RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13086
         (169 letters)



>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
           TrmB {Bacillus subtilis [TaxId: 1423]}
          Length = 204

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 39/75 (52%)

Query: 62  KMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121
           +++  + DP  K+   K R+   + L +Y  V+ +GG ++  TD + L ++ +  F+E+ 
Sbjct: 102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161

Query: 122 LFVECDLEELKRTDP 136
           L +     +L  ++ 
Sbjct: 162 LLLTYVSLDLHNSNL 176


>d1p8kz1 d.95.2.1 (Z:1-125) DNA endonuclease I-AniI {Aspergillus
           nidulans [TaxId: 162425]}
          Length = 125

 Score = 27.2 bits (60), Expect = 0.59
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 95  SEGGIVYTITDVKDLHDWIVSHFTEHPLF 123
               +   I D   L  +I+  F ++P+F
Sbjct: 63  EIEMVALRIRDKNHLKSFILPIFEKYPMF 91


>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia
           coli [TaxId: 562]}
          Length = 165

 Score = 26.1 bits (57), Expect = 1.7
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 71  HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI 103
              R   + R++N        +  S+   +Y I
Sbjct: 55  AAPRGWLRLRLLNGCNARSLNFATSDNRPLYVI 87


>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 161

 Score = 25.1 bits (54), Expect = 3.5
 Identities = 4/32 (12%), Positives = 11/32 (34%)

Query: 92  YVLSEGGIVYTITDVKDLHDWIVSHFTEHPLF 123
            +  +         +K+     ++   E+P F
Sbjct: 86  ILKKKKKKSVKSFQIKNNMFIFINCLIENPAF 117


>d2p8ta2 d.74.4.2 (A:83-199) Hypothetical protein PH0730 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 117

 Score = 23.7 bits (51), Expect = 9.9
 Identities = 12/43 (27%), Positives = 14/43 (32%)

Query: 127 DLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRHV 169
           D   LK   P V K     E+G  V     E      +   HV
Sbjct: 58  DFRPLKEMYPEVAKKIVDYEDGDAVIITWAETPAKALKSAIHV 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 720,850
Number of extensions: 34330
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 12
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)