488 (506)
T ss_pred HhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEecccc--c
Confidence 789999999999999999999999999999999999999999999999999999999999999988875322 1
Q ss_pred cCCCCCCCCCCCCHHHHHH
Q psy13086 133 RTDPVVDKLYQSTEEGQKV 151 (169)
Q Consensus 133 ~~~~~~~~~~~~T~ye~~~ 151 (169)
+..+ .+.++.|+||+|+
T Consensus 489 ~~~~--~~~~~~T~yE~k~ 505 (506)
T PRK01544 489 YLKP--HDNYVITKYHQKA 505 (506)
T ss_pred ccCC--CCCCCCchhccCc
Confidence 1222 3678999999975
No 7
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.89 E-value=1.2e-22 Score=159.33 Aligned_cols=142 Identities=20% Similarity=0.315 Sum_probs=114.8
Q ss_pred CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086 2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------- 57 (169)
Q Consensus 2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------- 57 (169)
+|.++|+.. +.+|||||||+| ++..+|+.+|+|||+|+.|++.|++++.
T Consensus 32 ~~~~~~~~~-------~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~ 104 (202)
T PRK00121 32 DWAELFGND-------APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL 104 (202)
T ss_pred CHHHHcCCC-------CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH
Confidence 677888883 688999999999 6677888899999999999999875421
Q ss_pred -----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086 58 -----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK 132 (169)
Q Consensus 58 -----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~ 132 (169)
+++|.+.+.|++||.+..|+.++.....++++++++|||||.|+++++...+..++.+.+.+++........ .
T Consensus 105 ~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~~~--~ 182 (202)
T PRK00121 105 DMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSEAG--D 182 (202)
T ss_pred HHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccccch--h
Confidence 457788888999988877777766678999999999999999999999999999999999988754442211 1
Q ss_pred cCCCCCCCCCCCCHHHHHHHHc
Q psy13086 133 RTDPVVDKLYQSTEEGQKVTRN 154 (169)
Q Consensus 133 ~~~~~~~~~~~~T~ye~~~~~~ 154 (169)
|. ...+..+.|+||++|+.+
T Consensus 183 ~~--~~~~~~~~~~~~~~~~~~ 202 (202)
T PRK00121 183 YV--PRPEGRPMTEYERKGLRK 202 (202)
T ss_pred hc--ccCccCCCcHHHHHhhcC
Confidence 11 123679999999999853
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=1.3e-16 Score=127.97 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=90.6
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc---------ccceEEEeCCCCcccccc---hhh
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL---------YLKKMFFLYPDPHFKRCK---YKW 79 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~---------~~d~v~~~f~d~~f~~~h---~~~ 79 (169)
++.+||||||||| +++..+..+|+|+|+|+.|++.|++++.. .-|+..++|+|.+||... ..|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 3789999999999 66777788999999999999999998761 223334789999998532 122
Q ss_pred hcc-cHHHHHHHHHhccCCcEEEEEeCC--------hHHHHHHHH-HHhcCCCceecCccccccCCCCCCCCCCCCHHHH
Q psy13086 80 RII-NQNLLSEYAYVLSEGGIVYTITDV--------KDLHDWIVS-HFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQ 149 (169)
Q Consensus 80 ~~~-~~~~l~~~~rvLkpGG~l~i~~d~--------~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~ 149 (169)
.+. .+.+|+|++|||||||++.+..-. ..|..|... .++.-..+..-....-.|-..-...++.......
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~ 210 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQ 210 (238)
T ss_pred cCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHH
Confidence 222 378999999999999999876421 123444444 3333222221000000000000124466777788
Q ss_pred HHHHcCCCe
Q psy13086 150 KVTRNKGEK 158 (169)
Q Consensus 150 ~~~~~g~~i 158 (169)
+..++|...
T Consensus 211 ~~~~~gf~~ 219 (238)
T COG2226 211 MIEKAGFEE 219 (238)
T ss_pred HHHhcCceE
Confidence 888877764
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.58 E-value=4.4e-15 Score=118.37 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=81.2
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEE-----eC
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFF-----LY 67 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~-----~f 67 (169)
+.+|||||||.| +|+. +++|+|+|+|+++|+.|+.+.. +++|.|.. ++
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 688999999999 4444 4899999999999999986432 46776652 45
Q ss_pred CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK 132 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~ 132 (169)
||| ..+++.+.+.+||||.++++|.+.....++...+..+..+.+++.++++
T Consensus 138 ~dp-------------~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~ 189 (243)
T COG2227 138 PDP-------------ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHD 189 (243)
T ss_pred CCH-------------HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchh
Confidence 554 4799999999999999999999999888888888877777777777654
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=5.7e-15 Score=104.10 Aligned_cols=87 Identities=18% Similarity=0.313 Sum_probs=58.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCCC--------cccccchhh---
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPDP--------HFKRCKYKW--- 79 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d~--------~f~~~h~~~--- 79 (169)
+.+|||||||+| +++.+|+.+++|||+|+.|++.|++++. ..-+.+.+...|- .||......
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 689999999999 6666799999999999999999998872 1111221111110 111110000
Q ss_pred -hc----ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 80 -RI----INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 80 -~~----~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.+ ...++++.+++.|+|||++++.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 00 12568999999999999999875
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=1.9e-14 Score=120.40 Aligned_cols=136 Identities=9% Similarity=0.037 Sum_probs=84.3
Q ss_pred CCeEEEEcCccc-ccC--cCCCCcEEEEeCCHHHHHHHHHHhcc--ccceEE--------EeCCCCccccc------chh
Q psy13086 18 KVEFVDVGCGKL-YLP--MFPSTLILGLEIRVKVSDYVIDEWSL--YLKKMF--------FLYPDPHFKRC------KYK 78 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~--~~p~~~v~GiDis~~~l~~a~~~~~~--~~d~v~--------~~f~d~~f~~~------h~~ 78 (169)
+.+|||||||+| ++. ..++.+|+|||+|++|++.|+++... ..+.+. +.+++..||.. +|.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 568999999999 221 12467999999999999999876431 001111 12333345532 222
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCe
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEK 158 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i 158 (169)
.. ...++++++++|||||.+++.+.......+............+++.....| ..++...+++....+.|..+
T Consensus 212 ~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~-----~~f~tp~eL~~lL~~aGf~i 284 (322)
T PLN02396 212 AN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQW-----SSFVTPEELSMILQRASVDV 284 (322)
T ss_pred CC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCc-----cCCCCHHHHHHHHHHcCCeE
Confidence 11 368999999999999999999876654333322222111122233222222 23577888999999999887
Q ss_pred EE
Q psy13086 159 FC 160 (169)
Q Consensus 159 ~~ 160 (169)
..
T Consensus 285 ~~ 286 (322)
T PLN02396 285 KE 286 (322)
T ss_pred EE
Confidence 43
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.56 E-value=7.1e-15 Score=117.89 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=56.0
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----cccc-----eEEEeCCCCcccccc---hh
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----LYLK-----KMFFLYPDPHFKRCK---YK 78 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----~~~d-----~v~~~f~d~~f~~~h---~~ 78 (169)
++.+||||||||| +++.. |+..|+|+|+|++|++.|++++. ..++ +..++|+|.+||..- ..
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 3679999999999 55554 66899999999999999998765 1222 223567777777421 11
Q ss_pred hhcc-cHHHHHHHHHhccCCcEEEEEe
Q psy13086 79 WRII-NQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 79 ~~~~-~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+.+. ...+++|++|+|||||++.+..
T Consensus 127 rn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 127 RNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 2221 3679999999999999998864
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=4.7e-15 Score=100.64 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=54.7
Q ss_pred EEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-----eEEEeCCCCccccc------chhhhcccH
Q psy13086 22 VDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-----KMFFLYPDPHFKRC------KYKWRIINQ 84 (169)
Q Consensus 22 LDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-----~v~~~f~d~~f~~~------h~~~~~~~~ 84 (169)
||||||+| +++. +..+++|+|+|+.|++.++++.. ..++ .-.++|++.+||.. |+.. ...
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CHH
Confidence 89999999 5555 78999999999999999998765 1111 11245666677642 2221 136
Q ss_pred HHHHHHHHhccCCcEEEE
Q psy13086 85 NLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i 102 (169)
.+++++.|+|||||.++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 899999999999999986
No 14
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.52 E-value=5.5e-14 Score=114.34 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=60.8
Q ss_pred CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-------cc-----cceEEEeCCCCccccc----
Q psy13086 18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-------LY-----LKKMFFLYPDPHFKRC---- 75 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-------~~-----~d~v~~~f~d~~f~~~---- 75 (169)
+.+||||||||| +++.. |+.+|+|+|+|++|++.|+++.. .. .|...++|++..||..
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 678999999999 45543 56799999999999999986532 01 1112245556566642
Q ss_pred --chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 76 --KYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 76 --h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
|+.. ....++++++|+|||||++++.+
T Consensus 154 ~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 154 GLRNVV--DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ccccCC--CHHHHHHHHHHHcCcCcEEEEEE
Confidence 2111 13679999999999999999875
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=2.4e-13 Score=109.77 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=78.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH-hc------------cccceEEEeCCCCcccccchhh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE-WS------------LYLKKMFFLYPDPHFKRCKYKW 79 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~-~~------------~~~d~v~~~f~d~~f~~~h~~~ 79 (169)
+.+|||||||+| ++..+|+.+++|+|+|+.|++.|+++ +. +++|.|.+.+.- |+..
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l------~~~~ 103 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAAL------QWVP 103 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhh------hhCC
Confidence 679999999999 66777888999999999999999764 21 234443332211 2211
Q ss_pred hcccHHHHHHHHHhccCCcEEEEEeCCh---HHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCC
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTITDVK---DLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKG 156 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~---~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~ 156 (169)
....++++++++|||||.+++..... ...... ..+.....|...... ..|.. .........|.....+.|.
T Consensus 104 --d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~-~~~~~--~~~~~~~~~~~~~l~~aGf 177 (255)
T PRK14103 104 --EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV-RALARREPWAKLLRD-IPFRV--GAVVQTPAGYAELLTDAGC 177 (255)
T ss_pred --CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH-HHHhccCchhHHhcc-ccccc--CcCCCCHHHHHHHHHhCCC
Confidence 12679999999999999999875321 112111 112211222211000 00000 1133567789999999998
Q ss_pred Ce
Q psy13086 157 EK 158 (169)
Q Consensus 157 ~i 158 (169)
.+
T Consensus 178 ~v 179 (255)
T PRK14103 178 KV 179 (255)
T ss_pred eE
Confidence 65
No 16
>KOG1540|consensus
Probab=99.51 E-value=5.8e-14 Score=112.79 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=96.9
Q ss_pred CCccCCCCCCCCCCCCCeEEEEcCccc-cc----CcCC------CCcEEEEeCCHHHHHHHHHHhc------------cc
Q psy13086 3 WSPLYPELKDPTCEKKVEFVDVGCGKL-YL----PMFP------STLILGLEIRVKVSDYVIDEWS------------LY 59 (169)
Q Consensus 3 ~~~~f~~~~~~~~~~~~~iLDiGCG~G-la----~~~p------~~~v~GiDis~~~l~~a~~~~~------------~~ 59 (169)
|+++|-+-.+|+ +..++||++|||| +| ...+ +.+|+++|||+.|+..+++|.. ..
T Consensus 88 WKd~~v~~L~p~--~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 88 WKDMFVSKLGPG--KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHhhhccCCC--CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 888887776664 4589999999999 22 2222 2799999999999999988762 23
Q ss_pred cceEEEeCCCCcccccc---hhhhcc-cHHHHHHHHHhccCCcEEEEEeCC--h-HHHHHHHH-----HHhcCCCceecC
Q psy13086 60 LKKMFFLYPDPHFKRCK---YKWRII-NQNLLSEYAYVLSEGGIVYTITDV--K-DLHDWIVS-----HFTEHPLFVECD 127 (169)
Q Consensus 60 ~d~v~~~f~d~~f~~~h---~~~~~~-~~~~l~~~~rvLkpGG~l~i~~d~--~-~~~~~~~~-----~~~~~~~f~~~~ 127 (169)
-|+..++|+|.+||.-. -.|... .++.++|.+|||||||+|.+-.-. + .+..|+.. .+..-+ +++.
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG--~~ia 243 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLG--EIIA 243 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhh--Hhhh
Confidence 36667889998888421 112222 368999999999999999876422 2 23333332 211110 1110
Q ss_pred -cccccc--CCCCCCCCCCCCHHHHHHHHcCCCeEE
Q psy13086 128 -LEELKR--TDPVVDKLYQSTEEGQKVTRNKGEKFC 160 (169)
Q Consensus 128 -~~~~~~--~~~~~~~~~~~T~ye~~~~~~g~~i~~ 160 (169)
+...+. -.- ...+.+..+|+.+....|.+.-.
T Consensus 244 gd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 244 GDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 000000 000 12456777999999999988753
No 17
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.48 E-value=7.4e-14 Score=113.92 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=68.2
Q ss_pred CCeEEEEcCccc-----ccCcCCC---CcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCcccccchhhhcccHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPS---TLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRCKYKWRIINQN 85 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~---~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~h~~~~~~~~~ 85 (169)
..+|||||||+| ++...+. .+++|+|+|+.|++.|+++.+ ...|...++|++..||..... ..+.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~---~~~~ 162 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI---YAPC 162 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe---cCCC
Confidence 478999999999 4444553 479999999999999988754 112222345666666654321 2345
Q ss_pred HHHHHHHhccCCcEEEEEeCChHHHHHHHHHH
Q psy13086 86 LLSEYAYVLSEGGIVYTITDVKDLHDWIVSHF 117 (169)
Q Consensus 86 ~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~ 117 (169)
.+++++|+|||||.|+++++.+.....+...+
T Consensus 163 ~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 163 KAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred CHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 68999999999999999987766554444443
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=2e-13 Score=110.09 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=59.8
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcccccc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFKRCK 76 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~~~h 76 (169)
++.+|||||||+| ++..+|..+++|+|+|+.|++.|+++++ .++|.|...+. .|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~------l~ 104 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANAS------LQ 104 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccC------hh
Confidence 3678999999999 6677788999999999999999998754 12333322221 12
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+.. ....++++++++|||||.+++..
T Consensus 105 ~~~--d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WLP--DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hCC--CHHHHHHHHHHhcCCCcEEEEEC
Confidence 211 13579999999999999999875
No 19
>KOG1270|consensus
Probab=99.45 E-value=9.8e-14 Score=111.81 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=62.3
Q ss_pred CeEEEEcCccc-ccCcC--CCCcEEEEeCCHHHHHHHHHHhc------cccceEEEeCC-------CCccccc------c
Q psy13086 19 VEFVDVGCGKL-YLPMF--PSTLILGLEIRVKVSDYVIDEWS------LYLKKMFFLYP-------DPHFKRC------K 76 (169)
Q Consensus 19 ~~iLDiGCG~G-la~~~--p~~~v~GiDis~~~l~~a~~~~~------~~~d~v~~~f~-------d~~f~~~------h 76 (169)
.+|||||||+| |++.. -+++|+|||++..|++.|++... ..+. ..+.|. -+.||.. +
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~-y~l~~~~~~~E~~~~~fDaVvcsevle 169 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIA-YRLEYEDTDVEGLTGKFDAVVCSEVLE 169 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccc-eeeehhhcchhhcccccceeeeHHHHH
Confidence 56999999999 44322 25899999999999999987632 0000 001111 1124431 2
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH 116 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~ 116 (169)
|... .+.+++.+.+.|||||.++++|-+.....|....
T Consensus 170 HV~d--p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i 207 (282)
T KOG1270|consen 170 HVKD--PQEFLNCLSALLKPNGRLFITTINRTILSFAGTI 207 (282)
T ss_pred HHhC--HHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc
Confidence 2211 3689999999999999999999777665554433
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=2.6e-13 Score=110.51 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc-------ccceEEEeCCCCcccccchhhhc--
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL-------YLKKMFFLYPDPHFKRCKYKWRI-- 81 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~-------~~d~v~~~f~d~~f~~~h~~~~~-- 81 (169)
.++.+|||||||+| ++..+ +.+|+|+|+|+.|++.|+++... ..|.....+++..||.......+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence 45679999999999 44443 57999999999999999987541 12222234555566643221100
Q ss_pred ----ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 ----INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ----~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....++++++++|||||.|++..
T Consensus 130 ~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 130 LSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 13579999999999999999864
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=2.9e-13 Score=113.95 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=61.6
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------cccceEEEeCCCCccccc------
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------LYLKKMFFLYPDPHFKRC------ 75 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------~~~d~v~~~f~d~~f~~~------ 75 (169)
++.+|||||||+| +++.+ +.+|+|||+|+.|++.|++++. ...|...+.|++..||..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 3578999999999 55555 6799999999999999987653 111222234566666642
Q ss_pred chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+|.. ....++++++|+|||||.|++.+
T Consensus 197 ~h~~--d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 197 EHMP--DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hccC--CHHHHHHHHHHHcCCCcEEEEEE
Confidence 2211 12579999999999999999975
No 22
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.43 E-value=1.6e-14 Score=100.22 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=46.4
Q ss_pred EEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCCCccc
Q psy13086 22 VDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPDPHFK 73 (169)
Q Consensus 22 LDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d~~f~ 73 (169)
||||||+| +...+|..+++|+|+|+.|++.|++++. +++|.|.+...
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v----- 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV----- 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-----
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-----
Confidence 79999999 5556688999999999999988876543 14444433222
Q ss_pred ccchhhhcccHHHHHHHHHhccCCcEE
Q psy13086 74 RCKYKWRIINQNLLSEYAYVLSEGGIV 100 (169)
Q Consensus 74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l 100 (169)
.||... ...+++.++++|||||.|
T Consensus 76 -l~~l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 -LHHLED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TS--S---HHHHHHHHTTT-TSS-EE
T ss_pred -Hhhhhh--HHHHHHHHHHHcCCCCCC
Confidence 222211 368999999999999986
No 23
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.43 E-value=3.4e-13 Score=108.66 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=58.6
Q ss_pred CCeEEEEcCccc-----ccC--cCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEe---CCCCcccc------cc
Q psy13086 18 KVEFVDVGCGKL-----YLP--MFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFL---YPDPHFKR------CK 76 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~--~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~---f~d~~f~~------~h 76 (169)
+.+|||||||+| +++ ..|+.+++|+|+|+.|++.|++++. ..++.+... .+.+.++. .|
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 578999999999 344 3588999999999999999998864 122222111 11122221 12
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+...-....++++++++|||||.|++.+
T Consensus 137 ~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 137 FLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2111012579999999999999999975
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=4.8e-13 Score=99.86 Aligned_cols=87 Identities=21% Similarity=0.334 Sum_probs=59.5
Q ss_pred CCCeEEEEcCccc-----cc-CcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE--------e--CCCCccccc----
Q psy13086 17 KKVEFVDVGCGKL-----YL-PMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF--------L--YPDPHFKRC---- 75 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la-~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~--------~--f~d~~f~~~---- 75 (169)
++.+|||+|||+| ++ ..+|..+++|+|+|+.|++.|++++. ..++.+.+ . ++ ..||..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 4789999999999 66 45788999999999999999998654 11221111 0 11 123321
Q ss_pred --chhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 76 --KYKWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 76 --h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
|+... ...+++++.++||+||.+++.+..
T Consensus 82 ~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 11111 257999999999999999987644
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.42 E-value=5.6e-13 Score=106.58 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCeEEEEcCccc-----ccCc--CCCCcEEEEeCCHHHHHHHHHHhcc-----ccceEEEe---CCCCcccc------cc
Q psy13086 18 KVEFVDVGCGKL-----YLPM--FPSTLILGLEIRVKVSDYVIDEWSL-----YLKKMFFL---YPDPHFKR------CK 76 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~--~p~~~v~GiDis~~~l~~a~~~~~~-----~~d~v~~~---f~d~~f~~------~h 76 (169)
+.+|||||||+| +++. .|+.+++|+|+|+.|++.|++++.. .+..+... ++.+.++. .|
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 578999999999 4444 4789999999999999999987641 11111100 11111221 12
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+...-....++++++|+|||||.|++..
T Consensus 134 ~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 134 FLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2111012579999999999999999874
No 26
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.42 E-value=2.3e-12 Score=99.42 Aligned_cols=105 Identities=11% Similarity=0.030 Sum_probs=67.1
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC------CCcccccchhh-hccc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP------DPHFKRCKYKW-RIIN 83 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~------d~~f~~~h~~~-~~~~ 83 (169)
+..+|||||||+| +++.+|+.+++|+|+|+.|++.|++++. ..++.+.+... ...||...... .-..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~~~ 110 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNL 110 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCccCH
Confidence 3678999999999 5667788999999999999999988764 11222221111 11233211000 0012
Q ss_pred HHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
..+++.+.++|+|||.+++......-.......+.+++
T Consensus 111 ~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 111 TAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCG 148 (187)
T ss_pred HHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCC
Confidence 56899999999999999886533333344555565554
No 27
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.41 E-value=1.1e-12 Score=102.03 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=59.9
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC-------CCcccccchhhhcccH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP-------DPHFKRCKYKWRIINQ 84 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~-------d~~f~~~h~~~~~~~~ 84 (169)
+.+|||||||+| ++...|..+|+|+|+|+.|++.|++++. ..++.+.+... +..||..-...-...+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~~~~~ 125 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAVASLS 125 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccccCHH
Confidence 678999999999 5566788999999999999999998765 22222221111 1123321110000126
Q ss_pred HHHHHHHHhccCCcEEEEEe
Q psy13086 85 NLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~~ 104 (169)
.++++++++|||||.+++..
T Consensus 126 ~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 126 DLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEe
Confidence 89999999999999999875
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.41 E-value=1.3e-12 Score=103.52 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=59.5
Q ss_pred CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cccceE--------EEeCCCCcccccc------
Q psy13086 18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYLKKM--------FFLYPDPHFKRCK------ 76 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~d~v--------~~~f~d~~f~~~h------ 76 (169)
+.+|||||||+| +++.. |+.+++|+|+|+.|++.|++++. ..++.+ .+.+++..||...
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccc
Confidence 679999999999 55554 66799999999999999988764 111111 1223333444321
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
+.. ....+++++.++|||||.+++.+.
T Consensus 126 ~~~--~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 126 NVP--DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cCC--CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 111 125789999999999999988753
No 29
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.40 E-value=1.2e-12 Score=105.21 Aligned_cols=88 Identities=17% Similarity=0.128 Sum_probs=60.3
Q ss_pred CCeEEEEcCccc-ccCc--CCCCcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCccccc------chhhhcccH
Q psy13086 18 KVEFVDVGCGKL-YLPM--FPSTLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRC------KYKWRIINQ 84 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~~--~p~~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~------h~~~~~~~~ 84 (169)
..+|||||||+| ++.. ....+++|+|+|+.|++.|+++.. ...|...+.+++..||.. |+.. ...
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~--d~~ 120 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCG--NLS 120 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcC--CHH
Confidence 578999999999 2221 135799999999999999988753 111222234444445432 2211 136
Q ss_pred HHHHHHHHhccCCcEEEEEeCCh
Q psy13086 85 NLLSEYAYVLSEGGIVYTITDVK 107 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~~d~~ 107 (169)
.+++++.++|||||.+++++...
T Consensus 121 ~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 121 TALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCC
Confidence 79999999999999999987543
No 30
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.39 E-value=2.2e-12 Score=91.90 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=58.4
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC---------CCcccccchhhh-c
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP---------DPHFKRCKYKWR-I 81 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~---------d~~f~~~h~~~~-~ 81 (169)
+.+|||||||+| +++.+|..+++|+|+|+.+++.|++++. ..++.+.+... .+.||..-.... -
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 568999999999 6667788899999999999999987764 11222221101 112332110000 0
Q ss_pred ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
...+++++++++|||||.|++..
T Consensus 100 ~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hHHHHHHHHHHHcCCCCEEEEEe
Confidence 12579999999999999998853
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.37 E-value=8.5e-12 Score=97.00 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=66.2
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCC---------Ccccccchhhhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPD---------PHFKRCKYKWRI 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d---------~~f~~~h~~~~~ 81 (169)
++.+|||+|||+| ++...|+..++|+|+|+.|++.|++++. ..++.+.+...| +.++........
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~ 119 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGGR 119 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECCc
Confidence 4678999999999 4555677899999999999999998765 122222211110 111111110000
Q ss_pred ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~ 119 (169)
....+++++.++|+|||.+++.+...+......+.+..
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 157 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQ 157 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHh
Confidence 12689999999999999999987655443334444443
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=5.7e-12 Score=101.79 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc-cceEEE---------eCCCCccccc------
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY-LKKMFF---------LYPDPHFKRC------ 75 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~-~d~v~~---------~f~d~~f~~~------ 75 (169)
+.+|||||||+| ++.. ..+|+|+|+|+.|++.|++++. .. .+.+.+ .+++..||..
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 578999999999 4443 5799999999999999988764 11 111111 1223344432
Q ss_pred chhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086 76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDVK 107 (169)
Q Consensus 76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~ 107 (169)
|+.. ....+++++.++|||||.+++...+.
T Consensus 123 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 123 EWVA--DPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HhhC--CHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 1111 12578999999999999998875443
No 33
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=4.1e-12 Score=108.35 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=66.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD 69 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d 69 (169)
..+|||+|||+| +++++|+.+|+|+|+|+.|++.|++++. .++|.|. .+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIl---sN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVL---CN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEE---EC
Confidence 358999999999 6778899999999999999999998753 0122222 22
Q ss_pred CcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHH
Q psy13086 70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHF 117 (169)
Q Consensus 70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~ 117 (169)
|-|...+....-+..++++++.++|+|||.|+++... -.|...+.+.+
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f 354 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF 354 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence 3222211111112357899999999999999998643 34665555543
No 34
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.34 E-value=8e-12 Score=100.91 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=70.7
Q ss_pred CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCCCCcccccchhh-hcccHHHHHH
Q psy13086 17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYPDPHFKRCKYKW-RIINQNLLSE 89 (169)
Q Consensus 17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~d~~f~~~h~~~-~~~~~~~l~~ 89 (169)
++.+|||||||+| .+.......++|+|+|+.|++.|++++. ..+ +.+.+...+..||.....- .-....++++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~~~ 198 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLLELAPD 198 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHHHH
Confidence 4679999999999 2222333469999999999999998876 333 3344433333344321100 0012568899
Q ss_pred HHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086 90 YAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE 125 (169)
Q Consensus 90 ~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~ 125 (169)
+.++|||||.++++.........+...+..++ |..
T Consensus 199 ~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~G-f~~ 233 (250)
T PRK00517 199 LARLLKPGGRLILSGILEEQADEVLEAYEEAG-FTL 233 (250)
T ss_pred HHHhcCCCcEEEEEECcHhhHHHHHHHHHHCC-CEE
Confidence 99999999999998665555555666666553 544
No 35
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.34 E-value=2e-12 Score=98.65 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=60.1
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPH 71 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~ 71 (169)
+..+|||+|||+| +++..|+.+++++|+|+.+++.|++++. ..+|.|.++-|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP--- 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPP--- 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccc---
Confidence 3678999999999 7778888899999999999999988765 23333333211
Q ss_pred ccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+............+++++..+.|||||.|+++.
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 111111001124689999999999999998764
No 36
>PRK05785 hypothetical protein; Provisional
Probab=99.34 E-value=5.5e-12 Score=100.62 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCCCccccc------chhhhcccHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDPHFKRC------KYKWRIINQN 85 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~~f~~~------h~~~~~~~~~ 85 (169)
+.+||||||||| ++..+ +.+|+|+|+|++|++.|+++.. ...|...++|++..||.. |+.. ..+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~--d~~~ 128 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASD--NIEK 128 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccC--CHHH
Confidence 578999999999 44444 5699999999999999987632 111222234555555531 2111 1368
Q ss_pred HHHHHHHhccCCc
Q psy13086 86 LLSEYAYVLSEGG 98 (169)
Q Consensus 86 ~l~~~~rvLkpGG 98 (169)
+++|++|+|||.+
T Consensus 129 ~l~e~~RvLkp~~ 141 (226)
T PRK05785 129 VIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHhcCce
Confidence 9999999999953
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.33 E-value=3.6e-12 Score=100.41 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE-----------EEeCCCCcccccchh
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM-----------FFLYPDPHFKRCKYK 78 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v-----------~~~f~d~~f~~~h~~ 78 (169)
+....|.|+|||+| |++++|++.++|||-|+.|++.|+++++ .++... .+.|++-. .||.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAv---lqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAV---LQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhh---hhhc
Confidence 44678999999999 9999999999999999999999998876 222111 11222211 1222
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEeCC---hHHHHHHHHHHhcCC
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTITDV---KDLHDWIVSHFTEHP 121 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~---~~~~~~~~~~~~~~~ 121 (169)
. .+..+|..+...|.|||.|.++.+. +..+.-|++...+.|
T Consensus 106 p--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p 149 (257)
T COG4106 106 P--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAP 149 (257)
T ss_pred c--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCc
Confidence 1 2478999999999999999998632 334555776665444
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.33 E-value=6.8e-12 Score=97.81 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=53.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc--eEE-----EeCCCCcccc------cchh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK--KMF-----FLYPDPHFKR------CKYK 78 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d--~v~-----~~f~d~~f~~------~h~~ 78 (169)
+.+|||||||+| ++++ +.+|+|+|+|+.|++.|++++. ..++ ... ..+ ++.||. .|+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMFL 107 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEecccccC
Confidence 568999999999 4443 5799999999999999876543 1111 100 111 123332 1211
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
..-....++++++++|||||.+++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1101257999999999999997665
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.32 E-value=1.1e-11 Score=95.88 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=59.1
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe------C-CCCcccccchhhhcccH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL------Y-PDPHFKRCKYKWRIINQ 84 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~------f-~d~~f~~~h~~~~~~~~ 84 (169)
+.+|||||||+| ++...|+.+|+|+|+|+.|++.|++++. ..++.+.+. + .+..||..-...-...+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~~ 122 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLN 122 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCHH
Confidence 578999999999 5666788899999999999999887654 122222211 1 12233321111000125
Q ss_pred HHHHHHHHhccCCcEEEEEeC
Q psy13086 85 NLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~~d 105 (169)
.+++.+.++|+|||.+++...
T Consensus 123 ~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 123 VLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred HHHHHHHHhcCCCCEEEEEcC
Confidence 788999999999999998753
No 40
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=6e-12 Score=103.14 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCC--Ccccccc------
Q psy13086 15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPD--PHFKRCK------ 76 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d--~~f~~~h------ 76 (169)
++++.+|||||||.| +|+++ +++|+|+++|+++.+.|++++. ..++.....+.+ ..||..-
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfE 148 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFE 148 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHH
Confidence 667899999999999 66777 8999999999999999999876 233333323322 2355421
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
|.-.-..+.+|+.++++|+|||.+.+.+
T Consensus 149 hvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 149 HVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred HhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 1111013789999999999999998875
No 41
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=9.5e-12 Score=97.12 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=54.6
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc---cceEEE-----eCCCCccccc------ch
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY---LKKMFF-----LYPDPHFKRC------KY 77 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~---~d~v~~-----~f~d~~f~~~------h~ 77 (169)
+.+|||+|||+| ++++ ..+|+|+|+|+.|++.|++++. .. +..+.. .++ ..||.. |+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 578999999999 4443 5699999999999999987654 11 111111 111 224421 22
Q ss_pred hhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 78 KWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 78 ~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
...-....++++++++|||||.+++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11111368999999999999997654
No 42
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.30 E-value=1.3e-11 Score=97.23 Aligned_cols=87 Identities=24% Similarity=0.284 Sum_probs=61.3
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceE-----EEeCCCCccccc------chhhhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKM-----FFLYPDPHFKRC------KYKWRI 81 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v-----~~~f~d~~f~~~------h~~~~~ 81 (169)
..+|||||||+| ++...|...++|+|+|+.|++.++++....+..+ ...+++..||.. |+..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-- 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-- 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc--
Confidence 468999999999 6677788899999999999999987653111111 122334444431 1111
Q ss_pred ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
....+++++.++|||||.+++.+..
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 1357999999999999999998643
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.30 E-value=6.3e-12 Score=109.72 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=60.4
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc--------ccceEEEeCCCCcccccchhhhc--
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL--------YLKKMFFLYPDPHFKRCKYKWRI-- 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~--------~~d~v~~~f~d~~f~~~h~~~~~-- 81 (169)
++.+|||||||+| ++..+ +.+++|+|+|+.|++.|+++..+ ..|.....+++..||.......+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 3678999999999 45444 67999999999999999876541 11111223445456542211111
Q ss_pred --ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 --INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 --~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....++++++|+|||||.+++.+
T Consensus 345 ~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 345 IQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 13689999999999999999875
No 44
>PRK04266 fibrillarin; Provisional
Probab=99.30 E-value=1.1e-11 Score=98.98 Aligned_cols=87 Identities=7% Similarity=0.049 Sum_probs=53.2
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCC--------CCccccc-chhhh
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYP--------DPHFKRC-KYKWR 80 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~--------d~~f~~~-h~~~~ 80 (169)
++.+|||+|||+| ++...+...|+|+|+|+.|++.+.+++. ..+..+.-... +..+|.. |....
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~ 151 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQ 151 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCC
Confidence 3679999999999 6666666689999999999986654432 11111100000 0112221 10000
Q ss_pred c-ccHHHHHHHHHhccCCcEEEEE
Q psy13086 81 I-INQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 81 ~-~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
- ....++++++|+|||||.++++
T Consensus 152 p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 152 PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 0 0124689999999999999994
No 45
>PRK06922 hypothetical protein; Provisional
Probab=99.29 E-value=5.2e-12 Score=113.34 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=61.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc---cc-----ceEEEe--CCCCccccc------c
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL---YL-----KKMFFL--YPDPHFKRC------K 76 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~---~~-----d~v~~~--f~d~~f~~~------h 76 (169)
+.+|||||||+| ++..+|+.+++|+|+|+.|++.|++++.. .+ |...++ |++..||.. |
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 578999999999 66778999999999999999999876531 11 211122 444445532 1
Q ss_pred hhh-----------hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKW-----------RIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~-----------~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+.. .-....++++++++|||||.+++..
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 110 0013679999999999999999974
No 46
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.28 E-value=3.1e-11 Score=97.36 Aligned_cols=100 Identities=19% Similarity=0.289 Sum_probs=73.4
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLY 67 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f 67 (169)
+..+|||+|||+| +|++.+.+.++|||+.+.|.+.|++++. .++|.|..+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N- 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN- 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC-
Confidence 3688999999999 7888888999999999999999987653 446666542
Q ss_pred CCCcccc------------cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086 68 PDPHFKR------------CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119 (169)
Q Consensus 68 ~d~~f~~------------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~ 119 (169)
.|.|+. .+|.-....+++++...++|||||.++++...+...+ ..+.+..
T Consensus 123 -PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~e-i~~~l~~ 184 (248)
T COG4123 123 -PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAE-IIELLKS 184 (248)
T ss_pred -CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHH-HHHHHHh
Confidence 223321 1222233358899999999999999999987666655 3344444
No 47
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.28 E-value=2.1e-11 Score=102.91 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------cccceEEEeCCCCcccc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------LYLKKMFFLYPDPHFKR 74 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------~~~d~v~~~f~d~~f~~ 74 (169)
..+|||+|||+| +++++|..+++|+|+|+.|++.|++++. +.+|.|.. +|-|..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvs---NPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIIS---NPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEE---CCCccC
Confidence 357999999999 6677888899999999999999987654 22333332 221210
Q ss_pred -cchhhhcccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHH
Q psy13086 75 -CKYKWRIINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHF 117 (169)
Q Consensus 75 -~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~ 117 (169)
.... .-....+++++.++|||||.|+++... ..|..++.+.+
T Consensus 274 g~~~~-~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~F 317 (342)
T PRK09489 274 GIQTS-LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETF 317 (342)
T ss_pred Ccccc-HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHc
Confidence 0000 001368999999999999999998643 34655554444
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.28 E-value=7.6e-12 Score=98.68 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=58.4
Q ss_pred eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEE-----eCCCCcccccc------hh
Q psy13086 20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFF-----LYPDPHFKRCK------YK 78 (169)
Q Consensus 20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~-----~f~d~~f~~~h------~~ 78 (169)
+|||||||+| +++.+|+.+++|+|+|+.+++.|++++. ..+..+.. .++ ..||... +.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 6999999999 6667788899999999999999998764 11111111 112 2344322 11
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.. ...++++++++|||||.+++.+
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEE
Confidence 11 2679999999999999999875
No 49
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.28 E-value=3.6e-12 Score=88.87 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=46.4
Q ss_pred EEEEcCccc-----ccCcC---CCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086 21 FVDVGCGKL-----YLPMF---PSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF 72 (169)
Q Consensus 21 iLDiGCG~G-----la~~~---p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f 72 (169)
|||+|||+| ++..+ |..+++|+|+|+.|++.|+++.. +++|.|......
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~--- 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLS--- 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTG---
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCc---
Confidence 799999999 44443 55899999999999999988752 344444332110
Q ss_pred cccchhhhcccHHHHHHHHHhccCCc
Q psy13086 73 KRCKYKWRIINQNLLSEYAYVLSEGG 98 (169)
Q Consensus 73 ~~~h~~~~~~~~~~l~~~~rvLkpGG 98 (169)
.++...-....++++++++|||||
T Consensus 78 --~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 --LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 111111113689999999999998
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.27 E-value=3e-11 Score=92.55 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=63.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------cccceEEEeCCCCccc-
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------LYLKKMFFLYPDPHFK- 73 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------~~~d~v~~~f~d~~f~- 73 (169)
..+|||+|||+| ++...+ +++|+|+|+.|++.|++++. .++|.|....|-....
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED 97 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence 468999999999 444443 89999999999999988753 3455544321110000
Q ss_pred --cc-chh---------hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 74 --RC-KYK---------WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 74 --~~-h~~---------~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
.. ++. .......+++++.++|||||.+++......-...+...+.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~g 157 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERG 157 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCC
Confidence 00 000 0111367899999999999999987644331233445555443
No 51
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.26 E-value=1.2e-11 Score=101.46 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEE---eCC--CCccccc------c
Q psy13086 15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFF---LYP--DPHFKRC------K 76 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~---~f~--d~~f~~~------h 76 (169)
+.++.+|||||||.| +|+++ +++|+||.+|++..+.|++++. +--+.+.+ .|. ++.||.. .
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~E 138 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFE 138 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGG
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechh
Confidence 345789999999999 66776 7899999999999999998876 21122222 221 1234431 1
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
|...-..+.+++++.++|||||++++.+
T Consensus 139 hvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 139 HVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp GTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred hcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 1111113689999999999999998864
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.26 E-value=3.7e-11 Score=99.03 Aligned_cols=107 Identities=10% Similarity=0.166 Sum_probs=68.2
Q ss_pred CCeEEEEcCccc-c---cCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEEE------eCCCCcccccchhh-hcccH
Q psy13086 18 KVEFVDVGCGKL-Y---LPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMFF------LYPDPHFKRCKYKW-RIINQ 84 (169)
Q Consensus 18 ~~~iLDiGCG~G-l---a~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~------~f~d~~f~~~h~~~-~~~~~ 84 (169)
+.+|||||||+| + +......+++|+|+|+.|++.|++++. ..+. .+.. .+.+..||.....- .-...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~l~ 239 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEVIK 239 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHHHH
Confidence 579999999999 2 223344689999999999999998765 1111 1111 11222344321100 00124
Q ss_pred HHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086 85 NLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC 126 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~ 126 (169)
.++.++.++|||||.++++.....-...+.+.+..+ |+..
T Consensus 240 ~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~--f~~~ 279 (288)
T TIGR00406 240 ELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG--FTVV 279 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc--Ccee
Confidence 689999999999999999876655555566666544 5543
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.26 E-value=3.1e-11 Score=98.18 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc-cccceEE--------EeCCCCcccccchhhh
Q psy13086 16 EKKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS-LYLKKMF--------FLYPDPHFKRCKYKWR 80 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~--------~~f~d~~f~~~h~~~~ 80 (169)
.++.+|||||||+| ++.. .+..+++|+|+|+.|++.|+++.. ..++.+. +.+++..||.......
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 35789999999999 3333 355689999999999999998754 1111111 2334444543221100
Q ss_pred ---c-ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 81 ---I-INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 81 ---~-~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
. ....+++++.|+|||||+|++.+
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 0 12579999999999999999864
No 54
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.25 E-value=7.9e-11 Score=91.82 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc-cc-cceEEE---eCC------CCcccccch-h
Q psy13086 17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS-LY-LKKMFF---LYP------DPHFKRCKY-K 78 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~-~~-~d~v~~---~f~------d~~f~~~h~-~ 78 (169)
++.+|||+|||+| ++.. .+..+++|+|+++.|++.|++++. .. .+.+.+ ... ++.||.... .
