BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13090
(771 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 43/210 (20%)
Query: 505 PYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNH 563
PY+C C + S+ HL+ H+ GEK Y C +C K L H
Sbjct: 21 PYACPECGKSFSRSDHLAEHQR------------THTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 564 MPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAF 623
H+ ++ ++CP C + FS++++ HQR H KP
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKP---------------------- 105
Query: 624 EMQSESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLS 683
C C + F + H H ++ C CG L HQR H
Sbjct: 106 -------YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
Query: 684 SNLFRCEKCNLGYSRKDSFEYHMTSHNQKE 713
++C +C +SR+D+ H +H K+
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 36/206 (17%)
Query: 566 LHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEM 625
L ++ + CP C + FSR SD+ +R H KP
Sbjct: 15 LEPGEKPYACPECGKSFSR-SDHLAEHQRTHTGEKP------------------------ 49
Query: 626 QSESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSN 685
C C + F K H H ++ C CG L+ HQR H
Sbjct: 50 -----YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 686 LFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFS 745
+ C +C +S+ H +H E+ + C +C + S +D L+TH H E +
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHT-GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK 163
Query: 746 CQNCDFKCSKLSCVRNVISQVAQKTH 771
C C S+ R+ ++ V Q+TH
Sbjct: 164 CPECGKSFSR----RDALN-VHQRTH 184
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 81/228 (35%), Gaps = 46/228 (20%)
Query: 457 FRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNS 516
F +S+V + A G+KPY+C C + F S+ L H + H PY C C + S
Sbjct: 4 FGSSSSVAQ--AALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFS 60
Query: 517 KYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQC 575
L+RH+ GEK Y C +C + L H H+ ++ + C
Sbjct: 61 DKKDLTRHQR------------THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 576 PVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQSESQLTCDI 635
P C + FS+ + HQ R H KP C
Sbjct: 109 PECGKSFSQLAHLRAHQ-RTHTGEKP-----------------------------YKCPE 138
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLS 683
C + F + H H ++ C CG L +HQR H
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 63/166 (37%), Gaps = 19/166 (11%)
Query: 373 LVRETRSMKMYDNYKCNICDCFFKTHSILEDHMK---ALHSFPCDKCDYVGGNLSMLTSH 429
L R+ YKC C F L H + + C +C + L +H
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Query: 430 QNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENS 489
Q +H + C C + F + + + H HTG+KPY C C + F
Sbjct: 97 QRTHTGEKPY---------ACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSRE 146
Query: 490 ESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQIDG 535
++L TH + H PY C C + S+ R L VHQ+ G
Sbjct: 147 DNLHTHQRT-HTGEKPYKCPECGKSFSR-----RDALNVHQRTHTG 186
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 22 VAMPRIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
VA + P + + C C S S ++ H THTG KPY C C + + L H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 82 HVDMLQYLY-----GASFDRFPHL 100
+ Y G SF + +L
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANL 93
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
R H + + C C S N++ H THTG KPY C C + L+ H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 86 LQYLY-----GASFDR 96
+ Y G SF R
Sbjct: 130 GEKPYKCPECGKSFSR 145
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 23/58 (39%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHV 83
R H + + C C S N+ H THTG KPY C C + AL H
Sbjct: 126 RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F R++ + +HI + HTG KP+ C +C F S+ L TH+ + H P++C+I
Sbjct: 10 ESCDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDI 67
Query: 511 CFRRNSKYTHLSRHKLLVHQKQID 534
C R+ ++ RH +H +Q D
Sbjct: 68 CGRKFARSDERKRH-TKIHLRQKD 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + S ++ HI THTG KP+ C C K A S K H + +
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Query: 86 LQ 87
Q
Sbjct: 87 RQ 88
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R +L H R H F+C C +SR D H+ +H E+ F C
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GEKPFACD 66
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C + D H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F + H+ H ++ C++C L H R H F C+ C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 696 YSRKDSFEYHMTSH 709
++R D + H H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 32/116 (27%)
Query: 569 LDRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQ 626
++R + CPV C RRFSR ++ H R +H KP
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIR-IHTGQKP------------------------- 34
Query: 627 SESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
C IC R F H+ H ++ C +CG + + K H + HL
Sbjct: 35 ----FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 505 PYSCNI--CFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEKYSCTQCSYQTYHKHALDN 562
PY+C + C RR S+ L+RH + +H Q + + C C L
Sbjct: 4 PYACPVESCDRRFSRSAELTRH-IRIHTGQ----------KPFQCRICMRNFSRSDHLTT 52
Query: 563 HMPLHSLDRKHQCPVCLRRFSRQSDNNTH 591
H+ H+ ++ C +C R+F+R + H
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +SR H+ H ++ F C C S D L TH H E F+C C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 750 DFKCSK 755
K ++
Sbjct: 69 GRKFAR 74
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S + HI HTG KP+ C C + S L H+
Sbjct: 19 SAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F R++ + +HI + HTG KP+ C +C F S+ L TH+ + H P++C+I
Sbjct: 10 ESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDI 67
Query: 511 CFRRNSKYTHLSRHKLLVHQKQID 534
C R+ ++ RH +H +Q D
Sbjct: 68 CGRKFARSDERKRH-TKIHLRQKD 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + S ++ HI THTG KP+ C C K A S K H + +
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Query: 86 LQ 87
Q
Sbjct: 87 RQ 88
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R L H R H F+C C +SR D H+ +H E+ F C
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GEKPFACD 66
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C + D H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F H+ H ++ C++C L H R H F C+ C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 696 YSRKDSFEYHMTSH 709
