RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13090
(771 letters)
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 62.5 bits (153), Expect = 6e-12
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHKLL 527
+G C C +KF + L+ H H P+ C C + R LL
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKE--------NLL 52
Query: 528 VHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQS 586
H+ + + E+ ++C+ C + L HM H+ + ++C C ++F ++
Sbjct: 53 EHEAR----NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108
Query: 587 DNNTHQRRVH 596
D +H ++H
Sbjct: 109 DLQSHMIKLH 118
Score = 47.5 bits (114), Expect = 1e-06
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPP 441
+C C F + L+ H + H+ F C KC L H+ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 442 ILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLH 500
C C + FRR + H+ HTG+ PY C C ++F + L++HM LH
Sbjct: 67 F------TCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 39.8 bits (94), Expect = 4e-04
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 661 CKLCG--FRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHN--QKEQTF 716
C C F K + LK+H R H F C KC Y RK++ H + + EQ F
Sbjct: 10 CPTCHKKFLSKYY--LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 717 MCTQCDFTSSSKDTLNTHAMVHADELKFSCQNCD 750
C+ C T + L H + H E+ + C +C
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCS 101
Score = 34.4 bits (80), Expect = 0.032
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 632 TCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCG--FRLKNHKQLKLHQRY---HLSSNL 686
C C + F + K+H H ++ C CG + K + L H+ + S +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKEN--LLEHEARNCMNRSEQV 66
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTH 734
F C C + R+ HM SH E + C+ C K L +H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTG-EMPYKCSSCSQQFMQKKDLQSH 113
Score = 31.7 bits (73), Expect = 0.28
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC--TFKGASSQALKYHM 81
+K H HTG KP+ C C + + L H
Sbjct: 20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKEN--LLEHE 55
Score = 30.9 bits (71), Expect = 0.49
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC--TFKGASSQALKYHM 81
++ H+++HTG PY CS C F L+ HM
Sbjct: 79 RMELRLHMVSHTGEMPYKCSSCSQQFMQKKD--LQSHM 114
Score = 29.4 bits (67), Expect = 1.8
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 15/96 (15%)
Query: 386 YKCNICDCFFKTHSILEDHMKAL--HS----FPCDKCDYVGGNLSMLTSHQNSHNSQTEV 439
++C C + L +H + F C C L H SH E+
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG--EM 93
Query: 440 PPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDK 475
P +C CSQ F + ++ H+ H+G
Sbjct: 94 P-------YKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 28.6 bits (65), Expect = 3.5
Identities = 8/28 (28%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 56 HTGSKPYNCSHC--TFKGASSQALKYHM 81
+GS C C F LK H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYY--LKVHN 27
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 3e-10
Identities = 83/607 (13%), Positives = 167/607 (27%), Gaps = 187/607 (30%)
Query: 109 DDGDDGDVKFDVCNGIINKIENTCSE--HNDRIFYANIKREHLDPDDCPKYKMTRESGIK 166
++ + KF +++ I+ + R++ R + D KY ++R
Sbjct: 84 EEVLRINYKF-----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 167 LNIKYDMNEAEDLKCKLCNYQAVNIKGIRAH---VFRKH-LQNTVTYSCKKCPFETQFK- 221
L+ L + K + K + V C + +
Sbjct: 139 -----------KLRQALLELR--PAKNVLIDGVLGSGKTWVALDV---CLSYKVQCKMDF 182
Query: 222 ----VTLGDHYKT----------CHKGISFTCDECHLCFNTFRRFDS-------HIRAHE 260
+ L + ++ N R S +++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 261 YTEQC-----ELCNEKVIGKNQIYFHYYHEHEGYDFNCKQCSFTTKTPKKFIEHKEAGHF 315
Y E C + N K ++ +CK TT+
Sbjct: 243 Y-ENCLLVLLNVQNAKAW-------------NAFNLSCKIL-LTTR-------------- 273
Query: 316 TWNCEHCDFSASKKSVLLSHLKQHVTRVTRTQHMTPDE-----------ETNEIPIE-PD 363
L + H++ + +TPDE ++P E
Sbjct: 274 ---------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 364 LSPDLQK--EELVRETRSMKMYDNYKCNICDCFFKTHSILEDHMKALHSFPCDKCDYVGG 421
+P E +R+ + +DN+K CD K +I+E + L K +
Sbjct: 325 TNPRRLSIIAESIRDGLA--TWDNWKHVNCD---KLTTIIESSLNVLEPAEYRKM-FD-- 376
Query: 422 NLSMLTSHQNSHNSQTEVPP-ILS-----KNKRQCEYCSQLFRRASAVEKHIALKHTGDK 475
LS+ + +P +LS K + S VEK K
Sbjct: 377 RLSVFPPSAH-------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-------PK 422
Query: 476 PYSCYLCEEKFENSESLRTHMNSLHA-LLFPYSCNICFRRNSK---------YTHLSRHK 525
+ + E L + +LH ++ Y+ F + Y+H+ H
Sbjct: 423 ESTISIPSIYLELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH- 480
Query: 526 LLVHQKQIDGVGSVE--------IGEK--YSCTQCS-----------YQTYHKHALDNHM 564
L + + + + + +K + T + + Y + DN
Sbjct: 481 -LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 565 PLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFE 624
L + F + + N + +L ++AL + A
Sbjct: 540 KYERLVNA------ILDFLPKIEENLICSKYTDLL-------------RIALMAEDEAIF 580
Query: 625 MQSESQL 631
++ Q+
Sbjct: 581 EEAHKQV 587
Score = 44.1 bits (103), Expect = 2e-04
Identities = 67/410 (16%), Positives = 120/410 (29%), Gaps = 105/410 (25%)
Query: 281 HYYHEHEGYDFNCKQCSFTTKTPKKFIEHKEAGHFTWNCEHCDFSASKKSVL----LSHL 336
H++H H ++ Q + K + E F N + D KS+L + H+
Sbjct: 1 HHHHHHMDFETGEHQYQY-----KDILSVFEDA-FVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 337 KQHVTRVTRTQHM-----TPDEETNEIPIEPDLSPDLQ------KEELVRETRSMKMYDN 385
V+ T + + EE + +E L + + K E + + +MY
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 386 YK---CNICDCFFKTHSILEDHMKALHSFPCDKCDYVGGNLSMLTSHQNS--HN-----S 435
+ N F K + L L L +N
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNVLIDGVLGSGK 163
Query: 436 QTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTH 495
+ K QC+ ++F + LK+ C E E + L
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF--------WLNLKN-------CNSPETVLEMLQKLLYQ 208
Query: 496 MNSLHALLFPYSCNICFRRNSKYTHLSR------HK--LLVHQKQIDGVGSVEIGEKYSC 547
++ +S NI R +S L R ++ LLV + V + +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWN---- 260
Query: 548 TQCSYQTYHKHALDNHMPLHSLDRKHQCPVCL-RRFSRQSDNNTHQRRVHGVLKPTPLEM 606
A + C + L RF + +D + H L + +
Sbjct: 261 -----------AFN-----------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 607 -QVEKRDQVA--LRMKPSAF--EMQSESQLTCDICDRVFQ----TDKQWK 647
E + + L +P E+ + + I + T WK
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Score = 39.1 bits (90), Expect = 0.007
Identities = 65/487 (13%), Positives = 146/487 (29%), Gaps = 128/487 (26%)
Query: 304 KKFIEHKEAGHFTW-NCEHCDFSASKKSVLLSHLKQHVTRVTRTQHMTPDEETNEIPIEP 362
K + F W N ++C+ +L L++ + ++ D +N
Sbjct: 174 YKVQCKMDFKIF-WLNLKNCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSN------ 222
Query: 363 DLSPDLQKEELVRETRSMKMYDNYKCNICDCFFKTHSILED--HMKALHSFPCD-KCDYV 419
L+ + E R + Y+ +C +L + + KA ++F + C
Sbjct: 223 ---IKLRIHSIQAELRRLLKSKPYE----NCLL----VLLNVQNAKAWNAF--NLSC--- 266
Query: 420 GGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGD---KP 476
+L + ++ K ++A HI+L H
Sbjct: 267 ----KIL---------------LTTRFK------QVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 477 YSCYLCEEKFENS-ESLRTHMNSLHAL---LFPYSCNICFRRNSKYTHLSRHKLLVHQKQ 532
L + + + L + + + + S + H++ KL
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTI 358
Query: 533 IDGVGSVEIGEKYSCTQCSYQTYHKHAL---DNHMPLHSL-----DRKHQCP-VCLRRFS 583
I+ S+ + E + + + ++ H+P L D V + +
Sbjct: 359 IES--SLNVLEPAEYRKM----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 584 RQS----DNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMK-------PSAFEMQSESQLT 632
+ S + + LE++V+ ++ AL P F+
Sbjct: 413 KYSLVEKQPKESTISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP- 467
Query: 633 CDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFR--------LKN---HKQLKLHQRYH 681
D+ + H+G H P ++ FR L+ H +
Sbjct: 468 --------YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 682 LSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADE 741
+ + L + + Y ++ ++ K + + DF ++ L + D
Sbjct: 520 ILNTLQQLKF----YKP------YICDNDPKYERLVNAILDFLPKIEENLICSK--YTDL 567
Query: 742 LKFSCQN 748
L+ +
Sbjct: 568 LRIALMA 574
Score = 29.8 bits (66), Expect = 4.1
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 25/143 (17%)
Query: 555 YHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQV 614
+H H +D H K V F D Q +L ++ + +D V
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 615 A--------LRMKP-SAFEMQSESQLTCD---ICDRVFQTDKQWKLHMGFHNTKRRLPCK 662
+ L K + E L + + + +Q + + +R +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD---R 118
Query: 663 LCG----F------RLKNHKQLK 675
L F RL+ + +L+
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLR 141
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 57.5 bits (140), Expect = 1e-09
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 449 QCEYCSQLFRRASAVEKH--IALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPY 506
C C + F R+ + +H HTG+KPY C C + F + + L H H PY
Sbjct: 23 ACPECGKSFSRSDHLAEHQRT---HTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPY 78
Query: 507 SCNIC---FRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDN 562
C C F + + L HQ+ GEK Y+C +C L
Sbjct: 79 KCPECGKSFSQRA--------NLRAHQR-------THTGEKPYACPECGKSFSQLAHLRA 123
Query: 563 HMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
H H+ ++ ++CP C + FSR+ + +THQR
Sbjct: 124 HQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 54.8 bits (133), Expect = 1e-08
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
Query: 449 QCEYCSQLFRRASAVEKH--IALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPY 506
+C C + F + +H HTG+KPY C C + F +LR H H PY
Sbjct: 51 KCPECGKSFSDKKDLTRHQRT---HTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPY 106
Query: 507 SCNIC---FRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDN 562
+C C F + + L HQ+ GEK Y C +C + L
Sbjct: 107 ACPECGKSFSQLAH--------LRAHQR-------THTGEKPYKCPECGKSFSREDNLHT 151
Query: 563 HMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
H H+ ++ ++CP C + FSR+ N HQR
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 45.9 bits (110), Expect = 1e-05
Identities = 41/149 (27%), Positives = 58/149 (38%), Gaps = 26/149 (17%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPP 441