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 4678999999999 3333 356799999999999999988765 11 122221 111 122332111 0
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
.......+++++.++|||||++++.+...+........+.+++
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g 162 (198)
T PRK00377 120 GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIG 162 (198)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcC
Confidence 0001367999999999999999886544444455566665554
No 55
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=2.5e-11 Score=102.24 Aligned_cols=85 Identities=20% Similarity=0.106 Sum_probs=58.6
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE-----EEeCCCCccccc------chhhh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM-----FFLYPDPHFKRC------KYKWR 80 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v-----~~~f~d~~f~~~------h~~~~ 80 (169)
+.+|||||||+| +++..+..+++|+|+|+.|++.|+++.. ..+..+ .+.+++..||.. |+..
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~- 192 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP- 192 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC-
Confidence 568999999999 5556677899999999999999987643 111111 122333334421 1111
Q ss_pred cccHHHHHHHHHhccCCcEEEEEe
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....++++++|+|||||.+++..
T Consensus 193 -d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 193 -DPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred -CHHHHHHHHHHhcCCCcEEEEEE
Confidence 12579999999999999998864
No 56
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.25 E-value=2.7e-11 Score=101.12 Aligned_cols=84 Identities=17% Similarity=0.041 Sum_probs=52.3
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH--H-hc--cccceE-----EEeCCCCccccc------
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID--E-WS--LYLKKM-----FFLYPDPHFKRC------ 75 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~--~-~~--~~~d~v-----~~~f~d~~f~~~------ 75 (169)
++.+|||||||+| ++...+ ..|+|||+|+.|+..++. + +. ..+..+ .+.. ...||..
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL 198 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVL 198 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchh
Confidence 3679999999999 334433 379999999999876532 1 11 000000 0111 1234421
Q ss_pred chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+|... ...+|++++++|||||.|++.+
T Consensus 199 ~H~~d--p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 199 YHRKS--PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred hccCC--HHHHHHHHHHhcCCCCEEEEEE
Confidence 22211 2579999999999999999875
No 57
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.24 E-value=6.8e-11 Score=94.37 Aligned_cols=106 Identities=10% Similarity=0.087 Sum_probs=66.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF 72 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f 72 (169)
..+|||+|||+| ++..+|..+++|+|+|+.|++.|++++. .++|.|..+.|--..
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCch
Confidence 458999999999 6677788999999999999999987643 234444332110000
Q ss_pred cccch----hh------h--------cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086 73 KRCKY----KW------R--------IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE 125 (169)
Q Consensus 73 ~~~h~----~~------~--------~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~ 125 (169)
...+. .+ . .....+++++.++|+|||.+++....... ..+.+.+..++ |..
T Consensus 168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~-~~~~~~l~~~g-f~~ 236 (251)
T TIGR03534 168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQG-EAVRALFEAAG-FAD 236 (251)
T ss_pred hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHH-HHHHHHHHhCC-CCc
Confidence 00000 00 0 00146889999999999999997644332 33455555443 543
No 58
>KOG4300|consensus
Probab=99.23 E-value=5.8e-11 Score=93.12 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=55.9
Q ss_pred CeEEEEcCccc-ccCcC---CCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCCCc
Q psy13086 19 VEFVDVGCGKL-YLPMF---PSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPDPH 71 (169)
Q Consensus 19 ~~iLDiGCG~G-la~~~---p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d~~ 71 (169)
..+|||||||| --+.+ |..+|+++|.+++|-+.|.+++. +++|.|.-.|--
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL-- 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL-- 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE--
Confidence 45799999999 33333 67899999999999999876543 344443211100
Q ss_pred ccccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086 72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK 107 (169)
Q Consensus 72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~ 107 (169)
..+. ...+.|+++.|+|||||++++.....
T Consensus 156 --CSve----~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 156 --CSVE----DPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred --eccC----CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 0000 02579999999999999999987654
No 59
>PRK08317 hypothetical protein; Provisional
Probab=99.23 E-value=3.8e-11 Score=94.28 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=60.1
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc---ccc-----ceEEEeCCCCcccccchhhhc-
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS---LYL-----KKMFFLYPDPHFKRCKYKWRI- 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~---~~~-----d~v~~~f~d~~f~~~h~~~~~- 81 (169)
++.+|||+|||+| ++..+ |..+++|+|+|+.+++.|+++.. ..+ |.-...+++..||..+....+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQ 98 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhh
Confidence 3678999999999 55555 67899999999999999988732 111 111122334445532211100
Q ss_pred ---ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 ---INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ---~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....++++++++|||||.+++..
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 13679999999999999998864
No 60
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.22 E-value=1.2e-10 Score=95.82 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=68.1
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPH 71 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~ 71 (169)
..+|||+|||+| ++...|+.+++|+|+|+.|++.|++++. .++|.|..+- |+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NP--Py 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNP--PY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECC--CC
Confidence 468999999999 6677788999999999999999988754 1233333211 11
Q ss_pred ccc---------cchhhh----------cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086 72 FKR---------CKYKWR----------IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC 126 (169)
Q Consensus 72 f~~---------~h~~~~----------~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~ 126 (169)
... .++... -....+++++.++|+|||.+++...... ....+.+..++ |.|.
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~--~~v~~~~~~~~-~~~~ 270 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM--EALEEAYPDVP-FTWL 270 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHHhCC-Ccee
Confidence 110 000000 0125689999999999999999776433 34555665543 5664
No 61
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.22 E-value=2.7e-11 Score=89.84 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=74.9
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------cccceEEEeCCCCcccccchh
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------LYLKKMFFLYPDPHFKRCKYK 78 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------~~~d~v~~~f~d~~f~~~h~~ 78 (169)
+..+|||||||+| ++.. ..+++|+|+|+.|++. .+.. +++|.|.....- ||.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l------~~~ 91 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICNDVL------EHL 91 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEESSG------GGS
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhHHHH------hhc
Confidence 3689999999999 4333 3499999999999987 1111 566666554322 222
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCe
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEK 158 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i 158 (169)
.+ ...++++++++|||||.+++.+...... ....+.... +.... . -+....+...++..+.+.|.++
T Consensus 92 ~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~-~~~~~------~--~~~~~~~~~~~~~ll~~~G~~i 158 (161)
T PF13489_consen 92 PD--PEEFLKELSRLLKPGGYLVISDPNRDDP--SPRSFLKWR-YDRPY------G--GHVHFFSPDELRQLLEQAGFEI 158 (161)
T ss_dssp SH--HHHHHHHHHHCEEEEEEEEEEEEBTTSH--HHHHHHHCC-GTCHH------T--TTTEEBBHHHHHHHHHHTTEEE
T ss_pred cc--HHHHHHHHHHhcCCCCEEEEEEcCCcch--hhhHHHhcC-CcCcc------C--ceeccCCHHHHHHHHHHCCCEE
Confidence 21 3689999999999999999998654211 111112111 11100 0 0123466778888888888776
Q ss_pred E
Q psy13086 159 F 159 (169)
Q Consensus 159 ~ 159 (169)
-
T Consensus 159 v 159 (161)
T PF13489_consen 159 V 159 (161)
T ss_dssp E
T ss_pred E
Confidence 3
No 62
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.20 E-value=5.8e-11 Score=101.60 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=56.9
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc-ccceEEEeCC--CCccccc------chhhhcc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL-YLKKMFFLYP--DPHFKRC------KYKWRII 82 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~-~~d~v~~~f~--d~~f~~~------h~~~~~~ 82 (169)
++.+|||||||+| +++. .+.+|+|+|+|+.|++.|++++.+ .++.....+. +..||.. ++...-.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~~~ 245 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGPKN 245 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCChHH
Confidence 3679999999999 4433 367999999999999999987641 1111111111 1233321 1110001
Q ss_pred cHHHHHHHHHhccCCcEEEEEe
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.+.+++++.++|||||.+++.+
T Consensus 246 ~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 246 YRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred HHHHHHHHHHHcCCCcEEEEEE
Confidence 2578999999999999999875
No 63
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.20 E-value=5.7e-11 Score=97.74 Aligned_cols=84 Identities=11% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc--ceEEEeC----CCCccccc------chhh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL--KKMFFLY----PDPHFKRC------KYKW 79 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~--d~v~~~f----~d~~f~~~------h~~~ 79 (169)
+.+|||||||+| ++. .+.+|+|+|+|+.|++.|++++. ..+ ..+.... .+..||.. |+..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 458999999999 443 35799999999999999987654 111 1111000 01223321 1111
Q ss_pred hcccHHHHHHHHHhccCCcEEEEE
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
.-..+.+++++.++|+|||.+++.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 001257999999999999997665
No 64
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=6.6e-11 Score=92.90 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=56.1
Q ss_pred CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEe---C-----CCCcccccchhhh
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLK-KMFFL---Y-----PDPHFKRCKYKWR 80 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~---f-----~d~~f~~~h~~~~ 80 (169)
++.+|||||||+| +++..+ ..+|+|+|+++.|++.|++++. ..++ .+.+. . .+..||......
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~- 150 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA- 150 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc-
Confidence 3579999999999 454443 5699999999999999998875 1121 12211 1 112344321110
Q ss_pred cccHHHHHHHHHhccCCcEEEEEe
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....+.+++.++|+|||++++..
T Consensus 151 -~~~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 -AASTIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred -CcchhhHHHHHhcCcCcEEEEEE
Confidence 12356678999999999998853
No 65
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=9.2e-11 Score=96.64 Aligned_cols=101 Identities=14% Similarity=0.262 Sum_probs=70.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccce--EE-------------EeCCCCcccccc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKK--MF-------------FLYPDPHFKRCK 76 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~--v~-------------~~f~d~~f~~~h 76 (169)
..+|||+|||.| +++.+|+.+++-+|+|..+++.|++++. +.++. +. +..++|-|..-+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~ 238 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGK 238 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCc
Confidence 358999999999 8899999999999999999999999876 33332 11 112333332211
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEeC-ChHHHHHHHHHHh
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTITD-VKDLHDWIVSHFT 118 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d-~~~~~~~~~~~~~ 118 (169)
....-+..+++++..+.|++||.|+|+.. ...|..-|.+.|.
T Consensus 239 ~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 239 AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 11111235899999999999999999875 3456665655554
No 66
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.18 E-value=6.9e-11 Score=83.79 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=56.5
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeCCC
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLYPD 69 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f~d 69 (169)
.+|||+|||+| +++.. ..+++|+|+++..++.|+.+++ .++|.|..+-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np-- 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP-- 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE----
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC--
Confidence 57999999999 34444 6899999999999999987643 3444444322
Q ss_pred Ccccccchh--hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 70 PHFKRCKYK--WRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 70 ~~f~~~h~~--~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
|+....+.. ..-....+++++.++|||||.+++.+
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 222111100 01124689999999999999999876
No 67
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.18 E-value=5.8e-11 Score=93.43 Aligned_cols=84 Identities=12% Similarity=0.020 Sum_probs=55.0
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCccccc------chhhhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRC------KYKWRI 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~------h~~~~~ 81 (169)
+..+|||||||+| ++...|..+++|||+|+.|++.|+++++ ...|... .+++..||.. +|...-
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHH
Confidence 3578999999999 5555678899999999999999998754 1111111 3444455531 221111
Q ss_pred ccHHHHHHHHHhccCCcEEEEE
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
....+++++.|++ ++.+++.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEE
Confidence 1357888898887 4566554
No 68
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=1.5e-10 Score=91.37 Aligned_cols=90 Identities=11% Similarity=0.006 Sum_probs=56.3
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCH-----------------HHHHHHHHHhc-cccceEEEeCCCCcc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRV-----------------KVSDYVIDEWS-LYLKKMFFLYPDPHF 72 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~-----------------~~l~~a~~~~~-~~~d~v~~~f~d~~f 72 (169)
++.+||||||||| ++++. +...|+|||+++ .+++.+++.+. .++|.|.......+.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~ 130 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMS 130 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccC
Confidence 3678999999999 44554 457999999995 22333333333 578877653321111
Q ss_pred cc---cchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 73 KR---CKYKWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 73 ~~---~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
.. .+.........+++++.++|||||.|++....
T Consensus 131 g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 131 GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 10 00000001257999999999999999997543
No 69
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.16 E-value=1.1e-10 Score=97.73 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH--Hhc---cccceE-----EEeCCCCcccc------cc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID--EWS---LYLKKM-----FFLYPDPHFKR------CK 76 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~--~~~---~~~d~v-----~~~f~d~~f~~------~h 76 (169)
+.+|||||||+| ++...+. .|+|||+|+.|+..++. +.. ..+..+ .+.+ +..||. .|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 679999999999 4455443 69999999999876532 211 111111 1122 233443 22
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
|... ...++++++++|||||.+++.+
T Consensus 201 H~~d--p~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 201 HRRS--PLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ccCC--HHHHHHHHHHhcCCCcEEEEEE
Confidence 2221 3679999999999999999864
No 70
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.16 E-value=1.2e-10 Score=96.57 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhccc-----cceEEEeCCC------Ccc---c----
Q psy13086 18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWSLY-----LKKMFFLYPD------PHF---K---- 73 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~~~-----~d~v~~~f~d------~~f---~---- 73 (169)
+.+|||+||||| ++...+ ..+++|||+|+.|++.|++++... +..+.-.+.+ +.. .
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 468999999999 555555 579999999999999998875411 1111111111 110 0
Q ss_pred ---ccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 74 ---RCKYKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 74 ---~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
..++...-....+|++++++|+|||.|+|..|
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 00110111125699999999999999998654
No 71
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.15 E-value=1.1e-10 Score=92.01 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC--------CCcccccchhhhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP--------DPHFKRCKYKWRI 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~--------d~~f~~~h~~~~~ 81 (169)
++.+|||||||+| ++...+ +.+|+|+|+++.|++.|++++. ..++.+.+... ...||......
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~-- 154 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA-- 154 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC--
Confidence 4689999999999 555543 4679999999999999998865 22232222111 11233221110
Q ss_pred ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
......+.+.+.|||||++++..
T Consensus 155 ~~~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 155 AGPKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccccHHHHHhcCcCcEEEEEE
Confidence 12346677889999999998864
No 72
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.14 E-value=9.3e-10 Score=85.54 Aligned_cols=143 Identities=15% Similarity=0.023 Sum_probs=88.8
Q ss_pred CCCeEEEEcCccc--c--cCcCCCCcEEEEeCCHHHHHHHHHHh-c---cccceEEEeCCCCcccccchhhhc----ccH
Q psy13086 17 KKVEFVDVGCGKL--Y--LPMFPSTLILGLEIRVKVSDYVIDEW-S---LYLKKMFFLYPDPHFKRCKYKWRI----INQ 84 (169)
Q Consensus 17 ~~~~iLDiGCG~G--l--a~~~p~~~v~GiDis~~~l~~a~~~~-~---~~~d~v~~~f~d~~f~~~h~~~~~----~~~ 84 (169)
++.+|||+|||.| | .+...++...|||+++..+..|.+|- + +.+|.-.-.|+|.+||-.-....+ -..
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~ 92 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPD 92 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHH
Confidence 4799999999999 2 23346789999999999888887652 1 334433336889888853221111 025
Q ss_pred HHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCcccccc-CCCCCCCCCCCCHHHHHHHHcCCCeEEEEE
Q psy13086 85 NLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKR-TDPVVDKLYQSTEEGQKVTRNKGEKFCAVF 163 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~ 163 (169)
.+|+|+.|+ |...+++.++-.+...-.. +...+.+.....-+..| +.| ....-+..+||......|..|-+-++
T Consensus 93 ~vL~EmlRV---gr~~IVsFPNFg~W~~R~~-l~~~GrmPvt~~lPy~WYdTP-Nih~~Ti~DFe~lc~~~~i~I~~~~~ 167 (193)
T PF07021_consen 93 EVLEEMLRV---GRRAIVSFPNFGHWRNRLQ-LLLRGRMPVTKALPYEWYDTP-NIHLCTIKDFEDLCRELGIRIEERVF 167 (193)
T ss_pred HHHHHHHHh---cCeEEEEecChHHHHHHHH-HHhcCCCCCCCCCCCcccCCC-CcccccHHHHHHHHHHCCCEEEEEEE
Confidence 677777555 6677777766666553333 33233222221112223 333 23567788999999999999965554
Q ss_pred E
Q psy13086 164 R 164 (169)
Q Consensus 164 ~ 164 (169)
-
T Consensus 168 ~ 168 (193)
T PF07021_consen 168 L 168 (193)
T ss_pred E
Confidence 3
No 73
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.13 E-value=5.4e-11 Score=97.04 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=55.4
Q ss_pred CCeEEEEcCccc---------ccCcCC-----CCcEEEEeCCHHHHHHHHHHhc--------------------------
Q psy13086 18 KVEFVDVGCGKL---------YLPMFP-----STLILGLEIRVKVSDYVIDEWS-------------------------- 57 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~~~p-----~~~v~GiDis~~~l~~a~~~~~-------------------------- 57 (169)
..+|||+||||| +++..+ +.+|+|+|+|+.|++.|++.+-
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 468999999999 223333 4689999999999999986431
Q ss_pred ----------cccceEEEeCCCCcccccchhh------hcccHHHHHHHHHhccCCcEEEEE
Q psy13086 58 ----------LYLKKMFFLYPDPHFKRCKYKW------RIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 58 ----------~~~d~v~~~f~d~~f~~~h~~~------~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
...|.....+++..||...... .-....++++++++|+|||.|++.
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0001111112233455322111 111247999999999999999985
No 74
>KOG1541|consensus
Probab=99.13 E-value=2.4e-10 Score=90.41 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=59.2
Q ss_pred CCCeEEEEcCcccccC---cCCCCcEEEEeCCHHHHHHHHHH-hc----------------cccceEEEe-------CCC
Q psy13086 17 KKVEFVDVGCGKLYLP---MFPSTLILGLEIRVKVSDYVIDE-WS----------------LYLKKMFFL-------YPD 69 (169)
Q Consensus 17 ~~~~iLDiGCG~Gla~---~~p~~~v~GiDis~~~l~~a~~~-~~----------------~~~d~v~~~-------f~d 69 (169)
+...|||||||+||+. .-++..++|+|||+.|++.|.++ +. ++||.+... ..|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~ 129 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD 129 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence 4688999999999433 23567999999999999999853 22 566655422 222
Q ss_pred CcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
++.. +-++|+ ..|+..++.+|++|++.+++.
T Consensus 130 ~s~~--~P~~Rl--~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 130 KSLH--VPKKRL--LRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cccc--ChHHHH--HHHhhhhhhhhccCceeEEEe
Confidence 2211 112332 578999999999999999985
No 75
>KOG2361|consensus
Probab=99.12 E-value=1.1e-10 Score=93.36 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=58.8
Q ss_pred eEEEEcCccc-----ccCcCCC--CcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeCC
Q psy13086 20 EFVDVGCGKL-----YLPMFPS--TLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLYP 68 (169)
Q Consensus 20 ~iLDiGCG~G-----la~~~p~--~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f~ 68 (169)
+|||||||.| +.+.+|+ ..+.++|.|+.+++..+++.. +++|.+.+.|-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 7999999999 5555555 899999999999999876422 67777766552
Q ss_pred --CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 69 --DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 69 --d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.-.++. ...++++++++|||||.+++.+
T Consensus 154 LSAi~pek--------~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 154 LSAIHPEK--------MQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EeccChHH--------HHHHHHHHHHHhCCCcEEEEee
Confidence 111111 3679999999999999999953
No 76
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.12 E-value=6.4e-10 Score=90.16 Aligned_cols=103 Identities=10% Similarity=0.097 Sum_probs=66.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF 72 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f 72 (169)
..+|||+|||+| ++...|..+++|+|+|+.+++.|++++. +++|.|..+.| +.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP--y~ 186 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPP--YI 186 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCC--cC
Confidence 578999999999 6677788999999999999999987643 13444433211 11
Q ss_pred ccc--c----hhh------hc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCce
Q psy13086 73 KRC--K----YKW------RI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFV 124 (169)
Q Consensus 73 ~~~--h----~~~------~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~ 124 (169)
... + ..+ .+ ....+++++.++|+|||.+++...... ...+...+... +|.
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~-~~~~~~~l~~~-gf~ 256 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQ-GEAVRALLAAA-GFA 256 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchH-HHHHHHHHHhC-CCc
Confidence 000 0 000 00 125688899999999999999764432 33355555543 344
No 77
>PRK04457 spermidine synthase; Provisional
Probab=99.11 E-value=3.5e-10 Score=92.17 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=60.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD 69 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d 69 (169)
..+|||||||+| ++..+|+.++++||+++.+++.|++++. .++|.|.+...+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 568999999999 5567899999999999999999987542 245555543211
Q ss_pred CcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
. ......+...++++++.++|+|||.+++.
T Consensus 147 ~----~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 147 G----EGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred C----CCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 1 11111223478999999999999999984
No 78
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.11 E-value=2.9e-10 Score=94.11 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=58.5
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEE---EeC-CC--Cccccc------ch
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMF---FLY-PD--PHFKRC------KY 77 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~---~~f-~d--~~f~~~------h~ 77 (169)
+..+|||||||+| +++++|+.+++++|. +.+++.|++++. +--+.+. ..+ .+ |.++.. |.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~ 227 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYS 227 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhc
Confidence 3579999999999 778899999999997 789999988765 1112222 111 11 222321 11
Q ss_pred hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 78 KWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
...-....++++++++|||||++++..
T Consensus 228 ~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 228 ANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 100012468999999999999999874
No 79
>PLN03075 nicotianamine synthase; Provisional
Probab=99.10 E-value=4.6e-10 Score=92.83 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=58.1
Q ss_pred CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEe
Q psy13086 17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFL 66 (169)
Q Consensus 17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~ 66 (169)
.+.+|+|||||.| ++..+|+.+++|+|+++.+++.|++.+. +.+|.|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 3688999999977 4456899999999999999999987652 122222221
Q ss_pred CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
. .|....-...++++.+++.|+|||.+++.+
T Consensus 203 -A------Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -A------LVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -c------ccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 1 111100013679999999999999999986
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=3.1e-10 Score=89.61 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe--------CCCCcccccchhhhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL--------YPDPHFKRCKYKWRI 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~--------f~d~~f~~~h~~~~~ 81 (169)
++.+|||||||+| ++... ++.+|+|+|+++.|++.|++++. ..++.+.+. .++..||.....-
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~-- 153 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA-- 153 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC--
Confidence 4689999999999 44443 45799999999999999998875 122222221 1122344321110
Q ss_pred ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
......+.+.+.|||||++++..
T Consensus 154 ~~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccchHHHHHhhCCCcEEEEEE
Confidence 01345567888999999998853
No 81
>PRK14967 putative methyltransferase; Provisional
Probab=99.09 E-value=7.1e-10 Score=87.94 Aligned_cols=85 Identities=11% Similarity=0.021 Sum_probs=55.4
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFK 73 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~ 73 (169)
+.+|||+|||+| ++.. +..+++|+|+|+.|++.|++++. .++|.|.+.- |+..
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np--Py~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNP--PYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECC--CCCC
Confidence 578999999999 3333 33589999999999999887643 2344444321 1110
Q ss_pred ccc---------h------hhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 74 RCK---------Y------KWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 74 ~~h---------~------~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
... . ........+++++.++|||||++++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 000 0 0000135688999999999999998643
No 82
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.08 E-value=1.6e-09 Score=85.24 Aligned_cols=133 Identities=12% Similarity=0.083 Sum_probs=76.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc---cceEEE-----eCC-CCccccc------c
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY---LKKMFF-----LYP-DPHFKRC------K 76 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~---~d~v~~-----~f~-d~~f~~~------h 76 (169)
+.+|||||||+| ++.. ...++|+|+|+.|++.+++++. .. +..+.. ... +..||.. +
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 678999999999 3333 3469999999999999988754 11 111111 111 1223321 1
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCC
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKG 156 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~ 156 (169)
+.. ....+++++.++|+|||.+++.+.......+....+..+..+...+..... . .......+.++.....|.
T Consensus 124 ~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~l~~~l~~~G~ 196 (224)
T TIGR01983 124 HVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHD----W-EKFIKPSELTSWLESAGL 196 (224)
T ss_pred hCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCC----h-hhcCCHHHHHHHHHHcCC
Confidence 111 135789999999999999998765444333333322222222222211111 0 122345567788888888
Q ss_pred CeE
Q psy13086 157 EKF 159 (169)
Q Consensus 157 ~i~ 159 (169)
.+-
T Consensus 197 ~i~ 199 (224)
T TIGR01983 197 RVK 199 (224)
T ss_pred eee
Confidence 873
No 83
>PRK00811 spermidine synthase; Provisional
Probab=99.08 E-value=8.9e-10 Score=90.71 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=62.0
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF 65 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~ 65 (169)
..+||+||||+| +.+..+..+|++||+++.|++.|++.++ +++|.|.+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 578999999999 3333344689999999999999986431 35777766
Q ss_pred eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
..++|+... ..+...++++.++++|+|||.+++...
T Consensus 157 D~~dp~~~~----~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 157 DSTDPVGPA----EGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCCCCCch----hhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 655654211 122346899999999999999998753
No 84
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.08 E-value=6e-10 Score=87.82 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-----cccceEE-----EeCCCCccccc------
Q psy13086 18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-----LYLKKMF-----FLYPDPHFKRC------ 75 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~-----~~f~d~~f~~~------ 75 (169)
+.+|||||||+| ++...| ..+++|+|+++.+++.|++++. ..+..+. ..+++..++..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 578999999999 555555 6899999999999999988753 1111111 11222233321
Q ss_pred chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
|+.. ....+++++.++|+|||.+++.+
T Consensus 132 ~~~~--~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVP--DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCC--CHHHHHHHHHHhccCCcEEEEEE
Confidence 1111 13678999999999999998764
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=1.1e-09 Score=83.50 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCC
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDP 70 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~ 70 (169)
+.+|||+|||+| ++.. +.+++|+|+|+.|++.+++++. ..+|.|....|--
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 578999999999 4444 5799999999999999987653 1233333211100
Q ss_pred c--cccc-----chh------hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086 71 H--FKRC-----KYK------WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH 120 (169)
Q Consensus 71 ~--f~~~-----h~~------~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~ 120 (169)
. .+.. +.. .......+++++.++|||||.+++..........+...+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~ 164 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKL 164 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHC
Confidence 0 0000 000 011135689999999999999988753322223344444444
No 86
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.07 E-value=1.3e-09 Score=88.34 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=66.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF 72 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f 72 (169)
..+|||+|||+| ++...|..+++|+|+|+.|++.|++|+. ..+|.|..+- |+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NP--Py~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANA--PYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECC--CCC
Confidence 358999999999 5566788899999999999999998753 1233333221 111
Q ss_pred cc-----------cch-hhhc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 73 KR-----------CKY-KWRI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 73 ~~-----------~h~-~~~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
.. .|. ...+ +...+++.+.++|||||.+++....... ..+...+..+.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~-~~v~~~l~~~g 232 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA-PLAVEAFARAG 232 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHHCC
Confidence 10 010 0001 1257888899999999999998765543 33556666554
No 87
>PRK06202 hypothetical protein; Provisional
Probab=99.07 E-value=5.5e-10 Score=88.91 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=52.7
Q ss_pred CCeEEEEcCccc-----ccC----cCCCCcEEEEeCCHHHHHHHHHHhc-cccce-----EEEeCCCCcccc------cc
Q psy13086 18 KVEFVDVGCGKL-----YLP----MFPSTLILGLEIRVKVSDYVIDEWS-LYLKK-----MFFLYPDPHFKR------CK 76 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~----~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~-----v~~~f~d~~f~~------~h 76 (169)
..+|||||||+| ++. ..++.+++|+|+|+.|++.|+++.. ..+.. -.+.+++..||. .|
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 578999999999 333 2356799999999999999987643 11111 011223334442 23
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
|...-....++++++|+++ |.+++..
T Consensus 141 h~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 2221112469999999998 4554543
No 88
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.06 E-value=8.7e-10 Score=86.04 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc--cccceE-----EEeCCCCccccc------chh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS--LYLKKM-----FFLYPDPHFKRC------KYK 78 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~--~~~d~v-----~~~f~d~~f~~~------h~~ 78 (169)
+.+|||+|||+| +++..|. .+++|+|+++.+++.++++.. ..+..+ .+.+++..++.. |+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 679999999999 5556665 799999999999999987653 111111 111222223321 111
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
. ....+++++.++|+|||.+++.+
T Consensus 120 ~--~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 120 T--DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred c--cHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 12579999999999999999864
No 89
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=1.3e-09 Score=90.82 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=66.1
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcc
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHF 72 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f 72 (169)
.+|||+|||+| ++..+|+.+++|+|+|+.+++.|++++. .++|.|..+ .|..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN--PPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN--PPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC--CCCC
Confidence 58999999999 6667888999999999999999988754 123333221 1111
Q ss_pred cc---------cchhhh----------cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086 73 KR---------CKYKWR----------IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC 126 (169)
Q Consensus 73 ~~---------~h~~~~----------~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~ 126 (169)
.. .++... -....+++++.++|+|||.+++..... ...+.+.+..+ .|.+.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~-~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDV-PFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhC-CCEEE
Confidence 00 000000 012568999999999999999976543 22355555443 34443
No 90
>KOG3010|consensus
Probab=99.05 E-value=1.7e-10 Score=92.17 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=53.1
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCC
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDP 70 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~ 70 (169)
...++|||||+| +|..+ .+|+|+|+|+.||+.|++.-+ +++|.|..-=.-.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 348999999999 44443 489999999999999986321 5566554322223
Q ss_pred cccccchhhhcccHHHHHHHHHhccCCc-EEEE
Q psy13086 71 HFKRCKYKWRIINQNLLSEYAYVLSEGG-IVYT 102 (169)
Q Consensus 71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG-~l~i 102 (169)
||+ .+.+.+++.|+||+.| .+.+
T Consensus 112 WFd---------le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 112 WFD---------LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hhc---------hHHHHHHHHHHcCCCCCEEEE
Confidence 444 3789999999999988 4443
No 91
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=2.2e-09 Score=93.05 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPD 69 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d 69 (169)
++.+|||+|||+| ++...++..++|+|+|+.|++.+++++. .++|.|.+.-|-
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 4678999999999 5556666799999999999999987754 123444332110
Q ss_pred Ccccc------cchhh---h-----cccHHHHHHHHHhccCCcEEEEEeC--ChHHH-HHHHHHHhcCCCceec
Q psy13086 70 PHFKR------CKYKW---R-----IINQNLLSEYAYVLSEGGIVYTITD--VKDLH-DWIVSHFTEHPLFVEC 126 (169)
Q Consensus 70 ~~f~~------~h~~~---~-----~~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~-~~~~~~~~~~~~f~~~ 126 (169)
..... .++.+ . -...++++.+.++|||||.++++|- .+... ......+..|+.|+..
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELL 397 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEe
Confidence 00000 00000 0 0134799999999999999998762 11111 2233445567777654
No 92
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.03 E-value=2.1e-09 Score=88.38 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=59.2
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcc
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHF 72 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f 72 (169)
.+|||+|||+| ++...|+.+++|+|+|+.+++.|++++. ..+|.|..+- |+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNP--Pyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNP--PYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECC--CCC
Confidence 58999999999 6677788999999999999999988653 1244333221 111
Q ss_pred cc---------cchhhh--c--------ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 73 KR---------CKYKWR--I--------INQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 73 ~~---------~h~~~~--~--------~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
.. .++... + ....+++++.++|+|||.+++....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 10 011000 0 1356899999999999999987654
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.3e-09 Score=90.10 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccce---EEEeCCCC-----cccccchh-hh
Q psy13086 15 CEKKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKK---MFFLYPDP-----HFKRCKYK-WR 80 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~---v~~~f~d~-----~f~~~h~~-~~ 80 (169)
..++.++||+|||+| .|.......++|+|+++.+++.|++|+. +.++. +....++. .||..-+. -.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 346789999999999 3334555679999999999999999876 44442 11111111 22211000 00
Q ss_pred cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE 125 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~ 125 (169)
-+...+..++.+.|||||.++++--..+..+...+.+..+ +|..
T Consensus 240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~-gf~v 283 (300)
T COG2264 240 EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQA-GFEV 283 (300)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhC-CCeE
Confidence 0135788999999999999999877777766555555433 3444
No 94
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.03 E-value=1.9e-09 Score=83.22 Aligned_cols=91 Identities=8% Similarity=-0.039 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHH----H-------------HHHHHhc-cccceEEEeCCCC-
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVS----D-------------YVIDEWS-LYLKKMFFLYPDP- 70 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l----~-------------~a~~~~~-~~~d~v~~~f~d~- 70 (169)
.++.+|||||||+| ++..+ +..+++|+|+|+.+- . ..++... ..+|.|....+.+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~ 110 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI 110 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC
Confidence 34789999999999 44444 567899999998540 0 0001111 3466665433211
Q ss_pred --cccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 71 --HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 71 --~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
.+...|.........+++++.++|+|||++++....
T Consensus 111 ~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 111 SGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 011111111001257899999999999999996543
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.02 E-value=2.4e-09 Score=92.23 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=64.6
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPH 71 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~ 71 (169)
+.+|||||||+| ++...|+.+++|+|+|+.|++.|++|+. .++|.|..+- |.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNP--PY 329 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNP--PY 329 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECC--CC
Confidence 568999999999 5666788999999999999999998753 1133333211 11
Q ss_pred cccc--c-------hh--hhc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 72 FKRC--K-------YK--WRI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 72 f~~~--h-------~~--~~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
.... + +. ..+ +...+++++.+.|+|||.+++..... ..+...+.+..++
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-Q~e~V~~ll~~~G 397 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-QGAAVRGVLAENG 397 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-HHHHHHHHHHHCC
Confidence 1100 0 00 000 12468888889999999998876443 2333455555543
No 96
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.02 E-value=2.5e-09 Score=92.60 Aligned_cols=109 Identities=21% Similarity=0.287 Sum_probs=66.9
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEE--------EeC--CCCccccc----
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMF--------FLY--PDPHFKRC---- 75 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~--------~~f--~d~~f~~~---- 75 (169)
++.+|||+|||+| ++...++..++|+|+|+.+++.+++++. ..++ .+. ..+ ++..||..
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 4689999999999 5555667799999999999999988765 1111 010 000 11122211
Q ss_pred --------ch----hhh--------c--ccHHHHHHHHHhccCCcEEEEEeC--ChHHHHH-HHHHHhcCCCcee
Q psy13086 76 --------KY----KWR--------I--INQNLLSEYAYVLSEGGIVYTITD--VKDLHDW-IVSHFTEHPLFVE 125 (169)
Q Consensus 76 --------h~----~~~--------~--~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~~~-~~~~~~~~~~f~~ 125 (169)
+. +++ + .+.++|++++++|||||+++.+|- .+..-+. ....+..||.|..
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 392 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPF 392 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCee
Confidence 00 000 0 135799999999999999998752 2222222 2234456777754
No 97
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=2.8e-09 Score=92.54 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP 68 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~ 68 (169)
++.+|||+|||+| ++... ++.+|+++|+|+.+++.+++++. +++|.|.+.-|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 4678999999999 45443 46799999999999999987754 22444443211
Q ss_pred CCccccc--c--hhhh--------c--ccHHHHHHHHHhccCCcEEEEEeC--ChHHHHHHH-HHHhcCCCceec
Q psy13086 69 DPHFKRC--K--YKWR--------I--INQNLLSEYAYVLSEGGIVYTITD--VKDLHDWIV-SHFTEHPLFVEC 126 (169)
Q Consensus 69 d~~f~~~--h--~~~~--------~--~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~~~~~-~~~~~~~~f~~~ 126 (169)
--.+... + .+++ + .+.++|.++.+.|||||.++.+|= .+...+... ..+..||.|...
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence 1101000 0 0000 0 235689999999999999998862 222233333 344568888754
No 98
>PRK01581 speE spermidine synthase; Validated
Probab=99.02 E-value=2.3e-09 Score=90.87 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=66.0
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH---------------hc--------------cccceE
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE---------------WS--------------LYLKKM 63 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~---------------~~--------------~~~d~v 63 (169)
..+||+||||+| +.+..+..++++||+++.|++.|++. +. ..+|.|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 578999999999 33333457999999999999999851 10 468888
Q ss_pred EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086 64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKD 108 (169)
Q Consensus 64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~ 108 (169)
.+.++||.-. ....+...++++.+++.|+|||.+++.+..+.
T Consensus 231 IvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 231 IIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred EEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 8888776421 11234457899999999999999988865544
No 99
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.01 E-value=3.7e-09 Score=83.88 Aligned_cols=85 Identities=15% Similarity=0.120 Sum_probs=55.2
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---cccceEEEe------CCCCccccc------ch
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---LYLKKMFFL------YPDPHFKRC------KY 77 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~v~~~------f~d~~f~~~------h~ 77 (169)
+.+|||||||+| +++. ..+++|+|+++.+++.|++++. ..++.+... ..+..||.. ++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 578999999999 3332 4689999999999999987654 111111100 011223321 11
Q ss_pred hhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 78 KWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
.. ....+++.+.++|+|||.+++.+..
T Consensus 127 ~~--~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 127 VP--DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cC--CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 11 1257899999999999999987643
No 100
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=3.8e-09 Score=85.13 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=78.3
Q ss_pred CCCCCeEEEEcCccc-----ccC-cCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeC
Q psy13086 15 CEKKVEFVDVGCGKL-----YLP-MFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLY 67 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G-----la~-~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f 67 (169)
+.++.+|||.|.|+| ||. ..|..+|+..|+.+..++.|++|++ ..+|++++.-
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDm 171 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDL 171 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcC
Confidence 456899999999999 553 4577899999999999999998865 5788889999
Q ss_pred CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH 120 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~ 120 (169)
|+|| .+++.+..+|||||.+.+-++.-+-.+...+.++++
T Consensus 172 p~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 172 PDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred CChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 9997 689999999999999999887766666666677766
No 101
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=5.7e-10 Score=92.43 Aligned_cols=108 Identities=13% Similarity=0.175 Sum_probs=68.3
Q ss_pred CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEeCC----CCcccccchh-hhcccHH
Q psy13086 17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMFFLYP----DPHFKRCKYK-WRIINQN 85 (169)
Q Consensus 17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~f~----d~~f~~~h~~-~~~~~~~ 85 (169)
++.+||||||||| .|.......|+|+|+++.+++.|++|+. +.++ .+.+... ...|+..-.. ..-+...
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~vL~~ 240 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILADVLLE 240 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HHHHHH
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHHHHHH
Confidence 4679999999999 4445555689999999999999999876 2222 2222211 1122211000 0001246
Q ss_pred HHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086 86 LLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC 126 (169)
Q Consensus 86 ~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~ 126 (169)
++..+.++|+|||.|+++--.......+.+.+. . +|...
T Consensus 241 l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~-~-g~~~~ 279 (295)
T PF06325_consen 241 LAPDIASLLKPGGYLILSGILEEQEDEVIEAYK-Q-GFELV 279 (295)
T ss_dssp HHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHH-T-TEEEE
T ss_pred HHHHHHHhhCCCCEEEEccccHHHHHHHHHHHH-C-CCEEE
Confidence 788889999999999998655555565666664 3 67654
No 102
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.99 E-value=5.2e-09 Score=82.49 Aligned_cols=132 Identities=12% Similarity=0.029 Sum_probs=73.3
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeC-----CCCccccc------chh
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLY-----PDPHFKRC------KYK 78 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f-----~d~~f~~~------h~~ 78 (169)
+..+|||||||+| ++.. ...++|+|+|+.|++.|++++. ... +.+.+.. .+..||.. ++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 3688999999999 4333 4689999999999999998765 111 1121111 11334421 111
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCe
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEK 158 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i 158 (169)
..-....+++++++++++++.+.+..... +.. ....+... |.... .+......+.++++......|..+
T Consensus 133 ~~~~~~~~l~~i~~~~~~~~~i~~~~~~~-~~~-~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 133 PASDMAKALGHLASLTKERVIFTFAPKTA-WLA-FLKMIGEL--FPGSS-------RATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCch-HHH-HHHHHHhh--CcCcc-------cccceEEecHHHHHHHHHHcCcee
Confidence 10012568999999999877766543221 111 11111111 11100 011113356778888888889877
Q ss_pred EEE
Q psy13086 159 FCA 161 (169)
Q Consensus 159 ~~~ 161 (169)
...