++R D + H H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 32/116 (27%)
Query: 569 LDRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQ 626
++R + CPV C RRFSR +D H R +H KP
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIR-IHTGQKP------------------------- 34
Query: 627 SESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
C IC R F H+ H ++ C +CG + + K H + HL
Sbjct: 35 ----FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 42/120 (35%)
Query: 474 DKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQK 531
++PY+C + C+ +F S L H+ +H P+ C IC R S+ HL+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLT--------- 51
Query: 532 QIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTH 591
H+ H+ ++ C +C R+F+R + H
Sbjct: 52 ------------------------------THIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +SR H+ H ++ F C C S D L TH H E F+C C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 750 DFKCSK 755
K ++
Sbjct: 69 GRKFAR 74
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S ++ HI HTG KP+ C C + S L H+
Sbjct: 19 SADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F R+ + +HI + HTG KP+ C +C F S+ L TH+ + H P++C+I
Sbjct: 10 ESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDI 67
Query: 511 CFRRNSKYTHLSRHKLLVHQKQID 534
C R+ ++ RH +H +Q D
Sbjct: 68 CGRKFARSDERKRH-TKIHLRQKD 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + S ++ HI THTG KP+ C C K A S K H + +
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Query: 86 LQ 87
Q
Sbjct: 87 RQ 88
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R +L H R H F+C C +SR D H+ +H E+ F C
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GEKPFACD 66
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C + D H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F + H+ H ++ C++C L H R H F C+ C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 696 YSRKDSFEYHMTSH 709
++R D + H H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +SR D H+ H ++ F C C S D L TH H E F+C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 750 DFKCSK 755
K ++
Sbjct: 69 GRKFAR 74
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 42/116 (36%), Gaps = 32/116 (27%)
Query: 569 LDRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQ 626
++R + CPV C RRFSR SD T R+H KP
Sbjct: 1 MERPYACPVESCDRRFSR-SDELTRHIRIHTGQKP------------------------- 34
Query: 627 SESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
C IC R F H+ H ++ C +CG + + K H + HL
Sbjct: 35 ----FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 42/120 (35%)
Query: 474 DKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQK 531
++PY+C + C+ +F S+ L H+ +H P+ C IC R S+ HL+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLT--------- 51
Query: 532 QIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTH 591
H+ H+ ++ C +C R+F+R + H
Sbjct: 52 ------------------------------THIRTHTGEKPFACDICGRKFARSDERKRH 81
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F ++ ++ +HI + HTG KP+ C +C F S+ L TH+ + H P++C+I
Sbjct: 10 ESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDI 67
Query: 511 CFRRNSKYTHLSRHKLLVHQKQID 534
C R+ ++ RH +H +Q D
Sbjct: 68 CGRKFARSDERKRH-TKIHLRQKD 90
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + S ++ HI THTG KP+ C C K A S K H + +
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Query: 86 LQ 87
Q
Sbjct: 87 RQ 88
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R L H R H F+C C +SR D H+ +H E+ F C
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GEKPFACD 66
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C + D H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F H+ H ++ C++C L H R H F C+ C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 696 YSRKDSFEYHMTSH 709
++R D + H H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 42/120 (35%)
Query: 474 DKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQK 531
++PY+C + C+ +F S SL H+ +H P+ C IC R S+ HL+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLT--------- 51
Query: 532 QIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTH 591
H+ H+ ++ C +C R+F+R + H
Sbjct: 52 ------------------------------THIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 32/116 (27%)
Query: 569 LDRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQ 626
++R + CPV C RRFS QS + T R+H KP
Sbjct: 1 MERPYACPVESCDRRFS-QSGSLTRHIRIHTGQKP------------------------- 34
Query: 627 SESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
C IC R F H+ H ++ C +CG + + K H + HL
Sbjct: 35 ----FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +S+ S H+ H ++ F C C S D L TH H E F+C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 750 DFKCSK 755
K ++
Sbjct: 69 GRKFAR 74
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 32/111 (28%)
Query: 545 YSCT--QCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPT 602
Y+C C + +L H+ +H+ + QC +C+R FSR SD+ T R H KP
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR-SDHLTTHIRTHTGEKP- 62
Query: 603 PLEMQVEKRDQVALRMKPSAFEMQSESQLTCDICDRVFQTDKQWKLHMGFH 653
CDIC R F + K H H
Sbjct: 63 ----------------------------FACDICGRKFARSDERKRHTKIH 85
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 683 SSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADEL 742
SS +CE C +SRKD + HM H + + C CD+ ++ +LN H +H+DE
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTG-VKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 743 KFSCQNCDF 751
F CQ C +
Sbjct: 64 PFKCQICPY 72
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 444 SKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALL 503
S +CE C + F R ++ H+ HTG KPY C C+ +S SL H+ +H+
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDE 62
Query: 504 FPYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIG 542
P+ C IC Y + +L VH + G G
Sbjct: 63 RPFKCQIC-----PYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 633 CDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKC 692
C++C + F + K HM H + CK C + + L H R H F+C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 693 NLGYSRKDSFEYHMTSHN 710
H+ SH
Sbjct: 71 PYASRNSSQLTVHLRSHT 88
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 661 CKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQ 720
