Query psy13087
Match_columns 170
No_of_seqs 216 out of 2096
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:04:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3115|consensus 100.0 3.9E-29 8.4E-34 192.8 6.1 135 9-144 15-150 (249)
2 COG0220 Predicted S-adenosylme 99.7 2.2E-18 4.8E-23 137.0 5.2 122 11-144 8-131 (227)
3 PF02390 Methyltransf_4: Putat 99.7 6.1E-18 1.3E-22 131.9 5.1 95 37-144 6-100 (195)
4 TIGR00091 tRNA (guanine-N(7)-) 99.6 4.7E-16 1E-20 120.8 6.8 93 39-144 7-99 (194)
5 PRK14121 tRNA (guanine-N(7)-)- 99.5 2E-14 4.2E-19 122.1 7.6 82 56-144 123-204 (390)
6 PRK00121 trmB tRNA (guanine-N( 99.5 3.4E-14 7.4E-19 111.1 6.9 95 36-143 28-122 (202)
7 PF12847 Methyltransf_18: Meth 99.5 2E-13 4.3E-18 95.9 9.3 60 56-120 2-61 (112)
8 COG2230 Cfa Cyclopropane fatty 99.5 1.5E-13 3.3E-18 112.1 9.2 110 53-170 70-201 (283)
9 PF13847 Methyltransf_31: Meth 99.5 2.4E-13 5.2E-18 101.2 8.3 76 55-138 3-79 (152)
10 COG2226 UbiE Methylase involve 99.4 2.5E-13 5.4E-18 108.7 6.9 62 55-122 51-112 (238)
11 PRK01544 bifunctional N5-gluta 99.4 6.9E-13 1.5E-17 116.7 6.5 82 56-144 348-429 (506)
12 PRK07402 precorrin-6B methylas 99.3 7.3E-12 1.6E-16 97.1 9.5 63 55-123 40-102 (196)
13 TIGR00138 gidB 16S rRNA methyl 99.3 4.8E-12 1E-16 97.5 7.3 62 56-123 43-104 (181)
14 PRK00107 gidB 16S rRNA methylt 99.3 6.2E-12 1.3E-16 97.5 7.9 62 56-123 46-107 (187)
15 COG2242 CobL Precorrin-6B meth 99.3 7.4E-12 1.6E-16 96.3 8.1 67 55-127 34-100 (187)
16 PF05175 MTS: Methyltransferas 99.3 2.9E-12 6.3E-17 97.5 5.6 74 56-139 32-105 (170)
17 COG2890 HemK Methylase of poly 99.3 4E-12 8.7E-17 104.2 4.5 100 11-124 74-173 (280)
18 PF02353 CMAS: Mycolic acid cy 99.3 1.6E-11 3.4E-16 100.4 7.9 65 53-123 60-124 (273)
19 COG2263 Predicted RNA methylas 99.3 1.6E-11 3.5E-16 94.5 7.4 92 18-124 11-106 (198)
20 PF01209 Ubie_methyltran: ubiE 99.2 1.6E-11 3.5E-16 98.2 7.0 63 55-123 47-110 (233)
21 PF01596 Methyltransf_3: O-met 99.2 6.6E-12 1.4E-16 98.6 3.5 108 56-169 46-162 (205)
22 COG4122 Predicted O-methyltran 99.2 2.6E-11 5.6E-16 95.9 6.6 108 55-170 59-174 (219)
23 TIGR02469 CbiT precorrin-6Y C5 99.2 9E-11 1.9E-15 83.3 8.7 62 56-123 20-81 (124)
24 TIGR00080 pimt protein-L-isoas 99.2 1E-10 2.3E-15 92.0 9.9 64 55-124 77-141 (215)
25 TIGR03533 L3_gln_methyl protei 99.2 2.4E-11 5.1E-16 99.8 6.1 112 11-139 83-196 (284)
26 PRK08287 cobalt-precorrin-6Y C 99.2 1.3E-10 2.8E-15 89.4 9.7 61 56-122 32-92 (187)
27 TIGR02752 MenG_heptapren 2-hep 99.2 7.6E-11 1.6E-15 93.2 7.8 62 55-122 45-107 (231)
28 PRK14966 unknown domain/N5-glu 99.2 2.7E-11 5.8E-16 103.9 5.5 111 11-139 216-326 (423)
29 PLN02781 Probable caffeoyl-CoA 99.2 2.8E-11 6.1E-16 96.8 5.2 109 55-169 68-185 (234)
30 PRK11805 N5-glutamine S-adenos 99.2 3.4E-11 7.5E-16 99.9 5.8 111 11-138 95-207 (307)
31 PRK01544 bifunctional N5-gluta 99.2 3.1E-11 6.6E-16 106.3 5.6 118 11-139 77-213 (506)
32 PLN02233 ubiquinone biosynthes 99.1 3.7E-10 8E-15 91.6 10.3 65 55-122 73-138 (261)
33 PF13659 Methyltransf_26: Meth 99.1 8.3E-11 1.8E-15 83.2 5.6 79 57-142 2-80 (117)
34 TIGR00536 hemK_fam HemK family 99.1 1.1E-10 2.3E-15 95.8 6.7 101 11-124 76-178 (284)
35 COG4106 Tam Trans-aconitate me 99.1 8.9E-11 1.9E-15 92.2 5.9 58 56-124 31-88 (257)
36 PRK15451 tRNA cmo(5)U34 methyl 99.1 2.5E-10 5.4E-15 91.8 8.7 64 55-123 56-121 (247)
37 PRK13944 protein-L-isoaspartat 99.1 5.5E-10 1.2E-14 87.5 10.4 64 55-124 72-137 (205)
38 PF13649 Methyltransf_25: Meth 99.1 1.9E-10 4E-15 79.9 6.7 57 59-122 1-60 (101)
39 TIGR03534 RF_mod_PrmC protein- 99.1 7.1E-11 1.5E-15 94.1 5.2 74 56-139 88-161 (251)
40 TIGR03587 Pse_Me-ase pseudamin 99.1 8.8E-11 1.9E-15 92.1 5.6 56 56-122 44-99 (204)
41 TIGR00740 methyltransferase, p 99.1 3.3E-10 7.1E-15 90.4 8.9 63 56-123 54-118 (239)
42 PLN02476 O-methyltransferase 99.1 7.9E-11 1.7E-15 96.3 5.4 109 55-169 118-235 (278)
43 PRK13942 protein-L-isoaspartat 99.1 6.3E-10 1.4E-14 87.6 10.1 63 55-123 76-139 (212)
44 PLN02244 tocopherol O-methyltr 99.1 2.2E-10 4.7E-15 96.3 7.8 62 55-122 118-179 (340)
45 PRK11036 putative S-adenosyl-L 99.1 6E-10 1.3E-14 89.8 9.7 61 56-123 45-105 (255)
46 PRK14103 trans-aconitate 2-met 99.1 5.6E-10 1.2E-14 89.9 9.1 42 56-97 30-71 (255)
47 PRK01683 trans-aconitate 2-met 99.1 8E-10 1.7E-14 88.9 9.4 56 56-122 32-87 (258)
48 PF07021 MetW: Methionine bios 99.1 2.4E-10 5.3E-15 88.4 5.8 71 54-139 12-82 (193)
49 PRK09328 N5-glutamine S-adenos 99.1 1.7E-10 3.7E-15 93.3 5.1 73 56-138 109-181 (275)
50 PRK15001 SAM-dependent 23S rib 99.1 2.4E-10 5.1E-15 97.3 6.0 65 56-123 229-293 (378)
51 TIGR03704 PrmC_rel_meth putati 99.1 1.3E-10 2.9E-15 93.8 4.3 73 57-139 88-160 (251)
52 PRK06922 hypothetical protein; 99.1 3.5E-10 7.6E-15 101.3 7.2 73 56-136 419-491 (677)
53 PLN02396 hexaprenyldihydroxybe 99.1 1.1E-09 2.5E-14 91.4 9.7 62 55-123 131-192 (322)
54 PRK11207 tellurite resistance 99.0 8.6E-10 1.9E-14 85.8 8.1 59 56-122 31-89 (197)
55 PF03848 TehB: Tellurite resis 99.0 1.1E-09 2.4E-14 85.1 8.5 85 56-149 31-131 (192)
56 PRK04266 fibrillarin; Provisio 99.0 5.7E-10 1.2E-14 88.9 6.7 60 55-122 72-131 (226)
57 COG4123 Predicted O-methyltran 99.0 4.3E-10 9.2E-15 90.4 5.8 78 56-139 45-122 (248)
58 smart00828 PKS_MT Methyltransf 99.0 2.2E-09 4.7E-14 84.4 9.6 60 58-122 2-61 (224)
59 PLN02589 caffeoyl-CoA O-methyl 99.0 4E-10 8.8E-15 90.9 5.4 108 56-169 80-197 (247)
60 PRK13168 rumA 23S rRNA m(5)U19 99.0 7.9E-10 1.7E-14 95.9 7.4 76 55-138 297-373 (443)
61 PRK00377 cbiT cobalt-precorrin 99.0 1.8E-09 3.9E-14 84.0 8.7 65 55-124 40-105 (198)
62 PF08241 Methyltransf_11: Meth 99.0 1E-09 2.3E-14 73.9 6.3 67 60-139 1-67 (95)
63 smart00650 rADc Ribosomal RNA 99.0 7.5E-10 1.6E-14 84.0 6.2 58 56-123 14-71 (169)
64 PRK03522 rumB 23S rRNA methylu 99.0 8.6E-10 1.9E-14 91.7 6.9 74 56-139 174-247 (315)
65 PRK13943 protein-L-isoaspartat 99.0 4.6E-09 9.9E-14 87.8 10.7 64 55-124 80-144 (322)
66 PRK11873 arsM arsenite S-adeno 99.0 1.5E-09 3.2E-14 88.1 7.6 63 54-122 76-139 (272)
67 PRK04457 spermidine synthase; 99.0 5.9E-10 1.3E-14 90.6 5.0 64 56-124 67-130 (262)
68 COG2227 UbiG 2-polyprenyl-3-me 99.0 2.1E-09 4.6E-14 85.7 7.9 45 55-101 59-103 (243)
69 KOG1271|consensus 99.0 8.1E-10 1.7E-14 84.9 5.1 86 56-154 68-154 (227)
70 TIGR00479 rumA 23S rRNA (uraci 99.0 1.2E-09 2.7E-14 94.3 6.7 77 55-139 292-369 (431)
71 TIGR02021 BchM-ChlM magnesium 99.0 3.2E-09 7E-14 83.5 8.5 60 56-122 56-115 (219)
72 PRK10909 rsmD 16S rRNA m(2)G96 99.0 1.7E-09 3.7E-14 84.6 6.8 75 56-139 54-128 (199)
73 PF01135 PCMT: Protein-L-isoas 99.0 1.9E-09 4.2E-14 84.9 7.0 76 54-138 71-147 (209)
74 COG2518 Pcm Protein-L-isoaspar 99.0 2E-09 4.4E-14 84.4 6.9 66 53-126 70-135 (209)
75 PRK12335 tellurite resistance 98.9 2.4E-09 5.2E-14 87.9 6.7 58 56-122 121-178 (287)
76 PF08242 Methyltransf_12: Meth 98.9 7.2E-11 1.6E-15 81.5 -2.3 43 60-102 1-43 (99)
77 PLN02672 methionine S-methyltr 98.9 2.1E-09 4.6E-14 101.2 6.4 108 11-124 80-197 (1082)
78 PRK00312 pcm protein-L-isoaspa 98.9 1.4E-08 3E-13 79.6 10.0 61 55-123 78-138 (212)
79 TIGR03840 TMPT_Se_Te thiopurin 98.9 2E-09 4.4E-14 85.0 5.3 66 56-123 35-106 (213)
80 COG2813 RsmC 16S RNA G1207 met 98.9 2.7E-09 5.8E-14 87.7 6.1 62 56-123 159-220 (300)
81 PRK00811 spermidine synthase; 98.9 3E-09 6.5E-14 87.4 6.3 69 56-125 77-145 (283)
82 TIGR00477 tehB tellurite resis 98.9 7.1E-09 1.5E-13 80.6 8.0 56 56-120 31-86 (195)
83 PRK08317 hypothetical protein; 98.9 1.4E-08 3.1E-13 79.5 9.8 60 56-122 20-80 (241)
84 PRK11088 rrmA 23S rRNA methylt 98.9 2.9E-09 6.3E-14 86.7 5.8 56 56-122 86-144 (272)
85 PRK09489 rsmC 16S ribosomal RN 98.9 3.1E-09 6.6E-14 89.5 6.0 60 56-122 197-256 (342)
86 PRK00274 ksgA 16S ribosomal RN 98.9 6.6E-09 1.4E-13 84.8 7.8 57 56-123 43-99 (272)
87 PRK11705 cyclopropane fatty ac 98.9 9.7E-09 2.1E-13 87.7 9.0 59 54-122 166-224 (383)
88 PRK06202 hypothetical protein; 98.9 3.5E-09 7.5E-14 84.1 5.7 45 56-100 61-109 (232)
89 PTZ00098 phosphoethanolamine N 98.9 4.5E-09 9.7E-14 85.4 6.4 60 54-122 51-110 (263)
90 PRK14967 putative methyltransf 98.9 6.1E-09 1.3E-13 82.4 7.0 60 56-123 37-96 (223)
91 PRK00517 prmA ribosomal protei 98.9 8.3E-09 1.8E-13 83.1 7.8 59 54-119 118-177 (250)
92 PRK14902 16S rRNA methyltransf 98.9 6.3E-09 1.4E-13 90.3 7.4 77 54-138 249-326 (444)
93 TIGR00537 hemK_rel_arch HemK-r 98.9 1.4E-08 3.1E-13 77.5 8.4 58 56-122 20-77 (179)
94 COG2264 PrmA Ribosomal protein 98.8 1.3E-08 2.8E-13 84.0 8.5 49 53-102 160-208 (300)
95 TIGR02716 C20_methyl_CrtF C-20 98.8 1.1E-08 2.5E-13 84.4 8.2 63 54-122 148-210 (306)
96 PLN02336 phosphoethanolamine N 98.8 2E-08 4.4E-13 87.5 9.9 60 55-122 266-325 (475)
97 PRK15068 tRNA mo(5)U34 methylt 98.8 2.8E-08 6.1E-13 83.0 10.3 61 56-122 123-183 (322)
98 PF09445 Methyltransf_15: RNA 98.8 5.1E-09 1.1E-13 79.4 5.1 74 58-138 2-75 (163)
99 TIGR00095 RNA methyltransferas 98.8 8.7E-09 1.9E-13 79.9 6.5 63 56-125 50-113 (189)
100 PRK00216 ubiE ubiquinone/menaq 98.8 9.1E-09 2E-13 80.9 6.7 62 56-122 52-114 (239)
101 TIGR03438 probable methyltrans 98.8 1.5E-08 3.2E-13 83.9 8.0 62 56-122 64-126 (301)
102 KOG3420|consensus 98.8 1.8E-09 3.9E-14 80.2 2.2 87 21-123 16-108 (185)
103 TIGR02072 BioC biotin biosynth 98.8 9.8E-09 2.1E-13 80.6 6.5 58 56-123 35-92 (240)
104 PTZ00338 dimethyladenosine tra 98.8 2.1E-08 4.5E-13 82.9 8.4 62 55-123 36-97 (294)
105 PRK10901 16S rRNA methyltransf 98.8 1.3E-08 2.8E-13 88.0 7.5 77 54-138 243-319 (427)
106 PRK07580 Mg-protoporphyrin IX 98.8 2.2E-08 4.7E-13 78.8 8.2 58 56-121 64-122 (230)
107 PRK14896 ksgA 16S ribosomal RN 98.8 1.5E-08 3.2E-13 82.1 7.3 58 56-123 30-87 (258)
108 TIGR02085 meth_trns_rumB 23S r 98.8 1.8E-08 3.9E-13 85.8 8.1 74 56-139 234-307 (374)
109 KOG1270|consensus 98.8 5.4E-09 1.2E-13 84.3 4.5 42 56-99 90-131 (282)
110 PRK14968 putative methyltransf 98.8 2.8E-08 6E-13 75.6 8.3 60 56-123 24-85 (188)
111 PHA03411 putative methyltransf 98.8 1.1E-08 2.3E-13 83.6 6.1 58 56-124 65-122 (279)
112 TIGR02143 trmA_only tRNA (urac 98.8 1.9E-08 4.2E-13 85.0 7.8 61 57-125 199-259 (353)
113 PF06325 PrmA: Ribosomal prote 98.8 2.1E-08 4.5E-13 82.9 7.7 49 53-102 159-207 (295)
114 PLN02585 magnesium protoporphy 98.8 2.9E-08 6.2E-13 82.8 8.6 63 56-121 145-207 (315)
115 PRK14903 16S rRNA methyltransf 98.8 2.3E-08 4.9E-13 86.7 8.2 77 54-138 236-313 (431)
116 TIGR02081 metW methionine bios 98.8 1.2E-08 2.5E-13 79.0 5.7 41 56-97 14-54 (194)
117 PLN03075 nicotianamine synthas 98.8 2.1E-08 4.6E-13 82.7 7.5 63 56-123 124-189 (296)
118 KOG1540|consensus 98.8 2.7E-08 5.9E-13 80.0 7.8 96 55-156 100-219 (296)
119 TIGR00406 prmA ribosomal prote 98.8 3.7E-08 8.1E-13 81.0 8.9 48 54-102 158-205 (288)
120 PRK13255 thiopurine S-methyltr 98.8 2.4E-08 5.2E-13 79.2 7.3 66 56-123 38-109 (218)
121 PRK05031 tRNA (uracil-5-)-meth 98.8 3E-08 6.4E-13 84.1 7.9 62 57-126 208-269 (362)
122 PRK15128 23S rRNA m(5)C1962 me 98.7 1.4E-08 3.1E-13 87.0 5.9 64 55-125 220-285 (396)
123 PRK10258 biotin biosynthesis p 98.7 1.2E-08 2.6E-13 81.8 5.1 42 56-99 43-84 (251)
124 PRK14904 16S rRNA methyltransf 98.7 3.3E-08 7.1E-13 85.9 7.8 65 54-124 249-314 (445)
125 PRK14901 16S rRNA methyltransf 98.7 3E-08 6.4E-13 85.9 7.5 79 54-138 251-331 (434)
126 PRK05785 hypothetical protein; 98.7 2E-08 4.4E-13 79.8 6.0 42 56-98 52-93 (226)
127 PLN02490 MPBQ/MSBQ methyltrans 98.7 4E-08 8.8E-13 82.6 7.8 58 56-122 114-171 (340)
128 TIGR00755 ksgA dimethyladenosi 98.7 3.8E-08 8.2E-13 79.4 7.2 58 56-123 30-87 (253)
129 PRK01581 speE spermidine synth 98.7 1.4E-08 3E-13 85.9 4.8 69 56-125 151-221 (374)
130 PF05401 NodS: Nodulation prot 98.7 1.2E-08 2.5E-13 79.4 3.9 60 56-125 44-103 (201)
131 TIGR01177 conserved hypothetic 98.7 4.6E-08 9.9E-13 81.8 7.8 60 55-122 182-241 (329)
132 TIGR00452 methyltransferase, p 98.7 1.5E-07 3.2E-12 78.5 10.3 62 55-122 121-182 (314)
133 KOG2904|consensus 98.7 6.2E-08 1.3E-12 78.7 7.7 56 56-116 149-204 (328)
134 TIGR00446 nop2p NOL1/NOP2/sun 98.7 8.5E-08 1.8E-12 77.9 8.5 64 54-123 70-134 (264)
135 PRK11727 23S rRNA mA1618 methy 98.7 5E-08 1.1E-12 81.5 7.2 58 55-117 114-172 (321)
136 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.4E-08 7.3E-13 90.3 6.6 64 55-125 538-603 (702)
137 cd02440 AdoMet_MTases S-adenos 98.7 5.1E-08 1.1E-12 65.2 5.8 60 58-124 1-60 (107)
138 PLN02366 spermidine synthase 98.7 4.2E-08 9E-13 81.6 6.1 69 55-125 91-159 (308)
139 PTZ00146 fibrillarin; Provisio 98.7 5.5E-08 1.2E-12 80.1 6.4 61 53-121 130-191 (293)
140 PHA03412 putative methyltransf 98.7 3.8E-08 8.3E-13 78.8 5.4 56 56-122 50-108 (241)
141 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 4.6E-08 1E-12 76.1 5.7 60 56-123 40-100 (223)
142 PLN02336 phosphoethanolamine N 98.6 7.4E-08 1.6E-12 84.0 6.1 56 56-121 38-93 (475)
143 smart00138 MeTrc Methyltransfe 98.6 1.3E-07 2.9E-12 76.9 7.1 44 56-99 100-152 (264)
144 PF02475 Met_10: Met-10+ like- 98.6 1.2E-07 2.7E-12 74.2 6.6 80 54-142 100-179 (200)
145 TIGR00417 speE spermidine synt 98.6 1.1E-07 2.3E-12 77.5 6.2 67 56-124 73-139 (270)
146 TIGR01444 fkbM_fam methyltrans 98.6 2.3E-07 5.1E-12 67.8 7.4 58 58-121 1-58 (143)
147 COG2519 GCD14 tRNA(1-methylade 98.6 1.5E-07 3.2E-12 75.7 6.7 82 53-144 92-175 (256)
148 PRK03612 spermidine synthase; 98.6 5.5E-08 1.2E-12 86.1 4.6 68 56-125 298-368 (521)
149 TIGR01983 UbiG ubiquinone bios 98.6 2.4E-07 5.1E-12 72.7 7.3 61 56-124 46-106 (224)
150 TIGR00563 rsmB ribosomal RNA s 98.5 2.1E-07 4.5E-12 80.5 7.3 62 54-121 237-299 (426)
151 KOG1541|consensus 98.5 6.1E-08 1.3E-12 76.6 3.5 41 56-98 51-91 (270)
152 PF08704 GCD14: tRNA methyltra 98.5 3.6E-07 7.9E-12 73.7 8.2 87 53-145 38-126 (247)
153 COG2265 TrmA SAM-dependent met 98.5 2.1E-07 4.7E-12 80.6 6.8 76 55-138 293-368 (432)
154 PRK04338 N(2),N(2)-dimethylgua 98.5 2.9E-07 6.3E-12 78.7 6.6 63 57-125 59-121 (382)
155 COG0030 KsgA Dimethyladenosine 98.5 3.9E-07 8.5E-12 73.9 6.9 59 55-123 30-88 (259)
156 PF05958 tRNA_U5-meth_tr: tRNA 98.5 2.6E-07 5.7E-12 78.1 5.9 60 57-124 198-257 (352)
157 PRK00050 16S rRNA m(4)C1402 me 98.5 4.9E-07 1.1E-11 74.8 7.4 61 56-124 20-81 (296)
158 PRK11188 rrmJ 23S rRNA methylt 98.5 3.6E-07 7.7E-12 71.9 6.2 35 55-89 51-86 (209)
159 KOG2187|consensus 98.5 1.4E-07 3.1E-12 82.1 4.0 67 53-127 381-447 (534)
160 PRK04148 hypothetical protein; 98.4 7.2E-07 1.6E-11 65.6 6.8 52 56-122 17-69 (134)
161 PF13489 Methyltransf_23: Meth 98.4 7E-07 1.5E-11 65.8 6.1 88 55-149 22-113 (161)
162 PF01170 UPF0020: Putative RNA 98.4 5.9E-07 1.3E-11 69.1 5.5 76 56-139 29-113 (179)
163 TIGR00438 rrmJ cell division p 98.4 5.4E-07 1.2E-11 69.3 5.2 37 55-91 32-69 (188)
164 PF13679 Methyltransf_32: Meth 98.4 1.3E-06 2.9E-11 64.4 6.8 62 56-121 26-92 (141)
165 PRK05134 bifunctional 3-demeth 98.4 1.8E-06 4E-11 68.2 8.0 59 56-123 49-107 (233)
166 KOG2899|consensus 98.3 9.5E-07 2.1E-11 70.8 4.9 46 56-101 59-104 (288)
167 KOG3191|consensus 98.3 1.9E-06 4.1E-11 66.3 6.1 72 56-138 44-116 (209)
168 KOG1499|consensus 98.3 2.2E-06 4.8E-11 71.7 6.7 61 55-123 60-121 (346)
169 PF08003 Methyltransf_9: Prote 98.2 3E-06 6.4E-11 70.1 6.9 42 55-97 115-156 (315)
170 COG4976 Predicted methyltransf 98.2 4.2E-07 9E-12 72.4 1.6 41 56-98 126-166 (287)
171 PRK13256 thiopurine S-methyltr 98.2 3E-06 6.4E-11 67.6 5.9 66 56-123 44-115 (226)
172 PF08123 DOT1: Histone methyla 98.1 8.9E-06 1.9E-10 64.0 7.3 68 55-122 42-112 (205)
173 PF00891 Methyltransf_2: O-met 98.1 9.9E-06 2.2E-10 64.5 7.7 57 56-125 101-157 (241)
174 TIGR00478 tly hemolysin TlyA f 98.1 5.1E-06 1.1E-10 66.4 5.8 39 55-94 75-113 (228)
175 PF02527 GidB: rRNA small subu 98.1 2.4E-05 5.2E-10 60.5 9.1 59 58-122 51-109 (184)
176 KOG3010|consensus 98.1 1.7E-06 3.6E-11 69.2 2.3 41 57-99 35-75 (261)
177 PLN02823 spermine synthase 98.1 5.2E-06 1.1E-10 69.9 5.3 68 56-125 104-171 (336)
178 KOG2730|consensus 98.1 1.5E-06 3.3E-11 68.7 1.8 76 56-138 95-171 (263)
179 COG0742 N6-adenine-specific me 98.1 1.5E-05 3.3E-10 61.7 7.2 77 56-138 44-120 (187)
180 PF03291 Pox_MCEL: mRNA cappin 98.0 1.8E-05 4E-10 66.5 7.5 47 55-102 62-108 (331)
181 KOG0820|consensus 98.0 1.9E-05 4.2E-10 64.3 7.3 65 53-124 56-120 (315)
182 PF00398 RrnaAD: Ribosomal RNA 98.0 1.2E-05 2.5E-10 65.3 6.0 59 55-123 30-88 (262)
183 PF03602 Cons_hypoth95: Conser 98.0 2.6E-05 5.6E-10 60.3 7.4 63 56-125 43-106 (183)
184 PF05185 PRMT5: PRMT5 arginine 98.0 3.2E-05 7E-10 67.5 8.2 62 56-123 187-253 (448)
185 PF10294 Methyltransf_16: Puta 98.0 2.2E-05 4.7E-10 60.0 6.4 62 55-120 45-106 (173)
186 KOG1975|consensus 98.0 2.1E-05 4.6E-10 65.5 6.6 68 54-122 116-183 (389)
187 PF05724 TPMT: Thiopurine S-me 98.0 1.5E-05 3.2E-10 63.3 5.3 66 56-123 38-109 (218)
188 PF12147 Methyltransf_20: Puta 97.9 7.4E-05 1.6E-09 61.5 9.1 64 54-123 134-200 (311)
189 COG4076 Predicted RNA methylas 97.9 1.4E-05 3E-10 62.1 4.3 59 57-123 34-92 (252)
190 KOG1663|consensus 97.9 1.4E-05 3.1E-10 63.5 4.5 107 55-167 73-188 (237)
191 TIGR00308 TRM1 tRNA(guanine-26 97.9 4.2E-05 9.1E-10 65.3 7.6 63 57-125 46-109 (374)
192 PRK11933 yebU rRNA (cytosine-C 97.8 8.4E-05 1.8E-09 65.2 8.5 77 54-138 112-189 (470)
193 PRK11783 rlmL 23S rRNA m(2)G24 97.8 6.6E-05 1.4E-09 68.9 8.1 63 56-123 191-295 (702)
194 COG0357 GidB Predicted S-adeno 97.8 7.5E-05 1.6E-09 59.1 6.7 85 56-146 68-163 (215)
195 KOG4300|consensus 97.8 3.3E-05 7.1E-10 60.8 4.6 59 57-122 78-137 (252)
196 COG2520 Predicted methyltransf 97.8 5.7E-05 1.2E-09 63.6 6.1 79 54-142 187-266 (341)
197 KOG1661|consensus 97.7 0.00013 2.8E-09 57.5 6.5 73 53-125 80-158 (237)
198 PF04816 DUF633: Family of unk 97.7 0.00024 5.3E-09 55.9 7.9 62 59-125 1-62 (205)
199 COG1041 Predicted DNA modifica 97.6 5.5E-05 1.2E-09 63.6 4.1 61 54-122 196-257 (347)
200 PF01564 Spermine_synth: Sperm 97.6 9.4E-05 2E-09 59.7 4.9 69 56-126 77-145 (246)
201 COG1092 Predicted SAM-dependen 97.6 8.2E-05 1.8E-09 63.8 4.7 64 56-126 218-283 (393)
202 KOG1500|consensus 97.6 0.0002 4.2E-09 60.3 6.6 61 56-123 178-238 (517)
203 TIGR02987 met_A_Alw26 type II 97.5 0.00019 4.2E-09 63.6 5.5 47 56-102 32-86 (524)
204 PRK10742 putative methyltransf 97.4 0.00048 1E-08 55.6 6.9 78 57-138 90-170 (250)
205 PF05971 Methyltransf_10: Prot 97.4 0.0004 8.7E-09 57.6 6.6 59 56-119 103-162 (299)
206 PF06080 DUF938: Protein of un 97.4 0.0003 6.5E-09 55.2 5.3 45 58-102 28-72 (204)
207 PF10672 Methyltrans_SAM: S-ad 97.4 0.00021 4.6E-09 58.9 4.7 65 54-125 122-188 (286)
208 COG0116 Predicted N6-adenine-s 97.4 0.00036 7.8E-09 59.5 5.8 76 56-139 192-306 (381)
209 TIGR03439 methyl_EasF probable 97.4 0.00064 1.4E-08 56.9 7.2 62 56-123 77-144 (319)
210 COG0421 SpeE Spermidine syntha 97.4 0.00043 9.4E-09 57.0 6.0 67 57-126 78-145 (282)
211 COG0144 Sun tRNA and rRNA cyto 97.4 0.00065 1.4E-08 57.7 7.2 79 54-138 155-235 (355)
212 TIGR00006 S-adenosyl-methyltra 97.4 0.0012 2.7E-08 54.9 8.6 62 56-124 21-82 (305)
213 PF02384 N6_Mtase: N-6 DNA Met 97.2 0.00048 1E-08 56.8 4.9 46 56-101 47-99 (311)
214 KOG2915|consensus 97.2 0.0016 3.4E-08 53.3 7.3 86 53-144 103-189 (314)
215 PF05219 DREV: DREV methyltran 97.2 0.0013 2.7E-08 53.5 6.5 41 56-98 95-135 (265)
216 COG2521 Predicted archaeal met 97.1 0.00019 4.2E-09 57.5 1.2 75 54-136 133-209 (287)
217 PF09243 Rsm22: Mitochondrial 97.1 0.0013 2.8E-08 53.9 5.7 46 56-101 34-80 (274)
218 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.0041 8.9E-08 51.2 8.6 65 54-124 84-149 (283)
219 KOG2361|consensus 97.0 0.00052 1.1E-08 55.2 2.6 44 58-101 74-119 (264)
220 PF01728 FtsJ: FtsJ-like methy 96.9 0.00082 1.8E-08 51.1 3.2 35 56-90 24-59 (181)
221 PF07091 FmrO: Ribosomal RNA m 96.9 0.0044 9.5E-08 50.1 7.4 61 56-123 106-166 (251)
222 PRK11760 putative 23S rRNA C24 96.9 0.002 4.4E-08 54.4 5.5 57 54-125 210-266 (357)
223 COG3963 Phospholipid N-methylt 96.8 0.005 1.1E-07 47.1 6.2 56 56-122 49-105 (194)
224 KOG1501|consensus 96.7 0.0035 7.5E-08 54.5 5.7 56 56-117 67-122 (636)
225 PF01269 Fibrillarin: Fibrilla 96.7 0.0065 1.4E-07 48.4 6.8 63 53-123 71-134 (229)
226 COG0500 SmtA SAM-dependent met 96.7 0.0053 1.1E-07 42.2 5.5 40 59-99 52-92 (257)
227 PF07757 AdoMet_MTase: Predict 96.6 0.0015 3.3E-08 46.2 2.6 32 56-89 59-90 (112)
228 PF13578 Methyltransf_24: Meth 96.6 0.00027 5.9E-09 49.1 -1.3 72 60-138 1-75 (106)
229 PRK11524 putative methyltransf 96.6 0.0062 1.3E-07 50.0 6.2 46 54-101 207-252 (284)
230 PF01795 Methyltransf_5: MraW 96.5 0.0048 1E-07 51.5 5.0 60 56-122 21-80 (310)
231 COG0293 FtsJ 23S rRNA methylas 96.4 0.0062 1.3E-07 47.9 5.0 51 54-121 44-95 (205)
232 COG2384 Predicted SAM-dependen 96.3 0.012 2.6E-07 46.7 6.0 64 56-124 17-80 (226)
233 COG1889 NOP1 Fibrillarin-like 96.3 0.0064 1.4E-07 47.9 4.3 62 53-122 74-135 (231)
234 KOG4058|consensus 96.3 0.0062 1.3E-07 45.8 4.0 62 56-123 73-134 (199)
235 PF01555 N6_N4_Mtase: DNA meth 96.3 0.0097 2.1E-07 45.9 5.4 41 55-97 191-231 (231)
236 PRK13699 putative methylase; P 96.1 0.017 3.8E-07 46.0 6.3 47 54-102 162-208 (227)
237 PHA01634 hypothetical protein 96.1 0.017 3.6E-07 42.4 5.5 45 56-101 29-73 (156)
238 PF11599 AviRa: RRNA methyltra 96.1 0.013 2.8E-07 46.6 5.2 45 56-100 52-98 (246)
239 KOG1122|consensus 96.1 0.014 3.1E-07 50.4 5.7 80 53-139 239-319 (460)
240 PF04445 SAM_MT: Putative SAM- 96.0 0.0078 1.7E-07 48.3 3.7 78 57-138 77-157 (234)
241 COG3897 Predicted methyltransf 95.8 0.008 1.7E-07 47.1 3.0 60 55-122 79-138 (218)
242 KOG3987|consensus 95.7 0.0017 3.7E-08 51.4 -1.1 86 56-143 113-198 (288)
243 PF01739 CheR: CheR methyltran 95.7 0.017 3.8E-07 45.1 4.5 43 56-98 32-83 (196)
244 KOG4589|consensus 95.6 0.02 4.3E-07 44.7 4.3 36 53-88 67-103 (232)
245 PRK00536 speE spermidine synth 95.5 0.14 3E-06 41.8 9.4 85 56-146 73-166 (262)
246 COG4262 Predicted spermidine s 95.3 0.062 1.3E-06 46.0 6.5 69 55-125 289-360 (508)
247 PRK10611 chemotaxis methyltran 95.0 0.05 1.1E-06 45.0 5.3 43 56-98 116-166 (287)
248 PF04989 CmcI: Cephalosporin h 95.0 0.024 5.2E-07 44.7 3.2 60 56-122 33-96 (206)
249 COG0275 Predicted S-adenosylme 94.9 0.16 3.5E-06 42.3 7.9 61 56-123 24-85 (314)
250 KOG3178|consensus 94.7 0.095 2E-06 44.3 6.3 75 56-142 178-263 (342)
251 KOG1709|consensus 94.7 0.075 1.6E-06 42.4 5.3 64 54-125 100-163 (271)
252 COG1352 CheR Methylase of chem 94.6 0.063 1.4E-06 44.0 4.9 43 56-98 97-148 (268)
253 PLN02232 ubiquinone biosynthes 94.3 0.033 7.2E-07 41.7 2.4 38 83-123 1-38 (160)
254 KOG2940|consensus 94.3 0.1 2.2E-06 42.2 5.1 42 56-98 73-114 (325)
255 KOG3115|consensus 94.2 0.017 3.7E-07 45.6 0.6 29 141-169 111-139 (249)
256 PF03141 Methyltransf_29: Puta 94.2 0.047 1E-06 48.2 3.3 40 57-98 119-161 (506)
257 PF03059 NAS: Nicotianamine sy 94.1 0.18 4E-06 41.5 6.4 63 57-123 122-186 (276)
258 PF05891 Methyltransf_PK: AdoM 94.0 0.2 4.3E-06 39.8 6.2 80 56-142 56-149 (218)
259 KOG2651|consensus 93.9 0.11 2.3E-06 44.7 4.9 42 56-98 154-195 (476)
260 PF06962 rRNA_methylase: Putat 93.7 0.079 1.7E-06 39.3 3.3 53 81-139 1-53 (140)
261 PF01861 DUF43: Protein of unk 93.7 0.18 3.8E-06 40.7 5.5 64 56-127 45-108 (243)
262 PF05206 TRM13: Methyltransfer 93.5 0.13 2.9E-06 41.9 4.7 62 56-123 19-85 (259)
263 PF02636 Methyltransf_28: Puta 93.0 0.13 2.9E-06 41.2 4.0 45 57-101 20-72 (252)
264 KOG2078|consensus 92.6 0.085 1.8E-06 45.8 2.4 64 55-124 249-312 (495)
265 KOG1331|consensus 92.5 0.061 1.3E-06 44.3 1.3 39 56-98 46-84 (293)
266 PF04672 Methyltransf_19: S-ad 92.3 0.36 7.9E-06 39.5 5.6 58 57-122 70-132 (267)
267 COG1189 Predicted rRNA methyla 91.6 0.29 6.2E-06 39.5 4.2 39 55-94 79-117 (245)
268 cd00315 Cyt_C5_DNA_methylase C 91.6 0.43 9.4E-06 38.9 5.4 41 58-99 2-42 (275)
269 PF05050 Methyltransf_21: Meth 90.9 0.56 1.2E-05 34.1 5.0 38 61-98 1-42 (167)
270 cd08283 FDH_like_1 Glutathione 90.8 0.7 1.5E-05 39.1 6.1 45 54-98 183-228 (386)
271 COG0286 HsdM Type I restrictio 90.6 0.51 1.1E-05 41.8 5.2 47 56-102 187-237 (489)
272 COG1867 TRM1 N2,N2-dimethylgua 90.6 0.83 1.8E-05 39.1 6.2 64 56-125 53-116 (380)
273 PF02254 TrkA_N: TrkA-N domain 89.2 0.98 2.1E-05 31.2 4.9 46 64-122 4-51 (116)
274 KOG2920|consensus 89.2 0.28 6.1E-06 40.4 2.3 37 56-93 117-153 (282)
275 KOG1098|consensus 88.7 0.44 9.6E-06 43.4 3.3 36 54-89 43-79 (780)
276 COG3129 Predicted SAM-dependen 88.4 0.45 9.7E-06 38.5 2.8 47 55-101 78-124 (292)
277 KOG1269|consensus 88.1 0.37 8E-06 41.2 2.4 48 54-102 109-156 (364)
278 PF02005 TRM: N2,N2-dimethylgu 87.0 2.4 5.2E-05 36.4 6.7 63 56-124 50-115 (377)
279 KOG0024|consensus 86.6 2 4.3E-05 36.3 5.8 44 54-97 168-212 (354)
280 KOG2912|consensus 86.5 0.65 1.4E-05 39.2 2.8 56 60-120 107-162 (419)
281 KOG2198|consensus 86.3 2 4.4E-05 36.8 5.8 98 53-166 153-261 (375)
282 COG1565 Uncharacterized conser 85.8 2.2 4.8E-05 36.5 5.8 91 5-102 25-132 (370)
283 COG0863 DNA modification methy 85.8 2.4 5.2E-05 34.2 5.9 46 55-102 222-267 (302)
284 COG1063 Tdh Threonine dehydrog 85.6 2.4 5.2E-05 35.7 6.0 43 56-98 169-212 (350)
285 PF05148 Methyltransf_8: Hypot 85.1 1.2 2.5E-05 35.4 3.6 31 56-89 73-103 (219)
286 PF00145 DNA_methylase: C-5 cy 83.7 2.5 5.5E-05 34.3 5.2 41 58-99 2-42 (335)
287 KOG1596|consensus 83.6 0.85 1.8E-05 37.2 2.2 61 53-121 154-215 (317)
288 COG3510 CmcI Cephalosporin hyd 83.4 1.7 3.6E-05 34.3 3.7 55 56-121 70-128 (237)
289 COG1064 AdhP Zn-dependent alco 83.4 4 8.6E-05 34.6 6.3 45 53-98 164-209 (339)
290 COG1568 Predicted methyltransf 83.2 7.4 0.00016 32.5 7.5 64 56-126 153-216 (354)
291 PF07942 N2227: N2227-like pro 82.8 3 6.5E-05 34.2 5.2 41 56-98 57-97 (270)
292 COG5379 BtaA S-adenosylmethion 81.8 5.3 0.00011 33.6 6.2 47 55-103 63-109 (414)
293 PRK07102 short chain dehydroge 81.2 9.8 0.00021 29.5 7.5 59 57-122 2-62 (243)
294 PF01234 NNMT_PNMT_TEMT: NNMT/ 81.1 1.2 2.7E-05 36.2 2.3 45 56-101 57-101 (256)
295 PF12692 Methyltransf_17: S-ad 80.7 2.7 5.9E-05 31.6 3.8 32 57-88 30-61 (160)
296 PLN02668 indole-3-acetate carb 80.1 1.3 2.8E-05 38.2 2.3 20 56-75 64-83 (386)
297 KOG2352|consensus 79.8 0.87 1.9E-05 40.2 1.1 45 56-100 296-340 (482)
298 PRK07904 short chain dehydroge 79.7 11 0.00024 29.8 7.4 60 56-122 8-71 (253)
299 KOG1227|consensus 79.5 0.61 1.3E-05 39.0 0.1 45 56-101 195-240 (351)
300 KOG2811|consensus 78.7 4.3 9.3E-05 34.9 4.9 38 57-94 184-224 (420)
301 PF03721 UDPG_MGDP_dh_N: UDP-g 77.6 5.2 0.00011 30.7 4.8 40 58-97 2-41 (185)
302 PRK07326 short chain dehydroge 77.4 13 0.00029 28.4 7.2 57 56-121 6-64 (237)
303 KOG0022|consensus 77.3 6.6 0.00014 33.3 5.5 46 53-98 190-236 (375)
304 PRK07454 short chain dehydroge 77.0 20 0.00044 27.6 8.1 59 56-122 6-66 (241)
305 PF00107 ADH_zinc_N: Zinc-bind 76.9 4.9 0.00011 28.0 4.2 32 65-97 1-32 (130)
306 PRK03659 glutathione-regulated 76.7 4 8.8E-05 37.1 4.5 34 64-97 406-441 (601)
307 PRK10669 putative cation:proto 76.5 4.2 9E-05 36.5 4.5 51 57-122 418-470 (558)
308 PF10354 DUF2431: Domain of un 76.0 2.4 5.3E-05 32.1 2.5 76 62-144 3-87 (166)
309 PRK09496 trkA potassium transp 75.9 5.9 0.00013 34.1 5.1 40 57-98 232-273 (453)
