RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13087
(170 letters)
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 158 bits (401), Expect = 2e-49
Identities = 75/136 (55%), Positives = 97/136 (71%), Gaps = 5/136 (3%)
Query: 10 LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCE---KKVEFVDVGCGY 66
LP+KRYYRQRAHSNP +DH +EYP SP DMDWS LYP K+ KKV D+GCG+
Sbjct: 1 LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGF 60
Query: 67 GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ--YENIACIRTNAMKYL 124
GGL++ LSP FP LILG+EIRV+V++YV DR+ ALR+ + ++NI +R NAMK+L
Sbjct: 61 GGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFL 120
Query: 125 PNYFRKAQVRRCFANC 140
PN+F K Q+ + F
Sbjct: 121 PNFFEKGQLSKMFFCF 136
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 134 bits (338), Expect = 7e-40
Identities = 70/128 (54%), Positives = 87/128 (67%), Gaps = 16/128 (12%)
Query: 26 ADHSVEYPPSPNDMDWSPLYPELKDPTCE----------------KKVEFVDVGCGYGGL 69
DH++ YP P +MDWS LYPE P + +VEF D+GCGYGGL
Sbjct: 1 GDHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGL 60
Query: 70 LVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR 129
LV LSP+FP TLILGLEIRVKVSDYV DR+ ALR+ G ++NIAC+R+NAMK+LPN+F
Sbjct: 61 LVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY 120
Query: 130 KAQVRRCF 137
K Q+ + F
Sbjct: 121 KGQLTKMF 128
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 46.1 bits (110), Expect = 8e-07
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 17/124 (13%)
Query: 18 QRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMF 77
+ A N VE+ +D+ L+ E V +++G G G LV ++
Sbjct: 6 EHALENYWPVMGVEFSEDM--LDFPALFGR------EAPV-TLEIGFGMGASLVAMAKDR 56
Query: 78 PSTLILGLEIRVKVSDYVIDRVA-ALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC 136
P LG+E+ V L S ++ N+ + +A++ L +R
Sbjct: 57 PEQDFLGIEVHSP-------GVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMV 109
Query: 137 FANC 140
Sbjct: 110 QLFF 113
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 45.6 bits (107), Expect = 1e-06
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
+D+G G G + L+ +T +G++ + + + ++ +KG N+ +
Sbjct: 29 IDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKK--IIKKPSKGGLSNVVFVIAA 86
Query: 120 AMKYLPNYF 128
A LP
Sbjct: 87 AES-LPFEL 94
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 42.8 bits (100), Expect = 1e-05
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
+DVG G G ++ PS L++ L+ + + + A KG N+ +
Sbjct: 31 VLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAK--AAAKPAKGGLPNLLYLWA 88
Query: 119 NAMKYLPNYFRKAQV 133
A + LP ++
Sbjct: 89 TAER-LPPLSGVGEL 102
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 38.8 bits (91), Expect = 3e-04
Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 10 LPQKRYYRQRAHSNPIADHSVEYPPSPNDM--DWSPLYPELKDPTCEKKVEFVDVGCGYG 67
+ K ++ +A+++ +P D W+ ++ +P ++VG G G
Sbjct: 3 MRHKPWWDDF-----LAENADIAISNPADYKGKWNTVFGN-DNPIH------IEVGTGKG 50
Query: 68 GLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY 127
+ ++ P +G+E+ V V A++ + +N+ + +A L +
Sbjct: 51 QFISGMAKQNPDINYIGIELFKSVI------VTAVQKVKDSEAQNVKLLNIDA-DTLTDV 103
Query: 128 FRKAQVRR 135
F +V+R
Sbjct: 104 FEPGEVKR 111
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 38.4 bits (90), Expect = 4e-04
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
V+VG G G + ++ P +G++I+ V AL + NI + +
Sbjct: 46 VEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL------SYALDKVLEVGVPNIKLLWVD 99
Query: 120 AMKYLPNYFRKAQVRR 135
L +YF ++ R
Sbjct: 100 G-SDLTDYFEDGEIDR 114
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 37.6 bits (87), Expect = 8e-04
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120
+ GCG G V L+ P I ++I S +++ A ++ G +N+ ++ N
Sbjct: 43 EAGCGIGAQTVILAKNNPDAEITSIDI----SPESLEK-ARENTEKNG-IKNVKFLQANI 96
Query: 121 MKYLP---NYF 128
LP + F
Sbjct: 97 FS-LPFEDSSF 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.005
Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 55/190 (28%)
Query: 2 ETEERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMD-------WSPLYPE----LKD 50
+ E L++ QK Y+ + +DHS + + S Y L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 51 PTCEKKV-EFVDVGCGYGGLLVT---------LSPMFPSTLIL-----GLE--------- 86
K ++ C +L+T LS + + L L
Sbjct: 253 -VQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 87 --IRVKVSD----------YVIDRVAALRSQNKG---QYENIACIR-TNAMKYLPNYFRK 130
+ + D + +A ++++ C + T ++ N
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 131 AQVRRCFANC 140
A+ R+ F
Sbjct: 369 AEYRKMFDRL 378
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 34.0 bits (78), Expect = 0.013
Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 18/101 (17%)
Query: 37 NDMDWSPLYPELKDPTCEK------KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK 90
+ ++P+YP + + + +D+G G G L + L+ ++ L+
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGTC--IDIGSGPGALSIALAKQSDFSIR-ALDF--- 74
Query: 91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP---NYF 128
S ++ + +A + + I ++ + +P NY
Sbjct: 75 -SKHMNE-IALKNIADANLNDRIQIVQGDVHN-IPIEDNYA 112
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 33.4 bits (76), Expect = 0.018
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 30/122 (24%)
Query: 43 PLYP-------ELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEI-------- 87
L + ++V +D+GCG G LL L I G+++
Sbjct: 12 SLNQQRMNGVVAALKQSNARRV--IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIA 69
Query: 88 -----RVKVSDYVIDRV------AALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC 136
R+++ +R+ + + Y+ I +++L A R
Sbjct: 70 QERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI--EVIEHLDLSRLGAFERVL 127
Query: 137 FA 138
F
Sbjct: 128 FE 129
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 32.9 bits (75), Expect = 0.028
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120
D+GCG GG + L+ I G+++ I+ + + + I +
Sbjct: 52 DIGCGTGGQTLFLADYVKGQ-ITGIDL----FPDFIEI-FNENAVKANCADRVKGITGSM 105
Query: 121 MKYLP 125
LP
Sbjct: 106 DN-LP 109
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 32.8 bits (75), Expect = 0.031
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 30/98 (30%)
Query: 60 VDVGCGYGGLL-------------VTLSPMFPSTL-----ILGLEIRVKV--SDYVIDRV 99
+D+G G G +L + +S +F + LG+ RV +D
Sbjct: 41 LDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA----- 95
Query: 100 AALRSQNKGQYENIACI-RTNAMKYLPNYFRKAQVRRC 136
A + + + AC+ T + +
Sbjct: 96 AGYVAN--EKCDVAACVGATWIAGGFAGAEEL--LAQS 129
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 31.9 bits (72), Expect = 0.070
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 43 PLYP-------ELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEI 87
L + KKV +D+GCG G LL L I G+++
Sbjct: 12 NLNQQRLGTVVAVLKSVNAKKV--IDLGCGEGNLLSLLLKDKSFEQITGVDV 61
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 31.8 bits (72), Expect = 0.083
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120
D+GCG GG + L+ + GL+ ID ++ G + I +
Sbjct: 52 DIGCGTGGQTMVLAGHVTGQ-VTGLDF----LSGFIDI-FNRNARQSGLQNRVTGIVGSM 105
Query: 121 MKYLP 125
LP
Sbjct: 106 DD-LP 109
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 32.1 bits (72), Expect = 0.094
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 55 KKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENI 113
+ VD GCG G LL +L S I+G++I K + ++ ++
Sbjct: 723 STL--VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 114 ACIRTNAMKYLP 125
+ +++
Sbjct: 781 TLYDGSILEFDS 792
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 31.1 bits (69), Expect = 0.16
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEI 87
D+GC G L ++++ + + ++GL+I
Sbjct: 52 DLGCNVGHLTLSIACKWGPSRMVGLDI 78
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 30.6 bits (69), Expect = 0.21
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