C++CG +LK H R H ++C+ C+ + S H+ H+ E+ F C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD-ERPFKCQI 69
Query: 721 CDFTSSSKDTLNTHAMVHADE 741
C + S + L H H +
Sbjct: 70 CPYASRNSSQLTVHLRSHTGD 90
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 29 PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHV 83
PHK C C +K H+ HTG KPY C C + A S +L H+ +
Sbjct: 8 PHK----CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 386 YKCNICDCFFKTHSILEDHMK---ALHSFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPI 442
+KC +C F L+ HM+ + + C CDY + S L H H+ +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF--- 65
Query: 443 LSKNKRQCEYCSQLFRRASAVEKHIALKHTGD 474
+C+ C R +S + H+ HTGD
Sbjct: 66 ------KCQICPYASRNSSQLTVHL-RSHTGD 90
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 369 QKEELVRETRSMKMYDNYKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLS 424
+K++L R YKC CD S L H++ +HS F C C Y N S
Sbjct: 20 RKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSS 78
Query: 425 MLTSHQNSHNSQT 437
LT H SH +
Sbjct: 79 QLTVHLRSHTGDS 91
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
R H + C C Y+ S+++ H+ H+ +P+ C C + +S L H+
Sbjct: 29 RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 505 PYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHM 564
P+ C +C + S+ + KL H + GV + Y C C Y +L+ H+
Sbjct: 8 PHKCEVCGKCFSR-----KDKLKTHMRCHTGV------KPYKCKTCDYAAADSSSLNKHL 56
Query: 565 PLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPT 602
+HS +R +C +C S H R G P+
Sbjct: 57 RIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPS 94
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F +S + +HI + HTG KP+ C +C F S+ L TH+ + H P++C+I
Sbjct: 10 ESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDI 67
Query: 511 CFRRNSKYTHLSRHKLLVHQKQID 534
C R+ ++ RH +H +Q D
Sbjct: 68 CGRKFARSDERKRH-TKIHLRQKD 90
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 405 MKALHSFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVE 464
M+ ++ P + CD + S LT H H Q QC C + F R+ +
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPF---------QCRICMRNFSRSDHLT 51
Query: 465 KHIALKHTGDKPYSCYLCEEKFENSESLRTH 495
HI HTG+KP++C +C KF S+ + H
Sbjct: 52 THIRT-HTGEKPFACDICGRKFARSDERKRH 81
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + S ++ HI THTG KP+ C C K A S K H + +
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Query: 86 LQ 87
Q
Sbjct: 87 RQ 88
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R + L H R H F+C C +SR D H+ +H E+ F C
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GEKPFACD 66
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C + D H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F H+ H ++ C++C L H R H F C+ C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 696 YSRKDSFEYHMTSH 709
++R D + H H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 42/120 (35%)
Query: 474 DKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQK 531
++PY+C + C+ +F +S +L H+ +H P+ C IC R S+ HL+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLT--------- 51
Query: 532 QIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTH 591
H+ H+ ++ C +C R+F+R + H
Sbjct: 52 ------------------------------THIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 32/116 (27%)
Query: 569 LDRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQ 626
++R + CPV C RRFS S N T R+H KP
Sbjct: 1 MERPYACPVESCDRRFS-DSSNLTRHIRIHTGQKP------------------------- 34
Query: 627 SESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
C IC R F H+ H ++ C +CG + + K H + HL
Sbjct: 35 ----FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S+N+ HI HTG KP+ C C + S L H+
Sbjct: 19 SSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +S + H+ H ++ F C C S D L TH H E F+C C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 750 DFKCSK 755
K ++
Sbjct: 69 GRKFAR 74
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F R+ + +HI + HTG KP+ C +C F S+ L TH+ + H P++C+I
Sbjct: 9 ESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDI 66
Query: 511 CFRRNSKYTHLSRH 524
C R+ ++ RH
Sbjct: 67 CGRKFARSDERKRH 80
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + S ++ HI THTG KP+ C C K A S K H + +
Sbjct: 26 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 85
Query: 86 LQ 87
Q
Sbjct: 86 RQ 87
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R +L H R H F+C C +SR D H+ +H E+ F C
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GEKPFACD 65
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C + D H +H
Sbjct: 66 ICGRKFARSDERKRHTKIH 84
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F + H+ H ++ C++C L H R H F C+ C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 696 YSRKDSFEYHMTSH 709
++R D + H H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +SR D H+ H ++ F C C S D L TH H E F+C C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 67
Query: 750 DFKCSK 755
K ++
Sbjct: 68 GRKFAR 73
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 32/115 (27%)
Query: 570 DRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQS 627
+R + CPV C RRFSR SD T R+H KP
Sbjct: 1 ERPYACPVESCDRRFSR-SDELTRHIRIHTGQKP-------------------------- 33
Query: 628 ESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
C IC R F H+ H ++ C +CG + + K H + HL
Sbjct: 34 ---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 85
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 42/120 (35%)
Query: 474 DKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQK 531
++PY+C + C+ +F S+ L H+ +H P+ C IC R S+ HL+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLT--------- 50
Query: 532 QIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTH 591
H+ H+ ++ C +C R+F+R + H
Sbjct: 51 ------------------------------THIRTHTGEKPFACDICGRKFARSDERKRH 80
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLF-PYSC 508
CE C ++FR + +H L H+G+KPYSC +C +F+ + + H+ S + PY C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 509 NICFRRNSKYTHLSRHKLLVHQKQIDG 535
C + S+ HL+ H VH G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 626 QSESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSS- 684
S + C+IC ++F+ H H+ ++ C +CG R K ++ H R H S
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 685 -NLFRCEKCNLGYSRKDSFEYHM 706
+ C+ C G+SR D H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 659 LPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQK-EQTFM 717