T Consensus 202 ~~~ 204 (219)
T TIGR02021 202 VRE 204 (219)
T ss_pred eee
Confidence 544
No 103
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.99 E-value=8.3e-09 Score=79.84 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe-------CCC-Ccccccchhhhc
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------YPD-PHFKRCKYKWRI 81 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------f~d-~~f~~~h~~~~~ 81 (169)
.++.+++||||||| ++...|..++++||-++++++..++|.. -.++.+.+. .++ |.||..=---.-
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg~ 112 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGG 112 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCCC
Confidence 45789999999999 6666899999999999999999988876 225555432 111 123321000000
Q ss_pred ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCc
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLF 123 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f 123 (169)
-.+.+++.+...|||||+++...-..+-.....+.+.+.+.+
T Consensus 113 ~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 113 NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 137899999999999999998654444444455666666654
No 104
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.98 E-value=1.2e-09 Score=95.34 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=55.4
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--ccc-----ce--EEEeCCCCccccc------ch
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYL-----KK--MFFLYPDPHFKRC------KY 77 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~-----d~--v~~~f~d~~f~~~------h~ 77 (169)
+.+|||||||+| ++.. ..+++|+|+|+.|++.+++... ..+ |. ..+.+++..||.. |+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 568999999999 4444 3589999999999998765321 111 11 1123444455532 21
Q ss_pred hhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 78 KWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 78 ~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
...-....++++++|+|||||.+++.
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 11101257999999999999999885
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=98.98 E-value=2.3e-09 Score=87.81 Aligned_cols=90 Identities=9% Similarity=0.039 Sum_probs=60.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcc---cc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHF---KR 74 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f---~~ 74 (169)
..+|||+|||+| ++.+.+..+++|+|+|+.|++.|+++.+ ..+|.|..+-|-... +.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 468999999999 3445556799999999999999988643 346666542221111 10
Q ss_pred cch-hh-------hc-ccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086 75 CKY-KW-------RI-INQNLLSEYAYVLSEGGIVYTITDVK 107 (169)
Q Consensus 75 ~h~-~~-------~~-~~~~~l~~~~rvLkpGG~l~i~~d~~ 107 (169)
..+ .. .. ...++++.+.++|+|+|.++++-+..
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 100 00 11 13689999999999999998875543
No 106
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.98 E-value=2.1e-09 Score=90.10 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=57.3
Q ss_pred CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcc
Q psy13086 17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHF 72 (169)
Q Consensus 17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f 72 (169)
++.+|||+||||| +........++|+|+++.|++.|++|+. .++|.|.. ||-+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~---dPPy 258 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT---DPPY 258 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE---CCCC
Confidence 3578999999999 2223346799999999999999988764 12222222 1111
Q ss_pred cccchh----hhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 73 KRCKYK----WRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 73 ~~~h~~----~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
...... ..-....++++++++|||||.+++..+.
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 110000 0011367999999999999999887644
No 107
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=5.4e-09 Score=90.96 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=67.7
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP 68 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~ 68 (169)
++.+|||+|||+| ++... +...++|+|+++.+++.+++++. +++|.|.+.-|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 3578999999999 55544 56799999999999999988754 12333333211
Q ss_pred CCcccc-cc-----hh---hh---c--ccHHHHHHHHHhccCCcEEEEEeCC--h-HHHHHHHHHHhcCCCceecC
Q psy13086 69 DPHFKR-CK-----YK---WR---I--INQNLLSEYAYVLSEGGIVYTITDV--K-DLHDWIVSHFTEHPLFVECD 127 (169)
Q Consensus 69 d~~f~~-~h-----~~---~~---~--~~~~~l~~~~rvLkpGG~l~i~~d~--~-~~~~~~~~~~~~~~~f~~~~ 127 (169)
-..... .+ +. .. + .+..+++++.++|||||.++.+|-. + +-.......+..++.|+..+
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence 000000 00 00 00 0 1346899999999999999976522 2 22222334455677777653
No 108
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=5.9e-09 Score=85.83 Aligned_cols=103 Identities=13% Similarity=0.186 Sum_probs=68.7
Q ss_pred eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccccc
Q psy13086 20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFKRC 75 (169)
Q Consensus 20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~~~ 75 (169)
+|||||||+| ++...|+++|+|+|+|+.+++.|++|+. +.+|.|.. -.|+-...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVs--NPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVS--NPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEe--CCCCCCCc
Confidence 6999999999 7788899999999999999999998765 22333322 12221111
Q ss_pred --chhh---------hc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086 76 --KYKW---------RI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE 125 (169)
Q Consensus 76 --h~~~---------~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~ 125 (169)
+... .+ +...++.++.+.|+|||.+++...... .+...+.+...+.|..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q-~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ-GEAVKALFEDTGFFEI 258 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc-HHHHHHHHHhcCCceE
Confidence 0000 00 236799999999999999999764332 3335556666553443
No 109
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.97 E-value=1.4e-09 Score=91.53 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=55.8
Q ss_pred CCeEEEEcCccc--ccCc--CCCCcEEEEeCCHHHHHHHHHHhc------------cccceEEE-----------eCCCC
Q psy13086 18 KVEFVDVGCGKL--YLPM--FPSTLILGLEIRVKVSDYVIDEWS------------LYLKKMFF-----------LYPDP 70 (169)
Q Consensus 18 ~~~iLDiGCG~G--la~~--~p~~~v~GiDis~~~l~~a~~~~~------------~~~d~v~~-----------~f~d~ 70 (169)
+.+|||+|||.| |.+- ..-..++|+|||...|+.|++|.. ..+.+.++ .++++
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~ 142 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPR 142 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSST
T ss_pred CCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcccc
Confidence 689999999988 3321 123589999999999999998872 01222211 12222
Q ss_pred --cccc------cchhhhc--ccHHHHHHHHHhccCCcEEEEEeCChHHH
Q psy13086 71 --HFKR------CKYKWRI--INQNLLSEYAYVLSEGGIVYTITDVKDLH 110 (169)
Q Consensus 71 --~f~~------~h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~~~~~ 110 (169)
.||. .|+.-.- -...+|+.++..|||||.|+.++...+..
T Consensus 143 ~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 3332 2321100 12569999999999999999988665443
No 110
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.96 E-value=5e-09 Score=85.58 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=61.1
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL 66 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~ 66 (169)
..+||+||||+| ++...+..+++++|+++++++.|++.++ ..+|.|.+.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 459999999999 3333345689999999999999987542 246666555
Q ss_pred CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
.++|.-. ...+...++++.++++|+|||.+++.+..
T Consensus 153 ~~~~~~~----~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 153 STDPVGP----AETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred CCCCCCc----ccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4444211 11233468999999999999999987543
No 111
>KOG1271|consensus
Probab=98.94 E-value=2.4e-09 Score=82.69 Aligned_cols=122 Identities=19% Similarity=0.107 Sum_probs=72.8
Q ss_pred CeEEEEcCccc-----ccC-cCCCCcEEEEeCCHHHHHHHHHHhc-------------------------------cccc
Q psy13086 19 VEFVDVGCGKL-----YLP-MFPSTLILGLEIRVKVSDYVIDEWS-------------------------------LYLK 61 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~-~~p~~~v~GiDis~~~l~~a~~~~~-------------------------------~~~d 61 (169)
++|||+|||+| |++ .+++ .++|+|.|+++++.|+.... +.+|
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 49999999999 444 3554 59999999999999864222 2222
Q ss_pred eEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCC
Q psy13086 62 KMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKL 141 (169)
Q Consensus 62 ~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 141 (169)
+|.+. ||. .. .|. .-.+..+.+.|+|||+|+|.+=+-. .+.+.+.+... .|+....
T Consensus 148 AisLs-~d~----~~-~r~---~~Y~d~v~~ll~~~gifvItSCN~T-~dELv~~f~~~-~f~~~~t------------- 203 (227)
T KOG1271|consen 148 AISLS-PDG----PV-GRL---VVYLDSVEKLLSPGGIFVITSCNFT-KDELVEEFENF-NFEYLST------------- 203 (227)
T ss_pred eeecC-CCC----cc-cce---eeehhhHhhccCCCcEEEEEecCcc-HHHHHHHHhcC-CeEEEEe-------------
Confidence 22221 111 00 011 2367778899999999999762222 23345555533 3444310
Q ss_pred CCCCHHHHHHHHcCCCeEEEEEEec
Q psy13086 142 YQSTEEGQKVTRNKGEKFCAVFRRG 166 (169)
Q Consensus 142 ~~~T~ye~~~~~~g~~i~~~~~~r~ 166 (169)
.+|.-.+....+|-.+..+.|+|+
T Consensus 204 -vp~ptF~FgG~~G~tvt~vaF~~k 227 (227)
T KOG1271|consen 204 -VPTPTFMFGGSVGSTVTSVAFLRK 227 (227)
T ss_pred -eccceEEeccccccEEEEEEEecC
Confidence 011124455678888888888764
No 112
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.94 E-value=6.6e-09 Score=91.91 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=34.9
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..+|||||||+| ++..+|+.+++|+|+|+.|++.|++++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~ 183 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI 183 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH
Confidence 468999999999 5567788999999999999999988753
No 113
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.94 E-value=3.7e-09 Score=83.00 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeC-------C-CCcccccchhhhcc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLY-------P-DPHFKRCKYKWRII 82 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f-------~-d~~f~~~h~~~~~~ 82 (169)
++.+|||||||+| ++... .+++|+|+++.|++.|++++. ..++.+.+.. + ...||...... .
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~--~ 153 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA--A 153 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEcc--C
Confidence 4679999999999 34443 379999999999999998765 2222222111 1 11233211000 1
Q ss_pred cHHHHHHHHHhccCCcEEEEEeC
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
...+.+.+.+.|+|||.+++...
T Consensus 154 ~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhhhHHHHHhcCCCcEEEEEEc
Confidence 23456788899999999998653
No 114
>PRK03612 spermidine synthase; Provisional
Probab=98.92 E-value=7.3e-09 Score=91.93 Aligned_cols=84 Identities=11% Similarity=0.175 Sum_probs=64.0
Q ss_pred CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHH---------------hc--------------cccce
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDE---------------WS--------------LYLKK 62 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~---------------~~--------------~~~d~ 62 (169)
..+|||||||+| +++ +|. .++++||++++|++.|+++ +. .++|.
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 578999999999 333 455 7999999999999999872 11 46788
Q ss_pred EEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 63 MFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 63 v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
|.+.+++|+... ..++...++++.+.++|||||.+++.+.
T Consensus 377 Ii~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 888777764211 1233457899999999999999998753
No 115
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.92 E-value=4.6e-09 Score=83.23 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
++.+|||+|||.| ||. .+.+|+|||+|+.+++.|.+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHH
Confidence 3579999999999 554 36799999999999998643
No 116
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.91 E-value=1.5e-08 Score=82.55 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=66.6
Q ss_pred CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPD 69 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d 69 (169)
++.+|||+|||+| ++.... ...|+++|+++.+++.+++++. ..+|.|.+.-|-
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 3678999999999 455443 4589999999999999987754 224444432110
Q ss_pred C---cc----cc--cchhhhc-----ccHHHHHHHHHhccCCcEEEEEeC--ChHHHHHHH-HHHhcCCCceec
Q psy13086 70 P---HF----KR--CKYKWRI-----INQNLLSEYAYVLSEGGIVYTITD--VKDLHDWIV-SHFTEHPLFVEC 126 (169)
Q Consensus 70 ~---~f----~~--~h~~~~~-----~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~~~~~-~~~~~~~~f~~~ 126 (169)
. .. +. ......+ .+.++|+.+.+.|||||+++.+|- .+..-+... ..+..++.|...
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~ 224 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEE 224 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEe
Confidence 0 00 00 0000011 135699999999999999988852 222222233 333456766543
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=1.5e-08 Score=88.20 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=67.3
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDP 70 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~ 70 (169)
++.+|||+|||+| ++... +...++|+|+|+.|++.+++++. .++|.|.+.-|-.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCT 329 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCCC
Confidence 3678999999999 44443 34699999999999999987754 1244444321100
Q ss_pred ---cccc-cchhhhc----------ccHHHHHHHHHhccCCcEEEEEeCC--hHHHHH-HHHHHhcCCCceec
Q psy13086 71 ---HFKR-CKYKWRI----------INQNLLSEYAYVLSEGGIVYTITDV--KDLHDW-IVSHFTEHPLFVEC 126 (169)
Q Consensus 71 ---~f~~-~h~~~~~----------~~~~~l~~~~rvLkpGG~l~i~~d~--~~~~~~-~~~~~~~~~~f~~~ 126 (169)
.+.. ...+++. .+..+|+++.++|||||+++++|-. +...+. +...+..|+.|...
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~ 402 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAE 402 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEe
Confidence 0000 0000000 1346899999999999999998732 222222 23344567777654
No 118
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.90 E-value=6e-08 Score=75.19 Aligned_cols=140 Identities=11% Similarity=-0.043 Sum_probs=75.8
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH-hc---cccceEEEeCCCCccccc------chhhhcc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE-WS---LYLKKMFFLYPDPHFKRC------KYKWRII 82 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~-~~---~~~d~v~~~f~d~~f~~~------h~~~~~~ 82 (169)
+.+|||||||+| ++.. ....++|+|+|+.|++.|+++ +. ..+......+++..||.. |+...
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d-- 90 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN-- 90 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC--
Confidence 578999999999 3333 356889999999999998753 21 111100001333344421 22211
Q ss_pred cHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEEEE
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAV 162 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~ 162 (169)
...+++++.|+++ .+++......+....... ..+..+.....-...|.+..+.......++.+.+...|..+-...
T Consensus 91 ~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 91 PEEILDEMLRVGR---HAIVSFPNFGYWRVRWSI-LTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred HHHHHHHHHHhCC---eEEEEcCChhHHHHHHHH-HhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 3568888877765 445554444333311111 112111110000001111112356778889999999999997776
Q ss_pred EE
Q psy13086 163 FR 164 (169)
Q Consensus 163 ~~ 164 (169)
+.
T Consensus 167 ~~ 168 (194)
T TIGR02081 167 AF 168 (194)
T ss_pred Ee
Confidence 65
No 119
>PLN02366 spermidine synthase
Probab=98.89 E-value=1.1e-08 Score=85.23 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=62.0
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF 65 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~ 65 (169)
..+||+||||+| +++..+..+++.||+++.+++.|++.++ +.+|.|.+
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 578999999999 4433233689999999999999987431 24677766
Q ss_pred eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
..++|+.- ...+...++++.++++|+|||.++.+..
T Consensus 172 D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 172 DSSDPVGP----AQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred cCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 66665422 1233457899999999999999987654
No 120
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=2.1e-08 Score=87.12 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=67.9
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-c------------------------ccceEEE
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-L------------------------YLKKMFF 65 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~------------------------~~d~v~~ 65 (169)
++.+|||+|||+| ++... +...|+++|+++.|++.+++++. . ++|.|.+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 3678999999999 55543 45699999999999999988754 1 2333332
Q ss_pred eCCC---Cccc-ccchhhh--------c--ccHHHHHHHHHhccCCcEEEEEe--CChHH-HHHHHHHHhcCCCceec
Q psy13086 66 LYPD---PHFK-RCKYKWR--------I--INQNLLSEYAYVLSEGGIVYTIT--DVKDL-HDWIVSHFTEHPLFVEC 126 (169)
Q Consensus 66 ~f~d---~~f~-~~h~~~~--------~--~~~~~l~~~~rvLkpGG~l~i~~--d~~~~-~~~~~~~~~~~~~f~~~ 126 (169)
.-|- ..+. ....+++ + .+.++++++.++|||||+++.+| -.+.. ..-+...+..||.|+..
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence 1110 0000 0000000 0 13678999999999999998775 22222 22234455678888754
No 121
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.88 E-value=6.3e-09 Score=81.24 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=51.8
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc--eEEE-----eCCCCcccc------cch
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK--KMFF-----LYPDPHFKR------CKY 77 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d--~v~~-----~f~d~~f~~------~h~ 77 (169)
++.++||||||.| ||.. +..|+++|+|+..++.+++.+. .+++ .... .++ ..++. .++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 4679999999999 5554 6799999999999988765332 1222 1000 111 11121 111
Q ss_pred hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 78 KWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..+-..+.+++.+...++|||.+++.+
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 112123779999999999999988854
No 122
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.87 E-value=7.7e-09 Score=85.53 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHH--HHhc------------------
Q psy13086 3 WSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVI--DEWS------------------ 57 (169)
Q Consensus 3 ~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~--~~~~------------------ 57 (169)
|+++-++..+ .++.+|||||||+| ++.+- ...|+|||.+..-..+.+ +++-
T Consensus 104 W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 104 WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 5555555432 34789999999999 44443 348999999987544321 2211
Q ss_pred -cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 58 -LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 58 -~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+.+|.|+.. ....|.+ ..-..|++++..|+|||.+++.|
T Consensus 180 ~~~FDtVF~M------GVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 LGAFDTVFSM------GVLYHRR--SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cCCcCEEEEe------eehhccC--CHHHHHHHHHHhhCCCCEEEEEE
Confidence 233333210 0011111 13479999999999999999875
No 123
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.86 E-value=1.8e-08 Score=67.54 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=50.9
Q ss_pred eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCCcc
Q psy13086 20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDPHF 72 (169)
Q Consensus 20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~~f 72 (169)
++||+|||+| ++. .+..+++|+|+++.+++.+++... ..+|.+....+..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999 333 467899999999999998873211 112222222111110
Q ss_pred cccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 73 KRCKYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 73 ~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
.-....+++.+.+.|+|||.+++.
T Consensus 80 -------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 012367999999999999999875
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.86 E-value=1.1e-08 Score=85.80 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=55.8
Q ss_pred CCCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCC--------Ccccccchhhhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPD--------PHFKRCKYKWRI 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d--------~~f~~~h~~~~~ 81 (169)
++.+|||||||+| +++..+. ..|+|+|+++.|++.|++++. ..++.+.+...| ..||..... .
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~--~ 157 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT--V 157 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC--C
Confidence 4679999999999 5555443 479999999999999998765 233433322211 112221100 0
Q ss_pred ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
........+.+.|+|||++++..
T Consensus 158 g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chHHhHHHHHHhcCCCCEEEEEe
Confidence 01345567889999999998854
No 125
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.83 E-value=7e-09 Score=80.96 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCC----CCcccccc------hhhh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYP----DPHFKRCK------YKWR 80 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~----d~~f~~~h------~~~~ 80 (169)
-.++||+|||.| ||.+- ..++++|+|+.+++.|++|+. ..++.+...+| +..||..+ +...
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSS
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCC
Confidence 367999999999 66664 489999999999999999876 22222222222 22333211 1110
Q ss_pred -cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 81 -IINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 81 -~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
-....+++.+...|+|||.|++.+-.
T Consensus 122 ~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 01246889999999999999998743
No 126
>PTZ00146 fibrillarin; Provisional
Probab=98.83 E-value=1.8e-08 Score=83.23 Aligned_cols=78 Identities=12% Similarity=0.203 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHH----HHHHHHHH--hc----------------cccceEEEeC
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVK----VSDYVIDE--WS----------------LYLKKMFFLY 67 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~----~l~~a~~~--~~----------------~~~d~v~~~f 67 (169)
.+..+|||+|||+| +|... +...|++||+|+. |++.|+++ +. .++|.|++..
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 34679999999999 55554 3568999999986 44555432 11 2244444433
Q ss_pred CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
..|+ ....++.++.++|||||.|+|.
T Consensus 211 a~pd----------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 211 AQPD----------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCcc----------hHHHHHHHHHHhccCCCEEEEE
Confidence 2221 0124667899999999999995
No 127
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.82 E-value=1.7e-09 Score=86.24 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCeEEEEcCccc-ccCcCC--CCcEEEEeCCHHHHHHHHHHhc----cccceE-EEe-CCCCcccccchhhhc----ccH
Q psy13086 18 KVEFVDVGCGKL-YLPMFP--STLILGLEIRVKVSDYVIDEWS----LYLKKM-FFL-YPDPHFKRCKYKWRI----INQ 84 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~~~p--~~~v~GiDis~~~l~~a~~~~~----~~~d~v-~~~-f~d~~f~~~h~~~~~----~~~ 84 (169)
=.++||+||||| ...... -..++|||||++|++.|.++-- ...+.+ ++. ..+.-||......-+ ..+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le 205 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE 205 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchh
Confidence 367999999999 333332 2589999999999999987521 111111 111 111112211110000 026
Q ss_pred HHHHHHHHhccCCcEEEEEe
Q psy13086 85 NLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~~ 104 (169)
.++.-+...|+|||.|.|++
T Consensus 206 ~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 206 GLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hHHHHHHHhcCCCceEEEEe
Confidence 78899999999999999985
No 128
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.82 E-value=1.5e-08 Score=80.53 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
++.+|||+|||.| ||. .+.+|+|||+|+.+++.|.+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~ 77 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFA 77 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHH
Confidence 3579999999999 554 46899999999999998743
No 129
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.81 E-value=1.1e-07 Score=79.66 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.2
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+.+|||||||+| +++. +.+|+|+|+|+.|++.|+++.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH
Confidence 579999999999 4433 5799999999999999988754
No 130
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.80 E-value=1.9e-08 Score=80.68 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=55.3
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCC--------------CCcccc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYP--------------DPHFKR 74 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~--------------d~~f~~ 74 (169)
+..+|||||||+| ++... ++.+++++|+++++++.|++++. ..+ +.+.+... +..||.
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 4678999999999 45544 46799999999999999998865 111 12221110 112221
Q ss_pred c---chhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086 75 C---KYKWRIINQNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 75 ~---h~~~~~~~~~~l~~~~rvLkpGG~l~i 102 (169)
. ..+. ....+++.+.+.|+|||.+++
T Consensus 148 VfiDa~k~--~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 148 AFVDADKP--NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEECCCHH--HHHHHHHHHHHhcCCCeEEEE
Confidence 0 0011 125689999999999999876
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.76 E-value=1.2e-07 Score=81.70 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=55.3
Q ss_pred CCCeEEEEcCccc---ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-c--------------------------ccceEEE
Q psy13086 17 KKVEFVDVGCGKL---YLPMF-PSTLILGLEIRVKVSDYVIDEWS-L--------------------------YLKKMFF 65 (169)
Q Consensus 17 ~~~~iLDiGCG~G---la~~~-p~~~v~GiDis~~~l~~a~~~~~-~--------------------------~~d~v~~ 65 (169)
++.+|||+|||+| ++... ...++++||+|+.+++.|++|+. + ++|.|.+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 3678999999999 33222 34589999999999999988754 1 2333332
Q ss_pred eCCCCcccccc-hhhhc--ccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 66 LYPDPHFKRCK-YKWRI--INQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 66 ~f~d~~f~~~h-~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
. .|.|.... ..... -...+++...++|+|||.|+..|-
T Consensus 300 D--PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 D--PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred C--CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1 12232111 00000 024566778899999999998653
No 132
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.76 E-value=3.3e-08 Score=77.90 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..+|||||||+| ++.. ...++|+|+|+.|++.|+++..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAP 106 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHH
Confidence 578999999999 4444 3569999999999999988754
No 133
>KOG2899|consensus
Probab=98.72 E-value=7.1e-08 Score=77.47 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=35.8
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+..+|||||-.| +|+.+....++|+||++..|+.|+++++
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 457999999999 7788888899999999999999998765
No 134
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.69 E-value=9.6e-08 Score=77.35 Aligned_cols=95 Identities=17% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCCeEEEEcCccc-----ccC-cCCCCcEEEEeCCHHHHHHHHHHhc-------------------------cccceEEE
Q psy13086 17 KKVEFVDVGCGKL-----YLP-MFPSTLILGLEIRVKVSDYVIDEWS-------------------------LYLKKMFF 65 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~-~~p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~d~v~~ 65 (169)
++.+|||.|.|+| |+. ..|...|+-.|+.++.++.|++++. ..+|+|++
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEE
Confidence 4789999999999 443 3578899999999999999998754 24789999
Q ss_pred eCCCCcccccchhhhcccHHHHHHHHHhc-cCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086 66 LYPDPHFKRCKYKWRIINQNLLSEYAYVL-SEGGIVYTITDVKDLHDWIVSHFTEHPLFVE 125 (169)
Q Consensus 66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvL-kpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~ 125 (169)
..|+|| .++..+.++| ||||.+.+=++.-+-.....+.+.+++ |..
T Consensus 120 Dlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~g-f~~ 166 (247)
T PF08704_consen 120 DLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHG-FTD 166 (247)
T ss_dssp ESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTT-EEE
T ss_pred eCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCC-Cee
Confidence 999998 4788889999 999999988887666666777777775 533
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.68 E-value=2.2e-08 Score=79.24 Aligned_cols=87 Identities=13% Similarity=0.155 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCCC--------cccccchhhh
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDP--------HFKRCKYKWR 80 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~--------~f~~~h~~~~ 80 (169)
.++.+|||||||+| ++... +...|++||+.+.+++.|++++. ..++.+.+...|. -||..+..-.
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a 150 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAA 150 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSB
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeec
Confidence 45789999999999 45443 44579999999999999998876 2222332222111 1222111100
Q ss_pred cccHHHHHHHHHhccCCcEEEEEe
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.+..-..+.+.||+||++++--
T Consensus 151 --~~~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 151 --VPEIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp --BSS--HHHHHTEEEEEEEEEEE
T ss_pred --cchHHHHHHHhcCCCcEEEEEE
Confidence 1233455778899999998853
No 136
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.1e-08 Score=76.01 Aligned_cols=85 Identities=11% Similarity=0.099 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCCCc--------ccccchhhhc
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDPH--------FKRCKYKWRI 81 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~~--------f~~~h~~~~~ 81 (169)
.++.+|||||||+| ||+.-. +|+.||..+...+.|++|+. -.++.|.+.+-|-+ ||...-.-.
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa- 147 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAA- 147 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeec-
Confidence 45789999999999 555432 99999999999999999876 22322433333321 221100000
Q ss_pred ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.+..=+.+.+-||+||++++-.
T Consensus 148 -a~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 148 -APEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred -cCCCCHHHHHhcccCCEEEEEE
Confidence 1223344567899999998853
No 137
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.63 E-value=3.2e-07 Score=84.18 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLY 67 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f 67 (169)
++.+|||+||||| ++. ....+|++||+|+.+++.|++|+. .++|.|.+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~-~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD- 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAAL-GGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID- 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC-
Confidence 3678999999999 232 233479999999999999998764 134444332
Q ss_pred CCCcccccch---hhh--cccHHHHHHHHHhccCCcEEEEEeCChHH
Q psy13086 68 PDPHFKRCKY---KWR--IINQNLLSEYAYVLSEGGIVYTITDVKDL 109 (169)
Q Consensus 68 ~d~~f~~~h~---~~~--~~~~~~l~~~~rvLkpGG~l~i~~d~~~~ 109 (169)
.|.|..... ... -....+++.+.++|+|||.+++.+....+
T Consensus 616 -PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~ 661 (702)
T PRK11783 616 -PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF 661 (702)
T ss_pred -CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence 223321100 000 01256888999999999999998765443
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=98.63 E-value=9.9e-08 Score=76.70 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=52.0
Q ss_pred CCeEEEEcCccc-----ccCcC---CCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCccc-
Q psy13086 18 KVEFVDVGCGKL-----YLPMF---PSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFK- 73 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~---p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~- 73 (169)
+.+|||+|||+| ++.+. +..+|+|||+++.|++.|++++. .++|.|..+-| .++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPP--Y~~~ 127 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPP--FGKI 127 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCC--CCCc
Confidence 578999999999 33322 35799999999999999998753 34555544221 111
Q ss_pred -ccc----hhhhcccHHHHHHHHHhccCCcE
Q psy13086 74 -RCK----YKWRIINQNLLSEYAYVLSEGGI 99 (169)
Q Consensus 74 -~~h----~~~~~~~~~~l~~~~rvLkpGG~ 99 (169)
..+ +....+...+++...+++++|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 111 11122346789999996666664
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.58 E-value=3.7e-07 Score=79.51 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=60.2
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe------------CCCCcccccchh-
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL------------YPDPHFKRCKYK- 78 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~------------f~d~~f~~~h~~- 78 (169)
+.+|||+|||+| +|... ..++|+|+|+.|++.|++++. ..++.+.+. +++..||..-..
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 578999999999 44443 689999999999999998765 222222211 111122221000
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH 116 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~ 116 (169)
.+.-....++.+.+ |+|++.+|++++..+++..+...
T Consensus 376 Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L 412 (443)
T PRK13168 376 PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVL 412 (443)
T ss_pred CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHH
Confidence 00012456666655 79999999999877777655443
No 140
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.57 E-value=3.4e-07 Score=72.85 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=59.6
Q ss_pred CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEeC-----------CCCcccc---
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLK-KMFFLY-----------PDPHFKR--- 74 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~f-----------~d~~f~~--- 74 (169)
+..+|||||.+.| +|...| +.+++.||+++++.+.|++++. ..++ .|.+.. .+..||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 4688999999999 777777 7899999999999999998876 1111 122111 1222331
Q ss_pred cchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 75 CKYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
-+.|. ..+.+++.+.++|+|||.+++-
T Consensus 139 DadK~--~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DADKA--DYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eCChh--hCHHHHHHHHHHhCCCcEEEEe
Confidence 01121 1478999999999999999873
No 141
>KOG2904|consensus
Probab=98.56 E-value=3.7e-07 Score=74.59 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=35.2
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++..|||+|||+| ++...|+.++++||.|+.++..|.+|+.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~q 193 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQ 193 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHH
Confidence 3557999999999 5566789999999999999999987754
No 142
>KOG1975|consensus
Probab=98.54 E-value=3.3e-07 Score=76.32 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=65.8
Q ss_pred CCeEEEEcCccc--ccCcCC-C-CcEEEEeCCHHHHHHHHHHhc---c-----ccceEE-------------EeCCCCcc
Q psy13086 18 KVEFVDVGCGKL--YLPMFP-S-TLILGLEIRVKVSDYVIDEWS---L-----YLKKMF-------------FLYPDPHF 72 (169)
Q Consensus 18 ~~~iLDiGCG~G--la~~~p-~-~~v~GiDis~~~l~~a~~~~~---~-----~~d~v~-------------~~f~d~~f 72 (169)
...+||+|||.| |.+--. + ..++|+||++..|+.|++|.. + .+.+++ +.++||.|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 567999999999 333211 1 389999999999999998754 1 122332 23466666
Q ss_pred cc------cchhhhc--ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHH
Q psy13086 73 KR------CKYKWRI--INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHF 117 (169)
Q Consensus 73 ~~------~h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~ 117 (169)
|. .|+.... -..-+++.+++.|||||.|+-+.+..+...+-....
T Consensus 198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 63 2322110 014589999999999999988777766655444443
No 143
>PLN02672 methionine S-methyltransferase
Probab=98.51 E-value=1.3e-06 Score=83.06 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=34.4
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
+.+|||||||+| ++..+|..+++|+|+|+.+++.|++|+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 458999999999 667788889999999999999997665
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.49 E-value=8.8e-07 Score=67.24 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+.+|||||||+| ++.+ ..+++|+|+++.|++.+++++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhc
Confidence 578999999999 4444 4689999999999999988764
No 145
>PLN02823 spermine synthase
Probab=98.48 E-value=2e-06 Score=72.59 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=62.3
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL 66 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~ 66 (169)
..+||.||+|.| +.+..+..+++.||+++++++.|++.++ .++|.|.+.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 468999999999 2233345689999999999999986431 467887777
Q ss_pred CCCCcccccchhhhcccHHHHH-HHHHhccCCcEEEEEe
Q psy13086 67 YPDPHFKRCKYKWRIINQNLLS-EYAYVLSEGGIVYTIT 104 (169)
Q Consensus 67 f~d~~f~~~h~~~~~~~~~~l~-~~~rvLkpGG~l~i~~ 104 (169)
.+||+-... ...+...++++ .+.+.|+|||.+++..
T Consensus 184 ~~dp~~~~~--~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 184 LADPVEGGP--CYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred CCCccccCc--chhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 666642110 11244578998 8999999999998764
No 146
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.48 E-value=4.4e-07 Score=71.60 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=55.9
Q ss_pred CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc----------------------------cccceE
Q psy13086 18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS----------------------------LYLKKM 63 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v 63 (169)
..+||||||++| +|...| +.+++.+|+++...+.|++.+. +++|.|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 578999999999 666665 5899999999999999987543 135555
Q ss_pred EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
++... +.. ....++.+.+.|+|||.+++-
T Consensus 126 FiDa~---------K~~--y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 126 FIDAD---------KRN--YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEST---------GGG--HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEccc---------ccc--hhhHHHHHhhhccCCeEEEEc
Confidence 54321 111 256888899999999999874
No 147
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.46 E-value=1.5e-06 Score=74.17 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE------------------eCCCCccccc
Q psy13086 18 KVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF------------------LYPDPHFKRC 75 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~------------------~f~d~~f~~~ 75 (169)
..+|||+|||+| ++...+..+++|||+++.+++.|++|+. ..++.+.+ .+-||-..
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~-- 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR-- 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC--
Confidence 468999999999 2222345789999999999999998764 11111111 11122111
Q ss_pred chhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086 76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH 116 (169)
Q Consensus 76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~ 116 (169)
=..+.+++.+. .++|++.+|++.+...++......
T Consensus 312 -----G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 312 -----GIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred -----CCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence 12356667775 489999999998877777755543
No 148
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.45 E-value=1.1e-06 Score=73.33 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=56.6
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC---------CCcccccch--hhh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP---------DPHFKRCKY--KWR 80 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~---------d~~f~~~h~--~~~ 80 (169)
+.+|||+|||+| +|. +..+|+|+|+|+.|++.|++++. ..++.+.+... +..||..-. -|.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 578999999999 444 45799999999999999988764 12222211100 011221000 001
Q ss_pred cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHH
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVS 115 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~ 115 (169)
=....+++.+ ..++|++.+|++++..........
T Consensus 252 G~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~ 285 (315)
T PRK03522 252 GIGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAH 285 (315)
T ss_pred CccHHHHHHH-HHcCCCeEEEEECCcccchhHHhh
Confidence 0123444444 447899999998877776664433
No 149
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.43 E-value=1.6e-06 Score=75.20 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=56.7
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC------------CCcccccch--
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP------------DPHFKRCKY-- 77 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~------------d~~f~~~h~-- 77 (169)
+.+|||+|||+| +|.. ...|+|+|+++.|++.|++++. ..++.+.+... +..||..-.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 578999999999 4443 2589999999999999998764 11222221111 111221000
Q ss_pred hhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHH
Q psy13086 78 KWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWI 113 (169)
Q Consensus 78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~ 113 (169)
-|.=....+++.+.+ |+|++.+|++++...+...+
T Consensus 371 Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~ 405 (431)
T TIGR00479 371 PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDL 405 (431)
T ss_pred CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHH
Confidence 000013567777654 89999999987755555433
No 150
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.42 E-value=5.4e-07 Score=68.08 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=41.5
Q ss_pred EEEeCCHHHHHHHHHHhc--c-----ccce-----EEEeCCCCcccccch---hhhc-ccHHHHHHHHHhccCCcEEEEE
Q psy13086 40 LGLEIRVKVSDYVIDEWS--L-----YLKK-----MFFLYPDPHFKRCKY---KWRI-INQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 40 ~GiDis~~~l~~a~~~~~--~-----~~d~-----v~~~f~d~~f~~~h~---~~~~-~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
+|+|+|++|++.|+++.+ . .++. ..+++++..||..-. .+.+ ....++++++|+|||||.|++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 599999999999976542 0 1111 123455555653210 0111 1367999999999999999987
Q ss_pred e
Q psy13086 104 T 104 (169)
Q Consensus 104 ~ 104 (169)
+
T Consensus 81 d 81 (160)
T PLN02232 81 D 81 (160)
T ss_pred E
Confidence 4
No 151
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.41 E-value=1e-07 Score=83.30 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=61.4
Q ss_pred CeEEEEcCccc-ccCcCCCCcEEEE-----eCCHHHHHHHHHH-hc---cccceEEEeCCCCcccccchhhhccc-----
Q psy13086 19 VEFVDVGCGKL-YLPMFPSTLILGL-----EIRVKVSDYVIDE-WS---LYLKKMFFLYPDPHFKRCKYKWRIIN----- 83 (169)
Q Consensus 19 ~~iLDiGCG~G-la~~~p~~~v~Gi-----Dis~~~l~~a~~~-~~---~~~d~v~~~f~d~~f~~~h~~~~~~~----- 83 (169)
.++||||||+| .+.+.-+.+|+.+ |..+..++.|.+| ++ +.+..-.++||+..||..|..+-++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 57999999999 4444333344444 4444578888776 44 33434468999999998887664432
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q psy13086 84 QNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.-+|-++-|+|+|||.|+++.
T Consensus 199 g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 199 GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cceeehhhhhhccCceEEecC
Confidence 458899999999999999975
No 152
>PLN02476 O-methyltransferase
Probab=98.41 E-value=1.2e-06 Score=72.10 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=55.0
Q ss_pred CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCC--------------Ccccc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPD--------------PHFKR 74 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d--------------~~f~~ 74 (169)
+..+|||||||+| +|...| +..++.+|.++++++.|++++. +--+.|.+...+ ..||-
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 4678999999999 555544 5689999999999999998765 111122221110 11111
Q ss_pred c---chhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086 75 C---KYKWRIINQNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 75 ~---h~~~~~~~~~~l~~~~rvLkpGG~l~i 102 (169)
. ..+.. ....++.+.+.|+|||.+++
T Consensus 198 VFIDa~K~~--Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 198 AFVDADKRM--YQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEECCCHHH--HHHHHHHHHHhcCCCcEEEE
Confidence 0 01111 25789999999999999876
No 153
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.37 E-value=6.5e-07 Score=71.22 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=29.0
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
..+||..|||.| ||.+ +.+|+|+|+|+.+++.|.+
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~ 77 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFE 77 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHH
Confidence 578999999999 5554 5799999999999999843
No 154
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.34 E-value=2e-06 Score=68.87 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=53.5
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------cccceEEEe-CCC-----
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------LYLKKMFFL-YPD----- 69 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------~~~d~v~~~-f~d----- 69 (169)
++.+||+.|||.| ||.. +..|+|+|+|+.+++.+.++.. ..++.+.-. |.-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3579999999999 5543 5689999999999999865311 111111111 110
Q ss_pred --Cccccc------chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 70 --PHFKRC------KYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 70 --~~f~~~------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..||.. ++...-.-.+.++.+.++|+|||.+++.+
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 123321 00000011579999999999999998875
No 155
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.28 E-value=1.7e-06 Score=69.09 Aligned_cols=84 Identities=18% Similarity=0.091 Sum_probs=53.4
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCc--ccc------cchhhhcccH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPH--FKR------CKYKWRIINQ 84 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~--f~~------~h~~~~~~~~ 84 (169)
..+|||||+|+| +++++|+.+++.+|. +.+++.+++ ...+..+--.|-++. .+. .|.-..-...
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~ 177 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--ADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCV 177 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--TTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHH
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--ccccccccccHHhhhccccceeeehhhhhcchHHHH
Confidence 568999999999 778999999999997 888888876 211111111111221 221 1110010135
Q ss_pred HHHHHHHHhccCC--cEEEEEe
Q psy13086 85 NLLSEYAYVLSEG--GIVYTIT 104 (169)
Q Consensus 85 ~~l~~~~rvLkpG--G~l~i~~ 104 (169)
.+|+++++.|+|| |+|+|..
T Consensus 178 ~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 178 KILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp HHHHHHHHHSEECTTEEEEEEE
T ss_pred HHHHHHHHHhCCCCCCeEEEEe
Confidence 7999999999999 9999974
No 156
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.26 E-value=6.2e-06 Score=64.75 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=31.5
Q ss_pred CCeEEEEcCccc---c--cCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL---Y--LPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G---l--a~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+.++||+|||+| + +.+. ..+++++|+++.+++.|++++.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~ 97 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLA 97 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHH
Confidence 578999999999 2 1222 3699999999999999988764
No 157
>KOG1331|consensus
Probab=98.26 E-value=8.4e-07 Score=72.69 Aligned_cols=86 Identities=22% Similarity=0.255 Sum_probs=62.9
Q ss_pred CCeEEEEcCccc-ccCcCCCCcEEEEeCCHHHHHHHHHHhc---cccceEEEeCCCCcccc------cchh-hhcccHHH
Q psy13086 18 KVEFVDVGCGKL-YLPMFPSTLILGLEIRVKVSDYVIDEWS---LYLKKMFFLYPDPHFKR------CKYK-WRIINQNL 86 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~v~~~f~d~~f~~------~h~~-~~~~~~~~ 86 (169)
+..+||+|||.| ....+|...++|.|++...+.-|++.-. .-.|++.++++++.|+. .||. .+.-...+
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~ 125 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERA 125 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHH
Confidence 678999999999 7777799999999999999988865321 22445556777777764 2321 11112689
Q ss_pred HHHHHHhccCCcEEEEE
Q psy13086 87 LSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 87 l~~~~rvLkpGG~l~i~ 103 (169)
++++.|+|+|||...+-
T Consensus 126 l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 126 LEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHhcCCCceEEE
Confidence 99999999999986653
No 158
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.26 E-value=1.1e-06 Score=73.80 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=35.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..++||||||+| ++.+.++++++|+|+++.+++.|++++.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~ 159 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIIS 159 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 578999999999 6667788999999999999999998765
No 159
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.24 E-value=1.2e-06 Score=69.04 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=41.1
Q ss_pred CCeEEEEcCccc-ccCcCCC-CcEEEEeCCHHH--HHHH-HHHhc---cccceEEEeCCCCcccccchhhhcccHHHHHH
Q psy13086 18 KVEFVDVGCGKL-YLPMFPS-TLILGLEIRVKV--SDYV-IDEWS---LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSE 89 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~~~p~-~~v~GiDis~~~--l~~a-~~~~~---~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~ 89 (169)
...|-|+|||.+ +|+..++ .+|.-.|+-..- +-.| -.+++ +++|.+....+---- ....+++|
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---------n~~~fi~E 143 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGT---------NWPDFIRE 143 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS----------HHHHHHH
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCC---------CcHHHHHH
Confidence 578999999999 7765543 345555554310 0000 01222 567765443321100 12689999
Q ss_pred HHHhccCCcEEEEEe
Q psy13086 90 YAYVLSEGGIVYTIT 104 (169)
Q Consensus 90 ~~rvLkpGG~l~i~~ 104 (169)
..|+|||||.|.|+.