YKC C F L H + H+ + C +C + L +HQ +H E P
Sbjct: 50 YKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTG--EKP- 105
Query: 442 ILSKNKRQCEYCSQLFRRASAVEKH--IALKHTGDKPYSCYLCEEKFENSESLRTHMNSL 499
C C + F + + + H HTG+KPY C C + F ++L TH
Sbjct: 106 ------YACPECGKSFSQLAHLRAHQRT---HTGEKPYKCPECGKSFSREDNLHTHQ-RT 155
Query: 500 HALLFPYSCNIC---FRRNSKYTHLSRHK 525
H PY C C F R L+ H+
Sbjct: 156 HTGEKPYKCPECGKSFSRRD---ALNVHQ 181
Score = 33.6 bits (78), Expect = 0.12
Identities = 54/230 (23%), Positives = 83/230 (36%), Gaps = 51/230 (22%)
Query: 512 FRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLD 570
+S + +E GEK Y+C +C L H H+ +
Sbjct: 3 EFGSSS--------SVAQAA-------LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGE 47
Query: 571 RKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQSESQ 630
+ ++CP C + FS + D HQR H KP
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQR-THTGEKP----------------------------- 77
Query: 631 LTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCG--FRLKNHKQLKLHQRYHLSSNLFR 688
C C + F + H H ++ C CG F H L+ HQR H ++
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH--LRAHQRTHTGEKPYK 135
Query: 689 CEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVH 738
C +C +SR+D+ H +H E+ + C +C + S +D LN H H
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTG-EKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 30.9 bits (71), Expect = 0.95
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 661 CKLCG--FRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMC 718
C CG F + + L+ HQR H + C +C +S+ H +H E+ + C
Sbjct: 80 CPECGKSFSQRAN--LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT-GEKPYKC 136
Query: 719 TQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
+C + S +D L+TH H E + C C
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 30.9 bits (71), Expect = 1.1
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
R H P+K C C S ++ H THTG KPY C C
Sbjct: 42 RTHTGEKPYK----CPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Score = 30.5 bits (70), Expect = 1.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
S ++ H THTG KPY C C
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPEC 55
Score = 30.1 bits (69), Expect = 1.9
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
R H P+K C C S N++ H THTG KPY C C
Sbjct: 70 RTHTGEKPYK----CPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Score = 30.1 bits (69), Expect = 2.0
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
R H P+K C C S N+ H THTG KPY C C
Sbjct: 126 RTHTGEKPYK----CPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 29.7 bits (68), Expect = 2.3
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
S++ G KPY C C
Sbjct: 6 SSSSVAQAALEPGEKPYACPEC 27
Score = 28.6 bits (65), Expect = 5.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
R H P+ C C S +++ H THTG KPY C C
Sbjct: 98 RTHTGEKPYA----CPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 56.1 bits (136), Expect = 2e-09
Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 23/155 (14%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS------FPCDKCDYVGGN-----LSMLTSHQNSHN 434
+ + C F + L H+ + H F C ML H H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 435 SQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSC--YLCEEKFENSESL 492
E P +K E C + + R ++ H+ HTG+KPY C C + F N+
Sbjct: 64 G--EKP-----HKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDR 115
Query: 493 RTHMNSLHALLFPYSCNI--CFRRNSKYTHLSRHK 525
H N H+ PY C + C +R + + L +H
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 52.2 bits (126), Expect = 4e-08
Identities = 35/160 (21%), Positives = 49/160 (30%), Gaps = 43/160 (26%)
Query: 449 QCEYCSQLFRRASAVEKHIALK--HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPY 506
+ + CSQ F + HI + H K + C+
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----------------------- 41
Query: 507 SCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCT--QCSYQTYHKHALDNH 563
C+ R L H H GEK + CT C L H
Sbjct: 42 -CSRELRPFKAQYMLVVHMR-RH-----------TGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 564 MPLHSLDRKHQC--PVCLRRFSRQSDNNTHQRRVHGVLKP 601
+ H+ ++ + C C + FS SD HQ R H KP
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Score = 39.5 bits (93), Expect = 9e-04
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 17/97 (17%)
Query: 505 PYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKH----- 558
+ C + L H H + K + C +
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEH---------IHGERKEFVCHWGGCSRELRPFKAQY 53
Query: 559 ALDNHMPLHSLDRKHQCPV--CLRRFSRQSDNNTHQR 593
L HM H+ ++ H+C C + +SR + TH R
Sbjct: 54 MLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
Score = 37.2 bits (87), Expect = 0.006
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 9 SNLNDLMYHCRACVAMPRIHPHKDKFMCYACYYSTYI-----STNMKNHIMTHTGSKPYN 63
+ L++H + IH + +F+C+ S + + H+ HTG KP+
Sbjct: 14 DSQEQLVHHINSE----HIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHK 69
Query: 64 CSH--CTFKGASSQALKYHM 81
C+ C + + LK H+
Sbjct: 70 CTFEGCRKSYSRLENLKTHL 89
Score = 33.3 bits (77), Expect = 0.11
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 46 STNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYHMH 82
N+K H+ +HTG KPY C H C+ +++ H +
Sbjct: 82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Score = 32.6 bits (75), Expect = 0.23
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHN--QKEQTFMCTQCDFTSSSK-----DTLNTHAMVHA 739
R + C+ + ++ +H+ S + + + F+C + + L H H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 740 DELKFSCQNCDFKCSK 755
E C C K
Sbjct: 64 GEKPHKCTFE--GCRK 77
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 50.5 bits (121), Expect = 2e-08
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLHSL---DRKHQCPVCLRRFSRQSDNNTHQRRVHG 597
G C C + K +L+ H H+ + C C +RF + H+ + H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 598 VLKPTPLEM 606
L P E
Sbjct: 64 ALLLAPQES 72
Score = 47.0 bits (112), Expect = 5e-07
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLF---PYSCNICFRRNSKYTHLSRHKLL 527
+G C +C SL H HA + C C +R K ++ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 528 VH 529
H
Sbjct: 61 SH 62
Score = 47.0 bits (112), Expect = 5e-07
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHT---GDKPYSCYLCEEKFENSESLRTHMNSLHALLFP 505
QCE C R+ +++ H KH + C C ++FE +S+ H + H L
Sbjct: 9 QCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 506 YSCNIC 511
Sbjct: 68 APQESS 73
Score = 46.2 bits (110), Expect = 9e-07
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQK--EQTFMCTQCDFTSSSKDTLNTHAMVHADELKF 744
+CE C +K S +H H + F C C D++ H L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 745 SCQNC 749
+ Q
Sbjct: 68 APQES 72
Score = 40.1 bits (94), Expect = 1e-04
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 661 CKLCGFRLKNHKQLKLHQRYHLSSNL---FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFM 717
C++CGF + L HQR H + F CE C + + DS H + +
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 718 CTQC 721
Sbjct: 70 QESS 73
Score = 35.8 bits (83), Expect = 0.004
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHT---GSKPYNCSHCTFKGASSQALKYHM 81
C C ++ ++ H H + + C C + ++ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 32.4 bits (74), Expect = 0.070
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS-------FPCDKCDYVGGNLSMLTSHQNSHNSQTE 438
+C IC + + L H + H+ FPC+ C + +H++ +
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 439 VPP 441
+ P
Sbjct: 67 LAP 69
Score = 32.0 bits (73), Expect = 0.11
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 713 EQTFMCTQCDFTSSSKDTLNTHAMVHAD---ELKFSCQNCDFKCSKLSCVRN 761
C C FT K +LN H HA+ L+F C+ C + K V
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAA 56
Score = 32.0 bits (73), Expect = 0.11
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 631 LTCDICDRVFQTDKQWKLHMGFHNTK---RRLPCKLCGFRLKNHKQLKLHQRYHLSSNLF 687
L C+IC + H H R PC+ CG R + + H+ + L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 688 RCEKC 692
++
Sbjct: 68 APQES 72
Score = 31.6 bits (72), Expect = 0.14
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 27/92 (29%)
Query: 571 RKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQSESQ 630
QC +C +++ N HQR H E + +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQR-KHA--------------------------ETVAALR 38
Query: 631 LTCDICDRVFQTDKQWKLHMGFHNTKRRLPCK 662
C+ C + F+ H + L +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 30.5 bits (69), Expect = 0.30
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 56 HTGSKPYNCSHCTFKGASSQALKYHM 81
+GS C C F +L +H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ 27
Score = 30.1 bits (68), Expect = 0.46
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 291 FNCKQCSFTTKTPKKFIEH-----KEAGHFTWNCEHCDFSASKKSVLLSHLKQH 339
C+ C FT + H + + CE C K + +H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 27.0 bits (60), Expect = 5.4
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 237 FTCDECHLCFNTFRRFDSHIRAHEYTE-----QCELCNEKVIGKNQIYFHYYHEHEGYDF 291
C+ C + H R H T CE C ++ + + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 292 NCKQCS 297
++ S
Sbjct: 68 APQESS 73
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 50.6 bits (122), Expect = 3e-08
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSC 508
QC C + F R+ + HI HTG+KP++C +C KF S+ + H + H L P
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHIL--PILE 61
Query: 509 NICFRRNSKYTHLSRHK 525
+ SK HL
Sbjct: 62 DKVEELLSKNYHLENEV 78
Score = 41.3 bits (98), Expect = 6e-05
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 16/95 (16%)
Query: 505 PYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNH 563
P+ C IC R S+ HL+ H H GEK ++C C + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIR-THT-----------GEKPFACDICGRKFARSDERKRH 50
Query: 564 MPLHSLDRKHQCPVCLRRFSRQSDNNTHQR--RVH 596
+ S+ +
Sbjct: 51 RDIQH-ILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 39.4 bits (93), Expect = 2e-04
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 475 KPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQID 534