+D+G GYGG L F + I L I + R + G +NI +
Sbjct: 87 LDLGAGYGGAARFLVRKFGVS-IDCLNI----APVQNKR-NEEYNNQAGLADNITVKYGS 140
Query: 120 AMK 122
++
Sbjct: 141 FLE 143
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 30.2 bits (67), Expect = 0.28
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK 107
FVD+G G G +++ ++ G+E + Y R K
Sbjct: 177 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK 225
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 30.2 bits (68), Expect = 0.30
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGL 85
D+GCG G L+ + +I G+
Sbjct: 38 YDLGCGPGNSTELLTDRYGVNVITGI 63
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 29.5 bits (66), Expect = 0.43
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 61 DVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
D GCGYG L + L P+ P G++ + ++ A + + + +
Sbjct: 28 DYGCGYGYLGLVLMPLLPEGSKYTGIDS----GETLLAE-ARELFRLLP--YDSEFLEGD 80
Query: 120 AMKYLP 125
A + +
Sbjct: 81 ATE-IE 85
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 29.6 bits (66), Expect = 0.46
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEI 87
+D CG G LS FP ++GL++
Sbjct: 61 IDFACGNGTQTKFLSQFFPR--VIGLDV 86
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 29.2 bits (65), Expect = 0.56
Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 32 YPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSP-MFPSTLILGLEIRVK 90
YP Y + + ++ VDVGCG G + ++ + P I+G ++
Sbjct: 21 YPSD--------FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDL--- 69
Query: 91 VSDYVIDRVAALRSQNKGQYENIACIRTNA 120
S +I ++ + Y+N++ +++
Sbjct: 70 -SATMIKTAEVIKEGSPDTYKNVSFKISSS 98
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 29.4 bits (66), Expect = 0.58
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
+DVGCG G V L+ + G+ I S +++ A R+ G + +
Sbjct: 66 LDVGCGIGKPAVRLATARDVR-VTGISI----SRPQVNQ-ANARATAAGLANRVTFSYAD 119
Query: 120 AMK 122
AM
Sbjct: 120 AMD 122
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 29.1 bits (65), Expect = 0.65
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEI 87
VD+GCG G + +TL P ++ ++
Sbjct: 227 VDLGCGNGVIGLTLLDKNPQAKVVFVDE 254
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 29.1 bits (65), Expect = 0.70
Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENI--ACIR 117
D+G G G + ++ + E +++++ + + + A +
Sbjct: 41 ADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVT 100
Query: 118 TNAMKYLPNYFRKAQVRRCFAN 139
A + N
Sbjct: 101 LRAKARVEAGLPDEHFHHVIMN 122
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 28.6 bits (63), Expect = 0.73
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 43 PLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102
Y + + +D GCG+ L + + +I ++ + L
Sbjct: 38 DFYTYVFG-NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL 96
Query: 103 RSQNKGQYENIAC 115
++ K ++ N
Sbjct: 97 KTTIKYRFLNKES 109
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 28.9 bits (65), Expect = 0.74
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 59 FVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIR 117
+DVG G G L LS M + +++ + +++ A + G +N+ ++
Sbjct: 41 VLDVGTGAGFYLPYLSKMVGEKGKVYAIDV----QEEMVN-YAWEKVNKLG-LKNVEVLK 94
Query: 118 TNAMKYLPNYFRKAQVRRCFANCILN 143
+ K +P V F +
Sbjct: 95 SEENK-IP--LPDNTVDFIFMAFTFH 117
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 28.7 bits (64), Expect = 0.76
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 11/106 (10%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
+DVG + L + L + E+ + A + G E I N
Sbjct: 20 LDVGSDHAYLPIELVERGQIKSAIAGEV-----VEGPYQSAVKNVEAHGLKEKIQVRLAN 74
Query: 120 AMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFR 165
+ + + + I IA I + L N R
Sbjct: 75 GLAAFEETDQVSVI------TIAGMGGRLIARILEEGLGKLANVER 114
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 28.6 bits (64), Expect = 0.86