T Consensus 144 A~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 144 ANRVLKPGGILKIAE 158 (219)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHheeccCcEEEEEE
Confidence 999999999999984
No 160
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.20 E-value=1.2e-05 Score=65.06 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------c-ccceEEE
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------L-YLKKMFF 65 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~-~~d~v~~ 65 (169)
..+||=||-|.| +.+..+-.+++.||+++.+++.|++-++ . .+|.|.+
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 678999999999 4444445799999999999999975211 4 6888887
Q ss_pred eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC----hHHHHHHHHHHhc
Q psy13086 66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV----KDLHDWIVSHFTE 119 (169)
Q Consensus 66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~----~~~~~~~~~~~~~ 119 (169)
...||.-... .+...++++.+.++|+|||.+++.... +.....+...+..
T Consensus 157 D~~dp~~~~~----~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~ 210 (246)
T PF01564_consen 157 DLTDPDGPAP----NLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRS 210 (246)
T ss_dssp ESSSTTSCGG----GGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHT
T ss_pred eCCCCCCCcc----cccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHH
Confidence 7776542221 156789999999999999999987522 2333444444443
No 161
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=7e-06 Score=63.79 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCeEEEEcCccc---ccC-cCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL---YLP-MFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~-~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+.+|+|+||||| ++. ......|+|||+++++++.|++|..
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~ 89 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE 89 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH
Confidence 567999999999 333 3444699999999999999998765
No 162
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.17 E-value=7.7e-06 Score=68.62 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=57.0
Q ss_pred CCeEEEEcCccc---------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccce-----EEEeCCCC--cccc--cchh
Q psy13086 18 KVEFVDVGCGKL---------YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKK-----MFFLYPDP--HFKR--CKYK 78 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~-----v~~~f~d~--~f~~--~h~~ 78 (169)
...++|+|||+| +........+++||||..+++.+.+++. ..+.. +.-.|.++ |... ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 568999999999 2222235789999999999999988776 33332 22233221 0000 0001
Q ss_pred hhcc--------------cHHHHHHHHH-hccCCcEEEEEeC
Q psy13086 79 WRII--------------NQNLLSEYAY-VLSEGGIVYTITD 105 (169)
Q Consensus 79 ~~~~--------------~~~~l~~~~r-vLkpGG~l~i~~d 105 (169)
++++ ...+|+++++ .|+|||.|++..|
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 1111 2579999999 9999999999755
No 163
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.17 E-value=2e-06 Score=70.32 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++.+|||||||+| ++.+. .+++|+|+++.|++.+++++.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc
Confidence 3578999999999 55554 389999999999999988763
No 164
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.14 E-value=7.9e-06 Score=65.49 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDY 51 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~ 51 (169)
+.++|||||||| +++. +...|+|||++.+|+..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 678999999999 4443 44689999999988875
No 165
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.11 E-value=4.3e-06 Score=65.84 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=53.4
Q ss_pred eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc----eEEEeCCCC-c------------ccc--
Q psy13086 20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK----KMFFLYPDP-H------------FKR-- 74 (169)
Q Consensus 20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d----~v~~~f~d~-~------------f~~-- 74 (169)
+||||||||| +|+.+|..++.--|++...+...+..+. ..++ -+.+....+ | +|.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999 8899999999999999987654443322 1111 111211111 1 121
Q ss_pred ----cchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 75 ----CKYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 75 ----~h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
.|-..--....+++...++|+|||.|++-
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 12111112367999999999999999884
No 166
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.10 E-value=4.5e-06 Score=65.45 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=26.9
Q ss_pred CCeEEEEcCccc---------ccC----cCC-CCcEEEEeCCHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL---------YLP----MFP-STLILGLEIRVKVSDYVID 54 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~----~~p-~~~v~GiDis~~~l~~a~~ 54 (169)
.-+|+.+||+|| +.. ..+ +.+++|.|+|+.+++.|++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 578999999999 222 122 4699999999999999974
No 167
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.08 E-value=3.9e-05 Score=63.36 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=66.4
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEeC
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFLY 67 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~f 67 (169)
.+||=||-|.| +.+..+..+++.|||++++++.|++-++ ..+|.|.+..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 48999999999 4455566799999999999999987433 4578877776
Q ss_pred CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK 107 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~ 107 (169)
.||. . ....+....|++.+++.|+++|.+..++..+
T Consensus 158 tdp~-g---p~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 158 TDPV-G---PAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred CCCC-C---cccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 6661 1 1234567899999999999999999986443
No 168
>PRK04148 hypothetical protein; Provisional
Probab=98.08 E-value=1e-05 Score=59.75 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=31.4
Q ss_pred CCeEEEEcCccc--ccCc--CCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL--YLPM--FPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G--la~~--~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
+.++||||||+| +|.. ..+..|+|+|+++..++.|+++.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG 59 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC
Confidence 578999999999 3322 23579999999999999998763
No 169
>KOG3420|consensus
Probab=98.07 E-value=1.6e-06 Score=64.99 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=36.9
Q ss_pred ccCCCCCCCCCCCCCeEEEEcCccc-c--cCcCC-CCcEEEEeCCHHHHHHHHHHhc
Q psy13086 5 PLYPELKDPTCEKKVEFVDVGCGKL-Y--LPMFP-STLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 5 ~~f~~~~~~~~~~~~~iLDiGCG~G-l--a~~~p-~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..+|+.+ +.+++|+|||.| | +-.++ ...++|+||.+.+++.+++|..
T Consensus 42 ~TygdiE------gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNae 92 (185)
T KOG3420|consen 42 NTYGDIE------GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAE 92 (185)
T ss_pred hhhcccc------CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchH
Confidence 3466665 688999999999 3 33444 4689999999999999988754
No 170
>KOG3191|consensus
Probab=98.06 E-value=3e-05 Score=60.03 Aligned_cols=88 Identities=19% Similarity=0.330 Sum_probs=57.4
Q ss_pred CCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEe--C-CC
Q psy13086 18 KVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFL--Y-PD 69 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~--f-~d 69 (169)
...+||||||+| |++. -|++.+++.|+++.+++..++-+. +++|.+..+ | |.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 467999999999 4443 378899999999998886543211 567665432 1 11
Q ss_pred C-cccccc-----h----hhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 70 P-HFKRCK-----Y----KWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 70 ~-~f~~~h-----~----~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
+ .....+ | .-+-+...++..+-.+|.|.|.||+..-
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 1 111000 1 1122457789999999999999999763
No 171
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.05 E-value=2e-05 Score=63.88 Aligned_cols=84 Identities=13% Similarity=0.031 Sum_probs=54.8
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCC---------------Cccc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPD---------------PHFK 73 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d---------------~~f~ 73 (169)
+..+|||||+++| +|... ++.+++.+|+++...+.|++.+. +..+.|.+...+ ..||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 3578999999999 55554 46799999999999999988764 111222221110 1111
Q ss_pred c---cchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086 74 R---CKYKWRIINQNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 74 ~---~h~~~~~~~~~~l~~~~rvLkpGG~l~i 102 (169)
- -+.+.. ....++.+.+.|+|||.+++
T Consensus 159 ~iFiDadK~~--Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFVDADKDN--YINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEecCCHHH--hHHHHHHHHHhcCCCeEEEE
Confidence 1 011111 25688888999999999876
No 172
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.04 E-value=2.1e-05 Score=67.46 Aligned_cols=91 Identities=13% Similarity=0.052 Sum_probs=56.6
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCC--------CcccccchhhhcccH
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPD--------PHFKRCKYKWRIINQ 84 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d--------~~f~~~h~~~~~~~~ 84 (169)
.+|||++||+| ++...+...|+++|+++.+++.+++|+. +.++.+.+...| ..||......-=...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~~ 138 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGSPA 138 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCCcH
Confidence 58999999999 4444454589999999999999998875 223322111111 112211000000024
Q ss_pred HHHHHHHHhccCCcEEEEE-eCChHH
Q psy13086 85 NLLSEYAYVLSEGGIVYTI-TDVKDL 109 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~-~d~~~~ 109 (169)
.++....+.+++||.++++ +|...+
T Consensus 139 ~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 139 PFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred HHHHHHHHHhcCCCEEEEEecCchhh
Confidence 6888877889999999997 354433
No 173
>KOG3045|consensus
Probab=98.04 E-value=4.8e-06 Score=67.71 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=46.4
Q ss_pred CCCeEEEEcCccc-ccCcCCCCcEEEEeCCHH---HHHHHHHHhc---cccceEEEeCCCCcccccchhhhcccHHHHHH
Q psy13086 17 KKVEFVDVGCGKL-YLPMFPSTLILGLEIRVK---VSDYVIDEWS---LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSE 89 (169)
Q Consensus 17 ~~~~iLDiGCG~G-la~~~p~~~v~GiDis~~---~l~~a~~~~~---~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~ 89 (169)
++..|-|+|||-+ +|..-+. .|.-+|+-.. ++..=..+++ .++|.+..+.+---- ....|++|
T Consensus 180 ~~~vIaD~GCGEakiA~~~~~-kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt---------n~~df~kE 249 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSERH-KVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGT---------NLADFIKE 249 (325)
T ss_pred CceEEEecccchhhhhhcccc-ceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcc---------cHHHHHHH
Confidence 3678999999999 7753322 4555554321 1110011233 566654433221100 12689999
Q ss_pred HHHhccCCcEEEEEe
Q psy13086 90 YAYVLSEGGIVYTIT 104 (169)
Q Consensus 90 ~~rvLkpGG~l~i~~ 104 (169)
..|+|||||.++|+.
T Consensus 250 a~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 250 ANRILKPGGLLYIAE 264 (325)
T ss_pred HHHHhccCceEEEEe
Confidence 999999999999984
No 174
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.01 E-value=1.4e-05 Score=61.22 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------cccceEEEeCCCCc---------cccc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------LYLKKMFFLYPDPH---------FKRC 75 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------~~~d~v~~~f~d~~---------f~~~ 75 (169)
++.+|||||||+| ++...+...|+..|.++ .++.++.|+. ..++...+.+.++. ||..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 3679999999999 33344678999999999 8888887765 22222223332211 1110
Q ss_pred c-----hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 76 K-----YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 76 h-----~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
. +. .-..+.+++-+.++|+|+|.++++.
T Consensus 124 lasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 124 LASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEES--S--GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEecccch-HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 0 00 0123789999999999999988775
No 175
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.00 E-value=2.5e-05 Score=63.55 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH-hc-----------cccceEEE-eCCCCcccccchh
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE-WS-----------LYLKKMFF-LYPDPHFKRCKYK 78 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~-~~-----------~~~d~v~~-~f~d~~f~~~h~~ 78 (169)
+..++||||.|.| ++..+ .+|.+-|+|..|....+++ +. .++|.|.. +.-|- +.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDR-----c~- 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDR-----CD- 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhc-----cC-
Confidence 3578999999999 65555 4699999999998887664 11 24554432 11111 11
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
-...+|+.+++.|+|+|+++++.
T Consensus 166 ---~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 166 ---RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---CHHHHHHHHHHHhCCCCEEEEEE
Confidence 12479999999999999999874
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.99 E-value=8.4e-06 Score=66.17 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++.+|||||||+| +++. ..+++|+|+++.|++.+++++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhc
Confidence 4678999999999 4444 3589999999999999988764
No 177
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.98 E-value=5.4e-05 Score=64.27 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=57.1
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe--------------------------
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------------------------- 66 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------------------------- 66 (169)
.++||+|||+| ++... ..|+|||+++.|++.|++|+. ..++.+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 36999999999 55443 489999999999999998865 223222211
Q ss_pred -------CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086 67 -------YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH 116 (169)
Q Consensus 67 -------f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~ 116 (169)
+-||- |.=..+.+++.+. +|++.+|++++..+++..+...
T Consensus 277 ~~~~d~v~lDPP-------R~G~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L 323 (353)
T TIGR02143 277 SYNCSTIFVDPP-------RAGLDPDTCKLVQ---AYERILYISCNPETLKANLEQL 323 (353)
T ss_pred cCCCCEEEECCC-------CCCCcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHH
Confidence 11111 0001245666554 4899999999888887766544
No 178
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.98 E-value=4.2e-05 Score=59.50 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=31.4
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+.++||++||+| ++.+. ...+++||.++.+++.+++++.
T Consensus 50 g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~ 93 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLA 93 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHH
Confidence 578999999999 33332 2489999999999999987754
No 179
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.98 E-value=1.1e-05 Score=66.69 Aligned_cols=37 Identities=5% Similarity=-0.006 Sum_probs=29.3
Q ss_pred CCeEEEEcCccc---------ccCcCC----CCcEEEEeCCHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL---------YLPMFP----STLILGLEIRVKVSDYVID 54 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~~~p----~~~v~GiDis~~~l~~a~~ 54 (169)
.-+|+..||.|| +.+..+ +.+|+|.|||..+|+.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 468999999999 222221 4689999999999999974
No 180
>PRK00536 speE spermidine synthase; Provisional
Probab=97.97 E-value=6.3e-05 Score=61.50 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=57.6
Q ss_pred CCeEEEEcCccc-ccC---cCCCCcEEEEeCCHHHHHHHHHHhc---cccce--EE--EeCCC---Ccccccchhhhccc
Q psy13086 18 KVEFVDVGCGKL-YLP---MFPSTLILGLEIRVKVSDYVIDEWS---LYLKK--MF--FLYPD---PHFKRCKYKWRIIN 83 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~---~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~--v~--~~f~d---~~f~~~h~~~~~~~ 83 (169)
..+||=||-|.| .++ ++|. +|+-|||++.+++.+++-++ +.+|. +. ..+.+ ..||..- ...+..
T Consensus 73 pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVII-vDs~~~ 150 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLII-CLQEPD 150 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEE-EcCCCC
Confidence 588999999999 222 3454 99999999999999998554 11111 00 11110 1222211 011134
Q ss_pred HHHHHHHHHhccCCcEEEEEeCChH
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDVKD 108 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~~~ 108 (169)
+.+.+.++|.|+|||.++.++..+.
T Consensus 151 ~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 151 IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 6899999999999999999865443
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.94 E-value=2e-05 Score=64.55 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=30.0
Q ss_pred CCeEEEEcCccc---------ccCcCC-----CCcEEEEeCCHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL---------YLPMFP-----STLILGLEIRVKVSDYVI 53 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~~~p-----~~~v~GiDis~~~l~~a~ 53 (169)
.-+|+-+||+|| +.+..+ ..+|+|.|||..+|+.|+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 578999999999 334443 479999999999999996
No 182
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.93 E-value=1.4e-05 Score=62.94 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP 70 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~ 70 (169)
++.+|||+-||-| +|+..+...|+++|+++.+++.+++++. ..+|.+.+..|..
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~~ 180 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPES 180 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TSS
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChHH
Confidence 3689999999999 5554566789999999999999988765 2223333333221
Q ss_pred cccccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086 71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i 102 (169)
...++..+.+.+|+||.+.+
T Consensus 181 ------------~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 181 ------------SLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp ------------GGGGHHHHHHHEEEEEEEEE
T ss_pred ------------HHHHHHHHHHHhcCCcEEEC
Confidence 24689999999999998864
No 183
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.93 E-value=3.6e-05 Score=59.29 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=51.6
Q ss_pred CCeEEEEcCccc-----ccCcCCCC---------cEEEEeCCHHHHHHHHHHhc----------------------cccc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPST---------LILGLEIRVKVSDYVIDEWS----------------------LYLK 61 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~---------~v~GiDis~~~l~~a~~~~~----------------------~~~d 61 (169)
+..+||-=||+| .+...++. .++|+|+++++++.|++|+. +++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 578999999999 12222222 39999999999999998865 1222
Q ss_pred eEEEeCCCCcccccch-hh--hcccHHHHHHHHHhccCCcEEEEEeCChHHH
Q psy13086 62 KMFFLYPDPHFKRCKY-KW--RIINQNLLSEYAYVLSEGGIVYTITDVKDLH 110 (169)
Q Consensus 62 ~v~~~f~d~~f~~~h~-~~--~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~ 110 (169)
.|.. ||-+..+.- .. .-....+++++.++|++ ..+++.+..+.+.
T Consensus 109 ~Ivt---nPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~ 156 (179)
T PF01170_consen 109 AIVT---NPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELE 156 (179)
T ss_dssp EEEE---E--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHH
T ss_pred EEEE---CcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHH
Confidence 2211 111111110 00 11246799999999999 5555555555443
No 184
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.92 E-value=0.00015 Score=63.78 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=64.7
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP 68 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~ 68 (169)
++.+|||++||.| +|... ....++++|+++.-++.+++++. ..+|.|.+.-|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 4689999999999 55554 34699999999998888877654 23444443221
Q ss_pred C---Cccccc-----chh----hhc--ccHHHHHHHHHhccCCcEEEEEe--CChHHHHHHHHH-HhcCCC
Q psy13086 69 D---PHFKRC-----KYK----WRI--INQNLLSEYAYVLSEGGIVYTIT--DVKDLHDWIVSH-FTEHPL 122 (169)
Q Consensus 69 d---~~f~~~-----h~~----~~~--~~~~~l~~~~rvLkpGG~l~i~~--d~~~~~~~~~~~-~~~~~~ 122 (169)
= ..+... .+. .++ .+.++|....+.|||||+++-+| -.+...+...+. +.+|+.
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 0 011000 000 000 24679999999999999998775 333333333332 344654
No 185
>KOG1661|consensus
Probab=97.91 E-value=2.1e-05 Score=62.16 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcCccc-----ccCc--CCCCcEEEEeCCHHHHHHHHHHhccc------cceE-----EE-------eCCC
Q psy13086 15 CEKKVEFVDVGCGKL-----YLPM--FPSTLILGLEIRVKVSDYVIDEWSLY------LKKM-----FF-------LYPD 69 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G-----la~~--~p~~~v~GiDis~~~l~~a~~~~~~~------~d~v-----~~-------~f~d 69 (169)
+.++.+.||||.|+| .+.. -+.....|||.-+++++++++++... .+.. .+ -+++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 456789999999999 2222 13455699999999999999987611 1110 01 1111
Q ss_pred -CcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 70 -PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 70 -~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..+|..|--. -.++..+++...|+|||.+++--
T Consensus 160 ~a~YDaIhvGA--aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGA--AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEcc--CccccHHHHHHhhccCCeEEEee
Confidence 1123222111 13567888999999999998843
No 186
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.91 E-value=2.3e-05 Score=66.06 Aligned_cols=88 Identities=15% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------cccceEEEeCCCCccccc---------
Q psy13086 18 KVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS----------LYLKKMFFLYPDPHFKRC--------- 75 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~----------~~~d~v~~~f~d~~f~~~--------- 75 (169)
+..|||==|||| +....=+++++|+|++..|++-|+.|+. ...|+-.+++++..++..
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrs 277 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRS 277 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcc
Confidence 568999999999 3444557899999999999999998876 111333444555444421
Q ss_pred c-hhhh---cccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 76 K-YKWR---IINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 76 h-~~~~---~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
. .+.. -...++|+.++++||+||.+.|.++
T Consensus 278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 278 TKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 0 0000 0136799999999999999999987
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.87 E-value=1.8e-05 Score=63.87 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=32.4
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++.+|||||||+| ++.+.+ .++|+|+++.|++.+++++.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC
Confidence 3678999999999 555543 59999999999999987754
No 188
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.86 E-value=8.2e-05 Score=51.51 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=52.5
Q ss_pred EEEEcCccc-c---cCcCCC-CcEEEEeCCHHHHHHHHHHh--ccc--cceEE-------EeCCC-Ccccccchhhhcc-
Q psy13086 21 FVDVGCGKL-Y---LPMFPS-TLILGLEIRVKVSDYVIDEW--SLY--LKKMF-------FLYPD-PHFKRCKYKWRII- 82 (169)
Q Consensus 21 iLDiGCG~G-l---a~~~p~-~~v~GiDis~~~l~~a~~~~--~~~--~d~v~-------~~f~d-~~f~~~h~~~~~~- 82 (169)
++|+|||+| . +...+. ..++|+|++..|+..++.+. ... ++.+. +.+.+ ..++.. ......
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence 999999999 2 233232 48999999999998865443 100 11111 12222 134432 111111
Q ss_pred ---cHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 83 ---NQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 83 ---~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
....+.++.++|+|+|.+.+....
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 268999999999999999987643
No 189
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.86 E-value=0.00014 Score=61.89 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=31.2
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
.++||++||+| ++... ..|+|||+|+.|++.|++|+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHH
Confidence 46999999999 44443 489999999999999998765
No 190
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.80 E-value=0.00013 Score=62.60 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=56.7
Q ss_pred CeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCC
Q psy13086 19 VEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDP 70 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~ 70 (169)
.+|||+-||+| ++.+.++ ..|+++|+++.+++.+++|+. ..+|.|++ ||
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl---DP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI---DP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe---CC
Confidence 58999999999 4444333 589999999999999988764 12343332 44
Q ss_pred cccccchhhhcccHHHHHHHHHhccCCcEEEEE-eCChH
Q psy13086 71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI-TDVKD 108 (169)
Q Consensus 71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~-~d~~~ 108 (169)
|.. ...++..+.+.+++||.++++ ||...
T Consensus 123 -fGs--------~~~fld~al~~~~~~glL~vTaTD~~~ 152 (374)
T TIGR00308 123 -FGT--------PAPFVDSAIQASAERGLLLVTATDTSA 152 (374)
T ss_pred -CCC--------cHHHHHHHHHhcccCCEEEEEecccHH
Confidence 321 147999999999999999997 55443
No 191
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.78 E-value=3.9e-05 Score=67.16 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=46.3
Q ss_pred CCeEEEEcCccc-cc--------CcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCCC------C---------c
Q psy13086 18 KVEFVDVGCGKL-YL--------PMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYPD------P---------H 71 (169)
Q Consensus 18 ~~~iLDiGCG~G-la--------~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~d------~---------~ 71 (169)
...|||||||+| |+ ......+|++||.|+.++..+++++. ... +.|.+...| | +
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 578999999999 22 12234699999999988876655432 111 122221111 0 0
Q ss_pred ccccchhhhcccHHHHHHHHHhccCCcEEE
Q psy13086 72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVY 101 (169)
Q Consensus 72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~ 101 (169)
....- ..-..++.|....|.|||||.++
T Consensus 267 LGsfg--~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFG--DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTB--TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCcc--ccccCHHHHHHHHhhcCCCCEEe
Confidence 00000 00124678899999999999773
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.75 E-value=0.00013 Score=56.61 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=51.7
Q ss_pred eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHH---HHhccccceEEEeC-------CCCcccccchhhhcc-c
Q psy13086 20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVI---DEWSLYLKKMFFLY-------PDPHFKRCKYKWRII-N 83 (169)
Q Consensus 20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~---~~~~~~~d~v~~~f-------~d~~f~~~h~~~~~~-~ 83 (169)
+++|||+|.| +|-.+|+.+++-+|.+.+-+...+ ..+. ++.+.... ....|+..- .|.+. .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~--L~nv~v~~~R~E~~~~~~~fd~v~-aRAv~~l 127 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG--LSNVEVINGRAEEPEYRESFDVVT-ARAVAPL 127 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHHTTTTT-EEEEE-EESSSSH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC--CCCEEEEEeeecccccCCCccEEE-eehhcCH
Confidence 7999999999 888899999999999987555443 3332 12121110 111222111 11111 2
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q psy13086 84 QNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..+++-+...|++||.+++.-
T Consensus 128 ~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 128 DKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEc
Confidence 678999999999999998864
No 193
>KOG1499|consensus
Probab=97.73 E-value=4e-05 Score=64.49 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 16 EKKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 16 ~~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
-++..||||||||| .+.......|+|||.|.-+ +.|++-+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv 102 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIV 102 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHH
Confidence 34688999999999 2333345699999987644 7776543
No 194
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.71 E-value=3e-05 Score=64.33 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=32.1
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++.+|||||||+| ++.. ...++|+|+++.|++.+++++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~ 79 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQ 79 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHH
Confidence 3678999999999 3333 3589999999999999988754
No 195
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.70 E-value=4.1e-05 Score=55.93 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=33.2
Q ss_pred eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++||||||.| ++...|..+++++|+++.+++.+++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999 6667788899999999999999988764
No 196
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.69 E-value=0.00048 Score=59.38 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCeEEEEcCccc---ccCcCCCC-cEEEEeCCHHHHHHHHHHhc---------------------------cccceEEEe
Q psy13086 18 KVEFVDVGCGKL---YLPMFPST-LILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFFL 66 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~p~~-~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~~ 66 (169)
+.+|||+=|=|| ++....++ ++++||+|..+++.|++|+. ..+|.|.+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil- 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL- 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE-
Confidence 678999999999 44444555 99999999999999998754 36776654
Q ss_pred CCCCcccccch-hhhc--ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 67 YPDPHFKRCKY-KWRI--INQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 67 f~d~~f~~~h~-~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
.+|.|..... ..+. ....++..+.++|+|||+++++|..
T Consensus 297 -DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 297 -DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred -CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 3345543110 0010 1357899999999999999998753
No 197
>KOG2940|consensus
Probab=97.59 E-value=7.5e-05 Score=60.07 Aligned_cols=85 Identities=8% Similarity=0.087 Sum_probs=60.1
Q ss_pred CCeEEEEcCccc-ccCcC---CCCcEEEEeCCHHHHHHHHHHhc-------cccceEEEeCCCCcccc------cchhhh
Q psy13086 18 KVEFVDVGCGKL-YLPMF---PSTLILGLEIRVKVSDYVIDEWS-------LYLKKMFFLYPDPHFKR------CKYKWR 80 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~~~---p~~~v~GiDis~~~l~~a~~~~~-------~~~d~v~~~f~d~~f~~------~h~~~~ 80 (169)
.+.++|||||-| +++.. .-.+++-+|.|..|++.++.--. -..|.-++.|.+.++|. .||...
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 367999999999 43322 12489999999999999875311 23344455666666663 466554
Q ss_pred cccHHHHHHHHHhccCCcEEEEEe
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.+.-+.+++..|||+|.|+-+.
T Consensus 153 --LPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 153 --LPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred --CchHHHHHHHhcCCCccchhHH
Confidence 3778889999999999997553
No 198
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00077 Score=57.38 Aligned_cols=111 Identities=13% Similarity=0.199 Sum_probs=66.7
Q ss_pred CCCeEEEEcCccc-----ccCcCC--CCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEE
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFP--STLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFF 65 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p--~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~ 65 (169)
++.+|||+.++.| +|+..+ ...|+++|+|+.=++..++|+. ..+|.|.+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 4689999999999 665544 3567999999987776665543 12555543
Q ss_pred eCC---------CCcccccchhh-----hcccHHHHHHHHHhccCCcEEEEEe--CChHHHHH-HHHHHhcCCCceecC
Q psy13086 66 LYP---------DPHFKRCKYKW-----RIINQNLLSEYAYVLSEGGIVYTIT--DVKDLHDW-IVSHFTEHPLFVECD 127 (169)
Q Consensus 66 ~f~---------d~~f~~~h~~~-----~~~~~~~l~~~~rvLkpGG~l~i~~--d~~~~~~~-~~~~~~~~~~f~~~~ 127 (169)
.-| +|..+...... .-.+.++|+...++|||||.|+-+| -.+...+. ....+.+++.|+..+
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEP 314 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeec
Confidence 211 11100000000 0125789999999999999998875 22222222 223445677776654
No 199
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.55 E-value=0.00028 Score=56.07 Aligned_cols=126 Identities=14% Similarity=0.109 Sum_probs=67.7
Q ss_pred CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhcc---ccceEE---E-eC-CCC-cccc-------
Q psy13086 17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSL---YLKKMF---F-LY-PDP-HFKR------- 74 (169)
Q Consensus 17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~---~~d~v~---~-~f-~d~-~f~~------- 74 (169)
+..+.||.|+|-| |...+ ..|.-||+.++.++.|++.+.. .+-.++ + .| |.+ ..|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 3678999999999 45554 5899999999999999976541 111111 0 01 111 1111
Q ss_pred cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHc
Q psy13086 75 CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRN 154 (169)
Q Consensus 75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~ 154 (169)
-|.. ....-++|+.+...|+|+|.+++..+... + .+......+. .-.++...|.+.+.+.
T Consensus 133 ghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~-----------~-~~~~~D~~Ds-------SvTRs~~~~~~lF~~A 192 (218)
T PF05891_consen 133 GHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSS-----------S-GFDEFDEEDS-------SVTRSDEHFRELFKQA 192 (218)
T ss_dssp GGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEES-----------S-SEEEEETTTT-------EEEEEHHHHHHHHHHC
T ss_pred ccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCC-----------C-CCcccCCccC-------eeecCHHHHHHHHHHc
Confidence 1111 11125799999999999999999743221 1 1211111110 0124456677777777
Q ss_pred CCCeEEEEEE
Q psy13086 155 KGEKFCAVFR 164 (169)
Q Consensus 155 g~~i~~~~~~ 164 (169)
|..+.....+
T Consensus 193 Gl~~v~~~~Q 202 (218)
T PF05891_consen 193 GLRLVKEEKQ 202 (218)
T ss_dssp T-EEEEEEE-
T ss_pred CCEEEEeccc
Confidence 8777655444
No 200
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.55 E-value=0.00016 Score=60.13 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=33.5
Q ss_pred CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~ 56 (169)
+..+||.+||+| ++...| +..|+|+|.++.|++.|++++
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 579999999999 666665 689999999999999998654
No 201
>KOG1269|consensus
Probab=97.51 E-value=9.4e-05 Score=63.13 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=58.3
Q ss_pred CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHH-----hcc--cc---ceEEEeCCCCcccccchhhhc-
Q psy13086 17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDE-----WSL--YL---KKMFFLYPDPHFKRCKYKWRI- 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~-----~~~--~~---d~v~~~f~d~~f~~~h~~~~~- 81 (169)
....++|+|||-| +-..+..+.++|+|.++--+..+... +.. .+ |....+|+|..|+........
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 3457999999999 45567788999999999766655432 111 11 111246777777643211111
Q ss_pred ---ccHHHHHHHHHhccCCcEEEEE
Q psy13086 82 ---INQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 82 ---~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
....+++|++|++||||.++..
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cCCcHHHHHHHHhcccCCCceEEeH
Confidence 1267999999999999999874
No 202
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.51 E-value=0.00089 Score=51.37 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=56.8
Q ss_pred CCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086 18 KVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP 70 (169)
Q Consensus 18 ~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~ 70 (169)
+.-|||+|.||| |+...++..++.||.|++-+....+..+ ..+|.+..-.|--
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll 128 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL 128 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccc
Confidence 457999999999 7777788899999999998888776543 2334333222111
Q ss_pred cccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.|- .++ .-+.++++...|.+||.++--+
T Consensus 129 ~~P---~~~---~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 129 NFP---MHR---RIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cCc---HHH---HHHHHHHHHHhcCCCCeEEEEE
Confidence 111 111 2479999999999999998755
No 203
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.48 E-value=0.00019 Score=56.63 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
+....+|||||.| .|...+-...+|||+.+...+.|+.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~ 84 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEE 84 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHH
Confidence 4789999999999 3333333459999999987777653
No 204
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.47 E-value=9.9e-05 Score=59.40 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=56.7
Q ss_pred CCeEEEEcCccc---ccCcCCCC-cEEEEeCCHHHHHHHHHH----------hc---------------cccceEEEeCC
Q psy13086 18 KVEFVDVGCGKL---YLPMFPST-LILGLEIRVKVSDYVIDE----------WS---------------LYLKKMFFLYP 68 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~p~~-~v~GiDis~~~l~~a~~~----------~~---------------~~~d~v~~~f~ 68 (169)
..+|||...|-| +...-.++ .|+-||.++++++.|.-| +. .++|.|. +.
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi--HD 212 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII--HD 212 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe--eC
Confidence 578999999999 33333455 999999999999988532 11 3344331 22
Q ss_pred CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 69 DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 69 d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
.|-|... -++.+.+|.+|++|+|||||.++.-+-
T Consensus 213 PPRfS~A---geLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 213 PPRFSLA---GELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred CCccchh---hhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 2323211 244568899999999999999988653
No 205
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.42 E-value=0.00049 Score=56.98 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=56.5
Q ss_pred CCCeEEEEcCccc---c-cCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086 17 KKVEFVDVGCGKL---Y-LPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL 66 (169)
Q Consensus 17 ~~~~iLDiGCG~G---l-a~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~ 66 (169)
++.+|||+=|=|| + |..-...+|+.||.|..+++.|++|+. ..+|.|.+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl- 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL- 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE-
Confidence 3679999999999 3 334333489999999999999998754 34555543
Q ss_pred CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
..|.|......-.--..+++..+.++|+|||.|++++..
T Consensus 202 -DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 -DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp ---SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 234554321110001256899999999999999888754
No 206
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.39 E-value=0.00021 Score=52.74 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=32.8
Q ss_pred CCeEEEEcCccc-----ccC----cCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLP----MFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~----~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
...|+|+|||.| ++. ..++.+|+|||.++.+++.|+++..
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 578999999999 444 1377899999999999998876644
No 207
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.36 E-value=0.00018 Score=54.99 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVK 47 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~ 47 (169)
..++||+||++| +..+. +...|+|||+.+.
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 589999999999 44444 5689999999875
No 208
>KOG1500|consensus
Probab=97.33 E-value=0.00044 Score=58.45 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
+..|||||||+| .|..-....|.+||.| +|.++|++-+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv 219 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLV 219 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHH
Confidence 678999999999 3333345699999966 6888888643
No 209
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.31 E-value=0.0013 Score=54.44 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=58.8
Q ss_pred CCCeEEEEcCccc-----ccCcCCC--CcEEEEeCCHHHHHHHHHHhc-cccceE-E-----------EeCCCCcccc--
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPS--TLILGLEIRVKVSDYVIDEWS-LYLKKM-F-----------FLYPDPHFKR-- 74 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~--~~v~GiDis~~~l~~a~~~~~-~~~d~v-~-----------~~f~d~~f~~-- 74 (169)
+.-+||||.||+| .....|. .++.-.|.|+..++..++-+. ..++.+ . +.--+|.++.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3678999999999 3334454 599999999999998876554 111111 0 0000111110
Q ss_pred cchhh-----hcccHHHHHHHHHhccCCcEEEEEe-CChHHHHHHHHHHhcC
Q psy13086 75 CKYKW-----RIINQNLLSEYAYVLSEGGIVYTIT-DVKDLHDWIVSHFTEH 120 (169)
Q Consensus 75 ~h~~~-----~~~~~~~l~~~~rvLkpGG~l~i~~-d~~~~~~~~~~~~~~~ 120 (169)
..-.. +-.....++-+++.|.|||.++... ++..-.+.....+..|
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH 266 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH 266 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc
Confidence 00000 0012457888999999999998754 2222233233444444
No 210
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0036 Score=54.68 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=66.4
Q ss_pred CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeC------CCC-----ccccc--chhh
Q psy13086 17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLY------PDP-----HFKRC--KYKW 79 (169)
Q Consensus 17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f------~d~-----~f~~~--h~~~ 79 (169)
++.++||+=||.| +.......+|+|+|+++.+++.|++|++ ++++.+++.- ... .|+.. .--|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR 372 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR 372 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC
Confidence 4678999999999 3333345799999999999999999887 5555443211 000 11100 0000
Q ss_pred hcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~ 119 (169)
.=..+.+++.+ ..++|-..+|++++..+++.........
T Consensus 373 ~G~~~~~lk~l-~~~~p~~IvYVSCNP~TlaRDl~~L~~~ 411 (432)
T COG2265 373 AGADREVLKQL-AKLKPKRIVYVSCNPATLARDLAILAST 411 (432)
T ss_pred CCCCHHHHHHH-HhcCCCcEEEEeCCHHHHHHHHHHHHhC
Confidence 00124677777 5678999999999888888866554443
No 211
>KOG1709|consensus
Probab=97.28 E-value=0.00061 Score=54.31 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEe-C
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFL-Y 67 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~-f 67 (169)
.|+.+||.||.|-| +.++.|. .-.-||..+.++++.++... +.+|.|... |
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 45789999999999 3344455 44459999999998875321 445555431 1
Q ss_pred CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..-+-+ ...+.+.+.|+|||+|.|.+..
T Consensus 179 ~e~yEd---------l~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELYED---------LRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHHHH---------HHHHHHHHhhhcCCCceEEEec
Confidence 111101 1357788999999999998753
No 212
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.26 E-value=0.002 Score=55.12 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=66.7
Q ss_pred CCeEEEEcCccccc----CcCCC-CcEEEEeCCHHHHHHHHHHh-----c------------------------cccceE
Q psy13086 18 KVEFVDVGCGKLYL----PMFPS-TLILGLEIRVKVSDYVIDEW-----S------------------------LYLKKM 63 (169)
Q Consensus 18 ~~~iLDiGCG~Gla----~~~p~-~~v~GiDis~~~l~~a~~~~-----~------------------------~~~d~v 63 (169)
..++|=+|-|.|+| .++|+ .+++-||++++|++.++.+. . ..+|.+
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 46899999999933 35785 59999999999999997421 0 567888
Q ss_pred EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
.+.+|||.-.. .-|+.+.+|...+.|.|+++|.++++..
T Consensus 370 IVDl~DP~tps---~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 370 IVDLPDPSTPS---IGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEeCCCCCCcc---hhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 88899985432 2345567899999999999999999853
No 213
>KOG2915|consensus
Probab=97.25 E-value=0.002 Score=52.89 Aligned_cols=91 Identities=13% Similarity=0.233 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEE
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFF 65 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~ 65 (169)
.++.+|||-|.|+| +++.. |...++-.|+.+.-.+.|++..+ ..+|+|++
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEE
Confidence 34789999999999 44443 77899999999988888876432 56889999
Q ss_pred eCCCCcccccchhhhcccHHHHHHHHHhccCCc-EEEEEeCChHHHHHHHHHHhc
Q psy13086 66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGG-IVYTITDVKDLHDWIVSHFTE 119 (169)
Q Consensus 66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG-~l~i~~d~~~~~~~~~~~~~~ 119 (169)
..|.||- ++-.++.+||.+| +|+--++.-+..+...+.+..
T Consensus 184 DlPaPw~-------------AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~ 225 (314)
T KOG2915|consen 184 DLPAPWE-------------AIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRS 225 (314)
T ss_pred cCCChhh-------------hhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHh
Confidence 9999984 3444556788776 444445544444444444444
No 214
>KOG2187|consensus
Probab=97.19 E-value=0.0015 Score=57.72 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC----------CCcccccc-----
Q psy13086 16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP----------DPHFKRCK----- 76 (169)
Q Consensus 16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~----------d~~f~~~h----- 76 (169)
..+..+||+-|||| ++..-+-..|+||++++.+++.|+.+.. +.+++...... .+.++..+
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~ii 461 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAII 461 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEE
Confidence 34688999999999 6655566799999999999999998754 22222211100 01111100
Q ss_pred -hhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHH
Q psy13086 77 -YKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHD 111 (169)
Q Consensus 77 -~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~ 111 (169)
-.|.=.+..+++.+.+.-++-=.+|+++.....+.