KP+ C +C F S+ L TH+ H P++C+IC R+ ++ RH+ +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHR-DIQ----- 54
Query: 535 GVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKH 573
+ + L+N + +K
Sbjct: 55 -------HILPILEDKVEELLSKNYHLENEVARL---KKL 84
Score = 38.6 bits (91), Expect = 5e-04
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPP 441
++C IC F L H++ H+ F CD C H++ +P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ---HILP- 58
Query: 442 ILSKNKRQCEYCSQLFRRASAVEKHIALK--HTGDK 475
+ +L + +E +A G++
Sbjct: 59 ------ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 37.9 bits (89), Expect = 9e-04
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S ++ HI THTG KP+ C C K A S K H
Sbjct: 16 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 37.5 bits (88), Expect = 0.001
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 661 CKLCG--FRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMC 718
C++C F +H L H R H F C+ C ++R D + H + +
Sbjct: 6 CRICMRNFSRSDH--LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL--PILE 61
Query: 719 TQCDFTSSSKDTLNTH 734
+ + S L
Sbjct: 62 DKVEELLSKNYHLENE 77
Score = 32.5 bits (75), Expect = 0.086
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSC 746
F+C C +SR D H+ +H E+ F C C + D H + L
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHT-GEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 747 QNCDFKCSKLSCVRNVISQVAQKTH 771
+ SK + N K
Sbjct: 62 DKVEELLSKNYHLEN--EVARLKKL 84
Score = 28.2 bits (64), Expect = 2.3
Identities = 4/22 (18%), Positives = 4/22 (18%), Gaps = 1/22 (4%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
S K H P
Sbjct: 44 SDERKRHRDIQHI-LPILEDKV 64
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 49.5 bits (119), Expect = 4e-08
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHM-NSLHALLFPYSCNICFRRNSKYTHLSRHKLLVH 529
G+ Y C +C + + + H S + Y C CF+ ++ +++ H ++H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 530 Q 530
+
Sbjct: 65 K 65
Score = 45.6 bits (109), Expect = 1e-06
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 449 QCEYCSQLFRRASAVEKHI-ALKHTGDKPYSCYLCEEKFENSESLRTHM 496
+C+ CS+++ S +H K Y C C ++F +++ H+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 43.3 bits (103), Expect = 8e-06
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHM--PLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGV 598
GE Y C CS H H + + CP C + F+R+ + H + +H +
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 33.7 bits (78), Expect = 0.015
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 678 QRYHLSSNLFRCEKCNLGYSRKDSFEYHM-TSHNQKEQTFMCTQCDFTSSSKDTLNTHAM 736
+ + +RC+ C+ Y+ +F H TSH + + + C C + KD + H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 737 VH 738
+
Sbjct: 62 II 63
Score = 31.4 bits (72), Expect = 0.11
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 46 STNMKNHIMT--HTGSKPYNCSHCTFKGASSQALKYHM 81
+N H +T K Y C C + + H+
Sbjct: 23 ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 31.4 bits (72), Expect = 0.12
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 661 CKLCGFRLKNHKQLKLHQRYHLSSNL--FRCEKCNLGYSRKDSFEYHMTSHNQ 711
CK+C + H N+ + C C ++RKD+ H+ ++
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 29.1 bits (66), Expect = 0.82
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 55 THTGSKPYNCSHC--TFKGASSQALKYHM 81
T G Y C C + S+ H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISN--FCRHY 30
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS-----FPCDKCDYVGGNLSMLTSHQNSHN 434
Y+C +C + S H H +PC C +T+H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 51.5 bits (124), Expect = 7e-08
Identities = 31/160 (19%), Positives = 47/160 (29%), Gaps = 28/160 (17%)
Query: 457 FRRASAVEKHIALK--HTGDKPYSCYLCEEKFENSESLRTHMNSLH--------ALLFPY 506
+++ ++ K C+ F L TH+ H + +
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Query: 507 SCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCT--QCSYQTYHKHALDNH 563
C + L H VH GEK + C C L H
Sbjct: 64 ECPREGKSFKAKYKLVNHI-RVHT-----------GEKPFPCPFPGCGKIFARSENLKIH 111
Query: 564 MPLHSLDRKHQCPV--CLRRFSRQSDNNTHQRRVHGVLKP 601
H+ ++ +C C RRF+ SD H VH K
Sbjct: 112 KRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDKS 150
Score = 36.9 bits (86), Expect = 0.008
Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 14/94 (14%)
Query: 672 KQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH--------NQKEQTFMCTQCD- 722
KQ + + + C+ +S H+T N C +
Sbjct: 11 KQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK 70
Query: 723 -FTSSSKDTLNTHAMVHADELKFSCQNCDFKCSK 755
F + K L H VH E F C C K
Sbjct: 71 SFKAKYK--LVNHIRVHTGEKPFPCPFPG--CGK 100
Score = 35.3 bits (82), Expect = 0.026
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 46 STNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYHMHV 83
S N+K H THTG KP+ C C + A+S K HMHV
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 35.0 bits (81), Expect = 0.031
Identities = 5/44 (11%), Positives = 12/44 (27%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTF 69
I + +C + + H+ P +H +
Sbjct: 18 WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Score = 32.6 bits (75), Expect = 0.21
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
Query: 26 RIH----PHKDKFMCYA-----CYYSTYISTNMKNHIMTHTGSKPYNCSHC----TFKGA 72
+ P ++ +CY S + NHI HTG KP+ C F A
Sbjct: 46 TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF--A 103
Query: 73 SSQALKYHM 81
S+ LK H
Sbjct: 104 RSENLKIHK 112
Score = 32.6 bits (75), Expect = 0.23
Identities = 32/203 (15%), Positives = 47/203 (23%), Gaps = 58/203 (28%)
Query: 550 CSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVE 609
+ + C R FS + TH H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV-----------G 51
Query: 610 KRDQVALRMKPSAFEMQSESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLK 669
+Q C + F K
Sbjct: 52 GPEQNNHVCYWE----------ECPREGKSF----------------------------K 73
Query: 670 NHKQLKLHQRYHLSSNLFRC--EKCNLGYSRKDSFEYHMTSHNQKEQTFMCT--QCD--F 723
+L H R H F C C ++R ++ + H +H E+ F C CD F
Sbjct: 74 AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT-GEKPFKCEFEGCDRRF 132
Query: 724 TSSSKDTLNTHAMVHADELKFSC 746
+SS H VH +
Sbjct: 133 ANSS--DRKKHMHVHTSDKSGPS 153
Score = 31.1 bits (71), Expect = 0.66
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
S++ K H+ HT K S
Sbjct: 135 SSDRKKHMHVHTSDKSGPSS 154
Score = 28.8 bits (65), Expect = 3.5
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 21/103 (20%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDK--CDYVGGNLSMLTSHQNSHNSQT-E 438
+C FK L +H++ +H+ FPC C + L H+ +H T E
Sbjct: 63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTH---TGE 118
Query: 439 VPPILSKNKRQCEY--CSQLFRRASAVEKHIALKHTGDKPYSC 479
P +CE+ C + F +S +KH+ + HT DK
Sbjct: 119 KP-------FKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPS 153
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 49.1 bits (118), Expect = 8e-08
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLHS--LDRKHQCPVCLRRFSRQSDNNTHQRRVHGV 598
GEK Y C C + + H+ K CP C +R+SD H R+ H
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Query: 599 LKP 601
P
Sbjct: 72 SGP 74
Score = 46.4 bits (111), Expect = 7e-07
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLF-PYSCNICFRRNSKYTHLSRHKLLVH 529
H+G+KPY CY+C +F S +++ H+ H + C C ++ + L H H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 38.7 bits (91), Expect = 5e-04
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 46 STNMKNHIMTHTG--SKPYNCSHCTFKGASSQALKYHM 81
S MK HI+ ++C HC A L H+
Sbjct: 28 SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 37.5 bits (88), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 48 NMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
+ + TH+G KPY C C + S +K H+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
Score = 36.7 bits (86), Expect = 0.002
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 411 FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALK 470
+ C C + H +++ C +C + R S + H+ +
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAK-------FHCPHCDTVIARKSDLGVHLRKQ 68
Query: 471 HTGDKPYS 478
H+ P S
Sbjct: 69 HSYSGPSS 76
Score = 34.4 bits (80), Expect = 0.011
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 674 LKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHN-QKEQTFMCTQCDFTSSSKDTLN 732
R H + C C+ +++ + + H+ + + F C CD + K L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 733 TH 734
H
Sbjct: 63 VH 64
Score = 29.8 bits (68), Expect = 0.54
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 560 LDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHG-VLKP 601
+ HS ++ ++C +C RF++ H + H +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK 45
Score = 29.4 bits (67), Expect = 0.86
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 661 CKLCGFRLKNHKQLKLHQRYHLSSNL--FRCEKCNLGYSRKDSFEYHM-TSH 709
C +C R +K+H + N+ F C C+ +RK H+ H
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 27.9 bits (63), Expect = 3.0
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 713 EQTFMCTQCD--FTSSSKDTLNTHAMVHADELK--FSCQNCDFKCSKLS 757
E+ + C C FT S T+ H + E F C +CD ++ S
Sbjct: 13 EKPYECYICHARFTQSG--TMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Score = 26.7 bits (60), Expect = 6.2
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS 410
+ C CD S L H++ HS
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHS 70
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 47.9 bits (115), Expect = 6e-07
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 20/129 (15%)
Query: 472 TGDKPYSC--YLCEEKFENSESLRTHMNSLHALLFPYSCNI--CFRRNSKYTHLSRHKLL 527
+ +P+ C C +++ L+ H H PY C+ C RR S+ L RH+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQR- 59
Query: 528 VHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQC--PVCLRRFSR 584
H G K + C C + L H H+ ++ C P C ++F+R
Sbjct: 60 RH-----------TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Query: 585 QSDNNTHQR 593
+ H
Sbjct: 109 SDELVRHHN 117
Score = 42.5 bits (101), Expect = 5e-05
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 449 QCEY--CSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPY 506