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 42 SPLYPELKDPTCEKKVEFV------DVGCGYGGLLVTLSPMFPSTLILGLEI 87
P + + + D+G G G L L +P +++
Sbjct: 25 IPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDM 76
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
DVG G GG L+T+ P
Sbjct: 188 VADVGGGRGGFLLTVLREHPG 208
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative
acetylacetone dioxygenase, structural genomics; HET:
MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP:
b.82.1.21
Length = 145
Score = 28.1 bits (62), Expect = 1.1
Identities = 6/40 (15%), Positives = 10/40 (25%)
Query: 36 PNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSP 75
+ +DW P K+ V G +
Sbjct: 14 MDQVDWKPFPAAFSTGGIRWKLLHVSPEMGSWTAIFDCPA 53
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 12/71 (16%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120
D G G +++ + G+EI SD + + A S+ + + +
Sbjct: 29 DCGAGGDLPPLSIF-VEDGYKTYGIEI----SDLQLKK-AENFSRENNF--KLNISKGDI 80
Query: 121 MKYLP---NYF 128
K LP
Sbjct: 81 RK-LPFKDESM 90
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 28.0 bits (62), Expect = 1.4
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 46 PELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR 103
E P + + +D+G GYG L + L+ M V + + V +L+
Sbjct: 224 QERLGPEGVRGRQVLDLGAGYGALTLPLARMGA---------EVVGVEDDLASVLSLQ 272
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 27.8 bits (62), Expect = 1.5
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98
D+G G GG + ++ + + G++I +++
Sbjct: 61 DIGSGLGGGCMYINEKYGAH-THGIDI----CSNIVNM 93
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 28.0 bits (63), Expect = 1.7
Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 40/102 (39%)
Query: 61 DVGCGYGGLL-------------VTLSP---MFPSTLI--LGLE--IRVKVSDYVIDRVA 100
D+GCG+G + +TLS ++ + +V + +
Sbjct: 96 DIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---E-- 150
Query: 101 ALRSQNKGQYENIACIRTNAM------KYLPNYFRKAQVRRC 136
+ I I + ++F++
Sbjct: 151 ----DFAEPVDRIVSI---EAFEHFGHENYDDFFKR--CFNI 183
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 27.7 bits (61), Expect = 1.7
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 34 PSPNDMDWSPLYPELK---DPTCEKKVEFVDVGCGYGGLLVTL 73
DW + + +P + + +GCG L L
Sbjct: 18 ADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYEL 60
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 28.0 bits (62), Expect = 1.7
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 38 DMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEI 87
+ +L++ +K +D+GCG G + P GL++
Sbjct: 68 QPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV 117
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 27.8 bits (61), Expect = 1.9
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 41 WSPLYPELKDPTC--------EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVS 92
W+P +L ++ + + +G G ++ + ++ +E ++
Sbjct: 52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIM 111
Query: 93 DYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACI 152
++D A + ENI I +A K +V + + +Q E +
Sbjct: 112 RELLDACA--------ERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIK- 162
Query: 153 RTNAMKYLPN 162
NA +L
Sbjct: 163 --NAKWFLKK 170
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 27.7 bits (62), Expect = 2.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
VD+G G G L+ + FP
Sbjct: 206 AVDIGGGRGSLMAAVLDAFPG 226
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 27.4 bits (61), Expect = 2.1
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
VDVG G G + FP
Sbjct: 192 IVDVGGGTGTTAKIICETFPK 212
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 27.5 bits (62), Expect = 2.1
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 40/102 (39%)
Query: 61 DVGCGYGGLL-------------VTLSP---MFPSTLI--LGLE--IRVKVSDYVIDRVA 100
DVGCG+G + +TLS L+ RV ++ +
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---E-- 124
