BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13087
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 254
Score = 167 bits (423), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/139 (55%), Positives = 101/139 (72%), Gaps = 5/139 (3%)
Query: 4 EERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPT---CEKKVEFV 60
E + + LP+KRYYRQRAHSNP +DH +EYP SP DMDWS LYP K+ KKV
Sbjct: 3 EGQKIDLPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIA 62
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR--SQNKGQYENIACIRT 118
D+GCG+GGL++ LSP FP LILG+EIRV+V++YV DR+ ALR + +K ++NI +R
Sbjct: 63 DIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRG 122
Query: 119 NAMKYLPNYFRKAQVRRCF 137
NAMK+LPN+F K Q+ + F
Sbjct: 123 NAMKFLPNFFEKGQLSKMF 141
>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
Length = 246
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 98/133 (73%), Gaps = 5/133 (3%)
Query: 10 LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPT---CEKKVEFVDVGCGY 66
LP+KRYYRQRAHSNP +DH +EYP SP DMDWS LYP K+ KKV D+GCG+
Sbjct: 1 LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGF 60
Query: 67 GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR--SQNKGQYENIACIRTNAMKYL 124
GGL++ LSP FP LILG+EIRV+V++YV DR+ ALR + +K ++NI +R NAMK+L
Sbjct: 61 GGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFL 120
Query: 125 PNYFRKAQVRRCF 137
PN+F K Q+ + F
Sbjct: 121 PNFFEKGQLSKMF 133
>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
1
Length = 235
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 88/128 (68%), Gaps = 16/128 (12%)
Query: 26 ADHSVEYPPSPNDMDWSPLYPEL----------------KDPTCEKKVEFVDVGCGYGGL 69
DH++ YP P +MDWS LYPE K+ + +VEF D+GCGYGGL
Sbjct: 1 GDHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGL 60
Query: 70 LVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR 129
LV LSP+FP TLILGLEIRVKVSDYV DR+ ALR+ G ++NIAC+R+NAMK+LPN+F
Sbjct: 61 LVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY 120
Query: 130 KAQVRRCF 137
K Q+ + F
Sbjct: 121 KGQLTKMF 128
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
V+VG G G + + P +G++I+ V Y +D+V + NI + +
Sbjct: 46 VEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIKLLWVD 99
Query: 120 AMKYLPNYFRKAQVRRCFAN 139
L +YF ++ R + N
Sbjct: 100 GSD-LTDYFEDGEIDRLYLN 118
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 29 SVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR 88
+VE P S N + + LK + +D+GCG G LL L I G+++
Sbjct: 6 AVEKPISLNQQRMNGVVAALKQSNARR---VIDLGCGQGNLLKILLKDSFFEQITGVDVS 62
Query: 89 VKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF 128
+ + +R+ LR + Q+E + I+ A+ Y F
Sbjct: 63 YRSLEIAQERLDRLRLP-RNQWERLQLIQ-GALTYQDKRF 100
>pdb|4FP9|B Chain B, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|E Chain E, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|G Chain G, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|H Chain H, Human Mterf4-Nsun4 Protein Complex
Length = 335
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 106 NKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQ 145
N G E ++C+R+N NY ++ + RR C+L Q
Sbjct: 2 NGGVIEELSCVRSN------NYVQEPECRRNLVQCLLEKQ 35
>pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
Length = 281
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 23 NPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFV 60
N +A ++E P + ND + + P+L+ PT K VE V
Sbjct: 197 NAVAPGNIETPMTHNDFVFGTMRPDLEKPTL-KDVESV 233
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
+D+GCG G LL L I G+++ + + +R+ LR + Q+E + I+
Sbjct: 24 IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLP-RNQWERLQLIQ-G 81
Query: 120 AMKYLPNYF 128
A+ Y F
Sbjct: 82 ALTYQDKRF 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,118,271
Number of Sequences: 62578
Number of extensions: 199824
Number of successful extensions: 415
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 13
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)