QC++ C + F R+ +++H +HTG KP+ C C+ KF S+ L+TH + H P+
Sbjct: 38 QCDFKDCERRFSRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPF 95
Query: 507 SCNI--CFRRNSKYTHLSRHK 525
SC C ++ ++ L RH
Sbjct: 96 SCRWPSCQKKFARSDELVRHH 116
Score = 36.0 bits (84), Expect = 0.008
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S +K H HTG KP+ C C K + S LK H
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 35.2 bits (82), Expect = 0.018
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 35/113 (30%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHSFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSK 445
Y+C+ DC + S L HQ H T V P
Sbjct: 37 YQCDFKDC-ERRFS----------------------RSDQLKRHQRRH---TGVKPF--- 67
Query: 446 NKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYL--CEEKFENSESLRTHM 496
QC+ C + F R+ ++ H HTG+KP+SC C++KF S+ L H
Sbjct: 68 ---QCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 32.9 bits (76), Expect = 0.10
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 674 LKLHQRYHLSSNLFRCEK--CNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTL 731
L++H R H ++C+ C +SR D + H H + F C C S D L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-GVKPFQCKTCQRKFSRSDHL 82
Query: 732 NTHAMVHADELKFSCQNCDFKCSK 755
TH H E FSC+ C K
Sbjct: 83 KTHTRTHTGEKPFSCRWPS--CQK 104
Score = 31.7 bits (73), Expect = 0.29
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC----TFKGASSQALKYHM 81
S ++K H THTG KP++C F + L H
Sbjct: 79 SDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDE--LVRHH 116
Score = 31.3 bits (72), Expect = 0.35
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC----TFKGASSQALKYHM 81
++++ H HTG KPY C F + LK H
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQ--LKRHQ 58
Score = 29.8 bits (68), Expect = 1.2
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 664 CGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMC--TQC 721
C R QLK HQR H F+C+ C +SR D + H +H E+ F C C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTG-EKPFSCRWPSC 102
Query: 722 DFTSSSKDTLNTHAMVH 738
+ D L H +H
Sbjct: 103 QKKFARSDELVRHHNMH 119
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 47.8 bits (113), Expect = 6e-07
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQ 530
TG + C C ++ L HMN + + N K R + L+
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNETGH--YRDDNHETDNNNPKRWSKPRKRSLLEM 71
Query: 531 KQIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHM 564
+ + V C C + L HM
Sbjct: 72 EGKEDAQKV-----LKCMYCGHSFESLQDLSVHM 100
Score = 40.9 bits (95), Expect = 2e-04
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 647 KLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQR--YHLSSNLFRCEKCNLGYSRKDSFEY 704
KL+ + CK C +L +H H + + N K
Sbjct: 8 KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS 67
Query: 705 HMTSH--NQKEQTFMCTQCDFTSSSKDTLNTH 734
+ ++ C C + S L+ H
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 39.0 bits (90), Expect = 8e-04
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 5/95 (5%)
Query: 625 MQSESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLP-----CKLCGFRLKNHKQLKLHQR 679
S+ C C + T + +HM R + + L +
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG 73
Query: 680 YHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQ 714
+ + +C C + HM ++
Sbjct: 74 KEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 35.5 bits (81), Expect = 0.011
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 673 QLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHM--TSHNQK--EQTFMCTQCDFTSSSK 728
KL+ ++ FRC+ C+ Y HM T H + +T ++ K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 729 DTLNTHAMVHADELKFSCQNCDFKCSKLS 757
+L + C C L
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQ 94
Score = 34.4 bits (78), Expect = 0.033
Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 3/91 (3%)
Query: 563 HMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALR---MK 619
+ + + K +C C + + H + R +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 620 PSAFEMQSESQLTCDICDRVFQTDKQWKLHM 650
+ ++ L C C F++ + +HM
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 34.0 bits (77), Expect = 0.039
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 410 SFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIAL 469
F C C L LT H N +T + R ++ +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMN----ETGHYRDDNHETDNNNPKRWSKPRKRSLLEM-EG 73
Query: 470 KHTGDKPYSCYLCEEKFENSESLRTHM 496
K K C C FE+ + L HM
Sbjct: 74 KEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 33.6 bits (76), Expect = 0.064
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHSFP--CDKCDYVGGNLSMLTSHQNSHNSQTEVPPIL 443
++C C + T L HM + + D ++ + +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA-- 77
Query: 444 SKNKRQCEYCSQLFRRASAVEKH-IALKHTGDKPY 477
+ +C YC F + H I KH
Sbjct: 78 -QKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 30.9 bits (69), Expect = 0.58
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHMH 82
++ K + TG+ + C C+ + L HM+
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 30.5 bits (68), Expect = 0.73
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 319 CEHCDFSASKKSVLLSHLKQHVTRVTRTQHMTPDEETNEIPIEPDLSPDLQKEELVRETR 378
C+ C + L H+ + T H D + P +K L+
Sbjct: 22 CKDCSAAYDTLVELTVHMNE-------TGHYRDDNHETD-NNNPKRWSKPRKRSLLEMEG 73
Query: 379 SMKMYDNYKCNICDCFFKTHSILEDHMK 406
KC C F++ L HM
Sbjct: 74 KEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 29.3 bits (65), Expect = 1.9
Identities = 9/54 (16%), Positives = 15/54 (27%)
Query: 28 HPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
+ + +S ++ K C +C S Q L HM
Sbjct: 47 DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 28.2 bits (62), Expect = 4.8
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 8/90 (8%)
Query: 228 YKTCHKG-ISFTCDECHLCFNTFRRFDSHIR-AHEYTEQCELCNEKVIG------KNQIY 279
Y + G F C +C ++T H+ Y + + K +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 280 FHYYHEHEGYDFNCKQCSFTTKTPKKFIEH 309
E C C + ++ + H
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 46.6 bits (112), Expect = 9e-07
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSC 508
+CE C + F R ++ H+ HTG KPY C C+ +S SL H+ +H+ P+ C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFKC 67
Query: 509 NIC---FRRNSKYTHLSRHK 525
IC R +S L+ H
Sbjct: 68 QICPYASRNSS---QLTVHL 84
Score = 43.6 bits (104), Expect = 1e-05
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHKLL 527
P+ C +C + F + L+THM H + PY C C +S L++H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSS---SLNKHLR- 57
Query: 528 VHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQC 575
+H E+ + C C Y + + L H+ H+ D
Sbjct: 58 IHS-----------DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 41.6 bits (99), Expect = 6e-05
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPP 441
+KC +C F L+ HM+ H+ + C CDY + S L H H ++ P
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIH---SDERP 64
Query: 442 ILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
+C+ C R +S + H+ HTGD S
Sbjct: 65 F------KCQICPYASRNSSQLTVHLRS-HTGDSGPSS 95
Score = 34.3 bits (80), Expect = 0.023
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 661 CKLCG--FRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMC 718
C++CG F K+ LK H R H ++C+ C+ + S H+ H+ E+ F C
Sbjct: 11 CEVCGKCFSRKDK--LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD-ERPFKC 67
Query: 719 TQCDFTSSSKDTLNTHAMVHADELKFSC 746
C + S + L H H + S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 33.6 bits (78), Expect = 0.036
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC--TFKGASSQALKY 79
R H P+K C C Y+ S+++ H+ H+ +P+ C C + +S L
Sbjct: 29 RCHTGVKPYK----CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQ--LTV 82
Query: 80 HM 81
H+
Sbjct: 83 HL 84
Score = 30.9 bits (71), Expect = 0.35
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC--TFKGASSQALKYHM 81
+K H+ HTG KPY C C +SS L H+
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSS--LNKHL 56
Score = 30.1 bits (69), Expect = 0.69
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 55 THTGSKPYNCSHC--TFKGASSQALKYHM 81
+ S P+ C C F LK HM
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDK--LKTHM 28
Score = 28.5 bits (65), Expect = 2.3
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSC 746
+CE C +SRKD + HM H + + C CD+ ++ +LN H +H+DE F C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHT-GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 747 QNCD--FKCS 754
Q C + S
Sbjct: 68 QICPYASRNS 77
Score = 28.2 bits (64), Expect = 2.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNC 64
RIH P K C C Y++ S+ + H+ +HTG +
Sbjct: 57 RIHSDERPFK----CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 46.3 bits (111), Expect = 1e-06
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHA--LLFPY 506
CE C ++FR + +H H+G+KPYSC +C +F+ + + H+ S H + PY
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPY 66
Query: 507 SCNIC---FRRNSKYTHLSRHKLLVH 529
C C F R HL+ H VH
Sbjct: 67 ICQSCGKGFSRPD---HLNGHIKQVH 89
Score = 44.8 bits (107), Expect = 4e-06
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Query: 505 PYSCNIC---FRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHAL 560
+C IC FR HL+RHKL H GEK YSC C + K +
Sbjct: 7 GVACEICGKIFRDVY---HLNRHKL-SHS-----------GEKPYSCPVCGLRFKRKDRM 51
Query: 561 DNHMPLHS--LDRKHQCPVCLRRFSRQSDNNTHQRRVH 596
H+ H + + + C C + FSR N H ++VH
Sbjct: 52 SYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 35.5 bits (83), Expect = 0.007
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 661 CKLCG--FRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHN-QKEQTFM 717
C++CG FR H L H+ H + C C L + RKD YH+ SH+ + ++
Sbjct: 10 CEICGKIFRDVYH--LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 718 CTQCDFTSSSKDTLNTH 734
C C S D LN H
Sbjct: 68 CQSCGKGFSRPDHLNGH 84
Score = 35.2 bits (82), Expect = 0.010
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
G +C C + L+ H HS ++ + CPVC RF R+ + H R
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 34.0 bits (79), Expect = 0.023