310 KOG2360|consensus 75.8 3.8 8.2E-05 35.4 3.8 62 55-122 213-275 (413)
311 PRK06949 short chain dehydroge 75.7 21 0.00045 27.7 7.9 58 56-121 9-68 (258)
312 PRK06124 gluconate 5-dehydroge 75.6 21 0.00046 27.7 8.0 59 56-122 11-71 (256)
313 COG1062 AdhC Zn-dependent alco 75.4 9.3 0.0002 32.6 6.0 45 53-97 183-228 (366)
314 PRK05786 fabG 3-ketoacyl-(acyl 75.2 20 0.00043 27.4 7.6 58 56-122 5-64 (238)
315 KOG2793|consensus 75.1 7.1 0.00015 31.7 5.1 34 57-91 88-121 (248)
316 PRK08945 putative oxoacyl-(acy 75.1 18 0.00038 28.1 7.3 58 56-120 12-71 (247)
317 PRK08703 short chain dehydroge 74.2 17 0.00037 28.0 7.0 44 56-100 6-51 (239)
318 PRK12384 sorbitol-6-phosphate 73.7 25 0.00055 27.4 8.0 60 57-122 3-64 (259)
319 PF11899 DUF3419: Protein of u 73.6 12 0.00027 32.1 6.5 46 55-102 35-80 (380)
320 cd05188 MDR Medium chain reduc 73.4 12 0.00025 29.0 5.9 42 54-96 133-175 (271)
321 KOG2352|consensus 73.3 6.1 0.00013 35.0 4.6 41 58-99 51-91 (482)
322 PRK08251 short chain dehydroge 73.2 27 0.00059 26.9 8.0 60 57-122 3-64 (248)
323 cd08254 hydroxyacyl_CoA_DH 6-h 73.1 11 0.00025 30.4 6.0 43 54-97 164-207 (338)
324 TIGR00675 dcm DNA-methyltransf 73.0 7.3 0.00016 32.4 4.9 40 59-99 1-40 (315)
325 PRK06172 short chain dehydroge 72.8 26 0.00057 27.1 7.9 59 56-122 7-67 (253)
326 KOG3045|consensus 72.6 2 4.4E-05 35.4 1.4 16 56-71 181-196 (325)
327 PRK08339 short chain dehydroge 72.0 31 0.00067 27.3 8.2 60 56-122 8-69 (263)
328 PRK03562 glutathione-regulated 71.2 6.7 0.00015 35.8 4.6 39 57-97 401-441 (621)
329 PRK06125 short chain dehydroge 70.8 31 0.00068 26.9 7.9 59 56-121 7-67 (259)
330 PRK07576 short chain dehydroge 70.7 31 0.00067 27.2 7.9 58 56-121 9-68 (264)
331 COG4301 Uncharacterized conser 70.7 18 0.00039 29.8 6.4 46 56-101 79-128 (321)
332 PRK07063 short chain dehydroge 69.7 33 0.00072 26.7 7.8 61 56-122 7-69 (260)
333 PRK08213 gluconate 5-dehydroge 69.7 34 0.00074 26.7 7.9 59 56-122 12-72 (259)
334 PRK07814 short chain dehydroge 69.6 34 0.00074 26.9 7.9 59 56-122 10-70 (263)
335 PRK07062 short chain dehydroge 68.9 35 0.00077 26.7 7.8 61 56-122 8-70 (265)
336 PRK07666 fabG 3-ketoacyl-(acyl 68.7 38 0.00082 26.0 7.8 59 56-122 7-67 (239)
337 PRK07523 gluconate 5-dehydroge 68.6 35 0.00076 26.5 7.7 59 56-122 10-70 (255)
338 TIGR03201 dearomat_had 6-hydro 68.5 16 0.00035 30.2 6.0 43 54-97 165-208 (349)
339 COG0270 Dcm Site-specific DNA 68.2 15 0.00032 30.7 5.7 43 56-99 3-45 (328)
340 KOG1201|consensus 67.0 26 0.00057 29.2 6.8 57 56-122 38-97 (300)
341 PRK06914 short chain dehydroge 66.4 42 0.00091 26.5 7.9 61 56-122 3-65 (280)
342 PRK08217 fabG 3-ketoacyl-(acyl 65.8 48 0.001 25.4 7.9 58 56-121 5-64 (253)
343 PRK09242 tropinone reductase; 65.7 49 0.0011 25.7 8.0 61 56-122 9-71 (257)
344 PF07279 DUF1442: Protein of u 65.5 36 0.00078 27.1 7.0 65 56-126 42-112 (218)
345 PRK05854 short chain dehydroge 65.3 53 0.0011 26.8 8.4 61 56-122 14-76 (313)
346 PRK07774 short chain dehydroge 65.3 51 0.0011 25.4 8.0 59 56-122 6-66 (250)
347 PF03514 GRAS: GRAS domain fam 65.3 14 0.0003 31.7 5.0 48 55-102 110-168 (374)
348 PRK05875 short chain dehydroge 65.3 46 0.001 26.2 7.9 61 56-122 7-69 (276)
349 PRK08340 glucose-1-dehydrogena 64.9 35 0.00076 26.7 7.1 56 58-122 2-59 (259)
350 KOG3924|consensus 64.9 6.2 0.00013 34.2 2.8 48 53-100 190-237 (419)
351 TIGR03206 benzo_BadH 2-hydroxy 64.9 48 0.001 25.4 7.8 59 56-122 3-63 (250)
352 PLN02353 probable UDP-glucose 64.2 16 0.00034 32.4 5.3 41 57-97 2-44 (473)
353 PRK10458 DNA cytosine methylas 64.1 24 0.00053 31.2 6.4 43 56-99 88-130 (467)
354 PRK06181 short chain dehydroge 64.0 50 0.0011 25.7 7.8 58 57-122 2-61 (263)
355 PRK12826 3-ketoacyl-(acyl-carr 63.4 50 0.0011 25.3 7.6 59 56-122 6-66 (251)
356 PF07101 DUF1363: Protein of u 63.2 3.1 6.8E-05 28.9 0.6 19 59-77 6-24 (124)
357 PRK08643 acetoin reductase; Va 63.1 51 0.0011 25.6 7.7 58 57-122 3-62 (256)
358 KOG2782|consensus 62.7 9.4 0.0002 30.8 3.3 47 55-101 43-89 (303)
359 PRK07533 enoyl-(acyl carrier p 62.3 43 0.00093 26.3 7.2 36 56-91 10-48 (258)
360 PRK07677 short chain dehydroge 62.3 57 0.0012 25.3 7.8 57 57-121 2-60 (252)
361 PRK05599 hypothetical protein; 62.1 54 0.0012 25.6 7.6 58 58-122 2-60 (246)
362 PRK09186 flagellin modificatio 61.3 57 0.0012 25.2 7.6 61 56-122 4-66 (256)
363 COG1748 LYS9 Saccharopine dehy 61.0 35 0.00076 29.6 6.7 55 57-123 2-59 (389)
364 PRK05867 short chain dehydroge 60.8 60 0.0013 25.2 7.7 59 56-122 9-69 (253)
365 PF03492 Methyltransf_7: SAM d 60.5 7.7 0.00017 32.7 2.6 21 56-76 17-37 (334)
366 PRK08293 3-hydroxybutyryl-CoA 60.2 34 0.00074 27.7 6.3 45 57-101 4-48 (287)
367 PRK06197 short chain dehydroge 59.9 65 0.0014 26.0 8.0 61 56-122 16-78 (306)
368 TIGR03451 mycoS_dep_FDH mycoth 59.7 30 0.00066 28.7 6.1 44 54-97 175-219 (358)
369 PRK06113 7-alpha-hydroxysteroi 59.7 69 0.0015 24.9 7.9 59 56-122 11-71 (255)
370 PRK09135 pteridine reductase; 59.7 69 0.0015 24.4 7.8 60 56-122 6-68 (249)
371 PLN02780 ketoreductase/ oxidor 59.0 59 0.0013 26.8 7.6 60 56-121 53-114 (320)
372 TIGR02818 adh_III_F_hyde S-(hy 59.0 32 0.00069 28.8 6.1 44 54-97 184-228 (368)
373 PRK09880 L-idonate 5-dehydroge 58.7 31 0.00068 28.4 6.0 43 55-97 169-212 (343)
374 PLN02253 xanthoxin dehydrogena 58.6 42 0.00092 26.5 6.6 58 56-122 18-77 (280)
375 TIGR01500 sepiapter_red sepiap 58.4 54 0.0012 25.6 7.1 59 58-122 2-66 (256)
376 PRK01747 mnmC bifunctional tRN 58.4 13 0.00028 34.1 3.8 34 56-89 58-103 (662)
377 PRK06194 hypothetical protein; 58.2 71 0.0015 25.2 7.8 59 56-122 6-66 (287)
378 KOG0821|consensus 58.1 18 0.00039 29.3 4.1 60 56-123 51-110 (326)
379 COG1255 Uncharacterized protei 57.6 17 0.00036 26.3 3.5 33 56-90 14-47 (129)
380 PRK12939 short chain dehydroge 57.5 83 0.0018 24.0 7.9 59 56-122 7-67 (250)
381 PRK07890 short chain dehydroge 57.2 76 0.0016 24.5 7.7 59 56-122 5-65 (258)
382 PRK05650 short chain dehydroge 57.1 71 0.0015 25.1 7.6 57 58-122 2-60 (270)
383 PRK09496 trkA potassium transp 57.0 25 0.00055 30.1 5.3 38 58-97 2-41 (453)
384 PLN02740 Alcohol dehydrogenase 56.0 34 0.00074 28.8 5.8 44 54-97 197-241 (381)
385 KOG3201|consensus 55.9 5.7 0.00012 30.6 0.9 44 56-99 30-74 (201)
386 PRK07024 short chain dehydroge 55.9 48 0.001 25.9 6.4 57 57-122 3-61 (257)
387 cd08255 2-desacetyl-2-hydroxye 55.8 38 0.00082 26.6 5.8 43 54-97 96-140 (277)
388 PF02737 3HCDH_N: 3-hydroxyacy 55.8 41 0.00089 25.5 5.8 43 59-101 2-44 (180)
389 TIGR02822 adh_fam_2 zinc-bindi 55.7 40 0.00087 27.7 6.1 43 54-97 164-207 (329)
390 COG5459 Predicted rRNA methyla 55.6 9.7 0.00021 32.9 2.4 39 56-94 114-153 (484)
391 PRK13394 3-hydroxybutyrate deh 55.2 79 0.0017 24.4 7.5 59 56-122 7-67 (262)
392 PF14737 DUF4470: Domain of un 54.9 37 0.0008 23.1 4.9 39 56-94 24-68 (100)
393 PF03686 UPF0146: Uncharacteri 54.8 26 0.00056 25.6 4.2 33 56-90 14-47 (127)
394 cd08232 idonate-5-DH L-idonate 54.5 37 0.0008 27.6 5.7 42 55-96 165-207 (339)
395 PRK08267 short chain dehydroge 54.0 73 0.0016 24.8 7.1 55 58-122 3-59 (260)
396 PRK09424 pntA NAD(P) transhydr 53.8 35 0.00077 30.6 5.7 42 55-97 164-206 (509)
397 cd08245 CAD Cinnamyl alcohol d 53.7 47 0.001 26.8 6.2 42 54-96 161-203 (330)
398 PRK07109 short chain dehydroge 53.3 98 0.0021 25.6 8.1 59 56-122 8-68 (334)
399 KOG2666|consensus 53.0 14 0.00031 31.5 2.9 36 58-93 3-40 (481)
400 PRK05876 short chain dehydroge 52.7 1E+02 0.0022 24.6 7.9 59 56-122 6-66 (275)
401 PRK12429 3-hydroxybutyrate deh 52.7 60 0.0013 25.0 6.4 58 56-121 4-63 (258)
402 PLN03209 translocon at the inn 52.6 1.2E+02 0.0027 27.7 9.0 68 54-122 78-149 (576)
403 TIGR01963 PHB_DH 3-hydroxybuty 52.6 95 0.0021 23.8 7.5 57 58-122 3-61 (255)
404 PRK07035 short chain dehydroge 52.5 1.1E+02 0.0023 23.7 8.0 59 56-122 8-68 (252)
405 cd05278 FDH_like Formaldehyde 52.4 50 0.0011 26.8 6.2 43 54-96 166-209 (347)
406 PRK08862 short chain dehydroge 52.3 99 0.0021 23.9 7.6 58 56-121 5-64 (227)
407 PRK12829 short chain dehydroge 51.9 70 0.0015 24.8 6.7 56 56-121 11-68 (264)
408 COG1004 Ugd Predicted UDP-gluc 51.8 30 0.00066 30.1 4.8 41 58-98 2-42 (414)
409 PRK06200 2,3-dihydroxy-2,3-dih 51.8 82 0.0018 24.6 7.1 56 56-122 6-63 (263)
410 PRK09072 short chain dehydroge 51.8 82 0.0018 24.6 7.1 58 56-122 5-64 (263)
411 COG0569 TrkA K+ transport syst 51.6 27 0.0006 27.5 4.3 35 59-95 3-39 (225)
412 PRK09273 hypothetical protein; 51.4 91 0.002 24.7 7.1 39 58-97 65-103 (211)
413 PRK06138 short chain dehydroge 51.3 77 0.0017 24.3 6.8 58 56-122 5-64 (252)
414 PRK06196 oxidoreductase; Provi 51.3 70 0.0015 26.0 6.8 40 56-96 26-67 (315)
415 cd08281 liver_ADH_like1 Zinc-d 51.1 48 0.001 27.7 6.0 44 54-97 190-234 (371)
416 PRK09291 short chain dehydroge 50.8 1.1E+02 0.0023 23.6 7.6 57 57-121 3-61 (257)
417 PLN02827 Alcohol dehydrogenase 50.5 50 0.0011 27.8 6.0 43 54-96 192-235 (378)
418 PTZ00357 methyltransferase; Pr 50.2 45 0.00097 31.6 5.8 64 57-123 702-775 (1072)
419 PRK07478 short chain dehydroge 50.1 1.2E+02 0.0026 23.5 7.9 59 56-122 6-66 (254)
420 TIGR00497 hsdM type I restrict 49.9 28 0.0006 30.9 4.5 45 56-100 218-266 (501)
421 PRK07831 short chain dehydroge 49.5 1.2E+02 0.0027 23.5 8.1 61 56-122 17-80 (262)
422 PRK08265 short chain dehydroge 49.3 95 0.0021 24.3 7.2 56 56-122 6-63 (261)
423 PRK08303 short chain dehydroge 48.9 96 0.0021 25.3 7.3 32 56-88 8-41 (305)
424 PRK07453 protochlorophyllide o 48.9 1E+02 0.0022 25.0 7.5 58 56-121 6-65 (322)
425 cd08237 ribitol-5-phosphate_DH 48.7 54 0.0012 27.1 5.9 44 54-97 162-207 (341)
426 PRK08085 gluconate 5-dehydroge 48.6 1.2E+02 0.0027 23.4 7.6 58 56-121 9-68 (254)
427 PRK05866 short chain dehydroge 48.4 1.3E+02 0.0029 24.2 8.0 59 56-122 40-100 (293)
428 PRK07067 sorbitol dehydrogenas 48.4 1E+02 0.0022 23.9 7.1 55 56-121 6-62 (257)
429 PRK07097 gluconate 5-dehydroge 48.1 1.3E+02 0.0029 23.4 8.0 59 56-122 10-70 (265)
430 cd08261 Zn_ADH7 Alcohol dehydr 47.8 59 0.0013 26.4 5.9 42 54-96 158-200 (337)
431 PRK14045 1-aminocyclopropane-1 47.8 18 0.00039 30.2 2.8 32 58-89 186-221 (329)
432 PF04072 LCM: Leucine carboxyl 47.2 79 0.0017 23.8 6.1 61 57-121 80-140 (183)
433 TIGR01202 bchC 2-desacetyl-2-h 46.6 47 0.001 27.0 5.1 41 56-96 145-186 (308)
434 KOG1269|consensus 46.4 28 0.00062 29.8 3.8 44 56-99 181-224 (364)
435 cd08285 NADP_ADH NADP(H)-depen 46.1 72 0.0016 26.2 6.2 44 54-97 165-209 (351)
436 PF13561 adh_short_C2: Enoyl-( 45.9 87 0.0019 24.1 6.4 51 63-121 1-54 (241)
437 PRK06940 short chain dehydroge 45.8 1.5E+02 0.0032 23.6 7.8 57 57-122 3-60 (275)
438 PLN02989 cinnamyl-alcohol dehy 45.5 84 0.0018 25.4 6.5 61 56-122 5-67 (325)
439 PRK08226 short chain dehydroge 45.1 1.3E+02 0.0027 23.4 7.2 58 56-122 6-65 (263)
440 KOG1253|consensus 44.3 10 0.00023 33.8 0.9 64 54-122 108-172 (525)
441 KOG2671|consensus 44.2 15 0.00032 31.6 1.7 40 53-94 206-245 (421)
442 PRK08589 short chain dehydroge 44.2 1.6E+02 0.0034 23.2 7.8 58 56-122 6-65 (272)
443 TIGR03366 HpnZ_proposed putati 44.0 65 0.0014 25.7 5.5 43 55-97 120-163 (280)
444 TIGR02415 23BDH acetoin reduct 43.8 1.5E+02 0.0032 22.8 7.6 56 58-121 2-59 (254)
445 PRK07819 3-hydroxybutyryl-CoA 43.7 95 0.0021 25.3 6.5 44 57-102 6-51 (286)
446 cd08234 threonine_DH_like L-th 43.4 79 0.0017 25.5 6.0 42 54-96 158-201 (334)
447 TIGR02622 CDP_4_6_dhtase CDP-g 43.3 75 0.0016 26.2 5.9 35 56-91 4-40 (349)
448 cd00401 AdoHcyase S-adenosyl-L 43.0 65 0.0014 28.1 5.6 42 55-97 201-243 (413)
449 cd08230 glucose_DH Glucose deh 42.9 80 0.0017 26.0 6.0 41 55-96 172-216 (355)
450 COG0677 WecC UDP-N-acetyl-D-ma 42.8 51 0.0011 28.9 4.8 41 57-97 10-50 (436)
451 PRK08594 enoyl-(acyl carrier p 42.6 1.1E+02 0.0023 24.1 6.5 33 56-88 7-42 (257)
452 PF00106 adh_short: short chai 42.5 1.2E+02 0.0027 21.5 7.0 57 58-122 2-63 (167)
453 PRK05653 fabG 3-ketoacyl-(acyl 42.3 1.5E+02 0.0032 22.4 7.7 58 56-121 5-64 (246)
454 PRK05872 short chain dehydroge 42.1 1.7E+02 0.0037 23.5 7.7 42 56-98 9-52 (296)
455 PRK06035 3-hydroxyacyl-CoA deh 41.8 93 0.002 25.2 6.1 42 57-100 4-47 (291)
456 PRK07806 short chain dehydroge 41.6 1.6E+02 0.0034 22.5 7.5 59 56-122 6-67 (248)
457 PRK05855 short chain dehydroge 41.0 1.7E+02 0.0036 25.6 8.0 59 56-122 315-375 (582)
458 PRK05993 short chain dehydroge 40.9 1.1E+02 0.0024 24.2 6.4 37 56-93 4-42 (277)
459 PF02153 PDH: Prephenate dehyd 40.5 53 0.0012 26.3 4.4 29 69-97 1-29 (258)
460 cd08278 benzyl_alcohol_DH Benz 40.4 1E+02 0.0022 25.6 6.3 42 55-96 186-228 (365)
461 KOG1252|consensus 40.4 43 0.00094 28.6 3.9 38 56-93 212-253 (362)
462 PRK08277 D-mannonate oxidoredu 40.3 1.8E+02 0.0039 22.8 7.9 59 56-122 10-70 (278)
463 PRK06130 3-hydroxybutyryl-CoA 40.2 1E+02 0.0022 25.1 6.2 43 57-99 5-47 (311)
464 PLN03154 putative allyl alcoho 40.2 83 0.0018 26.1 5.7 42 54-96 157-200 (348)
465 PRK06198 short chain dehydroge 40.1 1.6E+02 0.0035 22.7 7.1 58 56-121 6-66 (260)
466 PRK07832 short chain dehydroge 40.0 1E+02 0.0022 24.2 6.0 41 59-100 3-45 (272)
467 PRK06139 short chain dehydroge 40.0 1.9E+02 0.0041 24.0 7.8 58 56-121 7-66 (330)
468 PRK06180 short chain dehydroge 39.9 1.6E+02 0.0035 23.2 7.2 37 56-93 4-42 (277)
469 KOG0822|consensus 39.8 1.6E+02 0.0034 27.0 7.4 62 56-123 368-433 (649)
470 TIGR03325 BphB_TodD cis-2,3-di 39.6 1.7E+02 0.0036 22.8 7.2 56 56-122 5-62 (262)
471 PRK06101 short chain dehydroge 39.3 80 0.0017 24.3 5.2 53 58-122 3-57 (240)
472 cd08301 alcohol_DH_plants Plan 38.7 1E+02 0.0022 25.6 6.0 44 54-97 186-230 (369)
473 PRK12823 benD 1,6-dihydroxycyc 38.5 1.5E+02 0.0033 22.8 6.8 58 56-122 8-67 (260)
474 cd08241 QOR1 Quinone oxidoredu 38.5 1E+02 0.0022 24.2 5.8 41 55-96 139-181 (323)
475 PRK12828 short chain dehydroge 38.4 1.5E+02 0.0032 22.4 6.5 38 56-94 7-46 (239)
476 PRK07530 3-hydroxybutyryl-CoA 38.4 1.2E+02 0.0026 24.5 6.3 44 57-100 5-48 (292)
477 PRK05808 3-hydroxybutyryl-CoA 38.2 1.1E+02 0.0025 24.5 6.1 42 58-101 5-48 (282)
478 PRK05565 fabG 3-ketoacyl-(acyl 38.1 1.8E+02 0.0038 22.1 7.5 58 57-122 6-66 (247)
479 TIGR02356 adenyl_thiF thiazole 38.0 1.8E+02 0.004 22.3 7.0 32 56-88 21-54 (202)
480 cd01075 NAD_bind_Leu_Phe_Val_D 37.7 1.2E+02 0.0026 23.4 5.9 41 56-98 28-70 (200)
481 PLN02896 cinnamyl-alcohol dehy 37.4 1.4E+02 0.0031 24.5 6.7 35 56-91 10-46 (353)
482 PRK06114 short chain dehydroge 37.4 1.9E+02 0.0042 22.3 7.7 58 56-121 8-68 (254)
483 PRK15182 Vi polysaccharide bio 37.0 47 0.001 28.9 3.8 39 57-96 7-45 (425)
484 PRK11064 wecC UDP-N-acetyl-D-m 37.0 86 0.0019 27.1 5.4 39 57-95 4-42 (415)
485 KOG2918|consensus 36.9 56 0.0012 27.6 4.0 41 55-95 87-129 (335)
486 PRK12745 3-ketoacyl-(acyl-carr 36.8 1.9E+02 0.0042 22.1 7.6 58 57-122 3-63 (256)
487 PRK06182 short chain dehydroge 36.8 1.3E+02 0.0029 23.5 6.2 37 56-93 3-41 (273)
488 PRK08690 enoyl-(acyl carrier p 36.7 1.6E+02 0.0034 23.2 6.6 34 56-89 6-42 (261)
489 PRK08263 short chain dehydroge 36.5 2.1E+02 0.0045 22.5 7.3 38 57-95 4-43 (275)
490 PRK08628 short chain dehydroge 36.5 1.9E+02 0.0041 22.3 7.0 58 56-122 7-66 (258)
491 PRK08324 short chain dehydroge 35.9 1.6E+02 0.0034 27.2 7.2 57 56-121 422-480 (681)
492 PRK07231 fabG 3-ketoacyl-(acyl 35.8 2E+02 0.0042 21.9 7.2 58 56-122 5-64 (251)
493 PRK10538 malonic semialdehyde 35.8 1.2E+02 0.0026 23.4 5.8 53 59-122 3-57 (248)
494 PRK06482 short chain dehydroge 35.5 2.2E+02 0.0047 22.3 7.3 55 57-122 3-59 (276)
495 KOG1371|consensus 35.4 1.4E+02 0.003 25.5 6.1 61 57-122 3-65 (343)
496 KOG1562|consensus 35.2 76 0.0016 26.8 4.5 67 56-125 122-189 (337)
497 PRK06179 short chain dehydroge 35.1 1.1E+02 0.0024 23.9 5.5 34 56-90 4-39 (270)
498 cd05285 sorbitol_DH Sorbitol d 35.1 1.3E+02 0.0027 24.6 6.0 43 54-96 161-204 (343)
499 cd08236 sugar_DH NAD(P)-depend 35.0 1.3E+02 0.0029 24.3 6.1 40 55-95 159-200 (343)
500 cd08295 double_bond_reductase_ 34.9 1.2E+02 0.0026 24.7 5.8 43 54-97 150-194 (338)
No 1
>KOG3115|consensus
Probab=99.95 E-value=3.9e-29 Score=192.76 Aligned_cols=135 Identities=61% Similarity=1.084 Sum_probs=122.1
Q ss_pred cCCccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECC
Q psy13087 9 QLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR 88 (170)
Q Consensus 9 ~~~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis 88 (170)
.+|+|+|||||+|+||+++|.+.||.+|+.+||+.+|+..... +.+...+.|||||+|.+++.++..+|+..++|+||.
T Consensus 15 ~~pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~-~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR 93 (249)
T KOG3115|consen 15 GLPQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRA-LNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIR 93 (249)
T ss_pred CCcHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhh-ccccceEEeeccCccchhhhccccCccceeeeehhh
Confidence 3599999999999999999999999999999999999876432 234578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc-CCCCCCCeEEEEcchhhhccCCCchhhhhhhHhhhcCCc
Q psy13087 89 VKVSDYVIDRVAALRSQ-NKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNS 144 (170)
Q Consensus 89 ~~~i~~a~~~~~~~~~~-~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~~~~~g 144 (170)
.+.-++.+++++++|.. ..+.+.|+.+++.|++.+++|+|.+++++++|+.++.|.
T Consensus 94 ~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpH 150 (249)
T KOG3115|consen 94 DKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPH 150 (249)
T ss_pred HHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChh
Confidence 99999999999998754 344578999999999999999999999999999988874
No 2
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.73 E-value=2.2e-18 Score=137.03 Aligned_cols=122 Identities=21% Similarity=0.353 Sum_probs=99.9
Q ss_pred CccchhhhcccCCCCcCCCCCCCCCCC--CCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECC
Q psy13087 11 PQKRYYRQRAHSNPIADHSVEYPPSPN--DMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR 88 (170)
Q Consensus 11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~--~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis 88 (170)
.++++...+.+.+++..+...++.++. ..+|...|.... .+.+||||||.|.+++.+|..+|+.+++|||+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~------~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~ 81 (227)
T COG0220 8 VRRRLRLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNNN------APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIR 81 (227)
T ss_pred hhhhccccHHHHHHHHhcccccCCChhhccchHHHHhCCCC------CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEe
Confidence 344455555555555443333444332 357888888753 479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhhhcCCc
Q psy13087 89 VKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNS 144 (170)
Q Consensus 89 ~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~~~~~g 144 (170)
...+..|.+++.+. +++||++++.|+...+++++++++|++||+++|+|+
T Consensus 82 ~~~v~~~l~k~~~~------~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPW 131 (227)
T COG0220 82 VPGVAKALKKIKEL------GLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPW 131 (227)
T ss_pred hHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCC
Confidence 99999999999987 677999999999999999999999999999999997
No 3
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.71 E-value=6.1e-18 Score=131.86 Aligned_cols=95 Identities=23% Similarity=0.438 Sum_probs=82.0
Q ss_pred CCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy13087 37 NDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACI 116 (170)
Q Consensus 37 ~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i 116 (170)
+..+|...|+... +.+||||||.|.+++.+|..+|+.+++|||++...+..|.+++... +++|+.++
T Consensus 6 ~~~~~~~~f~~~~-------~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~------~l~Nv~~~ 72 (195)
T PF02390_consen 6 EPLDWQEIFGNDN-------PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR------GLKNVRFL 72 (195)
T ss_dssp CTTCHHHHHTSCC-------EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH------TTSSEEEE
T ss_pred CccCHHHHcCCCC-------CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh------cccceEEE
Confidence 3478999998763 6999999999999999999999999999999999999999999887 78999999
Q ss_pred EcchhhhccCCCchhhhhhhHhhhcCCc
Q psy13087 117 RTNAMKYLPNYFRKAQVRRCFANCILNS 144 (170)
Q Consensus 117 ~~d~~~~l~~~f~~~~l~~i~~~~~~~g 144 (170)
++|+...+.+++++++++.+++++|.|.
T Consensus 73 ~~da~~~l~~~~~~~~v~~i~i~FPDPW 100 (195)
T PF02390_consen 73 RGDARELLRRLFPPGSVDRIYINFPDPW 100 (195)
T ss_dssp ES-CTTHHHHHSTTTSEEEEEEES----
T ss_pred EccHHHHHhhcccCCchheEEEeCCCCC
Confidence 9999999999999999999999999995
No 4
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.63 E-value=4.7e-16 Score=120.80 Aligned_cols=93 Identities=19% Similarity=0.384 Sum_probs=79.1
Q ss_pred CCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy13087 39 MDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118 (170)
Q Consensus 39 ~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~ 118 (170)
.+|...|+.. .++|||||||+|.++..+|..+|+.+|+|||+++++++.|++++... +++|++++++
T Consensus 7 ~~~~~~f~~~-------~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~------~l~ni~~i~~ 73 (194)
T TIGR00091 7 PDFATVFGNK-------APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL------GLKNLHVLCG 73 (194)
T ss_pred CCHHHHhCCC-------CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh------CCCCEEEEcc
Confidence 4687777743 47999999999999999999999999999999999999999998775 6679999999
Q ss_pred chhhhccCCCchhhhhhhHhhhcCCc
Q psy13087 119 NAMKYLPNYFRKAQVRRCFANCILNS 144 (170)
Q Consensus 119 d~~~~l~~~f~~~~l~~i~~~~~~~g 144 (170)
|+.+.+..+++.++++.++++++.|.
T Consensus 74 d~~~~~~~~~~~~~~d~v~~~~pdpw 99 (194)
T TIGR00091 74 DANELLDKFFPDGSLSKVFLNFPDPW 99 (194)
T ss_pred CHHHHHHhhCCCCceeEEEEECCCcC
Confidence 99887666666678888888776653
No 5
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.53 E-value=2e-14 Score=122.14 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=74.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
++.+||||||+|.++..+|..+|+.+++|||+++.++..|.+++... +++||+++++|+...+ ..+++++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~------gL~NV~~i~~DA~~ll-~~~~~~s~D~ 195 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL------NLKNLLIINYDARLLL-ELLPSNSVEK 195 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHhh-hhCCCCceeE
Confidence 57999999999999999999999999999999999999999998775 6789999999998755 4678899999
Q ss_pred hHhhhcCCc
Q psy13087 136 CFANCILNS 144 (170)
Q Consensus 136 i~~~~~~~g 144 (170)
|+.+++.|+
T Consensus 196 I~lnFPdPW 204 (390)
T PRK14121 196 IFVHFPVPW 204 (390)
T ss_pred EEEeCCCCc
Confidence 999988875
No 6
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.51 E-value=3.4e-14 Score=111.08 Aligned_cols=95 Identities=19% Similarity=0.381 Sum_probs=75.3
Q ss_pred CCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy13087 36 PNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIAC 115 (170)
Q Consensus 36 ~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~ 115 (170)
+....|...+... +.+|||||||+|.++..++..+|+.+|+|||+|+++++.|+++++.. +.+|+.+
T Consensus 28 ~~~~~~~~~~~~~-------~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~------~~~~v~~ 94 (202)
T PRK00121 28 PAPLDWAELFGND-------APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE------GLTNLRL 94 (202)
T ss_pred CCCCCHHHHcCCC-------CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc------CCCCEEE
Confidence 4456788877763 47999999999999999999988889999999999999999998764 5678999
Q ss_pred EEcchhhhccCCCchhhhhhhHhhhcCC
Q psy13087 116 IRTNAMKYLPNYFRKAQVRRCFANCILN 143 (170)
Q Consensus 116 i~~d~~~~l~~~f~~~~l~~i~~~~~~~ 143 (170)
+++|+...++..++++.++.++.+++.|
T Consensus 95 ~~~d~~~~l~~~~~~~~~D~V~~~~~~p 122 (202)
T PRK00121 95 LCGDAVEVLLDMFPDGSLDRIYLNFPDP 122 (202)
T ss_pred EecCHHHHHHHHcCccccceEEEECCCC
Confidence 9999944444445566666666655443
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.49 E-value=2e-13 Score=95.92 Aligned_cols=60 Identities=27% Similarity=0.569 Sum_probs=54.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~ 120 (170)
+.+|||||||+|.+++.+++.+++.+++|||+|+++++.|++++.+. +..+||+++++|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-----GLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-----TTTTTEEEEESCC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECcc
Confidence 67999999999999999999888999999999999999999998553 3458999999999
No 8
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=1.5e-13 Score=112.12 Aligned_cols=110 Identities=17% Similarity=0.354 Sum_probs=81.1
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhccCC----
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLPNY---- 127 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~~~---- 127 (170)
++++++|||||||+|.+++.+|+.+ +++|+|+++|+++.+.+++++++. ++. ||+++..|..++-+.+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~------gl~~~v~v~l~d~rd~~e~fDrIv 142 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR------GLEDNVEVRLQDYRDFEEPFDRIV 142 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc------CCCcccEEEeccccccccccceee
Confidence 6779999999999999999999998 789999999999999999999886 444 8999888876654321
Q ss_pred -------Cch----hhhhhhHhhhcCCccccchhhhcc------cccccChhhhhhcccC
Q psy13087 128 -------FRK----AQVRRCFANCILNSQYENIACIRT------NAMKYLPNYFRKAQAL 170 (170)
Q Consensus 128 -------f~~----~~l~~i~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~ 170 (170)
|.. .-+.+++. +++|||..-+..|.. +...+...+++||+.|
T Consensus 143 SvgmfEhvg~~~~~~ff~~~~~-~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~l 201 (283)
T COG2230 143 SVGMFEHVGKENYDDFFKKVYA-LLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGEL 201 (283)
T ss_pred ehhhHHHhCcccHHHHHHHHHh-hcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcC
Confidence 333 23444444 566676544433333 3456677777777653
No 9
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.46 E-value=2.4e-13 Score=101.24 Aligned_cols=76 Identities=26% Similarity=0.541 Sum_probs=61.2
Q ss_pred CCCeEEEEcCccchHHHHHh-hhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLS-PMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQV 133 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la-~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l 133 (170)
++.+|||+|||+|.++..++ ..+|..+++|+|+|++|++.|+++++.. +++|++++++|+.+ ++..++ +.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------~~~ni~~~~~d~~~-l~~~~~-~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------GLDNIEFIQGDIED-LPQELE-EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT------TSTTEEEEESBTTC-GCGCSS-TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc------cccccceEEeehhc-cccccC-CCe
Confidence 46899999999999999999 5677889999999999999999998876 67799999999998 542122 444
Q ss_pred hhhHh
Q psy13087 134 RRCFA 138 (170)
Q Consensus 134 ~~i~~ 138 (170)
|.++.