+ C++CG ++ L H+ H + C C L + RKD YH+ SH+ + ++
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 718 CTQCDFTSSSKDTLNTH 734
C C S D LN H
Sbjct: 68 CQSCGKGFSRPDHLNGH 84
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 507 SCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMP 565
+C IC + HL+RHKL GEK YSC C + K + H+
Sbjct: 9 ACEICGKIFRDVYHLNRHKL------------SHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Query: 566 LH--SLDRKHQCPVCLRRFSRQSDNNTHQRRVH 596
H S+ + + C C + FSR N H ++VH
Sbjct: 57 SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSC 508
+C C + F ++S ++KH HTG+KPY C C + F S L+ H + H PY C
Sbjct: 6 KCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKPYKC 63
Query: 509 NICFRRNSKYTHLSRHK 525
C + S+ HLSRH+
Sbjct: 64 PECGKSFSRSDHLSRHQ 80
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDMLQYLY--- 90
+ C C S S+N++ H THTG KPY C C + S L+ H + Y
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 91 --GASFDRFPHLS 101
G SF R HLS
Sbjct: 65 ECGKSFSRSDHLS 77
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 33/86 (38%)
Query: 628 ESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLF 687
E C C + F + H H ++ C CG L+ HQR H +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 688 RCEKCNLGYSRKDSFEYHMTSHNQKE 713
+C +C +SR D H +H K+
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 411 FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALK 470
+ C +C S L HQ +H + +C C + F ++S ++KH
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPY---------KCPECGKSFSQSSDLQKHQRT- 54
Query: 471 HTGDKPYSCYLCEEKFENSESL----RTHMN 497
HTG+KPY C C + F S+ L RTH N
Sbjct: 55 HTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 505 PYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNH 563
PY C C + S+ ++L +H+ GEK Y C +C L H
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQR------------THTGEKPYKCPECGKSFSQSSDLQKH 51
Query: 564 MPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
H+ ++ ++CP C + FSR + HQR
Sbjct: 52 QRTHTGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHV 83
R H + + C C S S++++ H THTG KPY C C + S L H
Sbjct: 25 RTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 545 YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKP 601
Y C +C L H H+ ++ ++CP C + FS+ SD HQ R H KP
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ-RTHTGEKP 60
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSC 746
++C +C +S+ + + H +H E+ + C +C + S L H H E + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHT-GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 747 QNCD 750
C
Sbjct: 64 PECG 67
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 474 DKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQI 533
+KPY C C + F S +L+ H + H PY C C + S+ + L +H+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQR------- 53
Query: 534 DGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLH 567
GEK Y C +C L H H
Sbjct: 54 -----THTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F R+ + +HI + HTG KP+ C +C F S+ L TH+ + H P++C+I
Sbjct: 10 ESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDI 67
Query: 511 CFRRNSKYTHLSRH 524
C R+ ++ RH
Sbjct: 68 CGRKFARSDERKRH 81
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + S ++ HI THTG KP+ C C K A S K H + +
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R +L H R H F+C C +SR D H+ +H E+ F C
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACD 66
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C + D H +H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F + H+ H ++ C++C L H R H F C+ C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 696 YSRKDSFEYHMTSH 709
++R D + H H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +SR D H+ H ++ F C C S D L TH H E F+C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 750 DFKCSK 755
K ++
Sbjct: 69 GRKFAR 74
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 32/115 (27%)
Query: 570 DRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQS 627
+R + CPV C RRFSR SD T R+H KP
Sbjct: 2 ERPYACPVESCDRRFSR-SDELTRHIRIHTGQKP-------------------------- 34
Query: 628 ESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
C IC R F H+ H ++ C +CG + + K H + HL
Sbjct: 35 ---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 42/120 (35%)
Query: 474 DKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQK 531
++PY+C + C+ +F S+ L H+ +H P+ C IC R S+ HL+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLT--------- 51
Query: 532 QIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTH 591
H+ H+ ++ C +C R+F+R + H
Sbjct: 52 ------------------------------THIRTHTGEKPFACDICGRKFARSDERKRH 81
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F + + ++ HI + HTG KP+ C +C F SL H+ + H P++C+I
Sbjct: 10 ESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPFACDI 67
Query: 511 CFRRNSKYTHLSRHKLLVHQKQID 534
C R+ + +RH +H +Q D
Sbjct: 68 CGRKFATLHTRTRH-TKIHLRQKD 90
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + ++ HI THTG KP+ C C K A+ H + +
Sbjct: 27 RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHL 86
Query: 86 LQ 87
Q
Sbjct: 87 RQ 88
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 32/111 (28%)
Query: 545 YSCT--QCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPT 602
Y+C C + K LD H+ +H+ + QC +C+R FS+Q+ N H R G
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG----- 59
Query: 603 PLEMQVEKRDQVALRMKPSAFEMQSESQLTCDICDRVFQTDKQWKLHMGFH 653
E CDIC R F T H H
Sbjct: 60 -------------------------EKPFACDICGRKFATLHTRTRHTKIH 85
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R L H R H F+C C +S++ S H+ +H E+ F C
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT-GEKPFACD 66
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C ++ T H +H
Sbjct: 67 ICGRKFATLHTRTRHTKIH 85
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +S+K + + H+ H ++ F C C S + +LN H H E F+C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHT-GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Query: 750 DFKCSKL 756
K + L
Sbjct: 69 GRKFATL 75
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 32/116 (27%)
Query: 569 LDRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQ 626
++R + CPV C RRFS++++ +TH R +H KP