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPP 441
C IC F+ L H HS + C C ++ H SH+ P
Sbjct: 8 VACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP- 65
Query: 442 ILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDK 475
C+ C + F R + HI H+G
Sbjct: 66 ------YICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 34.0 bits (79), Expect = 0.029
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC--TFKGASSQALKYHM 81
++ H ++H+G KPY+C C FK + YH+
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDR--MSYHV 55
Score = 30.5 bits (70), Expect = 0.39
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELK--F 744
CE C + H SH+ E+ + C C KD ++ H H + +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHS-GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 745 SCQNC 749
CQ+C
Sbjct: 67 ICQSC 71
Score = 30.2 bits (69), Expect = 0.69
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTG--SKPYNCSHC--TFKGASSQALKYHM 81
H + + C C M H+ +H G KPY C C F L H+
Sbjct: 28 LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDH--LNGHI 85
Query: 82 H 82
Sbjct: 86 K 86
Score = 27.5 bits (62), Expect = 5.1
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 56 HTGSKPYNCSHC--TFKGASSQALKYHM 81
+GS C C F+ L H
Sbjct: 2 SSGSSGVACEICGKIFRDVYH--LNRHK 27
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 43.6 bits (104), Expect = 5e-06
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 537 GSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
GS C++CSY K AL H +H DR +C C + S+ + H +
Sbjct: 1 GSSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 43.6 bits (104), Expect = 6e-06
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
C C YS ++ H H +P+ C++C+F L HM
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 42.1 bits (100), Expect = 2e-05
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 470 KHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHK 525
+ P C C + +LR H +H P+ CN C + ++LS+H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 33.2 bits (77), Expect = 0.027
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVH 738
+C +C+ S K + H H ++ F C C F + L+ H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHC-TDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 32.9 bits (76), Expect = 0.034
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLSMLTSHQNSH 433
KC+ C + + L H + +H F C+ C + S L+ H
Sbjct: 10 EKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 31.7 bits (73), Expect = 0.088
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 413 CDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHT 472
C +C Y + + L H+ H P +C YCS ++ S + KH+ K
Sbjct: 12 CSECSYSCSSKAALRIHERIH---CTDRPF------KCNYCSFDTKQPSNLSKHMK-KFH 61
Query: 473 GDKPYSCY 480
GD
Sbjct: 62 GDMSGPSS 69
Score = 31.3 bits (72), Expect = 0.12
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 55 THTGSKPYNCSHCTFKGASSQALKYHM 81
+ + P CS C++ +S AL+ H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHE 29
Score = 29.8 bits (68), Expect = 0.46
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
RIH F C C + T +N+ H+ G S
Sbjct: 30 RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 29.4 bits (67), Expect = 0.63
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 661 CKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH 709
C C + + L++H+R H + F+C C+ + + HM
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 28.2 bits (64), Expect = 1.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 716 FMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNCDF 751
C++C ++ SSK L H +H + F C C F
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSF 45
Score = 28.2 bits (64), Expect = 1.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 319 CEHCDFSASKKSVLLSHLKQH 339
C +C F + S L H+K+
Sbjct: 40 CNYCSFDTKQPSNLSKHMKKF 60
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 43.7 bits (104), Expect = 6e-06
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSC--YLCEEKFENSESLRTHMNSLHALLFPYS 507
C ++F + H +H K +SC C + F + L+ HM LH+ Y
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYI 70
Query: 508 CNIC 511
C
Sbjct: 71 CEFS 74
Score = 42.9 bits (102), Expect = 1e-05
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 17/85 (20%)
Query: 471 HTGDKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCN--ICFRRNSKYTHLSRHKL 526
+G C C F N + L H H +SC C + + HL H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM- 60
Query: 527 LVHQKQIDGVGSVEIGEK-YSCTQC 550
+H + Y C
Sbjct: 61 KLHS-----------DTRDYICEFS 74
Score = 35.2 bits (82), Expect = 0.008
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
++K H+ H+ ++ Y C
Sbjct: 53 KKHLKEHMKLHSDTRDYICEFS 74
Score = 30.2 bits (69), Expect = 0.36
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 46 STNMKNHI-MTHTGSKPYNCSH--CTFKGASSQALKYHMHV 83
+ +H H K ++C C + LK HM +
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 26.7 bits (60), Expect = 6.7
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 687 FRC--EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCD----FTSSSKDTLNTHAMVHAD 740
C C +S + +H + +++F C + F L H +H+D
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKK--HLKEHMKLHSD 65
Query: 741 ELKFSCQNC 749
+ C+
Sbjct: 66 TRDYICEFS 74
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 43.6 bits (104), Expect = 9e-06
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHM 496
QC C + F R+ + HI HTG+KP++C +C KF S+ + H
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHT 82
Score = 41.3 bits (98), Expect = 5e-05
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 505 PYSCNI--CFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALD 561
PY+C + C RR S+ L+RH +H G+K + C C L
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIR-IHT-----------GQKPFQCRICMRNFSRSDHLT 51
Query: 562 NHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
H+ H+ ++ C +C R+F+R + H +
Sbjct: 52 THIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 39.8 bits (94), Expect = 2e-04
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 475 KPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQ 532
+PY+C + C+ +F S SL H+ H P+ C IC R S+ HL+ H H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR-THT-- 58
Query: 533 IDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLH 567
GEK ++C C + H +H
Sbjct: 59 ---------GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.8 bits (89), Expect = 0.001
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 674 LKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNT 733
L H R H F+C C +SR D H+ +H E+ F C C + D
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-GEKPFACDICGRKFARSDERKR 80
Query: 734 HAMVHADE 741
H +H +
Sbjct: 81 HTKIHLRQ 88
Score = 36.7 bits (86), Expect = 0.003
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S ++ HI THTG KP+ C C K A S K H
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 35.9 bits (84), Expect = 0.006
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S ++ HI HTG KP+ C C + S L H+
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 33.6 bits (78), Expect = 0.029
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 543 EK-YSC--TQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
E+ Y+C C + +L H+ +H+ + QC +C+R FSR TH R
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 30.5 bits (70), Expect = 0.37
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 687 FRC--EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKF 744
+ C E C+ +S+ S H+ H ++ F C C S D L TH H E F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 745 SCQNCDFKCSKLS 757
+C C K ++
Sbjct: 64 ACDICGRKFARSD 76
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 43.8 bits (104), Expect = 1e-05
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 395 FKTHSILEDHMKALHSFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQC--EY 452
+ + + +H C V S L +H +H E P +C E
Sbjct: 3 SGSSGPDLEKRR-IHYCDYPGCTKVYTKSSHLKAHLRTHTG--EKP-------YKCTWEG 52
Query: 453 CSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHM 496
C F R+ + +H KHTG KP+ C +C F S+ L HM
Sbjct: 53 CDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 35.3 bits (82), Expect = 0.011
Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 20/113 (17%)
Query: 485 KFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK 544
+S H +P C + ++S HL H L H GEK
Sbjct: 2 SSGSSGPDLEKRRI-HYCDYPG-CTKVYTKSS---HLKAH-LRTH-----------TGEK 44
Query: 545 -YSCT--QCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRR 594
Y CT C ++ L H H+ + QC VC R FSR H +R
Sbjct: 45 PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 33.8 bits (78), Expect = 0.041
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S + H HTG+KP+ C C + S L HM
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 33.0 bits (76), Expect = 0.057
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 674 LKLHQRYHLSSNLFRC--EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTL 731
LK H R H ++C E C+ ++R D H H + F C C+ + S D L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT-GAKPFQCGVCNRSFSRSDHL 91
Query: 732 NTHAMVHAD 740
H H +
Sbjct: 92 ALHMKRHQN 100
Score = 32.6 bits (75), Expect = 0.091
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 46 STNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYHMH 82
S+++K H+ THTG KPY C+ C ++ A S L H
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Score = 32.2 bits (74), Expect = 0.14
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 632 TCDI--CDRVFQTDKQWKLHMGFHNTKRRLPCKL--CGFRLKNHKQLKLHQRYHLSSNLF 687
CD C +V+ K H+ H ++ C C +R +L H R H + F
Sbjct: 17 YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 688 RCEKCNLGYSRKDSFEYHMTSH 709
+C CN +SR D HM H
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRH 98
Score = 29.5 bits (67), Expect = 1.2
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 674 LKLHQRYHLSSNLFRCEK--CNLGYSRKDSFEYHMTSHNQKEQTFMCT--QCDFTSSSKD 729
+R H C+ C Y++ + H+ +H E+ + CT CD+ + D
Sbjct: 9 DLEKRRIH------YCDYPGCTKVYTKSSHLKAHLRTHT-GEKPYKCTWEGCDWRFARSD 61
Query: 730 TLNTHAMVHADELKFSCQNCD 750
L H H F C C+
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCN 82