T Consensus 75 D~I~~ 79 (152)
T PF13847_consen 75 DIIIS 79 (152)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 44443
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=2.5e-13 Score=108.69 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=56.6
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|||||||||.+++.+++..+..+|+|+|+|+.|++.|+++.... +..+++++++||+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~------~~~~i~fv~~dAe~ 112 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK------GVQNVEFVVGDAEN 112 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc------CccceEEEEechhh
Confidence 378999999999999999999998889999999999999999998775 44569999999986
No 11
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.38 E-value=6.9e-13 Score=116.69 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=74.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
++.+||||||.|.+++.+|..+|+.+++|||++...+..|.+++... ++.|+.++..|+. .+.++|+++++++
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~------~l~N~~~~~~~~~-~~~~~~~~~sv~~ 420 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ------NITNFLLFPNNLD-LILNDLPNNSLDG 420 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc------CCCeEEEEcCCHH-HHHHhcCcccccE
Confidence 58999999999999999999999999999999999999999888765 6889999888765 4667799999999
Q ss_pred hHhhhcCCc
Q psy13087 136 CFANCILNS 144 (170)
Q Consensus 136 i~~~~~~~g 144 (170)
+|+++|.|+
T Consensus 421 i~i~FPDPW 429 (506)
T PRK01544 421 IYILFPDPW 429 (506)
T ss_pred EEEECCCCC
Confidence 999999997
No 12
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.34 E-value=7.3e-12 Score=97.14 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=56.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++.+|||+|||+|.++..+++..++..|+|+|+++++++.|++++++. +.++++++.+|+.+.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~------~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF------GVKNVEVIEGSAPEC 102 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCeEEEECchHHH
Confidence 367999999999999999998888889999999999999999999875 567899999998653
No 13
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.32 E-value=4.8e-12 Score=97.53 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=56.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.+++.+|...|+.+|+|||+|+.|++.+++++++. +.+|++++++|+.+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~------~~~~i~~i~~d~~~~ 104 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL------GLNNVEIVNGRAEDF 104 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh------CCCCeEEEecchhhc
Confidence 57999999999999999998888889999999999999999998775 567899999999874
No 14
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.32 E-value=6.2e-12 Score=97.48 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=56.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.+++.+|...|+.+|+|+|++++|++.|+++++.. ++++++++++|+.+.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~------~l~~i~~~~~d~~~~ 107 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL------GLKNVTVVHGRAEEF 107 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc------CCCCEEEEeccHhhC
Confidence 57999999999999999999888899999999999999999998886 567899999998874
No 15
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.31 E-value=7.4e-12 Score=96.31 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=62.6
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY 127 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~ 127 (170)
++.+++|||||+|.+++++|..+|..++++||.++++++..++|+++. +.+|+.++.+++.+.|++.
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF------GVDNLEVVEGDAPEALPDL 100 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEeccchHhhcCC
Confidence 478999999999999999999999999999999999999999999998 5899999999999988754
No 16
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.31 E-value=2.9e-12 Score=97.52 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=62.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
..+|||+|||+|.+++.+++..|..+|+++|+++.+++.|+++++.. ..++++++.+|..+.++ ++.+|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n------~~~~v~~~~~d~~~~~~----~~~fD~ 101 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN------GLENVEVVQSDLFEALP----DGKFDL 101 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT------TCTTEEEEESSTTTTCC----TTCEEE
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc------Ccccccccccccccccc----ccceeE
Confidence 57999999999999999999999889999999999999999999875 66669999999876553 445555
Q ss_pred hHhh
Q psy13087 136 CFAN 139 (170)
Q Consensus 136 i~~~ 139 (170)
|+.|
T Consensus 102 Iv~N 105 (170)
T PF05175_consen 102 IVSN 105 (170)
T ss_dssp EEE-
T ss_pred EEEc
Confidence 5554
No 17
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4e-12 Score=104.22 Aligned_cols=100 Identities=10% Similarity=0.125 Sum_probs=73.0
Q ss_pred CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087 11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK 90 (170)
Q Consensus 11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~ 90 (170)
+.++|+..+..+++... ++.|.+....++........ ..+|||||||+|.+++.+|...|+.+|+|+|+|++
T Consensus 74 g~~~f~gl~~~v~~~vl--iPr~dTe~Lve~~l~~~~~~------~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~ 145 (280)
T COG2890 74 GSAEFGGLRFKVDEGVL--IPRPDTELLVEAALALLLQL------DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPD 145 (280)
T ss_pred ccCeecceeeeeCCCce--ecCCchHHHHHHHHHhhhhc------CCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHH
Confidence 55778888888877542 35555543333322111111 12799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 91 ~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+++.|++|++.+ ++.++.++++|....+
T Consensus 146 Al~~A~~Na~~~------~l~~~~~~~~dlf~~~ 173 (280)
T COG2890 146 ALALARENAERN------GLVRVLVVQSDLFEPL 173 (280)
T ss_pred HHHHHHHHHHHc------CCccEEEEeeeccccc
Confidence 999999999886 4467777777766543
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.26 E-value=1.6e-11 Score=100.40 Aligned_cols=65 Identities=17% Similarity=0.432 Sum_probs=49.8
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++++.+|||||||+|.+++.+|+.+ +++|+||.+|++.++.|++++++. +..+++.+..+|..+.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-----gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-----GLEDRVEVRLQDYRDL 124 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-----TSSSTEEEEES-GGG-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEeecccc
Confidence 4568999999999999999999998 689999999999999999999876 3334688888887764
No 19
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.6e-11 Score=94.46 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=70.6
Q ss_pred hcccCCCCcCCCCCCCCCCCCC---Cccc-cCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHH
Q psy13087 18 QRAHSNPIADHSVEYPPSPNDM---DWSP-LYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSD 93 (170)
Q Consensus 18 ~r~~~~p~~~~~~~~p~~~~~~---~w~~-~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~ 93 (170)
.+.+.||... ..||++.+... -|.. ..+.+. +..|+|+|||||.+++.++...+ ..|+|||+++++++
T Consensus 11 l~~f~~p~~~-LEQY~Tp~~~Aa~il~~a~~~g~l~------g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~e 82 (198)
T COG2263 11 LKGFPNPKLG-LEQYRTPAPLAAYILWVAYLRGDLE------GKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALE 82 (198)
T ss_pred hcCCCCCCcc-ceecCCChHHHHHHHHHHHHcCCcC------CCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHH
Confidence 3456666643 23888877643 3433 334442 67899999999999999998765 59999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 94 YVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
.+++|+.++ ..+|.|+.+|+.++-
T Consensus 83 i~r~N~~~l-------~g~v~f~~~dv~~~~ 106 (198)
T COG2263 83 IARANAEEL-------LGDVEFVVADVSDFR 106 (198)
T ss_pred HHHHHHHhh-------CCceEEEEcchhhcC
Confidence 999999874 468999999998754
No 20
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.25 E-value=1.6e-11 Score=98.17 Aligned_cols=63 Identities=19% Similarity=0.354 Sum_probs=47.7
Q ss_pred CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++.+|||+|||||.++..+++.. |+..|+|+|+|+.|++.|++++... +..||.++++|+.+.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------~~~~i~~v~~da~~l 110 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------GLQNIEFVQGDAEDL 110 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT------T--SEEEEE-BTTB-
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh------CCCCeeEEEcCHHHh
Confidence 46899999999999999999875 5679999999999999999999875 556999999999863
No 21
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.22 E-value=6.6e-12 Score=98.63 Aligned_cols=108 Identities=17% Similarity=0.253 Sum_probs=89.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCc---hh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR---KA 131 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~---~~ 131 (170)
..+||||||++|..++++|...| +.+++.+|++++..+.|+++++.. +..++|+++.+|+.+.++.+.. .+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-----g~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-----GLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-----TGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-----CCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 47999999999999999999876 579999999999999999999876 2235799999999998875543 34
Q ss_pred hhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087 132 QVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA 169 (170)
Q Consensus 132 ~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~ 169 (170)
.+|.||+-.. ++.|.. +.+++.+++...+|.+.+|.|
T Consensus 121 ~fD~VFiDa~-K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V 162 (205)
T PF01596_consen 121 QFDFVFIDAD-KRNYLEYFEKALPLLRPGGVIIADNVLWRGSV 162 (205)
T ss_dssp SEEEEEEEST-GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGG
T ss_pred ceeEEEEccc-ccchhhHHHHHhhhccCCeEEEEcccccccee
Confidence 7999999554 466544 589999999999999999876
No 22
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.21 E-value=2.6e-11 Score=95.94 Aligned_cols=108 Identities=11% Similarity=0.198 Sum_probs=93.7
Q ss_pred CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEE-cchhhhccCCCchh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIR-TNAMKYLPNYFRKA 131 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~-~d~~~~l~~~f~~~ 131 (170)
...+|||||++.|..+++||...| +.+++.+|+++++++.|++++++. +..+ |.++. +|+.+.+.. +..+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a------g~~~~i~~~~~gdal~~l~~-~~~~ 131 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA------GVDDRIELLLGGDALDVLSR-LLDG 131 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc------CCcceEEEEecCcHHHHHHh-ccCC
Confidence 368999999999999999999998 789999999999999999999987 4444 88888 599998877 6778
Q ss_pred hhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhcccC
Q psy13087 132 QVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQAL 170 (170)
Q Consensus 132 ~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 170 (170)
++|.+|+- ..++.|.+ +.+++.++....+|++++|.|+
T Consensus 132 ~fDliFID-adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~ 174 (219)
T COG4122 132 SFDLVFID-ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVA 174 (219)
T ss_pred CccEEEEe-CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccC
Confidence 99999994 55577765 6889999999999999998663
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.21 E-value=9e-11 Score=83.32 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=54.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..+++..|..+|+|+|+++.+++.++++++.. +.+++.++.+|+...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF------GVSNIVIVEGDAPEA 81 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh------CCCceEEEecccccc
Confidence 57999999999999999999988889999999999999999998775 556889888887643
No 24
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.21 E-value=1e-10 Score=92.00 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=56.1
Q ss_pred CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
++.+|||||||+|.++..+|+..+ +.+|+|+|+++++++.|++++++. +++|++++.+|+.+.+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~------g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL------GLDNVIVIVGDGTQGW 141 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCeEEEECCcccCC
Confidence 468999999999999999999864 457999999999999999999875 5689999999987643
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.20 E-value=2.4e-11 Score=99.80 Aligned_cols=112 Identities=12% Similarity=0.134 Sum_probs=76.1
Q ss_pred CccchhhhcccCCCCcCCCCCCCCCCCCCCcccc-CCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087 11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPL-YPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV 89 (170)
Q Consensus 11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~-~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~ 89 (170)
+.++|+.....++|.. .++.|.+.+.+.+... .... .+..+|||+|||+|.+++.++...|+.+++|+|+|+
T Consensus 83 g~~~f~g~~f~v~~~v--lipr~~te~lv~~~l~~~~~~-----~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~ 155 (284)
T TIGR03533 83 NEAWFAGLEFYVDERV--LIPRSPIAELIEDGFAPWLEP-----EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISP 155 (284)
T ss_pred CCCeecCcEEEECCCC--ccCCCchHHHHHHHHHHHhcc-----CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCH
Confidence 5667777666666543 2233333222222111 1111 124689999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087 90 KVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLPNYFRKAQVRRCFAN 139 (170)
Q Consensus 90 ~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~~~f~~~~l~~i~~~ 139 (170)
.+++.|++|++.. ++ ++|.++.+|+.+.++ .+.+|.|+.|
T Consensus 156 ~al~~A~~n~~~~------~~~~~i~~~~~D~~~~~~----~~~fD~Iv~N 196 (284)
T TIGR03533 156 DALAVAEINIERH------GLEDRVTLIQSDLFAALP----GRKYDLIVSN 196 (284)
T ss_pred HHHHHHHHHHHHc------CCCCcEEEEECchhhccC----CCCccEEEEC
Confidence 9999999998875 44 479999999865432 3345666554
No 26
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.20 E-value=1.3e-10 Score=89.42 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=54.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|.+++.+++.+|+.+|+|+|+++++++.|+++++.. ...+++++.+|+..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~------~~~~i~~~~~d~~~ 92 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF------GCGNIDIIPGEAPI 92 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCeEEEecCchh
Confidence 57999999999999999999988889999999999999999998765 45679998888754
No 27
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.18 E-value=7.6e-11 Score=93.18 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=53.9
Q ss_pred CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|+++.+.. ..+++.++.+|+..
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA------GLHNVELVHGNAME 107 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEEechhc
Confidence 36799999999999999999875 5679999999999999999998764 45789999988865
No 28
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.18 E-value=2.7e-11 Score=103.88 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=75.4
Q ss_pred CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087 11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK 90 (170)
Q Consensus 11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~ 90 (170)
+.+.||..+...+|.. .++.|.++...++..... .++.+|||||||+|.+++.++...|+.+++|+|+|++
T Consensus 216 G~~~F~G~~f~V~p~v--LIPRpeTE~LVe~aL~~l-------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ 286 (423)
T PRK14966 216 GVREFYGRRFAVNPNV--LIPRPETEHLVEAVLARL-------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPP 286 (423)
T ss_pred eeeeecCcEEEeCCCc--cCCCccHHHHHHHhhhcc-------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHH
Confidence 5666777766666643 123343332223222111 1246899999999999999999888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087 91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139 (170)
Q Consensus 91 ~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~ 139 (170)
+++.|++|++.. + .+++++++|+.+.. ....+.+|.|+.|
T Consensus 287 ALe~AreNa~~~------g-~rV~fi~gDl~e~~--l~~~~~FDLIVSN 326 (423)
T PRK14966 287 ALETARKNAADL------G-ARVEFAHGSWFDTD--MPSEGKWDIIVSN 326 (423)
T ss_pred HHHHHHHHHHHc------C-CcEEEEEcchhccc--cccCCCccEEEEC
Confidence 999999998764 3 37999999986431 1112346666654
No 29
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=2.8e-11 Score=96.81 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=80.5
Q ss_pred CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCC---ch
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF---RK 130 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f---~~ 130 (170)
+..+|||||||+|..++++|...+ +.+++++|+++++++.|++++++. +..++|+++.+|+.+.++.+. +.
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-----gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-----GVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 357999999999999999998754 579999999999999999999876 233579999999998765432 23
Q ss_pred hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087 131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA 169 (170)
Q Consensus 131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~ 169 (170)
+.+|.+|+...+ ..|.. +.+++.++....+|.+..|.|
T Consensus 143 ~~fD~VfiDa~k-~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v 185 (234)
T PLN02781 143 PEFDFAFVDADK-PNYVHFHEQLLKLVKVGGIIAFDNTLWFGFV 185 (234)
T ss_pred CCCCEEEECCCH-HHHHHHHHHHHHhcCCCeEEEEEcCCcCCee
Confidence 567777775433 33222 466666777777776665543
No 30
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=3.4e-11 Score=99.90 Aligned_cols=111 Identities=11% Similarity=0.115 Sum_probs=76.4
Q ss_pred CccchhhhcccCCCCcCCCCCCCCCCCCCCcccc-CCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087 11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPL-YPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV 89 (170)
Q Consensus 11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~-~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~ 89 (170)
+.+.||.....++|.. .++.|.....+.+... +.... ...+|||+|||+|.+++.++..+|+.+|+|+|+|+
T Consensus 95 g~~~F~g~~f~v~~~v--lipr~~te~lv~~~l~~~~~~~-----~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~ 167 (307)
T PRK11805 95 NEAWFCGLEFYVDERV--LVPRSPIAELIEDGFAPWLEDP-----PVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISP 167 (307)
T ss_pred CcceEcCcEEEECCCC--cCCCCchHHHHHHHHHHHhccC-----CCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCH
Confidence 6677777777776643 2344433322232211 11110 12589999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhccCCCchhhhhhhHh
Q psy13087 90 KVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLPNYFRKAQVRRCFA 138 (170)
Q Consensus 90 ~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~~~f~~~~l~~i~~ 138 (170)
.+++.|++|++.. ++ ++|.++++|+.+.++ .+.+|.|+.
T Consensus 168 ~al~~A~~n~~~~------~l~~~i~~~~~D~~~~l~----~~~fDlIvs 207 (307)
T PRK11805 168 DALAVAEINIERH------GLEDRVTLIESDLFAALP----GRRYDLIVS 207 (307)
T ss_pred HHHHHHHHHHHHh------CCCCcEEEEECchhhhCC----CCCccEEEE
Confidence 9999999999875 43 469999999865443 234555554
No 31
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.17 E-value=3.1e-11 Score=106.34 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=85.0
Q ss_pred CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCC-------------------CCCCCCCCCCeEEEEcCccchHHH
Q psy13087 11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPE-------------------LKDPTCEKKVEFVDVGCGYGGLLV 71 (170)
Q Consensus 11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~-------------------~~~~~~~~~~~vLDiGCG~G~~~~ 71 (170)
+.+.||.....++|.. .++.|.++...+|...... .......+..+|||||||+|.+++
T Consensus 77 G~~~F~g~~f~V~~~V--LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai 154 (506)
T PRK01544 77 GVKEFYSREFIVNKHV--LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAI 154 (506)
T ss_pred CcCEEcCcEEEeCCCc--ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHH
Confidence 7899999999999875 3588888766666432110 000000124689999999999999
Q ss_pred HHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087 72 TLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139 (170)
Q Consensus 72 ~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~ 139 (170)
.++..+|+.+|+|+|+|+.+++.|++|++.. +..+++.++++|+...++ .+.+|.|+.|
T Consensus 155 ~la~~~p~~~v~avDis~~al~~A~~N~~~~-----~l~~~v~~~~~D~~~~~~----~~~fDlIvsN 213 (506)
T PRK01544 155 SLLCELPNANVIATDISLDAIEVAKSNAIKY-----EVTDRIQIIHSNWFENIE----KQKFDFIVSN 213 (506)
T ss_pred HHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-----CCccceeeeecchhhhCc----CCCccEEEEC
Confidence 9999989899999999999999999998764 222479999999765432 2345555543
No 32
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.14 E-value=3.7e-10 Score=91.62 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=51.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|||||||+|.++..+++.. +..+|+|+|+|++|++.|+++...... ...+++.++++|+..
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATD 138 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEccccc
Confidence 36799999999999999999875 556899999999999999887542100 134689999998875
No 33
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.14 E-value=8.3e-11 Score=83.19 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=64.0
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC 136 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i 136 (170)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.++... +..++++++.+|+.+.. ..+..+.+|.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~-----~~~~~~~~~~~D~~~~~-~~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN-----GLDDRVEVIVGDARDLP-EPLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC-----TTTTTEEEEESHHHHHH-HTCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc-----cCCceEEEEECchhhch-hhccCceeEEE
Confidence 589999999999999999997 679999999999999999998775 23367999999998765 34566788888
Q ss_pred HhhhcC
Q psy13087 137 FANCIL 142 (170)
Q Consensus 137 ~~~~~~ 142 (170)
+.+-|-
T Consensus 75 v~npP~ 80 (117)
T PF13659_consen 75 VTNPPY 80 (117)
T ss_dssp EE--ST
T ss_pred EECCCC
Confidence 876443
No 34
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.13 E-value=1.1e-10 Score=95.81 Aligned_cols=101 Identities=17% Similarity=0.267 Sum_probs=69.9
Q ss_pred CccchhhhcccCCCCcCCCCCCCCCCCCCCcccc-CCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087 11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPL-YPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV 89 (170)
Q Consensus 11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~-~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~ 89 (170)
+.+.||......+|.. .++.|.+.....+... +... .+..+|||+|||+|.+++.++..+|+.+|+|+|+|+
T Consensus 76 g~~~f~g~~f~v~~~v--liPr~ete~lv~~~l~~~~~~-----~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~ 148 (284)
T TIGR00536 76 GSKEFYGLEFFVNEHV--LIPRPETEELVEKALASLISQ-----NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP 148 (284)
T ss_pred CcceEcCeEEEECCCC--cCCCCccHHHHHHHHHHhhhc-----CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH
Confidence 4566666666665542 2344443332222211 1111 012589999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhc
Q psy13087 90 KVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYL 124 (170)
Q Consensus 90 ~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l 124 (170)
++++.|++|++.. ++. ++.++++|+.+.+
T Consensus 149 ~al~~a~~n~~~~------~~~~~v~~~~~d~~~~~ 178 (284)
T TIGR00536 149 DALAVAEENAEKN------QLEHRVEFIQSNLFEPL 178 (284)
T ss_pred HHHHHHHHHHHHc------CCCCcEEEEECchhccC
Confidence 9999999998775 444 4999999876543
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.13 E-value=8.9e-11 Score=92.22 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=51.9
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
...|+|||||+|..+..++.++|+..++|||.|++|++.|+++ ++|++|.++|+...-
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----------lp~~~f~~aDl~~w~ 88 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----------LPDATFEEADLRTWK 88 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----------CCCCceecccHhhcC
Confidence 4789999999999999999999999999999999999999655 478999999887654
No 36
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.13 E-value=2.5e-10 Score=91.77 Aligned_cols=64 Identities=11% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCCeEEEEcCccchHHHHHhhh--CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPM--FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~--~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++.+|||||||+|..+..+++. .|+.+|+|+|+|+.|++.|+++++.. +...++.++.+|+.+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-----~~~~~v~~~~~d~~~~ 121 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVDVIEGDIRDI 121 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEeCChhhC
Confidence 3679999999999999999884 57889999999999999999998764 2234799999888753
No 37
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=5.5e-10 Score=87.45 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL 124 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l 124 (170)
++.+|||||||+|.++..+++..+ ..+|+|+|+++++++.|+++++.. +. .+++++.+|+.+.+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~------~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL------GYWGVVEVYHGDGKRGL 137 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEEECCcccCC
Confidence 468999999999999999998764 458999999999999999998765 44 36999999987644
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.12 E-value=1.9e-10 Score=79.92 Aligned_cols=57 Identities=23% Similarity=0.499 Sum_probs=46.3
Q ss_pred EEEEcCccchHHHHHhhhC---CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 59 FVDVGCGYGGLLVTLSPMF---PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~---p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
|||+|||+|..+..++..+ |..+++|+|+|++|++.++++.... +. +++++++|+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~------~~-~~~~~~~D~~~ 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED------GP-KVRFVQADARD 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT------TT-TSEEEESCTTC
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc------CC-ceEEEECCHhH
Confidence 7999999999999999986 4479999999999999999998663 33 79999999876
No 39
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.12 E-value=7.1e-11 Score=94.07 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=61.9
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
+.+|||+|||+|.++..++..+|...++|+|+++.+++.|++++... +.+++.++.+|+...+ +.+.+|.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~----~~~~fD~ 157 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL------GLDNVTFLQSDWFEPL----PGGKFDL 157 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhccC----cCCceeE
Confidence 45899999999999999999988889999999999999999998765 5678999999987533 3455666
Q ss_pred hHhh
Q psy13087 136 CFAN 139 (170)
Q Consensus 136 i~~~ 139 (170)
|+.+
T Consensus 158 Vi~n 161 (251)
T TIGR03534 158 IVSN 161 (251)
T ss_pred EEEC
Confidence 6553
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.12 E-value=8.8e-11 Score=92.11 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=46.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|.++..++...|+..++|||+|++|++.|+++. +++.++++|+.+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~ 99 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFD 99 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccC
Confidence 56899999999999999998878889999999999999998763 345566666554
No 41
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.12 E-value=3.3e-10 Score=90.37 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=53.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..+++.+ |+++++|+|+|+.|++.|+++++.. +...+++++++|+...
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-----~~~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRHV 118 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECChhhC
Confidence 5799999999999999999864 6889999999999999999998664 2235789998888764
No 42
>PLN02476 O-methyltransferase
Probab=99.12 E-value=7.9e-11 Score=96.35 Aligned_cols=109 Identities=12% Similarity=0.157 Sum_probs=89.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCc---h
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR---K 130 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~---~ 130 (170)
+..+|||||||+|..++++|...| +..++++|++++.++.|++++++. +..++|+++.+|+.+.|+.+.. .
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-----Gl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-----GVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 367999999999999999998765 568999999999999999999886 3335899999999998865421 3
Q ss_pred hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087 131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA 169 (170)
Q Consensus 131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~ 169 (170)
+.+|.+|+- ..++.|.+ +.+++.++....+|++..|.|
T Consensus 193 ~~FD~VFID-a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V 235 (278)
T PLN02476 193 SSYDFAFVD-ADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRV 235 (278)
T ss_pred CCCCEEEEC-CCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcc
Confidence 578888884 44466655 678889999999999888875
No 43
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.11 E-value=6.3e-10 Score=87.62 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=55.1
Q ss_pred CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++.+|||||||+|.++..+++..+ +.+|+|+|+++++++.|+++++.. +..|+.++.+|+...
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------GYDNVEVIVGDGTLG 139 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccC
Confidence 478999999999999999998753 468999999999999999999875 567899999998653
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=99.11 E-value=2.2e-10 Score=96.28 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=53.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|||||||+|.++..+++.+ +.+|+|||+|+.+++.|+++++.. +..+++.++.+|+..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~-----g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ-----GLSDKVSFQVADALN 179 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEcCccc
Confidence 46799999999999999999987 578999999999999999987764 223579999998865
No 45
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=6e-10 Score=89.78 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=52.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..++.. +.+|+|+|+|++|++.|+++++.. +..++++++++|+.+.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~-----g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAK-----GVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc-----CCccceEEEEcCHHHH
Confidence 579999999999999999987 468999999999999999988764 2336799999888653
No 46
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.09 E-value=5.6e-10 Score=89.87 Aligned_cols=42 Identities=26% Similarity=0.447 Sum_probs=39.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
+.+|||||||+|.++..++..+|+.+|+|+|+|+.|++.|++
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE 71 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence 579999999999999999999888899999999999999864
No 47
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.07 E-value=8e-10 Score=88.86 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=47.9
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|.++..++..+|+.+|+|+|+|+.|++.|+++. +++.++.+|+..
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~~~ 87 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----------PDCQFVEADIAS 87 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECchhc
Confidence 57999999999999999999998889999999999999998763 356666666654
No 48
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.07 E-value=2.4e-10 Score=88.40 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQV 133 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l 133 (170)
+++.+|||||||.|.++..|... .++...|||++++.+..+.++ .+.++++|+.+.|.+ |+++++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~-f~d~sF 76 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLAD-FPDQSF 76 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhh-CCCCCc
Confidence 34789999999999999999885 588999999999998887665 367899999988864 666777
Q ss_pred hhhHhh
Q psy13087 134 RRCFAN 139 (170)
Q Consensus 134 ~~i~~~ 139 (170)
|.+...
T Consensus 77 D~VIls 82 (193)
T PF07021_consen 77 DYVILS 82 (193)
T ss_pred cEEehH
Confidence 766553
No 49
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=1.7e-10 Score=93.33 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
+.+|||+|||+|.++..++...|...++|+|+++.+++.|+++++. ....++.++.+|+...+. .+.+|.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~------~~~~~i~~~~~d~~~~~~----~~~fD~ 178 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH------GLGARVEFLQGDWFEPLP----GGRFDL 178 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh------CCCCcEEEEEccccCcCC----CCceeE
Confidence 5789999999999999999999888999999999999999999872 234689999998854322 344555
Q ss_pred hHh
Q psy13087 136 CFA 138 (170)
Q Consensus 136 i~~ 138 (170)
++.
T Consensus 179 Iv~ 181 (275)
T PRK09328 179 IVS 181 (275)
T ss_pred EEE
Confidence 544
No 50
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.06 E-value=2.4e-10 Score=97.31 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=53.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
..+|||||||+|.+++.+++.+|+.+|+++|+|+.+++.|+++++.... ....++.++..|+...
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~---~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALSG 293 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc---ccCceEEEEEcccccc
Confidence 3589999999999999999999999999999999999999999876410 1124788888877543
No 51
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.06 E-value=1.3e-10 Score=93.77 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=57.2
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC 136 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i 136 (170)
.+|||+|||+|.+++.++...++.+++|+|+|+.+++.|++|++.. +++++++|+.+.++... .+.+|.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---------~~~~~~~D~~~~l~~~~-~~~fDlV 157 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---------GGTVHEGDLYDALPTAL-RGRVDIL 157 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------CCEEEEeechhhcchhc-CCCEeEE
Confidence 5899999999999999999888889999999999999999998653 25788888776543211 1345555
Q ss_pred Hhh
Q psy13087 137 FAN 139 (170)
Q Consensus 137 ~~~ 139 (170)
+.|
T Consensus 158 v~N 160 (251)
T TIGR03704 158 AAN 160 (251)
T ss_pred EEC
Confidence 554
No 52
>PRK06922 hypothetical protein; Provisional
Probab=99.06 E-value=3.5e-10 Score=101.33 Aligned_cols=73 Identities=25% Similarity=0.320 Sum_probs=57.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
+.+|||||||+|.++..++..+|+.+|+|+|+|+.|++.|+++.... + .++.++.+|+.. +++.|+++++|.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~------g-~~ie~I~gDa~d-Lp~~fedeSFDv 490 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE------G-RSWNVIKGDAIN-LSSSFEKESVDT 490 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc------C-CCeEEEEcchHh-CccccCCCCEEE
Confidence 57999999999999999999999999999999999999999886542 2 467888888765 343444444443
Q ss_pred h
Q psy13087 136 C 136 (170)
Q Consensus 136 i 136 (170)
+
T Consensus 491 V 491 (677)
T PRK06922 491 I 491 (677)
T ss_pred E
Confidence 3
No 53
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.05 E-value=1.1e-09 Score=91.42 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=49.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++.+|||||||+|.++..+++. +.+|+|||+++++++.|+++.+.. ....+|.++.+|+.+.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~-----~~~~~i~~~~~dae~l 192 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMD-----PVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc-----CcccceeEEecCHHHh
Confidence 3568999999999999999875 568999999999999999876442 1224788888887653
No 54
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.04 E-value=8.6e-10 Score=85.84 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=50.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||+|||+|.++..+|+. +.+|+|+|+|+.|++.|+++++.. +..++.++..|+..
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~------~~~~v~~~~~d~~~ 89 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAE------NLDNLHTAVVDLNN 89 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHc------CCCcceEEecChhh
Confidence 468999999999999999987 468999999999999999987764 55678888777654
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.04 E-value=1.1e-09 Score=85.13 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc-----------
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL----------- 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l----------- 124 (170)
+.++||||||.|+.+++||+. +..|+++|+|+.+++.+++.+++. +++ |+....|...+.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~------~l~-i~~~~~Dl~~~~~~~~yD~I~st 101 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE------GLD-IRTRVADLNDFDFPEEYDFIVST 101 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT------T-T-EEEEE-BGCCBS-TTTEEEEEEE
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc------Cce-eEEEEecchhccccCCcCEEEEE
Confidence 479999999999999999998 678999999999999998877654 443 777777765421
Q ss_pred --cCCCchhhhhhhHhh---hcCCccccch
Q psy13087 125 --PNYFRKAQVRRCFAN---CILNSQYENI 149 (170)
Q Consensus 125 --~~~f~~~~l~~i~~~---~~~~g~~~~~ 149 (170)
-.++.++.+..++.+ +.+||||.-+
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 134566665555444 5678887554
No 56
>PRK04266 fibrillarin; Provisional
Probab=99.03 E-value=5.7e-10 Score=88.91 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|||+|||+|.++..+|...+...|+|+|+++.|++.+.+++++. +||.++.+|+..
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~~D~~~ 131 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------KNIIPILADARK 131 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEECCCCC
Confidence 468999999999999999999886568999999999999888776542 688988888753
No 57
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.02 E-value=4.3e-10 Score=90.44 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=63.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
..+|||||||+|.+++.+|.+.+.+.++|||+++.+++.|+++++.. .-.++|+++++|+..+..+. ...++|.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-----~l~~ri~v~~~Di~~~~~~~-~~~~fD~ 118 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-----PLEERIQVIEADIKEFLKAL-VFASFDL 118 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-----cchhceeEehhhHHHhhhcc-cccccCE
Confidence 47999999999999999999988899999999999999999999763 23467999999999876432 2225666
Q ss_pred hHhh
Q psy13087 136 CFAN 139 (170)
Q Consensus 136 i~~~ 139 (170)
|+.|
T Consensus 119 Ii~N 122 (248)
T COG4123 119 IICN 122 (248)
T ss_pred EEeC
Confidence 6554
No 58
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.02 E-value=2.2e-09 Score=84.45 Aligned_cols=60 Identities=28% Similarity=0.497 Sum_probs=51.6
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+|||||||+|.++..+++.+|+.+++|+|+|+++++.|++++... +..+++.++.+|+..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-----gl~~~i~~~~~d~~~ 61 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-----GLQGRIRIFYRDSAK 61 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEeccccc
Confidence 699999999999999999988889999999999999999998764 233568888888743
No 59
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=4e-10 Score=90.86 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=89.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCc----h
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR----K 130 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~----~ 130 (170)
..+|||||+++|..++++|...| +.+++.+|++++..+.|++++++. +..++|+++.+|+.+.|+.... .
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----g~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-----GVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----CCCCceEEEeccHHHHHHHHHhccccC
Confidence 57999999999999999998764 679999999999999999999886 3457899999999998876533 3
Q ss_pred hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087 131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA 169 (170)
Q Consensus 131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~ 169 (170)
+.+|.+|+- ..+..|.+ +.+++.+++...||++..|.|
T Consensus 155 ~~fD~iFiD-adK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v 197 (247)
T PLN02589 155 GTFDFIFVD-ADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSV 197 (247)
T ss_pred CcccEEEec-CCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcc
Confidence 578988885 34455543 688999999999999887765
No 60
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.01 E-value=7.9e-10 Score=95.90 Aligned_cols=76 Identities=12% Similarity=0.203 Sum_probs=61.7
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKAQV 133 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~~l 133 (170)
++.+|||+|||+|.+++.+|+.. ..|+|+|+|++|++.|++|++.. +.+|++++.+|+.+.+... +..+.+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN------GLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEeChHHhhhhhhhhcCCC
Confidence 46799999999999999999885 57999999999999999998765 5678999999998765322 333456
Q ss_pred hhhHh
Q psy13087 134 RRCFA 138 (170)
Q Consensus 134 ~~i~~ 138 (170)
|.++.