Query: 101 ALRSQNKGQYENIACIRTNAM------KYLPNYFRKAQVRRC 136
Q + I I + +F R
Sbjct: 125 ----QFDEPVDRIVSI---GAFEHFGHERYDAFFSL--AHRL 157
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 27.7 bits (62), Expect = 2.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
+DVG G GG ++ P
Sbjct: 187 VLDVGGGKGGFAAAIARRAPH 207
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 27.5 bits (61), Expect = 2.3
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEI 87
++G G L F I +E
Sbjct: 48 ELGSFKGDFTSRLQEHFND--ITCVEA 72
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 27.6 bits (62), Expect = 2.3
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 33/102 (32%)
Query: 61 DVGCGYGGLL-------------VTLSP---MFPSTLI--LGLE--IRVKVSDY-----V 95
D+GCG+G + +TLS + + V++ +
Sbjct: 78 DIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 137
Query: 96 IDRVAALRSQNKGQYENIACIRTNA-MKYLPNYFRKAQVRRC 136
+DR+ +L G +E+ A +A + +F+K
Sbjct: 138 VDRIVSL-----GAFEHFADGAGDAGFERYDTFFKK--FYNL 172
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 27.4 bits (61), Expect = 2.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
+DVG G GG+L ++ P
Sbjct: 186 VLDVGGGNGGMLAAIALRAPH 206
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 27.2 bits (61), Expect = 2.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
VDVG G GGLL L
Sbjct: 173 VVDVGGGSGGLLSALLTAHED 193
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 27.1 bits (60), Expect = 3.0
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 13/29 (44%)
Query: 60 VDVGCGYGGLL-------------VTLSP 75
VD GCG GG + VTLS
Sbjct: 122 VDAGCGRGGSMVMAHRRFGSRVEGVTLSA 150
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel
beta-sheets, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A*
1j4l_A* 1k2m_A* 1k2n_A*
Length = 158
Score = 26.7 bits (58), Expect = 3.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 67 GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR 98
G +TL P+ S + LEI+ V+ + I R
Sbjct: 2 NGRFLTLKPLPDSIIQESLEIQQGVNPFFIGR 33
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 27.1 bits (59), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK 107
F+D+G G G +V + L G EI SD I + L+ + K
Sbjct: 246 FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK 294
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 27.1 bits (60), Expect = 3.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
VDVG G GG+ + +FP
Sbjct: 197 LVDVGGGTGGVTKLIHEIFPH 217
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 27.0 bits (60), Expect = 3.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEI 87
+ +DVGCG G L V + P + ++
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDV 228
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 26.8 bits (59), Expect = 3.5
Identities = 17/107 (15%), Positives = 26/107 (24%), Gaps = 11/107 (10%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
+DVG + L + L M + E+ + A G I
Sbjct: 25 LLDVGSDHAYLPIFLLQMGYCDFAIAGEV-----VNGPYQSALKNVSEHGLTSKIDVRLA 79
Query: 119 NAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFR 165
N + I IA I N + L +
Sbjct: 80 NGLSAFEEA------DNIDTITICGMGGRLIADILNNDIDKLQHVKT 120
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 26.9 bits (59), Expect = 3.6
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSD 93
+ D GCG L ++ + L+ RV V D
Sbjct: 65 RPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCD 105
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 26.8 bits (59), Expect = 3.7
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 8/74 (10%)
Query: 3 TEERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDV 62
T L Q YYR RA D L+ V +++
Sbjct: 2 TTSHGLIESQLSYYRARA------SEYDATFVPYMDSAAPAALERLRAGNIRGDV--LEL 53
Query: 63 GCGYGGLLVTLSPM 76
G G LS +
Sbjct: 54 ASGTGYWTRHLSGL 67
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 26.8 bits (60), Expect = 3.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