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 43.2 bits (103), Expect = 2e-05
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSC 508
C+ C + F S ++H+++ H G +PY C +C +KF+ L HM +H + PY C
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYEC 68
Query: 509 NIC---FRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQC 550
NIC F RH V K Y +
Sbjct: 69 NICAKRFMWRD---SFHRH---VT-----------SCTKSYEAAKA 97
Score = 41.3 bits (98), Expect = 9e-05
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 23/120 (19%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHKLL 527
+GDK Y C C + F + HM S+H L PY C +C F+ L+
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKH--------HLV 54
Query: 528 VHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQS 586
H K + G K Y C C+ + + + H + S + ++ + + S
Sbjct: 55 GHMK-------IHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEAS 105
Score = 35.9 bits (84), Expect = 0.007
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 18/113 (15%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPP 441
Y C C F S + HM +H + C C L H H P
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG--IKP- 65
Query: 442 ILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRT 494
+C C++ F + +H+ + K Y E+ + +
Sbjct: 66 ------YECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTTEASGPSS 109
Score = 31.6 bits (73), Expect = 0.23
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC--TFKGASSQALKYHMH 82
++ H+ HTG KPY C+ C F S H+
Sbjct: 50 KHHLVGHMKIHTGIKPYECNICAKRFMWRDS--FHRHVT 86
Score = 31.3 bits (72), Expect = 0.33
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC--TFKGASSQALKYHM 81
+ H+ H G +PY C C FK L HM
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHH--LVGHM 57
Score = 28.9 bits (66), Expect = 2.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
G+K Y C QC HK D HM +H R + C VC ++F + H +
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 28.2 bits (64), Expect = 4.2
Identities = 5/25 (20%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 52 HIMTHTGSKPYNCSHC--TFKGASS 74
H + +K Y + AS
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASG 106
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 42.8 bits (100), Expect = 3e-05
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 671 HKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTS---HNQKEQTFMCTQCDFTSSS 727
H +Q+ + C+ C + F +H+ S + +++C +C+F +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 728 KDTLNTH-AMVHADELKFSCQ 747
D L+ H H E F
Sbjct: 63 YDALSEHNLKYHPGEENFKLT 83
Score = 35.9 bits (82), Expect = 0.006
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 180 KCKLCNYQAVNIKGIRAHVFRKH--LQNTVTYSCKKCPFETQFKVTLGDHYKTCHKG 234
+CK C +Q ++ HV +H + +Y C +C F T+ L +H H G
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Score = 35.9 bits (82), Expect = 0.007
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 197 HVFRKHLQNTVTYSCKKCPFETQFKVTLGDHYKTCHKGI----SFTCDECHLCFNTFRRF 252
H +++ + Y CK C F+T H + H + S+ C EC+ +
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 253 DSHIRAHEYTEQ 264
H + E+
Sbjct: 67 SEHNLKYHPGEE 78
Score = 32.8 bits (74), Expect = 0.094
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 291 FNCKQCSFTTKTPKKFIEHKEAGHF------TWNCEHCDFSASKKSVLLSHLKQH 339
+ CK C+F T F H ++ H ++ C C+F + L H ++
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY 73
Score = 32.8 bits (74), Expect = 0.095
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 470 KHTGDKPYSCYLCEEKFENSESLRTHMNSLH---ALLFPYSCNICFRRNSKYTHLSRHKL 526
+ Y C C + + H++S H L Y C C +Y LS H L
Sbjct: 12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL 71
Query: 527 LVH 529
H
Sbjct: 72 KYH 74
Score = 30.5 bits (68), Expect = 0.49
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 246 FNTFRRFDSHIRAHEYTEQCELCNEKVIGKNQIYFHYYHEHEGYD----FNCKQCSFTTK 301
+ + + E +C+ C + N FH EH + C +C+F TK
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 302 TPKKFIEHKEAGH 314
EH H
Sbjct: 62 RYDALSEHNLKYH 74
Score = 30.5 bits (68), Expect = 0.58
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTG---DKPYSCYLCEEKFENSESLRTHMNSLHALLFP 505
+C+YC+ + H+ +H + Y C C + ++L H H
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN 79
Query: 506 YSCNICFRRN 515
+ + R N
Sbjct: 80 FKLTMVKRNN 89
Score = 30.5 bits (68), Expect = 0.61
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 544 KYSCTQCSYQTYHKHALDNHM----PLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVL 599
Y C C++QT + H+ P L+ + C C R + H + H
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP-- 75
Query: 600 KPTPLEMQVEKRD 612
++ + KR+
Sbjct: 76 GEENFKLTMVKRN 88
Score = 29.0 bits (64), Expect = 1.7
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 645 QWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLH-QRYHLSSNL---FRCEKCNLGYSRKD 700
+ + CK C F+ + H H + L + C +CN R D
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 701 SFEYHMTSHNQKEQTFMCT 719
+ H ++ E+ F T
Sbjct: 65 ALSEHNLKYHPGEENFKLT 83
Score = 29.0 bits (64), Expect = 1.9
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 371 EELVRETRSMKMYDNYKCNICDCFFKTHSILEDHMKALH-------SFPCDKCDYVGGNL 423
++ K+ Y+C C ++ H+ + H S+ C +C+++
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 424 SMLTSHQNSH 433
L+ H +
Sbjct: 64 DALSEHNLKY 73
Score = 28.2 bits (62), Expect = 3.5
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 632 TCDICDRVFQTDKQWKLHMGFHNTKRRL----PCKLCGFRLKNHKQLKLHQ-RYHLSSNL 686
C C + H+ + L C C F K + L H +YH
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN 79
Query: 687 FRC 689
F+
Sbjct: 80 FKL 82
Score = 27.8 bits (61), Expect = 5.6
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 28 HPHKDKFMCYACYYSTYISTNMKNHIMT-HTG---SKPYNCSHCTFKGASSQALKYH 80
+ + C C + T H+ + H + Y C C F AL H
Sbjct: 13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 44.5 bits (106), Expect = 3e-05
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 27/157 (17%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSC--YLCEEKFENSESLRTHMNSLHAL-LFPYS 507
E C + F + +H L HTG+K ++C C+ +F +++ H N H + + Y
Sbjct: 48 EGCEKGFTSLHHLTRHS-LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV 106
Query: 508 CNI-----CFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQ--CSYQTYHKHA 559
C+ F++++ L H+ H + Y C C +
Sbjct: 107 CHFENCGKAFKKHN---QLKVHQF-SH-----------TQQLPYECPHEGCDKRFSLPSR 151
Query: 560 LDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVH 596
L H +H+ + C + H H
Sbjct: 152 LKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 44.1 bits (105), Expect = 5e-05
Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 18/155 (11%)
Query: 386 YKCNICDC--FFKTHSILEDHMKALHS----FPCD--KCDYVGGNLSMLTSHQNSHNSQT 437
+ C C F + L H H+ F CD CD + + H N ++
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 101
Query: 438 EVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSC--YLCEEKFENSESLRTH 495
E C + F++ + ++ H HT PY C C+++F L+ H
Sbjct: 102 ICV-----YVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRH 155
Query: 496 MNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQ 530
+HA + C +T +H HQ
Sbjct: 156 E-KVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 32.6 bits (75), Expect = 0.27
Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 30/137 (21%)
Query: 471 HTGDKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCN--IC---FRRNSKYTHLSR 523
K Y C C + + L+ H+ H P+ C C F HL+R
Sbjct: 7 PVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGCEKGFTSLH---HLTR 62
Query: 524 HKLLVHQKQIDGVGSVEIGEK-YSCTQ--CSYQTYHKHALDNHMPLHSLDRKHQ--CPV- 577
H L H GEK ++C C + K + H + C
Sbjct: 63 HS-LTH-----------TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE 110
Query: 578 -CLRRFSRQSDNNTHQR 593
C + F + + HQ
Sbjct: 111 NCGKAFKKHNQLKVHQF 127
Score = 29.9 bits (68), Expect = 2.4
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKG-ASSQALKYHMHV 83
+ +K H H G C+F G + LK+
Sbjct: 149 PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187
Score = 28.7 bits (65), Expect = 5.1
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC----TFKGASSQALKYHM 81
+K H +HT PY C H F S LK H
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR--LKRHE 156
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 42.4 bits (101), Expect = 3e-05
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 20/84 (23%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHKLL 527
K + C C F S +L H H PY+C+IC FRR HL H+
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQD---HLRDHR-Y 66
Query: 528 VHQKQIDGVGSVEIGEK-YSCTQC 550
+H EK + C +C
Sbjct: 67 IH-----------SKEKPFKCQEC 79
Score = 32.0 bits (74), Expect = 0.18
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 19/100 (19%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKCDYVGGNLSMLTSHQNSHNSQTEVPP 441
+ C C F L H + H+ + CD C L H+ H+ E P
Sbjct: 18 FICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSK--EKP- 73
Query: 442 ILSKNKRQCEYCSQLFRRASAVEKH--IALKHTGDKPYSC 479
+C+ C + F ++ + H + H +
Sbjct: 74 ------FKCQECGKGFCQSRTLAVHKTL---HMQTSSPTA 104
Score = 30.5 bits (70), Expect = 0.50
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
K +F+C C S N+ H THT +PY C C
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC 51
Score = 30.1 bits (69), Expect = 0.66
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
S+ + K + C C
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFC 23
Score = 29.3 bits (67), Expect = 1.5
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
+K + C C + L H H+ +R + C +C + F RQ H+
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Score = 28.9 bits (66), Expect = 2.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
++++H H+ KP+ C C
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQEC 79
Score = 27.0 bits (61), Expect = 9.1
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 674 LKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNT 733
+ + F C+ C +++ + H +H E+ + C C +D L
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHT-DERPYTCDICHKAFRRQDHLRD 63
Query: 734 HAMVHADELKFSCQNC 749
H +H+ E F CQ C
Sbjct: 64 HRYIHSKEKPFKCQEC 79