T Consensus 369 D~Vi~ 373 (443)
T PRK13168 369 DKVLL 373 (443)
T ss_pred CEEEE
Confidence 66655
No 61
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.01 E-value=1.8e-09 Score=83.95 Aligned_cols=65 Identities=23% Similarity=0.365 Sum_probs=54.9
Q ss_pred CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
++.+|||+|||+|.+++.+|+.. +..+|+++|+++++++.|+++++.. +..+++.++.+|+.+.+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-----g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-----GVLNNIVLIKGEAPEIL 105 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCCeEEEEechhhhH
Confidence 46899999999999999998864 4568999999999999999998875 22468999999987644
No 62
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.00 E-value=1e-09 Score=73.90 Aligned_cols=67 Identities=22% Similarity=0.466 Sum_probs=50.9
Q ss_pred EEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139 (170)
Q Consensus 60 LDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~ 139 (170)
||||||+|..+..+++. +..+++|+|+++++++.++++... .++.++.+|+... + |+++++|.++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l-~--~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDL-P--FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSS-S--S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhC-c--cccccccccccc
Confidence 89999999999999998 778999999999999999988633 4577888887764 2 556677666543
No 63
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.00 E-value=7.5e-10 Score=83.98 Aligned_cols=58 Identities=22% Similarity=0.397 Sum_probs=50.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..++.. ..+++|+|+++.+++.++++... .+|++++++|+.+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~ 71 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKF 71 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcC
Confidence 578999999999999999988 46899999999999999888632 35899999999875
No 64
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.00 E-value=8.6e-10 Score=91.70 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=60.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
+.+|||+|||+|.+++.+|.. ...|+|+|+++.+++.|+++++.. +++|++++.+|+.++... ..+.+|.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~------~l~~v~~~~~D~~~~~~~--~~~~~D~ 243 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAEL------GLTNVQFQALDSTQFATA--QGEVPDL 243 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEcCHHHHHHh--cCCCCeE
Confidence 579999999999999999985 468999999999999999999875 567899999999876532 1224666
Q ss_pred hHhh
Q psy13087 136 CFAN 139 (170)
Q Consensus 136 i~~~ 139 (170)
++.+
T Consensus 244 Vv~d 247 (315)
T PRK03522 244 VLVN 247 (315)
T ss_pred EEEC
Confidence 6664
No 65
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.98 E-value=4.6e-09 Score=87.79 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=55.6
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
++.+|||||||+|.++..+|+..+. ..|+|+|+++++++.|+++++.. +.+|+.++.+|+...+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL------GIENVIFVCGDGYYGV 144 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCChhhcc
Confidence 4689999999999999999998753 47999999999999999998875 5688999999987654
No 66
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.98 E-value=1.5e-09 Score=88.08 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.++.+|||||||+|..++.+++.. +..+|+|+|+++.+++.|+++.+.. +.+++.++.+|+..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------g~~~v~~~~~d~~~ 139 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------GYTNVEFRLGEIEA 139 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc------CCCCEEEEEcchhh
Confidence 457899999999999888877764 4558999999999999999988765 56789998888765
No 67
>PRK04457 spermidine synthase; Provisional
Probab=98.98 E-value=5.9e-10 Score=90.59 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=54.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+.+|||||||+|.++..+++.+|+.++++||+++++++.|+++.... ...++++++.+|+.+++
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-----~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-----ENGERFEVIEADGAEYI 130 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-----CCCCceEEEECCHHHHH
Confidence 46899999999999999999999999999999999999999886432 12368999999987765
No 68
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.97 E-value=2.1e-09 Score=85.66 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=40.9
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
.+.+|||||||-|.++..||+. +.+|+|+|+++++|+.|+....+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e 103 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALE 103 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhh
Confidence 3689999999999999999998 47899999999999999987654
No 69
>KOG1271|consensus
Probab=98.97 E-value=8.1e-10 Score=84.86 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhccCCCchhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYLPNYFRKAQVR 134 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l~~~f~~~~l~ 134 (170)
.++|||+|||.|.++..|++..=...++|||.|+++++.|+..++.. +++| |+|.+.|+... . |-+++++
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~------~~~n~I~f~q~DI~~~--~-~~~~qfd 138 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD------GFSNEIRFQQLDITDP--D-FLSGQFD 138 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc------CCCcceeEEEeeccCC--c-cccccee
Confidence 35999999999999999999743346999999999999987766654 6677 99999988752 2 2233343
Q ss_pred hhHhhhcCCccccchhhhcc
Q psy13087 135 RCFANCILNSQYENIACIRT 154 (170)
Q Consensus 135 ~i~~~~~~~g~~~~~~~~~~ 154 (170)
. ...+|.++.|++.+.
T Consensus 139 l----vlDKGT~DAisLs~d 154 (227)
T KOG1271|consen 139 L----VLDKGTLDAISLSPD 154 (227)
T ss_pred E----EeecCceeeeecCCC
Confidence 3 345677777776643
No 70
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.96 E-value=1.2e-09 Score=94.27 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=62.2
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKAQV 133 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~~l 133 (170)
++.+|||+|||+|.+++.+|+.. ..|+|+|+++++++.|++|++.. +++|++++.+|+.+.++.+ +..+.+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~------~~~nv~~~~~d~~~~l~~~~~~~~~~ 363 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELN------GIANVEFLAGTLETVLPKQPWAGQIP 363 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHh------CCCceEEEeCCHHHHHHHHHhcCCCC
Confidence 45799999999999999999874 47999999999999999998775 6789999999998765432 223345
Q ss_pred hhhHhh
Q psy13087 134 RRCFAN 139 (170)
Q Consensus 134 ~~i~~~ 139 (170)
|.++..
T Consensus 364 D~vi~d 369 (431)
T TIGR00479 364 DVLLLD 369 (431)
T ss_pred CEEEEC
Confidence 666653
No 71
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.96 E-value=3.2e-09 Score=83.51 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=50.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|.++..++.. +..++|+|+|++|+..|+++.... +...++.+..+|+..
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~-----~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGR-----DVAGNVEFEVNDLLS 115 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECChhh
Confidence 689999999999999999986 458999999999999999988653 122478998888764
No 72
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.96 E-value=1.7e-09 Score=84.62 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=58.5
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
+.+|||+|||+|.+++.++.... .+|++||+++++++.|++|++.. +..|+.++.+|+.+.++. ..+.+|.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~------~~~~v~~~~~D~~~~l~~--~~~~fDl 124 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL------KAGNARVVNTNALSFLAQ--PGTPHNV 124 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEEchHHHHHhh--cCCCceE
Confidence 57999999999999997554443 58999999999999999998876 567899999999876632 1223555
Q ss_pred hHhh
Q psy13087 136 CFAN 139 (170)
Q Consensus 136 i~~~ 139 (170)
|+.+
T Consensus 125 V~~D 128 (199)
T PRK10909 125 VFVD 128 (199)
T ss_pred EEEC
Confidence 5553
No 73
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.96 E-value=1.9e-09 Score=84.93 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ 132 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~ 132 (170)
+++.+|||||||+|.++..+|.... ...|++||+++..++.|+++++.+ +..||.++.+|....++. ...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------~~~nv~~~~gdg~~g~~~---~ap 141 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------GIDNVEVVVGDGSEGWPE---EAP 141 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------TTHSEEEEES-GGGTTGG---G-S
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------ccCceeEEEcchhhcccc---CCC
Confidence 4579999999999999999999864 347999999999999999999987 678999999998765542 233
Q ss_pred hhhhHh
Q psy13087 133 VRRCFA 138 (170)
Q Consensus 133 l~~i~~ 138 (170)
+|.|+.
T Consensus 142 fD~I~v 147 (209)
T PF01135_consen 142 FDRIIV 147 (209)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 455444
No 74
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2e-09 Score=84.37 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN 126 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~ 126 (170)
++++.+|||||||+|..+.-||+... +|+.||+.++..+.|+++++.+ ++.||.++++|...-++.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~l------g~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL------GYENVTVRHGDGSKGWPE 135 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHc------CCCceEEEECCcccCCCC
Confidence 34579999999999999999999864 7999999999999999999997 788999999999877653
No 75
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.92 E-value=2.4e-09 Score=87.87 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|.++..+|.. +.+|+|+|+|+.+++.++++++.. ++ ++++...|+..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~------~l-~v~~~~~D~~~ 178 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE------NL-NIRTGLYDINS 178 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEechhc
Confidence 458999999999999999986 468999999999999999988764 44 67777776643
No 76
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.91 E-value=7.2e-11 Score=81.50 Aligned_cols=43 Identities=33% Similarity=0.600 Sum_probs=37.6
Q ss_pred EEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 60 LDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
||||||+|.++..++..+|..+++|+|+|+.|++.|+++....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~ 43 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL 43 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc
Confidence 7999999999999999999999999999999999998888764
No 77
>PLN02672 methionine S-methyltransferase
Probab=98.90 E-value=2.1e-09 Score=101.19 Aligned_cols=108 Identities=11% Similarity=0.125 Sum_probs=76.5
Q ss_pred CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087 11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK 90 (170)
Q Consensus 11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~ 90 (170)
+.+.||+....++|.. .++.|.+....++....+... -++.+|||||||+|.+++.+++.+|...|+|+|+|++
T Consensus 80 G~~~F~~l~~~V~p~V--LIPRpeTE~lve~L~~~~~~~----~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~ 153 (1082)
T PLN02672 80 GFRNRKKLTMMEIPSI--FIPEDWSFTFYEGLNRHPDSI----FRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPR 153 (1082)
T ss_pred CeEEecCCceeeCCCc--ccCchhHHHHHHHHHhccccc----CCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHH
Confidence 6778888888888864 245555544444411111110 0146899999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHhhc----------CCCCCCCeEEEEcchhhhc
Q psy13087 91 VSDYVIDRVAALRSQ----------NKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 91 ~i~~a~~~~~~~~~~----------~~~~~~nv~~i~~d~~~~l 124 (170)
+++.|++|++....+ .++..++|+++++|..+.+
T Consensus 154 Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 154 AVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred HHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 999999999763110 0012357999999987654
No 78
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.90 E-value=1.4e-08 Score=79.60 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=52.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++.+|||||||+|.++..+++.. .+++++|+++++++.|+++++.. ++.|+.++.+|+...
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~ 138 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL------GLHNVSVRHGDGWKG 138 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC------CCCceEEEECCcccC
Confidence 46899999999999999888875 37999999999999999998875 667899999987653
No 79
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.90 E-value=2e-09 Score=85.00 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=47.5
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc------CCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ------NKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||+|||.|..+..||.+ +.+|+|||+|+.+++.+.++....... ......+|+++++|+.+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 579999999999999999987 678999999999999864432100000 000124688999998754
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.7e-09 Score=87.70 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=53.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||+|||+|-+++.+|+.+|...++.+|+|..+++.|++|++.. ..++..+...|..+-
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N------~~~~~~v~~s~~~~~ 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN------GVENTEVWASNLYEP 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc------CCCccEEEEeccccc
Confidence 45999999999999999999999999999999999999999999874 556655566666543
No 81
>PRK00811 spermidine synthase; Provisional
Probab=98.89 E-value=3e-09 Score=87.35 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=54.5
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
..+||+||||+|.++.++++..+..+|++||+++++++.|++......... -.-++++++.+|+..++.
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDDPRVELVIGDGIKFVA 145 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccCCceEEEECchHHHHh
Confidence 578999999999999999876455689999999999999999876531100 013679999999988764
No 82
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.89 E-value=7.1e-09 Score=80.56 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=45.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~ 120 (170)
+.+|||+|||+|.++..+|+. +..|+|+|+|+.|++.++++++.. ++ ++.+..+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~------~~-~v~~~~~d~ 86 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE------NL-PLRTDAYDI 86 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh------CC-CceeEeccc
Confidence 468999999999999999986 468999999999999999887653 33 255555554
No 83
>PRK08317 hypothetical protein; Provisional
Probab=98.89 E-value=1.4e-08 Score=79.49 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=50.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||+|||+|.++..++..+ |..+++|+|+++.+++.|+++... ...++.++.+|+..
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------~~~~~~~~~~d~~~ 80 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-------LGPNVEFVRGDADG 80 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-------CCCceEEEeccccc
Confidence 5799999999999999999987 677999999999999999887322 33578888887654
No 84
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.88 E-value=2.9e-09 Score=86.66 Aligned_cols=56 Identities=21% Similarity=0.459 Sum_probs=46.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCC---CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPS---TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~---~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
..+|||||||+|.++..++...+. ..++|+|+|+.|++.|+++. +++.++.+|+..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~ 144 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHR 144 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeeccc
Confidence 468999999999999999988763 37999999999999987642 467888877764
No 85
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.88 E-value=3.1e-09 Score=89.53 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=50.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
..+|||||||+|.++..+++.+|...|+++|+|+.+++.|+++++.. ++ ..+++.+|+..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n------~l-~~~~~~~D~~~ 256 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN------GL-EGEVFASNVFS 256 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CC-CCEEEEccccc
Confidence 35899999999999999999999889999999999999999998764 33 24566666543
No 86
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.88 E-value=6.6e-09 Score=84.77 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=49.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..++...+ +|+|+|+++.|++.++++.. . +++.++++|+.+.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~--------~-~~v~~i~~D~~~~ 99 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA--------E-DNLTIIEGDALKV 99 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc--------c-CceEEEEChhhcC
Confidence 57999999999999999999864 79999999999999987652 2 5899999998764
No 87
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.88 E-value=9.7e-09 Score=87.70 Aligned_cols=59 Identities=19% Similarity=0.409 Sum_probs=48.3
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.++.+|||||||+|.++..+++.+ +++|+|+|+|+++++.|+++++. .++++..+|...
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~ 224 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRD 224 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhh
Confidence 457899999999999999999876 56899999999999999988742 136666666654
No 88
>PRK06202 hypothetical protein; Provisional
Probab=98.87 E-value=3.5e-09 Score=84.09 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=38.5
Q ss_pred CCeEEEEcCccchHHHHHhhh----CCCCeEEEEECCHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPM----FPSTLILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~----~p~~~v~GvDis~~~i~~a~~~~~ 100 (170)
+.+|||||||+|.++..+++. .++.+|+|+|+|++|++.|+++..
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence 579999999999999988864 345689999999999999988753
No 89
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.87 E-value=4.5e-09 Score=85.37 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.++.+|||||||+|..+..++..+ +++|+|+|+|+.+++.|+++... .+++.++.+|+..
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~ 110 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILK 110 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCccc
Confidence 346899999999999999998875 56899999999999999987532 2578888888764
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=98.86 E-value=6.1e-09 Score=82.37 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|+++++.. +. ++.++.+|+.+.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~------~~-~~~~~~~d~~~~ 96 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA------GV-DVDVRRGDWARA 96 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh------CC-eeEEEECchhhh
Confidence 5799999999999999999763 348999999999999999998764 33 578888887653
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.86 E-value=8.3e-09 Score=83.11 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcc
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTN 119 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d 119 (170)
.++.+|||||||+|.+++.+++..+ ..|+|+|+|+.+++.|+++++.. +. .++.+..+|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~------~~~~~~~~~~~~ 177 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN------GVELNVYLPQGD 177 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc------CCCceEEEccCC
Confidence 3578999999999999998877643 46999999999999999998764 33 345555444
No 92
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=6.3e-09 Score=90.28 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ 132 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~ 132 (170)
.++.+|||+|||+|..+..++... +...++|+|+++.+++.+++++++. ++++|.++.+|+...... ++ +.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~-~~-~~ 320 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------GLTNIETKALDARKVHEK-FA-EK 320 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCCcccccch-hc-cc
Confidence 346899999999999999999876 5679999999999999999999875 667899999998764321 11 34
Q ss_pred hhhhHh
Q psy13087 133 VRRCFA 138 (170)
Q Consensus 133 l~~i~~ 138 (170)
+|.|+.
T Consensus 321 fD~Vl~ 326 (444)
T PRK14902 321 FDKILV 326 (444)
T ss_pred CCEEEE
Confidence 555554
No 93
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.85 E-value=1.4e-08 Score=77.47 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=49.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||+|||+|.++..++...+ +|+|+|+|+++++.|+++++.. .. +++++.+|+.+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~ 77 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN------NV-GLDVVMTDLFK 77 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEccccc
Confidence 46899999999999999998865 7999999999999999998753 32 68888888764
No 94
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.3e-08 Score=83.97 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=43.7
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
..++.+|||+|||+|.+++.+++... ..++|+|+++.+++.|++|++..
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc
Confidence 45689999999999999999998853 57999999999999999998763
No 95
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.84 E-value=1.1e-08 Score=84.37 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.+..+|||||||+|.+++.+++.+|+.+++++|+ +.+++.+++++++. +..++|+++.+|+.+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-----GVADRMRGIAVDIYK 210 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-----CccceEEEEecCccC
Confidence 3457999999999999999999999999999997 79999999998775 233579999999764
No 96
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.84 E-value=2e-08 Score=87.51 Aligned_cols=60 Identities=20% Similarity=0.435 Sum_probs=50.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|||||||+|.++..++..+ +++|+|+|+|++++..|+++.... ..++.++.+|+..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~ 325 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTK 325 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCccc
Confidence 36799999999999999999876 579999999999999998876432 2468888888764
No 97
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.84 E-value=2.8e-08 Score=83.03 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=46.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|.++..++...+. .|+|||.|+.++..++...... +...+|.++.+|+..
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~-----~~~~~i~~~~~d~e~ 183 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLL-----GNDQRAHLLPLGIEQ 183 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEeCCHHH
Confidence 689999999999999999998654 6999999999987655443221 112478888777654
No 98
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.83 E-value=5.1e-09 Score=79.44 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=56.1
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCF 137 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~ 137 (170)
.|+|+.||.|..++.+|+.+. +|++||+++..++.|+.|++-. +..+||.++++|+.+.+.+.-.....|.||
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vY-----Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVY-----GVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT-----T-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 699999999999999999964 5999999999999999999887 446789999999999876543322357777
Q ss_pred h
Q psy13087 138 A 138 (170)
Q Consensus 138 ~ 138 (170)
.
T Consensus 75 l 75 (163)
T PF09445_consen 75 L 75 (163)
T ss_dssp E
T ss_pred E
Confidence 5
No 99
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=8.7e-09 Score=79.93 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=54.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~ 125 (170)
+.+|||++||+|.++++++.+.. ..|++||+++.+++.+++|++.. ++ ++++++++|+.+++.
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~------~~~~~~~~~~~D~~~~l~ 113 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL------KSGEQAEVVRNSALRALK 113 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh------CCcccEEEEehhHHHHHH
Confidence 57999999999999999998854 48999999999999999999876 34 479999999977653
No 100
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.83 E-value=9.1e-09 Score=80.93 Aligned_cols=62 Identities=19% Similarity=0.368 Sum_probs=51.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|.++..++...+ ..+++|+|+++.+++.++++.... +...++.++.+|+..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~ 114 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----GLSGNVEFVQGDAEA 114 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----ccccCeEEEeccccc
Confidence 57999999999999999999886 579999999999999999987542 123468888888764
No 101
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.82 E-value=1.5e-08 Score=83.88 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=49.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||+|||+|..+..+++..+ ..+|+|||+|++|++.|++++... ....+|.++++|..+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----YPQLEVHGICADFTQ 126 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----CCCceEEEEEEcccc
Confidence 57899999999999999998875 478999999999999999987653 111246667787654
No 102
>KOG3420|consensus
Probab=98.81 E-value=1.8e-09 Score=80.17 Aligned_cols=87 Identities=18% Similarity=0.396 Sum_probs=64.0
Q ss_pred cCCCCcCCCC-CCCCCCCCCCc-----cccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHH
Q psy13087 21 HSNPIADHSV-EYPPSPNDMDW-----SPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDY 94 (170)
Q Consensus 21 ~~~p~~~~~~-~~p~~~~~~~w-----~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~ 94 (170)
...|.. .+ |||++|+...- ...+++.. +++++|||||.|.+.++.+.. ....|+|+||++++++.
T Consensus 16 FeKpk~--~LEQY~T~p~iAasM~~~Ih~TygdiE------gkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEI 86 (185)
T KOG3420|consen 16 FEKPKL--LLEQYPTRPHIAASMLYTIHNTYGDIE------GKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEI 86 (185)
T ss_pred ccccch--hhhhCCCcHHHHHHHHHHHHhhhcccc------CcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHH
Confidence 444543 24 89999875321 22355543 789999999999999776644 44589999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 95 VIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 95 a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+++|+++. . -++.++++|..+.
T Consensus 87 f~rNaeEf------E-vqidlLqcdildl 108 (185)
T KOG3420|consen 87 FTRNAEEF------E-VQIDLLQCDILDL 108 (185)
T ss_pred HhhchHHh------h-hhhheeeeeccch
Confidence 99999886 2 2468888887764
No 103
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.81 E-value=9.8e-09 Score=80.58 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=49.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..++...+...++|+|+++.++..++++.. +++.++.+|+...
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~ 92 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKL 92 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhC
Confidence 368999999999999999999988889999999999998877641 3677777777653
No 104
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.81 E-value=2.1e-08 Score=82.90 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=52.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++..|||||||+|.++..+++.. .+|+|+|+++.+++.+++++... +..++++++++|+.+.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~-----~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNS-----PLASKLEVIEGDALKT 97 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhc-----CCCCcEEEEECCHhhh
Confidence 36799999999999999999874 46999999999999999988654 2247899999999763
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=1.3e-08 Score=87.99 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQV 133 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l 133 (170)
.++.+|||+|||+|..+..++...++..|+|+|++++++..++++++.. +. +++++.+|+... +.++..+.+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~------g~-~~~~~~~D~~~~-~~~~~~~~f 314 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL------GL-KATVIVGDARDP-AQWWDGQPF 314 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc------CC-CeEEEEcCcccc-hhhcccCCC
Confidence 4578999999999999999999887679999999999999999999875 44 378888888753 222334455
Q ss_pred hhhHh
Q psy13087 134 RRCFA 138 (170)
Q Consensus 134 ~~i~~ 138 (170)
|.|+.
T Consensus 315 D~Vl~ 319 (427)
T PRK10901 315 DRILL 319 (427)
T ss_pred CEEEE
Confidence 65554
No 106
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.80 E-value=2.2e-08 Score=78.79 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=48.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~ 121 (170)
+.+|||||||+|.++..++... ..|+|+|+|+.+++.|+++.... +. +++.+..+|..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~ 122 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA------GLAGNITFEVGDLE 122 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc------CCccCcEEEEcCch
Confidence 5799999999999999999874 46999999999999999987654 22 57888888743
No 107
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.80 E-value=1.5e-08 Score=82.08 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=50.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..+++.. .+++|+|+++.+++.++++... .+|+.++.+|+.+.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~ 87 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKV 87 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccC
Confidence 6799999999999999999983 5799999999999999887632 36899999998763
No 108
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.80 E-value=1.8e-08 Score=85.76 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=60.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
+.+|||+|||+|.+++.+|.. ...|+|||+++.+++.|++|++.. +.+|+.++.+|+.+++... ...+|.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~------~~~~~~~~~~d~~~~~~~~--~~~~D~ 303 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQML------GLDNLSFAALDSAKFATAQ--MSAPEL 303 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHHhc--CCCCCE
Confidence 578999999999999999965 458999999999999999998775 5679999999998766431 123566
Q ss_pred hHhh
Q psy13087 136 CFAN 139 (170)
Q Consensus 136 i~~~ 139 (170)
++.+
T Consensus 304 vi~D 307 (374)
T TIGR02085 304 VLVN 307 (374)
T ss_pred EEEC
Confidence 6653
No 109
>KOG1270|consensus
Probab=98.80 E-value=5.4e-09 Score=84.26 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=38.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
+.+|||+|||.|-++..||+.. ..|+|||++++||+.|++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~ 131 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHK 131 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhh
Confidence 4679999999999999999984 67999999999999999983
No 110
>PRK14968 putative methyltransferase; Provisional
Probab=98.80 E-value=2.8e-08 Score=75.61 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=50.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC--eEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN--IACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~i~~d~~~~ 123 (170)
+.+|||+|||+|.++..++.. +.+++|+|+|+++++.+++++... ...+ +.++.+|..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~------~~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN------NIRNNGVEVIRSDLFEP 85 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc------CCCCcceEEEecccccc
Confidence 578999999999999999988 578999999999999999988664 3334 78888876543
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=98.79 E-value=1.1e-08 Score=83.58 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=49.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
..+|||+|||+|.++..++...+..+|+|+|+++.|++.|+++. +++.++++|+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----------~~v~~v~~D~~e~~ 122 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----------PEAEWITSDVFEFE 122 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------cCCEEEECchhhhc
Confidence 46899999999999999988876679999999999999987752 46888888887643
No 112
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.79 E-value=1.9e-08 Score=85.01 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=54.6
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
.+|||+|||+|.+++.+|+... .|+|||+++++++.|++|++.. +++|++++.+|+.++++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~------~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN------NIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc------CCCcEEEEEcCHHHHHH
Confidence 4799999999999999998863 7999999999999999998775 67799999999988764
No 113
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.78 E-value=2.1e-08 Score=82.87 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=42.4
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
..++.+|||+|||+|.+++.+++.. ..+|+|+|+++.+++.|++|++..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHT
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHc
Confidence 4557899999999999999999874 358999999999999999998764
No 114
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.78 E-value=2.9e-08 Score=82.80 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=48.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....... .....++.+..+|+.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEANDLE 207 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcchh
Confidence 579999999999999999986 468999999999999999987653100 001245777777754
No 115
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=2.3e-08 Score=86.65 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ 132 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~ 132 (170)
.++.+|||+|||+|..+..+|... +...|+++|+++.+++.+++++++. ++++++++.+|+.... . +..+.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------g~~~v~~~~~Da~~l~-~-~~~~~ 307 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------KLSSIEIKIADAERLT-E-YVQDT 307 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhhhh-h-hhhcc
Confidence 457899999999999999999875 4568999999999999999999886 6678999999987532 1 22445
Q ss_pred hhhhHh
Q psy13087 133 VRRCFA 138 (170)
Q Consensus 133 l~~i~~ 138 (170)
+|.|+.
T Consensus 308 fD~Vl~ 313 (431)
T PRK14903 308 FDRILV 313 (431)
T ss_pred CCEEEE
Confidence 777765
No 116
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.78 E-value=1.2e-08 Score=79.02 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=35.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
+.+|||||||+|.++..++... ...++|+|+++++++.|++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH
Confidence 5789999999999999998764 4678999999999988753
No 117
>PLN03075 nicotianamine synthase; Provisional
Probab=98.77 E-value=2.1e-08 Score=82.69 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=50.3
Q ss_pred CCeEEEEcCccch--HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH-HhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGG--LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA-LRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~--~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~-~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|+|||||.|. .++.++..+|+..++|+|+++++++.|++.++. . +..++|+|..+|+.+.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~-----gL~~rV~F~~~Da~~~ 189 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDP-----DLSKRMFFHTADVMDV 189 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhcc-----CccCCcEEEECchhhc
Confidence 5899999999884 344455678999999999999999999998854 2 2235699999998864
No 118
>KOG1540|consensus
Probab=98.77 E-value=2.7e-08 Score=80.02 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCC------CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhc--
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPS------TLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYL-- 124 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~------~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l-- 124 (170)
++.++||++||||.+++.+.+..+. .+|+++||+++|+..++++..+. ...+ .+.++.+|+++.-
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-----~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-----PLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-----CCCcCCceEEEeCCcccCCCC
Confidence 4689999999999999999998776 79999999999999999998664 2223 3899999998631
Q ss_pred c-------------CCC-chhhhhhhHhhhcCCccccchhhhcccc
Q psy13087 125 P-------------NYF-RKAQVRRCFANCILNSQYENIACIRTNA 156 (170)
Q Consensus 125 ~-------------~~f-~~~~l~~i~~~~~~~g~~~~~~~~~~~~ 156 (170)
. |+- ....+...|- .++||+.+-.....+..
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYR-VLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYR-VLKPGGRFSCLEFSKVE 219 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHH-hcCCCcEEEEEEccccc
Confidence 1 111 3445667776 78888865544444433
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.77 E-value=3.7e-08 Score=80.98 Aligned_cols=48 Identities=21% Similarity=0.348 Sum_probs=41.7
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
.++.+|||+|||+|.+++.+++. +..+|+|+|+++.+++.|++++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHc
Confidence 34689999999999999998875 3458999999999999999998764
No 120
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.77 E-value=2.4e-08 Score=79.17 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=48.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc------CCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ------NKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||+|||.|..+..||.. +.+|+|||+|+.+++.+.+........ ......+|++.++|+.+.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence 579999999999999999986 678999999999999875321100000 000124688999998865
No 121
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.75 E-value=3e-08 Score=84.11 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=55.0
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN 126 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~ 126 (170)
.+|||++||+|.+++.+|+.. ..|+|||+++.+++.|++|++.. +++|++++.+|+.++++.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~------~~~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAAN------GIDNVQIIRMSAEEFTQA 269 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHH
Confidence 479999999999999999875 37999999999999999998775 667999999999887654
No 122
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.75 E-value=1.4e-08 Score=87.01 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhcc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLP 125 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~ 125 (170)
++.+|||+|||+|.+++.++.. +...|++||+|+.+++.|++|++.. ++ ++++++++|+.+++.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N------gl~~~~v~~i~~D~~~~l~ 285 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN------KLDLSKAEFVRDDVFKLLR 285 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------CCCCCcEEEEEccHHHHHH
Confidence 4689999999999999887754 3458999999999999999999874 54 379999999988763
No 123
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.74 E-value=1.2e-08 Score=81.76 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=37.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
..+|||||||+|.++..++.. +..|+|+|+|+.|++.|+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC
Confidence 478999999999999998875 468999999999999998764
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=3.3e-08 Score=85.92 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
.++.+|||+|||+|..+..++...+ ...|+|+|+++.+++.++++++.. +++||.++.+|+....
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~v~~~~~Da~~~~ 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------GITIIETIEGDARSFS 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh------CCCeEEEEeCcccccc
Confidence 3468999999999999999988653 458999999999999999999886 6678999999987643
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=3e-08 Score=85.92 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKA 131 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~ 131 (170)
.++.+|||+|||+|..+..++...+ ...|+++|+++.+++.++++++.. +++||+++.+|+....... +..+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------GLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEEeCChhhcccccccccc
Confidence 3578999999999999999998753 458999999999999999999886 6778999999987643211 1234
Q ss_pred hhhhhHh
Q psy13087 132 QVRRCFA 138 (170)
Q Consensus 132 ~l~~i~~ 138 (170)
.+|.|+.
T Consensus 325 ~fD~Vl~ 331 (434)
T PRK14901 325 YFDRILL 331 (434)
T ss_pred cCCEEEE
Confidence 5666665
No 126
>PRK05785 hypothetical protein; Provisional
Probab=98.73 E-value=2e-08 Score=79.84 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
+.+|||||||+|.++..+++.+ +.+|+|+|+|++|++.|+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc
Confidence 4799999999999999999886 46899999999999998865
No 127
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.72 E-value=4e-08 Score=82.65 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=49.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|.++..+++..+..+++|+|+|++|++.|+++.. ..++.++.+|+.+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---------~~~i~~i~gD~e~ 171 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LKECKIIEGDAED 171 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---------ccCCeEEeccHHh
Confidence 579999999999999999988877899999999999999988753 2467778777764
No 128
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.72 E-value=3.8e-08 Score=79.37 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=49.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..++...+ .++|+|+++.++..++++.. ..+++.++++|+...
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~--------~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS--------LYERLEVIEGDALKV 87 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC--------cCCcEEEEECchhcC
Confidence 57999999999999999999875 49999999999999987653 236899999998753
No 129
>PRK01581 speE spermidine synthase; Validated
Probab=98.72 E-value=1.4e-08 Score=85.91 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=52.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH--HHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR--VAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~--~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
..+||+||||+|..+..+.+..+..++++||+++++++.|++. +...... .-..++++++.+|+.+++.
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~-~~~DpRV~vvi~Da~~fL~ 221 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKS-AFFDNRVNVHVCDAKEFLS 221 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccc-cCCCCceEEEECcHHHHHH
Confidence 5799999999999998888765556899999999999999962 1111000 0023689999999998764
No 130
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.71 E-value=1.2e-08 Score=79.43 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=46.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
-.++||+|||.|.++..||.++. .++++|+|+.+++.|++++.. .+||.++++|+.+..+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWP 103 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---
T ss_pred cceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCC
Confidence 36899999999999999999963 699999999999999999753 4799999999877644
No 131
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.71 E-value=4.6e-08 Score=81.80 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=52.1
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++..|||+|||+|.+++.++.. +..++|+|+++.|+..|++|++.. +.+++.++.+|+..
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~------g~~~i~~~~~D~~~ 241 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY------GIEDFFVKRGDATK 241 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh------CCCCCeEEecchhc
Confidence 3679999999999999998765 568999999999999999998876 55678888898875
No 132
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.70 E-value=1.5e-07 Score=78.53 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=44.5
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|||||||+|.++..++...+ ..|+|||.|+.|+..++...+.. ....++.++.+++.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~-----~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL-----DNDKRAILEPLGIEQ 182 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh-----ccCCCeEEEECCHHH
Confidence 368999999999999999998765 37999999999987754332221 112456666665543
No 133
>KOG2904|consensus
Probab=98.70 E-value=6.2e-08 Score=78.72 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=49.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACI 116 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i 116 (170)
+.++||+|||+|.+++.++...|.+.|++||.|+.++..|.+|++.+. ..+.+.++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~-----l~g~i~v~ 204 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK-----LSGRIEVI 204 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh-----hcCceEEE
Confidence 568999999999999999999999999999999999999999998872 23445555
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.69 E-value=8.5e-08 Score=77.93 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+++.+|||+|||+|..+..+|...+ ...|+++|+++.+++.++++++.. ++.||.++..|+...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~ 134 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC------GVLNVAVTNFDGRVF 134 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEecCCHHHh
Confidence 3468999999999999999998764 358999999999999999999886 667899999997653
No 135
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.69 E-value=5e-08 Score=81.49 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=47.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEE
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIR 117 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~ 117 (170)
++.++||||||+|.+...++...++.+++|+||++.+++.|+++++.. ..+ ++|.+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-----p~l~~~I~~~~ 172 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-----PGLNGAIRLRL 172 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-----cCCcCcEEEEE
Confidence 357999999999998888888878889999999999999999999763 023 3577653
No 136
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.68 E-value=3.4e-08 Score=90.27 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=54.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhcc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYLP 125 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l~ 125 (170)
++.+|||+|||+|.+++.+|.. +...|++||+|+.+++.|++|++.. +++ +++++++|+.+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~n------g~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALN------GLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh------CCCccceEEEEccHHHHHH
Confidence 4689999999999999999986 3347999999999999999999775 443 79999999987653
No 137
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.68 E-value=5.1e-08 Score=65.21 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=48.5
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+++|+|||.|.++..++. .+..+++++|+++.++..+++.... ....++.++..|+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAA------LLADNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhc------ccccceEEEEcChhhhc
Confidence 489999999999999998 5567999999999999998854332 23467888888887654
No 138
>PLN02366 spermidine synthase
Probab=98.67 E-value=4.2e-08 Score=81.59 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
...+||+||||.|.++.++++..+..+|+.||+++++++.|++........ -.-++++++.+|+..++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--FDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--cCCCceEEEEChHHHHHh
Confidence 357999999999999999987633358999999999999999987543100 022579999999877653
No 139
>PTZ00146 fibrillarin; Provisional
Probab=98.66 E-value=5.5e-08 Score=80.11 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.++.+|||||||+|.++..+|.... ...|++||+++.+.+...+.+.. .+||.++.+|+.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~ 191 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDAR 191 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCcc
Confidence 45678999999999999999999863 45899999999876555544432 157888888875
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=98.65 E-value=3.8e-08 Score=78.77 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=46.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC---CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF---PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~---p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||+|||+|.+++.+++.. +..+|+|||+++.+++.|+++. .++.++++|+..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----------~~~~~~~~D~~~ 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----------PEATWINADALT 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----------cCCEEEEcchhc
Confidence 4799999999999999999864 3568999999999999999764 357777788764
No 141
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.65 E-value=4.6e-08 Score=76.12 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=50.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||+|||+|.++..+++..+. .+++|+|+++.++..++++.. ...++.++.+|+.+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------LPLNIEFIQADAEAL 100 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------cCCCceEEecchhcC
Confidence 579999999999999999999875 689999999999999988763 124678887777653
No 142
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.60 E-value=7.4e-08 Score=84.02 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=45.9
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.+|||||||+|.++..+++.. .+|+|+|++++|++.+++.. +..+|+.++.+|+.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--------~~~~~i~~~~~d~~ 93 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--------GHYKNVKFMCADVT 93 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--------ccCCceEEEEeccc
Confidence 5789999999999999999884 47999999999998775432 13467888888875
No 143
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.59 E-value=1.3e-07 Score=76.86 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=36.1
Q ss_pred CCeEEEEcCccch----HHHHHhhhCC-----CCeEEEEECCHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGG----LLVTLSPMFP-----STLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 56 ~~~vLDiGCG~G~----~~~~la~~~p-----~~~v~GvDis~~~i~~a~~~~ 99 (170)
+.+|+|+|||+|. +++.+++..+ +..|+|+|+|+.|++.|++.+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 4699999999997 5556666544 468999999999999999864
No 144
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.59 E-value=1.2e-07 Score=74.22 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=56.6
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQV 133 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l 133 (170)
.++..|+|+-||-|.|++.+|+..+...|+++|++|.+++..+++++.. +...+|.++++|+.++++ ...+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-----kv~~~i~~~~~D~~~~~~----~~~~ 170 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-----KVENRIEVINGDAREFLP----EGKF 170 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEES-GGG-------TT-E
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-----CCCCeEEEEcCCHHHhcC----cccc
Confidence 4578999999999999999999766778999999999999999999874 223458899999998765 5566
Q ss_pred hhhHhhhcC
Q psy13087 134 RRCFANCIL 142 (170)
Q Consensus 134 ~~i~~~~~~ 142 (170)
|++..+.|.
T Consensus 171 drvim~lp~ 179 (200)
T PF02475_consen 171 DRVIMNLPE 179 (200)
T ss_dssp EEEEE--TS
T ss_pred CEEEECChH
Confidence 677665444
No 145
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.58 E-value=1.1e-07 Score=77.52 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=51.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+.+||+||||+|.++..+++..+..+++++|+++++++.|++........ -..++++++.+|+..++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~--~~~~~v~i~~~D~~~~l 139 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS--YDDPRVDLQIDDGFKFL 139 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc--ccCCceEEEECchHHHH
Confidence 46999999999999999887755568999999999999999887543100 01256888888887654
No 146
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.58 E-value=2.3e-07 Score=67.79 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=50.2
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
.++|||||.|.++..++..++..+++++|.++.+++.++++++.. +.+|+.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n------~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN------NLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEEeeee
Confidence 489999999999999999988889999999999999999998764 5567887776544
No 147
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.5e-07 Score=75.67 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhccCCCch
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYLPNYFRK 130 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l~~~f~~ 130 (170)
+.++.+|+|.|.|+|.++.+||.. .|..+|+.+|+.++.++.|++|+++. ++.| |.+..+|+.+... .
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~------~l~d~v~~~~~Dv~~~~~----~ 161 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF------GLGDRVTLKLGDVREGID----E 161 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh------ccccceEEEecccccccc----c
Confidence 567899999999999999999974 56679999999999999999999987 4444 9998898887542 2
Q ss_pred hhhhhhHhhhcCCc
Q psy13087 131 AQVRRCFANCILNS 144 (170)
Q Consensus 131 ~~l~~i~~~~~~~g 144 (170)
+.+|.+|+-.|.|+
T Consensus 162 ~~vDav~LDmp~PW 175 (256)
T COG2519 162 EDVDAVFLDLPDPW 175 (256)
T ss_pred cccCEEEEcCCChH
Confidence 25666665555554
No 148
>PRK03612 spermidine synthase; Provisional
Probab=98.57 E-value=5.5e-08 Score=86.11 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=51.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHH--HHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDR--VAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~--~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
+.+|||||||+|..+.++++. +. .++++||+++++++.|+++ ........ -..++++++.+|+.+++.