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKP------------------------- 34
Query: 627 SESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
C IC R F H+ H ++ C +CG + H + HL
Sbjct: 35 ----FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHL 86
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F H+ H ++ C++C L H R H F C+ C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 696 YS 697
++
Sbjct: 72 FA 73
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 47 TNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
TN+ HI HTG KP+ C C + +L H+
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI 54
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 505 PYSCNI--CFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEKYSCTQCSYQTYHKHALDN 562
PY+C + C RR S+ T+L H + +H Q + + C C + +L+
Sbjct: 4 PYACPVESCDRRFSQKTNLDTH-IRIHTGQ----------KPFQCRICMRNFSQQASLNA 52
Query: 563 HMPLHSLDRKHQCPVCLRRFS 583
H+ H+ ++ C +C R+F+
Sbjct: 53 HIRTHTGEKPFACDICGRKFA 73
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 453 CSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICF 512
C + F S ++H+++ H G +PY C +C +KF+ L HM +H + PY CNIC
Sbjct: 15 CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICA 72
Query: 513 RR 514
+R
Sbjct: 73 KR 74
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
C + F Q HM H R C +CG + K L H + H + C C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 696 YSRKDSFEYHMTS 708
+ +DSF H+TS
Sbjct: 75 FMWRDSFHRHVTS 87
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 525 KLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRF 582
K H+ Q D S+ +G + Y C C + KH L HM +H+ + ++C +C +RF
Sbjct: 17 KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNS 498
C C + F+ + H+ + HTG KPY C +C ++F +S H+ S
Sbjct: 40 CGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 538 SVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHG 597
S G+K QC HK D HM +H R + C VC ++F + H ++H
Sbjct: 3 SGSSGDKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHT 61
Query: 598 VLKP 601
+KP
Sbjct: 62 GIKP 65
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 674 LKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH--NQKEQTFMCTQCDFTSSSKDTL 731
LK+H R H F C KC Y RK++ H + N+ EQ F C+ C T + L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 732 NTHAMVHADELKFSCQNCD 750
H + H E+ + C +C
Sbjct: 83 RLHMVSHTGEMPYKCSSCS 101
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHA 501
C C + FRR + H+ + HTG+ PY C C ++F + L++HM LH+
Sbjct: 69 CSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 627 SESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCG---FRLKNHKQLKLHQRYHLS 683
S + C C + F + K+H H ++ C CG FR +N + + + S
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 684 SNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAM 736
+F C C + R+ HM SH E + C+ C K L +H +
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHT-GEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
F C C + ++ H+++HTG PY CS C+ + + L+ HM
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 472 TGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQK 531
+G C C +KF + L+ H N H P+ C C + + + LL H+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGK-----CYFRKENLLEHEA 56
Query: 532 QIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTH 591
+ S ++ ++C+ C + L HM H+ + ++C C ++F ++ D +H
Sbjct: 57 RNCMNRSEQV---FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Query: 592 QRRVH 596
++H
Sbjct: 114 MIKLH 118
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 574 QCPVCLRRFSRQSDNNTHQRRVHGVLKP--TPLEMQVEKRDQVALRMKPSAFEMQSESQL 631
+CP C ++F + H R+ H KP P + R + L + +SE
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 632 TCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLH 677
TC +C F+ + +LHM H + C C + K L+ H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 434 NSQTEVPPILSKNKRQCEY--CSQLFRRASAVEKHIALKHTGDKPYSCYL--CEEKFENS 489
+S + P + + C+Y C++++ ++S ++ H+ HTG+KPY C C+ +F S
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARS 60
Query: 490 ESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRH 524
+ L H H P+ C +C R S+ HL+ H
Sbjct: 61 DELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKL--CGFRLKNHKQLKLHQRYHLSSNLFRCEKCN 693
C +V+ K H+ H ++ C C +R +L H R H + F+C CN
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 694 LGYSRKDSFEYHMTSH 709
+SR D HM H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 416 CDYVG-GNLSMLTSHQNSH-NSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHTG 473
CDY G + +SH +H + T P K E C F R+ + +H KHTG
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPY----KCTWEGCDWRFARSDELTRHYR-KHTG 72
Query: 474 DKPYSCYLCEEKFENSESLRTHM 496
KP+ C +C F S+ L HM
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHM 95
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 46 STNMKNHIMTHTGSKPYNCS--HCTFKGASSQALK--YHMHVDMLQYLYGA---SFDRFP 98
S+++K H+ THTG KPY C+ C ++ A S L Y H + G SF R
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89
Query: 99 HLS 101
HL+
Sbjct: 90 HLA 92
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 416 CDYVGGN-----LSMLTSHQNSHNSQTEVPPILSKNKRQCEY--CSQLFRRASAVEKHIA 468
C Y G N LS L H H + QC++ C + F R+ +++H
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPY---------QCDFKDCERRFSRSDQLKRH-Q 58
Query: 469 LKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI--CFRRNSKYTHLSRH 524
+HTG KP+ C C+ KF S+ L+TH + H P+SC C ++ ++ L RH
Sbjct: 59 RRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 674 LKLHQRYHLSSNLFRCE--KCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTL 731
L++H R H ++C+ C +SR D + H H + F C C S D L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG-VKPFQCKTCQRKFSRSDHL 82
Query: 732 NTHAMVHADELKFSCQ 747
TH H E FSC+
Sbjct: 83 KTHTRTHTGEKPFSCR 98
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 416 CDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDK 475
C+ L HQ H T V P QC+ C + F R+ ++ H HTG+K
Sbjct: 44 CERRFSRSDQLKRHQRRH---TGVKPF------QCKTCQRKFSRSDHLKTHTRT-HTGEK 93
Query: 476 PYSCYL--CEEKFENSESLRTHMN 497
P+SC C++KF S+ L H N
Sbjct: 94 PFSCRWPSCQKKFARSDELVRHHN 117
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 662 KLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMC--T 719
K C R QLK HQR H F+C+ C +SR D + H +H E+ F C