T Consensus 462 DPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar 497 (534)
T KOG2187|consen 462 DPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAAR 497 (534)
T ss_pred CCCcccccHHHHHHHHhccCccceEEEEcCHHHhhh
Confidence 00000235677777666667777887765554333
No 215
>KOG4589|consensus
Probab=97.17 E-value=0.009 Score=46.80 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCccc----cc--CcCCCCcEEEEeCCH------------------HHHHHHHHHhc-cccceEEEe-CCC
Q psy13086 16 EKKVEFVDVGCGKL----YL--PMFPSTLILGLEIRV------------------KVSDYVIDEWS-LYLKKMFFL-YPD 69 (169)
Q Consensus 16 ~~~~~iLDiGCG~G----la--~~~p~~~v~GiDis~------------------~~l~~a~~~~~-~~~d~v~~~-f~d 69 (169)
.|..+|||+||..| .| +.+|+..++|||+-. .......+.++ ..+|.|... .|+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapn 147 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPN 147 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCC
Confidence 34789999999999 22 346888999999743 12222223333 566666432 333
Q ss_pred Cccc-ccchhhhc-ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 70 PHFK-RCKYKWRI-INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 70 ~~f~-~~h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+.=. .+.|-+.+ ...+++--....++|+|.|++..
T Consensus 148 aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 148 ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 3211 11111111 12344555557789999999875
No 216
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.17 E-value=0.00079 Score=54.91 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 16 EKKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 16 ~~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
-++.++||||||.= ++..---.+++..|.++..++..++
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~k 97 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEK 97 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHH
Confidence 34678999999998 2222112479999999987776543
No 217
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.15 E-value=0.0035 Score=51.47 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=29.7
Q ss_pred CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVID 54 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~ 54 (169)
..+|||+|||+| ....++. .+++.+|.|+.|++.++.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~ 76 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR 76 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH
Confidence 578999999999 3344553 489999999999998864
No 218
>KOG1663|consensus
Probab=97.14 E-value=0.0021 Score=51.48 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc----------------------------cccceE
Q psy13086 18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS----------------------------LYLKKM 63 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v 63 (169)
..+.||||.=|| .|...| +..|+++|+++...+.+.+-++ +++|.+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 578999998888 555555 5799999999988877643211 344444
Q ss_pred EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086 64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i 102 (169)
|+ | |+|++. ....+++.++||+||.+++
T Consensus 154 Fv---D------adK~nY--~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 154 FV---D------ADKDNY--SNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EE---c------cchHHH--HHHHHHHHhhcccccEEEE
Confidence 33 2 233332 3788999999999999987
No 219
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.08 E-value=0.004 Score=51.35 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=68.3
Q ss_pred CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeC
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLY 67 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f 67 (169)
++..|||+.+|.| +++... ...+++.|++..-+...++++. ..+|.|.+.-
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 3678999999999 665554 6799999999987777765432 2367666532
Q ss_pred CC---------Cccccc---chhhhc--ccHHHHHHHHHhc----cCCcEEEEEe------CChHHHHHHHHHHhcCCCc
Q psy13086 68 PD---------PHFKRC---KYKWRI--INQNLLSEYAYVL----SEGGIVYTIT------DVKDLHDWIVSHFTEHPLF 123 (169)
Q Consensus 68 ~d---------~~f~~~---h~~~~~--~~~~~l~~~~rvL----kpGG~l~i~~------d~~~~~~~~~~~~~~~~~f 123 (169)
|= |.-+.. .....+ .+.++|+...+.+ ||||+++-+| .++...++ .+..|+.|
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~---fl~~~~~~ 241 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEK---FLKRHPDF 241 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHH---HHHHSTSE
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHH---HHHhCCCc
Confidence 21 110000 000001 2477999999999 9999998886 12333333 34567777
Q ss_pred eecC
Q psy13086 124 VECD 127 (169)
Q Consensus 124 ~~~~ 127 (169)
+..+
T Consensus 242 ~l~~ 245 (283)
T PF01189_consen 242 ELVP 245 (283)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6643
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.07 E-value=0.00085 Score=59.70 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=30.4
Q ss_pred CCeEEEEcCccc-----ccCcCC--------CCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFP--------STLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p--------~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..+|||.|||+| ++...+ ..+++|+|+++.++..|+.++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 568999999999 222221 2589999999999999887643
No 221
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.07 E-value=0.0012 Score=51.17 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=51.2
Q ss_pred CCeEEEEcCccc-ccC--c-CCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEeC
Q psy13086 18 KVEFVDVGCGKL-YLP--M-FPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFLY 67 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~--~-~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~f 67 (169)
+.++||+=|||| ++- . .....++.||.+...++.+++|+. ..+| +.|
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fD---iIf 119 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFD---IIF 119 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EE---EEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCce---EEE
Confidence 689999999999 221 1 123589999999999999887754 2233 445
Q ss_pred CCCcccccchhhhcccHHHHHHHH--HhccCCcEEEEEeCCh
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYA--YVLSEGGIVYTITDVK 107 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~--rvLkpGG~l~i~~d~~ 107 (169)
-||-+..... ...+++.+. .+|+++|.+++.++..
T Consensus 120 lDPPY~~~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 120 LDPPYAKGLY-----YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp E--STTSCHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ECCCcccchH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 5554433211 145677766 7999999999876433
No 222
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.95 E-value=0.0014 Score=54.27 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=52.4
Q ss_pred CCeEEEEcCccc--ccC--c--------CCCCcEEEEeCCHHHHHHHHHHhc-------------------------ccc
Q psy13086 18 KVEFVDVGCGKL--YLP--M--------FPSTLILGLEIRVKVSDYVIDEWS-------------------------LYL 60 (169)
Q Consensus 18 ~~~iLDiGCG~G--la~--~--------~p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~ 60 (169)
+.+|||-.||+| |.. . .+..+++|+|+++.++..|+-++. ..+
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 126 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF 126 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 568999999999 221 1 367799999999999988875432 235
Q ss_pred ceEEEeCCCCcc--ccc------chhh-----hcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 61 KKMFFLYPDPHF--KRC------KYKW-----RIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 61 d~v~~~f~d~~f--~~~------h~~~-----~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
|.|..+-|-... ... .+.. .-..-.++..+.+.||+||++.+..+.
T Consensus 127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 555433221110 000 0000 001135889999999999998887643
No 223
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.85 E-value=0.0012 Score=53.53 Aligned_cols=46 Identities=15% Similarity=0.468 Sum_probs=32.8
Q ss_pred CccCCCCCCCCCCCCCeEEEEcCccc-c----cCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 4 SPLYPELKDPTCEKKVEFVDVGCGKL-Y----LPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 4 ~~~f~~~~~~~~~~~~~iLDiGCG~G-l----a~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
..+|+... ...+|+|||||.= + ....|++.++|+||+..+++....
T Consensus 97 ~~if~~~~-----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~ 147 (251)
T PF07091_consen 97 DEIFGRIP-----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNA 147 (251)
T ss_dssp HHHCCCS--------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHH
T ss_pred HHHHhcCC-----CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHH
Confidence 45677753 2689999999998 2 334567899999999999998764
No 224
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.79 E-value=0.011 Score=54.67 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=18.4
Q ss_pred cEEEEeCCHHHHHHHHHHhc
Q psy13086 38 LILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 38 ~v~GiDis~~~l~~a~~~~~ 57 (169)
.++|+|+++.|++.|++|+.
T Consensus 258 ~i~G~Did~~av~~A~~N~~ 277 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNAR 277 (702)
T ss_pred eEEEEECCHHHHHHHHHHHH
Confidence 69999999999999998865
No 225
>KOG3178|consensus
Probab=96.76 E-value=0.012 Score=49.86 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=74.1
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh-ccccceEEE-eCC-CCcccc------cchhhhccc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW-SLYLKKMFF-LYP-DPHFKR------CKYKWRIIN 83 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~-~~~~d~v~~-~f~-d~~f~~------~h~~~~~~~ 83 (169)
-...+|+|-|.| +...||. +-|++....-+..++..+ ++ +..+.- -|- -|.-+. .|+-..-..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~~g-V~~v~gdmfq~~P~~daI~mkWiLhdwtDedc 254 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLAPG-VEHVAGDMFQDTPKGDAIWMKWILHDWTDEDC 254 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhcCC-cceecccccccCCCcCeEEEEeecccCChHHH
Confidence 578999999999 3347775 778888887666666655 31 221110 011 111110 111111123
Q ss_pred HHHHHHHHHhccCCcEEEEEeCC-hH--H----------HHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHH
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDV-KD--L----------HDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQK 150 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~-~~--~----------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~ 150 (169)
-++|+.+...|+|||.+++...+ +. - ...+...+.... -...+.++|+.-
T Consensus 255 vkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~-----------------Gkert~~e~q~l 317 (342)
T KOG3178|consen 255 VKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSG-----------------GKERTLKEFQAL 317 (342)
T ss_pred HHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcc-----------------ceeccHHHHHhc
Confidence 57999999999999999997531 11 0 001111111111 133668889999
Q ss_pred HHHcCCCeEEEEEE
Q psy13086 151 VTRNKGEKFCAVFR 164 (169)
Q Consensus 151 ~~~~g~~i~~~~~~ 164 (169)
+.++|.+++....+
T Consensus 318 ~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 318 LPEEGFPVCMVALT 331 (342)
T ss_pred chhhcCceeEEEec
Confidence 99999999877653
No 226
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.61 E-value=0.004 Score=52.91 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=31.8
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM 63 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v 63 (169)
..+||+=||.| +|... .+|+|||+++.+++.|++|+. +.++.+
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~ 246 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNV 246 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SE
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcc
Confidence 37999999999 55554 689999999999999998876 444444
No 227
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.58 E-value=0.016 Score=49.16 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=55.1
Q ss_pred CCeEEEEcCccc---cc-CcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCCc
Q psy13086 18 KVEFVDVGCGKL---YL-PMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDPH 71 (169)
Q Consensus 18 ~~~iLDiGCG~G---la-~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~~ 71 (169)
+.+|||.=+|-| +. ..+....|+++|+++.+++++++|+. ..+|.|.|.+|..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~- 267 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPKS- 267 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCCc-
Confidence 688999999999 22 23333459999999999999998876 2244444444321
Q ss_pred ccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..+++....+.|++||.+.+-+
T Consensus 268 -----------a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 268 -----------AHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred -----------chhhHHHHHHHhhcCcEEEEEe
Confidence 2568888999999999998864
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.46 E-value=0.0092 Score=47.72 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHH----HHHHHHHHhc------------------cccceEEEeC
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVK----VSDYVIDEWS------------------LYLKKMFFLY 67 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~----~l~~a~~~~~------------------~~~d~v~~~f 67 (169)
.++.+||-+|..+| ++..- ++..|.+||.|+. ++..|++|-. ..+|.++...
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV 151 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDV 151 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecC
Confidence 34789999999999 44433 5789999999994 5666766521 4455444332
Q ss_pred CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe---------CChHHHHHHHHHHhcCCCceec
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT---------DVKDLHDWIVSHFTEHPLFVEC 126 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~---------d~~~~~~~~~~~~~~~~~f~~~ 126 (169)
+-| +. ..-++.++...||+||.++++. +.+..+....+.+.+. .|+..
T Consensus 152 aQp--~Q--------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~-~~~~~ 208 (229)
T PF01269_consen 152 AQP--DQ--------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEE-GFKPL 208 (229)
T ss_dssp SST--TH--------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCT-TCEEE
T ss_pred CCh--HH--------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHc-CCChh
Confidence 222 10 1347778888999999998862 2233444445555543 35543
No 229
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.0042 Score=50.75 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=32.1
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++..|||||+|.| |+++ ...|++||+++.+++..+++..
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc
Confidence 4688999999999 4444 3579999999999999988753
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.45 E-value=0.0062 Score=48.45 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=49.5
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHH---HHHhccccceEEEe------CC-CCc-ccccchhhhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYV---IDEWSLYLKKMFFL------YP-DPH-FKRCKYKWRI 81 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a---~~~~~~~~d~v~~~------f~-d~~-f~~~h~~~~~ 81 (169)
..+++|||+|.| +|-.+|+.+|+-+|-..+=+... .+.+. ++.+.+. |. ++. +|... .|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~--L~nv~i~~~RaE~~~~~~~~~D~vt-sRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG--LENVEIVHGRAEEFGQEKKQYDVVT-SRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC--CCCeEEehhhHhhcccccccCcEEE-eehc
Confidence 478999999999 88889999999999888754444 33322 1111111 10 011 22111 1111
Q ss_pred c-cHHHHHHHHHhccCCcEEE
Q psy13086 82 I-NQNLLSEYAYVLSEGGIVY 101 (169)
Q Consensus 82 ~-~~~~l~~~~rvLkpGG~l~ 101 (169)
- ...+++-+...||+||.+.
T Consensus 145 a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred cchHHHHHHHHHhcccCCcch
Confidence 1 2567778889999999874
No 231
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.41 E-value=0.0039 Score=47.57 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=28.4
Q ss_pred eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
.|||+.||.| +|+.+ .+|++||+++..++.|+.|+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~ 42 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAE 42 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHH
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHH
Confidence 6999999999 66665 579999999999999987754
No 232
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.30 E-value=0.0023 Score=45.56 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=23.1
Q ss_pred CCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCC
Q psy13086 3 WSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIR 45 (169)
Q Consensus 3 ~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis 45 (169)
|.+.++... ....+|||||+| |..+ +..=.|+|+.
T Consensus 50 W~~~~~~~~------~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R 89 (112)
T PF07757_consen 50 WRDMYGEQK------FQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR 89 (112)
T ss_pred HhcccCCCC------CCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence 666666632 567999999999 2222 3345788865
No 233
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.30 E-value=0.0023 Score=53.27 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=28.9
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..++||||||.- |+.+..+++++|.||++..++.|++++.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~ 147 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVE 147 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHH
Confidence 568999999999 4444448999999999999999998765
No 234
>KOG0820|consensus
Probab=96.29 E-value=0.0052 Score=50.60 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=33.7
Q ss_pred CCCeEEEEcCccc-ccC--cCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-YLP--MFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-la~--~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+...|||||.||| |.. ....++|+++|+++.|+....++..
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~ 101 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQ 101 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhc
Confidence 3578999999999 333 3356899999999999999988765
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.038 Score=43.66 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=48.9
Q ss_pred CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHH----HHH---------HHHHhc-----cccceEEEeCCCCcc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKV----SDY---------VIDEWS-----LYLKKMFFLYPDPHF 72 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~----l~~---------a~~~~~-----~~~d~v~~~f~d~~f 72 (169)
+...|+|+|+-.| +++.. +...|+|||+-+-- +.. +.+++. ..+|.|.. |..+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s---D~ap 121 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS---DMAP 121 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe---cCCC
Confidence 3689999999999 33333 34469999998721 111 112222 23455542 3222
Q ss_pred cc-----cchhhhc-ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 73 KR-----CKYKWRI-INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 73 ~~-----~h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+. .++.+.+ ....+++-...+|+|||.|.+..
T Consensus 122 ~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 122 NTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 21 1222221 23557777788999999998875
No 236
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.95 E-value=0.0093 Score=41.32 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=24.7
Q ss_pred EEEcCccc-----ccCcCCC---CcEEEEeCCHH---HHHHHHH-Hhc-------------------cccceEEEeCCCC
Q psy13086 22 VDVGCGKL-----YLPMFPS---TLILGLEIRVK---VSDYVID-EWS-------------------LYLKKMFFLYPDP 70 (169)
Q Consensus 22 LDiGCG~G-----la~~~p~---~~v~GiDis~~---~l~~a~~-~~~-------------------~~~d~v~~~f~d~ 70 (169)
||||+..| +++..+. .+++++|..+. .-+.+++ .+. ..+|.+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i----- 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI----- 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE-----
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE-----
Confidence 79998888 4444433 37999999994 3333332 111 22222222
Q ss_pred cccccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086 71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i 102 (169)
|..|.... ....++.+.+.|+|||.+++
T Consensus 76 --Dg~H~~~~--~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 76 --DGDHSYEA--VLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --ES---HHH--HHHHHHHHGGGEEEEEEEEE
T ss_pred --CCCCCHHH--HHHHHHHHHHHcCCCeEEEE
Confidence 12222111 24578888899999998876
No 237
>KOG3987|consensus
Probab=95.86 E-value=0.0041 Score=49.47 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=50.6
Q ss_pred CCeEEEEcCccc-ccCcC-CC-CcEEEEeCCHHHHHHHHHHh-c-----------cccceEE-EeCCCCcccccchhhhc
Q psy13086 18 KVEFVDVGCGKL-YLPMF-PS-TLILGLEIRVKVSDYVIDEW-S-----------LYLKKMF-FLYPDPHFKRCKYKWRI 81 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~~~-p~-~~v~GiDis~~~l~~a~~~~-~-----------~~~d~v~-~~f~d~~f~~~h~~~~~ 81 (169)
+.++||+|.|.| +..+. |. ..|.+.|.|..|..+.+++- . -.+|.|. ++.-|-.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~--------- 183 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCF--------- 183 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhc---------
Confidence 578999999999 44433 22 36899999999999887531 1 1233322 11111111
Q ss_pred ccHHHHHHHHHhccC-CcEEEEE
Q psy13086 82 INQNLLSEYAYVLSE-GGIVYTI 103 (169)
Q Consensus 82 ~~~~~l~~~~rvLkp-GG~l~i~ 103 (169)
..-.+++.++.+|+| .|+++++
T Consensus 184 ~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEE
Confidence 124799999999999 7988775
No 238
>KOG2352|consensus
Probab=95.86 E-value=0.021 Score=50.32 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=57.4
Q ss_pred eEEEEcCccc-ccC---cCCCCcEEEEeCCHHHHHHHHHHh-c-------cccceEEEeCCCCcccccchhh--------
Q psy13086 20 EFVDVGCGKL-YLP---MFPSTLILGLEIRVKVSDYVIDEW-S-------LYLKKMFFLYPDPHFKRCKYKW-------- 79 (169)
Q Consensus 20 ~iLDiGCG~G-la~---~~p~~~v~GiDis~~~l~~a~~~~-~-------~~~d~v~~~f~d~~f~~~h~~~-------- 79 (169)
++|-+|||.= +.. ..-...++-+|+|+-.++....+. . ...|...+.|+|++|+....+-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~d 130 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFED 130 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCC
Confidence 7999999999 332 223468999999999888776543 2 2333334567777776321110
Q ss_pred ---h---cccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 80 ---R---IINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 80 ---~---~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
. ......+.+++|+|+|||+++..|-
T Consensus 131 e~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 131 EDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred chhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 0 0125689999999999999887663
No 239
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.069 Score=41.62 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=53.8
Q ss_pred CCeEEEEcCccc-ccC--cC-CCCcEEEEeCCHHHHHHHHHHhc-------------------------cccceEEEeCC
Q psy13086 18 KVEFVDVGCGKL-YLP--MF-PSTLILGLEIRVKVSDYVIDEWS-------------------------LYLKKMFFLYP 68 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~--~~-p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~d~v~~~f~ 68 (169)
+.++||+=+|+| |.- .- -...++.||.+..++..+++|+. ..+|.| |-
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV---fl 120 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV---FL 120 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE---Ee
Confidence 689999999999 221 11 23589999999999999988754 124544 45
Q ss_pred CCcccccchhhhcccHHHHHH--HHHhccCCcEEEEEeCCh
Q psy13086 69 DPHFKRCKYKWRIINQNLLSE--YAYVLSEGGIVYTITDVK 107 (169)
Q Consensus 69 d~~f~~~h~~~~~~~~~~l~~--~~rvLkpGG~l~i~~d~~ 107 (169)
||-|...... ....+.. -...|+|+|.+++.++..
T Consensus 121 DPPy~~~l~~----~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 121 DPPYAKGLLD----KELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCCccchhh----HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 6655421110 0122222 347899999999987544
No 240
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.68 E-value=0.033 Score=41.43 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=40.6
Q ss_pred cEEEEeCCHHHHHHHHHHhc-----------------------c-ccceEEEeCC-CCcccccchhhhcccHHHHHHHHH
Q psy13086 38 LILGLEIRVKVSDYVIDEWS-----------------------L-YLKKMFFLYP-DPHFKRCKYKWRIINQNLLSEYAY 92 (169)
Q Consensus 38 ~v~GiDis~~~l~~a~~~~~-----------------------~-~~d~v~~~f~-d~~f~~~h~~~~~~~~~~l~~~~r 92 (169)
+|+|+||-+.+++.+++++. . .+|.+.+++- -|--|.....+.-..-.+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 48999999999999988764 1 3444443221 011111111111113568999999
Q ss_pred hccCCcEEEEEe
Q psy13086 93 VLSEGGIVYTIT 104 (169)
Q Consensus 93 vLkpGG~l~i~~ 104 (169)
+|+|||.+.++.
T Consensus 81 lL~~gG~i~iv~ 92 (140)
T PF06962_consen 81 LLKPGGIITIVV 92 (140)
T ss_dssp HEEEEEEEEEEE
T ss_pred hhccCCEEEEEE
Confidence 999999999985
No 241
>KOG1122|consensus
Probab=95.64 E-value=0.1 Score=45.39 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEe
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFL 66 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~ 66 (169)
+++.+|||..+-.| +|.... ...|++.|.+.+-+...+.++. +++|.|.+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLD 319 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLD 319 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeec
Confidence 35789999999999 554433 4589999999988887776543 246666543
Q ss_pred CC---------CCcccccchh---hhc--ccHHHHHHHHHhccCCcEEEEEe--CChHHHHHHH-HHHhcCCCceecCcc
Q psy13086 67 YP---------DPHFKRCKYK---WRI--INQNLLSEYAYVLSEGGIVYTIT--DVKDLHDWIV-SHFTEHPLFVECDLE 129 (169)
Q Consensus 67 f~---------d~~f~~~h~~---~~~--~~~~~l~~~~rvLkpGG~l~i~~--d~~~~~~~~~-~~~~~~~~f~~~~~~ 129 (169)
-| ++.++..... .+. .+.++|-.....+++||+|+-+| -..+..++.. ..+..+|.++.++.+
T Consensus 320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~ 399 (460)
T KOG1122|consen 320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTG 399 (460)
T ss_pred CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEecccc
Confidence 22 2222211100 000 24678889999999999998875 2222222222 234567777666544
No 242
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.63 E-value=0.088 Score=41.54 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=55.9
Q ss_pred EEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCCCc--ccccchhhhcc--------c
Q psy13086 21 FVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPDPH--FKRCKYKWRII--------N 83 (169)
Q Consensus 21 iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d~~--f~~~h~~~~~~--------~ 83 (169)
|.||||-.| |.+...-..++++|+++.-++.|++++. +--+.+.+...|.- .+.......++ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI 80 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence 689999999 5555555689999999999999998876 22233333322210 00000000111 2
Q ss_pred HHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
.+.|++....++..-.|+++..... ..++..+..++
T Consensus 81 ~~ILe~~~~~~~~~~~lILqP~~~~--~~LR~~L~~~g 116 (205)
T PF04816_consen 81 IEILEAGPEKLSSAKRLILQPNTHA--YELRRWLYENG 116 (205)
T ss_dssp HHHHHHTGGGGTT--EEEEEESS-H--HHHHHHHHHTT
T ss_pred HHHHHhhHHHhccCCeEEEeCCCCh--HHHHHHHHHCC
Confidence 5677777777777778888765432 22455555554
No 243
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.59 E-value=0.015 Score=47.17 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++..|||||+|+| |+... .++++||+++.+++..+++..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh
Confidence 4688999999999 43333 799999999999999988654
No 244
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.22 Score=39.57 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHH----HHHHHHH--h-c---------------cccceEEEeC
Q psy13086 15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKV----SDYVIDE--W-S---------------LYLKKMFFLY 67 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~----l~~a~~~--~-~---------------~~~d~v~~~f 67 (169)
..++.+||=+|.-+| ++..-++..+.|||.|+.+ +..|++| + + ..+|.++...
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 445789999999999 5555566789999999964 4455543 1 1 4455554433
Q ss_pred CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE--------e-CChHHHHHHHHHHhcCCCceecC
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI--------T-DVKDLHDWIVSHFTEHPLFVECD 127 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~--------~-d~~~~~~~~~~~~~~~~~f~~~~ 127 (169)
.-| +. ..-+..++...||+||.++++ | |.+..+......+.+. .|+...
T Consensus 154 AQp--~Q--------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~-~f~i~e 211 (231)
T COG1889 154 AQP--NQ--------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG-GFEILE 211 (231)
T ss_pred CCc--hH--------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc-CceeeE
Confidence 222 10 134778888999999977664 1 3344555445555543 366543
No 245
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.31 E-value=0.076 Score=45.44 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=57.3
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c---------------------ccceEEE-eCCC
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L---------------------YLKKMFF-LYPD 69 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~---------------------~~d~v~~-~f~d 69 (169)
..+|||-=+||| +|.+-+...++.=|+|+++++.+++|+. + .+|.|.+ +|-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGS 132 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFGS 132 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCCC
Confidence 467999999999 6666666699999999999999998876 2 1222221 1111
Q ss_pred CcccccchhhhcccHHHHHHHHHhccCCcEEEEE-eCChH
Q psy13086 70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI-TDVKD 108 (169)
Q Consensus 70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~-~d~~~ 108 (169)
...|+....+.++.||.+.++ ||...
T Consensus 133 -------------PaPFlDaA~~s~~~~G~l~vTATD~a~ 159 (380)
T COG1867 133 -------------PAPFLDAALRSVRRGGLLCVTATDTAP 159 (380)
T ss_pred -------------CchHHHHHHHHhhcCCEEEEEeccccc
Confidence 146999999999999999986 56443
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.93 E-value=0.14 Score=42.23 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=45.0
Q ss_pred CCeEEEEcCccc------ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeC
Q psy13086 18 KVEFVDVGCGKL------YLPMF-PSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLY 67 (169)
Q Consensus 18 ~~~iLDiGCG~G------la~~~-p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f 67 (169)
..+|+=||||.= +++.+ +++.|+++|+++.+++.|++-+. ..+|.|++--
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 358999999977 66543 67899999999999999875322 1112222110
Q ss_pred CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
--.. ... .-.++++.+.+.++||..+...+
T Consensus 201 lVg~--~~e-----~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGM--DAE-----PKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S-----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hccc--ccc-----hHHHHHHHHHhhCCCCcEEEEec
Confidence 0000 000 12579999999999999999986
No 247
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.74 E-value=0.11 Score=39.62 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=49.2
Q ss_pred cccceEEEeCCCCcccccchh-----hhcccHHHHHHHHHhccCCcEEEEEe-CChHHHHHHHHHHhcCCCceec
Q psy13086 58 LYLKKMFFLYPDPHFKRCKYK-----WRIINQNLLSEYAYVLSEGGIVYTIT-DVKDLHDWIVSHFTEHPLFVEC 126 (169)
Q Consensus 58 ~~~d~v~~~f~d~~f~~~h~~-----~~~~~~~~l~~~~rvLkpGG~l~i~~-d~~~~~~~~~~~~~~~~~f~~~ 126 (169)
..+|.|..+||-.-....+.+ .+.....|++.+..+|+++|.++++- +...|..|-...++++.++...
T Consensus 74 ~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 74 QRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV 148 (166)
T ss_pred CcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence 678888888886531111111 12234789999999999999999874 4556788888888888877664
No 248
>KOG2352|consensus
Probab=94.69 E-value=0.12 Score=45.57 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=62.6
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------------cccceEE
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------------LYLKKMF 64 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v~ 64 (169)
...+|-||-|.| +...+|...+++|++.+.|++.|++... ...|.+.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 467888888888 5566788999999999999998864211 2344443
Q ss_pred EeCCCCcccccch----hhhcccHHHHHHHHHhccCCcEEEEE--eCChHHHHHHHHHH
Q psy13086 65 FLYPDPHFKRCKY----KWRIINQNLLSEYAYVLSEGGIVYTI--TDVKDLHDWIVSHF 117 (169)
Q Consensus 65 ~~f~d~~f~~~h~----~~~~~~~~~l~~~~rvLkpGG~l~i~--~d~~~~~~~~~~~~ 117 (169)
.....+ + .|. -..++.+.++..+..+|.|.|.|+|- +.+..+...+...+
T Consensus 376 ~dvds~--d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l 431 (482)
T KOG2352|consen 376 VDVDSK--D-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNL 431 (482)
T ss_pred EECCCC--C-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhh
Confidence 221110 1 111 01224578999999999999999774 44445544454444
No 249
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.074 Score=45.52 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=47.6
Q ss_pred CCeEEEEcCccc---cc--CcCCCC-cEEEEeCCHHHHHHH---HHHhc----------cccceEEEeCCCCcc------
Q psy13086 18 KVEFVDVGCGKL---YL--PMFPST-LILGLEIRVKVSDYV---IDEWS----------LYLKKMFFLYPDPHF------ 72 (169)
Q Consensus 18 ~~~iLDiGCG~G---la--~~~p~~-~v~GiDis~~~l~~a---~~~~~----------~~~d~v~~~f~d~~f------ 72 (169)
..+|||+|.|.| +| ..+|+. .++-++.|+.+-+.. .+++. -+.|...+...|..-
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 456999999999 33 457874 667778887543332 23321 111111111111100
Q ss_pred cccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 73 KRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 73 ~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
+..+..........++.+..++.|||.|+|+..
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 001111110113488999999999999999864
No 250
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.35 E-value=0.19 Score=41.40 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=27.3
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYV 52 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a 52 (169)
+.+||==|||-| +|.. +..+.|.|.|--|+-..
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s 94 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLAS 94 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHH
Confidence 578999999999 5554 67999999999987543
No 251
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.33 E-value=0.17 Score=42.23 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~ 56 (169)
+...||.=-|.| +....| ..+++|+|.++.+++.|++++
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 578999999999 444455 456999999999999998754
No 252
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.30 E-value=0.073 Score=42.39 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=51.3
Q ss_pred CCeEEEEcCccc--ccCcCCCCcEEEEeCCHH--HHHHH---HHHhc----cccceEEE-----eCCCCcccccchhhhc
Q psy13086 18 KVEFVDVGCGKL--YLPMFPSTLILGLEIRVK--VSDYV---IDEWS----LYLKKMFF-----LYPDPHFKRCKYKWRI 81 (169)
Q Consensus 18 ~~~iLDiGCG~G--la~~~p~~~v~GiDis~~--~l~~a---~~~~~----~~~d~v~~-----~f~d~~f~~~h~~~~~ 81 (169)
.-++|||||=+. .....+-..|+.||+++. -|.+. +.-++ ..+|.|.+ +.|+|. .|
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~-------~R- 123 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK-------QR- 123 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHH-------HH-
Confidence 468999999755 233344457999999873 22111 11122 45666543 235542 11
Q ss_pred ccHHHHHHHHHhccCCcE-----EEEEeCCh
Q psy13086 82 INQNLLSEYAYVLSEGGI-----VYTITDVK 107 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~-----l~i~~d~~ 107 (169)
-+.++.+++.|+|+|. |+++.+.+
T Consensus 124 --G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 124 --GEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred --HHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 4799999999999999 99987543
No 253
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.18 E-value=0.22 Score=42.23 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=50.7
Q ss_pred CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------cccceEEEeCCCCccc
Q psy13086 17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------LYLKKMFFLYPDPHFK 73 (169)
Q Consensus 17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~----------------~~~d~v~~~f~d~~f~ 73 (169)
++.+|+=+|+| | +|+.. .++|+++|.|++-++.|++--. ..+|.+...
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t------- 236 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT------- 236 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-------
Confidence 36889999999 8 44443 3899999999998888875311 112222211
Q ss_pred ccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 74 RCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+.+..+....+.||+||++.++-
T Consensus 237 --------v~~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 237 --------VGPATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred --------CChhhHHHHHHHHhcCCEEEEEC
Confidence 12568889999999999999873
No 254
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.18 E-value=0.11 Score=44.78 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=53.4
Q ss_pred CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc-cccce--EEEeCCCCcccc--cchhhhcc----
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS-LYLKK--MFFLYPDPHFKR--CKYKWRII---- 82 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~-~~~d~--v~~~f~d~~f~~--~h~~~~~~---- 82 (169)
+.++||.=+|+| .+.+.++ ..|+.-|+|+++++.+++|+. +.++. +.+...|...-. ......++
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 358999999999 5555443 689999999999999999866 22222 222211110000 00000111
Q ss_pred ---cHHHHHHHHHhccCCcEEEEE-eCChH
Q psy13086 83 ---NQNLLSEYAYVLSEGGIVYTI-TDVKD 108 (169)
Q Consensus 83 ---~~~~l~~~~rvLkpGG~l~i~-~d~~~ 108 (169)
...|+....+.+|.||.|.++ ||...
T Consensus 130 fGSp~pfldsA~~~v~~gGll~vTaTD~a~ 159 (377)
T PF02005_consen 130 FGSPAPFLDSALQAVKDGGLLCVTATDTAV 159 (377)
T ss_dssp SS--HHHHHHHHHHEEEEEEEEEEE--HHH
T ss_pred CCCccHhHHHHHHHhhcCCEEEEecccccc
Confidence 147999999999999999997 45443
No 255
>PRK11524 putative methyltransferase; Provisional
Probab=94.13 E-value=0.061 Score=44.23 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
.++..|||-=||+| +|...-+.+++|+|++++.++.|++|+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 44789999999999 5555557899999999999999999975
No 256
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.62 E-value=0.26 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHhccCCcEEEEE
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
+-.+++|+.++|.++|||+|.--
T Consensus 183 ~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 183 MWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred hccHHHHHHHHHHhCCCCEEEEe
Confidence 34589999999999999999743
No 257
>KOG1596|consensus
Probab=93.55 E-value=0.64 Score=38.03 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCH----HHHHHHHHHhc---------------cccceEEEeCCCC
Q psy13086 16 EKKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRV----KVSDYVIDEWS---------------LYLKKMFFLYPDP 70 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~----~~l~~a~~~~~---------------~~~d~v~~~f~d~ 70 (169)
.+..+||=+|.++| .+.. -|+--|++||.|. .++..|++|-. .-+-.|.+.|+|-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv 234 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV 234 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence 34689999999999 3333 3778999999997 47777776421 1122333444441
Q ss_pred -cccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 71 -HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 71 -~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
.++.. .-+.=+.+-.||+||.|.++
T Consensus 235 aqpdq~--------RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 235 AQPDQA--------RIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred CCchhh--------hhhhhhhhhhhccCCeEEEE
Confidence 22210 12333456789999999886
No 258
>KOG1562|consensus
Probab=93.43 E-value=1.1 Score=37.56 Aligned_cols=90 Identities=19% Similarity=0.071 Sum_probs=62.6
Q ss_pred CCeEEEEcCccc--ccC--cCCC-CcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086 18 KVEFVDVGCGKL--YLP--MFPS-TLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF 65 (169)
Q Consensus 18 ~~~iLDiGCG~G--la~--~~p~-~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~ 65 (169)
..++|=||=|.| +.. +.+. .+++-+|+..++++..++=++ +.+|.+..
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~ 201 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT 201 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence 578999999999 221 2243 378889999999988765222 56666666
Q ss_pred eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHH
Q psy13086 66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHD 111 (169)
Q Consensus 66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~ 111 (169)
.-+||.-.. -.+..+.++.-+.+.||+||.++.+.+.-.++.
T Consensus 202 dssdpvgpa----~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~ 243 (337)
T KOG1562|consen 202 DSSDPVGPA----CALFQKPYFGLVLDALKGDGVVCTQGECMWLHL 243 (337)
T ss_pred ecCCccchH----HHHHHHHHHHHHHHhhCCCcEEEEecceehHHH
Confidence 666664222 122346799999999999999999877654443
No 259
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.39 E-value=0.1 Score=39.71 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=47.5
Q ss_pred CeEEEEcCcccccCcCCCCcEEEEeCCH--HHHHHHHHHhc---cccceEEEeCCCCcccccchhhhcc---cHHHHHHH
Q psy13086 19 VEFVDVGCGKLYLPMFPSTLILGLEIRV--KVSDYVIDEWS---LYLKKMFFLYPDPHFKRCKYKWRII---NQNLLSEY 90 (169)
Q Consensus 19 ~~iLDiGCG~Gla~~~p~~~v~GiDis~--~~l~~a~~~~~---~~~d~v~~~f~d~~f~~~h~~~~~~---~~~~l~~~ 90 (169)
+-.+-||||.= .-+|++..+-++-.+ ..+..|..... +++|+|.. .|.-..+. --.+++++
T Consensus 4 p~kv~ig~G~~--r~npgWi~~d~ed~~~vdlvc~As~e~~F~dns~d~iya---------eHvlEHlt~~Eg~~alkec 72 (185)
T COG4627 4 PEKVKIGAGGK--RVNPGWIITDVEDRPEVDLVCRASNESMFEDNSVDAIYA---------EHVLEHLTYDEGTSALKEC 72 (185)
T ss_pred ceEEEEecccc--ccCCCceeeehhcccccchhhhhhhhccCCCcchHHHHH---------HHHHHHHhHHHHHHHHHHH
Confidence 45788999972 233555554443332 23333433221 44554321 11111111 24699999
Q ss_pred HHhccCCcEEEEEeCChHHHHHHH
Q psy13086 91 AYVLSEGGIVYTITDVKDLHDWIV 114 (169)
Q Consensus 91 ~rvLkpGG~l~i~~d~~~~~~~~~ 114 (169)
+|+|||||.|-++.+...+..|.-
T Consensus 73 hr~Lrp~G~LriAvPdl~f~~~~Y 96 (185)
T COG4627 73 HRFLRPGGKLRIAVPDLKFLDWLY 96 (185)
T ss_pred HHHhCcCcEEEEEcCCcchhHHHH
Confidence 999999999999977665555443
No 260
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.35 E-value=0.11 Score=41.94 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=47.9
Q ss_pred CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHH-----------hc--------cccceEEEeCCCCccc
Q psy13086 17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDE-----------WS--------LYLKKMFFLYPDPHFK 73 (169)
Q Consensus 17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~-----------~~--------~~~d~v~~~f~d~~f~ 73 (169)
++..+||||.-|| .+.......|+|||+..+-+..-.++ ++ ...|. ...|-+|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~---~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL---IVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe---EEEEeehh
Confidence 4789999999999 44454567999999998655433211 11 11121 22222332
Q ss_pred ccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086 74 RCKYKWRIINQNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l~i 102 (169)
. ....|..+..+|+|+|.++.