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~-~~dprv~vi~~Da~~~l~ 368 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGA-LDDPRVTVVNDDAFNWLR 368 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccc-cCCCceEEEEChHHHHHH
Confidence 578999999999999999875 54 6999999999999999984 22221000 012579999999988764
No 149
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.56 E-value=2.4e-07 Score=72.70 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+.+|||||||+|.++..++... ..++|+|+++.+++.+++++... ...++.+...|+.+..
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~ 106 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD------PLLKIEYRCTSVEDLA 106 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhh
Confidence 5799999999999999998864 46999999999999999887653 3336888888776543
No 150
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.55 E-value=2.1e-07 Score=80.49 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAM 121 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~ 121 (170)
.++.+|||+|||+|..+..++...+...++|+|+++++++.+++++++. +.+ ++.++.+|..
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~------g~~~~v~~~~~d~~ 299 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL------GLTIKAETKDGDGR 299 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeccccc
Confidence 4578999999999999999999877679999999999999999999875 443 2333555554
No 151
>KOG1541|consensus
Probab=98.54 E-value=6.1e-08 Score=76.62 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=36.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
...|||||||+|..+..+... +..++|||||+.|++.|.++
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER 91 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh
Confidence 578999999999999998876 46799999999999999973
No 152
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.54 E-value=3.6e-07 Score=73.73 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh-ccCCCch
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY-LPNYFRK 130 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~-l~~~f~~ 130 (170)
+.++.+|||-|+|+|.++..+|+. .|..+|+..|++++.++.|+++++.. +..+||.+.+.|+.+. ...- .+
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-----gl~~~v~~~~~Dv~~~g~~~~-~~ 111 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-----GLDDNVTVHHRDVCEEGFDEE-LE 111 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-----TCCTTEEEEES-GGCG--STT--T
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-----CCCCCceeEecceeccccccc-cc
Confidence 356899999999999999999975 57789999999999999999999986 3335899999998632 2111 13
Q ss_pred hhhhhhHhhhcCCcc
Q psy13087 131 AQVRRCFANCILNSQ 145 (170)
Q Consensus 131 ~~l~~i~~~~~~~g~ 145 (170)
..+|.+|+-.|.|+.
T Consensus 112 ~~~DavfLDlp~Pw~ 126 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWE 126 (247)
T ss_dssp TSEEEEEEESSSGGG
T ss_pred CcccEEEEeCCCHHH
Confidence 567888887777764
No 153
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.1e-07 Score=80.58 Aligned_cols=76 Identities=18% Similarity=0.306 Sum_probs=64.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVR 134 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~ 134 (170)
+++++||+=||.|.|++.+|+.. .+|+|||+++++++.|++|++.. +.+|++|+.+++.++...+-.....+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n------~i~N~~f~~~~ae~~~~~~~~~~~~d 364 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAAN------GIDNVEFIAGDAEEFTPAWWEGYKPD 364 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHHhhhccccCCCC
Confidence 46799999999999999999774 57999999999999999999885 78899999999999876654334455
Q ss_pred hhHh
Q psy13087 135 RCFA 138 (170)
Q Consensus 135 ~i~~ 138 (170)
.|++
T Consensus 365 ~Vvv 368 (432)
T COG2265 365 VVVV 368 (432)
T ss_pred EEEE
Confidence 5555
No 154
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.49 E-value=2.9e-07 Score=78.66 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=55.4
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
.+|||++||+|.+++.+|...+...|+++|+++.+++.+++|++.. +++++.+.++|+...+.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N------~~~~~~v~~~Da~~~l~ 121 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN------GLENEKVFNKDANALLH 121 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCceEEEhhhHHHHHh
Confidence 5899999999999999998876558999999999999999999775 66788899999987654
No 155
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=3.9e-07 Score=73.85 Aligned_cols=59 Identities=24% Similarity=0.461 Sum_probs=51.4
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++..|||||+|.|.++..|++.. ..|++||+++.++...++... ..+|+.++++|+..+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--------~~~n~~vi~~DaLk~ 88 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA--------PYDNLTVINGDALKF 88 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc--------cccceEEEeCchhcC
Confidence 36899999999999999999995 459999999999999988864 247999999999875
No 156
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.47 E-value=2.6e-07 Score=78.11 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=48.2
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
..|||+-||.|.+++.+|... ..|+|||+++++++.|++|++.. +++|++|+.+++.++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N------~i~n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLN------GIDNVEFIRGDAEDFA 257 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHT------T--SEEEEE--SHHCC
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHc------CCCcceEEEeeccchh
Confidence 379999999999999999985 46999999999999999999874 7899999998887654
No 157
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.47 E-value=4.9e-07 Score=74.76 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=53.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+..+||.+||.|.++..+++..+ +..|+|+|+++++++.|++++.. .++++++++|..++.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLK 81 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHH
Confidence 57999999999999999999985 67999999999999999987632 358999999988753
No 158
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.47 E-value=3.6e-07 Score=71.91 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=30.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRV 89 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~ 89 (170)
++.+|||||||+|.++..+++.. +...|+|||+++
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 36799999999999999999886 346899999997
No 159
>KOG2187|consensus
Probab=98.46 E-value=1.4e-07 Score=82.13 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY 127 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~ 127 (170)
+..+..+||+.||||.+++.+|+.. ..|+|||+++++++.|++|++.. +..|.+|+.+-+++.++..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~N------gisNa~Fi~gqaE~~~~sl 447 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQIN------GISNATFIVGQAEDLFPSL 447 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhc------Cccceeeeecchhhccchh
Confidence 3456899999999999999999885 46999999999999999998874 8899999999787766544
No 160
>PRK04148 hypothetical protein; Provisional
Probab=98.44 E-value=7.2e-07 Score=65.60 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=41.9
Q ss_pred CCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|||||||+|. ++..|++. +..|+|+|+++.+++.|+++ .+.++.+|..+
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~ 69 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFN 69 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------------CCeEEECcCCC
Confidence 4789999999996 88888876 56899999999998887654 25666677664
No 161
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.41 E-value=7e-07 Score=65.82 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=53.7
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhh---cCCCCCCCeEEEE-cchhhhccCCCch
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRS---QNKGQYENIACIR-TNAMKYLPNYFRK 130 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~---~~~~~~~nv~~i~-~d~~~~l~~~f~~ 130 (170)
++.+|||||||+|.++..++... .+++|+|+++.+++. .+...... .....-....++. .++..++++ +.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d--~~ 95 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD--PE 95 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH--HH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc--HH
Confidence 36899999999999999997763 489999999999887 10000000 0000012333332 244455553 45
Q ss_pred hhhhhhHhhhcCCccccch
Q psy13087 131 AQVRRCFANCILNSQYENI 149 (170)
Q Consensus 131 ~~l~~i~~~~~~~g~~~~~ 149 (170)
..+..++. +++|||+.-+
T Consensus 96 ~~l~~l~~-~LkpgG~l~~ 113 (161)
T PF13489_consen 96 EFLKELSR-LLKPGGYLVI 113 (161)
T ss_dssp HHHHHHHH-CEEEEEEEEE
T ss_pred HHHHHHHH-hcCCCCEEEE
Confidence 55666666 6788876443
No 162
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.39 E-value=5.9e-07 Score=69.09 Aligned_cols=76 Identities=22% Similarity=0.247 Sum_probs=56.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCe---------EEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTL---------ILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN 126 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~---------v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~ 126 (170)
+..|||--||+|.++++.|...++.. ++|.|+++++++.|++|++.. +....|.+.+.|+...-
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-----g~~~~i~~~~~D~~~l~-- 101 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-----GVEDYIDFIQWDARELP-- 101 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----T-CGGEEEEE--GGGGG--
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----ccCCceEEEecchhhcc--
Confidence 57999999999999999999877766 899999999999999999876 23345889998988643
Q ss_pred CCchhhhhhhHhh
Q psy13087 127 YFRKAQVRRCFAN 139 (170)
Q Consensus 127 ~f~~~~l~~i~~~ 139 (170)
+..++++.|..+
T Consensus 102 -~~~~~~d~Ivtn 113 (179)
T PF01170_consen 102 -LPDGSVDAIVTN 113 (179)
T ss_dssp -GTTSBSCEEEEE
T ss_pred -cccCCCCEEEEC
Confidence 333445555543
No 163
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.38 E-value=5.4e-07 Score=69.35 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKV 91 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~ 91 (170)
++.+|||||||+|.++..++... +..+++|+|+++.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 46899999999999999999876 45689999999864
No 164
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.36 E-value=1.3e-06 Score=64.41 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=48.8
Q ss_pred CCeEEEEcCccchHHHHHhh-----hCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSP-----MFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~-----~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
...|+|+|||.|.++..++. . ++..|+|||.++..++.|.++.+..... .-.++.+..++..
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSD---LEKRLSFIQGDIA 92 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcch---hhccchhhccchh
Confidence 57999999999999999998 4 6789999999999999999998776210 1145666655544
No 165
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.36 E-value=1.8e-06 Score=68.23 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=47.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+|||||||+|.++..+++. ..+++|+|+++.++..|+++.... .. ++.++.+|+...
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~------~~-~~~~~~~~~~~~ 107 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES------GL-KIDYRQTTAEEL 107 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc------CC-ceEEEecCHHHh
Confidence 578999999999999999886 467999999999999999887653 22 567777666554
No 166
>KOG2899|consensus
Probab=98.30 E-value=9.5e-07 Score=70.77 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=43.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
+..+|||||-+|.+++.+|+.+....++|+||++..|..|+++++.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 5789999999999999999999888999999999999999999764
No 167
>KOG3191|consensus
Probab=98.28 E-value=1.9e-06 Score=66.32 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=55.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVR 134 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~ 134 (170)
...++|||||+|..+..+++.. |++.+.+.||++.+.+...+-++.. . -++..+++|....+.+ +++|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n------~-~~~~~V~tdl~~~l~~----~~VD 112 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN------R-VHIDVVRTDLLSGLRN----ESVD 112 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc------C-CccceeehhHHhhhcc----CCcc
Confidence 4689999999999999998864 6789999999999999888777653 2 3577888888776643 4444
Q ss_pred hhHh
Q psy13087 135 RCFA 138 (170)
Q Consensus 135 ~i~~ 138 (170)
.+.+
T Consensus 113 vLvf 116 (209)
T KOG3191|consen 113 VLVF 116 (209)
T ss_pred EEEE
Confidence 4444
No 168
>KOG1499|consensus
Probab=98.27 E-value=2.2e-06 Score=71.72 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=50.6
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~ 123 (170)
+++.|||+|||+|.+++..|+.. ..+|+|||-|.-+ +.|.+.+... ++.+ |+++++.+.+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N------~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDN------GLEDVITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhc------CccceEEEeecceEEE
Confidence 36899999999999999999986 4699999988766 8888887764 5666 88888887764
No 169
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.25 E-value=3e-06 Score=70.06 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=35.6
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
++.+|||||||.|.++..|+...+ ..|+|||-+...+...+.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHH
Confidence 378999999999999999999865 489999999887666443
No 170
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.23 E-value=4.2e-07 Score=72.37 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=36.9
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
-.++||||||||-++..+-.+. .+++|||||+.|+++|.++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred cceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhc
Confidence 4799999999999999998884 3599999999999999887
No 171
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.21 E-value=3e-06 Score=67.62 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=49.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH------HHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA------ALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~------~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.+||+.|||.|.-+.+||.. +..|+|+|+|+.+|+.+.+... ..+........+|+++++|+.+.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 579999999999999999988 5679999999999999866321 00000000124789999998875
No 172
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.14 E-value=8.9e-06 Score=63.98 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=46.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc---CCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ---NKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~---~~~~~~nv~~i~~d~~~ 122 (170)
++..++|||||.|...+.+|..++-...+|||+.+...+.|+...+..+.. .+-....+.+.++|..+
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 468999999999999999998876556999999999999998776554321 11123468888888654
No 173
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.14 E-value=9.9e-06 Score=64.51 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=47.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
..+|||||+|.|.++..+++.+|+.+++.+|+ |+.++.+++ . ++|+++.+|..+.+|
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~--------~rv~~~~gd~f~~~P 157 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----A--------DRVEFVPGDFFDPLP 157 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----T--------TTEEEEES-TTTCCS
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----c--------cccccccccHHhhhc
Confidence 46899999999999999999999999999998 888888776 1 579999999876554
No 174
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.13 E-value=5.1e-06 Score=66.35 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDY 94 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~ 94 (170)
++.+|||+|||+|.++..+++. +...|+|||+++.|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 3678999999999999999987 34589999999988775
No 175
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.11 E-value=2.4e-05 Score=60.54 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=53.6
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+++|||+|.|.=++-+|-.+|+.+++.+|.+.+-+...+.-+.++ +++|++++++.+.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL------GLSNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH------T-SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh------CCCCEEEEEeeecc
Confidence 799999999999999999999999999999999999999999888 78999999999988
No 176
>KOG3010|consensus
Probab=98.09 E-value=1.7e-06 Score=69.24 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=36.4
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
..++|+|||+|.-++.+|..+. +|+|+|+|++|++.|++.-
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHP 75 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCC
Confidence 4899999999998999998865 4999999999999998764
No 177
>PLN02823 spermine synthase
Probab=98.09 E-value=5.2e-06 Score=69.88 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=53.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
..+||.||+|.|..+.++.+..+..+++.||+++++++.|++........ -..++++++.+|+..++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~dprv~v~~~Da~~~L~ 171 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCDKRLELIINDARAELE 171 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccCCceEEEEChhHHHHh
Confidence 46899999999999999888655568999999999999999876431000 013679999999988764
No 178
>KOG2730|consensus
Probab=98.08 E-value=1.5e-06 Score=68.70 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=61.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKAQVR 134 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~~l~ 134 (170)
.+.|+|.=||-|..++..|..+|. |++|||++.-+..|++|++-. |--++|.|+++|..+....+ |.+.-++
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiY-----GI~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVY-----GVPDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceee-----cCCceeEEEechHHHHHHHHhhhhheee
Confidence 478999999999999999999765 999999999999999998876 44457999999998765433 4444444
Q ss_pred hhHh
Q psy13087 135 RCFA 138 (170)
Q Consensus 135 ~i~~ 138 (170)
.+|.
T Consensus 168 ~vf~ 171 (263)
T KOG2730|consen 168 CVFL 171 (263)
T ss_pred eeec
Confidence 5554
No 179
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.07 E-value=1.5e-05 Score=61.66 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
+.++||+=+|+|.++++++.+.. ..++.||.+.+++...++|++.+ +...+++++..|+..++...-..+.+|.
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l-----~~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKAL-----GLEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHh-----CCccceEEEeecHHHHHHhcCCCCcccE
Confidence 68999999999999999998854 58999999999999999999887 3346799999999977654333334565
Q ss_pred hHh
Q psy13087 136 CFA 138 (170)
Q Consensus 136 i~~ 138 (170)
||+
T Consensus 118 Vfl 120 (187)
T COG0742 118 VFL 120 (187)
T ss_pred EEe
Confidence 554
No 180
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.03 E-value=1.8e-05 Score=66.46 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=36.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
++.+|||||||.|.-+........ ..++|+||+.+.|+.|+++.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHh
Confidence 468999999998886666666533 48999999999999999998554
No 181
>KOG0820|consensus
Probab=98.03 E-value=1.9e-05 Score=64.29 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+.+.+.|||+|-|||.++..|.+. +.+|+++|+++.|+....++.+.. .....++++.||.....
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt-----p~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT-----PKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC-----CccceeeEEecccccCC
Confidence 456799999999999999999988 467999999999999998887543 11246999999998754
No 182
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.02 E-value=1.2e-05 Score=65.30 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=50.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++..|||||.|.|.++..+++.. .++++||+++.++...+++.. ..+|++++.+|+...
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--------~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--------SNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--------TCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--------hcccceeeecchhcc
Confidence 36899999999999999999986 689999999999998887643 247899999998864
No 183
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.00 E-value=2.6e-05 Score=60.27 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~ 125 (170)
+.++||+-||+|.+++++..+. ...|+.||.++.++...++|++.. +.. ++.++.+|+...+.
T Consensus 43 g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l------~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKL------GLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH------T-GGGEEEEESSHHHHHH
T ss_pred CCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHh------CCCcceeeeccCHHHHHH
Confidence 6899999999999999988774 358999999999999999999987 333 59999999887663
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.97 E-value=3.2e-05 Score=67.46 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=46.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~ 123 (170)
...|+|||||+|.+....++.. ...+|++||.++.++...+++++.. +. ++|+++++|..+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n------~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN------GWGDKVTVIHGDMREV 253 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT------TTTTTEEEEES-TTTS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc------CCCCeEEEEeCcccCC
Confidence 4689999999999987665543 3469999999999998877775553 33 6799999998865
No 185
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.97 E-value=2.2e-05 Score=59.98 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=40.7
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~ 120 (170)
++.+|||||||+|..++.+|+..+...|+..|.++ .+...+.|++.... ....++.+...|.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~W 106 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDW 106 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--T
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEe
Confidence 36899999999999999999986667999999999 99999999876310 0234567666554
No 186
>KOG1975|consensus
Probab=97.97 E-value=2.1e-05 Score=65.47 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++...++|+|||.|.-++..-+.. -..++|+||.+..|+.|+++.+.+......-.=.+.|+.+|...
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 346889999999999777766553 23799999999999999999877633211111236788887653
No 187
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.95 E-value=1.5e-05 Score=63.28 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=47.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH-hh-c----CCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL-RS-Q----NKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~-~~-~----~~~~~~nv~~i~~d~~~~ 123 (170)
+.+||..|||.|.-+..||.. +.+|+|+|+|+.+++.+.+..... .. . ......+|++..+|+...
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 569999999999999999987 578999999999999985442210 00 0 001224789999998874
No 188
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.93 E-value=7.4e-05 Score=61.51 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCC--CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCe-EEEEcchhhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPS--TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENI-ACIRTNAMKY 123 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~--~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~i~~d~~~~ 123 (170)
.+.-+||||.||.|.+.+.+...+|. ..+.-.|.|+..|+..++.+++. ++.++ +|.++|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~------gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER------GLEDIARFEQGDAFDR 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc------CCccceEEEecCCCCH
Confidence 34679999999999999999999986 68999999999999999999886 77776 9999998864
No 189
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.91 E-value=1.4e-05 Score=62.12 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=52.2
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
..+.|+|+|+|.+++-+|+. .-+|++||.++...+.|.+|+.- +++.|+.++.+|+..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v------~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHV------PGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCC------CCCcceEEEecccccc
Confidence 68999999999999998887 34799999999999999999744 4788999999999875
No 190
>KOG1663|consensus
Probab=97.91 E-value=1.4e-05 Score=63.47 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=82.5
Q ss_pred CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCC---ch
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF---RK 130 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f---~~ 130 (170)
..+++||||.=||..++..|...| +.+|+++|++++..+.+.+..+.. +....|.++++.+.+.|+... ..
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-----gv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-----GVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-----cccceeeeeecchhhhHHHHHhcCCC
Confidence 368999999988888888888876 459999999999999998877765 455679999999988775443 45
Q ss_pred hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhc
Q psy13087 131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKA 167 (170)
Q Consensus 131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~ 167 (170)
+.+|.+|+- ..+--|.| +.+++-++.++.+|..-+|
T Consensus 148 ~tfDfaFvD-adK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 148 GTFDFAFVD-ADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred CceeEEEEc-cchHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 667777763 33344444 6888888888888876655
No 191
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.91 E-value=4.2e-05 Score=65.31 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=54.8
Q ss_pred CeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
.+|||+-||+|..++.++...++ ..|+++|+++++++.+++|++.. ...++.++++|+...+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N------~~~~~~v~~~Da~~~l~ 109 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN------SVENIEVPNEDAANVLR 109 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEchhHHHHHH
Confidence 58999999999999999987533 48999999999999999999775 56689999999987764
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.84 E-value=8.4e-05 Score=65.24 Aligned_cols=77 Identities=8% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ 132 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~ 132 (170)
+++.+|||+|||.|.=+..+|.... ...++++|+++..+...+++++++ ++.||.+...|+.... ..+ ++.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~------G~~nv~v~~~D~~~~~-~~~-~~~ 183 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC------GVSNVALTHFDGRVFG-AAL-PET 183 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCchhhhh-hhc-hhh
Confidence 4578999999999999999998764 358999999999999999999987 7789999999987532 222 234
Q ss_pred hhhhHh
Q psy13087 133 VRRCFA 138 (170)
Q Consensus 133 l~~i~~ 138 (170)
+|+|+.
T Consensus 184 fD~ILv 189 (470)
T PRK11933 184 FDAILL 189 (470)
T ss_pred cCeEEE
Confidence 666665
No 193
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.83 E-value=6.6e-05 Score=68.90 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=51.5
Q ss_pred CCeEEEEcCccchHHHHHhhhCC------------------------------------------CCeEEEEECCHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP------------------------------------------STLILGLEIRVKVSD 93 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p------------------------------------------~~~v~GvDis~~~i~ 93 (170)
+..++|-+||+|.+++++|.... ...++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 57899999999999999987411 136999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 94 YVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
.|++|+... +..+.|.+.++|+.+.
T Consensus 271 ~A~~N~~~~-----g~~~~i~~~~~D~~~~ 295 (702)
T PRK11783 271 AARKNARRA-----GVAELITFEVKDVADL 295 (702)
T ss_pred HHHHHHHHc-----CCCcceEEEeCChhhc
Confidence 999999886 2224589999998764
No 194
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=7.5e-05 Score=59.14 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=68.5
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc--C-C-----
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP--N-Y----- 127 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~--~-~----- 127 (170)
+.+++|||+|.|.=++-+|-.+|+.+|+-+|...+-+...+.-..++ +++|++++++.++++-. . |
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL------~L~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL------GLENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh------CCCCeEEehhhHhhcccccccCcEEEe
Confidence 47999999999999999999999999999999999999999988888 78999999999988653 1 2
Q ss_pred ---CchhhhhhhHhhhcCCccc
Q psy13087 128 ---FRKAQVRRCFANCILNSQY 146 (170)
Q Consensus 128 ---f~~~~l~~i~~~~~~~g~~ 146 (170)
-+-..+.......+++|+.
T Consensus 142 RAva~L~~l~e~~~pllk~~g~ 163 (215)
T COG0357 142 RAVASLNVLLELCLPLLKVGGG 163 (215)
T ss_pred ehccchHHHHHHHHHhcccCCc
Confidence 1333455555556666553
No 195
>KOG4300|consensus
Probab=97.78 E-value=3.3e-05 Score=60.80 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=46.9
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeE-EEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIA-CIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~i~~d~~~ 122 (170)
..|||||||+|..-..+- .-|...|+++|-++.|-+.|.+.+++. ...++. |+.++...
T Consensus 78 ~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~------k~~~~~~fvva~ge~ 137 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEK------KPLQVERFVVADGEN 137 (252)
T ss_pred cceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhc------cCcceEEEEeechhc
Confidence 468999999999876654 337789999999999999999998774 334555 77777765
No 196
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=5.7e-05 Score=63.60 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhccCCCchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYLPNYFRKAQ 132 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l~~~f~~~~ 132 (170)
..+.+|||.=+|-|.|++.+|+... ..|+++||+|.++++.++|++.. ...+ |..+++|+....+.. +.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN------~v~~~v~~i~gD~rev~~~~---~~ 256 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLN------KVEGRVEPILGDAREVAPEL---GV 256 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhc------CccceeeEEeccHHHhhhcc---cc
Confidence 4489999999999999999998853 34999999999999999999774 5555 899999999877543 55
Q ss_pred hhhhHhhhcC
Q psy13087 133 VRRCFANCIL 142 (170)
Q Consensus 133 l~~i~~~~~~ 142 (170)
.|+|+.+++.
T Consensus 257 aDrIim~~p~ 266 (341)
T COG2520 257 ADRIIMGLPK 266 (341)
T ss_pred CCEEEeCCCC
Confidence 6666665544
No 197
>KOG1661|consensus
Probab=97.69 E-value=0.00013 Score=57.54 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhh----cCCCCCCCeEEEEcchhhhcc
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRS----QNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~----~~~~~~~nv~~i~~d~~~~l~ 125 (170)
++++.+.||||+|+|.++..++... ++...+|||.-++.|+++++++++.-. ...-...++.++.+|.....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 4568999999999999999999764 344559999999999999999876411 001123468888888876544
No 198
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.66 E-value=0.00024 Score=55.86 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=50.8
Q ss_pred EEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
|.||||--|.+.++|.+...-..++++|+++.-++.|+++++.. +..+.|.+..+|..+.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-----~l~~~i~~rlgdGL~~l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-----GLEDRIEVRLGDGLEVLK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-----T-TTTEEEEE-SGGGG--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCcccEEEEECCcccccC
Confidence 68999999999999999976568999999999999999999886 334679999999877653
No 199
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.64 E-value=5.5e-05 Score=63.60 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=50.0
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc-chhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT-NAMK 122 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~-d~~~ 122 (170)
.++..|||==||||.+++++... +++++|.|++..|++-|+.|++.. +.+...++.. |+..
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y------~i~~~~~~~~~Da~~ 257 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYY------GIEDYPVLKVLDATN 257 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhh------CcCceeEEEeccccc
Confidence 34789999999999999998877 678999999999999999999887 3445545544 6553
No 200
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.60 E-value=9.4e-05 Score=59.67 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=52.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN 126 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~ 126 (170)
..+||=||-|.|..+.++.+..+..+++.||+++.+++.|++-....... -.-++++++.+|+..++.+
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~ 145 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKE 145 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHT
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHh
Confidence 57999999999999999997765568999999999999999876543110 0136799999998887753
No 201
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.60 E-value=8.2e-05 Score=63.82 Aligned_cols=64 Identities=9% Similarity=0.124 Sum_probs=55.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhccC
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLPN 126 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~~ 126 (170)
+++|||+=|=||.+++.+|... ..+|++||+|..+++.|++|.+-. ++ ..+.++++|+.+++..
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LN------g~~~~~~~~i~~Dvf~~l~~ 283 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELN------GLDGDRHRFIVGDVFKWLRK 283 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhc------CCCccceeeehhhHHHHHHH
Confidence 7899999999999999999763 338999999999999999998764 43 4588999999998754
No 202
>KOG1500|consensus
Probab=97.59 E-value=0.0002 Score=60.30 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=48.5
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+..|||+|||+|.+++.+|... ..+|++||-| +|.++|++-++.. +..++|.+|.+-+++.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N-----~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASN-----NLADRITVIPGKIEDI 238 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcC-----CccceEEEccCccccc
Confidence 5799999999999999988875 4589999976 5778888877653 3446788888877654
No 203
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.47 E-value=0.00019 Score=63.63 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=40.9
Q ss_pred CCeEEEEcCccchHHHHHhhhCC--------CCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP--------STLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p--------~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
..+|||.|||+|.+++.++...+ ..+++|+|+++.++..|+.++...
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 46899999999999999988764 257999999999999999988664
No 204
>PRK10742 putative methyltransferase; Provisional
Probab=97.44 E-value=0.00048 Score=55.64 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=60.6
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCC-CC-C-CCeEEEEcchhhhccCCCchhhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK-GQ-Y-ENIACIRTNAMKYLPNYFRKAQV 133 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~-~~-~-~nv~~i~~d~~~~l~~~f~~~~l 133 (170)
++|||+=+|+|..++.+|.. ++.|+++|.++.+....+++++....... +. + .+++++++|+.++|... ..++
T Consensus 90 p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~f 165 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRP 165 (250)
T ss_pred CEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCC
Confidence 49999999999999999988 56799999999999999999887421100 11 1 57999999999998652 2256
Q ss_pred hhhHh
Q psy13087 134 RRCFA 138 (170)
Q Consensus 134 ~~i~~ 138 (170)
|.||+
T Consensus 166 DVVYl 170 (250)
T PRK10742 166 QVVYL 170 (250)
T ss_pred cEEEE
Confidence 66665
No 205
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.44 E-value=0.0004 Score=57.55 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=38.4
Q ss_pred CCeEEEEcCccchHH-HHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcc
Q psy13087 56 KVEFVDVGCGYGGLL-VTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~-~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d 119 (170)
.-++||||||.-.+- +..++.+ +.+++|.||++..++.|+++++.. ++.-++|+++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N----~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERN----PNLESRIELRKQK 162 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEE--
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhc----cccccceEEEEcC
Confidence 468999999998764 4444444 799999999999999999999763 1123468877653
No 206
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.41 E-value=0.0003 Score=55.24 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=40.7
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
+|||||||||..+.++|..+|.....--|.++......+..+.+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~ 72 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA 72 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc
Confidence 599999999999999999999999999999999987777777664
No 207
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.41 E-value=0.00021 Score=58.89 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhcc
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLP 125 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~ 125 (170)
.++.+|||+=|=||.|++.++.. ....|+.||+|..+++.|++|.+.. ++ ++++++..|+.+++.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lN------g~~~~~~~~~~~Dvf~~l~ 188 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALN------GLDLDRHRFIQGDVFKFLK 188 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHT------T-CCTCEEEEES-HHHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc------CCCccceEEEecCHHHHHH
Confidence 34789999999999999998765 3458999999999999999998764 43 579999999998764
No 208
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00036 Score=59.48 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=59.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCC--------------------------------C-------eEEEEECCHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPS--------------------------------T-------LILGLEIRVKVSDYVI 96 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~--------------------------------~-------~v~GvDis~~~i~~a~ 96 (170)
+..++|==||+|.+++++|...++ . .++|+|+++.+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 357999999999999999998753 1 2789999999999999
Q ss_pred HHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087 97 DRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139 (170)
Q Consensus 97 ~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~ 139 (170)
.|+++. +..+-|.|.++|+...-+. + ++.+.+..|
T Consensus 272 ~NA~~A-----Gv~d~I~f~~~d~~~l~~~-~--~~~gvvI~N 306 (381)
T COG0116 272 ANARAA-----GVGDLIEFKQADATDLKEP-L--EEYGVVISN 306 (381)
T ss_pred HHHHhc-----CCCceEEEEEcchhhCCCC-C--CcCCEEEeC
Confidence 999887 5556799999999864332 2 444555544
No 209
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.38 E-value=0.00064 Score=56.95 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=45.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEE--EEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIAC--IRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~--i~~d~~~~ 123 (170)
+..++|+|||+|.=+..+.... ....+++||||.++++.+.+++... .+++|.+ +.+|..+.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~------~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG------NFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc------cCCCeEEEEEEecHHHH
Confidence 5689999999999655444332 2468999999999999999998732 4566665 67766543
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00043 Score=56.99 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=55.8
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCC-CCCeEEEEcchhhhccC
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ-YENIACIRTNAMKYLPN 126 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~i~~d~~~~l~~ 126 (170)
.+||-||-|.|..+.++.+..+-.+++.|||+++.++.|++-...... +. -+++.++.+|+.+++.+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~---~~~dpRv~i~i~Dg~~~v~~ 145 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSG---GADDPRVEIIIDDGVEFLRD 145 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccc---ccCCCceEEEeccHHHHHHh
Confidence 599999999999999999988777999999999999999988755411 12 36789999998888753
No 211
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00065 Score=57.65 Aligned_cols=79 Identities=11% Similarity=0.209 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCC--CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPS--TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA 131 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~--~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~ 131 (170)
+++.+|||++++.|.=+..+|...++ ..|+++|+++.-+...++|++++ +..|+.+++.|+......+...+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl------G~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL------GVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc------CCCceEEEecccccccccccccC
Confidence 45799999999999999999988654 45799999999999999999998 77888888888875433333333
Q ss_pred hhhhhHh
Q psy13087 132 QVRRCFA 138 (170)
Q Consensus 132 ~l~~i~~ 138 (170)
.+|+|..
T Consensus 229 ~fD~iLl 235 (355)
T COG0144 229 KFDRILL 235 (355)
T ss_pred cCcEEEE
Confidence 4666655
No 212
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.36 E-value=0.0012 Score=54.87 Aligned_cols=62 Identities=13% Similarity=0.335 Sum_probs=53.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+..++|-=||.|..+..+++..++..|+|+|.++.++..|+++++.. ..++.+++++...+.
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFF 82 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHH
Confidence 57999999999999999999887789999999999999999987643 257999999887643
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.24 E-value=0.00048 Score=56.84 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=37.8
Q ss_pred CCeEEEEcCccchHHHHHhhh-------CCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPM-------FPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~-------~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
+.+|+|-+||+|.|++++... .+...++|+|+++.++..|+.++.-
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 568999999999999998874 3667999999999999999887643
No 214
>KOG2915|consensus
Probab=97.19 E-value=0.0016 Score=53.34 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=65.8
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA 131 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~ 131 (170)
+.++.+|+|-|+|+|.++.++|+.. |..+++..|+.+...+.|.+..++. +--+|+.+.+-|+...= ......
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----gi~~~vt~~hrDVc~~G-F~~ks~ 176 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----GIGDNVTVTHRDVCGSG-FLIKSL 176 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----CCCcceEEEEeecccCC-cccccc
Confidence 5678999999999999999999976 6668999999999999998888876 44578999888766421 011234
Q ss_pred hhhhhHhhhcCCc
Q psy13087 132 QVRRCFANCILNS 144 (170)
Q Consensus 132 ~l~~i~~~~~~~g 144 (170)
..|-+|+-.|.|+
T Consensus 177 ~aDaVFLDlPaPw 189 (314)
T KOG2915|consen 177 KADAVFLDLPAPW 189 (314)
T ss_pred ccceEEEcCCChh
Confidence 5566666666664
No 215
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.16 E-value=0.0013 Score=53.48 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=36.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
..++||||.|.|..+..++..+.. |++.|+|+.|..+.+++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~k 135 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKK 135 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhC
Confidence 468999999999999999999865 99999999997766554
No 216
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.11 E-value=0.00019 Score=57.48 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=56.0
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH--HHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV--AALRSQNKGQYENIACIRTNAMKYLPNYFRKA 131 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~--~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~ 131 (170)
.++.+|||.+.|-|.+++..+++. ..+|+.||.++..++.|.-|= ..+ .-.+|+++.+|+.+.+.+ |.++
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l------~~~~i~iilGD~~e~V~~-~~D~ 204 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSREL------FEIAIKIILGDAYEVVKD-FDDE 204 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccc------cccccEEecccHHHHHhc-CCcc
Confidence 358899999999999999999884 348999999999999987652 111 113689999999987754 3344
Q ss_pred hhhhh
Q psy13087 132 QVRRC 136 (170)
Q Consensus 132 ~l~~i 136 (170)
++|.+
T Consensus 205 sfDaI 209 (287)
T COG2521 205 SFDAI 209 (287)
T ss_pred ccceE
Confidence 44433
No 217
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.06 E-value=0.0013 Score=53.88 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=38.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~a~~~~~~ 101 (170)
..+|||+|||.|..+.++...++.. ++++||.|+.|++.++.-.+.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 4689999999999888888877733 799999999999998876544
No 218
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.05 E-value=0.0041 Score=51.17 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
.++..|||+++|.|.=+..+|.... ...+++.|+++..+...+++++++ +..|+.++..|+....
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~------g~~~v~~~~~D~~~~~ 149 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL------GVFNVIVINADARKLD 149 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT------T-SSEEEEESHHHHHH
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc------CCceEEEEeecccccc
Confidence 3478999999999999999998875 569999999999999999999887 7789999988887653
No 219
>KOG2361|consensus
Probab=96.97 E-value=0.00052 Score=55.16 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=40.0
Q ss_pred eEEEEcCccchHHHHHhhhCCC--CeEEEEECCHHHHHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPS--TLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~--~~v~GvDis~~~i~~a~~~~~~ 101 (170)
+|||||||.|....-+.+..|+ ..+++.|.|+.+++..+++...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~ 119 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY 119 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc
Confidence 7999999999999999998877 7999999999999999887643
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.92 E-value=0.00082 Score=51.14 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVK 90 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~ 90 (170)
+.+||||||+.|.|+..+.... +...|+|||+.+.
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4899999999999999999986 4579999999877
No 221
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.90 E-value=0.0044 Score=50.11 Aligned_cols=61 Identities=16% Similarity=0.306 Sum_probs=46.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
..+|+|||||.=-+++-.....++..++|+||+..+++....-+..+ + .+..+...|....
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l------~-~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL------G-VPHDARVRDLLSD 166 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT------T--CEEEEEE-TTTS
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh------C-CCcceeEeeeecc
Confidence 57999999999999998887778889999999999999998887765 2 4566666666654
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.89 E-value=0.002 Score=54.36 Aligned_cols=57 Identities=16% Similarity=0.336 Sum_probs=41.1
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
.++..+|||||++|.++..+.+. +..|+|||..+ |-. ++. ..++|..++.|...+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l~~----~L~--------~~~~V~h~~~d~fr~~p 266 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-MAQ----SLM--------DTGQVEHLRADGFKFRP 266 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-cCH----hhh--------CCCCEEEEeccCcccCC
Confidence 45789999999999999999988 45899999554 211 111 23567777777666554
No 223
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.75 E-value=0.005 Score=47.12 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=45.7
Q ss_pred CCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.-|||+|-|||-++.++.++ .+...++.||.|++.+...++. ++.+.++++|+..
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----------~p~~~ii~gda~~ 105 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----------YPGVNIINGDAFD 105 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----------CCCccccccchhh
Confidence 567999999999999998775 3566899999999998877654 3567788888775
No 224
>KOG1501|consensus
Probab=96.71 E-value=0.0035 Score=54.53 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=45.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIR 117 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~ 117 (170)
...|||||+|||-++.-+++...+ .|+++|.-..|++.|++-..+. +-.++|.+|.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kn-----g~SdkI~vIn 122 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKN-----GMSDKINVIN 122 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcC-----CCccceeeec
Confidence 457999999999999998888654 7999999999999998887664 2335676664
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.71 E-value=0.0065 Score=48.39 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.++.+||-||..+|.....++.... +..|+|||.|+...+..-.-+++. +||..+-.|+...
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------~NIiPIl~DAr~P 134 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------PNIIPILEDARHP 134 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--------TTEEEEES-TTSG
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--------CceeeeeccCCCh
Confidence 45689999999999999999999764 779999999997766665444443 7899888998753
No 226
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.65 E-value=0.0053 Score=42.25 Aligned_cols=40 Identities=23% Similarity=0.497 Sum_probs=30.3
Q ss_pred EEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHH
Q psy13087 59 FVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~ 99 (170)
++|+|||+|... .++...+. ..++|+|+++.++..++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence 999999999976 44444332 37999999999999854443
No 227
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.64 E-value=0.0015 Score=46.20 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=26.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV 89 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~ 89 (170)
....+|||||.|-+.--|... +..-.|+|...