Sbjct: 42 KDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT-GEKPFSCRWP 100
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C + D L H +H
Sbjct: 101 SCQKKFARSDELVRHHNMH 119
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNC--SHCTFKGASSQALKYH 80
R H F C C S ++K H THTG KP++C C K A S L H
Sbjct: 59 RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYH 80
S +K H HTG KP+ C C K + S LK H
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI 510
E C + F + + ++ HI + HTG KP+ C +C F L H+ + H P++C+I
Sbjct: 10 ESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFACDI 67
Query: 511 CFRRNSKYTHLSRHKLLVHQKQID 534
C R+ + RH +H +Q D
Sbjct: 68 CGRKFATLHTRDRH-TKIHLRQKD 90
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDM 85
RIH + F C C + T + HI THTG KP+ C C K A+ H + +
Sbjct: 27 RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHL 86
Query: 86 LQ 87
Q
Sbjct: 87 RQ 88
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 36/112 (32%)
Query: 545 YSCT--QCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPT 602
Y+C C + K LD H+ +H+ + QC +C+R FS+ + N H R G
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG----- 59
Query: 603 PLEMQVEKRDQVALRMKPSAFEMQSESQLTCDICDRVFQT----DKQWKLHM 650
E CDIC R F T D+ K+H+
Sbjct: 60 -------------------------EKPFACDICGRKFATLHTRDRHTKIHL 86
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 28/74 (37%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLG 695
CDR F H+ H ++ C++C H L H R H F C+ C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 696 YSRKDSFEYHMTSH 709
++ + + H H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P + C R L H R H F+C C +S+ H+ +H E+ F C
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT-GEKPFACD 66
Query: 720 QCDFTSSSKDTLNTHAMVH 738
C ++ T + H +H
Sbjct: 67 ICGRKFATLHTRDRHTKIH 85
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 690 EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
E C+ +S+K + + H+ H ++ F C C S LN H H E F+C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHT-GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Query: 750 DFKCSKL 756
K + L
Sbjct: 69 GRKFATL 75
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 42/112 (37%)
Query: 474 DKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQK 531
++PY+C + C+ +F +L TH+ +H P+ C IC R S++T
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHT------------ 48
Query: 532 QIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFS 583
L+ H+ H+ ++ C +C R+F+
Sbjct: 49 ---------------------------GLNQHIRTHTGEKPFACDICGRKFA 73
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 47 TNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
TN+ HI HTG KP+ C C + L H+
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI 54
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 410 SFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIAL 469
SF C C S L++H H+ P C+YC + F + S ++KH +
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYP---------CQYCGKRFHQKSDMKKHTFI 51
Query: 470 KHTGDKPYSCYLCEEKFENSESLRTH 495
HTG+KP+ C +C + F S +L TH
Sbjct: 52 -HTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 633 CDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKC 692
C IC + F+ H+ H+ R PC+ CG R +K H H +C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 693 NLGYSRKDSFEYHMTSHN 710
+S+ + H H
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 506 YSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMP 565
+ C IC + + + LS H LL+H Y C C + + K + H
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDT----------RPYPCQYCGKRFHQKSDMKKHTF 50
Query: 566 LHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHG 597
+H+ ++ H+C VC + FS+ S+ TH R+ G
Sbjct: 51 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHVDMLQYLY 90
F C C S S+ + H++ H+ ++PY C +C ++H DM ++ +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYC--------GKRFHQKSDMKKHTF 50
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 654 NTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKE 713
TK+ CK CG L +H+R H + C+ C+ + R+D H H+ KE
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS-KE 71
Query: 714 QTFMCTQCDFTSSSKDTLNTHAMVH 738
+ F C +C TL H +H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 626 QSESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLC--GFRLKNHKQLKLHQRYHLS 683
+++ + C C R F +H H +R C +C FR ++H L+ H+ H
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH--LRDHRYIHSK 70
Query: 684 SNLFRCEKCNLGYSRKDSFEYHMTSHNQ 711
F+C++C G+ + + H T H Q
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 441 PILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLH 500
P +K + C++C + F ++ + H HT ++PY+C +C + F + LR H +H
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDH-RYIH 68
Query: 501 ALLFPYSCNICFRRNSKYTHLSRHKLL 527
+ P+ C C + + L+ HK L
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 628 ESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSN 685
E TCDIC + F+ + H H+ ++ C+ CG + L +H+ H+ ++
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 395 FKTHSILEDHMKALHSFPCDKCDYVG-----GNLSMLTSHQNSHNSQTEVPPILSKNKRQ 449
FK +L HM+ KC + G L L +H SH + P + ++
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK---PYMCEH--- 102
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYL--CEEKFENSESLRTHMNSLHA 501
E CS+ F AS KH H+ +KPY C L C +++ + SLR H+ ++H
Sbjct: 103 -EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCY--LCEEKFENSESLRTHMNSLHALLFPYSC 508
E C + + R ++ H+ HTG+KPY C C + F N+ H N H+ PY C
Sbjct: 73 EGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Query: 509 NI--CFRRNSKYTHLSRHKLLVH 529
+ C +R + + L +H VH
Sbjct: 132 KLPGCTKRYTDPSSLRKHVKTVH 154
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 29 PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH--CT--FKGASSQA 76
PHK F C S N+K H+ +HTG KPY C H C+ F AS +A
Sbjct: 67 PHKCTFE--GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 16/154 (10%)
Query: 628 ESQLTCDICDRVFQTDKQWKLHMG---FHNTKRRLPCKLCGFR-----LKNHKQLKLHQR 679
E+ D C + F + +Q H+ H ++ C G K L +H R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 680 YHLSSNLFRC--EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFT---SSSKDTLNTH 734
H +C E C YSR ++ + H+ SH E+ +MC + S++ D
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT-GEKPYMCEHEGCSKAFSNASDRAKHQ 119