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 41.3 bits (98), Expect = 4e-05
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHK 525
DKPY C C+ F +L +H ++H PY CNIC F R + +L H
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPA---NLKTHT 65
Score = 31.3 bits (72), Expect = 0.15
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
+K Y C +C +K L +H +H+ ++ ++C +C +F+R ++ TH R
Sbjct: 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 30.5 bits (70), Expect = 0.25
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
+ P+K C C S N+ +H HTG KPY C+ C
Sbjct: 10 HMTHSDKPYK----CDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51
Score = 30.1 bits (69), Expect = 0.46
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 45 ISTNMKNHIMTHTGSKPYNCSHC 67
+ + +H KPY C C
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRC 23
Score = 27.0 bits (61), Expect = 4.4
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 674 LKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNT 733
H S ++C++C + K + H T H E+ + C C + L T
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHT-GEKPYRCNICGAQFNRPANLKT 63
Query: 734 HAMVH 738
H +H
Sbjct: 64 HTRIH 68
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 41.5 bits (98), Expect = 4e-05
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 470 KHTGDKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHK 525
+PY+C + C+ +F S+ L H+ H P+ C IC R S+ HL+ H
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 40.0 bits (94), Expect = 1e-04
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHM 496
E C + F R+ + +HI HTG KP+ C +C F S+ L TH+
Sbjct: 25 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 38.1 bits (89), Expect = 6e-04
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 542 GEK-YSCT--QCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRR 594
+ Y+C C + L H+ +H+ + QC +C+R FSR TH R
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 33.8 bits (78), Expect = 0.021
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S + HI HTG KP+ C C + S L H+
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 29.2 bits (66), Expect = 0.77
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 664 CGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH 709
C R +L H R H F+C C +SR D H+ +H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 27.7 bits (62), Expect = 2.7
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 687 FRC--EKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVH 738
+ C E C+ +SR D H+ H ++ F C C S D L TH H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTH 72
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 41.4 bits (98), Expect = 6e-05
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 22/87 (25%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNS---LHALLFPYSCNIC---FRRNSKYTHLSRH 524
HTG+KPY+C C++ F + L H + + + C+ C F R + ++RH
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN---TMARH 66
Query: 525 KLLVHQKQIDGVGSVEIGEK-YSCTQC 550
G
Sbjct: 67 A-DNCA-----------GPDGVEGENS 81
Score = 37.9 bits (89), Expect = 9e-04
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 674 LKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH---NQKEQTFMCTQCDFTSSSKDT 730
R H + C C+ + +K + H + N F+C++C T + ++T
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 731 LNTHAMVHADELKFSCQNC 749
+ HA A +N
Sbjct: 63 MARHADNCAGPDGVEGENS 81
Score = 32.5 bits (75), Expect = 0.077
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 48 NMKNHIMTHTGSKPYNCSHC--TFKGASSQALKYHM 81
+ + THTG KPY CSHC TF Q L H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTF--RQKQLLDMHF 35
Score = 32.1 bits (74), Expect = 0.10
Identities = 3/22 (13%), Positives = 4/22 (18%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
M H G +
Sbjct: 60 RNTMARHADNCAGPDGVEGENS 81
Score = 31.3 bits (72), Expect = 0.21
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLH----SLDRKHQCPVCLRRFSRQSDNNTHQR 593
GEK Y+C+ C K LD H + + C C + F+R++ H
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 27.1 bits (61), Expect = 5.7
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 46 STNMKNHIMTHTG----SKPYNCSHC--TFKGASSQALKYHM 81
+ H + + CS C TF ++ + H
Sbjct: 28 KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT--MARHA 67
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.5 bits (94), Expect = 7e-05
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 33 KFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
K++C C + +K HI THT +PY+C++C F + L HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 39.7 bits (92), Expect = 1e-04
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 544 KYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHG 597
KY C +C + L H+ H+ R + C C F + + H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 37.0 bits (85), Expect = 0.001
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 661 CKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH 709
C+ CG R K LK H R H + C CN + K + HM S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 33.9 bits (77), Expect = 0.014
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADE 741
+ CE+C + + + H+ +H + + CT C+F+ +K L H A
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHT-DVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 33.5 bits (76), Expect = 0.017
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNS 498
CE C ++ S ++KHI HT +PY C C F+ +L HM S
Sbjct: 4 CEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 30.5 bits (68), Expect = 0.20
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 13/68 (19%)
Query: 506 YSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALDNHM 564
Y C C R K + L +H + Y CT C++ K L HM
Sbjct: 2 YICEECGIRXKKPSMLKKHI------------RTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Query: 565 PLHSLDRK 572
+ +K
Sbjct: 50 KSKAHSKK 57
Score = 30.5 bits (68), Expect = 0.24
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 716 FMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNCDFKCSKLSCVR 760
++C +C L H H D + C C+F +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLT 46
Score = 29.3 bits (65), Expect = 0.58
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 293 CKQCSFTTKTPKKFIEHKE--AGHFTWNCEHCDFSASKKSVLLSHLKQH 339
C++C K P +H ++C +C+FS K L H+K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.8 bits (61), Expect = 1.7
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 209 YSCKKCPFETQFKVTLGDHYKTCHKGISFTCDECHLCFNTFRRFDSHIRAH 259
Y C++C + L H +T + C C+ F T H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.0 bits (59), Expect = 3.9
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 413 CDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKHT 472
C++C SML H +H C YC+ F+ + KH+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDV---------RPYHCTYCNFSFKTKGNLTKHMK-SKA 53
Query: 473 GDK 475
K
Sbjct: 54 HSK 56
Score = 26.6 bits (58), Expect = 4.8
Identities = 12/50 (24%), Positives = 16/50 (32%)
Query: 632 TCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYH 681
C+ C + K H+ H R C C F K L H +
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 26.2 bits (57), Expect = 7.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSK 60
R H + C C +S N+ H+ + SK
Sbjct: 22 RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 41.0 bits (97), Expect = 8e-05
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 409 HSFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQC--EYCSQLFRRASAVEKH 466
H+ C S L +H +H E P C + C F R+ + +H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTG--EKP-------YHCDWDGCGWKFARSDELTRH 56
Query: 467 IALKHTGDKPYSCYLCEEKFENSESLRTHM 496
KHTG +P+ C C+ F S+ L HM
Sbjct: 57 YR-KHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 39.8 bits (94), Expect = 2e-04
Identities = 25/127 (19%), Positives = 37/127 (29%), Gaps = 42/127 (33%)
Query: 470 KHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNI--CFRRNSKYTHLSRHKLL 527
K T C + + S L+ H+ + H PY C+ C + ++ L+RH
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRH--- 56
Query: 528 VHQKQIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSD 587
H+ R QC C R FSR
Sbjct: 57 ------------------------------------YRKHTGHRPFQCQKCDRAFSRSDH 80
Query: 588 NNTHQRR 594
H +R
Sbjct: 81 LALHMKR 87
Score = 33.7 bits (78), Expect = 0.035
Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 3/88 (3%)
Query: 653 HNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRC--EKCNLGYSRKDSFEYHMTSHN 710
CG LK H R H + C + C ++R D H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 711 QKEQTFMCTQCDFTSSSKDTLNTHAMVH 738
+ F C +CD S D L H H
Sbjct: 62 -GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 30.6 bits (70), Expect = 0.35
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
S + H HTG +P+ C C + S L HM
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 29.8 bits (68), Expect = 0.60
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 46 STNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYHM 81
S+++K H+ THTG KPY+C C +K A S L H
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 27.5 bits (62), Expect = 4.6
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT--QCDFTSSSKDTLNTHAMVHADELKF 744
C Y++ + H+ +H E+ + C C + + D L H H F
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHT-GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 745 SCQNCD 750
CQ CD
Sbjct: 67 QCQKCD 72
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 41.7 bits (99), Expect = 8e-05
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 475 KPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQ 532
+ +C C + F ++ ++R H+++ H + C C + + + L RH+L VH
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT-HGPR-VHVCAECGKAFVESSKLKRHQL-VHT-- 58
Query: 533 IDGVGSVEIGEK-YSCT--QCSYQTYHKHALDNHMPLHSLDRKHQCPV--CLRRFSRQSD 587
GEK + CT C + L H+ +H+ DR + CP C ++F++ ++
Sbjct: 59 ---------GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 588 NNTHQR 593
+H
Sbjct: 110 LKSHIL 115
Score = 32.1 bits (74), Expect = 0.23
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 26 RIH---PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC----TFKGASSQALK 78