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhC--CCCcccccccc
Confidence 468999999999988888876 56789999753
No 228
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.64 E-value=0.00027 Score=49.06 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=22.7
Q ss_pred EEEcCccchHHHHHhhhCCCC---eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhh
Q psy13087 60 VDVGCGYGGLLVTLSPMFPST---LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC 136 (170)
Q Consensus 60 LDiGCG~G~~~~~la~~~p~~---~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i 136 (170)
|||||..|..+..+++..+.. +++++|..+. .+.+.+.+++. +..+++++++++..+.++.+. .+.++.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~-~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLP-DGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------G-----GG-BTEEEEES-THHHHHHHH-H--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcC-CCCEEEE
Confidence 699999999999998876543 6999999996 22333333322 123579999999987765322 4455555
Q ss_pred Hh
Q psy13087 137 FA 138 (170)
Q Consensus 137 ~~ 138 (170)
|+
T Consensus 74 ~i 75 (106)
T PF13578_consen 74 FI 75 (106)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 229
>PRK11524 putative methyltransferase; Provisional
Probab=96.57 E-value=0.0062 Score=49.97 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=41.2
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
.+++.|||-=||+|..++++.+. +.+++|+|++++.++.|+++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 45899999999999999997777 56899999999999999999864
No 230
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.48 E-value=0.0048 Score=51.46 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=47.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+..+||-=.|.|..+..+.+..|+..++|+|.++++++.|++++.. ..+++.+++++..+
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-------~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-------FDDRFIFIHGNFSN 80 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-------CCTTEEEEES-GGG
T ss_pred CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-------ccceEEEEeccHHH
Confidence 5799999999999999999999889999999999999999887643 23689999988765
No 231
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0062 Score=47.92 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=40.0
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
.++..|+|||+-.|.++..+++.... ..|+|||+.|-- ..++|.++++|+.
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~ 95 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDIT 95 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeecc
Confidence 34789999999999999999998643 469999998752 3456777777665
No 232
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.28 E-value=0.012 Score=46.69 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=54.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
+..+.||||--|.+..++-+.++...+++.|+++..++.|.+++.+. +..+.+++..+|....+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-----~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-----NLSERIDVRLGDGLAVL 80 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-----CCcceEEEeccCCcccc
Confidence 45699999999999999999999889999999999999999999876 34456777777765443
No 233
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0064 Score=47.86 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++.+||=||..+|......+...++..++|||.|+........-+++. +||..+..||..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--------~Ni~PIL~DA~~ 135 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--------PNIIPILEDARK 135 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--------CCceeeecccCC
Confidence 56789999999999999999999988778999999999888777766654 688888888874
No 234
>KOG4058|consensus
Probab=96.27 E-value=0.0062 Score=45.82 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=45.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
..+.+|||+|.|.+....|+.. -..-+|+|+++-.+.+++-+.-+. +.....+|.+-|..++
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~-----g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA-----GCAKSTRFRRKDLWKV 134 (199)
T ss_pred CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH-----hcccchhhhhhhhhhc
Confidence 4689999999999999988774 357899999999999987665443 1223456665555543
No 235
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.27 E-value=0.0097 Score=45.94 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
++..|||-=||+|..+.++... +.+++|+|++++.++.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 3789999999999999997777 5689999999999999874
No 236
>PRK13699 putative methylase; Provisional
Probab=96.13 E-value=0.017 Score=45.97 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
.++..|||-=||+|..+++..+. +.+++|+|++++.++.|.+++++.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 35789999999999999997766 567999999999999999998764
No 237
>PHA01634 hypothetical protein
Probab=96.12 E-value=0.017 Score=42.44 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=40.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
+.+|+|||.+-|..+++++... ...|+++|.++......+++++.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhh
Confidence 6899999999999999999875 35899999999999999988764
No 238
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.11 E-value=0.013 Score=46.61 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.4
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCC--eEEEEECCHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPST--LILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~--~v~GvDis~~~i~~a~~~~~ 100 (170)
+-.+.|=+||.|.++.-+.-.+++. .|+|-||++++++.|++|+.
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 4689999999999999998887654 79999999999999999853
No 239
>KOG1122|consensus
Probab=96.06 E-value=0.014 Score=50.35 Aligned_cols=80 Identities=10% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA 131 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~ 131 (170)
.+++.+|||.++..|.=+.++|..-.+ ..+++.|.+...+.....++.++ +..|..++..|..++-...|+.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl------Gv~ntiv~n~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL------GVTNTIVSNYDGREFPEKEFPG- 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh------CCCceEEEccCcccccccccCc-
Confidence 456899999999999988888876544 48999999999999999999998 7889888888988765566777
Q ss_pred hhhhhHhh
Q psy13087 132 QVRRCFAN 139 (170)
Q Consensus 132 ~l~~i~~~ 139 (170)
++|+|.+-
T Consensus 312 ~fDRVLLD 319 (460)
T KOG1122|consen 312 SFDRVLLD 319 (460)
T ss_pred ccceeeec
Confidence 89999875
No 240
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.00 E-value=0.0078 Score=48.30 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=49.4
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCC---CCCCCeEEEEcchhhhccCCCchhhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK---GQYENIACIRTNAMKYLPNYFRKAQV 133 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~---~~~~nv~~i~~d~~~~l~~~f~~~~l 133 (170)
++|||.=+|-|.=++-+|.. +++|+|+|.|+-+....+.-++....... ....+|+++++|+.++|. .+..++
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNSF 152 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS--
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCCC
Confidence 59999999999999999876 56899999999988877766655432210 012479999999999886 444555
Q ss_pred hhhHh
Q psy13087 134 RRCFA 138 (170)
Q Consensus 134 ~~i~~ 138 (170)
|.||+
T Consensus 153 DVVY~ 157 (234)
T PF04445_consen 153 DVVYF 157 (234)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 55544
No 241
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.84 E-value=0.008 Score=47.07 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=48.6
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|||+|+|+|-.++..|+.. ...|+..|+.+..+..+.-|++.. + -+|.+...|...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~an------g-v~i~~~~~d~~g 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAAN------G-VSILFTHADLIG 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhc------c-ceeEEeeccccC
Confidence 47899999999999999999875 358999999999988888887653 3 467777777654
No 242
>KOG3987|consensus
Probab=95.72 E-value=0.0017 Score=51.40 Aligned_cols=86 Identities=13% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR 135 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~ 135 (170)
..++||||.|.|.++..++..+.. |++.|.|..|..+.+++--.-.....+....+++-..-+...|+..|.+..+-+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~ 190 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLE 190 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHH
Confidence 479999999999999999998754 999999999998877652100000000001122222223344566677766555
Q ss_pred hHhhhcCC
Q psy13087 136 CFANCILN 143 (170)
Q Consensus 136 i~~~~~~~ 143 (170)
-.-+.+.|
T Consensus 191 Di~~vl~p 198 (288)
T KOG3987|consen 191 DIHLVLAP 198 (288)
T ss_pred HHHHHhcc
Confidence 44445555
No 243
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.72 E-value=0.017 Score=45.05 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=29.7
Q ss_pred CCeEEEEcCccch--HH--HHHhhh----CC-CCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGG--LL--VTLSPM----FP-STLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~--~~--~~la~~----~p-~~~v~GvDis~~~i~~a~~~ 98 (170)
.-+|+-.||++|. ++ +.+... .+ ..+++|.|||+.+++.|++-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 4789999999998 33 333331 12 35899999999999999863
No 244
>KOG4589|consensus
Probab=95.59 E-value=0.02 Score=44.71 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECC
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIR 88 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis 88 (170)
+.++.+|||+||..|.++.-+-+.. |+..|+|||+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 3457999999999999998888776 88899999984
No 245
>PRK00536 speE spermidine synthase; Provisional
Probab=95.55 E-value=0.14 Score=41.81 Aligned_cols=85 Identities=11% Similarity=-0.031 Sum_probs=56.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh-----h----ccC
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK-----Y----LPN 126 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~-----~----l~~ 126 (170)
..+||=||-|.|..+.++.+. |. +|+.|||++++++.+++-........ .-++++++.. ..+ + .+.
T Consensus 73 pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~--~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVK--NNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhh--cCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 579999999999999999976 54 89999999999999999554432111 2245665531 111 1 112
Q ss_pred CCchhhhhhhHhhhcCCccc
Q psy13087 127 YFRKAQVRRCFANCILNSQY 146 (170)
Q Consensus 127 ~f~~~~l~~i~~~~~~~g~~ 146 (170)
.++++.+..+.. ++.|+|+
T Consensus 148 ~~~~~fy~~~~~-~L~~~Gi 166 (262)
T PRK00536 148 EPDIHKIDGLKR-MLKEDGV 166 (262)
T ss_pred CCChHHHHHHHH-hcCCCcE
Confidence 355555555444 6666664
No 246
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.26 E-value=0.062 Score=46.05 Aligned_cols=69 Identities=17% Similarity=0.341 Sum_probs=52.8
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhcc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLP 125 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~ 125 (170)
...+||=+|-|.|--+.++.+ +|+ .+++-||++|+|++.++++..- +..+.+.+ ++++++..|+..++.
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vl-r~~N~~sf~dpRv~Vv~dDAf~wlr 360 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVL-RALNQGSFSDPRVTVVNDDAFQWLR 360 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHh-hhhccCCccCCeeEEEeccHHHHHH
Confidence 357899999999999999885 574 4899999999999999865322 22222233 569999999998764
No 247
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.02 E-value=0.05 Score=44.97 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=32.7
Q ss_pred CCeEEEEcCccch--HHHHH--hhhCC----CCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGG--LLVTL--SPMFP----STLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~--~~~~l--a~~~p----~~~v~GvDis~~~i~~a~~~ 98 (170)
.-+|+..||.+|. +++++ .+..+ +.+|+|+|||+.+++.|++-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 3699999999998 33333 33222 36899999999999999875
No 248
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.99 E-value=0.024 Score=44.65 Aligned_cols=60 Identities=15% Similarity=0.325 Sum_probs=34.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.|+|+|.-.|..++.+|... +..+|+||||+-....... ++.+ .-.++|+++++|..+
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~h-----p~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESH-----PMSPRITFIQGDSID 96 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG---------TTEEEEES-SSS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhc-----cccCceEEEECCCCC
Confidence 4799999999999998887643 6679999999654432211 1111 122679999998764
No 249
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.92 E-value=0.16 Score=42.26 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=52.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+...+|.=-|.|..+.++...+|.. +++|+|.++.+++.|+++.... .+++.+++++....
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l 85 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANL 85 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHH
Confidence 5789999999999999999998754 6999999999999999988653 26899999886653
No 250
>KOG3178|consensus
Probab=94.75 E-value=0.095 Score=44.27 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=54.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc----------
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP---------- 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~---------- 125 (170)
-...+|+|.|.|..+..+...+|. +-|++.+...+..++..+. +.|..+-+|..+-.|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~----------~gV~~v~gdmfq~~P~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA----------PGVEHVAGDMFQDTPKGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc----------CCcceecccccccCCCcCeEEEEee
Confidence 378999999999999999999887 8899999998888777652 224544455443333
Q ss_pred -CCCchhhhhhhHhhhcC
Q psy13087 126 -NYFRKAQVRRCFANCIL 142 (170)
Q Consensus 126 -~~f~~~~l~~i~~~~~~ 142 (170)
+...++...+++.+|-+
T Consensus 246 LhdwtDedcvkiLknC~~ 263 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKK 263 (342)
T ss_pred cccCChHHHHHHHHHHHH
Confidence 33567777777776544
No 251
>KOG1709|consensus
Probab=94.75 E-value=0.075 Score=42.43 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=50.6
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
.++.+||.||.|.|.....+.+.-|..+ +-||-.++.+.+.+...=. ...||.++.+-.++.++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~-------ek~nViil~g~WeDvl~ 163 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWR-------EKENVIILEGRWEDVLN 163 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccc-------cccceEEEecchHhhhc
Confidence 4578999999999999999998877654 4489999998887766321 34789999987777654
No 252
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.63 E-value=0.063 Score=43.99 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=34.9
Q ss_pred CCeEEEEcCccch----HHHHHhhhCC-----CCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGG----LLVTLSPMFP-----STLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~----~~~~la~~~p-----~~~v~GvDis~~~i~~a~~~ 98 (170)
.-+|+-.||+||. +++.+.+..+ ...++|.|||..+++.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 4689999999997 5555555564 47999999999999999853
No 253
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=94.30 E-value=0.033 Score=41.71 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=28.0
Q ss_pred EEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 83 LGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 83 ~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+|+|+|++|++.|+++.+... .+...+|+++++|+.+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~---~~~~~~i~~~~~d~~~l 38 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA---RSCYKCIEWIEGDAIDL 38 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc---ccCCCceEEEEechhhC
Confidence 589999999999987764320 01235799999998763
No 254
>KOG2940|consensus
Probab=94.27 E-value=0.1 Score=42.17 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=35.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
.+.++|||||-|.+...+.... -.+++-+|.|-.|++.++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc
Confidence 5789999999999999988775 23799999999999887643
No 255
>KOG3115|consensus
Probab=94.19 E-value=0.017 Score=45.58 Aligned_cols=29 Identities=55% Similarity=0.909 Sum_probs=26.2
Q ss_pred cCCccccchhhhcccccccChhhhhhccc
Q psy13087 141 ILNSQYENIACIRTNAMKYLPNYFRKAQA 169 (170)
Q Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (170)
+..|.|.|+++++.++|+|+||+|.+||+
T Consensus 111 ~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 111 SAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccccccccceeeeccchhhccchhhhccc
Confidence 44577999999999999999999999986
No 256
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.18 E-value=0.047 Score=48.20 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=28.3
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEE---ECCHHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGL---EIRVKVSDYVIDR 98 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~Gv---Dis~~~i~~a~~~ 98 (170)
..+||||||.|.|+.+|..+ +...+.+ |..+..++.|.++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc
Confidence 47899999999999999987 4322222 4445567776655
No 257
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.06 E-value=0.18 Score=41.46 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=38.6
Q ss_pred CeEEEEcCcc-chHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 57 VEFVDVGCGY-GGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 57 ~~vLDiGCG~-G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
.+|+=||||. -..++.+++.+ +++.|+++|+++++++.|++-++... +....+.|+.+|+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----~L~~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----GLSKRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------HH-SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----cccCCeEEEecchhcc
Confidence 5999999995 44566666554 56789999999999999988776210 1125689999887654
No 258
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.95 E-value=0.2 Score=39.84 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=49.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC---------
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN--------- 126 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~--------- 126 (170)
..+.||.|+|-|+.+..+.... --.|-.||..++.++.|++.+... ...-..+..+-.+++-|.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GGG----TT-EEEEEE
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHhhccCCCCcEeEEEe
Confidence 5799999999999998775443 237999999999999998765321 111244555555555442
Q ss_pred -----CCchhhhhhhHhhhcC
Q psy13087 127 -----YFRKAQVRRCFANCIL 142 (170)
Q Consensus 127 -----~f~~~~l~~i~~~~~~ 142 (170)
++.+..+-.++..|..
T Consensus 129 QW~lghLTD~dlv~fL~RCk~ 149 (218)
T PF05891_consen 129 QWCLGHLTDEDLVAFLKRCKQ 149 (218)
T ss_dssp ES-GGGS-HHHHHHHHHHHHH
T ss_pred hHhhccCCHHHHHHHHHHHHH
Confidence 3567777777776654
No 259
>KOG2651|consensus
Probab=93.94 E-value=0.11 Score=44.73 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
-+.|+|+|.|.|.++..++-.+ +..|.|||-|....++|++-
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHH
Confidence 4789999999999999999887 47999999997777776643
No 260
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.70 E-value=0.079 Score=39.27 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=35.0
Q ss_pred eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087 81 LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139 (170)
Q Consensus 81 ~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~ 139 (170)
+|+|+||.+++++.+++++++. +..++|++++.+-.. +..+.+++.++-+.+|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-----~~~~~v~li~~sHe~-l~~~i~~~~v~~~iFN 53 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-----GLEDRVTLILDSHEN-LDEYIPEGPVDAAIFN 53 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-----T-GSGEEEEES-GGG-GGGT--S--EEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhc-----CCCCcEEEEECCHHH-HHhhCccCCcCEEEEE
Confidence 5899999999999999999886 333579999865554 5555555566665555
No 261
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.68 E-value=0.18 Score=40.73 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=39.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY 127 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~ 127 (170)
+++||=||=..- .++++|...+..+|+.+||++..++..++.+++. +++ |+.++.|+...||+-
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~------gl~-i~~~~~DlR~~LP~~ 108 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEE------GLP-IEAVHYDLRDPLPEE 108 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH------T---EEEE---TTS---TT
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc------CCc-eEEEEecccccCCHH
Confidence 688999984433 4555555566679999999999999999999887 665 999999999888753
No 262
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=93.52 E-value=0.13 Score=41.85 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=41.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC-----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF-----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~-----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
...++|+|||.|.++.+++... +...++.||....-. .+-.++... .....++=++.|+.+.
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~-----~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKD-----ESEPKFERLRIDIKDL 85 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhcc-----CCCCceEEEEEEeecc
Confidence 5689999999999999999988 456899999865432 233333221 1113456666777654
No 263
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.01 E-value=0.13 Score=41.23 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=34.8
Q ss_pred CeEEEEcCccchHHHHHhhhCC--------CCeEEEEECCHHHHHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFP--------STLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p--------~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
..|+|+|.|+|.++..+..... ..+++-||+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 6899999999999888776543 24899999999998877777644
No 264
>KOG2078|consensus
Probab=92.60 E-value=0.085 Score=45.84 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=53.7
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l 124 (170)
++..|.|+-||-|-+.+-+++. ++.|++-|.++++++..+.++..... .-.+|.+...|+..++
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv----~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKV----DPSAIEIFNMDAKDFL 312 (495)
T ss_pred CcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccccc----chhheeeecccHHHHh
Confidence 3688999999999999999988 58999999999999999999865310 1135899999999988
No 265
>KOG1331|consensus
Probab=92.47 E-value=0.061 Score=44.31 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=32.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
+..++|+|||.|.++.- .|.+.++|.|++...+..|++.
T Consensus 46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred cceeeecccCCcccCcC----CCcceeeecchhhhhccccccC
Confidence 68999999999987654 3778899999999998877643
No 266
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.27 E-value=0.36 Score=39.51 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=37.3
Q ss_pred CeEEEEcCccc--hHHHHHhh-hCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC--eEEEEcchhh
Q psy13087 57 VEFVDVGCGYG--GLLVTLSP-MFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN--IACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G--~~~~~la~-~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~i~~d~~~ 122 (170)
..+||||||-= ...-+.|. ..|+++|+=||+++-.+..++.-+... ++ ..++++|+.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~--------~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN--------PRGRTAYVQADLRD 132 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---------TTSEEEEEE--TT-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC--------CCccEEEEeCCCCC
Confidence 68999999954 34555555 469999999999999999988876432 45 7888888765
No 267
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.64 E-value=0.29 Score=39.46 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=33.2
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDY 94 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~ 94 (170)
++..+||||+-||.|+-.+.... ...|+|||..-..+..
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~ 117 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHW 117 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCH
Confidence 47899999999999999988774 4589999998876654
No 268
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.61 E-value=0.43 Score=38.94 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=34.4
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
+++|+-||.|.+...+.... -..+.++|+++.+++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhC
Confidence 58999999999988887763 236899999999998887774
No 269
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.94 E-value=0.56 Score=34.13 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=26.2
Q ss_pred EEcCccc--hHHHHHh--hhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 61 DVGCGYG--GLLVTLS--PMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 61 DiGCG~G--~~~~~la--~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
|||+..| .....+. ...+...++++|-++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666553 456778999999999999999888
No 270
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.80 E-value=0.7 Score=39.13 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
.++.+||.+|||. |..++.+|+..+...++++|.+++..+.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 3568999999998 99999999987544699999999988887654
No 271
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=90.61 E-value=0.51 Score=41.83 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=40.5
Q ss_pred CCeEEEEcCccchHHHHHhhhCC----CCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP----STLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p----~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
..+|.|-.||+|.++...++... +..++|.|+++.....|+.|.--+
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh 237 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH 237 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence 46999999999999999888763 367999999999999999987554
No 272
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.55 E-value=0.83 Score=39.07 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=54.2
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
..+|+|-=||+|.=++..|...+...++.=|||+++++.+++|++.. ...+..+++.|+...+.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N------~~~~~~v~n~DAN~lm~ 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN------SGEDAEVINKDANALLH 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc------CcccceeecchHHHHHH
Confidence 46899999999999999999887779999999999999999999763 34567777788876653
No 273
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.23 E-value=0.98 Score=31.24 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=32.8
Q ss_pred CccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 64 CGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 64 CG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
||+|.++..+++.. .+..|+.+|.+++.++.+++. .+.++.+|+.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~ 51 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATD 51 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchh
Confidence 78888888888764 234799999999987776543 26678888775
No 274
>KOG2920|consensus
Probab=89.22 E-value=0.28 Score=40.38 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=31.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSD 93 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~ 93 (170)
+++|||+|||.|.-.+.+.... ...+...|.+.+.++
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred CceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 6899999999999999888764 367888899888873
No 275
>KOG1098|consensus
Probab=88.73 E-value=0.44 Score=43.36 Aligned_cols=36 Identities=31% Similarity=0.484 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCH
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRV 89 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~ 89 (170)
++...||||||..|.++.-++...| +..|+|||+-|
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 3467899999999999999999887 45899999864
No 276
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.42 E-value=0.45 Score=38.50 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=37.1
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
++-++||||.|.-.+--.+--+--+.+++|-||++..++.|+..+..
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~ 124 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISA 124 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHc
Confidence 46789999999877654444433357999999999999999998865
No 277
>KOG1269|consensus
Probab=88.11 E-value=0.37 Score=41.22 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
.++..++|+|||.|....+.+.. ..+.++|+|.++..+.++.......
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~ 156 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKA 156 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHH
Confidence 34568999999999999999865 4678999999999988887766543
No 278
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=86.96 E-value=2.4 Score=36.41 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=48.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYL 124 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l 124 (170)
+-+|||-=+|+|.=++..+...++ ..|+.-|+|+++++..++|++.. +++ .+++.+.|+...+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N------~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN------GLEDERIEVSNMDANVLL 115 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC------T-SGCCEEEEES-HHHHH
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc------cccCceEEEehhhHHHHh
Confidence 358999999999999999998543 48999999999999999998763 444 4888888988866
No 279
>KOG0024|consensus
Probab=86.59 E-value=2 Score=36.33 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
+.+.+||=+|+|. |-.+...|+.+...+|+.+|+++..++.|++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 4579999999996 6677777888887899999999999999987
No 280
>KOG2912|consensus
Probab=86.49 E-value=0.65 Score=39.24 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=40.9
Q ss_pred EEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120 (170)
Q Consensus 60 LDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~ 120 (170)
+|||+|.-.+-..+...--+..++++|+++..+..|++++.+. +..+.+.+++.+.
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn-----~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN-----NLSSLIKVVKVEP 162 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccc-----ccccceeeEEecc
Confidence 7999988776555544433578999999999999999999774 2334466665543
No 281
>KOG2198|consensus
Probab=86.34 E-value=2 Score=36.75 Aligned_cols=98 Identities=14% Similarity=0.335 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCC----CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCC
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPS----TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF 128 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~----~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f 128 (170)
++++.+|||++...|.=++.+.+.... ..|++=|+++..+......+..+ ..+++.+...|+..+ ++.-
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l------~~~~~~v~~~~~~~~-p~~~ 225 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL------PSPNLLVTNHDASLF-PNIY 225 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc------CCcceeeecccceec-cccc
Confidence 567899999999999988777665322 27999999999988888877554 335666666666542 2221
Q ss_pred -------chhhhhhhHhhhcCCccccchhhhcccccccChhhhhh
Q psy13087 129 -------RKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRK 166 (170)
Q Consensus 129 -------~~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 166 (170)
....+|+|+. .|.|..-+++.--++++++
T Consensus 226 ~~~~~~~~~~~fDrVLv---------DVPCS~Dgt~rk~~~i~~~ 261 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLV---------DVPCSGDGTLRKNPNIWKE 261 (375)
T ss_pred cccCchhhhhhcceeEE---------ecccCCCcccccCchHhhh
Confidence 2223445443 3455555555555555544
No 282
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.84 E-value=2.2 Score=36.46 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=56.3
Q ss_pred hhhccCCccchhhhcccCCCCcCCCCCCCCCCCC--------CCcccc-CCCCCCCCCCCCCeEEEEcCccchHHHHHhh
Q psy13087 5 ERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPND--------MDWSPL-YPELKDPTCEKKVEFVDVGCGYGGLLVTLSP 75 (170)
Q Consensus 5 ~~~~~~~~k~~~~~r~~~~p~~~~~~~~p~~~~~--------~~w~~~-~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~ 75 (170)
+.-|-.|...||+.+... .. .-++-|.|+. ..|... ..+... ...-.++|||.|.|.++.-+.+
T Consensus 25 ~~~L~~p~~GYYs~~~~~---G~-~GDFiTApels~lFGella~~~~~~wq~~g~---p~~~~lvEiGaG~G~l~~DiL~ 97 (370)
T COG1565 25 ELALYDPEHGYYSSAVKI---GR-KGDFITAPELSQLFGELLAEQFLQLWQELGR---PAPLKLVEIGAGRGTLASDILR 97 (370)
T ss_pred HHHHcCCCCcccccchhc---cc-cCCeeechhHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEeCCCcChHHHHHHH
Confidence 345677999999883322 11 1145555543 123221 111110 0135799999999998877665
Q ss_pred h----CC----CCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 76 M----FP----STLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 76 ~----~p----~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
. +| ..++.-||.|++...+=+++++..
T Consensus 98 ~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 98 TLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 4 33 468999999999988877776554
No 283
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=85.76 E-value=2.4 Score=34.24 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=41.0
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
.+..|||-=+|+|..++..... +..++|+|++++.++.+.+++...
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 4789999999999999987766 567999999999999999998764
No 284
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.55 E-value=2.4 Score=35.72 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=36.9
Q ss_pred CCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
+.+|+=+|||. |.+++.+|+..+...|+.+|++++-++.|++.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 34899999997 55668888888878999999999999999874
No 285
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=85.14 E-value=1.2 Score=35.44 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=17.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV 89 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~ 89 (170)
+..|.|+|||.+.++..+... ..|.-.|+-.
T Consensus 73 ~~viaD~GCGdA~la~~~~~~---~~V~SfDLva 103 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA 103 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S------EEEEESS-
T ss_pred CEEEEECCCchHHHHHhcccC---ceEEEeeccC
Confidence 468999999999998665422 3577777643
No 286
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=83.74 E-value=2.5 Score=34.28 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=34.2
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
+++|+=||.|.+...+.... -..+.++|+++.+++.-+.|.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~ 42 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF 42 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc
Confidence 68999999999999988874 236999999999988877775
No 287
>KOG1596|consensus
Probab=83.62 E-value=0.85 Score=37.16 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++++.+||=||.++|......+... |+..|++||.|+-.=......+++ -+||..|.-|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiEDAr 215 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIEDAR 215 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeeccCC
Confidence 5668999999999999999988864 677999999997543332222222 157776666665
No 288
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.45 E-value=1.7 Score=34.30 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=38.4
Q ss_pred CCeEEEEcCccchHHHHHhhh---C-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPM---F-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~---~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
...|+|+|.-.|..++..|.. . ...+|+|+||+-.....+..+ .+.|.+++++..
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~ 128 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSST 128 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCC
Confidence 478999999999988887763 2 236899999987665544332 245666666544
No 289
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.38 E-value=4 Score=34.65 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=35.8
Q ss_pred CCCCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 53 CEKKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 53 ~~~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
..++.+|+=+|+| -|.+++.+|+... ++|+++|++++-.+.|++-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence 4457888877776 5568899998764 8999999999988887654
No 290
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=83.25 E-value=7.4 Score=32.47 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=50.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN 126 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~ 126 (170)
+..|+=+| -.--+++++|-..-..++..|||++..+...++-++++ +++||..+.-|....+|.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~------g~~~ie~~~~Dlr~plpe 216 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL------GYNNIEAFVFDLRNPLPE 216 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh------CccchhheeehhcccChH
Confidence 67899999 44555666665543348999999999999999998887 788999988888877763
No 291
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=82.84 E-value=3 Score=34.25 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=36.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
+.+||==|||.|+++..+|.. +..+.|.|.|--|+-..+--
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fi 97 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFI 97 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHH
Confidence 579999999999999999998 67899999999997765543
No 292
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=81.80 E-value=5.3 Score=33.60 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=39.4
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR 103 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~ 103 (170)
.+-+|+-||+|-..++.++++. | ..+.+||+++..+...+-+++..+
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~-P-a~id~VDlN~ahiAln~lklaA~R 109 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRA-P-ARIDVVDLNPAHIALNRLKLAAFR 109 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcC-C-ceeEEEeCCHHHHHHHHHHHHHHh
Confidence 3679999999988899888865 6 489999999999988887776653
No 293
>PRK07102 short chain dehydrogenase; Provisional
Probab=81.17 E-value=9.8 Score=29.49 Aligned_cols=59 Identities=7% Similarity=0.066 Sum_probs=38.2
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++=.|+ +|.++..+++.+ .+.+|++++.+++-.+...+.+... ...++.++.+|..+
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR------GAVAVSTHELDILD 62 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh------cCCeEEEEecCCCC
Confidence 36777784 466666655544 2568999999987665544444332 23478888888764
No 294
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=81.12 E-value=1.2 Score=36.21 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=31.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
+.++||||||.-.+-...|..+ -.+++..|..+.-++..++.++.
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCC
Confidence 6799999999866543333222 12699999999999988887654
No 295
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=80.66 E-value=2.7 Score=31.61 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=24.3
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECC
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR 88 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis 88 (170)
.-|||+|=|.|..--.|-+.+|+..++.+|.-
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 46999999999999999999999999999974
No 296
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=80.07 E-value=1.3 Score=38.18 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=16.0
Q ss_pred CCeEEEEcCccchHHHHHhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSP 75 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~ 75 (170)
...|+|+|||+|..++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45899999999988766543
No 297
>KOG2352|consensus
Probab=79.79 E-value=0.87 Score=40.20 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=40.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~ 100 (170)
+..+|=||=|.|.+...+-...|...+++||++++|++.|.....
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~ 340 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFG 340 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhc
Confidence 567888888999999999999998999999999999999998753
No 298
>PRK07904 short chain dehydrogenase; Provisional
Probab=79.72 E-value=11 Score=29.80 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=40.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC---CCCeEEEEECCHHH-HHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF---PSTLILGLEIRVKV-SDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~---p~~~v~GvDis~~~-i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+||=.|++ |.++..+|+.+ .+.+|+.++.+++. ++.+.+.+... +..+++++.+|+.+
T Consensus 8 ~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~------~~~~v~~~~~D~~~ 71 (253)
T PRK07904 8 PQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA------GASSVEVIDFDALD 71 (253)
T ss_pred CcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc------CCCceEEEEecCCC
Confidence 5689999984 55666666543 23689999998774 56555555443 22468888888764
No 299
>KOG1227|consensus
Probab=79.49 E-value=0.61 Score=39.01 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=38.1
Q ss_pred CCeEEEEcCccchHHH-HHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLV-TLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~-~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
+..|+|+=.|-|.|++ .+-.. ....|.++|.+|..++..+++++.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~ 240 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEA 240 (351)
T ss_pred cchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHh
Confidence 4789999999999999 55544 456899999999999999988765
No 300
>KOG2811|consensus
Probab=78.69 E-value=4.3 Score=34.93 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=30.8
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEE---EECCHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILG---LEIRVKVSDY 94 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~G---vDis~~~i~~ 94 (170)
..++|+|||.|.++.+++...+..+++- ||....-+..
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~ 224 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKF 224 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhh
Confidence 5899999999999999999988776666 7776655443
No 301
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=77.64 E-value=5.2 Score=30.70 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=25.6
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
+|-=+|.|+=.+..+++-...+.+|+|+|++++.++..++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 4555788877655555554456799999999998887763
No 302
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.45 E-value=13 Score=28.44 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=37.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+..+|=+| |+|.++..+++.+ .+.+|++++.+++......+.+.. . ..+.++.+|+.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~-~~~~~~~~D~~ 64 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------K-GNVLGLAADVR 64 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------c-CcEEEEEccCC
Confidence 46788888 4777777776643 356899999988765555444322 1 35677777654
No 303
>KOG0022|consensus
Probab=77.29 E-value=6.6 Score=33.29 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=35.9
Q ss_pred CCCCCeEEEEcCccchHHHHH-hhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTL-SPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~l-a~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
.+++.++.=+|+|.=.++..+ |+.....+++|||++++-.+.|++-
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 566889999999986666554 4555566999999999999888753
No 304
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.99 E-value=20 Score=27.56 Aligned_cols=59 Identities=7% Similarity=-0.046 Sum_probs=38.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.+++|=.|+ +|.++..+++.+ .+.+|++++.+++......+.++.. ..++.++.+|+.+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST-------GVKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC-------CCcEEEEEccCCC
Confidence 457888884 666666666644 3568999999987665555444332 1357778887764
No 305
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=76.92 E-value=4.9 Score=28.01 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=28.0
Q ss_pred ccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 65 GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 65 G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
|-|.+++.+|+... .+++++|.+++-.+.+++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh
Confidence 56889999999986 899999999998888765
No 306
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.74 E-value=4 Score=37.06 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=25.7
Q ss_pred CccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHH
Q psy13087 64 CGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 64 CG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~ 97 (170)
||.|.++..+++.. .+..++.+|.+++.++.+++
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 66777777777643 35689999999999887753
No 307
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=76.55 E-value=4.2 Score=36.47 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=33.3
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.+++= ||.|.++..+++.. .+..++.||.+++.++.+++. ....+.+|+.+
T Consensus 418 ~hiiI--~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-------------g~~~i~GD~~~ 470 (558)
T PRK10669 418 NHALL--VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-------------GIRAVLGNAAN 470 (558)
T ss_pred CCEEE--ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-------------CCeEEEcCCCC
Confidence 34544 55566666676653 346899999999988777531 35566666654
No 308
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=76.01 E-value=2.4 Score=32.09 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=46.3
Q ss_pred EcCccchHHHHHhhhCC-CCeEEE--EECCHHHHHHH---HHHHHHHhhcCCCCCCCeEEEE-cchhhhccCCC--chhh
Q psy13087 62 VGCGYGGLLVTLSPMFP-STLILG--LEIRVKVSDYV---IDRVAALRSQNKGQYENIACIR-TNAMKYLPNYF--RKAQ 132 (170)
Q Consensus 62 iGCG~G~~~~~la~~~p-~~~v~G--vDis~~~i~~a---~~~~~~~~~~~~~~~~nv~~i~-~d~~~~l~~~f--~~~~ 132 (170)
||=|.=.|+..|++.++ ..++++ .|..++..+.- ..++++++ ..++.++. .|+.. +...+ ....
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat~-l~~~~~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDATK-LHKHFRLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCCc-ccccccccCCc
Confidence 45555556777777766 445554 45555554443 35666652 13455443 46664 44444 7778
Q ss_pred hhhhHhhhcCCc
Q psy13087 133 VRRCFANCILNS 144 (170)
Q Consensus 133 l~~i~~~~~~~g 144 (170)
+|+|.+|+|-.|
T Consensus 76 FDrIiFNFPH~G 87 (166)
T PF10354_consen 76 FDRIIFNFPHVG 87 (166)
T ss_pred CCEEEEeCCCCC
Confidence 999999999888
No 309
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.87 E-value=5.9 Score=34.09 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=28.2
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~ 98 (170)
.+++=+|| |.++..+++.. .+..|+.+|.+++.++.+++.
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 45555555 77777777654 346899999999988776553
No 310
>KOG2360|consensus
Probab=75.77 E-value=3.8 Score=35.39 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=51.1
Q ss_pred CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|+|..|-.|.=+..+|...+ ...+.|+|.+.+.++..++.+... +..++....+|+..
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~a------g~~~~~~~~~df~~ 275 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIA------GVSIVESVEGDFLN 275 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHc------CCCccccccccccC
Confidence 468999999999999999988654 568999999999999888887765 55667766777765
No 311
>PRK06949 short chain dehydrogenase; Provisional
Probab=75.70 E-value=21 Score=27.72 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=38.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+++||=.| |+|.++..+++.+ .+.+|++++.+++.++.....++.. ..++.++.+|+.
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~ 68 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------GGAAHVVSLDVT 68 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEecCC
Confidence 57888888 5666666666654 3568999999988776655554332 135677777664
No 312
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.60 E-value=21 Score=27.75 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=39.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|+ +|.++..+++.+ .+.+|+.++.+++.+....+.++.. + .++.++.+|+.+
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~Dl~~ 71 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA------G-GAAEALAFDIAD 71 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc------C-CceEEEEccCCC
Confidence 567888885 566666666543 3679999999987766655555432 1 357777777654
No 313
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=75.40 E-value=9.3 Score=32.60 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 53 CEKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 53 ~~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.+++..|.=+|||. |.-.+.-|+......+++||++++-++.|++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 56689999999986 5566666777766799999999999988875
No 314
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.20 E-value=20 Score=27.45 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=37.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+||=.|++ |.++..+++.+ .+.+|++++.+++....+.+.+.. ..++.++.+|..+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK--------YGNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEECCCCC
Confidence 4688999985 55555555543 356899999998766655444322 1357777777653
No 315
>KOG2793|consensus
Probab=75.10 E-value=7.1 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=25.6
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKV 91 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~ 91 (170)
..|||+|+|+|-.++.+|... ..+|..-|+-...