T Consensus 156 S--------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 156 S--------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred h--------HHHHHHHHHHhcCCCceEEE
Confidence 1 24688889999999998765
No 261
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.84 E-value=0.18 Score=42.18 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=33.2
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
+..++|-=||.| ++...++..|+|+|.++.+++.|++++
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 578999999999 555666689999999999999997653
No 262
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=92.52 E-value=0.11 Score=44.32 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=22.1
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCH
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRV 46 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~ 46 (169)
++.++|||||++| +.++ +..|+|||.++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~ 243 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP 243 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh
Confidence 3689999999999 4444 56999999554
No 263
>KOG1253|consensus
Probab=92.46 E-value=0.12 Score=45.86 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCccc-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhc--------------------------cccceE
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMFPST-LILGLEIRVKVSDYVIDEWS--------------------------LYLKKM 63 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v 63 (169)
++..+|||.=|++| .|...|+. .+++-|.+++.++..++|+. ..||.|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 44678999999999 55566664 89999999999998887755 234444
Q ss_pred EE-eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE-eC
Q psy13086 64 FF-LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI-TD 105 (169)
Q Consensus 64 ~~-~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~-~d 105 (169)
.+ +|-. ...||+...+.++.||.|++. ||
T Consensus 188 DLDPyGs-------------~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DLDPYGS-------------PSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ecCCCCC-------------ccHHHHHHHHHhhcCCEEEEEecc
Confidence 33 1211 246999999999999999986 45
No 264
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=0.35 Score=39.65 Aligned_cols=85 Identities=11% Similarity=0.122 Sum_probs=51.8
Q ss_pred CCeEEEEcCccc---------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceE-----------------EEe
Q psy13086 18 KVEFVDVGCGKL---------YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKM-----------------FFL 66 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v-----------------~~~ 66 (169)
....+|+|.|+- ++.+..-..++.||+|...++.-.+.+. -.+.++ .+.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 467999999999 5555555799999999998765433221 000000 011
Q ss_pred CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
|+-.+..+..-. ....|+..+..+|+||-.|.+-+|
T Consensus 159 flGStlGN~tp~---e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 159 FLGSTLGNLTPG---ECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EecccccCCChH---HHHHHHHHHHhcCCCcceEEEecc
Confidence 211111100000 125799999999999999999765
No 265
>PRK13699 putative methylase; Provisional
Probab=92.36 E-value=0.17 Score=40.42 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=35.2
Q ss_pred CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
.++..|||-=||+| +|...-+.+++|+|+++...+.|.+|+.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 34689999999999 5544457799999999999999988875
No 266
>KOG1501|consensus
Probab=92.32 E-value=0.099 Score=45.96 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
...+||||.||| +|.+-..-.++++|+-..|.+.|++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARK 107 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHH
Confidence 457999999999 5544444589999999999999985
No 267
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.10 E-value=0.83 Score=38.75 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHH
Q psy13086 16 EKKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 16 ~~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~ 55 (169)
.++.+||.+|||. | +|+......++++|.++.+++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 3467899999987 6 55555444699999999998888764
No 268
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.99 E-value=0.78 Score=37.71 Aligned_cols=85 Identities=11% Similarity=0.060 Sum_probs=46.1
Q ss_pred CeEEEEcCccc-------ccC-cCCCCcEEEEeCCHHHHHHHHHHhccc----cceEE------------------EeCC
Q psy13086 19 VEFVDVGCGKL-------YLP-MFPSTLILGLEIRVKVSDYVIDEWSLY----LKKMF------------------FLYP 68 (169)
Q Consensus 19 ~~iLDiGCG~G-------la~-~~p~~~v~GiDis~~~l~~a~~~~~~~----~d~v~------------------~~f~ 68 (169)
...||||||-= .|+ ..|+++|+=||..+-++.+++.-+..+ ...+. +.|.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 56999999965 443 479999999999999998887644311 11111 0111
Q ss_pred CCc----ccccchhhh-cccHHHHHHHHHhccCCcEEEEE
Q psy13086 69 DPH----FKRCKYKWR-IINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 69 d~~----f~~~h~~~~-~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
-|. ....|+... -....+++.+...|.||..|.|+
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is 189 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS 189 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence 110 001122211 11357999999999999999997
No 269
>PHA01634 hypothetical protein
Probab=91.40 E-value=0.37 Score=35.62 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=32.4
Q ss_pred CCCeEEEEcCccc-ccCcC---CCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-YLPMF---PSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-la~~~---p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
++.+|+|||.+-| -|..| ....|+++++++++.+..+++++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 4688999999999 22222 23589999999999999988765
No 270
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=91.28 E-value=0.25 Score=38.91 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.8
Q ss_pred CeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 19 VEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 19 ~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
.++-|+|.|+| .|... ..+|++|+.++.-.++|.+|+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~ 75 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLH 75 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCC
Confidence 56899999999 44444 4599999999999999999965
No 271
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.00 E-value=0.99 Score=38.94 Aligned_cols=69 Identities=10% Similarity=-0.011 Sum_probs=39.9
Q ss_pred EEEEeCCHHHHHHHHHHhc--cccceEEEe------CCCC--c---------ccccchhhhc---ccHHHHHHHHHhccC
Q psy13086 39 ILGLEIRVKVSDYVIDEWS--LYLKKMFFL------YPDP--H---------FKRCKYKWRI---INQNLLSEYAYVLSE 96 (169)
Q Consensus 39 v~GiDis~~~l~~a~~~~~--~~~d~v~~~------f~d~--~---------f~~~h~~~~~---~~~~~l~~~~rvLkp 96 (169)
++|+|+++.|++.|+.|+. +..|.|.+. ++.| . ...+-..... ..+.+.+.+.+.++-
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence 7799999999999998865 222222210 1111 1 1111111111 124677778888888
Q ss_pred CcEEEEEeCCh
Q psy13086 97 GGIVYTITDVK 107 (169)
Q Consensus 97 GG~l~i~~d~~ 107 (169)
-+.++|+++-.
T Consensus 337 ws~~v~tt~e~ 347 (381)
T COG0116 337 WSRYVFTTSED 347 (381)
T ss_pred CceEEEEccHH
Confidence 88888877443
No 272
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.89 E-value=0.21 Score=39.57 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=35.8
Q ss_pred CCCeEEEEcCccc-----c---cCc-CCCCcEEEEeCCHHHHHH-HH------HHhc----ccc-----ceEEE--eCCC
Q psy13086 17 KKVEFVDVGCGKL-----Y---LPM-FPSTLILGLEIRVKVSDY-VI------DEWS----LYL-----KKMFF--LYPD 69 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----l---a~~-~p~~~v~GiDis~~~l~~-a~------~~~~----~~~-----d~v~~--~f~d 69 (169)
|+.+|+|+|.=.| . ... .+..+|+|||+...-... |. .++. .+. +.+.. ..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4688999999998 2 233 377899999996432221 11 2222 111 11100 0122
Q ss_pred Ccc---cccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 70 PHF---KRCKYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 70 ~~f---~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
|+. |..|.... .-..|+.++.++++|+.+++.
T Consensus 112 ~vlVilDs~H~~~h--vl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVILDSSHTHEH--VLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEEESS----SS--HHHHHHHHHHT--TT-EEEET
T ss_pred ceEEEECCCccHHH--HHHHHHHhCccCCCCCEEEEE
Confidence 221 22222222 245677799999999999874
No 273
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.64 E-value=1.8 Score=34.38 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=18.9
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q psy13086 84 QNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.++.+++++.|||||.+.+..
T Consensus 146 ~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 146 AKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred HHHHHHHHHhcCCCcEEEEEe
Confidence 678999999999999999874
No 274
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.04 E-value=0.23 Score=39.73 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=28.5
Q ss_pred CCeEEEEcCccc-----ccCcCCC--CcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPS--TLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~--~~v~GiDis~~~l~~a~~~~ 56 (169)
.-++-|=.||.| +...++. .+|+|-||++++++.|++|+
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 467999999999 3333333 58999999999999998764
No 275
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=89.39 E-value=0.42 Score=37.76 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEEcCccc---ccC-cCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 13 PTCEKKVEFVDVGCGKL---YLP-MFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 13 ~~~~~~~~iLDiGCG~G---la~-~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
|++-++.+|||+|.|+| ++. +.-...|+..|+.+..+..++-|+.
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ 123 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAA 123 (218)
T ss_pred ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchh
Confidence 34556789999999999 333 3344689999999877766665554
No 276
>KOG3201|consensus
Probab=88.83 E-value=0.73 Score=35.52 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=53.7
Q ss_pred CeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086 19 VEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL 66 (169)
Q Consensus 19 ~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~ 66 (169)
..|||+|-|-= +|..-|+..|.-.|-++..++..++-+. ..||.|.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl-- 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL-- 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE--
Confidence 56999998854 6666788899999999988876653111 2455432
Q ss_pred CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
..|=.|=..| ..++++-+.+.|+|.|...+.++-
T Consensus 109 aADClFfdE~------h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 109 AADCLFFDEH------HESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred eccchhHHHH------HHHHHHHHHHHhCcccceeEecCc
Confidence 2222111112 257899999999999998887764
No 277
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.69 E-value=0.61 Score=37.90 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
++.++||||.|.- +..+-=+..++|.|+++..++.|+..+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii 122 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAII 122 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHH
Confidence 5678999999887 333333679999999999999887543
No 278
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.48 E-value=0.27 Score=39.60 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCeEEEEcCccc---------ccCcCC----CCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL---------YLPMFP----STLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~~~p----~~~v~GiDis~~~l~~a~~~~ 56 (169)
...|+|+|.|+| +....| ..+++-||+|+.+.+..++++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 368999999999 333323 469999999999887776654
No 279
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=88.35 E-value=0.34 Score=40.63 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
+..+||.=.|.| +....|+..++|+|.++.+++.|++++
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l 64 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERL 64 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCT
T ss_pred CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHH
Confidence 578999999999 556667799999999999999998654
No 280
>KOG2730|consensus
Probab=88.33 E-value=0.36 Score=38.87 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=31.5
Q ss_pred CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..+.|+|.=||.| .|.. ...|++||+++--|..|+.|++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNae 137 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAE 137 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccce
Confidence 3678999988888 4444 4689999999999999998865
No 281
>KOG2793|consensus
Probab=87.99 E-value=2.7 Score=34.23 Aligned_cols=101 Identities=11% Similarity=0.228 Sum_probs=56.5
Q ss_pred CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHH--HHHH--Hhc-----cccceEEEeCC--------CCc-cccc
Q psy13086 18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSD--YVID--EWS-----LYLKKMFFLYP--------DPH-FKRC 75 (169)
Q Consensus 18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~--~a~~--~~~-----~~~d~v~~~f~--------d~~-f~~~ 75 (169)
..+|||+|.|+| ++.....++|.--|....+.. ..++ ++. +++....+..- -|+ ++..
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 457999999999 444446678877776654332 2211 111 13333222221 112 2211
Q ss_pred chhhhc----ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHh
Q psy13086 76 KYKWRI----INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFT 118 (169)
Q Consensus 76 h~~~~~----~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~ 118 (169)
-..+-+ ..+.+++-++..|..+|.+++.+...+-+.|-...+.
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~ 213 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLL 213 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHH
Confidence 111100 1367889999999999999998887775555554443
No 282
>KOG4058|consensus
Probab=87.22 E-value=0.66 Score=35.27 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCCeEEEEcCccc---ccCc-CCCCcEEEEeCCHHHHHHHH
Q psy13086 17 KKVEFVDVGCGKL---YLPM-FPSTLILGLEIRVKVSDYVI 53 (169)
Q Consensus 17 ~~~~iLDiGCG~G---la~~-~p~~~v~GiDis~~~l~~a~ 53 (169)
+..+.+|+|.|.| ++.. .--..-+|+|+++=.+.+++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysr 112 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSR 112 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHH
Confidence 3678999999999 4432 22247789999998888776
No 283
>KOG2920|consensus
Probab=85.87 E-value=0.54 Score=38.91 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHH
Q psy13086 18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSD 50 (169)
Q Consensus 18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~ 50 (169)
..+|||+|||+| .+-.-....+.-.|+|...++
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 578999999999 222222267888888887764
No 284
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.49 E-value=1.2 Score=35.60 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=33.7
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..+.||||=.| +-+.++...+++.|+++.-++.|.++++
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~ 61 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVK 61 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHH
Confidence 44999999999 5566788899999999999999988765
No 285
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=82.24 E-value=9 Score=34.02 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=54.1
Q ss_pred eEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHH--------------------hc---------cccceE
Q psy13086 20 EFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDE--------------------WS---------LYLKKM 63 (169)
Q Consensus 20 ~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~--------------------~~---------~~~d~v 63 (169)
+|.=||+|.. +|..-++.+|+|+|+++.-++..++. +. ...|.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi 82 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIV 82 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEE
Confidence 4677888887 44443457899999999877765321 11 235666
Q ss_pred EEeCCCCccccc---chhhhc-ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 64 FFLYPDPHFKRC---KYKWRI-INQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 64 ~~~f~d~~f~~~---h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
++..+.|....- .....+ ....+++++.+.|++|-.+++.|..
T Consensus 83 ~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STv 129 (473)
T PLN02353 83 FVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (473)
T ss_pred EEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 677776643110 000011 1357899999999988877777643
No 286
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=81.43 E-value=0.75 Score=38.43 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=50.2
Q ss_pred CeEEEEcCccc---------ccCcCCCCcEEEEeCCHHHHHH-H--HHHhccccceEEEeCCCCcccc--cchhhhcccH
Q psy13086 19 VEFVDVGCGKL---------YLPMFPSTLILGLEIRVKVSDY-V--IDEWSLYLKKMFFLYPDPHFKR--CKYKWRIINQ 84 (169)
Q Consensus 19 ~~iLDiGCG~G---------la~~~p~~~v~GiDis~~~l~~-a--~~~~~~~~d~v~~~f~d~~f~~--~h~~~~~~~~ 84 (169)
...+=.|+||| |..++|+.+++|+|+....+-. . -.+++ .+-..|-...++. ......+..+
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~----GIG~~~ip~~~~~~~iD~v~~V~d~ 245 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIE----GIGAGFVPENLDLDLIDEVIRVSDE 245 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccC----CCCCCcCCcccccccCceEEEECHH
Confidence 56778899999 6678899999999998543221 1 11111 1111110011110 1111122347
Q ss_pred HHHHHHHHhccCCcEEEEEeCChHH
Q psy13086 85 NLLSEYAYVLSEGGIVYTITDVKDL 109 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~~d~~~~ 109 (169)
+.+..++++.+..|.|.=.|-...+
T Consensus 246 ~A~~~~r~La~~eGilvG~SsGA~~ 270 (300)
T COG0031 246 EAIATARRLAREEGLLVGISSGAAL 270 (300)
T ss_pred HHHHHHHHHHHHhCeeecccHHHHH
Confidence 8999999999999998765544433
No 287
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.33 E-value=2.7 Score=36.12 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=29.5
Q ss_pred CCeEEEEcCccc---------ccCcCC----CCcEEEEeCCHHHHHHHHHHh
Q psy13086 18 KVEFVDVGCGKL---------YLPMFP----STLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~~~p----~~~v~GiDis~~~l~~a~~~~ 56 (169)
+-.++|||.|+| +.+..| ..++.-||+|++..+.-++++
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 567999999999 223334 579999999999887765543
No 288
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=80.63 E-value=1.2 Score=31.75 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.4
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q psy13086 84 QNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..+++.+++.|+|||.|++.-
T Consensus 24 ~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHhhCCCCEEEEeC
Confidence 469999999999999999964
No 289
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.06 E-value=10 Score=32.00 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=52.2
Q ss_pred CeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeC----------------CCCcccccc
Q psy13086 19 VEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLY----------------PDPHFKRCK 76 (169)
Q Consensus 19 ~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f----------------~d~~f~~~h 76 (169)
.+++=+|||.= +++......|+.+|.++.-++.|++... .+.+...- .|-.++..
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g--~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~- 246 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG--ADVVVNPSEDDAGAEILELTGGRGADVVIEAV- 246 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC--CeEeecCccccHHHHHHHHhCCCCCCEEEECC-
Confidence 38999999984 5566677899999999999999987432 01000000 01011111
Q ss_pred hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 77 YKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
-.+..+....++++|||++.+..
T Consensus 247 -----G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 247 -----GSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred -----CCHHHHHHHHHHhcCCCEEEEEe
Confidence 13568999999999999999874
No 290
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.92 E-value=3.5 Score=31.78 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=45.7
Q ss_pred EEEEcCccc---ccCcC--CCCcEEEEeCCHHHHHHHHH----------------Hh-----c---------cccceEEE
Q psy13086 21 FVDVGCGKL---YLPMF--PSTLILGLEIRVKVSDYVID----------------EW-----S---------LYLKKMFF 65 (169)
Q Consensus 21 iLDiGCG~G---la~~~--p~~~v~GiDis~~~l~~a~~----------------~~-----~---------~~~d~v~~ 65 (169)
|-=||.|.= +|..+ .+.+|+|+|+++..++..++ .. . ...|.+++
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I 82 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFI 82 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEE
Confidence 344566653 33332 45799999999987776542 11 1 45667777
Q ss_pred eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
..|.|.-...... .-...++++.+...|++|-.+++.|..
T Consensus 83 ~VpTP~~~~~~~D-ls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 83 CVPTPSDEDGSPD-LSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp ----EBETTTSBE-THHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred ecCCCccccCCcc-HHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 7766643311100 001267899999999998888887643
No 291
>KOG2651|consensus
Probab=79.79 E-value=2.2 Score=37.03 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=27.3
Q ss_pred CCeEEEEcCccc-ccCcC---CCCcEEEEeCCHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL-YLPMF---PSTLILGLEIRVKVSDYVI 53 (169)
Q Consensus 18 ~~~iLDiGCG~G-la~~~---p~~~v~GiDis~~~l~~a~ 53 (169)
-+.++|||.|.| |++.. -+..|.|||-|....+.|+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 367999999999 44322 2569999999987777664
No 292
>KOG2198|consensus
Probab=79.30 E-value=15 Score=31.68 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcCccc------ccCcCC---CCcEEEEeCCHH---HHHHHHHHhc-------------------------
Q psy13086 15 CEKKVEFVDVGCGKL------YLPMFP---STLILGLEIRVK---VSDYVIDEWS------------------------- 57 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G------la~~~p---~~~v~GiDis~~---~l~~a~~~~~------------------------- 57 (169)
++++.+|||+..-.| +...++ ...+++=|++.. |+.....+++
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 456899999999999 222232 237899999885 4444444332
Q ss_pred --cccceEEE--eCC-CCcccc--cchhh-----h-----cccHHHHHHHHHhccCCcEEEEEe
Q psy13086 58 --LYLKKMFF--LYP-DPHFKR--CKYKW-----R-----IINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 58 --~~~d~v~~--~f~-d~~f~~--~h~~~-----~-----~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..+|.|.. +++ |.++.. ..+++ + ..+-.+++.-.+.||+||+++-+|
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 12333332 221 221111 00111 0 123568999999999999998875
No 293
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=78.65 E-value=2.3 Score=32.66 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCCcEEEEEeCC
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
...+.++.++|||||.|++..+.
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeec
Confidence 46899999999999999998654
No 294
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.05 E-value=1.7 Score=33.27 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.5
Q ss_pred cHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTITDVK 107 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~d~~ 107 (169)
....++++.|+|||||.+++..+..
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHhhcCCCeeEEEEecch
Confidence 3679999999999999999876543
No 295
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=77.92 E-value=2.3 Score=30.84 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=22.1
Q ss_pred EEcCccc-----c----cCcCCCCcEEEEeCCHHHHHHHHHH
Q psy13086 23 DVGCGKL-----Y----LPMFPSTLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 23 DiGCG~G-----l----a~~~p~~~v~GiDis~~~l~~a~~~ 55 (169)
|||+..| . +...+...++++|+++.+++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 2 2345788999999999999888877
No 296
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=77.44 E-value=0.8 Score=31.98 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=10.3
Q ss_pred EEEEcCccc--ccCcC
Q psy13086 21 FVDVGCGKL--YLPMF 34 (169)
Q Consensus 21 iLDiGCG~G--la~~~ 34 (169)
-+|||||.| +...+
T Consensus 6 NIDIGcG~GNTmda~f 21 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAF 21 (124)
T ss_pred ccccccCCCcchhhhh
Confidence 489999999 44443
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=76.92 E-value=4.3 Score=33.25 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCCcEEEEEeCChH
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDVKD 108 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~~~ 108 (169)
..+++++.|+|||||.+++..+...
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~~~~~~ 84 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIMNSTEN 84 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCchh
Confidence 5799999999999999999766544
No 298
>PRK13699 putative methylase; Provisional
Probab=76.67 E-value=5 Score=31.96 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCh
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDVK 107 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~~ 107 (169)
...+++++|+|||||.+++-.+..
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~ 75 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWN 75 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccc
Confidence 578999999999999998755443
No 299
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=76.11 E-value=13 Score=30.01 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=46.9
Q ss_pred CcCCCCcEEEEeCCHHHHHHHHHH-hc----------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEE
Q psy13086 32 PMFPSTLILGLEIRVKVSDYVIDE-WS----------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIV 100 (169)
Q Consensus 32 ~~~p~~~v~GiDis~~~l~~a~~~-~~----------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l 100 (169)
+..++..|+|+|.++..++.|++. +. ...|.|.+.-|-. ...++++++...|++|+.+
T Consensus 7 ~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-----------~~~~~l~~~~~~~~~~~iv 75 (258)
T PF02153_consen 7 KAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-----------AIEDVLEEIAPYLKPGAIV 75 (258)
T ss_dssp HTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-----------HHHHHHHHHHCGS-TTSEE
T ss_pred hCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-----------HHHHHHHHhhhhcCCCcEE
Confidence 345678999999999999988643 11 3456655544322 1367999999999999888
Q ss_pred EEEeCCh-HHHHHHHHHHh
Q psy13086 101 YTITDVK-DLHDWIVSHFT 118 (169)
Q Consensus 101 ~i~~d~~-~~~~~~~~~~~ 118 (169)
.=++-.+ .....+.+.+.
T Consensus 76 ~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 76 TDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp EE--S-CHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHhcC
Confidence 7665554 34555665554
No 300
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.60 E-value=4.5 Score=28.27 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=41.7
Q ss_pred ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc----------ch-hhhcccHHHHHHHHHhccCCc
Q psy13086 30 YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC----------KY-KWRIINQNLLSEYAYVLSEGG 98 (169)
Q Consensus 30 la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~----------h~-~~~~~~~~~l~~~~rvLkpGG 98 (169)
+|+... .+++++|.++.-++.+++-- .+.+ +.+.+..+... .. ....-....++....+|+|+|
T Consensus 9 ~ak~~G-~~vi~~~~~~~k~~~~~~~G---a~~~-~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G 83 (130)
T PF00107_consen 9 LAKAMG-AKVIATDRSEEKLELAKELG---ADHV-IDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGG 83 (130)
T ss_dssp HHHHTT-SEEEEEESSHHHHHHHHHTT---ESEE-EETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEE
T ss_pred HHHHcC-CEEEEEECCHHHHHHHHhhc---cccc-ccccccccccccccccccccceEEEEecCcHHHHHHHHHHhccCC
Confidence 455555 89999999998888887531 2221 11211111100 00 000012689999999999999
Q ss_pred EEEEEe
Q psy13086 99 IVYTIT 104 (169)
Q Consensus 99 ~l~i~~ 104 (169)
++.+..
T Consensus 84 ~~v~vg 89 (130)
T PF00107_consen 84 RIVVVG 89 (130)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 999874
No 301
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.53 E-value=2.3 Score=34.79 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCCeEEEEcCccc-----ccCcC-----CCCcEEEEeCCH
Q psy13086 17 KKVEFVDVGCGKL-----YLPMF-----PSTLILGLEIRV 46 (169)
Q Consensus 17 ~~~~iLDiGCG~G-----la~~~-----p~~~v~GiDis~ 46 (169)
++..++|+|||.| ++... +...++-||-..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3678999999999 44444 456899999854
No 302
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=75.45 E-value=2.4 Score=37.84 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=23.2
Q ss_pred cHHHHHHHHHhccCCcEEEEEeCChHHHHHHHH
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVS 115 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~ 115 (169)
...++-|+-|+|+|||.++|.++ .+....+..
T Consensus 446 ~~~illEmDRILRP~G~~iiRD~-~~vl~~v~~ 477 (506)
T PF03141_consen 446 MEDILLEMDRILRPGGWVIIRDT-VDVLEKVKK 477 (506)
T ss_pred HHHHHHHhHhhcCCCceEEEecc-HHHHHHHHH
Confidence 36799999999999999998653 333333433
No 303
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=74.75 E-value=14 Score=32.34 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCeEEEEcCccc---ccCcC--CCCcEEEEeCCHHHHHHHHH---------------------Hhc--------cccceE
Q psy13086 18 KVEFVDVGCGKL---YLPMF--PSTLILGLEIRVKVSDYVID---------------------EWS--------LYLKKM 63 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~--p~~~v~GiDis~~~l~~a~~---------------------~~~--------~~~d~v 63 (169)
..+|==||=|.= +|..+ .+..|+|+||++..++.... +++ ...|.+
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 356777777763 55544 45799999999987776531 111 245555
Q ss_pred EEeCCCCcccccchhhhc-ccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 64 FFLYPDPHFKRCKYKWRI-INQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 64 ~~~f~d~~f~~~h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
.+..|.|--+. ....+ ......+.++.+||+|-.+++.+.
T Consensus 89 iI~VPTPl~~~--~~pDls~v~~aa~sIa~~L~kG~LVIlEST 129 (436)
T COG0677 89 IICVPTPLKKY--REPDLSYVESAARSIAPVLKKGDLVILEST 129 (436)
T ss_pred EEEecCCcCCC--CCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 56666663221 11111 136788999999999999999753
No 304
>PRK10742 putative methyltransferase; Provisional
Probab=74.61 E-value=5.9 Score=32.30 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=25.8
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHH
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVI 53 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~ 53 (169)
++|||.=+|+| ++.+ ++.|+++|-++.+....+
T Consensus 90 p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~ 127 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLD 127 (250)
T ss_pred CEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 48999999999 4444 678999999997655443
No 305
>KOG0024|consensus
Probab=74.51 E-value=9.3 Score=32.54 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc----------------cceEEE-eCCCCcc
Q psy13086 17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY----------------LKKMFF-LYPDPHF 72 (169)
Q Consensus 17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~-~~----------------~d~v~~-~f~d~~f 72 (169)
++.++|=+|+|.= .|+.+....|+.+|++++-++.|++ +- .. ++...- ..+|-.|
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 4688999999963 6677777899999999999999987 32 00 000000 1123233
Q ss_pred cccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 73 KRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 73 ~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+.. ..+..++.....||+||++.++.
T Consensus 248 dCs------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 248 DCS------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred Ecc------CchHHHHHHHHHhccCCEEEEec
Confidence 321 12456777788999999988764
No 306
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.85 E-value=19 Score=29.79 Aligned_cols=82 Identities=9% Similarity=0.097 Sum_probs=45.9
Q ss_pred CCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccccc---hhhhc-----c
Q psy13086 18 KVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCK---YKWRI-----I 82 (169)
Q Consensus 18 ~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~h---~~~~~-----~ 82 (169)
+.+||=+||| | +|+......++++|.+++-++.|++ +. .+.+ +.+.+..+.... -.-++ -
T Consensus 170 g~~VlV~G~G-~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lG--a~~v-i~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 170 GKRVFVSGVG-PIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MG--ADKL-VNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cC--CcEE-ecCCcccHHHHhccCCCCCEEEECCC
Confidence 5678878874 4 3444322379999999988888765 21 1111 111111000000 00000 0
Q ss_pred cHHHHHHHHHhccCCcEEEEEe
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
.+..++...+.|++||++++..
T Consensus 245 ~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 245 HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CHHHHHHHHHHhhcCCEEEEEc
Confidence 2467888999999999998863
No 307
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=73.08 E-value=2.2 Score=32.25 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=18.7
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCH
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRV 46 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~ 46 (169)
.-|||+|=|+| |-+.+|+..++.+|-.-
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l 62 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRAL 62 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS-
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeec
Confidence 45999999999 88889999999999753
No 308
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=71.60 E-value=18 Score=31.17 Aligned_cols=82 Identities=5% Similarity=0.060 Sum_probs=45.7
Q ss_pred CCcEEEEeCCHHHHHHHHHH-------------------hc---------cccceEEEeCCCCcccccchhhhc-ccHHH
Q psy13086 36 STLILGLEIRVKVSDYVIDE-------------------WS---------LYLKKMFFLYPDPHFKRCKYKWRI-INQNL 86 (169)
Q Consensus 36 ~~~v~GiDis~~~l~~a~~~-------------------~~---------~~~d~v~~~f~d~~f~~~h~~~~~-~~~~~ 86 (169)
+.+|+|+|+++.-++.+++. +. ...|.+.+..|.|.-... ....+ ...++
T Consensus 22 G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~-~~~dl~~v~~v 100 (388)
T PRK15057 22 NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKT-NYFNTSSVESV 100 (388)
T ss_pred CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCC-CCcChHHHHHH
Confidence 47899999999988876541 10 234555556666531110 00000 01356
Q ss_pred HHHHHHhccCCcEEEEEeC-ChHHHHHHHHHHhc
Q psy13086 87 LSEYAYVLSEGGIVYTITD-VKDLHDWIVSHFTE 119 (169)
Q Consensus 87 l~~~~rvLkpGG~l~i~~d-~~~~~~~~~~~~~~ 119 (169)
++.+.+ +++|..+++.|- .+...+.+...+.+
T Consensus 101 ~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~ 133 (388)
T PRK15057 101 IKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT 133 (388)
T ss_pred HHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc
Confidence 677777 788877776653 34445545554443
No 309
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=69.61 E-value=26 Score=28.31 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=47.3
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc------cchhhhc---
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR------CKYKWRI--- 81 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~------~h~~~~~--- 81 (169)
++.+||..|||. | +|+.. +.++++++.++...+.+++. . ++.+. ...++.... ......+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~-g--~~~~~-~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL-G--ADEVL-NSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-C--CCEEE-cCCCcCHHHHHHHhcCCCceEEEEC
Confidence 356788888763 4 44443 46799999999888877542 1 22211 111110000 0000000
Q ss_pred c-cHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 I-NQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ~-~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
+ ....++++.+.|+++|+++...
T Consensus 240 ~g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 240 VGTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEEC
Confidence 0 2568899999999999998763
No 310
>KOG1252|consensus
Probab=69.37 E-value=3.2 Score=35.36 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=28.2
Q ss_pred CCCCCeEEEEcCccc---------ccCcCCCCcEEEEeCCHHHH
Q psy13086 15 CEKKVEFVDVGCGKL---------YLPMFPSTLILGLEIRVKVS 49 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G---------la~~~p~~~v~GiDis~~~l 49 (169)
+.+...++-.|.||| +.+++|+.+|+|+|.....+
T Consensus 209 ~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~ 252 (362)
T KOG1252|consen 209 LDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIV 252 (362)
T ss_pred hcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCccee
Confidence 334566888999999 67788999999999987643
No 311
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=69.07 E-value=2.9 Score=36.22 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=15.9
Q ss_pred HHHHHHHHhccCCcEEEEEe
Q psy13086 85 NLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~~ 104 (169)
.||+.=++-|+|||+++++.
T Consensus 218 ~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 218 GFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHHHHHhccCcEEEEEE
Confidence 46666677899999999974
No 312
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=67.85 E-value=24 Score=28.78 Aligned_cols=78 Identities=13% Similarity=-0.032 Sum_probs=42.4
Q ss_pred CCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEE-Ee-CCCCcccccchhhhcccHHHHHH
Q psy13086 18 KVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMF-FL-YPDPHFKRCKYKWRIINQNLLSE 89 (169)
Q Consensus 18 ~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~-~~-f~d~~f~~~h~~~~~~~~~~l~~ 89 (169)
..++|=+|||. | +|+...-..++++|.++..++.|.+.. .++.-. .. -.|-.++.. -.+..++.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~------G~~~~~~~ 216 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDAS------GDPSLIDT 216 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECC------CCHHHHHH
Confidence 45677778752 1 445544335778898887776664321 010000 00 000011110 12457888
Q ss_pred HHHhccCCcEEEEE
Q psy13086 90 YAYVLSEGGIVYTI 103 (169)
Q Consensus 90 ~~rvLkpGG~l~i~ 103 (169)
..+.|++||++.+.
T Consensus 217 ~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 217 LVRRLAKGGEIVLA 230 (308)
T ss_pred HHHhhhcCcEEEEE
Confidence 89999999999875
No 313
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=67.55 E-value=7.4 Score=33.39 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCccc---------ccCcC---CCCcEEEEeC----CHHHHHHHHHHhc
Q psy13086 16 EKKVEFVDVGCGKL---------YLPMF---PSTLILGLEI----RVKVSDYVIDEWS 57 (169)
Q Consensus 16 ~~~~~iLDiGCG~G---------la~~~---p~~~v~GiDi----s~~~l~~a~~~~~ 57 (169)
++.-.|+|+|.|.| ||.+. |..+++||+. +..-++.+.+++.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 34678999999999 66653 5679999999 7777776666543
No 314
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=67.28 E-value=23 Score=30.75 Aligned_cols=99 Identities=13% Similarity=0.137 Sum_probs=58.1
Q ss_pred CCeEEEEcCccc---ccCcC--CCCcEEEEeCCHHHHHHHHHH---------------------hc-----cccceEEEe
Q psy13086 18 KVEFVDVGCGKL---YLPMF--PSTLILGLEIRVKVSDYVIDE---------------------WS-----LYLKKMFFL 66 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~--p~~~v~GiDis~~~l~~a~~~---------------------~~-----~~~d~v~~~ 66 (169)
..+|-=||.|.- +|..+ .+.+|+|+|+++..++..+.. +. ...|.+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 356777888865 44332 346899999999877753210 00 245777777
Q ss_pred CCCCcccccch-hhhcccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHHh
Q psy13086 67 YPDPHFKRCKY-KWRIINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHFT 118 (169)
Q Consensus 67 f~d~~f~~~h~-~~~~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~~ 118 (169)
.|.|.-..... .. .....++.+...|++|-.+++.|.. +...+.+...+.
T Consensus 83 vptp~~~~~~~dl~--~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 83 VPTPFKGDHEPDLT--YVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLA 134 (415)
T ss_pred cCCCCCCCCCcChH--HHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 77763111000 00 1245678889999998888776543 334443443333
No 315
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.94 E-value=42 Score=25.80 Aligned_cols=81 Identities=9% Similarity=0.043 Sum_probs=46.6
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCc------------ccccchh
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPH------------FKRCKYK 78 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~------------f~~~h~~ 78 (169)
++.+||-.|+|+ | +++. -+.++++++.++...+.+++.- .+.+ +...++. ++..-
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g---~~~~-~~~~~~~~~~~~~~~~~~~~d~vi-- 206 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKA-AGARVIVTDRSDEKLELAKELG---ADHV-IDYKEEDLEEELRLTGGGGADVVI-- 206 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHHhC---Ccee-ccCCcCCHHHHHHHhcCCCCCEEE--
Confidence 467899999985 6 3333 3478999999987777765421 1111 0111110 11000
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
...-....+..+.+.|+++|+++...
T Consensus 207 ~~~~~~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 207 DAVGGPETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ECCCCHHHHHHHHHhcccCCEEEEEc
Confidence 00001257788889999999998764
No 316
>KOG1098|consensus
Probab=64.93 E-value=3.6 Score=37.82 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=24.6
Q ss_pred CCCCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCH
Q psy13086 15 CEKKVEFVDVGCGKL-----YLPMFP-STLILGLEIRV 46 (169)
Q Consensus 15 ~~~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~ 46 (169)
+++...|||+||-.| .++..| +.-|+|||+-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 355788999999999 334444 56899999987
No 317
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=62.45 E-value=5.5 Score=33.56 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=18.4
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q psy13086 84 QNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~ 104 (169)
-+||..+..+++||-.|.|+.
T Consensus 222 t~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 222 TKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred HHHHHHHHhhcCCCcEEEEEc
Confidence 469999999999999998874
No 318
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=62.08 E-value=9.4 Score=31.15 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=28.2
Q ss_pred eEEEEcCccc-c--cCcCCC-CcEEEEeCCHHHHHHHHHHhc
Q psy13086 20 EFVDVGCGKL-Y--LPMFPS-TLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 20 ~iLDiGCG~G-l--a~~~p~-~~v~GiDis~~~l~~a~~~~~ 57 (169)
+++|+-||.| + +-...+ ..+.++|+++.+++..+.|.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 5899999999 2 222222 367899999999998887754
No 319
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=61.23 E-value=46 Score=27.57 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=45.5
Q ss_pred CCeEEEEcCccc------ccCc-CCCCcEEEEeCCHHHHHHHHHHhcc-----------ccceEEEeCCCCcccccchhh
Q psy13086 18 KVEFVDVGCGKL------YLPM-FPSTLILGLEIRVKVSDYVIDEWSL-----------YLKKMFFLYPDPHFKRCKYKW 79 (169)
Q Consensus 18 ~~~iLDiGCG~G------la~~-~p~~~v~GiDis~~~l~~a~~~~~~-----------~~d~v~~~f~d~~f~~~h~~~ 79 (169)
+.+||=+|||.= +++. ....+++++|.++.-++.|++ +.. .+|.+ ++..-..
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~~~~~~~~~~~g~d~v--------iD~~G~~- 233 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADETYLIDDIPEDLAVDHA--------FECVGGR- 233 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCceeehhhhhhccCCcEE--------EECCCCC-
Confidence 578998998532 3343 445689999999877777654 210 01111 1110000
Q ss_pred hcccHHHHHHHHHhccCCcEEEEE
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
..+..+.+..++|++||++++.
T Consensus 234 --~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 234 --GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred --ccHHHHHHHHHhCcCCcEEEEE
Confidence 0246788899999999999875
No 320
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=60.98 E-value=18 Score=26.19 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=32.1
Q ss_pred cccceEEEe-CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086 58 LYLKKMFFL-YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE 125 (169)
Q Consensus 58 ~~~d~v~~~-f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~ 125 (169)
..+|.+++. |+ |.-. ..+-..++++.++++++|||++.--|-. ..++..+...+ |..
T Consensus 49 ~~~Da~ylDgFs-P~~n-----PelWs~e~~~~l~~~~~~~~~l~Tys~a----~~Vr~~L~~aG-F~v 106 (124)
T PF05430_consen 49 ARFDAWYLDGFS-PAKN-----PELWSEELFKKLARLSKPGGTLATYSSA----GAVRRALQQAG-FEV 106 (124)
T ss_dssp T-EEEEEE-SS--TTTS-----GGGSSHHHHHHHHHHEEEEEEEEES--B----HHHHHHHHHCT-EEE
T ss_pred ccCCEEEecCCC-CcCC-----cccCCHHHHHHHHHHhCCCcEEEEeech----HHHHHHHHHcC-CEE
Confidence 567887764 32 2111 1233578999999999999988653322 22445555443 443
No 321
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=59.91 E-value=10 Score=31.85 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.8
Q ss_pred HHHHHHHHHhccCCcEEEEEeC
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d 105 (169)
..+|..+..+|+|||++.+.|-
T Consensus 220 ~~~L~~~~~~L~~gGrl~VISf 241 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSIISF 241 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEEec
Confidence 6799999999999999999873
No 322
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=59.80 E-value=52 Score=22.34 Aligned_cols=65 Identities=9% Similarity=0.000 Sum_probs=37.7
Q ss_pred CcEEEEeCCHHHHHHHHHHhc------------------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCc
Q psy13086 37 TLILGLEIRVKVSDYVIDEWS------------------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGG 98 (169)
Q Consensus 37 ~~v~GiDis~~~l~~a~~~~~------------------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG 98 (169)
..++.+|.+++.++.+++..- ...+.+.+..+++. ..-.+....|-+.|..
T Consensus 22 ~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~-----------~n~~~~~~~r~~~~~~ 90 (116)
T PF02254_consen 22 IDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE-----------ENLLIALLARELNPDI 90 (116)
T ss_dssp SEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH-----------HHHHHHHHHHHHTTTS
T ss_pred CEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH-----------HHHHHHHHHHHHCCCC
Confidence 589999999999888875421 23333333322211 1224444556666777
Q ss_pred EEEEEeCChHHHHH
Q psy13086 99 IVYTITDVKDLHDW 112 (169)
Q Consensus 99 ~l~i~~d~~~~~~~ 112 (169)
.++.....+.+...
T Consensus 91 ~ii~~~~~~~~~~~ 104 (116)
T PF02254_consen 91 RIIARVNDPENAEL 104 (116)
T ss_dssp EEEEEESSHHHHHH
T ss_pred eEEEEECCHHHHHH
Confidence 77776666665543
No 323
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=59.52 E-value=95 Score=25.25 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=24.2
Q ss_pred CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~ 55 (169)
+.+||-||=..- +|...+..+|+-+||++.++++.++.
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~ 86 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRV 86 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHH
Confidence 578999985555 44445668999999999999987653
No 324
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=58.11 E-value=13 Score=30.04 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=34.6
Q ss_pred CCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+..|||-=+|+| ++...-+..++|+|+++..++.+.+|+.
T Consensus 223 ~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 223 GDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred CCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHH
Confidence 688999999999 5555567799999999999999998876
No 325
>KOG2798|consensus
Probab=57.67 E-value=23 Score=30.17 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=16.1
Q ss_pred HHHHHHHHHhccCCcEEEE
Q psy13086 84 QNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i 102 (169)
-+.++.+..+|||||..+=
T Consensus 276 leYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 276 LEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred HHHHHHHHHhccCCcEEEe
Confidence 4689999999999998753
No 326
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.33 E-value=26 Score=32.69 Aligned_cols=38 Identities=8% Similarity=-0.145 Sum_probs=28.6
Q ss_pred CeEEEEcCcc-c--ccCc---CCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 19 VEFVDVGCGK-L--YLPM---FPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 19 ~~iLDiGCG~-G--la~~---~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
.+|.=||+|+ | +|.. ..+..|+-+|++++.++.+.+++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~ 353 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYS 353 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 5788899988 4 4443 34789999999999888876543
No 327
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=55.01 E-value=47 Score=26.91 Aligned_cols=91 Identities=9% Similarity=0.013 Sum_probs=50.2
Q ss_pred eEEEEcCcc-c--ccCcC--CCCcEEEEeCCHHHHHHHHHH-hc---------cccceEEEeCCCCcccccchhhhcccH
Q psy13086 20 EFVDVGCGK-L--YLPMF--PSTLILGLEIRVKVSDYVIDE-WS---------LYLKKMFFLYPDPHFKRCKYKWRIINQ 84 (169)
Q Consensus 20 ~iLDiGCG~-G--la~~~--p~~~v~GiDis~~~l~~a~~~-~~---------~~~d~v~~~f~d~~f~~~h~~~~~~~~ 84 (169)
+|-=||+|. | ++... .+.+|++.|.++..++.+.+. +. ...|.|.+..|++.. . .
