RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13087
(170 letters)
>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase. This is a
family of putative methyltransferases. The aligned
region contains the GXGXG S-AdoMet binding site
suggesting a putative methyltransferase activity.
Length = 198
Score = 93.9 bits (234), Expect = 2e-24
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 40 DWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99
DW L+ E+ + F+++GCG G LV ++ P L +G+EIRV D + ++
Sbjct: 12 DWQALFGN------EQPL-FLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKI 64
Query: 100 AALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139
ALR +N+ + +AMK LPN F +++ F N
Sbjct: 65 IALR-----GLQNLRILCGDAMKLLPNLFPDGSLQKIFIN 99
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 84.3 bits (209), Expect = 2e-20
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 9 QLPQKRYYRQRAHSNPIADHSVEYPPSPNDM--DWSPLYPELKDPTCEKKVEFVDVGCGY 66
++R +A N + D+ P + DWS L+ P +++G G
Sbjct: 6 SFVRRRLRLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPI------VLEIGFGM 59
Query: 67 GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN 126
G LV ++ P LG+EIRV + ++ L + N+ + +A++ L
Sbjct: 60 GEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK------NLRLLCGDAVEVLDY 113
Query: 127 YFRKAQVRRCFAN 139
+ + + N
Sbjct: 114 LIPDGSLDKIYIN 126
>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase. This
predicted S-adenosylmethionine-dependent
methyltransferase is found in a single copy in most
Bacteria. It is also found, with a short amino-terminal
extension in eukaryotes. Its function is unknown. In E.
coli, this protein flanks the DNA repair protein MutY,
also called micA [Protein synthesis, tRNA and rRNA base
modification].
Length = 194
Score = 61.6 bits (150), Expect = 2e-12
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 40 DWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99
D+S P+ K +++GCG G L+ ++ P LG+EI ++ +
Sbjct: 1 DYSLDKPDFATVFGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIH----TPIV--L 54
Query: 100 AALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139
AA NK +N+ + +A + L +F + + F N
Sbjct: 55 AANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94
>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.
Length = 202
Score = 40.5 bits (96), Expect = 1e-04
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
+++G G G LV ++ P +G+E+ V AL+ + N+ + +
Sbjct: 45 LEIGFGKGEFLVEMAKANPDINFIGIEVHEPG---V---GKALKKIEEEGLTNLRLLCGD 98
Query: 120 AMKYLPNYFRKAQVRR 135
A++ L + F + R
Sbjct: 99 AVEVLLDMFPDGSLDR 114
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 33.5 bits (77), Expect = 0.011
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA-LRSQNKGQYENIACIRT 118
+D+GCG G LL L P G++I S ++ A L + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDI----SPAALEAAAERLAALGLLDAVRVRLDVL 56
Query: 119 NAMKYLPNYF 128
+A+ P F
Sbjct: 57 DAIDLDPGSF 66
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 33.2 bits (76), Expect = 0.023
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
+D G G G L+ + P ++G+E+ D +A R G + + +
Sbjct: 5 LDPGAGSGAFLLAAARAGPDARVVGVEL-----DPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 120 AMKYLPNYFRKAQVRRCFAN 139
A + L N
Sbjct: 60 ARELLE--LPDGSFDLVLGN 77
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 32.7 bits (75), Expect = 0.025
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIR 88
+D+GCG G L + L+ +FP + G+++
Sbjct: 6 LDIGCGTGSLAIELARLFPGARVTGVDLS 34
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 32.4 bits (74), Expect = 0.047
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 54 EKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN 112
+ ++ +D+GCG G L L+ P ++G++I S+ I A ++ G YEN
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDI----SEEAI-EKAKENAKKLG-YEN 55
Query: 113 IACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIR 153
+ I+ + + +N +LN + +
Sbjct: 56 VEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLE 96
>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase.