T Consensus 88 ~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~ 121 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV 121 (248)
T ss_pred eeEEEecCCccHHHHHHHHHh-cceeccCCchhhH
Confidence 469999999998888877754 4577777765433
No 316
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.08 E-value=18 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=37.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~ 120 (170)
+.++|=.|+ +|.++..+++.+ .+.+|++++.+.+......+.+... ...++.++.+|+
T Consensus 12 ~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~~d~ 71 (247)
T PRK08945 12 DRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA------GGPQPAIIPLDL 71 (247)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc------CCCCceEEEecc
Confidence 578888884 666666666544 3568999999987766555544432 223556666655
No 317
>PRK08703 short chain dehydrogenase; Provisional
Probab=74.22 E-value=17 Score=28.00 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~ 100 (170)
+.++|=.|| +|.++..+++.+ .+.+|++++.+++..+...+.+.
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHH
Confidence 468898995 566666666543 35689999999876665554443
No 318
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=73.66 E-value=25 Score=27.35 Aligned_cols=60 Identities=13% Similarity=-0.059 Sum_probs=37.4
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.||=.|. +|.++..+++.+ .+++|+.+|.+....+.....+... .+-.++.++.+|..+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAE-----YGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----cCCceeEEEEccCCC
Confidence 46888884 566666666543 3578999999987665554444332 111357777777653
No 319
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=73.62 E-value=12 Score=32.14 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=35.9
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
++++||=|.+|-...+-.++ ..| .+|++||+|+.......-+++..
T Consensus 35 ~~d~vl~ItSaG~N~L~yL~-~~P-~~I~aVDlNp~Q~aLleLKlAai 80 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDYLL-AGP-KRIHAVDLNPAQNALLELKLAAI 80 (380)
T ss_pred CCCeEEEEccCCchHHHHHh-cCC-ceEEEEeCCHHHHHHHHHHHHHH
Confidence 46899999887666666644 556 48999999999999888777664
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=73.39 E-value=12 Score=28.96 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
.++.+||-+|+|. |..+..+++... .++++++.+++..+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHH
Confidence 4578999999995 778888887764 78999999988776654
No 321
>KOG2352|consensus
Probab=73.30 E-value=6.1 Score=35.03 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=34.7
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
+++-+|||.-.+...+-+- ....++-+|+|+..++....+-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~ 91 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRN 91 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcc
Confidence 8999999999999988765 3457999999999998877664
No 322
>PRK08251 short chain dehydrogenase; Provisional
Probab=73.22 E-value=27 Score=26.94 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=39.2
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+++|=.| |+|.++..+++.+ .+.+|+.++.+++........+... ....++.++.+|+.+
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLAR-----YPGIKVAVAALDVND 64 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-----CCCceEEEEEcCCCC
Confidence 5688788 4677777766654 2468999999988776555544332 112357778887764
No 323
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=73.14 E-value=11 Score=30.40 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
..+.+||..||| .|..++.+|+.. +.++++++.+++..+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH
Confidence 346788888987 488889999876 4689999999988777643
No 324
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.97 E-value=7.3 Score=32.39 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=32.1
Q ss_pred EEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
|+|+=||.|.+...+.... -..+.++|+++.+++.-+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhC
Confidence 5899999999999987663 224678999999988877764
No 325
>PRK06172 short chain dehydrogenase; Provisional
Probab=72.84 E-value=26 Score=27.15 Aligned_cols=59 Identities=5% Similarity=-0.001 Sum_probs=39.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|+ +|.++..+++.+ .+.+|+.++.+++-+..+.+.++.. -.++.++.+|+.+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA-------GGEALFVACDVTR 67 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCC
Confidence 467888886 455555555543 2468999999988776665555432 1457888887764
No 326
>KOG3045|consensus
Probab=72.60 E-value=2 Score=35.37 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=14.1
Q ss_pred CCeEEEEcCccchHHH
Q psy13087 56 KVEFVDVGCGYGGLLV 71 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~ 71 (170)
...|.|+|||-+.++.
T Consensus 181 ~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS 196 (325)
T ss_pred ceEEEecccchhhhhh
Confidence 5789999999999875
No 327
>PRK08339 short chain dehydrogenase; Provisional
Probab=71.96 E-value=31 Score=27.28 Aligned_cols=60 Identities=7% Similarity=0.007 Sum_probs=38.3
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|=.|++.|. +..+|+.+ .+.+|+.++.+++.++.+.+.+... .-.++.++.+|+.+
T Consensus 8 ~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 8 GKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSE------SNVDVSYIVADLTK 69 (263)
T ss_pred CCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh------cCCceEEEEecCCC
Confidence 4678888876543 44344332 3568999999988776666555432 12367778887764
No 328
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=71.24 E-value=6.7 Score=35.83 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=26.2
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~ 97 (170)
.+|+=+|| |.++..+++.. .+..++.+|.+++.++.+++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK 441 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 45665555 55555555432 24689999999999888754
No 329
>PRK06125 short chain dehydrogenase; Provisional
Probab=70.81 E-value=31 Score=26.94 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=37.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++++|=.|++ |.++..++..+ .+++|++++.+++..+.+.+.+... ...++.++.+|+.
T Consensus 7 ~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~~D~~ 67 (259)
T PRK06125 7 GKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA------HGVDVAVHALDLS 67 (259)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh------cCCceEEEEecCC
Confidence 4678888864 44555554432 2568999999988776665555432 1235677777765
No 330
>PRK07576 short chain dehydrogenase; Provisional
Probab=70.75 E-value=31 Score=27.22 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=36.3
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.++|=.| |+|.++..+++.+ .+..|++++.+++.+....+.+... ..++.++.+|+.
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~ 68 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-------GPEGLGVSADVR 68 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------CCceEEEECCCC
Confidence 46788777 4666666655543 3568999999987665554444332 134566666654
No 331
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=70.68 E-value=18 Score=29.76 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=34.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCC----CeEEEEECCHHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPS----TLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~----~~v~GvDis~~~i~~a~~~~~~ 101 (170)
....+|+|+|+..=+.-+...+.. ..++.||+|...++...+.+..
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~ 128 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR 128 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH
Confidence 578999999998766555544433 5899999999988876666543
No 332
>PRK07063 short chain dehydrogenase; Provisional
Probab=69.69 E-value=33 Score=26.74 Aligned_cols=61 Identities=7% Similarity=0.097 Sum_probs=39.3
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|++ |.++..+++.+ .+.+|+.++.+++.++...+.+... +.-.++.++.+|+.+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD-----VAGARVLAVPADVTD 69 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----cCCceEEEEEccCCC
Confidence 4678888875 44455555443 3568999999988777666555431 112357788887654
No 333
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.68 E-value=34 Score=26.65 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=39.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.| |+|.++..+++.+ .+.+|+.++.+.+..+...+.+... ..++.++.+|+.+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------~~~~~~~~~Dl~d 72 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-------GIDALWIAADVAD 72 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEEccCCC
Confidence 46788888 5677777777654 3568999999987766555544332 1356677777663
No 334
>PRK07814 short chain dehydrogenase; Provisional
Probab=69.62 E-value=34 Score=26.88 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=38.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|. +|.++..+++.+ .+.+|++++.+++.++...+.+... ...+.++.+|..+
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~ 70 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA-------GRRAHVVAADLAH 70 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCC
Confidence 467888884 666666666543 3579999999987666554444321 1357777777553
No 335
>PRK07062 short chain dehydrogenase; Provisional
Probab=68.86 E-value=35 Score=26.68 Aligned_cols=61 Identities=8% Similarity=-0.034 Sum_probs=38.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|=.|++. .++..+++.+ .+.+|+.++.+++.++.+.+.+... ....++.++.+|+.+
T Consensus 8 ~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 8 GRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEERLASAEARLREK-----FPGARLLAARCDVLD 70 (265)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhh-----CCCceEEEEEecCCC
Confidence 56788888654 4444555443 3568999999988776665555432 111356677777654
No 336
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.69 E-value=38 Score=26.00 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=38.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|+ +|.++..+++.+ .+.+|+.++.+++..+.....+... ..++.++.+|..+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY-------GVKVVIATADVSD 67 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------CCeEEEEECCCCC
Confidence 356788884 677777776653 4668999999987655544444321 1357777777643
No 337
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=68.64 E-value=35 Score=26.53 Aligned_cols=59 Identities=5% Similarity=-0.049 Sum_probs=39.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.| |+|.++..+++.+ .+.+|++++.+++.++...+.++.. + .++.++.+|+.+
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~-~~~~~~~~D~~~ 70 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------G-LSAHALAFDVTD 70 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------C-ceEEEEEccCCC
Confidence 46888888 4677777776654 3568999999988766655554331 1 246667777653
No 338
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=68.53 E-value=16 Score=30.24 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.++.+||=+|||. |..++.+|+.. +.+++++|.+++.++.+++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 4478899999976 66777788876 4589999999998877643
No 339
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=68.18 E-value=15 Score=30.72 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=35.8
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
..+++|+=||.|.+...+.... -.-+.++|+++.+++.-+.|.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~ 45 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANF 45 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhC
Confidence 4789999999999998888775 236899999999988777664
No 340
>KOG1201|consensus
Probab=67.03 E-value=26 Score=29.24 Aligned_cols=57 Identities=7% Similarity=0.108 Sum_probs=41.9
Q ss_pred CCeEEEEcCccch---HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGG---LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~---~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+..||=-|.|.|- ++.++|++ ++.++..|++++......+.+++. + +++...+|+.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~------g--~~~~y~cdis~ 97 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKI------G--EAKAYTCDISD 97 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhc------C--ceeEEEecCCC
Confidence 6788888888885 66777776 457999999999988888887753 1 45555555543
No 341
>PRK06914 short chain dehydrogenase; Provisional
Probab=66.42 E-value=42 Score=26.48 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=36.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|+. |.++..+++.. .+.+|++++.+++..+...+.+... +.-.++.++.+|+.+
T Consensus 3 ~k~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~d 65 (280)
T PRK06914 3 KKIAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQL-----NLQQNIKVQQLDVTD 65 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCceeEEecCCCC
Confidence 3567888853 44444444322 3568999999887665554443322 111357888887764
No 342
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.76 E-value=48 Score=25.39 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=37.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.++|=+|+ +|.++..+++.+ .+.+|+.++.+++.+..+.+.++.. -.++.++.+|..
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~ 64 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL-------GTEVRGYAANVT 64 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCC
Confidence 467888886 444555555433 2568999999987766665555432 135677777754
No 343
>PRK09242 tropinone reductase; Provisional
Probab=65.70 E-value=49 Score=25.70 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=37.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|=.|++. .++..+++.+ .+.+|+.++.+.+.++...+++... ....++.++.+|+.+
T Consensus 9 ~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 9 GQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEE-----FPEREVHGLAADVSD 71 (257)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-----CCCCeEEEEECCCCC
Confidence 46788888744 4444444432 2568999999987766655554332 112357777777653
No 344
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=65.46 E-value=36 Score=27.10 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=43.3
Q ss_pred CCeEEEEcCccc----hHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcch-hhhccC
Q psy13087 56 KVEFVDVGCGYG----GLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNA-MKYLPN 126 (170)
Q Consensus 56 ~~~vLDiGCG~G----~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~-~~~l~~ 126 (170)
...++++.|+-| .+++..|.+..+.++++|--++......++.+... +. +-+.|+.++. .+.++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~------~~~~~vEfvvg~~~e~~~~~ 112 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA------GLSDVVEFVVGEAPEEVMPG 112 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc------cccccceEEecCCHHHHHhh
Confidence 468999976644 34444455556679999999988877777776554 33 3368888874 444443
No 345
>PRK05854 short chain dehydrogenase; Provisional
Probab=65.35 E-value=53 Score=26.85 Aligned_cols=61 Identities=8% Similarity=-0.003 Sum_probs=39.3
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|++. .++.++|+.+ .+.+|+.+..+.+..+.+.+.+... ....++.++.+|+.+
T Consensus 14 gk~~lITGas~-GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~-----~~~~~v~~~~~Dl~d 76 (313)
T PRK05854 14 GKRAVVTGASD-GLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA-----VPDAKLSLRALDLSS 76 (313)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCCceEEEEecCCC
Confidence 46788778754 4455555433 3578999999988777666655432 122357888888764
No 346
>PRK07774 short chain dehydrogenase; Provisional
Probab=65.34 E-value=51 Score=25.37 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=37.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.| |+|.++..+++.+ .+.+|++++.+++........+... ..++.++.+|..+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~ 66 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD-------GGTAIAVQVDVSD 66 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEcCCCC
Confidence 46788777 5566677666644 3568999999887665554444321 1356667777653
No 347
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=65.33 E-value=14 Score=31.68 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=37.7
Q ss_pred CCCeEEEEcCccch----HHHHHhhhC---CCCeEEEEEC----CHHHHHHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGG----LLVTLSPMF---PSTLILGLEI----RVKVSDYVIDRVAAL 102 (170)
Q Consensus 55 ~~~~vLDiGCG~G~----~~~~la~~~---p~~~v~GvDi----s~~~i~~a~~~~~~~ 102 (170)
+.-+|+|+|.|.|. ++..||.+. |..++|||+. +...++.+.+++.+.
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f 168 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEF 168 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH
Confidence 45799999999996 555666653 4559999999 888888888887654
No 348
>PRK05875 short chain dehydrogenase; Provisional
Probab=65.32 E-value=46 Score=26.19 Aligned_cols=61 Identities=8% Similarity=0.103 Sum_probs=37.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|++ |.++..+++.+ .+.+|++++.+++......+.+... ....++.++.+|+.+
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEAL-----KGAGAVRYEPADVTD 69 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-----cCCCceEEEEcCCCC
Confidence 4688888854 44555555533 2568999999877655544444322 112467777777653
No 349
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=64.93 E-value=35 Score=26.69 Aligned_cols=56 Identities=2% Similarity=0.067 Sum_probs=35.9
Q ss_pred eEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++|=.|.+ |.++..+++.+ .+.+|+.++.+++.++.+.+.++.. .++.++.+|+.+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY--------GEVYAVKADLSD 59 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--------CCceEEEcCCCC
Confidence 46667755 45566655543 3568999999988777666655432 356677777653
No 350
>KOG3924|consensus
Probab=64.87 E-value=6.2 Score=34.21 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=38.8
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~ 100 (170)
+.+++...|+|.|-|......|.......=+|+|+....-..|..+.+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~ 237 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKE 237 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHH
Confidence 566789999999999999998887665578999998777777665543
No 351
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=64.86 E-value=48 Score=25.44 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=37.6
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|+ +|.++..+++.+ .+.+|++++.+.+....+...+... ..++.++.+|+.+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~ 63 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK-------GGNAQAFACDITD 63 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-------CCcEEEEEcCCCC
Confidence 467888885 455666655543 2468999999987766555544332 1357777777653
No 352
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=64.23 E-value=16 Score=32.42 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=30.5
Q ss_pred CeEEEEcCccchHHHHHhh--hCCCCeEEEEECCHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSP--MFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~--~~p~~~v~GvDis~~~i~~a~~ 97 (170)
++|.=||+|+..+..+++- ...+.+|+|+|++++-++..++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 3577789999887666444 3335789999999999887653
No 353
>PRK10458 DNA cytosine methylase; Provisional
Probab=64.08 E-value=24 Score=31.24 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=34.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
..+++|+=||.|.+...+-... ...|.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHc
Confidence 4699999999999999987653 336889999999887766653
No 354
>PRK06181 short chain dehydrogenase; Provisional
Probab=64.02 E-value=50 Score=25.70 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=35.1
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.++|=.|+ +|.++..+++.+ .+.+|++++.++...+...+.+... ..++.++.+|..+
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~ 61 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH-------GGEALVVPTDVSD 61 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCC
Confidence 35676664 455666555432 3568999999987666554444332 1357777777653
No 355
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=63.35 E-value=50 Score=25.28 Aligned_cols=59 Identities=8% Similarity=0.005 Sum_probs=37.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+++||=.|+ +|.++..+++.+ .+.+|++++.+++.+..+...+... ..++.++.+|..+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~ 66 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA-------GGKARARQVDVRD 66 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCC
Confidence 467887775 566666665543 2468999999977655554444321 2357777777653
No 356
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=63.19 E-value=3.1 Score=28.91 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=14.5
Q ss_pred EEEEcCccchHHHHHhhhC
Q psy13087 59 FVDVGCGYGGLLVTLSPMF 77 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~ 77 (170)
-+|||||.|...-+.-+.+
T Consensus 6 NIDIGcG~GNTmda~fRsc 24 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSC 24 (124)
T ss_pred ccccccCCCcchhhhhhcc
Confidence 4799999999776655544
No 357
>PRK08643 acetoin reductase; Validated
Probab=63.14 E-value=51 Score=25.55 Aligned_cols=58 Identities=5% Similarity=0.067 Sum_probs=35.9
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+++|=.|+ +|.++..+++.+ .+.+|+.++.+++..+.....+... + .++.++.+|+.+
T Consensus 3 k~~lItGa-s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~Dl~~ 62 (256)
T PRK08643 3 KVALVTGA-GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD------G-GKAIAVKADVSD 62 (256)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------C-CeEEEEECCCCC
Confidence 45666664 444555555543 3568999999988776665555432 1 356677777653
No 358
>KOG2782|consensus
Probab=62.68 E-value=9.4 Score=30.82 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=42.3
Q ss_pred CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
++...+|.-.|.|..+..+..++++..++++|.+|-+-..|....++
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~e 89 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDE 89 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHh
Confidence 36899999999999999999999999999999999999988877643
No 359
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.34 E-value=43 Score=26.34 Aligned_cols=36 Identities=11% Similarity=-0.039 Sum_probs=25.5
Q ss_pred CCeEEEEcCccc-hHHHHHhhhC--CCCeEEEEECCHHH
Q psy13087 56 KVEFVDVGCGYG-GLLVTLSPMF--PSTLILGLEIRVKV 91 (170)
Q Consensus 56 ~~~vLDiGCG~G-~~~~~la~~~--p~~~v~GvDis~~~ 91 (170)
++.+|=.|.++| .++.++|+.+ .+.+|+.++.+++.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence 578999998763 6666666654 35688888888654
No 360
>PRK07677 short chain dehydrogenase; Provisional
Probab=62.26 E-value=57 Score=25.30 Aligned_cols=57 Identities=5% Similarity=0.033 Sum_probs=35.1
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+++|=.|++.| ++..+++.+ .+.+|++++.+++..+.+.+.+... . .++.++.+|..
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~D~~ 60 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------P-GQVLTVQMDVR 60 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------C-CcEEEEEecCC
Confidence 46777787554 444444332 2568999999987666555544332 1 35777777765
No 361
>PRK05599 hypothetical protein; Provisional
Probab=62.07 E-value=54 Score=25.56 Aligned_cols=58 Identities=5% Similarity=0.051 Sum_probs=35.9
Q ss_pred eEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.+|=.|++.| ++..+|+.+ .+.+|+.++.+++.++...+.++.. +...+.++.+|+.+
T Consensus 2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~------~~~~~~~~~~Dv~d 60 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQR------GATSVHVLSFDAQD 60 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------cCCceEEEEcccCC
Confidence 3566677554 444444432 3568888999888777666665442 22347777777664
No 362
>PRK09186 flagellin modification protein A; Provisional
Probab=61.31 E-value=57 Score=25.16 Aligned_cols=61 Identities=8% Similarity=0.178 Sum_probs=37.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|++ |.++..+|+.+ .+.+|++++.+++.++.+.+.+... .....+.++.+|+.+
T Consensus 4 ~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 4 GKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKE-----FKSKKLSLVELDITD 66 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhh-----cCCCceeEEEecCCC
Confidence 4678878864 44555555543 3568999999888776665555321 012346666777654
No 363
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=60.99 E-value=35 Score=29.56 Aligned_cols=55 Identities=5% Similarity=0.061 Sum_probs=36.5
Q ss_pred CeEEEEcCccchHHHHHhh---hCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSP---MFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~---~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
++||=||||. .+...|. +..+.+|+..|.+.+..+.+.... ..+++.++.|+.+.
T Consensus 2 ~~ilviGaG~--Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------~~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGG--VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------GGKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCch--hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------cccceeEEecccCh
Confidence 4689999954 3333333 334468999999988877765542 23677777777653
No 364
>PRK05867 short chain dehydrogenase; Provisional
Probab=60.82 E-value=60 Score=25.17 Aligned_cols=59 Identities=5% Similarity=0.071 Sum_probs=37.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|=.|++.| ++..+++.+ .+.+|+.++.+++.++...+.++.. + .++.++.+|..+
T Consensus 9 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~-~~~~~~~~D~~~ 69 (253)
T PRK05867 9 GKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------G-GKVVPVCCDVSQ 69 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------C-CeEEEEEccCCC
Confidence 578898997544 444444433 2568999999988776665554432 1 356666776553
No 365
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=60.49 E-value=7.7 Score=32.70 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=15.7
Q ss_pred CCeEEEEcCccchHHHHHhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPM 76 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~ 76 (170)
.-+|+|+||..|..++.+...
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHH
T ss_pred ceEEEecCCCCCccHHHHHHH
Confidence 468999999999998887654
No 366
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.19 E-value=34 Score=27.72 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=31.0
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
.+|.=||+|.=...+...-...+..|+.+|++++.++.+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~ 48 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAK 48 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 357778888544444333333356899999999999998877543
No 367
>PRK06197 short chain dehydrogenase; Provisional
Probab=59.94 E-value=65 Score=25.95 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=38.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+++||=.|+ +|.++..+++.+ .+.+|+.+..+++..+.+.+.+... ..-.++.++.+|+.+
T Consensus 16 ~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~~Dl~d 78 (306)
T PRK06197 16 GRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAA-----TPGADVTLQELDLTS 78 (306)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCCceEEEECCCCC
Confidence 467887775 455666666543 2568999999887766655554432 112357777777654
No 368
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=59.74 E-value=30 Score=28.67 Aligned_cols=44 Identities=14% Similarity=0.337 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.++.+||=.|||. |.+++.+|+......|+++|.+++..+.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3467888888854 5566777877643359999999988777743
No 369
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=59.70 E-value=69 Score=24.88 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=36.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+..||=+|++ |.++..+++.+ .+..++.++.+.+.++.....++.. + .++.++.+|+.+
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~------~-~~~~~~~~D~~~ 71 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------G-GQAFACRCDITS 71 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------C-CcEEEEEccCCC
Confidence 5789999955 44444444432 3568999998888776655544332 1 256677777653
No 370
>PRK09135 pteridine reductase; Provisional
Probab=59.68 E-value=69 Score=24.44 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=35.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCH-HHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRV-KVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~-~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|+ +|.++..+++.+ .+.+|++++.+. .-.+.....+... ...++.++.+|..+
T Consensus 6 ~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~ 68 (249)
T PRK09135 6 AKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL------RPGSAAALQADLLD 68 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh------cCCceEEEEcCCCC
Confidence 467999996 567777666654 357899999863 3333333333221 12357777777653
No 371
>PLN02780 ketoreductase/ oxidoreductase
Probab=58.99 E-value=59 Score=26.83 Aligned_cols=60 Identities=8% Similarity=-0.077 Sum_probs=37.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+..+|=.|++.| ++.++|+.+ .+.+|+.++.+++.++...+.++.. .+..++..+.+|..
T Consensus 53 g~~~lITGAs~G-IG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~-----~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDG-IGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSK-----YSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH-----CCCcEEEEEEEECC
Confidence 568888897554 444444432 2568999999998887776665442 11124666666664
No 372
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=58.99 E-value=32 Score=28.81 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.++.+||=+|||. |.+++.+|+.....+|+++|.+++..+.+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3467888889864 5566777877643379999999998777743
No 373
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=58.71 E-value=31 Score=28.41 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
++.+||=+|||. |.+++.+|+......++++|.+++.++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 367788788763 4466667776543379999999998887764
No 374
>PLN02253 xanthoxin dehydrogenase
Probab=58.59 E-value=42 Score=26.51 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=36.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|+ +|.++..+++.+ .+.+|+.++.+++..+...+.+. ...++.++.+|+.+
T Consensus 18 ~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~d 77 (280)
T PLN02253 18 GKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG--------GEPNVCFFHCDVTV 77 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--------CCCceEEEEeecCC
Confidence 467888884 556666666544 35689999998765544333221 11357777777654
No 375
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=58.44 E-value=54 Score=25.59 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=35.8
Q ss_pred eEEEEcCccchHHHHHhhhC------CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF------PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~------p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.+|=.|++. .++.++|+.+ .+.+|+.+..+++.++.+.+.++.. ..-.++.++.+|+.+
T Consensus 2 ~vlItGas~-GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~v~~~~~Dl~~ 66 (256)
T TIGR01500 2 VCLVTGASR-GFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAE-----RSGLRVVRVSLDLGA 66 (256)
T ss_pred EEEEecCCC-chHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhc-----CCCceEEEEEeccCC
Confidence 466677664 4444444432 3668999999988777666555431 011357777777654
No 376
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=58.39 E-value=13 Score=34.08 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC-------C-----CCeEEEEECCH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF-------P-----STLILGLEIRV 89 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~-------p-----~~~v~GvDis~ 89 (170)
.-+|+|+|.|+|...+.+...+ | ..+++++|..+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 3689999999999666655443 3 34899999754
No 377
>PRK06194 hypothetical protein; Provisional
Probab=58.18 E-value=71 Score=25.25 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=36.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|. +|.++..+++.+ .+.+|+.+|.+.+.++...+.+... -.++.++.+|+.+
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ-------GAEVLGVRTDVSD 66 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------CCeEEEEECCCCC
Confidence 356786664 455555555433 3568999999887666554444321 1357778887654
No 378
>KOG0821|consensus
Probab=58.14 E-value=18 Score=29.34 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=43.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
+.-|.+||-|.|.++..+.... -.++..||++...+.-.+.-.++ .-....+.++|+..+
T Consensus 51 ~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EA-------a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEA-------APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhc-------CCcceEEecccccee
Confidence 5789999999999999988764 24788899998877765544332 223566777777654
No 379
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.58 E-value=17 Score=26.31 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=24.9
Q ss_pred CCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHH
Q psy13087 56 KVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVK 90 (170)
Q Consensus 56 ~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~ 90 (170)
..+|+|||-|-=. .+..|+++ +..++++||++.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK 47 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc
Confidence 3589999988654 44555555 478999999988
No 380
>PRK12939 short chain dehydrogenase; Provisional
Probab=57.45 E-value=83 Score=24.03 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=38.6
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|+ +|.++..+++.+ .+.++++++.+++.+....+.++.. ..++.++.+|+.+
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-------GGRAHAIAADLAD 67 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCC
Confidence 467886664 566666666644 3568999999887766655554332 1467888887764
No 381
>PRK07890 short chain dehydrogenase; Provisional
Probab=57.18 E-value=76 Score=24.49 Aligned_cols=59 Identities=17% Similarity=0.034 Sum_probs=36.9
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|+ +|.++..+++.+ .+.+|++++.+++-.+...+.+... -.++.++.+|..+
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~ 65 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------GRRALAVPTDITD 65 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------CCceEEEecCCCC
Confidence 467887775 445555555543 3568999999987666555544332 1357777777653
No 382
>PRK05650 short chain dehydrogenase; Provisional
Probab=57.11 E-value=71 Score=25.09 Aligned_cols=57 Identities=7% Similarity=-0.002 Sum_probs=35.2
Q ss_pred eEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+||=.|+ +|.++..+++.+ .+.+|+.++.+.+..+.+...+... ..++.++.+|+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA-------GGDGFYQRCDVRD 60 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEccCCC
Confidence 4666665 455555555443 2568999999887666555544332 2457777787653
No 383
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=56.97 E-value=25 Score=30.14 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=27.1
Q ss_pred eEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~ 97 (170)
+|+=+|| |.++..+++.. .+..|+.+|.+++.++.+++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 3444555 78888888753 35689999999998776544
No 384
>PLN02740 Alcohol dehydrogenase-like
Probab=56.02 E-value=34 Score=28.75 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.++.+||=+|||. |.+++.+|+......|+++|.+++.++.+++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4568888888863 4455667776643369999999988887753
No 385
>KOG3201|consensus
Probab=55.94 E-value=5.7 Score=30.58 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=35.4
Q ss_pred CCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 56 ~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
+..|||+|-|. |--++.+|...|...|.-.|-+++.++-.++.+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~ 74 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIR 74 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHH
Confidence 57899999995 555666777788889999999999988766544
No 386
>PRK07024 short chain dehydrogenase; Provisional
Probab=55.86 E-value=48 Score=25.86 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=35.2
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++||=.|+ +|.++..+++.+ .+.+|+.++.+++.++...+.+.. . .++.++.+|+.+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~-~~~~~~~~Dl~~ 61 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-------A-ARVSVYAADVRD 61 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-------C-CeeEEEEcCCCC
Confidence 45666776 555666655543 356899999998766544333211 1 267778887764
No 387
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=55.77 E-value=38 Score=26.60 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCe-EEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTL-ILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~-v~GvDis~~~i~~a~~ 97 (170)
.++.+||=.|||. |..++.+|+... .. +++++.+++....+++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH
Confidence 3467788889876 777888888764 56 9999999888776554
No 388
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=55.75 E-value=41 Score=25.47 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=27.6
Q ss_pred EEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
|.=||+|+=.-.+.+.-...+.+|+.+|.+++.++.+.++++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 4446776533222222223478999999999999999988776
No 389
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=55.67 E-value=40 Score=27.75 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
+++.+||=.|+| .|.+++.+|+.. +.++++++.+++-.+.|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH
Confidence 456889988875 445667777775 4689999999988776655
No 390
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.58 E-value=9.7 Score=32.86 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=30.7
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDY 94 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~ 94 (170)
..+|||+|.|.|.-+.++-..+|+. .++-+|.|+..-..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV 153 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKV 153 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHH
Confidence 3579999999999999998889875 57777777765433
No 391
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=55.25 E-value=79 Score=24.42 Aligned_cols=59 Identities=8% Similarity=0.076 Sum_probs=36.9
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|+ +|.++..+++.. .+.+|++++.+++....+.+.++.. + .++.++.+|..+
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~Dl~~ 67 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA------G-GKAIGVAMDVTN 67 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc------C-ceEEEEECCCCC
Confidence 456775555 455555555432 3568999999998776666655432 1 357777777653
No 392
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=54.88 E-value=37 Score=23.12 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=29.6
Q ss_pred CCeEEEEcCccchHHHHHhhhCC------CCeEEEEECCHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP------STLILGLEIRVKVSDY 94 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p------~~~v~GvDis~~~i~~ 94 (170)
.-.||=+|||..+..+.-....+ ..+++..|.+++.+.+
T Consensus 24 ~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlAR 68 (100)
T PF14737_consen 24 DLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLAR 68 (100)
T ss_pred CceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHH
Confidence 46899999999996665544433 3689999999998654
No 393
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=54.82 E-value=26 Score=25.55 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=21.0
Q ss_pred CCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHH
Q psy13087 56 KVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVK 90 (170)
Q Consensus 56 ~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~ 90 (170)
..+|+|||-|.=. .+..|++. +..|+++|+++.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~ 47 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR 47 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc
Confidence 3599999999765 45555555 478999999998
No 394
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=54.54 E-value=37 Score=27.60 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=31.6
Q ss_pred CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
++.+||-.|||. |..+..+|+...-..+++++.+++..+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 467888899887 778888888763227999999888777544
No 395
>PRK08267 short chain dehydrogenase; Provisional
Probab=53.98 E-value=73 Score=24.78 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=33.7
Q ss_pred eEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++|=+|++ |.++..+++.+ .+.+|+.++.+++.++...+.+. ..++.++.+|+.+
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---------AGNAWTGALDVTD 59 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------CCceEEEEecCCC
Confidence 57777765 45555554432 25689999998876655544321 1357777777653
No 396
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=53.82 E-value=35 Score=30.58 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
++.+|+=+|||. |..++..|+... +.|+++|++++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence 478999999997 456667777764 589999999998887765
No 397
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=53.69 E-value=47 Score=26.83 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 54 EKKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 54 ~~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
.++..||-+||| .|..+..+|+.. +.++++++.+++..+.++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 346788888997 788888888875 468999999998877763
No 398
>PRK07109 short chain dehydrogenase; Provisional
Probab=53.30 E-value=98 Score=25.62 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=37.9
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+..||=.|++ |.++..+++.+ .+.+|+.++.+++.++...+.++.. + .++.++.+|+.+
T Consensus 8 ~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~------g-~~~~~v~~Dv~d 68 (334)
T PRK07109 8 RQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA------G-GEALAVVADVAD 68 (334)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------C-CcEEEEEecCCC
Confidence 4577777854 44555554433 3568999999988777666665442 1 357777777654
No 399
>KOG2666|consensus
Probab=52.96 E-value=14 Score=31.48 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=29.8
Q ss_pred eEEEEcCcc--chHHHHHhhhCCCCeEEEEECCHHHHH
Q psy13087 58 EFVDVGCGY--GGLLVTLSPMFPSTLILGLEIRVKVSD 93 (170)
Q Consensus 58 ~vLDiGCG~--G~~~~~la~~~p~~~v~GvDis~~~i~ 93 (170)
+|.-||.|+ |-...-+|.++|+..|+.||+|...+.
T Consensus 3 kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~ 40 (481)
T KOG2666|consen 3 KICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRIN 40 (481)
T ss_pred eEEEecCcccCCcchheeeecCCceEEEEEecCchHhh
Confidence 578889987 556777888999999999999987654
No 400
>PRK05876 short chain dehydrogenase; Provisional
Probab=52.72 E-value=1e+02 Score=24.55 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=37.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|=.|++ |.++..+|+.+ .+.+|+.++.+++.++.+.+.++.. + .++.++.+|+.+
T Consensus 6 ~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~------~-~~~~~~~~Dv~d 66 (275)
T PRK05876 6 GRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE------G-FDVHGVMCDVRH 66 (275)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------C-CeEEEEeCCCCC
Confidence 4678877775 44455555443 2568999999988776655544322 1 357777777654
No 401
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.69 E-value=60 Score=25.00 Aligned_cols=58 Identities=3% Similarity=0.029 Sum_probs=38.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.+||=.| |+|.++..+++.+ .+.+|++++.+++..+.....++.. ..++.++.+|..
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~ 63 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA-------GGKAIGVAMDVT 63 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEcCCC
Confidence 35666555 4677777777754 3568999999988776655554332 246777777765
No 402
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=52.63 E-value=1.2e+02 Score=27.68 Aligned_cols=68 Identities=9% Similarity=0.061 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCC--CCCCeEEEEcchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKG--QYENIACIRTNAMK 122 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~--~~~nv~~i~~d~~~ 122 (170)
..+..||=.|+ +|.++..+++.. .+.+|++++.+.+.+....+.+........+ ...++.++.+|+.+
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 35677887776 455666655543 3568999999988765554443321000000 01357888888764
No 403
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=52.60 E-value=95 Score=23.79 Aligned_cols=57 Identities=5% Similarity=0.082 Sum_probs=35.9
Q ss_pred eEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++|=.| |+|.++..+++.+ .+.+|++++.+++..+.....+... . .++.++.+|..+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------G-GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------C-CceEEEECCCCC
Confidence 455566 5677777777654 3568999999987665555443321 1 357777776653
No 404
>PRK07035 short chain dehydrogenase; Provisional
Probab=52.50 E-value=1.1e+02 Score=23.65 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=35.9
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+..+|=.|++.| ++..+++.+ .+.+|++++.+++..+...+.+... + .++.++.+|..+
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~D~~~ 68 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA------G-GKAEALACHIGE 68 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------C-CeEEEEEcCCCC
Confidence 456777887654 444444332 2568999999987766655555432 1 346666666653
No 405
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=52.39 E-value=50 Score=26.81 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 54 EKKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 54 ~~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
.++.+||-.|+| .|..++.+|+......+++++.+++..+.++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 346788888886 4778888888864337889988887766554
No 406
>PRK08862 short chain dehydrogenase; Provisional
Probab=52.28 E-value=99 Score=23.93 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=37.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++.+|=.|++.|. +..+++.+ .+.+|+.++.+++.++.+.+.+.+. + ..+....+|..
T Consensus 5 ~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~------~-~~~~~~~~D~~ 64 (227)
T PRK08862 5 SSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSAL------T-DNVYSFQLKDF 64 (227)
T ss_pred CeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------C-CCeEEEEccCC
Confidence 5678888888865 33333332 3678999999998887776665442 1 23555555544
No 407
>PRK12829 short chain dehydrogenase; Provisional
Probab=51.86 E-value=70 Score=24.75 Aligned_cols=56 Identities=7% Similarity=0.123 Sum_probs=34.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.++|=+|+. |.++..+++.. .+.+|++++.+++......+... .. ++.++.+|+.
T Consensus 11 ~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--------~~-~~~~~~~D~~ 68 (264)
T PRK12829 11 GLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--------GA-KVTATVADVA 68 (264)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--------cC-ceEEEEccCC
Confidence 5788888875 55566555543 24689999998876554333221 11 4566666655
No 408
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=51.85 E-value=30 Score=30.14 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=29.3
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~ 98 (170)
+|-=+|+|+=.+...+.-..-+..|+++|++++-++..++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g 42 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKG 42 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCC
Confidence 46668888877655444332245799999999998887754
No 409
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=51.83 E-value=82 Score=24.56 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=34.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|++. .++..+++.+ .+.+|+.++.+++.++...+.. ..++.++.+|+.+
T Consensus 6 ~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~ 63 (263)
T PRK06200 6 GQVALITGGGS-GIGRALVERFLAEGARVAVLERSAEKLASLRQRF----------GDHVLVVEGDVTS 63 (263)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCC
Confidence 46788888644 4455444433 3568999999987655443321 1346667777653
No 410
>PRK09072 short chain dehydrogenase; Provisional
Probab=51.80 E-value=82 Score=24.57 Aligned_cols=58 Identities=9% Similarity=0.057 Sum_probs=35.3
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|++. .++..+++.+ .+.+|++++.+++.++.....+ . .-.++.++.+|..+
T Consensus 5 ~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~-------~~~~~~~~~~D~~d 64 (263)
T PRK09072 5 DKRVLLTGASG-GIGQALAEALAAAGARLLLVGRNAEKLEALAARL-P-------YPGRHRWVVADLTS 64 (263)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h-------cCCceEEEEccCCC
Confidence 45778788664 4444444332 3568999999987766554443 1 11357777777653
No 411
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=51.57 E-value=27 Score=27.52 Aligned_cols=35 Identities=6% Similarity=0.118 Sum_probs=23.4
Q ss_pred EEEEcCccchHHHHHhhhCC--CCeEEEEECCHHHHHHH
Q psy13087 59 FVDVGCGYGGLLVTLSPMFP--STLILGLEIRVKVSDYV 95 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~p--~~~v~GvDis~~~i~~a 95 (170)
++=+||| .++..+|+... +.+|+.||.+++.+...