Query: 735 AMVHADELKFSCQ--NCDFKCSKLSCVRNVISQV 766
H++E + C+ C + + S +R + V
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
Query: 482 CEEKFENSESLRTHMNS--LHALLFPYSCNI--CFRRNSKYTHLSRHKLLVHQKQIDGVG 537
C ++F++ E L H+NS +H + C+ C R + +++ L+VH ++ G
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFK--AQYMLVVHMRRHTG-- 64
Query: 538 SVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCP--VCLRRFSRQSDNNTHQRRV 595
E K + C L H+ H+ ++ + C C + FS SD HQ R
Sbjct: 65 --EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 596 HGVLKP 601
H KP
Sbjct: 123 HSNEKP 128
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 632 TCDI--CDRVFQTDKQWKLHMGFHNTKRRLPCKL--CGFRLKNHKQLKLHQRYHLSSNLF 687
TCD C + + K H+ H ++ C CG++ +L H R H F
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 688 RCEKCNLGYSRKDSFEYHMTSH 709
+C+KC+ +SR D HM H
Sbjct: 68 QCQKCDRAFSRSDHLALHMKRH 89
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 416 CDYVG-GNLSMLTSHQNSH-NSQTEVPPILSKNKRQCEY--CSQLFRRASAVEKHIALKH 471
CDY G G +SH +H + T P C++ C F R+ + +H KH
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPY------HCDWDGCGWKFARSDELTRHY-RKH 61
Query: 472 TGDKPYSCYLCEEKFENSESLRTHM 496
TG +P+ C C+ F S+ L HM
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLALHM 86
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 450 CEY--CSQLFRRASAVEKHIALKHTGDKPYSCYL--CEEKFENSESLRTHMNSLHALLFP 505
C+Y C + + ++S ++ H+ HTG+KPY C C KF S+ L H H P
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRP 66
Query: 506 YSCNICFRRNSKYTHLSRH 524
+ C C R S+ HL+ H
Sbjct: 67 FQCQKCDRAFSRSDHLALH 85
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 37 YACYYSTYI-STNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYH 80
YA TY S+++K H+ THTG KPY+C C +K A S L H
Sbjct: 11 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 664 CGFRLKNHKQLKLHQRYHLSSNLFRCE--KCNLGYSRKDSFEYHMTSHNQKEQTFMCTQC 721
CG LK H R H + C+ C ++R D H H + F C +C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG-HRPFQCQKC 72
Query: 722 DFTSSSKDTLNTHAMVH 738
D S D L H H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 423 LSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLC 482
L+ L H N H+ + + P C YC ++F A KH + HTG++ Y C C
Sbjct: 35 LTSLRRHFNIHSWEKKYP---------CRYCEKVFPLAEYRTKH-EIHHTGERRYQCLAC 84
Query: 483 EEKFENSESLRTHMNSLHA 501
+ F N + + +H+ S+H+
Sbjct: 85 GKSFINYQFMSSHIKSVHS 103
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 632 TCDI--CDRVFQTDKQWKLHMGFHNTKRRLPCKL--CGFRLKNHKQLKLHQRYHLSSNLF 687
TCD C + + K H+ H ++ C CG++ +L H R H F
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 688 RCEKCNLGYSRKDSFEYHMTSH 709
+C+KC+ +SR D HM H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 416 CDYVG-GNLSMLTSHQNSH-NSQTEVPPILSKNKRQCEY--CSQLFRRASAVEKHIALKH 471
CDY G G +SH +H + T P C++ C F R+ + +H KH
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPY------HCDWDGCGWKFARSDELTRHY-RKH 60
Query: 472 TGDKPYSCYLCEEKFENSESLRTHMN 497
TG +P+ C C+ F S+ L HM
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 450 CEY--CSQLFRRASAVEKHIALKHTGDKPYSCYL--CEEKFENSESLRTHMNSLHALLFP 505
C+Y C + + ++S ++ H+ HTG+KPY C C KF S+ L H H P
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRP 65
Query: 506 YSCNICFRRNSKYTHLSRH 524
+ C C R S+ HL+ H
Sbjct: 66 FQCQKCDRAFSRSDHLALH 84
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 37 YACYYSTYI-STNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYH 80
YA TY S+++K H+ THTG KPY+C C +K A S L H
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 664 CGFRLKNHKQLKLHQRYHLSSNLFRCE--KCNLGYSRKDSFEYHMTSHNQKEQTFMCTQC 721
CG LK H R H + C+ C ++R D H H + F C +C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG-HRPFQCQKC 71
Query: 722 DFTSSSKDTLNTHAMVH 738
D S D L H H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 446 NKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLH 500
+ R+C YC + FR + H+ HTG+KPY C CE SLR H+ H
Sbjct: 3 SSRECSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 52 HIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
H+ THTG KPY C C + A +L+YH+
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHL 52
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 661 CKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQ 711
C CG +++ L +H R H ++CE C ++K S YH+ H++
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYS 507
C C + F +S +++H L HTG+KP+ C C ++F +LRTH+ +H PY
Sbjct: 37 CAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYV 94
Query: 508 C--NICFRRNSKYTHLSRHKLLVHQK 531
C + C ++ ++ T+L H +L H K
Sbjct: 95 CPFDGCNKKFAQSTNLKSH-ILTHAK 119
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 25 PRIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQ-----ALKY 79
PR+H +C C + S+ +K H + HTG KP+ CTF+G + L+
Sbjct: 32 PRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQ---CTFEGCGKRFSLDFNLRT 82
Query: 80 HMHVDMLQYLYGASFD 95
H+ + Y FD
Sbjct: 83 HVRIHTGDRPYVCPFD 98
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 636 CDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRC--EKCN 693
C ++F+ + + H+ H + + C CG +LK HQ H F+C E C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHV-CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 694 LGYSRKDSFEYHMTSHNQKEQTFMCT--QCDFTSSSKDTLNTHAMVHA 739
+S + H+ H ++ ++C C+ + L +H + HA
Sbjct: 72 KRFSLDFNLRTHVRIHTG-DRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 19/115 (16%)
Query: 482 CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEI 541
C + F ++ ++R H+++ + + C C + + + L RH+L V
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQL------------VHT 58
Query: 542 GEK-YSCT--QCSYQTYHKHALDNHMPLHSLDRKHQCPV--CLRRFSRQSDNNTH 591
GEK + CT C + L H+ +H+ DR + CP C ++F++ ++ +H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHAL 502
QC C + F R+ + HI HTG+KP++C +C KF S+ + H + H L
Sbjct: 5 QCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHV 83
F C C + S ++ HI THTG KP+ C C K A S K H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 475 KPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVH 529
KP+ C +C F S+ L TH+ + H P++C+IC R+ ++ RH+ + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNS 498
E C + F R+ + +HI + HTG KP+ C +C F S+ L TH+ +
Sbjct: 25 ESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 475 KPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRH 524