Length = 322
Score = 31.6 bits (71), Expect = 0.18
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 49 KDPTCEKKVE---FVDVGCGYGGLL 70
KDP+ K E F+D+GCG GGLL
Sbjct: 122 KDPSSAKPFEGLKFIDIGCG-GGLL 145
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 29.5 bits (67), Expect = 0.57
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
D+G G G + + + PS ++ +E + + +I+R AA + +N+ +
Sbjct: 38 LWDIGAGTGSITIEWALAGPSGRVIAIERDEEALE-LIERNAA-----RFGVDNLEVVEG 91
Query: 119 NAMKYLPNY 127
+A + LP+
Sbjct: 92 DAPEALPDL 100
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 97
Score = 28.1 bits (63), Expect = 0.95
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIR 88
+D+GCG G +L L+ PS++ G++I
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVT-GVDIS 29
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 27.8 bits (62), Expect = 1.5
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENI 113
+D+GCG G L + L+ P + G++I S ++ A ++ +N+
Sbjct: 2 VLDLGCGTGALALALAS-GPGARVTGVDI----SPVALEL--ARKAAAALLADNV 49
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 28.7 bits (64), Expect = 1.5
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
VDVG G G +L + I G++I S+ VID + + QN+G+ N+ I+ +
Sbjct: 423 VDVGAGGGVMLDMIEEETEDKRIYGIDI----SENVIDTLKK-KKQNEGRSWNV--IKGD 475
Query: 120 AMKYLPNYFRKAQVRRCFANCILNSQYENI 149
A+ L + F K V + IL+ + I
Sbjct: 476 AIN-LSSSFEKESVDTIVYSSILHELFSYI 504
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 28.4 bits (64), Expect = 1.6
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 36/96 (37%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLI------------------LGLEIRVKV--SDYVI---- 96
D+GCG+GGL + + + T++ GLE V+V DY
Sbjct: 78 DIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137
Query: 97 -DRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA 131
DR+ ++ G +E++ + ++F+K
Sbjct: 138 FDRIVSV-----GMFEHV------GKENYDDFFKKV 162
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 27.8 bits (62), Expect = 2.2
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
+D+GCG G LL L + G++ A + G+Y+ I
Sbjct: 26 VLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVLAGKYDLITAFEV 83
Query: 119 -NAMKYLPNYFRKA 131
+ P ++
Sbjct: 84 LEHLPDPPALLQQL 97
>gnl|CDD|183691 PRK12701, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 230
Score = 28.2 bits (62), Expect = 2.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 32 YPPSPNDM-DWSPLYPELKDPTCEKKV 57
+PP+P D D++P YP DP +KV
Sbjct: 23 HPPAPGDNPDYAPTYPVTPDPKELRKV 49
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase.
This model represents an O-methyltransferase believed
to act at two points in the ubiquinone biosynthetic
pathway in bacteria (UbiG) and fungi (COQ3). A separate
methylase (MenG/UbiE) catalyzes the single
C-methylation step. The most commonly used names for
genes in this family do not indicate whether this gene
is an O-methyl, or C-methyl transferase [Biosynthesis
of cofactors, prosthetic groups, and carriers,
Menaquinone and ubiquinone].
Length = 224
Score = 27.6 bits (62), Expect = 2.5
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 49 KDPTCEKKVEFVDVGCGYGGLL 70
K P +V +DVGCG GGLL
Sbjct: 41 KKPLFGLRV--LDVGCG-GGLL 59
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 27.6 bits (62), Expect = 2.7
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR--VAALRSQNKGQYENIACIR 117
+++G G G L T L L+ KV+ IDR LR + YEN+ I
Sbjct: 34 LEIGPGLGAL----------TEPL-LKRAKKVTAIEIDRRLAERLR-KLLSLYENLEIIE 81
Query: 118 TNAMKYLPNYFRKAQVRRCFAN 139
+A+K N F + + +N
Sbjct: 82 GDALKVDLNEF--PKQLKVVSN 101
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 26.5 bits (59), Expect = 3.6
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
+DVGCG G L L+ + + G+++ S ++ + + +
Sbjct: 1 LDVGCGTGLLAEALARRGGARVT-GVDL----SPEMLALAR--------KRAPRKFVVGD 47
Query: 120 AMK--YLPNYF 128
A + F
Sbjct: 48 AEDLPFPDESF 58
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase
C as well as other methyltransferases .
Length = 170
Score = 26.8 bits (60), Expect = 4.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEI 87
+D+GCGYG L L+ P + ++I
Sbjct: 35 VLDLGCGYGVLGAALAKRSPDLEVTMVDI 63
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 27.2 bits (60), Expect = 4.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 62 VGCGYGGLLVTLSPMFP---STLILGLEIRVKVSDYVIDRVAALR 103
V G+GG TL+P + LILG E + + ++DR A R
Sbjct: 341 VATGHGGHGFTLAPALGRLLADLILGGEPELDLRPLLLDRFAPGR 385
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 27.3 bits (61), Expect = 4.7
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 87 IRVKVSDYVIDRVAALRSQNKGQYEN--IACIRTNAMKYLPNYFRKAQVR 134
IRVK + VI R + Q E+ + +R MK +PN Q +
Sbjct: 319 IRVKHTAKVIKRSRKIGKI--AQIESKLLVALRNRVMKRMPNALAAGQTK 366
>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 27.5 bits (61), Expect = 4.9
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 16 YRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDP-----TCEKK-VEFVDVGCGYGGL 69
R ++SN I D YP S D S P+ K+ E K +++ + Y +
Sbjct: 872 LRVTSNSNDIVDKEFTYPSSLCDNLLSRSSPKPKNNFDDTVFIEYKSIDYDVLDSVYEEV 931
Query: 70 LVTLSPMFPSTLILGLEIR 88
T++ + S LIL LE
Sbjct: 932 DTTIA-VVLSDLILNLEPT 949
>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase/tRNA
(m7G46) methyltransferase; Reviewed.