T Consensus 3 iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~ 39 (225)
T COG0569 3 IIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEF 39 (225)
T ss_pred EEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHH
Confidence 4445555 55555555432 34899999999987763
No 412
>PRK09273 hypothetical protein; Provisional
Probab=51.38 E-value=91 Score=24.73 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=25.0
Q ss_pred eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
...=++||||.-..-.|.++|+.. -|+=.++.....+++
T Consensus 65 d~GIliCGTGiG~siAANK~pGIr-aalc~d~~sA~lar~ 103 (211)
T PRK09273 65 DFVVTGCGTGQGAMLALNSFPGVV-CGYCIDPTDAYLFAQ 103 (211)
T ss_pred CEEEEEcCcHHHHHHHHhcCCCeE-EEEeCCHHHHHHHHH
Confidence 355589999998888899999842 222234444444443
No 413
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.33 E-value=77 Score=24.32 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=35.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.||. |.++..+++.+ .+.+|++++.+.+......+.+. . -.++.++.+|+.+
T Consensus 5 ~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~-------~~~~~~~~~D~~~ 64 (252)
T PRK06138 5 GRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A-------GGRAFARQGDVGS 64 (252)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c-------CCeEEEEEcCCCC
Confidence 4678888874 55555555432 25689999988776554444332 1 1357777777653
No 414
>PRK06196 oxidoreductase; Provisional
Probab=51.31 E-value=70 Score=25.99 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=27.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~ 96 (170)
+.+||=.|++ |.++.++++.+ .+.+|++++.+++..+.+.
T Consensus 26 ~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~ 67 (315)
T PRK06196 26 GKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREAL 67 (315)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4678888854 56666666643 3568999999987655443
No 415
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=51.10 E-value=48 Score=27.66 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
+++.+||=+|+|. |.++..+|+......|+++|.+++..+.+++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 3456777788764 4566667776543369999999998877754
No 416
>PRK09291 short chain dehydrogenase; Provisional
Probab=50.79 E-value=1.1e+02 Score=23.65 Aligned_cols=57 Identities=7% Similarity=-0.028 Sum_probs=33.5
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++||=.|++ |.++..+++.+ .+.+|+++..+++............ ..++.++.+|..
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~ 61 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-------GLALRVEKLDLT 61 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCcceEEEeeCC
Confidence 467878874 45555555432 3578999998877655444333221 124666666654
No 417
>PLN02827 Alcohol dehydrogenase-like
Probab=50.45 E-value=50 Score=27.81 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
.++.+||=+|+|. |.+++.+|+......++++|.+++..+.|+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 3468888888753 445566777664336999999988777664
No 418
>PTZ00357 methyltransferase; Provisional
Probab=50.20 E-value=45 Score=31.59 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=39.8
Q ss_pred CeEEEEcCccchHHHHHhhhC----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCC------CCCeEEEEcchhhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ------YENIACIRTNAMKY 123 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~------~~nv~~i~~d~~~~ 123 (170)
-.|+=+|+|-|-+.-...+.. -..++++||.++..+.....+.... ..+. -..|++|.+|....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~---eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAND---PEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcc---cccccccccCCCeEEEEeCccccc
Confidence 468999999999765544432 2458999999977555544442111 0011 13488888876553
No 419
>PRK07478 short chain dehydrogenase; Provisional
Probab=50.06 E-value=1.2e+02 Score=23.47 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=36.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++.+|=.|++ |.++..+++.+ .+.+|+.++.+++.++.+.+.++.. + .++.++.+|+.+
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~D~~~ 66 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE------G-GEAVALAGDVRD 66 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------C-CcEEEEEcCCCC
Confidence 4577777765 44444444433 2568999999988777666555432 1 357777777653
No 420
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=49.90 E-value=28 Score=30.90 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=36.0
Q ss_pred CCeEEEEcCccchHHHHHhhhCC----CCeEEEEECCHHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFP----STLILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p----~~~v~GvDis~~~i~~a~~~~~ 100 (170)
+..|.|.-||+|.++........ ...++|-|....+...|+.+..
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 46899999999999987654321 2469999999999999998853
No 421
>PRK07831 short chain dehydrogenase; Provisional
Probab=49.50 E-value=1.2e+02 Score=23.53 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=35.9
Q ss_pred CCeEEEEcC-ccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGC-GYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGC-G~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|. |.| ++..+++.+ .+.+|+.+|.+++.++.+.+.++.. .+..++.++.+|+.+
T Consensus 17 ~k~vlItG~sg~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 17 GKVVLVTAAAGTG-IGSATARRALEEGARVVISDIHERRLGETADELAAE-----LGLGRVEAVVCDVTS 80 (262)
T ss_pred CCEEEEECCCccc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-----cCCceEEEEEccCCC
Confidence 467777775 332 333333322 2567999999988777666655441 022357777777653
No 422
>PRK08265 short chain dehydrogenase; Provisional
Probab=49.27 E-value=95 Score=24.29 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=33.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|++ |.++..+++.+ .+.+|+.++.+++..+...+.+ . .++.++.+|+.+
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~-~~~~~~~~Dl~~ 63 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---------G-ERARFIATDITD 63 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------C-CeeEEEEecCCC
Confidence 4678888854 45555555543 3568999999876544333221 1 346677777653
No 423
>PRK08303 short chain dehydrogenase; Provisional
Probab=48.92 E-value=96 Score=25.32 Aligned_cols=32 Identities=6% Similarity=-0.088 Sum_probs=22.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECC
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIR 88 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis 88 (170)
++.+|=.|++.| ++..+|+.+ .+++|+.++.+
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecc
Confidence 578999997655 555555544 35789988887
No 424
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=48.88 E-value=1e+02 Score=25.04 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=34.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.++|=.|+. |.++..+++.+ .+.+|+.++.+.+..+.+.+.+.. .-.++.++.+|+.
T Consensus 6 ~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~~Dl~ 65 (322)
T PRK07453 6 KGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI-------PPDSYTIIHIDLG 65 (322)
T ss_pred CCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc-------cCCceEEEEecCC
Confidence 4678878864 55555555543 256899999887765554444321 1135666666654
No 425
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=48.70 E-value=54 Score=27.06 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCccch-HHHHHhhh-CCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGYGG-LLVTLSPM-FPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~-~~~~la~~-~p~~~v~GvDis~~~i~~a~~ 97 (170)
.++.+||=+|||.=. +++.++++ ....+++++|.+++-++.|++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 346899999986533 34555664 445689999999988777754
No 426
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=48.62 E-value=1.2e+02 Score=23.37 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=35.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+..+|=.| |+|.++..+++.+ .+.+|+.++.+++.+....+.+... + .++.++.+|..
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~------~-~~~~~~~~Dl~ 68 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE------G-IKAHAAPFNVT 68 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------C-CeEEEEecCCC
Confidence 45777777 4455666666544 3568999999987666555544331 1 24556666654
No 427
>PRK05866 short chain dehydrogenase; Provisional
Probab=48.42 E-value=1.3e+02 Score=24.17 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=37.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|++ |.++..+++.+ .+.+|+.++.+++.++...+.+... + ..+.++.+|+.+
T Consensus 40 ~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~-~~~~~~~~Dl~d 100 (293)
T PRK05866 40 GKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA------G-GDAMAVPCDLSD 100 (293)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------C-CcEEEEEccCCC
Confidence 4678888864 44455555432 2568999999988776655554332 1 246667777653
No 428
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=48.35 E-value=1e+02 Score=23.93 Aligned_cols=55 Identities=5% Similarity=0.035 Sum_probs=34.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+..+|=.| |+|.++..+++.+ .+.+|+.++.+.+..+...+.. ..++.++.+|+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~ 62 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI----------GPAAIAVSLDVT 62 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh----------CCceEEEEccCC
Confidence 35677777 5566666666654 3568999999887665443322 124666666654
No 429
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=48.06 E-value=1.3e+02 Score=23.45 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=36.9
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|++.|. +..+++.+ .+.+|+.++.+++.++.+.+.++.. ..++.++.+|..+
T Consensus 10 ~k~~lItGa~~~i-G~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~ 70 (265)
T PRK07097 10 GKIALITGASYGI-GFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL-------GIEAHGYVCDVTD 70 (265)
T ss_pred CCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCC
Confidence 4678888877543 33333322 2568999999988776665555432 1357777777654
No 430
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=47.78 E-value=59 Score=26.43 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
.++..||-.|+|. |..++.+|+.. +.+++++.-+++..+.++
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFAR 200 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHH
Confidence 3467888899875 77888888875 578999988888776653
No 431
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=47.76 E-value=18 Score=30.17 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=23.5
Q ss_pred eEEEEcCccchHHHHHhhh----CCCCeEEEEECCH
Q psy13087 58 EFVDVGCGYGGLLVTLSPM----FPSTLILGLEIRV 89 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~----~p~~~v~GvDis~ 89 (170)
..+=++||+|..+..++.. .|+.+|+|||...
T Consensus 186 d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 186 DSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 4566777777776655543 4889999999976
No 432
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=47.17 E-value=79 Score=23.80 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=33.6
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
..|+-||||.=.....+....++..++-||. +++++.-++.+.+.... ...+.+++.+|..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~---~~~~~~~v~~Dl~ 140 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGAR---PPANYRYVPADLR 140 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHH---HHEESSEEES-TT
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCccc---CCcceeEEecccc
Confidence 4899999999999999988766766666664 33444444444332110 0023455666665
No 433
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=46.60 E-value=47 Score=27.02 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=29.1
Q ss_pred CCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 56 KVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 56 ~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
+.++|=+|||. |.+++.+|+......++++|.+++.++.|.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 56777778763 557777888765445778899888766654
No 434
>KOG1269|consensus
Probab=46.35 E-value=28 Score=29.79 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=39.3
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
...++|.+|+.+.....+++.++-..--|+++..+.+..+..+-
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~ 224 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKK 224 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccC
Confidence 56899999999999999999998888999999999988876553
No 435
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.11 E-value=72 Score=26.15 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.++.+||=.|+| .|..++.+|+......++++|.+++..+.+++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 346778878876 45677777877643369999999887766653
No 436
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=45.90 E-value=87 Score=24.14 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=30.7
Q ss_pred cCc-cchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 63 GCG-YGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 63 GCG-~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
|+| ++.++..+|+.+ .+.+|+.++.+.+.++.+.+.+.+. .+ ..++.+|+.
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~-----~~---~~~~~~D~~ 54 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKE-----YG---AEVIQCDLS 54 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHH-----TT---SEEEESCTT
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHH-----cC---CceEeecCc
Confidence 455 344444444443 3679999999999875555555443 11 335777775
No 437
>PRK06940 short chain dehydrogenase; Provisional
Probab=45.78 E-value=1.5e+02 Score=23.59 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=35.7
Q ss_pred CeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|=-|+ |.++..+++.+ .+.+|+.++.+++.++.+.+.++.. + .++.++.+|+.+
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~-~~~~~~~~Dv~d 60 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------G-FDVSTQEVDVSS 60 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------C-CeEEEEEeecCC
Confidence 34555564 46777777765 3468999999887665554444321 1 357777777654
No 438
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=45.53 E-value=84 Score=25.44 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=34.6
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+++||=.| |+|.++..+++.. .+.+|+++..++............. +...++.++.+|+.+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~d 67 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALD-----GAKERLKLFKADLLD 67 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhcc-----CCCCceEEEeCCCCC
Confidence 46888888 5677777777654 3567888877765433221111100 111356777776653
No 439
>PRK08226 short chain dehydrogenase; Provisional
Probab=45.10 E-value=1.3e+02 Score=23.41 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=33.9
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|+. |.++..+++.+ .+.+|+.++.++...+.+ +.+... ..++.++.+|+.+
T Consensus 6 ~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~-~~~~~~-------~~~~~~~~~Dl~~ 65 (263)
T PRK08226 6 GKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLA-DELCGR-------GHRCTAVVADVRD 65 (263)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHH-HHHHHh-------CCceEEEECCCCC
Confidence 4678878874 55555555543 356899999887643322 222211 1356677777654
No 440
>KOG1253|consensus
Probab=44.33 E-value=10 Score=33.78 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 54 EKKVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.++.+|||-=|++|.-++..|+..|+. .+++-|.++.+|+..++|++.. +..+-|...+.|+..
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N-----~v~~ive~~~~DA~~ 172 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN-----GVEDIVEPHHSDANV 172 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc-----CchhhcccccchHHH
Confidence 346799999999999999999998876 7999999999999999998763 222335555666554
No 441
>KOG2671|consensus
Probab=44.20 E-value=15 Score=31.62 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHH
Q psy13087 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDY 94 (170)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~ 94 (170)
..+++.|.|==-|||.+++..|.- ++.|+|.||+-.++..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vra 245 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRA 245 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh--cceeeccccchheeec
Confidence 356899999999999999998865 5689999999998883
No 442
>PRK08589 short chain dehydrogenase; Validated
Probab=44.16 E-value=1.6e+02 Score=23.23 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=34.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|++.| ++..+++.+ .+.+|++++.+ +.++...+.+.+. ..++.++.+|+.+
T Consensus 6 ~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~-------~~~~~~~~~Dl~~ 65 (272)
T PRK08589 6 NKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN-------GGKAKAYHVDISD 65 (272)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc-------CCeEEEEEeecCC
Confidence 467777777554 444544433 35789999998 4444444444332 1357777777653
No 443
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=44.00 E-value=65 Score=25.69 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=29.7
Q ss_pred CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
++.+||=+|+|. |.+++.+|+......|+++|.+++..+.+++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 467888888753 4455667776543349999999887776654
No 444
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=43.75 E-value=1.5e+02 Score=22.77 Aligned_cols=56 Identities=4% Similarity=-0.006 Sum_probs=32.8
Q ss_pred eEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++|=.|+ +|.++..+++.. .+.+|+.++.++.......+.+... ..++.++.+|..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~ 59 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA-------GGKAVAYKLDVS 59 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEEcCCC
Confidence 3555664 455666555443 3568999998876655544444321 135677777764
No 445
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.71 E-value=95 Score=25.31 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=31.2
Q ss_pred CeEEEEcCccch--HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGG--LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102 (170)
Q Consensus 57 ~~vLDiGCG~G~--~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~ 102 (170)
.+|-=||+|+=. ++..++. .+..|+.+|.+++.++.+.+++++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~ 51 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKS 51 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHH
Confidence 367778887432 3333333 3678999999999999988876653
No 446
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=43.36 E-value=79 Score=25.49 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCe-EEEEECCHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTL-ILGLEIRVKVSDYVI 96 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~-v~GvDis~~~i~~a~ 96 (170)
.++.+||-+|+|. |..++.+|+... .+ +++++.+++..+.++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAK 201 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH
Confidence 3467899899863 778888888764 45 899999988777663
No 447
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=43.34 E-value=75 Score=26.20 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=23.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKV 91 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~ 91 (170)
+++||=.| |+|.++..+++.. .+.+|++++.++..
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPT 40 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 46788887 5566666665543 34689999987654
No 448
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=43.01 E-value=65 Score=28.10 Aligned_cols=42 Identities=12% Similarity=-0.126 Sum_probs=30.7
Q ss_pred CCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 55 ~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.+.+|+=+|||.=. .....++.. +++|+.+|+++.....|++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh
Confidence 47899999999844 444455554 5689999999887666653
No 449
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=42.93 E-value=80 Score=26.04 Aligned_cols=41 Identities=20% Similarity=0.079 Sum_probs=29.4
Q ss_pred CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEEC---CHHHHHHHH
Q psy13087 55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEI---RVKVSDYVI 96 (170)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDi---s~~~i~~a~ 96 (170)
++.+||=+|||. |.+++.+|+.. ++++++++. +++-.+.++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH
Confidence 467888889875 55677777776 458999997 566655554
No 450
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=42.81 E-value=51 Score=28.88 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=30.6
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.+|-=||=|+=.+-.+++-.-.+..|+|+||++..++..++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~ 50 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR 50 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC
Confidence 56777888877665555544456789999999999987764
No 451
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.58 E-value=1.1e+02 Score=24.08 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=23.0
Q ss_pred CCeEEEEcCcc-chHHHHHhhhC--CCCeEEEEECC
Q psy13087 56 KVEFVDVGCGY-GGLLVTLSPMF--PSTLILGLEIR 88 (170)
Q Consensus 56 ~~~vLDiGCG~-G~~~~~la~~~--p~~~v~GvDis 88 (170)
++.+|=.|.++ +.++.++|+.+ .+.+|+.++.+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 56889999873 66666666654 35678887654
No 452
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=42.51 E-value=1.2e+02 Score=21.49 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=35.5
Q ss_pred eEEEEcCccchHHHHHhhhC---CCCeEEEEECC--HHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF---PSTLILGLEIR--VKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~---p~~~v~GvDis--~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.+|=+|++. .++..+++.+ ....|+.+..+ .+..+.....+... + .++.++++|+.+
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~------~-~~~~~~~~D~~~ 63 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP------G-AKITFIECDLSD 63 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT------T-SEEEEEESETTS
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc------c-cccccccccccc
Confidence 455567664 4444444432 34578889988 56666555555542 2 689999998764
No 453
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=42.34 E-value=1.5e+02 Score=22.39 Aligned_cols=58 Identities=5% Similarity=0.013 Sum_probs=37.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
+.+||=.|+ +|.++..+++.+ .+..|++++.++.........++.. -.++.++.+|+.
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~ 64 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA-------GGEARVLVFDVS 64 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc-------CCceEEEEccCC
Confidence 357887775 677777766553 2457999999987666554444332 135667777765
No 454
>PRK05872 short chain dehydrogenase; Provisional
Probab=42.07 E-value=1.7e+02 Score=23.49 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=27.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~ 98 (170)
+..+|=.|++. .++..+++.+ .+.+|+.++.+++.++...+.
T Consensus 9 gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~ 52 (296)
T PRK05872 9 GKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAE 52 (296)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 56788888554 4445545443 356899999998866554433
No 455
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=41.85 E-value=93 Score=25.19 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=28.4
Q ss_pred CeEEEEcCcc-ch-HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087 57 VEFVDVGCGY-GG-LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 57 ~~vLDiGCG~-G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~ 100 (170)
.+|.=||||. |. ++..++.. +..|+.+|.+++.++.+++++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 3577788884 32 33333333 5689999999999988766543
No 456
>PRK07806 short chain dehydrogenase; Provisional
Probab=41.62 E-value=1.6e+02 Score=22.53 Aligned_cols=59 Identities=7% Similarity=0.081 Sum_probs=32.9
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHH-HHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVK-VSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~-~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=.|+. |.++..+++.+ .+.+|+++..+.. ..+.....++.. + .++.++.+|+.+
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~-~~~~~~~~D~~~ 67 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA------G-GRASAVGADLTD 67 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc------C-CceEEEEcCCCC
Confidence 4678888863 44555555533 3568998887643 333333333221 1 356777777653
No 457
>PRK05855 short chain dehydrogenase; Validated
Probab=40.95 E-value=1.7e+02 Score=25.57 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=38.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=+|+ +|.++..+++.+ .+.+|+.++.+.+..+.+.+.++.. + .++.++.+|+.+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~Dv~~ 375 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA------G-AVAHAYRVDVSD 375 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------C-CeEEEEEcCCCC
Confidence 456776776 566666666544 3568999999987776665555432 1 357777777764
No 458
>PRK05993 short chain dehydrogenase; Provisional
Probab=40.94 E-value=1.1e+02 Score=24.21 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=25.6
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSD 93 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~ 93 (170)
+++||=.|+ +|.++..+++.+ .+.+|++++.+++.++
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVA 42 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 357888887 456666666543 3568999999887654
No 459
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=40.47 E-value=53 Score=26.31 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=22.6
Q ss_pred HHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 69 LLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 69 ~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
++..+.+..+...|+|+|.+++.++.|.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence 35667777778899999999999888754
No 460
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=40.42 E-value=1e+02 Score=25.65 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
++.+||=.|+|. |..++.+|+......++++|.+++..+.++
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 457788788764 667777888764336999999988766554
No 461
>KOG1252|consensus
Probab=40.40 E-value=43 Score=28.58 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCeEEEEcCccch----HHHHHhhhCCCCeEEEEECCHHHHH
Q psy13087 56 KVEFVDVGCGYGG----LLVTLSPMFPSTLILGLEIRVKVSD 93 (170)
Q Consensus 56 ~~~vLDiGCG~G~----~~~~la~~~p~~~v~GvDis~~~i~ 93 (170)
...++=.|.|||. .+.++.++.|+++|+|+|-....+-
T Consensus 212 ~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~ 253 (362)
T KOG1252|consen 212 KVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVL 253 (362)
T ss_pred CCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceec
Confidence 4567778888886 5677888899999999999888654
No 462
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=40.28 E-value=1.8e+02 Score=22.80 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=35.8
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+..+|=.|++. .++..+++.+ .+.+|+.++.+++..+...+.+... ..++.++.+|..+
T Consensus 10 ~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~ 70 (278)
T PRK08277 10 GKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA-------GGEALAVKADVLD 70 (278)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCC
Confidence 46777777654 3444444432 3568999999987665554444321 1357777787654
No 463
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.23 E-value=1e+02 Score=25.07 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=29.3
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~ 99 (170)
.+|.=||+|.=...+..+-...+..|+++|.+++.++.+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 4577788886443333333334568999999999998887754
No 464
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=40.19 E-value=83 Score=26.10 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=33.5
Q ss_pred CCCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 54 EKKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 54 ~~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
.++.+||=.|+ |.|.+++.+|+.. +.++++++.+++-.+.++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH
Confidence 34688988887 4788889999886 568999999988776664
No 465
>PRK06198 short chain dehydrogenase; Provisional
Probab=40.12 E-value=1.6e+02 Score=22.68 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=34.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCe-EEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTL-ILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~-v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++++|=.|+ +|.++..+++.+ .+.+ |+.++.+++........+... -.++.++.+|+.
T Consensus 6 ~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~ 66 (260)
T PRK06198 6 GKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL-------GAKAVFVQADLS 66 (260)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEEccCC
Confidence 467888885 444666665543 2456 999999876555433333221 134666667665
No 466
>PRK07832 short chain dehydrogenase; Provisional
Probab=40.04 E-value=1e+02 Score=24.22 Aligned_cols=41 Identities=5% Similarity=-0.035 Sum_probs=24.2
Q ss_pred EEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHH
Q psy13087 59 FVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~ 100 (170)
+|=.|. +|.++..+++.+ .+.+|+.++.+++.++.+.+.+.
T Consensus 3 vlItGa-s~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~ 45 (272)
T PRK07832 3 CFVTGA-ASGIGRATALRLAAQGAELFLTDRDADGLAQTVADAR 45 (272)
T ss_pred EEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 444554 344555544432 35689999998877665555443
No 467
>PRK06139 short chain dehydrogenase; Provisional
Probab=39.98 E-value=1.9e+02 Score=23.96 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++.||=.|++ |.++..+++.+ .+.+|+.++.+++.++...+.++.. + .++.++.+|+.
T Consensus 7 ~k~vlITGAs-~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~------g-~~~~~~~~Dv~ 66 (330)
T PRK06139 7 GAVVVITGAS-SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL------G-AEVLVVPTDVT 66 (330)
T ss_pred CCEEEEcCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------C-CcEEEEEeeCC
Confidence 4678877774 44444444432 3568999999998877766665543 1 34666666665
No 468
>PRK06180 short chain dehydrogenase; Provisional
Probab=39.85 E-value=1.6e+02 Score=23.16 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=24.3
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSD 93 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~ 93 (170)
+..+|=.|++. .++..+++.+ .+.+|++++.+++.++
T Consensus 4 ~~~vlVtGasg-giG~~la~~l~~~G~~V~~~~r~~~~~~ 42 (277)
T PRK06180 4 MKTWLITGVSS-GFGRALAQAALAAGHRVVGTVRSEAARA 42 (277)
T ss_pred CCEEEEecCCC-hHHHHHHHHHHhCcCEEEEEeCCHHHHH
Confidence 35788888754 4455444432 3568999999887654
No 469
>KOG0822|consensus
Probab=39.77 E-value=1.6e+02 Score=27.02 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=42.1
Q ss_pred CCeEEEEcCccchHHHHH---hhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087 56 KVEFVDVGCGYGGLLVTL---SPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~l---a~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~ 123 (170)
...|+=+|.|.|-+.-.. |+.. ...++++||.+|.++.....+--+ .=...|+++.+|....
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~------~W~~~Vtii~~DMR~w 433 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE------CWDNRVTIISSDMRKW 433 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh------hhcCeeEEEecccccc
Confidence 346788999999876443 3322 346899999999999877653221 1125688888886643
No 470
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=39.57 E-value=1.7e+02 Score=22.79 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=33.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+..+|=.|++ |.++..+++.+ .+.+|+.++.+.+.++...+. ...++.++.+|+.+
T Consensus 5 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~----------~~~~~~~~~~D~~~ 62 (262)
T TIGR03325 5 GEVVLVTGGA-SGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA----------HGDAVVGVEGDVRS 62 (262)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----------cCCceEEEEeccCC
Confidence 4677778864 44555555543 357899999987655443221 11356667776653
No 471
>PRK06101 short chain dehydrogenase; Provisional
Probab=39.26 E-value=80 Score=24.35 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=31.3
Q ss_pred eEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 58 EFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.+|=.|+ +|.++..+++.+ .+.+|+.++.+++..+..... ..++.++.+|+.+
T Consensus 3 ~vlItGa-s~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~D~~~ 57 (240)
T PRK06101 3 AVLITGA-TSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ-----------SANIFTLAFDVTD 57 (240)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh-----------cCCCeEEEeeCCC
Confidence 4555554 566666666543 356899999987654332211 1356677777654
No 472
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=38.67 E-value=1e+02 Score=25.57 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.++.+||=.|+|. |.+++.+|+.....+|++++.+++..+.+++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3467787788652 3355667776643379999999988777643
No 473
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=38.53 E-value=1.5e+02 Score=22.83 Aligned_cols=58 Identities=10% Similarity=0.007 Sum_probs=32.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
++++|=.|++ |.++..+++.+ .+.+|+.++.++.. ....+.+... ..++.++.+|+.+
T Consensus 8 ~k~vlVtGas-~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~-------~~~~~~~~~D~~~ 67 (260)
T PRK12823 8 GKVVVVTGAA-QGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAA-------GGEALALTADLET 67 (260)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhc-------CCeEEEEEEeCCC
Confidence 4678888865 44555555433 35689999988642 2222333221 1346667777654
No 474
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=38.46 E-value=1e+02 Score=24.22 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=31.3
Q ss_pred CCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 55 KKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 55 ~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
++..|+-.|| +.|..+..+|+.. ++.+++++.+++..+.++
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALAR 181 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHH
Confidence 4678999998 4667777777765 568999999888766653
No 475
>PRK12828 short chain dehydrogenase; Provisional
Probab=38.39 E-value=1.5e+02 Score=22.35 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=24.5
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDY 94 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~ 94 (170)
++++|=.| |+|.++..+++.+ .+.+|++++.++.-...
T Consensus 7 ~k~vlItG-atg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 7 GKVVAITG-GFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CCEEEEEC-CCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 35666666 4466666666543 35689999997765443
No 476
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.37 E-value=1.2e+02 Score=24.47 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=29.5
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA 100 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~ 100 (170)
.+|.=||+|.=...+...-...+..|+.+|.+++.++.+.+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45777888854433333333335689999999999988766543
No 477
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.19 E-value=1.1e+02 Score=24.51 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=28.3
Q ss_pred eEEEEcCcc--chHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087 58 EFVDVGCGY--GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101 (170)
Q Consensus 58 ~vLDiGCG~--G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~ 101 (170)
+|.=||+|. +.++..++.. +.+|+++|++++.++.+.++++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~ 48 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITK 48 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHH
Confidence 466678874 3344444443 46899999999999877655443
No 478
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.06 E-value=1.8e+02 Score=22.05 Aligned_cols=58 Identities=7% Similarity=0.189 Sum_probs=36.3
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEE-ECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGL-EIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~Gv-Dis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.++|=+|+ +|.++..+++.+ .+.+++.+ +.+++........+... -.++.++.+|+.+
T Consensus 6 ~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~ 66 (247)
T PRK05565 6 KVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------GGDAIAVKADVSS 66 (247)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------CCeEEEEECCCCC
Confidence 46776774 677777766643 35688888 88877665544443321 1357777777654
No 479
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=38.02 E-value=1.8e+02 Score=22.26 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred CCeEEEEcCcc-ch-HHHHHhhhCCCCeEEEEECC
Q psy13087 56 KVEFVDVGCGY-GG-LLVTLSPMFPSTLILGLEIR 88 (170)
Q Consensus 56 ~~~vLDiGCG~-G~-~~~~la~~~p~~~v~GvDis 88 (170)
+.+|+=+|||. |. .+..|+.. .-.+++.+|-+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 57899999984 44 44444544 33478999976
No 480
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=37.65 E-value=1.2e+02 Score=23.36 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=29.9
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDR 98 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~ 98 (170)
+++|+=+|+| .++..+|+.. .+.+|+++|.+++.+....+.
T Consensus 28 gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 28 GKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 5789999997 5666665543 356899999999877665543
No 481
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=37.42 E-value=1.4e+02 Score=24.55 Aligned_cols=35 Identities=9% Similarity=-0.044 Sum_probs=25.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKV 91 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~ 91 (170)
+++||=.| |+|.++..+++.. .+.+|++++.+...
T Consensus 10 ~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (353)
T PLN02896 10 TGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAK 46 (353)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 57888888 4677777777754 35689998887653
No 482
>PRK06114 short chain dehydrogenase; Provisional
Probab=37.40 E-value=1.9e+02 Score=22.31 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=34.0
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHH-HHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVK-VSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~-~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++.+|=.| |+|.++..+++.+ .+.+|+.++.+.+ .++...+.++.. ..++.++.+|+.
T Consensus 8 ~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~ 68 (254)
T PRK06114 8 GQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA-------GRRAIQIAADVT 68 (254)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------CCceEEEEcCCC
Confidence 46788777 4555666666643 3568999998753 334333333321 135666777664
No 483
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=37.01 E-value=47 Score=28.91 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=26.4
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
.+|-=||.|+=.+..+..-. .+.+|+|+|++++.++..+
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-KSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-cCCEEEEEeCCHHHHHHHH
Confidence 56666777664443333322 2468999999999988876
No 484
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=36.98 E-value=86 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=27.8
Q ss_pred CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYV 95 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a 95 (170)
++|.=||.|+-...++.+-...+.+|+|+|++++.++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 467778888766555544333356899999999988863
No 485
>KOG2918|consensus
Probab=36.92 E-value=56 Score=27.64 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHH
Q psy13087 55 KKVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYV 95 (170)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a 95 (170)
....|+.+|||+-.+...|-..+ +...++=||.++....++
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 35789999999999999998887 556777777776655554
No 486
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.85 E-value=1.9e+02 Score=22.13 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=33.5
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCH-HHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRV-KVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~-~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.+|=.| |+|.++..+++.+ .+.+|++++.+. +......+.++.. ..++.++.+|+.+
T Consensus 3 k~vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~ 63 (256)
T PRK12745 3 PVALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL-------GVEVIFFPADVAD 63 (256)
T ss_pred cEEEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhc-------CCceEEEEecCCC
Confidence 4577667 5677777666554 256899998753 3323232333221 1367777777764
No 487
>PRK06182 short chain dehydrogenase; Validated
Probab=36.82 E-value=1.3e+02 Score=23.52 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=25.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSD 93 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~ 93 (170)
++.+|=.|+ +|.++..+++.+ .+.+|++++.+++.+.
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~ 41 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKME 41 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 467887885 455666666653 3568999998876543
No 488
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.74 E-value=1.6e+02 Score=23.15 Aligned_cols=34 Identities=3% Similarity=-0.095 Sum_probs=23.2
Q ss_pred CCeEEEEcC-ccchHHHHHhhhC--CCCeEEEEECCH
Q psy13087 56 KVEFVDVGC-GYGGLLVTLSPMF--PSTLILGLEIRV 89 (170)
Q Consensus 56 ~~~vLDiGC-G~G~~~~~la~~~--p~~~v~GvDis~ 89 (170)
+..+|=.|+ |++.++.++|+.+ .+.+|+....+.
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~ 42 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGAELAFTYVVD 42 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH
Confidence 467888897 4666777777654 356788776654
No 489
>PRK08263 short chain dehydrogenase; Provisional
Probab=36.51 E-value=2.1e+02 Score=22.51 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=26.0
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHH
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYV 95 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a 95 (170)
+.||=.|+ +|.++..+++.+ .+..|++++.+++.+...
T Consensus 4 k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~ 43 (275)
T PRK08263 4 KVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADL 43 (275)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 46777774 566666666643 356899999988765543
No 490
>PRK08628 short chain dehydrogenase; Provisional
Probab=36.49 E-value=1.9e+02 Score=22.28 Aligned_cols=58 Identities=9% Similarity=0.070 Sum_probs=34.7
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+..+|=.|. +|.++..+++.+ .+.+++.++.+++.. ...+.+... ..++.++.+|+.+
T Consensus 7 ~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~-------~~~~~~~~~D~~~ 66 (258)
T PRK08628 7 DKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRAL-------QPRAEFVQVDLTD 66 (258)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhc-------CCceEEEEccCCC
Confidence 456777775 455666666543 356788888887765 222333221 1357777777653
No 491
>PRK08324 short chain dehydrogenase; Validated
Probab=35.94 E-value=1.6e+02 Score=27.18 Aligned_cols=57 Identities=5% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM 121 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~ 121 (170)
++.+|=.|++ |.++..+++.+ .+.+|+.+|.+++..+.+.+.+.. . .++.++.+|+.
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~-~~v~~v~~Dvt 480 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------P-DRALGVACDVT 480 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------c-CcEEEEEecCC
Confidence 5788888864 33444444332 256899999998876655544321 1 35677777755
No 492
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.84 E-value=2e+02 Score=21.91 Aligned_cols=58 Identities=9% Similarity=0.105 Sum_probs=34.4
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+.++|=+|+. |.++..+++.+ .+.+|++++.+++-.......+.. ..++.++.+|+.+
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~D~~~ 64 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA--------GGRAIAVAADVSD 64 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--------CCeEEEEECCCCC
Confidence 3567767654 45555555432 256899999998766554443321 1346777777653
No 493
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=35.83 E-value=1.2e+02 Score=23.38 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=30.1
Q ss_pred EEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 59 FVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 59 vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
||=+| |+|.++..+++.+ .+.+|++++.+++.+......+ + .++.++.+|+.+
T Consensus 3 vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~-~~~~~~~~Dl~~ 57 (248)
T PRK10538 3 VLVTG-ATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---------G-DNLYIAQLDVRN 57 (248)
T ss_pred EEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------c-cceEEEEecCCC
Confidence 44444 3455555555543 3568999999987554433221 1 246666666653
No 494
>PRK06482 short chain dehydrogenase; Provisional
Probab=35.46 E-value=2.2e+02 Score=22.31 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=33.6
Q ss_pred CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
+++|=.|+ +|.++..++... .+.+|++++.+++.++...+.. ..++.++.+|+.+
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~ 59 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY----------GDRLWVLQLDVTD 59 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------cCceEEEEccCCC
Confidence 35676666 566666666543 3568999999887655433221 1356677776653
No 495
>KOG1371|consensus
Probab=35.43 E-value=1.4e+02 Score=25.52 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=37.1
Q ss_pred CeEEEEcCccchHH--HHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087 57 VEFVDVGCGYGGLL--VTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK 122 (170)
Q Consensus 57 ~~vLDiGCG~G~~~--~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~ 122 (170)
.+||=.| |.|.++ ..++....+..|++||--......+-++++.+. .....|.|.++|..+
T Consensus 3 ~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~----~~~~~v~f~~~Dl~D 65 (343)
T KOG1371|consen 3 KHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLL----GEGKSVFFVEGDLND 65 (343)
T ss_pred cEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhc----CCCCceEEEEeccCC
Confidence 3455554 333332 223333346789999987777777777776651 112579999998775
No 496
>KOG1562|consensus
Probab=35.18 E-value=76 Score=26.79 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~ 125 (170)
.++||=||-|.|.+....+++ +.. +++-+|++...++..++-...+.+.. .-+.|.++-+|...++.
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy--~~~~v~l~iGDG~~fl~ 189 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGY--EGKKVKLLIGDGFLFLE 189 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhccc--CCCceEEEeccHHHHHH
Confidence 578999999999999999887 433 79999999999999888776653321 12468888888877664
No 497
>PRK06179 short chain dehydrogenase; Provisional
Probab=35.15 E-value=1.1e+02 Score=23.91 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=23.2
Q ss_pred CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHH
Q psy13087 56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVK 90 (170)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~ 90 (170)
+..+|=.|+ +|.++..+++.+ .+.+|++++.+++
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~ 39 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPA 39 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 357888885 566677766543 3568888888764
No 498
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=35.07 E-value=1.3e+02 Score=24.59 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087 54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI 96 (170)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~ 96 (170)
.++.+||=.|+|. |..+..+|+......+++++-+++..+.++
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~ 204 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK 204 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 3466777788876 778888888865323899988887766553
No 499
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=35.02 E-value=1.3e+02 Score=24.33 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=30.6
Q ss_pred CCCeEEEEcCcc-chHHHHHhhhCCCCe-EEEEECCHHHHHHH
Q psy13087 55 KKVEFVDVGCGY-GGLLVTLSPMFPSTL-ILGLEIRVKVSDYV 95 (170)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~-v~GvDis~~~i~~a 95 (170)
++..||-.|+|. |..+..+|+... .. +++++-+++..+.+
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVA 200 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHH
Confidence 467888889876 778888888764 55 99999888776655
No 500
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=34.87 E-value=1.2e+02 Score=24.69 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087 54 EKKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID 97 (170)
Q Consensus 54 ~~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~ 97 (170)
.++.+||=.|+ |.|.+++.+|+.. +.++++++.+++-.+.+++
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence 45688888886 6788888999886 5689999998887776654
Done!