RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13087
(170 letters)
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 36.4 bits (83), Expect = 8e-04
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
V+VG G G + ++ P +G++I+ V Y AL + NI + +
Sbjct: 36 VEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY------ALDKVLEVGVPNIKLLWVD 89
Query: 120 AMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFR 165
L +YF ++ R + N + R +L + R
Sbjct: 90 GSD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKR 134
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 36.4 bits (83), Expect = 0.001
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK---GQYENIAC 115
FVD+G G G +++ ++ G+E + Y R K ++
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214
Query: 116 IRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIAC 151
R + + R A F N +
Sbjct: 215 ERGDFLS-EEWRERIANTSVIFVNNFAFGPEVDHQL 249
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Bacillus subtilis [TaxId: 1423]}
Length = 204
Score = 34.9 bits (79), Expect = 0.002
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY 110
++VG G G + ++ P +G+E+ V + +V +QN
Sbjct: 34 IEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLL 84
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 30.4 bits (68), Expect = 0.10
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK 107
F+D+G G G +V + L G EI SD I + L+ + K
Sbjct: 220 FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK 268
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 29.0 bits (64), Expect = 0.26
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 33 PPSPNDMD---WSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV 89
P P ++ W +D +D+G G + L L E+
Sbjct: 36 PTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDD 95
Query: 90 KVSDYVIDRVAALRSQN 106
+Y V +
Sbjct: 96 MCFNYAKKNVEQNNLSD 112
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 27.5 bits (60), Expect = 0.69
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 37 NDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFP 78
ND S L + T + VD GCGYG L + L P+ P
Sbjct: 11 NDDYVSFLVNTVWKITKPVHI--VDYGCGYGYLGLVLMPLLP 50
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus
subtilis [TaxId: 1423]}
Length = 234
Score = 27.2 bits (59), Expect = 0.99
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 47 ELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEI 87
+ + E +V +D+G G G + SP +G++
Sbjct: 10 KTAECRAEHRV--LDIGAGAGHTALAFSPYVQE--CIGVDA 46
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia
coli [TaxId: 562]}
Length = 245
Score = 27.2 bits (59), Expect = 1.1
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 41 WSPLYPELKDPTCEK-------KVEFVDVGCGYGGLLVTLSPMFPST 80
+P E ++ +D+G G G +L T + T
Sbjct: 14 HNPFTEEKYATLGRVLRMKPGTRI--LDLGSGSGEMLCTWARDHGIT 58
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.9 bits (58), Expect = 1.1
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 47 ELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEI 87
++ ++V +DV G G + +P ++ ++
Sbjct: 9 QIAALKGNEEV--LDVATGGGHVANAFAPFVKK--VVAFDL 45
>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA
carboxylase subunit alpha Mpe_A3659 {Rubrivivax
gelatinosus [TaxId: 28068]}
Length = 144
Score = 26.5 bits (58), Expect = 1.2
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 36 PNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPM--FPSTLILGLE 86
+ +DW P K+ V G + F + + +G
Sbjct: 13 MDQVDWKPFPAAFSTGGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPG 65
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 27.0 bits (59), Expect = 1.2
Identities = 5/46 (10%), Positives = 17/46 (36%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQN 106
+G G ++ + ++ +E ++ ++D A +
Sbjct: 80 YLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENII 125
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.3 bits (55), Expect = 2.2
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 110 YENIACIRTNAMKYLPNYFRKAQ 132
E + MK L NY +K Q
Sbjct: 65 EETLKQQNVRGMKKLDNYKKKDQ 87
Score = 25.3 bits (55), Expect = 2.2
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 146 YENIACIRTNAMKYLPNYFRKAQ 168
E + MK L NY +K Q
Sbjct: 65 EETLKQQNVRGMKKLDNYKKKDQ 87
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa
(Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 25.8 bits (56), Expect = 2.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 59 FVDVGCGYGGLLVTLSPMFP 78
VDVG G G L + +P
Sbjct: 85 LVDVGGGSGRNLELIISKYP 104
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase
{Alfalfa (Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 25.5 bits (55), Expect = 3.4
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 50 DPTCEKKVEFVDVGCGYGGLLVTLSPMFPS 79
D + VDVG G G + FP
Sbjct: 75 DFVFDGLESIVDVGGGTGTTAKIICETFPK 104
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 25.1 bits (54), Expect = 4.5
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 59 FVDVGCGYGGLLVTLSP-MFPSTLILGLEIRVKVSDYVIDRVAALRSQNK 107
++ G G GG+ + LS + ++ E+R D R K
Sbjct: 102 VLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 25.1 bits (54), Expect = 5.0
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99
+ +G G + L+ + +I +E K + +++ V
Sbjct: 61 LYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738
{Erwinia carotovora [TaxId: 554]}
Length = 225
Score = 24.9 bits (53), Expect = 5.9
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLILGLEI 87
++G G L F I +E
Sbjct: 26 ELGSFKGDFTSRLQEHFND--ITCVEA 50
>d2zjru1 d.325.1.1 (U:8-79) Ribosomal protein L28 (L28p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 72
Score = 23.5 bits (51), Expect = 6.1
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 84 GLEIRVKVSDYVIDRVAALRSQNKGQYENI 113
G V +S ALR+ +KG Y+ I
Sbjct: 48 GQVKTVWLS------ANALRTLSKGPYKGI 71
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 24.6 bits (52), Expect = 6.9
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 41 WSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFP 78
WS E +++D+ CG G L L P F
Sbjct: 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK 60
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 24.5 bits (52), Expect = 7.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 61 DVGCGYGGLLVTLSPMFPSTLI 82
D+GCG GG L+
Sbjct: 30 DLGCGKGGDLLKYERAGIGEYY 51
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 24.5 bits (52), Expect = 8.2
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 48 LKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLE 86
L++ +K +D+GCG G + P GL+
Sbjct: 77 LRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD 115
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 206
Score = 24.2 bits (52), Expect = 8.4
Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 7/132 (5%)
Query: 38 DMDWSPLYPE--LKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTL-----ILGLEIRVK 90
D+ W +PE K T + V + L + L F L +
Sbjct: 52 DVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTF 111
Query: 91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIA 150
V + + + LR + N + A + + R A+ +L S +
Sbjct: 112 VGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLD 171
Query: 151 CIRTNAMKYLPN 162
I K P
Sbjct: 172 SIEAKWEKAGPE 183
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 24.0 bits (51), Expect = 9.0
Identities = 10/88 (11%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
+D G GG + P I+G+++ +V +++ + ++ +
Sbjct: 27 ILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-----KEFSDRVSLFKVSY 81
Query: 119 NAMKYLPNYFRKAQVRRCFANCILNSQY 146
+L +V + +++
Sbjct: 82 READFLLKTLGIEKVDGILMDLGVSTYQ 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.417
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,555
Number of extensions: 29707
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 31
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)