FVDVG G G L + PS
Sbjct: 171 FVDVGGGSGELTKAILQAEPS 191
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii,
structural genomics, BSGC structure funded by NIH;
1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 26.5 bits (59), Expect = 4.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 60 VDVGCGYGGLLVTLSPMFPS 79
+D+GCGYG + + L+ S
Sbjct: 57 LDLGCGYGVIGIALADEVKS 76
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 26.7 bits (59), Expect = 4.2
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 13 KRYYRQRAHS--NPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLL 70
+ Q A + + + ++E D + ++V +D+GCG G LL
Sbjct: 14 LDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQP----ERV--LDLGCGEGWLL 67
Query: 71 VTL 73
L
Sbjct: 68 RAL 70
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 26.6 bits (59), Expect = 4.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
+D+ G+G L + P
Sbjct: 183 VIDLAGGHGTYLAQVLRRHPQ 203
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 26.3 bits (58), Expect = 4.8
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 16/73 (21%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID--RVAALRSQNKGQYENIACIRT 118
D+G G G + SP D + VA+ +Q KG EN+ +
Sbjct: 27 DIGAGAGHTALAFSPYVQ---------ECIGVDATKEMVEVASSFAQEKG-VENVRFQQG 76
Query: 119 NAMKYLP---NYF 128
A LP + F
Sbjct: 77 TAES-LPFPDDSF 88
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 26.6 bits (59), Expect = 5.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 59 FVDVGCGYGGLLVTLSPMFPS 79
+DVG G G + + FP
Sbjct: 194 MIDVGGGIGDISAAMLKHFPE 214
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 26.5 bits (57), Expect = 5.2
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 1/105 (0%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120
D+GCG GG L+ + L+ +I R ++++ +Y A T
Sbjct: 40 DLGCGKGGDLLKWKKGRINKLV-CTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98
Query: 121 MKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFR 165
+ + CF C A L N
Sbjct: 99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACE 143
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 26.0 bits (57), Expect = 5.4
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 60 VDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
VD CG G L+ + + + G +I+ K + + + + I+
Sbjct: 27 VDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIA-----NTTKKLTDLNLIDRVTLIKD 81
Query: 119 NAMKYLP 125
Sbjct: 82 GHQNMDK 88
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 26.3 bits (57), Expect = 5.5
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 43 PLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL 102
Y EL + D+ CG L + T+ + +I ++ +V + + L
Sbjct: 121 EFYRELFR-HLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL 179
Query: 103 RSQNKGQYENIAC 115
++ ++
Sbjct: 180 NVPHRTNVADLLE 192
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 25.8 bits (57), Expect = 8.4
Identities = 5/38 (13%), Positives = 18/38 (47%)
Query: 42 SPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPS 79
+ L +L + + ++ +D+ +G + ++ P+
Sbjct: 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPN 189
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 25.5 bits (56), Expect = 9.9
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 42 SPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA 101
+ + P L ++ E +D+GC G L + + G+E AA
Sbjct: 19 NAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTR--VSGIE---------AFPEAA 67
Query: 102 LRSQNKGQYENIACIRTNAMKYLPNYF 128
+++ K + + I T M Y F
Sbjct: 68 EQAKEKLDHVVLGDIETMDMPYEEEQF 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.417
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,639,750
Number of extensions: 147698
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 73
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)