Length = 506
Score = 27.1 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEI 87
EK+ F+++G G G + + M P L +G+E+
Sbjct: 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEV 379
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 26.8 bits (59), Expect = 6.4
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 4 EERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYP 46
EERT+ K Y + A +A + SP+ W P P
Sbjct: 505 EERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIP 547
>gnl|CDD|217966 pfam04209, HgmA, homogentisate 1,2-dioxygenase. Homogentisate
dioxygenase cleaves the aromatic ring during the
metabolic degradation of Phe and Tyr. Homogentisate
dioxygenase deficiency causes alkaptonuria. The
structure of homogentisate dioxygenase shows that the
enzyme forms a hexamer arrangement comprised of a dimer
of trimers. The active site iron ion is coordinated near
the interface between the trimers.
Length = 422
Score = 26.6 bits (59), Expect = 6.9
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 16 YRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVD 61
+ R + A+ S E+ P PN + W P ++ +FV+
Sbjct: 67 FFPRKGQHKTAEWS-EWHPDPNQLRWKPF-----PIPSKEPTDFVE 106
>gnl|CDD|218603 pfam05482, Serendipity_A, Serendipity locus alpha protein (SRY-A).
The Drosophila serendipity alpha (sry alpha) gene is
specifically transcribed at the blastoderm stage, from
nuclear cycle 11 to the onset of gastrulation, in all
somatic nuclei. SRY-A is required for the
cellularisation of the embryo and is involved in the
localisation of the actin filaments just prior to and
during plasma membrane invagination.
Length = 549
Score = 26.8 bits (59), Expect = 7.0
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 1 METEERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWS 42
M RTL + + RQR+ D +V P+P + S
Sbjct: 490 MTNATRTLLRSKSKSKRQRSFVKQEIDCTV---PNPQNTSIS 528
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate
(PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP),
an intermediate in the shikimate pathway leading to
aromatic amino acid biosynthesis. The reaction is
phosphoenolpyruvate + 3-phosphoshikimate = phosphate +
5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in
bacteria and plants but not animals. The enzyme is the
target of the widely used herbicide glyphosate, which
has been shown to occupy the active site. In bacteria
and plants, it is a single domain protein, while in
fungi, the domain is found as part of a multidomain
protein with functions that are all part of the
shikimate pathway.
Length = 409
Score = 26.8 bits (60), Expect = 7.0
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 99 VAALRSQNKGQYENIACIRTNAMKYLPNYFR 129
+A L ++ E+ C+ K PN+F
Sbjct: 378 IAGLVAEGGVTIEDPECVA----KSFPNFFE 404
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 25.7 bits (57), Expect = 8.0
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLE--------IRVKVSDYVIDRVAALRS 104
D+G G G + + + + P+ + +E I + + + + +
Sbjct: 23 LWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSNIVIVEG 76
>gnl|CDD|99875 cd06064, H2MP_F420-Reduc, Endopeptidases belonging to F420-reducing
hydrogenases group. These hydrogenases from methanogens
are encoded by the fru, frc, or frh genes. Sequence
comparison indicates that fruD and frcD gene products
from Methanococcus voltae are similar to HycI protease
of Escherichia coli and are putatively involved in the
C-terminal processing of large subunits (FruA and FrcA
respectively). FrhD (F420 reducing hydrogenase delta
subunit) enzyme belongs to the gene cluster of
8-hydroxy-5-deazaflavin (F420) reducing hydrogenase
(FRH) from the thermophilic methanogen Methanobacterium
thermoautotrophicum delta H. FrhD subunit is putatively
involved in the processing of the coenzyme F420
hydrogenase-processing. It is similar to those frhD
genes found in Methanomicrobia and Methanobacteria. It
is different from the FrhD conserved domain found in
methyl viologen-reducing hydrogenase and
F420-non-reducing hydrogenase iron-sulfur subunit D.
Length = 150
Score = 26.0 bits (58), Expect = 8.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 19/56 (33%)
Query: 9 QLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGC 64
+LP +YY AHS P+AD PL+ ELKD + +E V +GC
Sbjct: 81 ELPPGKYYDFDAHSWPLAD---------------PLH-ELKD---KYGIEIVVIGC 117
>gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS)
enzymes.
Length = 224
Score = 26.2 bits (58), Expect = 9.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102
D GCGYG L+ L+ P + G I + ++ +R+ AL
Sbjct: 5 DFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL 46
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 26.3 bits (59), Expect = 9.0
Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 3/16 (18%)
Query: 55 KKVEFVDVGCGYGGLL 70
K+V +DVGCG GG+L
Sbjct: 50 KRV--LDVGCG-GGIL 62
>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase.
Length = 340
Score = 26.2 bits (58), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 50 DPTCEKKVEFVDVGCGYGG 68
D K++ VDVGCG GG
Sbjct: 115 DEKRPKRI--VDVGCGIGG 131
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 26.1 bits (58), Expect = 9.8
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 20/85 (23%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID--RVAAL--RSQNKGQYENIAC 115
+++G G G L L L++ KV ID VA L R QN +
Sbjct: 41 LEIGPGTGNLTEKL-----------LQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEV 89
Query: 116 IRTNAMKYLPNYFRKAQVRRCFANC 140
I +A+K YF C AN
Sbjct: 90 IEGDALKTEFPYFDV-----CVANV 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.417
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,645,241
Number of extensions: 766530
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 44
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)