+PY+C + C+ +F S+ L H+ +H P+ C IC R S+ HL+ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH 709
P + C R +L H R H F+C C +SR D H+ +H
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTH 495
+C+ C FR + H + HTG+KPY C +C +F +L+TH
Sbjct: 19 KCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLKTH 64
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 474 DKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLL 527
DKPY C C+ F +L +H ++H PY CNIC + ++ +L H +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 545 YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKP 601
Y C +C +K L +H +H+ ++ ++C +C +F+R ++ TH R+H KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT-RIHSGEKP 73
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMHV 83
+ C C S N+ +H HTG KPY C+ C + LK H +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADE 741
++C++C + K + H T H E+ + C C + L TH +H+ E
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTG-EKPYRCNICGAQFNRPANLKTHTRIHSGE 71
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHA 501
CE C++ F R +++H HT +KPY C LC F + L H +H+
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAM-VHADEL 742
F CE C ++R++ + H SH E+ + C C+ + +D L HA +H+ L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 477 YSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQID 534
+ C +C F E L+ H S H PY C +C R ++ L RH +H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 631 LTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNL 686
C++C R F + K H H ++ PC LC L H + S NL
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 33 KFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
K++C C + +K HI THT +PY+C++C F + L HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNS 498
CE C ++ S ++KHI HT +PY C C F+ +L HM S
Sbjct: 4 CEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 661 CKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTS 708
C+ CG R K LK H R H + C CN + K + HM S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 26 RIHPHKDKFMCY--ACYYSTYISTNMKNHIMTHTGSKPYNC--SHCTFKGASSQALKYHM 81
R+H + F C C S N+K H THTG KP+ C C + A+S K HM
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 82 HV 83
HV
Sbjct: 143 HV 144
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 453 CSQLFRRASAVEKHIALKHTGDKPYSCYL--CEEKFENSESLRTHM 496
C ++F R+ ++ H HTG+KP+ C C+ +F NS + HM
Sbjct: 98 CGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 649 HMGFHNTKRRLPCKL--CGFRLKNHKQLKLHQRYHLSSNLFRC--EKCNLGYSRKDSFEY 704
H+ H ++ PC CG + LK+H+R H F+C E C+ ++ +
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 705 HMTSH 709
HM H
Sbjct: 141 HMHVH 145
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTH 495
C C + F R+S + +H + HTG+KPY C C + F + L H
Sbjct: 17 CVECGKAFSRSSILVQHQRV-HTGEKPYKCLECGKAFSQNSGLINH 61
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 545 YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
Y C +C L H +H+ ++ ++C C + FS+ S HQR
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 474 DKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLL 527
+KPY C C + F S L H +H PY C C + S+ + L H+ +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRI 64
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHM 496
H+G+KPY CY+C +F S +++ H+
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHI 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQ 530
HTG+KPY+C C++ F + L H H F + +C + +T R+ + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR--RNTMARHA 67
Query: 531 KQIDGVGSVE 540
G VE
Sbjct: 68 DNCAGPDGVE 77
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 659 LPCKLCGFRLKNHKQLKLHQRYH---LSSNLFRCEKCNLGYSRKDSFEYH 705
L C++CGF + L HQR H +++ F CE C + + DS H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 31 KDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
+ ++ C C S S+++ H THTG KPY C C
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 445 KNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLF 504
+ + +C+ C + F +S + KH HTG+KPY C C + F L H + +H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGH-HRVHTGSG 73
Query: 505 PYS 507
P S
Sbjct: 74 PSS 76
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 627 SESQLTCDI--CDRVFQTDKQWKLHMG-FHNTKRRL-PCKL--CGFRLKNHKQLKLHQRY 680
E TCD CD F T K H FHN K + C CG K H QLK+HQ
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128
Query: 681 HLSSNLFRC--EKCNLGYSRKDSFEYHMTSH 709
H + C E C+ +S + H H
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 369 QKEELVRETRSMKMY-----DNYKCNICDCFFKTHSILEDHMKALH 409
+ +V + +SMK+ +Y CN+C+ F T S L +H+++ H
Sbjct: 95 KPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 369 QKEELVRETRSMKMY-----DNYKCNICDCFFKTHSILEDHMKALH 409
+ +V + +SMK+ +Y CN+C+ F T S L +H+++ H
Sbjct: 77 KPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 122
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 38 ACYYSTYISTNMKNHIMTHTGSKPYNCS 65
C + + S+++K H THTG KP++CS
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 453 CSQLFRRASAVEKHIALKHTGDKPYSCYL--CEEKFENSESLRTH 495
C + + ++S ++ H HTG+KP+SC CE +F S+ L H
Sbjct: 25 CGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRH 68
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLH 500
C C + F A E+H+ L H + C C F +S L H+N H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCH 80
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHM 496
C +C + +R AS + +H H G +P SC C + F + + H+
Sbjct: 7 CNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHL 52
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYS 478
CE C ++FR + +H L H+G+KPYS
Sbjct: 15 CEICGKIFRDVYHLNRH-KLSHSGEKPYS 42
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 475 KPYSCYLCEEKFENSESLRTHMNSLHA 501
K Y C CE++F +S +L+TH+ + H+
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHS 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,942,129
Number of Sequences: 62578
Number of extensions: 933036
Number of successful extensions: 4040
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3256
Number of HSP's gapped (non-prelim): 634
length of query: 771
length of database: 14,973,337
effective HSP length: 106
effective length of query: 665
effective length of database: 8,340,069
effective search space: 5546145885
effective search space used: 5546145885
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)