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~-----~-----~ 73 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPH-----V-----K 73 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHH-----H-----H
Confidence 466678886 4 44332 356899999998776655431 10 456777766665321 0 1
Q ss_pred HHH---HHHHHhccCCcEEEEE-eCChHHHHHHHHHHhcC
Q psy13086 85 NLL---SEYAYVLSEGGIVYTI-TDVKDLHDWIVSHFTEH 120 (169)
Q Consensus 85 ~~l---~~~~rvLkpGG~l~i~-~d~~~~~~~~~~~~~~~ 120 (169)
..+ ..+...+++|-.++-. |-.+.....+.+.+..+
T Consensus 74 ~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~ 113 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK 113 (296)
T ss_pred HHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc
Confidence 222 3355667776666533 33444455555555443
No 328
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=54.63 E-value=14 Score=30.83 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.8
Q ss_pred HHHHHHHHHhccCCcEEEEEeC
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d 105 (169)
..+|..+..+|+|||++.+.|-
T Consensus 216 ~~~L~~~~~~L~~gGrl~visf 237 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVISF 237 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEEec
Confidence 6699999999999999999873
No 329
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=53.44 E-value=84 Score=26.23 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=45.3
Q ss_pred CCCeEEEEcCccc-------ccCcCCCC-cEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcc-cccc-h---hhhc-c
Q psy13086 17 KKVEFVDVGCGKL-------YLPMFPST-LILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHF-KRCK-Y---KWRI-I 82 (169)
Q Consensus 17 ~~~~iLDiGCG~G-------la~~~p~~-~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f-~~~h-~---~~~~-~ 82 (169)
++.+||=.|+| + +|+.. ++ .|+++|.++.-++.|++- . .+.+ +.+.++.+ +... . .-++ +
T Consensus 191 ~g~~VlV~G~G-~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~-G--a~~~-i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 191 PGQSVAVVGLG-GVGLSALLGAVAA-GASQVVAVDLNEDKLALAREL-G--ATAT-VNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHc-C--CceE-eCCCchhHHHHHHHHhCCCCCEEE
Confidence 35667778875 4 34443 45 699999999887777542 1 1211 11111100 0000 0 0001 0
Q ss_pred ----cHHHHHHHHHhccCCcEEEEEe
Q psy13086 83 ----NQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 83 ----~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....++...+.|+++|++++..
T Consensus 265 d~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 265 EMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred ECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 2467888899999999998753
No 330
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=53.39 E-value=38 Score=25.04 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=52.1
Q ss_pred EEEEcCccc---ccCcC--CCCcEEEEeCCHHHHHHHHHHh-c---------cccceEEEeCCCCcccccchhhhcccHH
Q psy13086 21 FVDVGCGKL---YLPMF--PSTLILGLEIRVKVSDYVIDEW-S---------LYLKKMFFLYPDPHFKRCKYKWRIINQN 85 (169)
Q Consensus 21 iLDiGCG~G---la~~~--p~~~v~GiDis~~~l~~a~~~~-~---------~~~d~v~~~f~d~~f~~~h~~~~~~~~~ 85 (169)
|-=||+|.= ++... .+..|++.|.++..++.+.+.- . ...|.|.+..+++.- ..+
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~----------v~~ 73 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDA----------VEA 73 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHH----------HHH
T ss_pred EEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchh----------hhh
Confidence 444677653 44432 4578999999998777665431 1 456777777666420 135
Q ss_pred HHHH--HHHhccCCcEEEEEe-CChHHHHHHHHHHhcCC
Q psy13086 86 LLSE--YAYVLSEGGIVYTIT-DVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 86 ~l~~--~~rvLkpGG~l~i~~-d~~~~~~~~~~~~~~~~ 121 (169)
++.. +...|++|..++-.+ -.+.....+.+.+..++
T Consensus 74 v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g 112 (163)
T PF03446_consen 74 VLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG 112 (163)
T ss_dssp HHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT
T ss_pred hhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc
Confidence 6666 777788887776554 34555666666666554
No 331
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=52.72 E-value=44 Score=29.87 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCccc-cc----CcCCCCcEE------EEeCCHHHHHHHHHH------h---ccccceEEEeCCCCccccc
Q psy13086 16 EKKVEFVDVGCGKL-YL----PMFPSTLIL------GLEIRVKVSDYVIDE------W---SLYLKKMFFLYPDPHFKRC 75 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-la----~~~p~~~v~------GiDis~~~l~~a~~~------~---~~~~d~v~~~f~d~~f~~~ 75 (169)
.++.+|+=||||.= .+ .+-.+.+++ +||......+.|.+. + -...|.|.+.-||..
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~---- 109 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQ---- 109 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHH----
Confidence 45789999999984 22 222345666 555556666665432 1 145677777777641
Q ss_pred chhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 76 KYKWRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
+..+.+++...||||..|.++
T Consensus 110 -------q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 110 -------HSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred -------HHHHHHHHHhhCCCCCEEEec
Confidence 245668999999999999995
No 332
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=51.93 E-value=92 Score=24.83 Aligned_cols=80 Identities=9% Similarity=-0.047 Sum_probs=43.9
Q ss_pred CCeEEEEcCccc------ccCcCCCCc-EEEEeCCHHHHHHHHHHhccccceEEEeCCCCc-----------ccccchhh
Q psy13086 18 KVEFVDVGCGKL------YLPMFPSTL-ILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPH-----------FKRCKYKW 79 (169)
Q Consensus 18 ~~~iLDiGCG~G------la~~~p~~~-v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~-----------f~~~h~~~ 79 (169)
+.+||=+|+|+= +|+.. +.. ++++|.++.-++.|++- . .+.+. ...++. ++.. ..
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~-G--a~~~i-~~~~~~~~~~~~~~~~g~d~v--id 193 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSF-G--ATALA-EPEVLAERQGGLQNGRGVDVA--LE 193 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHc-C--CcEec-CchhhHHHHHHHhCCCCCCEE--EE
Confidence 567887887421 44443 444 99999998777766542 1 11110 000000 0000 00
Q ss_pred hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..-....+++..+.|+|+|++++..
T Consensus 194 ~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 194 FSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCChHHHHHHHHHhcCCCEEEEec
Confidence 0002567888999999999998754
No 333
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=51.08 E-value=71 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCCeEEEEcCccc--------ccCcC-CCCcEEEEeCCHHHHHHH
Q psy13086 17 KKVEFVDVGCGKL--------YLPMF-PSTLILGLEIRVKVSDYV 52 (169)
Q Consensus 17 ~~~~iLDiGCG~G--------la~~~-p~~~v~GiDis~~~l~~a 52 (169)
++.+|+|+|.-.| .+... ....|+|+||+-.-+..+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~ 113 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPA 113 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChh
Confidence 3678999999999 11222 346999999997655443
No 334
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=50.26 E-value=1e+02 Score=25.55 Aligned_cols=82 Identities=10% Similarity=0.122 Sum_probs=45.5
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhccccceEEEeCCCC-cccccc---h---hhhc-
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPST-LILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDP-HFKRCK---Y---KWRI- 81 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~-~f~~~h---~---~~~~- 81 (169)
++.+||=.|||. | +|+.. ++ .++++|.++.-.+.+++ +. .|.+. .+.++ +..... . ...+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~-~G--a~~~i-~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE-FG--ATHTV-NSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-cC--CceEE-cCCCcCHHHHHHHHhCCCCCCEEE
Confidence 467788888742 1 44444 45 59999999887777753 21 12211 11111 100000 0 0000
Q ss_pred ---ccHHHHHHHHHhccCCcEEEEE
Q psy13086 82 ---INQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 82 ---~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
-.+..+++..+.|++||++++.
T Consensus 251 d~~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 DAVGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEE
Confidence 1246788888999999999875
No 335
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=49.21 E-value=13 Score=31.34 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.5
Q ss_pred HHHHHHHHHhccCCcEEEEEeCC
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
..+|..+..+|+|||++.+.|--
T Consensus 221 ~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHhcCCcEEEEEEec
Confidence 67999999999999999998854
No 336
>KOG2671|consensus
Probab=48.77 E-value=18 Score=31.28 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=27.2
Q ss_pred CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHH
Q psy13086 17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDY 51 (169)
Q Consensus 17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~ 51 (169)
++..|.|==.||| ++...=++.|+|.||+-.|+..
T Consensus 208 pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vra 245 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRA 245 (421)
T ss_pred CCCEEecCccccCceeeehhhhcceeeccccchheeec
Confidence 3678999888888 4444346799999999998874
No 337
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=48.17 E-value=60 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=28.7
Q ss_pred CeEEEEcCcc-c--ccCc--CCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 19 VEFVDVGCGK-L--YLPM--FPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 19 ~~iLDiGCG~-G--la~~--~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
.+|.=||+|+ | +|.. ..+..|+-+|++++.++.+.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~ 356 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEA 356 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 5688899998 4 4432 34789999999999988876543
No 338
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=48.06 E-value=93 Score=25.25 Aligned_cols=82 Identities=10% Similarity=-0.018 Sum_probs=45.7
Q ss_pred CCeEEEEcCcc-c-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc----cchhhhcc----
Q psy13086 18 KVEFVDVGCGK-L-----YLPMFPST-LILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR----CKYKWRII---- 82 (169)
Q Consensus 18 ~~~iLDiGCG~-G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~----~h~~~~~~---- 82 (169)
+.+||-.|||. | +++.. +. .+++++.++...+.+++. . .+.+. ...++.... .+...-++
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~-g--~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAM-G--ADETV-NLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-C--CCEEE-cCCchhhhhhhccCCCccEEEECCC
Confidence 56788888864 3 34443 44 799999998887765542 1 12211 111110000 00000011
Q ss_pred cHHHHHHHHHhccCCcEEEEEe
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....++++.+.|+++|+++...
T Consensus 241 ~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CHHHHHHHHHHHhcCCEEEEEe
Confidence 1457889999999999998653
No 339
>KOG2078|consensus
Probab=47.79 E-value=16 Score=32.28 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=34.1
Q ss_pred CCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 18 KVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
+..|-|+=||-| +.....++.|++-|.+++|++..+.+++
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIK 292 (495)
T ss_pred cchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcc
Confidence 578999999999 4344556999999999999999988776
No 340
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=47.32 E-value=1.1e+02 Score=25.25 Aligned_cols=81 Identities=9% Similarity=-0.071 Sum_probs=46.9
Q ss_pred CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCC---cccccchhhhcccHHHH
Q psy13086 17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDP---HFKRCKYKWRIINQNLL 87 (169)
Q Consensus 17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~---~f~~~h~~~~~~~~~~l 87 (169)
++.+||=.|+|.- +|+. -++++++++.++.-++.|++- ..|.+. ...+. .++..- .-......+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~-~G~~vi~~~~~~~~~~~a~~~---Ga~~vi-~~~~~~~~~~d~~i--~~~~~~~~~ 237 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALA-QGATVHVMTRGAAARRLALAL---GAASAG-GAYDTPPEPLDAAI--LFAPAGGLV 237 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHHh---CCceec-cccccCcccceEEE--ECCCcHHHH
Confidence 4678898897532 3344 356899999998877777652 112111 00010 111100 000124578
Q ss_pred HHHHHhccCCcEEEEEe
Q psy13086 88 SEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 88 ~~~~rvLkpGG~l~i~~ 104 (169)
....+.|++||++.+.-
T Consensus 238 ~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 238 PPALEALDRGGVLAVAG 254 (329)
T ss_pred HHHHHhhCCCcEEEEEe
Confidence 88899999999998753
No 341
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=47.30 E-value=41 Score=27.71 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=57.9
Q ss_pred CCeEEEEcCcc-c------ccCcCCCCcEEEEeCCHHHHHHHHH---------Hh--c--cccceEEEeCCCCcccccch
Q psy13086 18 KVEFVDVGCGK-L------YLPMFPSTLILGLEIRVKVSDYVID---------EW--S--LYLKKMFFLYPDPHFKRCKY 77 (169)
Q Consensus 18 ~~~iLDiGCG~-G------la~~~p~~~v~GiDis~~~l~~a~~---------~~--~--~~~d~v~~~f~d~~f~~~h~ 77 (169)
..+|+=+|.|- | +........++|.|.+...++.+.+ +. . ...|.|.+..|-..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~------ 76 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA------ 76 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH------
Confidence 35567777653 2 3334455678999999987777752 11 1 34566665544321
Q ss_pred hhhcccHHHHHHHHHhccCCcEEEEEeCCh-HHHHHHHHHH-------hcCCCcee
Q psy13086 78 KWRIINQNLLSEYAYVLSEGGIVYTITDVK-DLHDWIVSHF-------TEHPLFVE 125 (169)
Q Consensus 78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~-~~~~~~~~~~-------~~~~~f~~ 125 (169)
..++++++...|++|..+.=++-.+ ...+.+.... ..||.|-.
T Consensus 77 -----~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~ 127 (279)
T COG0287 77 -----TEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGP 127 (279)
T ss_pred -----HHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCC
Confidence 3679999999999998775433222 2333344333 34776655
No 342
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=47.30 E-value=1.2e+02 Score=26.49 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=51.8
Q ss_pred CCeEEEEcCccc---ccCcC-CCCcEEEEeCCHHHHHHHHHH-----------------hc--------cccceEEEeCC
Q psy13086 18 KVEFVDVGCGKL---YLPMF-PSTLILGLEIRVKVSDYVIDE-----------------WS--------LYLKKMFFLYP 68 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~-p~~~v~GiDis~~~l~~a~~~-----------------~~--------~~~d~v~~~f~ 68 (169)
..+|-=||.|.= +|..+ ...+|+|+|+++.-++..++. +. ...|.+++..|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 355666766653 33322 236899999999888776511 11 45677777778
Q ss_pred CCcccccch-hhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086 69 DPHFKRCKY-KWRIINQNLLSEYAYVLSEGGIVYTITD 105 (169)
Q Consensus 69 d~~f~~~h~-~~~~~~~~~l~~~~rvLkpGG~l~i~~d 105 (169)
+|.-...+. ... .....+.+...|++|..+++.|-
T Consensus 86 tp~~~~~~~dl~~--v~~a~~~i~~~l~~g~lVI~~ST 121 (425)
T PRK15182 86 TPINTYKQPDLTP--LIKASETVGTVLNRGDIVVYEST 121 (425)
T ss_pred CCCCCCCCcchHH--HHHHHHHHHHhcCCCCEEEEecC
Confidence 774211000 000 13456788899999988887653
No 343
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=46.91 E-value=1.2e+02 Score=25.30 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCC-Ccccc-cc--------hhh
Q psy13086 17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPD-PHFKR-CK--------YKW 79 (169)
Q Consensus 17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d-~~f~~-~h--------~~~ 79 (169)
++.+||=.|++.| +|+. -++++++++.++.-.+.+++.+. .|.+. .+.+ +.+.. .. ..-
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~-~G~~Vi~~~~~~~k~~~~~~~lG--a~~vi-~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKL-HGCYVVGSAGSSQKVDLLKNKLG--FDEAF-NYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHhcC--CCEEE-ECCCcccHHHHHHHHCCCCcEEEE
Confidence 4678998998655 4444 35689999999887777654332 22221 1211 11110 00 000
Q ss_pred hcccHHHHHHHHHhccCCcEEEEE
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
..+....+....+.|++||++++.
T Consensus 234 d~vG~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 234 DNVGGDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred ECCCHHHHHHHHHHhccCCEEEEE
Confidence 001245788899999999999865
No 344
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=46.31 E-value=34 Score=29.54 Aligned_cols=59 Identities=10% Similarity=-0.024 Sum_probs=36.1
Q ss_pred EEEeCCHHHHHHHHHHhc-cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 40 LGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 40 ~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..|.+....+..+.++++ +++|.+.+.=.-.|++.. ...+.++++.+.++|||++++.+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~------~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPE------QLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHH------HHHHHHHHHHHHhCCCCEEEEee
Confidence 445555544444444443 667765542222333321 13578999999999999999986
No 345
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=45.74 E-value=1.3e+02 Score=24.42 Aligned_cols=83 Identities=10% Similarity=0.124 Sum_probs=43.4
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcc-ccc------chhhhcc-
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHF-KRC------KYKWRII- 82 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f-~~~------h~~~~~~- 82 (169)
++.+||-.|+|. | +|+......+++++.+....+.+++. . .+.+. .+.++.+ ... .....++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g--~~~vi-~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-G--ATDII-NPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-C--CcEEE-cCCcchHHHHHHHHcCCCCCcEEEE
Confidence 356777777642 3 44544324788898887776665532 1 11111 1111100 000 0000001
Q ss_pred ---cHHHHHHHHHhccCCcEEEEE
Q psy13086 83 ---NQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 83 ---~~~~l~~~~rvLkpGG~l~i~ 103 (169)
....+++..+.|+++|+++..
T Consensus 243 ~~g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 243 AVGFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred ccCCHHHHHHHHHHhhcCCEEEEE
Confidence 135888999999999998764
No 346
>KOG0822|consensus
Probab=44.60 E-value=64 Score=29.52 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=49.5
Q ss_pred CeEEEEcCccc--------ccC-cCCCCcEEEEeCCHHHHHHHHHH-hccccceEEEeCCC------C--ccccc-----
Q psy13086 19 VEFVDVGCGKL--------YLP-MFPSTLILGLEIRVKVSDYVIDE-WSLYLKKMFFLYPD------P--HFKRC----- 75 (169)
Q Consensus 19 ~~iLDiGCG~G--------la~-~~p~~~v~GiDis~~~l~~a~~~-~~~~~d~v~~~f~d------~--~f~~~----- 75 (169)
..|+=+|.|-| .|. ......+++||-+++++...+.+ ...--+.|++.+.| | ..|-.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELL 448 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELL 448 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhh
Confidence 46888999999 222 23457899999999988776542 11111122332222 1 01100
Q ss_pred -chhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086 76 -KYKWRIINQNLLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 76 -h~~~~~~~~~~l~~~~rvLkpGG~l~i 102 (169)
..-..-.+++.|.-+.+.|||.|+.+=
T Consensus 449 GSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 449 GSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 000111358899999999999987754
No 347
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=44.50 E-value=24 Score=31.43 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCeEEEEcCccc---------ccCcCCCCcEEEEeCCHHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL---------YLPMFPSTLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 18 ~~~iLDiGCG~G---------la~~~p~~~v~GiDis~~~l~~a~~~ 55 (169)
..+|.|--||+| +.+..-+..+.|.|++..+...|+-+
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN 233 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMN 233 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHH
Confidence 468999999999 11111136899999999999888754
No 348
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=44.09 E-value=99 Score=25.10 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=25.1
Q ss_pred CeEEEEcCcc-c--ccCcC--CCCcEEEEeCCHHHHHHHHH
Q psy13086 19 VEFVDVGCGK-L--YLPMF--PSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 19 ~~iLDiGCG~-G--la~~~--p~~~v~GiDis~~~l~~a~~ 54 (169)
.+|-=||+|+ | +|..+ .+.+|+++|.++..++.+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 45 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLD 45 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 4577788884 4 44432 35799999999988776543
No 349
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=42.02 E-value=20 Score=29.93 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCeEEEEcCccc-----ccCcCCCCc----EEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccccchhhhcccHHHHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPSTL----ILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLS 88 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~~~----v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~ 88 (169)
..+|+=+|++.| |...|++.. ++.+|..+--.. +. .++.|.+. .+.+.++.++
T Consensus 59 ~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~-----l~-~l~~v~l~------------~~fftee~~~ 120 (294)
T PF01358_consen 59 PVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCIS-----LE-ELSNVTLI------------QRFFTEEYAR 120 (294)
T ss_dssp -EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GG-----GT-T-TTEEEE------------ES---HHHHH
T ss_pred ceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhh-----hc-ccCcEEee------------hhhCCHHHHH
Confidence 468999999999 777787755 999999874321 11 12223221 1233467888
Q ss_pred HHHHhccCCcEEEEEeCC
Q psy13086 89 EYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 89 ~~~rvLkpGG~l~i~~d~ 106 (169)
++...+.+ .+++.+|+
T Consensus 121 ~~~~~~~~--~illISDI 136 (294)
T PF01358_consen 121 RLRDKLNL--KILLISDI 136 (294)
T ss_dssp HHHHHHTT--EEEEEE--
T ss_pred HHHhhcCC--CeEEEEec
Confidence 88888777 44455555
No 350
>KOG1269|consensus
Probab=41.88 E-value=20 Score=30.83 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=36.3
Q ss_pred CCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHH
Q psy13086 3 WSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVI 53 (169)
Q Consensus 3 ~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~ 53 (169)
|+..|.+..- .....||+||+.+ +++.++-...-|+++....+..+.
T Consensus 170 ~~~~fedn~f----d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 170 GKMPFEDNTF----DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred hcCCCCcccc----CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 3455666531 1468999999999 778888889999999999888775
No 351
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=41.47 E-value=1.2e+02 Score=25.51 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
+.-|.++.+.|.|||.++++-+.++-......++....
T Consensus 53 e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~ 90 (300)
T COG2813 53 EFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYG 90 (300)
T ss_pred HHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhc
Confidence 56899999999999999999877776666666665543
No 352
>KOG2539|consensus
Probab=40.51 E-value=36 Score=30.37 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=28.0
Q ss_pred CCeEEEEcCccc-----ccCcCCC--CcEEEEeCCHHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL-----YLPMFPS--TLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 18 ~~~iLDiGCG~G-----la~~~p~--~~v~GiDis~~~l~~a~~~ 55 (169)
...++|+|.|.| +...+++ ..+.-||.|..|...+..+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~ 245 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKN 245 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHh
Confidence 467889999988 2233443 5789999999999887543
No 353
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=40.46 E-value=1.3e+02 Score=24.05 Aligned_cols=81 Identities=16% Similarity=0.054 Sum_probs=44.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCCC----cccccchhhhcccHHHHHHHHHhc--cCCcEEEEEeCCh
Q psy13086 35 PSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDP----HFKRCKYKWRIINQNLLSEYAYVL--SEGGIVYTITDVK 107 (169)
Q Consensus 35 p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~----~f~~~h~~~~~~~~~~l~~~~rvL--kpGG~l~i~~d~~ 107 (169)
|....|-||-+..--....+-+. ..+.-.++.++.| +...+....| ..+|+.+...+ +-.|.++|++|..
T Consensus 30 p~l~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~~~~~~~~~~rg~~qR---n~AL~~ir~~~~~~~~GVVyFADDdN 106 (223)
T cd00218 30 PPLHWIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDPTWLKPRGVEQR---NLALRWIREHLSAKLDGVVYFADDDN 106 (223)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHcCCceEEeccCCCCCcccCCcccHHHH---HHHHHHHHhccccCcceEEEEccCCC
Confidence 55667777766521111111111 2355556666544 2222222222 46788887776 7889999998877
Q ss_pred HHHHHHHHHHh
Q psy13086 108 DLHDWIVSHFT 118 (169)
Q Consensus 108 ~~~~~~~~~~~ 118 (169)
.|-..+.+.++
T Consensus 107 ~Ysl~lF~emR 117 (223)
T cd00218 107 TYDLELFEEMR 117 (223)
T ss_pred cccHHHHHHHh
Confidence 66444444444
No 354
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=39.53 E-value=72 Score=27.00 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=25.6
Q ss_pred HHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHh
Q psy13086 84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFT 118 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~ 118 (169)
...|.++.+.|+|||.++++-....-...+...+.
T Consensus 92 ~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~ 126 (342)
T PRK09489 92 QFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLA 126 (342)
T ss_pred HHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHH
Confidence 56899999999999999998765554443444443
No 355
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=38.66 E-value=1.4e+02 Score=27.20 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=45.4
Q ss_pred CeEEEEcCccc---ccCc--CCCCcEEEEeCCHHHHHHHHHHh-c-----------------cccceEEEeCCCCccccc
Q psy13086 19 VEFVDVGCGKL---YLPM--FPSTLILGLEIRVKVSDYVIDEW-S-----------------LYLKKMFFLYPDPHFKRC 75 (169)
Q Consensus 19 ~~iLDiGCG~G---la~~--~p~~~v~GiDis~~~l~~a~~~~-~-----------------~~~d~v~~~f~d~~f~~~ 75 (169)
..|+=+|+|.= +++. ..+..++.+|.+++.++.+++.- + ...+.+....+|+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~---- 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPE---- 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHH----
Confidence 45666666654 4432 23568999999999999887521 0 23334434444331
Q ss_pred chhhhcccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086 76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKD 108 (169)
Q Consensus 76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~ 108 (169)
....+-...|.+.|...++.....+.
T Consensus 477 -------~n~~i~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 477 -------DTMKIVELCQQHFPHLHILARARGRV 502 (601)
T ss_pred -------HHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 12233344566778888877655443
No 356
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=38.29 E-value=1.8e+02 Score=23.49 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=45.9
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcc-cccc-h-----hhhcc-
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHF-KRCK-Y-----KWRII- 82 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f-~~~h-~-----~~~~~- 82 (169)
++.+||-.|+|. | +|+. .+.+++++.-+++..+.+++. . .+.+. .+.++.+ ...+ . ..-++
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~-~g~~v~~~~~s~~~~~~~~~~-g--~~~v~-~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKA-RGARVIVVDIDDERLEFAREL-G--ADDTI-NVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCeEEEECCCHHHHHHHHHh-C--CCEEe-cCcccCHHHHHHHHhCCCCCCEEEE
Confidence 467888888763 3 4444 357899998888777766432 1 22211 1111100 0000 0 00000
Q ss_pred ---cHHHHHHHHHhccCCcEEEEEe
Q psy13086 83 ---NQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 83 ---~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....+.++.+.|+++|+++...
T Consensus 234 ~~g~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 234 ATGNPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 2467888999999999988653
No 357
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=38.07 E-value=1.7e+02 Score=25.77 Aligned_cols=87 Identities=8% Similarity=0.074 Sum_probs=50.4
Q ss_pred ccCcCCCCcEEEEeCCHHHHHHHHHH---------------------hc---------cccceEEEeCCCCcccccchhh
Q psy13086 30 YLPMFPSTLILGLEIRVKVSDYVIDE---------------------WS---------LYLKKMFFLYPDPHFKRCKYKW 79 (169)
Q Consensus 30 la~~~p~~~v~GiDis~~~l~~a~~~---------------------~~---------~~~d~v~~~f~d~~f~~~h~~~ 79 (169)
+|+. +..|+++|+++.-++..++. +. ...|.+++..+.|.-..-+.--
T Consensus 19 lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl 96 (414)
T COG1004 19 LAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADL 96 (414)
T ss_pred HHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccH
Confidence 4444 36999999999877766532 11 3445556655544321111000
Q ss_pred hcccHHHHHHHHHhccCCcEEEEEeCCh-HHHHHHHHHHhc
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTITDVK-DLHDWIVSHFTE 119 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~-~~~~~~~~~~~~ 119 (169)
+ ....+.+++...|+..-.+++.+.++ .+.+++...+.+
T Consensus 97 ~-~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~ 136 (414)
T COG1004 97 S-YVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIRE 136 (414)
T ss_pred H-HHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHh
Confidence 0 12578888999998887777665443 455656655543
No 358
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=37.89 E-value=3.3e+02 Score=25.06 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCeEEEEcCccccc-------Cc------CCCCcEEEEeCCH-HHHHHH-HHHhc--cccceEEEeCCCCcccccchhhh
Q psy13086 18 KVEFVDVGCGKLYL-------PM------FPSTLILGLEIRV-KVSDYV-IDEWS--LYLKKMFFLYPDPHFKRCKYKWR 80 (169)
Q Consensus 18 ~~~iLDiGCG~Gla-------~~------~p~~~v~GiDis~-~~l~~a-~~~~~--~~~d~v~~~f~d~~f~~~h~~~~ 80 (169)
...|+=||.|||+| .+ -+..-++|.--.. ..+=.- -+.+. +.+..+...|+-..-.+ .+...
T Consensus 453 ~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k-~YVQ~ 531 (600)
T PRK10953 453 ETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEK-IYVQD 531 (600)
T ss_pred CCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCC-CcHHH
Confidence 35689999999911 11 1224677776522 221100 01111 34444555555221111 11111
Q ss_pred cccHHHHHHHHHhccCCcEEEEEeCC----hHHHHHHHHHHhcCCCce
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTITDV----KDLHDWIVSHFTEHPLFV 124 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~~d~----~~~~~~~~~~~~~~~~f~ 124 (169)
. ..+--+++.+.|..|+.+|++-+. ++..+.+.+.+.+++.+.
T Consensus 532 ~-l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~ 578 (600)
T PRK10953 532 K-LREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMD 578 (600)
T ss_pred H-HHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCC
Confidence 0 122334677778999999998664 455566667777776543
No 359
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=37.62 E-value=70 Score=27.67 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=25.5
Q ss_pred CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHH
Q psy13086 17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYV 52 (169)
Q Consensus 17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a 52 (169)
++.+||-|..|.. +....| .+|++||+|+.-+...
T Consensus 35 ~~d~vl~ItSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDYLLAGP-KRIHAVDLNPAQNALL 73 (380)
T ss_pred CCCeEEEEccCCchHHHHHhcCC-ceEEEEeCCHHHHHHH
Confidence 4678999988777 434445 5999999999754443
No 360
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=37.60 E-value=1.8e+02 Score=23.54 Aligned_cols=73 Identities=8% Similarity=0.189 Sum_probs=42.8
Q ss_pred CeEEEEcCccc-------ccCc--CCCCcEEEEeCCHHHHHHHHHHhc-----------cccceEEEeCCCCcccccchh
Q psy13086 19 VEFVDVGCGKL-------YLPM--FPSTLILGLEIRVKVSDYVIDEWS-----------LYLKKMFFLYPDPHFKRCKYK 78 (169)
Q Consensus 19 ~~iLDiGCG~G-------la~~--~p~~~v~GiDis~~~l~~a~~~~~-----------~~~d~v~~~f~d~~f~~~h~~ 78 (169)
.+|.=||||.= +... .+..++++.|.+++-++.+.++.. ...|.|.+..++..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~------- 75 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDL------- 75 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHH-------
Confidence 35777899842 2222 134479999999887776554221 23456665555321
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
..++++++...++++ .++++
T Consensus 76 ----~~~vl~~l~~~~~~~-~lvIS 95 (272)
T PRK12491 76 ----YSSVINQIKDQIKND-VIVVT 95 (272)
T ss_pred ----HHHHHHHHHHhhcCC-cEEEE
Confidence 245677777777665 44444
No 361
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=36.46 E-value=2e+02 Score=23.17 Aligned_cols=81 Identities=7% Similarity=-0.030 Sum_probs=46.8
Q ss_pred CCCeEEEEcCc-cc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCC--------cccccchhhhcc
Q psy13086 17 KKVEFVDVGCG-KL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDP--------HFKRCKYKWRII 82 (169)
Q Consensus 17 ~~~~iLDiGCG-~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~--------~f~~~h~~~~~~ 82 (169)
++..||-+||| .| +++. -+.++++++.+...++.+++ .. .+.+. ..... .++.. ...+.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~-~g--~~~~~-~~~~~~~~~~~~~~~d~v--i~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARA-MGFETVAITRSPDKRELARK-LG--ADEVV-DSGAELDEQAAAGGADVI--LVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHH-hC--CcEEe-ccCCcchHHhccCCCCEE--EECCC
Confidence 45778888886 55 3333 35689999999988877743 21 11111 00000 01100 00001
Q ss_pred cHHHHHHHHHhccCCcEEEEEe
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
....+..+.+.|+++|+++...
T Consensus 235 ~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred cHHHHHHHHHhcccCCEEEEEC
Confidence 2467888999999999998764
No 362
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=35.93 E-value=20 Score=30.27 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.4
Q ss_pred HHHHHHHHhccCCcEEEEE
Q psy13086 85 NLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~i~ 103 (169)
.+|+.=++-|+|||++++.
T Consensus 164 ~FL~~Ra~ELv~GG~mvl~ 182 (334)
T PF03492_consen 164 SFLKARAEELVPGGRMVLT 182 (334)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhheeccCcEEEEE
Confidence 4666667789999999987
No 363
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=35.88 E-value=1.9e+02 Score=23.81 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=46.9
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCC----cccccc-hh--h----
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDP----HFKRCK-YK--W---- 79 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~----~f~~~h-~~--~---- 79 (169)
++.+||=+|||. | +|+.. +.+++++|.++.-++.|++ +. .+.+ +...++ ..+... .. +
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~-~G--a~~~-i~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG-FG--ADLT-LNPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-hC--CceE-ecCccccHHHHHHHHHhhcccCCCCC
Confidence 467899999843 2 44443 4589999999988887754 21 1221 111111 000000 00 0
Q ss_pred ---hc----ccHHHHHHHHHhccCCcEEEEE
Q psy13086 80 ---RI----INQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 80 ---~~----~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
.+ -....++...+.|++||++++.
T Consensus 241 ~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 241 TGWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred CcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 01 1256788888999999999875
No 364
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=34.15 E-value=2.3e+02 Score=22.12 Aligned_cols=83 Identities=10% Similarity=-0.084 Sum_probs=44.9
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCCc-EEEEeCCHHHHHHHHHHhccccceEEEeC----CCCcccccchhhhcccHH
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPSTL-ILGLEIRVKVSDYVIDEWSLYLKKMFFLY----PDPHFKRCKYKWRIINQN 85 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~~-v~GiDis~~~l~~a~~~~~~~~d~v~~~f----~d~~f~~~h~~~~~~~~~ 85 (169)
++.++|=.|||. | +|+.. +.. +++++.++...+.+++.- ..+.+...- ...-++.. ........
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~d~v--l~~~~~~~ 171 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALG--PADPVAADTADEIGGRGADVV--IEASGSPS 171 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcC--CCccccccchhhhcCCCCCEE--EEccCChH
Confidence 356777778754 3 44443 345 999999988777665431 011110000 00001100 00001245
Q ss_pred HHHHHHHhccCCcEEEEEe
Q psy13086 86 LLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 86 ~l~~~~rvLkpGG~l~i~~ 104 (169)
.+.+..+.|+++|+++...
T Consensus 172 ~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 172 ALETALRLLRDRGRVVLVG 190 (277)
T ss_pred HHHHHHHHhcCCcEEEEEe
Confidence 7888899999999998753
No 365
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=34.07 E-value=1.1e+02 Score=24.70 Aligned_cols=70 Identities=14% Similarity=0.008 Sum_probs=41.8
Q ss_pred EEEEcCcc-c--ccCcC--CCCcEEEEeCCHHHHHHHHHHh--c---------cccceEEEeCCCCcccccchhhhcccH
Q psy13086 21 FVDVGCGK-L--YLPMF--PSTLILGLEIRVKVSDYVIDEW--S---------LYLKKMFFLYPDPHFKRCKYKWRIINQ 84 (169)
Q Consensus 21 iLDiGCG~-G--la~~~--p~~~v~GiDis~~~l~~a~~~~--~---------~~~d~v~~~f~d~~f~~~h~~~~~~~~ 84 (169)
|.=||+|. | ++... .+.+|+++|.++..++.+.+.- . ...|.|.+..|... ..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-----------~~ 71 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-----------LL 71 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-----------HH
Confidence 55577774 3 44322 3468999999998888775431 0 23455544444221 24
Q ss_pred HHHHHHHHhccCCcEEE
Q psy13086 85 NLLSEYAYVLSEGGIVY 101 (169)
Q Consensus 85 ~~l~~~~rvLkpGG~l~ 101 (169)
++++++...++++-.+.
T Consensus 72 ~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 72 PPSEQLIPALPPEAIVT 88 (279)
T ss_pred HHHHHHHHhCCCCcEEE
Confidence 57788888888875443
No 366
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=33.92 E-value=1e+02 Score=21.44 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=25.5
Q ss_pred cHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
...+++++...|+||...+|.--.+...+...+.+..++
T Consensus 41 ~d~~~~ev~~~L~~GssAl~~lv~~~~~d~v~~~l~~~g 79 (102)
T PF06897_consen 41 DDEFIKEVGEALKPGSSALFLLVDEATEDKVDAALRKFG 79 (102)
T ss_pred CHHHHHHHHhhcCCCceEEEEEeccCCHHHHHHHHHhcC
Confidence 467999999999999877665333333333445555444
No 367
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=33.68 E-value=2.2e+02 Score=23.05 Aligned_cols=81 Identities=7% Similarity=0.080 Sum_probs=45.3
Q ss_pred CeEEEEcCccc-------ccCcCCCC-cEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc-cch----hhhc----
Q psy13086 19 VEFVDVGCGKL-------YLPMFPST-LILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR-CKY----KWRI---- 81 (169)
Q Consensus 19 ~~iLDiGCG~G-------la~~~p~~-~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~-~h~----~~~~---- 81 (169)
.+||=.|++.| +|+.. ++ ++++++-++.-.+.+++.+. .+.+ +.+.++.+.. ... .-++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lG--a~~v-i~~~~~~~~~~i~~~~~~gvd~vid~ 231 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELG--FDAA-INYKTDNVAERLRELCPEGVDVYFDN 231 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcC--CcEE-EECCCCCHHHHHHHHCCCCceEEEEC
Confidence 67888887555 44443 55 79999999887777665432 2222 1111111100 000 0000
Q ss_pred ccHHHHHHHHHhccCCcEEEEE
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
+....+.+..+.|+++|+++..
T Consensus 232 ~g~~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 232 VGGEISDTVISQMNENSHIILC 253 (345)
T ss_pred CCcHHHHHHHHHhccCCEEEEE
Confidence 1123568888999999999864
No 368
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=33.32 E-value=2.5e+02 Score=22.57 Aligned_cols=82 Identities=10% Similarity=-0.065 Sum_probs=45.1
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCCc-EEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc-----chhhhc---
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPSTL-ILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC-----KYKWRI--- 81 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~~-v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~-----h~~~~~--- 81 (169)
++.+||-+|+|. | +|+.. +.+ ++.++-+++..+.+++. . .+.+ +...++.+... ....-+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g--~~~~-~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL-G--ATET-VDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-C--CeEE-ecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 467888888642 3 44443 345 89999998887777432 1 1111 11111110000 000000
Q ss_pred c-cHHHHHHHHHhccCCcEEEEE
Q psy13086 82 I-NQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 82 ~-~~~~l~~~~rvLkpGG~l~i~ 103 (169)
+ ....+.+..+.|+++|+++..
T Consensus 234 ~~~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 234 TGVPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCChHHHHHHHHHHhcCCEEEEE
Confidence 1 246888899999999999765
No 369
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=33.12 E-value=1.4e+02 Score=25.70 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=46.7
Q ss_pred EEEEcCccc---ccCcC--CCCcEEEEeCCHHHHHHHHH---------------------Hhc---------cccceEEE
Q psy13086 21 FVDVGCGKL---YLPMF--PSTLILGLEIRVKVSDYVID---------------------EWS---------LYLKKMFF 65 (169)
Q Consensus 21 iLDiGCG~G---la~~~--p~~~v~GiDis~~~l~~a~~---------------------~~~---------~~~d~v~~ 65 (169)
|-=||+|.= +|... .+.+|+|+|.++.-++..++ ++. ...|.+.+
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii 82 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIII 82 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEE
Confidence 455788854 43332 45689999999876654331 111 34566666
Q ss_pred eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..|+|.-......-+ .....++.+...|++|-.++..+
T Consensus 83 ~vpt~~~~~~~~d~~-~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 83 CVPTPLKEDGSPDLS-YVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred EeCCCCCCCCCcChH-HHHHHHHHHHHhcCCCCEEEEeC
Confidence 666653210000000 02456677888899887776654
No 370
>KOG1158|consensus
Probab=32.90 E-value=3.1e+02 Score=25.60 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=27.3
Q ss_pred HHHHHHHHHhc-cCCcEEEEEeCCh----HHHHHHHHHHhcCC
Q psy13086 84 QNLLSEYAYVL-SEGGIVYTITDVK----DLHDWIVSHFTEHP 121 (169)
Q Consensus 84 ~~~l~~~~rvL-kpGG~l~i~~d~~----~~~~~~~~~~~~~~ 121 (169)
.+..+++.++| +.||.+|++-|.. +...-+...+.+..
T Consensus 578 ~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g 620 (645)
T KOG1158|consen 578 REYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDG 620 (645)
T ss_pred HHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhC
Confidence 56788899999 5599999997654 45555555555544
No 371
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.56 E-value=1.2e+02 Score=25.13 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=26.0
Q ss_pred EEEEcCccc---ccCcCCCCc-EEEEeCCHHHHHHHHHHhc
Q psy13086 21 FVDVGCGKL---YLPMFPSTL-ILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 21 iLDiGCG~G---la~~~p~~~-v~GiDis~~~l~~a~~~~~ 57 (169)
|+|+=||-| ++-...+.+ +.++|+++.+++.-+.|.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 589999999 333333444 5679999998887776653
No 372
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=31.27 E-value=2.7e+02 Score=22.20 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=46.9
Q ss_pred CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcc-ccc--------chhhh
Q psy13086 17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHF-KRC--------KYKWR 80 (169)
Q Consensus 17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f-~~~--------h~~~~ 80 (169)
++.+||=.|.+.| +|+. -++++++++-++.-.+.+++ +. .+.+. .+.++.+ +.. ...-.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~-~G~~vi~~~~s~~~~~~l~~-~G--a~~vi-~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKI-KGCKVIGCAGSDDKVAWLKE-LG--FDAVF-NYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH-cC--CCEEE-eCCCccHHHHHHHHCCCCcEEEEE
Confidence 4677888886555 4444 35689999988877777755 21 23221 1221111 000 00000
Q ss_pred cccHHHHHHHHHhccCCcEEEEE
Q psy13086 81 IINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 81 ~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
.+....+....+.|+++|+++..
T Consensus 218 ~~g~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 218 NVGGEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCCHHHHHHHHHhhccCCEEEEE
Confidence 11246788899999999999764
No 373
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=30.98 E-value=2.4e+02 Score=22.99 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=44.2
Q ss_pred CeEEEEcCccc---ccCcC----CCCcEEEEeCCHHHHHHHHHHh-----c-------cccceEEEeCCCCcccccchhh
Q psy13086 19 VEFVDVGCGKL---YLPMF----PSTLILGLEIRVKVSDYVIDEW-----S-------LYLKKMFFLYPDPHFKRCKYKW 79 (169)
Q Consensus 19 ~~iLDiGCG~G---la~~~----p~~~v~GiDis~~~l~~a~~~~-----~-------~~~d~v~~~f~d~~f~~~h~~~ 79 (169)
.+|.=||+|.= ++... ....|+++|.++..++.+++.- . ...|.|.+.-|...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-------- 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-------- 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH--------
Confidence 56888898873 33221 1247999999998777665420 0 23344443333221
Q ss_pred hcccHHHHHHHHHhccCCcEEEEE
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
...+++++...+++|..++..
T Consensus 79 ---~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 79 ---SGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred ---HHHHHHHHHhhCCCCCEEEeC
Confidence 145677787888998866544
No 374
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.94 E-value=2.6e+02 Score=22.53 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=25.4
Q ss_pred CCeEEEEcCccc---ccCc--CCCCcEEEEeCCHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL---YLPM--FPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~--~p~~~v~GiDis~~~l~~a~~ 54 (169)
-.+|.=||+|+= +|.. ..+..|+..|.+++.++.+.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 45 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLA 45 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 356777899854 3332 235689999999988876543
No 375
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.92 E-value=2.4e+02 Score=22.73 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=24.2
Q ss_pred eEEEEcCcc-c--ccCcC--CCCcEEEEeCCHHHHHHHHH
Q psy13086 20 EFVDVGCGK-L--YLPMF--PSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 20 ~iLDiGCG~-G--la~~~--p~~~v~GiDis~~~l~~a~~ 54 (169)
+|.=||+|. | +|... .+.+|+.+|.+++.++.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 466678874 2 44322 35689999999998887654
No 376
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=30.92 E-value=2.4e+02 Score=24.71 Aligned_cols=73 Identities=15% Similarity=0.049 Sum_probs=45.1
Q ss_pred CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHh------c---cccceEEEeCCCCcccccchhhhc
Q psy13086 17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEW------S---LYLKKMFFLYPDPHFKRCKYKWRI 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~------~---~~~d~v~~~f~d~~f~~~h~~~~~ 81 (169)
.+.+|+=+|||.= .++. -+++|+.+|+++.-.+.|++-- . ...|.+.- ..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~-at------------- 265 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVT-TT------------- 265 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEE-CC-------------
Confidence 4678999999973 3333 3568999999987666665310 0 22333221 10
Q ss_pred ccHHHHHH-HHHhccCCcEEEEEe
Q psy13086 82 INQNLLSE-YAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 ~~~~~l~~-~~rvLkpGG~l~i~~ 104 (169)
-.+..+.. ..+.+|+||+++...
T Consensus 266 G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 01345554 489999999998764
No 377
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=30.89 E-value=2.1e+02 Score=23.82 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.9
Q ss_pred HHHHHHHHHhccCCcEEEEE
Q psy13086 84 QNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~ 103 (169)
...+++..+.|++||+++..
T Consensus 258 ~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 258 VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred HHHHHHHHHHhcCCcEEEEe
Confidence 35788889999999999875
No 378
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=30.10 E-value=1e+02 Score=23.61 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=44.8
Q ss_pred CCCeEEEEcCccc---cc--CcCCCCcEE-EEeCCHHHHHHHHHH-h--------ccccceEEEeCCCCcccccchhhhc
Q psy13086 17 KKVEFVDVGCGKL---YL--PMFPSTLIL-GLEIRVKVSDYVIDE-W--------SLYLKKMFFLYPDPHFKRCKYKWRI 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G---la--~~~p~~~v~-GiDis~~~l~~a~~~-~--------~~~~d~v~~~f~d~~f~~~h~~~~~ 81 (169)
++.+|.=||+|.= .| .+-.+.+|+ |.--.....+.|++. + ....|.|.+..||..
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~---------- 72 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEV---------- 72 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHH----------
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHH----------
Confidence 3678889999864 22 233566666 555555577777653 1 156777777777642
Q ss_pred ccHHHH-HHHHHhccCCcEEEEE
Q psy13086 82 INQNLL-SEYAYVLSEGGIVYTI 103 (169)
Q Consensus 82 ~~~~~l-~~~~rvLkpGG~l~i~ 103 (169)
+.++. +++...||||-.|.|+
T Consensus 73 -q~~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 73 -QPEVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp -HHHHHHHHHHHHS-TT-EEEES
T ss_pred -HHHHHHHHHHhhCCCCCEEEeC
Confidence 34555 8899999999999985
No 379
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.65 E-value=43 Score=24.35 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCCeEEEEcCccc--ccCcC--CCCcEEEEeCCHH
Q psy13086 17 KKVEFVDVGCGKL--YLPMF--PSTLILGLEIRVK 47 (169)
Q Consensus 17 ~~~~iLDiGCG~G--la~~~--p~~~v~GiDis~~ 47 (169)
...+|+|||-|-= .|.+. .+..++++||.+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~ 47 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK 47 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc
Confidence 3679999999887 33322 2479999999987
No 380
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.49 E-value=3.1e+02 Score=22.34 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=44.7
Q ss_pred CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccc-ccc-----hhhhcc--
Q psy13086 17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFK-RCK-----YKWRII-- 82 (169)
Q Consensus 17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~-~~h-----~~~~~~-- 82 (169)
++.+||=.|+|. | +|+...-..++++|.+++-.+.+++ +. ++.+ +.+.++.+. ..+ ..-+++
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g--~~~~-v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE-YG--ATDI-VDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cC--CceE-ecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 456777778652 1 4444433369999999877766654 11 1221 111111110 000 000011
Q ss_pred ---cHHHHHHHHHhccCCcEEEEE
Q psy13086 83 ---NQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 83 ---~~~~l~~~~rvLkpGG~l~i~ 103 (169)
....+.+..+.|+++|+++..
T Consensus 242 ~~g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 242 AGGGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEe
Confidence 146889999999999998764
No 381
>KOG2912|consensus
Probab=29.42 E-value=26 Score=30.04 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=28.7
Q ss_pred EEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 21 FVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 21 iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
=+|||.|+- +..+.-+..++|+|+...-+..|+.++.
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~ 147 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVE 147 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccc
Confidence 489999888 3334445899999999999999887654
No 382
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=28.93 E-value=32 Score=28.72 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=19.8
Q ss_pred eEEEEcCccc---------ccCcCCCCcEEEEeCCH
Q psy13086 20 EFVDVGCGKL---------YLPMFPSTLILGLEIRV 46 (169)
Q Consensus 20 ~iLDiGCG~G---------la~~~p~~~v~GiDis~ 46 (169)
..+=++|||| +....|+.+|+||++..
T Consensus 186 d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 186 DSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 3566777777 33346889999999965
No 383
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=28.69 E-value=1.9e+02 Score=19.51 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=23.9
Q ss_pred eEEEEcCccc-------ccCcCCCCcEEE-EeCCHHHHHHHHHH
Q psy13086 20 EFVDVGCGKL-------YLPMFPSTLILG-LEIRVKVSDYVIDE 55 (169)
Q Consensus 20 ~iLDiGCG~G-------la~~~p~~~v~G-iDis~~~l~~a~~~ 55 (169)
+|.=||+|.- +....++.+++| +|.++...+.+.++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~ 45 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK 45 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH
Confidence 4666899776 333346677764 79998877766544
No 384
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.13 E-value=2.2e+02 Score=22.89 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=23.0
Q ss_pred eEEEEcCcc-c--ccCc--CCCCcEEEEeCCHHHHHHHHH
Q psy13086 20 EFVDVGCGK-L--YLPM--FPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 20 ~iLDiGCG~-G--la~~--~p~~~v~GiDis~~~l~~a~~ 54 (169)
+|-=||+|. | ++.. ..+.+|+++|++++.++.+++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~ 44 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLA 44 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Confidence 466678874 2 2222 224689999999998876543
No 385
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=27.95 E-value=1.9e+02 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=28.1
Q ss_pred CeEEEEcCccc---ccCc--CCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 19 VEFVDVGCGKL---YLPM--FPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 19 ~~iLDiGCG~G---la~~--~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
.+|-=||+|+= +|.. ..+..|+-+|++++.++.+++++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~ 356 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEA 356 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 46888899863 4332 34789999999999988876543
No 386
>KOG0022|consensus
Probab=27.76 E-value=96 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCCCeEEEEcCccc-c-----cCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 16 EKKVEFVDVGCGKL-Y-----LPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-l-----a~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
+++.++.=+|+|.= | ++.....+++|||++++-.+.|++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 34566777777653 2 233344699999999998888864
No 387
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=27.60 E-value=3.3e+02 Score=22.02 Aligned_cols=81 Identities=7% Similarity=0.020 Sum_probs=43.8
Q ss_pred CCeEEEEcCccc-------ccCcCCCCc-EEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccccc-h----hhhc---
Q psy13086 18 KVEFVDVGCGKL-------YLPMFPSTL-ILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCK-Y----KWRI--- 81 (169)
Q Consensus 18 ~~~iLDiGCG~G-------la~~~p~~~-v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~h-~----~~~~--- 81 (169)
+.+||=+|+| + +++.. +++ ++++|.++.-.+.+++ +. .+.+ +.+.+...+... . .-++
T Consensus 164 g~~vlV~G~G-~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~-~g--a~~~-i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 164 RDTVLVVGAG-PVGLGALMLARAL-GAEDVIGVDPSPERLELAKA-LG--ADFV-INSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH-hC--CCEE-EcCCcchHHHHHHHhCCCCCCEEEE
Confidence 5677777874 4 34443 456 9999999887777643 21 1221 111111000000 0 0001
Q ss_pred --ccHHHHHHHHHhccCCcEEEEEe
Q psy13086 82 --INQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 82 --~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
-....+....+.|+++|++++..
T Consensus 238 ~~g~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 238 CSGNTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 12456778889999999998753
No 388
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=27.05 E-value=1.7e+02 Score=27.57 Aligned_cols=38 Identities=8% Similarity=-0.135 Sum_probs=28.3
Q ss_pred CeEEEEcCcc-c--ccC--cCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086 19 VEFVDVGCGK-L--YLP--MFPSTLILGLEIRVKVSDYVIDEW 56 (169)
Q Consensus 19 ~~iLDiGCG~-G--la~--~~p~~~v~GiDis~~~l~~a~~~~ 56 (169)
.+|-=||+|+ | +|. ...+..|+-+|++++.++.+.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i 378 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQV 378 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHH
Confidence 5688899986 2 333 235789999999999988876544
No 389
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.89 E-value=3.1e+02 Score=23.42 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCccc-----ccCcCCCCc-EEEEeCCHHHHHHHHHH-h--------ccccceEEEeCCCCcccccchhhh
Q psy13086 16 EKKVEFVDVGCGKL-----YLPMFPSTL-ILGLEIRVKVSDYVIDE-W--------SLYLKKMFFLYPDPHFKRCKYKWR 80 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-----la~~~p~~~-v~GiDis~~~l~~a~~~-~--------~~~~d~v~~~f~d~~f~~~h~~~~ 80 (169)
.++.+|.=||||+= +-.+-++.+ ++|+--.....+.|++. + ....|.|.+.-||..
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~--------- 86 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQ--------- 86 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhh---------
Confidence 35678999999986 223334444 56776666667777653 1 156777777777752
Q ss_pred cccHHHHH-HHHHhccCCcEEEEE
Q psy13086 81 IINQNLLS-EYAYVLSEGGIVYTI 103 (169)
Q Consensus 81 ~~~~~~l~-~~~rvLkpGG~l~i~ 103 (169)
++++.+ ++.-.|+.|-.|.|+
T Consensus 87 --q~~vy~~~I~p~Lk~G~aL~Fa 108 (338)
T COG0059 87 --QKEVYEKEIAPNLKEGAALGFA 108 (338)
T ss_pred --HHHHHHHHhhhhhcCCceEEec
Confidence 355666 899999999999985
No 390
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=26.70 E-value=66 Score=24.65 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=14.5
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q psy13086 84 QNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~ 104 (169)
..+++-+++.|.|||++++.-
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY 86 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEY 86 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-
T ss_pred HHHHHHHHHHhhhcCeEEEEE
Confidence 579999999999999999873
No 391
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=26.56 E-value=2.1e+02 Score=24.46 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=49.2
Q ss_pred CCCCeEEEEcCcc-c--ccCcC--CCCcEEEEeCCHHHHHHHHH-H-----h---ccccceEEEeCCCCcccccchhhhc
Q psy13086 16 EKKVEFVDVGCGK-L--YLPMF--PSTLILGLEIRVKVSDYVID-E-----W---SLYLKKMFFLYPDPHFKRCKYKWRI 81 (169)
Q Consensus 16 ~~~~~iLDiGCG~-G--la~~~--p~~~v~GiDis~~~l~~a~~-~-----~---~~~~d~v~~~f~d~~f~~~h~~~~~ 81 (169)
.++.+|.=||+|. | +|... .+.+|++.|-+....+.|.. . + ....|.|.+..|++.-
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t--------- 84 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQ--------- 84 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHH---------
Confidence 3467888899985 4 44332 35688777655444444432 1 1 1567888888887421
Q ss_pred ccHHHH-HHHHHhccCCcEEEEE
Q psy13086 82 INQNLL-SEYAYVLSEGGIVYTI 103 (169)
Q Consensus 82 ~~~~~l-~~~~rvLkpGG~l~i~ 103 (169)
..++ +++...||||..|.|+
T Consensus 85 --~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 85 --AHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred --HHHHHHHHHhcCCCCCEEEEC
Confidence 1233 5688999999999885
No 392
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=26.46 E-value=3.8e+02 Score=22.30 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc-cc---------hh
Q psy13086 16 EKKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR-CK---------YK 78 (169)
Q Consensus 16 ~~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~-~h---------~~ 78 (169)
.++.+||=.|...| ||+..-. .++++--|.+-.+.+++.- .|.+ +.|.++.+.. .. ..
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lG---Ad~v-i~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELG---ADHV-INYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcC---CCEE-EcCCcccHHHHHHHHcCCCCceEE
Confidence 34688999998888 6666533 7777777776555554421 1111 1122221110 00 00
Q ss_pred hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086 79 WRIINQNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 79 ~~~~~~~~l~~~~rvLkpGG~l~i~~ 104 (169)
-..+-.+.+.+..+.|+++|+++...
T Consensus 216 ~D~vG~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 216 LDTVGGDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred EECCCHHHHHHHHHHhccCCEEEEEe
Confidence 01123678888999999999998864
No 393
>KOG0023|consensus
Probab=26.44 E-value=1.1e+02 Score=26.24 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.3
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q psy13086 84 QNLLSEYAYVLSEGGIVYTIT 104 (169)
Q Consensus 84 ~~~l~~~~rvLkpGG~l~i~~ 104 (169)
...+..+.+.||++|++++..
T Consensus 259 ~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 259 EHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ccchHHHHHHhhcCCEEEEEe
Confidence 446778889999999999863
No 394
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=26.40 E-value=95 Score=23.22 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=30.7
Q ss_pred cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086 58 LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH 120 (169)
Q Consensus 58 ~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~ 120 (169)
..+|.+.+++| +.+.. ..-.|..+...|++||.++++-++..=......++...
T Consensus 68 ~~~D~vvly~P----KaK~e-----~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~ 121 (155)
T PF08468_consen 68 QDFDTVVLYWP----KAKAE-----AQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPY 121 (155)
T ss_dssp TT-SEEEEE------SSHHH-----HHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTT
T ss_pred cCCCEEEEEcc----CcHHH-----HHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhh
Confidence 45777766654 22211 24589999999999999999976554333344444443
No 395
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.28 E-value=3.4e+02 Score=22.77 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=27.0
Q ss_pred CCeEEEEcCcc-c--ccCc--CCCCcEEEEeCCHHHHHHHHHH
Q psy13086 18 KVEFVDVGCGK-L--YLPM--FPSTLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 18 ~~~iLDiGCG~-G--la~~--~p~~~v~GiDis~~~l~~a~~~ 55 (169)
-.+|-=||+|+ | +|.. ..+..|+..|++++.++.++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~ 49 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRAN 49 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence 35688889984 3 4432 3578999999999887766543
No 396
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=26.11 E-value=3.6e+02 Score=21.90 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCC-Ccccc-cc--------hhh
Q psy13086 17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPD-PHFKR-CK--------YKW 79 (169)
Q Consensus 17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d-~~f~~-~h--------~~~ 79 (169)
++.+||=.|+..| +|+. .++++++++-++.-.+.+++++. .+.+ +.+.+ +.+.. .+ ..-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~-~G~~Vi~~~~~~~~~~~~~~~lG--a~~v-i~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKL-KGCYVVGSAGSDEKVDLLKNKLG--FDDA-FNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcC--Ccee-EEcCCcccHHHHHHHhCCCCcEEEE
Confidence 4678888887555 4444 35689999988877777765332 2222 12211 11110 00 000
Q ss_pred hcccHHHHHHHHHhccCCcEEEEE
Q psy13086 80 RIINQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 80 ~~~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
..+....+.+..+.|+++|+++..
T Consensus 227 d~~g~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 227 DNVGGKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred ECCCHHHHHHHHHHhccCcEEEEe
Confidence 001245788889999999999864
No 397
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=25.92 E-value=4.4e+02 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCeEEEEcCccc--ccC---c--CC--CCcEEEEeCCHHHHHHHHHH
Q psy13086 18 KVEFVDVGCGKL--YLP---M--FP--STLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 18 ~~~iLDiGCG~G--la~---~--~p--~~~v~GiDis~~~l~~a~~~ 55 (169)
...+.|.-||+| +.. . +. ...++|-+...+|...|+.+
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mn 264 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMN 264 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHH
Confidence 457999999999 221 1 11 24799999999999888765
No 398
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=25.75 E-value=1.9e+02 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=26.4
Q ss_pred CeEEEEcCcc-c--ccCc--CCCCcEEEEeCCHHHHHHHHHH
Q psy13086 19 VEFVDVGCGK-L--YLPM--FPSTLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 19 ~~iLDiGCG~-G--la~~--~p~~~v~GiDis~~~l~~a~~~ 55 (169)
.+|-=||+|+ | +|.. ..+..|+..|.+++.++.+.++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~ 49 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDG 49 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence 4577778874 4 4443 3467999999999988886543
No 399
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.72 E-value=3.3e+02 Score=21.99 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=25.8
Q ss_pred CeEEEEcCccc---ccCc--CCCCcEEEEeCCHHHHHHHHHH
Q psy13086 19 VEFVDVGCGKL---YLPM--FPSTLILGLEIRVKVSDYVIDE 55 (169)
Q Consensus 19 ~~iLDiGCG~G---la~~--~p~~~v~GiDis~~~l~~a~~~ 55 (169)
.+|.=||+|+= +|.. ..+..|+.+|++++.++.++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 45777899854 3332 2356899999999888777654
No 400
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=25.66 E-value=2e+02 Score=18.81 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=24.2
Q ss_pred HHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086 86 LLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH 120 (169)
Q Consensus 86 ~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~ 120 (169)
-+++..+-|++|+.+.+.+|.+.........+..+
T Consensus 25 ~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~ 59 (81)
T PRK00299 25 MVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFM 59 (81)
T ss_pred HHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHc
Confidence 35566677899999999888776665555544443
No 401
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=25.52 E-value=36 Score=25.66 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=16.7
Q ss_pred EEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086 23 DVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 23 DiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~ 54 (169)
=++|||| .|-..|+.. .++=.++.....+++
T Consensus 63 IliCGTGiG~~iaANKv~Gir-aAl~~D~~sA~~ar~ 98 (151)
T COG0698 63 ILICGTGIGMSIAANKVPGIR-AALVSDPTSAKLARE 98 (151)
T ss_pred EEEecCChhHHHHhhccCCeE-EEEecCHHHHHHHHh
Confidence 3678888 344566632 233334455555655
No 402
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=25.23 E-value=1.8e+02 Score=18.22 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=24.6
Q ss_pred HHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 87 LSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 87 l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
+++..+-|++|+.+.+.+|.+.........+..++
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G 50 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTG 50 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcC
Confidence 45556778899999998887776665555555444
No 403
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=24.27 E-value=2e+02 Score=23.51 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=44.4
Q ss_pred EEEEcCccc---ccCcC--CCCcEEEEeCCHHHHHHHHHHhc-------------cccceEEEeCCCCcccccchhhhcc
Q psy13086 21 FVDVGCGKL---YLPMF--PSTLILGLEIRVKVSDYVIDEWS-------------LYLKKMFFLYPDPHFKRCKYKWRII 82 (169)
Q Consensus 21 iLDiGCG~G---la~~~--p~~~v~GiDis~~~l~~a~~~~~-------------~~~d~v~~~f~d~~f~~~h~~~~~~ 82 (169)
|-=||+|.= ++... .+.+|++.|.++..++.+.+.-. ...|.|.+..|+..
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~----------- 71 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGI----------- 71 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchH-----------
Confidence 555788764 44432 45689999999987766654210 12355655555431
Q ss_pred cHHHHHHHHHhccCCcEEEEE
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~ 103 (169)
...+++++...|++|-.++-.
T Consensus 72 ~~~v~~~l~~~l~~g~ivid~ 92 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDIVIDG 92 (298)
T ss_pred HHHHHHHHHhhCCCCCEEEEC
Confidence 246778888889888655443
No 404
>KOG1227|consensus
Probab=24.12 E-value=2e+02 Score=24.56 Aligned_cols=39 Identities=10% Similarity=-0.022 Sum_probs=29.4
Q ss_pred CeEEEEcCccc---c-cCcC-CCCcEEEEeCCHHHHHHHHHHhc
Q psy13086 19 VEFVDVGCGKL---Y-LPMF-PSTLILGLEIRVKVSDYVIDEWS 57 (169)
Q Consensus 19 ~~iLDiGCG~G---l-a~~~-p~~~v~GiDis~~~l~~a~~~~~ 57 (169)
..|+|+=.|-| + .... ...+|+++|.++..++..++++.
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHH
Confidence 67999999999 3 1111 23589999999999988776554
No 405
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.94 E-value=3.9e+02 Score=21.68 Aligned_cols=36 Identities=6% Similarity=0.126 Sum_probs=25.2
Q ss_pred CeEEEEcCccc---ccCc--CCCCcEEEEeCCHHHHHHHHH
Q psy13086 19 VEFVDVGCGKL---YLPM--FPSTLILGLEIRVKVSDYVID 54 (169)
Q Consensus 19 ~~iLDiGCG~G---la~~--~p~~~v~GiDis~~~l~~a~~ 54 (169)
.+|.=||+|.= ++.. ..+..|+++|.+++.++.+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 45777899864 3332 245689999999988776654
No 406
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=23.91 E-value=3.5e+02 Score=21.82 Aligned_cols=76 Identities=5% Similarity=0.018 Sum_probs=44.4
Q ss_pred CCcEEEEeCCHHHHHHHHHH-hc---------cccceEEEeCCCCcccccchhhhcccHHHH---HHHHHhccCCcEEEE
Q psy13086 36 STLILGLEIRVKVSDYVIDE-WS---------LYLKKMFFLYPDPHFKRCKYKWRIINQNLL---SEYAYVLSEGGIVYT 102 (169)
Q Consensus 36 ~~~v~GiDis~~~l~~a~~~-~~---------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l---~~~~rvLkpGG~l~i 102 (169)
+.+|++.|.++..++.+.+. +. ...|.|.+..|++.. ...++ +.+...+++|-.++-
T Consensus 19 G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~----------~~~v~~g~~~l~~~~~~g~~vid 88 (288)
T TIGR01692 19 GHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQH----------VISVYSGDEGILPKVAKGSLLID 88 (288)
T ss_pred CCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH----------HHHHHcCcchHhhcCCCCCEEEE
Confidence 45899999998876655432 11 456777777766421 12344 456667777765554
Q ss_pred Ee-CChHHHHHHHHHHhcCC
Q psy13086 103 IT-DVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 103 ~~-d~~~~~~~~~~~~~~~~ 121 (169)
.+ -.+.....+.+.+.+++
T Consensus 89 ~st~~p~~~~~~~~~~~~~g 108 (288)
T TIGR01692 89 CSTIDPDSARKLAELAAAHG 108 (288)
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 43 34445555666666554
No 407
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=23.89 E-value=65 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=17.8
Q ss_pred CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHH
Q psy13086 19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSD 50 (169)
Q Consensus 19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~ 50 (169)
++|||.=||-| +|. -+++|+|+|-|+-+..
T Consensus 77 ~~VLDaTaGLG~Da~vlA~--~G~~V~~lErspvia~ 111 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS--LGCKVTGLERSPVIAA 111 (234)
T ss_dssp --EEETT-TTSHHHHHHHH--HT--EEEEE--HHHHH
T ss_pred CEEEECCCcchHHHHHHHc--cCCeEEEEECCHHHHH
Confidence 58999999999 443 2679999999986443
No 408
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=23.09 E-value=1.6e+02 Score=19.95 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCccc------ccC---cC--CCCcEEEEeCCHHHHH
Q psy13086 16 EKKVEFVDVGCGKL------YLP---MF--PSTLILGLEIRVKVSD 50 (169)
Q Consensus 16 ~~~~~iLDiGCG~G------la~---~~--p~~~v~GiDis~~~l~ 50 (169)
.+.-.||=+|||.. ++. .. +..+++-.|.++..+.
T Consensus 22 ~~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlA 67 (100)
T PF14737_consen 22 DEDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLA 67 (100)
T ss_pred CCCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHH
Confidence 34678999999999 222 22 2478999999987665
No 409
>PRK06214 sulfite reductase; Provisional
Probab=22.76 E-value=5.8e+02 Score=23.14 Aligned_cols=123 Identities=14% Similarity=0.045 Sum_probs=59.8
Q ss_pred CeEEEEcCccc-------ccC----cC--CCCcEEEEeCCHHHHHHHH--HHhc--cccceEEEeCCCCcccccchhhhc
Q psy13086 19 VEFVDVGCGKL-------YLP----MF--PSTLILGLEIRVKVSDYVI--DEWS--LYLKKMFFLYPDPHFKRCKYKWRI 81 (169)
Q Consensus 19 ~~iLDiGCG~G-------la~----~~--p~~~v~GiDis~~~l~~a~--~~~~--~~~d~v~~~f~d~~f~~~h~~~~~ 81 (169)
..+|=||.||| +.. .. +..-++|.--+..-.-+.. +.+. +....++..|+.+.-.. .+....
T Consensus 384 ~PiImIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~~~k-~YVQ~~ 462 (530)
T PRK06214 384 TPIIMVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGEEK-TYVQDR 462 (530)
T ss_pred CCEEEEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCCCCC-CchhhH
Confidence 46899999999 111 11 2346778744432211111 1111 23333444454332111 111110
Q ss_pred ccHHHHHHHHHhccCCcEEEEEeCCh----HHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCC
Q psy13086 82 INQNLLSEYAYVLSEGGIVYTITDVK----DLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGE 157 (169)
Q Consensus 82 ~~~~~l~~~~rvLkpGG~l~i~~d~~----~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~ 157 (169)
..+...++.+.+..++.+|++-+.. +....+.+.+.++..+... -...|-+..+++||-
T Consensus 463 -L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~----------------~A~~~l~~l~~~gRY 525 (530)
T PRK06214 463 -MRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPD----------------EAVAFVAELKKAGRY 525 (530)
T ss_pred -HHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHH----------------HHHHHHHHHHHCCCE
Confidence 1123355666788899999986643 3444455555655443221 133455666777765
Q ss_pred eE
Q psy13086 158 KF 159 (169)
Q Consensus 158 i~ 159 (169)
.-
T Consensus 526 ~~ 527 (530)
T PRK06214 526 QA 527 (530)
T ss_pred EE
Confidence 54
No 410
>PRK08655 prephenate dehydrogenase; Provisional
Probab=22.40 E-value=5.2e+02 Score=22.58 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=47.1
Q ss_pred eEEEEc-Cc-cc--ccCcC--CCCcEEEEeCCHHHH-HHHHHH-hc---------cccceEEEeCCCCcccccchhhhcc
Q psy13086 20 EFVDVG-CG-KL--YLPMF--PSTLILGLEIRVKVS-DYVIDE-WS---------LYLKKMFFLYPDPHFKRCKYKWRII 82 (169)
Q Consensus 20 ~iLDiG-CG-~G--la~~~--p~~~v~GiDis~~~l-~~a~~~-~~---------~~~d~v~~~f~d~~f~~~h~~~~~~ 82 (169)
+|.=|| +| -| ++... .+..|+++|.++... +.|.+. +. ...|.|.+..|...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~----------- 70 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINV----------- 70 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHH-----------
Confidence 355676 55 33 44332 345899999987764 333321 10 34465555444321
Q ss_pred cHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHH
Q psy13086 83 NQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSH 116 (169)
Q Consensus 83 ~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~ 116 (169)
...+++++...+++|..++-.+-. ......+.+.
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~ 105 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEY 105 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHh
Confidence 246788888888888866544433 3334444444
No 411
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=21.95 E-value=4.2e+02 Score=21.27 Aligned_cols=82 Identities=7% Similarity=0.017 Sum_probs=46.7
Q ss_pred CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCC-ccccc-c-hh-h--hc--
Q psy13086 17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDP-HFKRC-K-YK-W--RI-- 81 (169)
Q Consensus 17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~-~f~~~-h-~~-~--~~-- 81 (169)
++.+||=.|.+.| +|+. .++++++++-++.-.+.+++ +. .|.+. .+.++ .+... . .. + ++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~-~G~~Vi~~~~s~~~~~~~~~-lG--a~~vi-~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKL-KGCKVVGAAGSDEKVAYLKK-LG--FDVAF-NYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH-cC--CCEEE-eccccccHHHHHHHhCCCCeEEEE
Confidence 4678888886555 4444 35689999999877777754 21 23221 12211 11100 0 00 0 01
Q ss_pred --ccHHHHHHHHHhccCCcEEEEE
Q psy13086 82 --INQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 82 --~~~~~l~~~~rvLkpGG~l~i~ 103 (169)
+....+....+.|++||+++..
T Consensus 213 d~~G~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 213 DNVGGEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred ECCCHHHHHHHHHHhCcCcEEEEe
Confidence 1234678889999999999875
No 412
>PLN02356 phosphateglycerate kinase
Probab=21.62 E-value=85 Score=27.60 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=22.1
Q ss_pred CeEEEEcCccc---------ccCcCCCCcEEEEeCCH
Q psy13086 19 VEFVDVGCGKL---------YLPMFPSTLILGLEIRV 46 (169)
Q Consensus 19 ~~iLDiGCG~G---------la~~~p~~~v~GiDis~ 46 (169)
...+=+++|+| +...+|+.+|+|||...
T Consensus 251 ~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~ 287 (423)
T PLN02356 251 LDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPG 287 (423)
T ss_pred CCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 45677899999 44567999999999753
No 413
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=20.93 E-value=4.5e+02 Score=21.23 Aligned_cols=53 Identities=9% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCeEEEEcCc-cc---cc---CcCCC-CcEEEE-eCCHHHHHHHHHHhc--------------cccceEEEeCCCC
Q psy13086 18 KVEFVDVGCG-KL---YL---PMFPS-TLILGL-EIRVKVSDYVIDEWS--------------LYLKKMFFLYPDP 70 (169)
Q Consensus 18 ~~~iLDiGCG-~G---la---~~~p~-~~v~Gi-Dis~~~l~~a~~~~~--------------~~~d~v~~~f~d~ 70 (169)
..+|-=|||| -+ .+ ...++ ..++|+ |.++.-.+.+.++.. ..+|.|.+.-|+.
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 5678889999 33 11 22243 366766 999876655544321 4478887765543
No 414
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=20.77 E-value=1.5e+02 Score=21.34 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCeEEEEcCccc---ccCcC--CCCcEEEEeC-CHHHHHHHHHHhc-----------cccceEEEeCCCCcccccchhhh
Q psy13086 18 KVEFVDVGCGKL---YLPMF--PSTLILGLEI-RVKVSDYVIDEWS-----------LYLKKMFFLYPDPHFKRCKYKWR 80 (169)
Q Consensus 18 ~~~iLDiGCG~G---la~~~--p~~~v~GiDi-s~~~l~~a~~~~~-----------~~~d~v~~~f~d~~f~~~h~~~~ 80 (169)
..+|==||+|.= |+..+ .+..|.|+-- |....+.|...+. ...|.+++..||..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda--------- 80 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA--------- 80 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH---------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH---------
Confidence 457778898864 44332 3568888853 3434455544332 45677777777752
Q ss_pred cccHHHHHHHHHh--ccCCcEEEEEe
Q psy13086 81 IINQNLLSEYAYV--LSEGGIVYTIT 104 (169)
Q Consensus 81 ~~~~~~l~~~~rv--LkpGG~l~i~~ 104 (169)
...+.+++... ++||-.++.++
T Consensus 81 --I~~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 81 --IAEVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp --HHHHHHHHHCC--S-TT-EEEES-
T ss_pred --HHHHHHHHHHhccCCCCcEEEECC
Confidence 24566666665 66776655544
No 415
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=20.67 E-value=93 Score=26.63 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=42.7
Q ss_pred CeEEEEcCccc---------ccCcCCCCcEEEEeCCHH-HHHHHHHHhccccceEEEeCCCCcccccchhh---hcccHH
Q psy13086 19 VEFVDVGCGKL---------YLPMFPSTLILGLEIRVK-VSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKW---RIINQN 85 (169)
Q Consensus 19 ~~iLDiGCG~G---------la~~~p~~~v~GiDis~~-~l~~a~~~~~~~~d~v~~~f~d~~f~~~h~~~---~~~~~~ 85 (169)
...+=+++|+| +...+|+.+|+|||.... .+...+ .....++.+-..++....+ ..... .+...+
T Consensus 217 ~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~-~~~~~i~g~g~~~~p~~~~-~~~~d~~v~Vsd~e 294 (368)
T PLN02556 217 VDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGK-PGPHHITGNGVGFKPDILD-MDVMEKVLEVSSED 294 (368)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCC-CCCeeeeeccCCCCccccc-hhhCCeEEEECHHH
Confidence 45677888888 445678999999999653 221100 0001111111122211111 01111 112367
Q ss_pred HHHHHHHhccCCcEEEE
Q psy13086 86 LLSEYAYVLSEGGIVYT 102 (169)
Q Consensus 86 ~l~~~~rvLkpGG~l~i 102 (169)
.+..+.++++..|.+.=
T Consensus 295 a~~a~r~l~~~eGi~vg 311 (368)
T PLN02556 295 AVNMARELALKEGLMVG 311 (368)
T ss_pred HHHHHHHHHHHcCCEEe
Confidence 88888888888888764
No 416
>KOG3543|consensus
Probab=20.45 E-value=3.5e+02 Score=25.57 Aligned_cols=87 Identities=13% Similarity=0.155 Sum_probs=53.8
Q ss_pred CCCCcEEEEeCCHHHHHHH---HHHhc----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086 34 FPSTLILGLEIRVKVSDYV---IDEWS----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV 106 (169)
Q Consensus 34 ~p~~~v~GiDis~~~l~~a---~~~~~----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~ 106 (169)
+....++-|-+|.-....+ .++.. -++|..++.|.||++... -=+.+....|.|-.++|++|.
T Consensus 481 wkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglq----------gg~~ffnavkegdtvifasdd 550 (1218)
T KOG3543|consen 481 WKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQ----------GGKHFFNAVKEGDTVIFASDD 550 (1218)
T ss_pred hHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccc----------cchHHHHHhccCceEEeccCc
Confidence 3344566666665333322 22222 678888899999876432 223455678999999999877
Q ss_pred h-HHHHHHHHHHhcCC-CceecCccc
Q psy13086 107 K-DLHDWIVSHFTEHP-LFVECDLEE 130 (169)
Q Consensus 107 ~-~~~~~~~~~~~~~~-~f~~~~~~~ 130 (169)
+ +.+.|....-+..+ .++++|...
T Consensus 551 eqdr~lwvqamyratgqsykpvpp~~ 576 (1218)
T KOG3543|consen 551 EQDRHLWVQAMYRATGQSYKPVPPKQ 576 (1218)
T ss_pred hhhhhHHHHHHHHhhCCcCCCCCchh
Confidence 5 45777776665544 456665543
No 417
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=20.27 E-value=3.9e+02 Score=20.18 Aligned_cols=70 Identities=9% Similarity=0.151 Sum_probs=46.1
Q ss_pred ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeC-CCC--------cccccchhhhc-ccHHHHHHHHHhccCC
Q psy13086 30 YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLY-PDP--------HFKRCKYKWRI-INQNLLSEYAYVLSEG 97 (169)
Q Consensus 30 la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f-~d~--------~f~~~h~~~~~-~~~~~l~~~~rvLkpG 97 (169)
++...|+..++-+|.+...+++..+-+. ..++.+++.. -.| +.+.. .+ .....++++...|.++
T Consensus 16 ~~~l~~~~~v~~ld~~~d~~~qI~~~L~~~~~i~~lhivsHG~~G~l~LG~~~l~~~----~L~~~~~~l~~w~~~L~~~ 91 (165)
T PF14252_consen 16 LAGLPPGVEVVILDPSRDGLEQIAQALAGYQNIDALHIVSHGSPGALQLGNTWLSAE----TLEQYADELAQWGQALADD 91 (165)
T ss_pred HhcCcCCCEEEEEeCCCchHHHHHHHHhcCCCCceEEEEcCCCcceEEECCceeCHH----HHHHHHHHHHHHHHHhCCC
Confidence 3445578899999999888887766555 4677777532 222 11110 11 1246789999999999
Q ss_pred cEEEEE
Q psy13086 98 GIVYTI 103 (169)
Q Consensus 98 G~l~i~ 103 (169)
|.+.+-
T Consensus 92 ~~IlLy 97 (165)
T PF14252_consen 92 GDILLY 97 (165)
T ss_pred CcEEEE
Confidence 988774
No 418
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=20.17 E-value=4.1e+02 Score=20.67 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=24.0
Q ss_pred HHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086 90 YAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121 (169)
Q Consensus 90 ~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~ 121 (169)
+++.|.++|+++-....+...+...+.+...+
T Consensus 63 la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag 94 (205)
T PF01596_consen 63 LAEALPEDGKITTIEIDPERAEIARENFRKAG 94 (205)
T ss_dssp HHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHhhcccceEEEecCcHHHHHHHHHHHHhcC
Confidence 45678889998887777777777777776655
No 419
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=20.09 E-value=4.8e+02 Score=21.21 Aligned_cols=81 Identities=6% Similarity=0.097 Sum_probs=44.2
Q ss_pred CCeEEEEcCccc------ccCcCCCCc-EEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccccc-----hhhh-cc--
Q psy13086 18 KVEFVDVGCGKL------YLPMFPSTL-ILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCK-----YKWR-II-- 82 (169)
Q Consensus 18 ~~~iLDiGCG~G------la~~~p~~~-v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~h-----~~~~-~~-- 82 (169)
+.+||=.|||+= +|+.. ++. +++++.++.-++.+++ +. .+.+ +...+...+... ..-+ ++
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~-~G--a~~~-i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKS-LG--AMQT-FNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH-cC--CceE-ecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 567777787432 33443 454 7899999887776643 21 1111 111111000000 0000 11
Q ss_pred ---cHHHHHHHHHhccCCcEEEEE
Q psy13086 83 ---NQNLLSEYAYVLSEGGIVYTI 103 (169)
Q Consensus 83 ---~~~~l~~~~rvLkpGG~l~i~ 103 (169)
....+.+..+.|++||++.+.
T Consensus 236 ~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 236 TAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEE
Confidence 256889999999999999886
Done!