H H C C + S+ +K H + HTG KP+ C+ F + L+
Sbjct: 28 HTHGPRVHV----CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN--LR 81
Query: 79 YHM 81
H+
Sbjct: 82 THV 84
Score = 31.7 bits (73), Expect = 0.29
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 46 STNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYHM 81
N++ H+ HTG +PY C C K A S LK H+
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 29.4 bits (67), Expect = 1.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 46 STNMKNHIMTHTGSKPY 62
STN+K+HI+TH +K
Sbjct: 107 STNLKSHILTHAKAKNN 123
Score = 27.5 bits (62), Expect = 7.1
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCT 719
P K C +++ ++ H H + C +C + + H H E+ F CT
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT-GEKPFQCT 66
Query: 720 --QCD--FTSSSKDTLNTHAMVHADELKFSCQNCDFKCSK 755
C F+ L TH +H + + C C+K
Sbjct: 67 FEGCGKRFSLDF--NLRTHVRIHTGDRPYVCPFDG--CNK 102
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKF 486
C+ C + F R + HI HT ++P+ C +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 37.2 bits (87), Expect = 7e-04
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC 511
+ KPY C C + F + L H+ +H P+ C +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 29.9 bits (68), Expect = 0.31
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 562 NHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVH 596
+ S+ + + C C + FSR N H ++VH
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 27.5 bits (62), Expect = 2.4
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 46 STNMKNHI-MTHTGSKPYNCSHC 67
++ HI HT +P+ C
Sbjct: 25 PDHLNGHIKQVHTSERPHKCQVW 47
Score = 27.5 bits (62), Expect = 2.4
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 386 YKCNICDCFFKTHSILEDHMKALHS----FPCDKC 416
Y C C F L H+K +H+ C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 27.2 bits (61), Expect = 2.4
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + + KPY C C
Sbjct: 2 SSGSSGSVGKPYICQSC 18
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.5 bits (91), Expect = 5e-04
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 404 HMKALHSFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAV 463
++ + C C+ +L SH+ +N C YCS F
Sbjct: 10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC-----------RNAAVCPYCSLRFFSPELK 58
Query: 464 EKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLH 500
++H + K +C C F++S S+ H +H
Sbjct: 59 QEHES--KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 38.3 bits (88), Expect = 0.001
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 654 NTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKE 713
K C+LC +L + + H+R N C C+L + + + H + K+
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 714 QTFMCTQCDFTSSSKDTLNTHAM 736
C +C T S ++ H +
Sbjct: 70 --LTCLECMRTFKSSFSIWRHQV 90
Score = 37.2 bits (85), Expect = 0.003
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 440 PPILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSL 499
P+ +K QC C+ H L C C +F + E + H +
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHES-- 63
Query: 500 HALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQ 532
+C C R + RH++ VH +
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 36.4 bits (83), Expect = 0.005
Identities = 20/101 (19%), Positives = 27/101 (26%), Gaps = 14/101 (13%)
Query: 505 PYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHM 564
Y C +C + S H+ L C CS + + H
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCR-------------NAAVCPYCSLRFFSPELKQEHE 62
Query: 565 PLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTPLE 605
+K C C+R F HQ VH P
Sbjct: 63 S-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Score = 35.3 bits (80), Expect = 0.015
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 626 QSESQLTCDICDRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSN 685
+++ C +C+ + + H C C R + + + H+
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA--VCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 686 LFRCEKCNLGYSRKDSFEYH-MTSHNQ 711
C +C + S H + HNQ
Sbjct: 70 -LTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 33.3 bits (75), Expect = 0.064
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 237 FTCDECHLCFNTFRRFDSHIRAHEYTEQCELCNEKVIGKNQIYFHYYHEHEGYDFNCKQC 296
+ C C+ ++ SH R C C+ + H E C +C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESK-CEYKKLTCLEC 75
Query: 297 SFTTKTPKKFIEHKEAGH 314
T K+ H+ H
Sbjct: 76 MRTFKSSFSIWRHQVEVH 93
Score = 32.2 bits (72), Expect = 0.17
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 201 KHLQNTVTYSCKKCPFETQFKVTLGDHYKTCHKGISFTCDECHLCFNTFRRFDSHIRAHE 260
++N Y C+ C + + G H + C + C C L F + H E
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHESKCE 66
Query: 261 YTE-QCELCNEKVIGKNQIYFHYYHEH 286
Y + C C I+ H H
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 27.9 bits (61), Expect = 5.4
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 539 VEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRR 594
VE E Y C C+ + +H L CP C RF H+ +
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESK 64
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 38.4 bits (90), Expect = 5e-04
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSC--YLCEEKFENSESLRTHMNSLH---ALLF 504
E C + F++ + ++ H HT PY C C+++F L+ H H
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKK 63
Query: 505 PYSCNICFRRNSKYTHLSRH 524
SC+ + + Y
Sbjct: 64 DDSCSFVGKTWTLYLKHVAE 83
Score = 34.9 bits (81), Expect = 0.011
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 451 EYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLH 500
E C + F S +++H H G C + H+ H
Sbjct: 37 EGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 33.0 bits (76), Expect = 0.052
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 46 STNMKNHIMTHTGSKPYNCSHCTFKG-ASSQALKYHMHV 83
+ +K H H G C+F G + LK+
Sbjct: 46 PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 84
Score = 33.0 bits (76), Expect = 0.054
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 46 STNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYHMHV 83
+K H +HT PY C H C + + LK H V
Sbjct: 16 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
Score = 31.1 bits (71), Expect = 0.25
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 3/58 (5%)
Query: 542 GEK-YSCTQ--CSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVH 596
+ Y C C + L H +H+ + C + H H
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 27.2 bits (61), Expect = 5.8
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 632 TCDICDRVFQTDKQWKLHMGFHNTKRRLPCK--LCGFRLKNHKQLKLHQRYHLSSNLFRC 689
+ C + F+ Q K+H H + C C R +LK H++ H +
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 690 EKCNLGYSRKDSFEYHM 706
+ C+ + H+
Sbjct: 65 DSCSFVGKTWTLYLKHV 81
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 37.8 bits (89), Expect = 7e-04
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHK 525
H+G+KPY C C + F S L H +H PY C C F +NS L H+
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQ-RVHTGEKPYKCLECGKAFSQNS---GLINHQ 62
Score = 34.8 bits (81), Expect = 0.009
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 449 QCEYCSQLFRRASAVEKH--IALKHTGDKPYSCYLCEEKFENSESLRTH 495
C C + F R+S + +H + HTG+KPY C C + F + L H
Sbjct: 16 GCVECGKAFSRSSILVQHQRV---HTGEKPYKCLECGKAFSQNSGLINH 61
Score = 28.6 bits (65), Expect = 1.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
GEK Y C +C L H +H+ ++ ++C C + FS+ S HQR
Sbjct: 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 28.6 bits (65), Expect = 1.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
IH + + C C + S+ + H HTG KPY C C
Sbjct: 7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 26.7 bits (60), Expect = 7.1
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
H+G KPY C C
Sbjct: 5 SSGIHSGEKPYGCVEC 20
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 37.8 bits (89), Expect = 8e-04
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHK 525
+ Y C C + F +S L H H PY C+ C F + S HL H
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRS---HLIGHH 66
Score = 30.1 bits (69), Expect = 0.41
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 8/46 (17%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHC 67
+K C C S S+++ H THTG KPY C C
Sbjct: 11 WQQRERRRYK----CDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 29.3 bits (67), Expect = 0.85
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
S + + Y C C
Sbjct: 3 SGSSGRSEWQQRERRRYKCDEC 24
Score = 27.4 bits (62), Expect = 4.2
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
+ Y C +C H L H H+ ++ ++C C + F ++S H R
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 36.3 bits (85), Expect = 0.001
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHM 496
G+KPY C +C +F + ++L++H+
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 34.0 bits (79), Expect = 0.007
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 52 HIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
+ G KPY C C + Q LK H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 32.9 bits (76), Expect = 0.019
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYS 478
CE C FR ++ H+ + HTG P S
Sbjct: 13 PCEICGTRFRHLQTLKSHLRI-HTGSGPSS 41
Score = 30.9 bits (71), Expect = 0.093
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 46 STNMKNHIMTHTGSKPY 62
+K+H+ HTGS P
Sbjct: 24 LQTLKSHLRIHTGSGPS 40
Score = 27.5 bits (62), Expect = 1.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 542 GEK-YSCTQCSYQTYHKHALDNHMPLH 567
GEK Y C C + H L +H+ +H
Sbjct: 8 GEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 36.7 bits (86), Expect = 0.001
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLH 500
CE C++ F R +++H HT +KPY C LC F + L H +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.8 bits (76), Expect = 0.026
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 475 KPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHKLLVH 529
+ + C +C F E L+ H S H PY C +C F R L RH +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRD---LLIRHAQKIH 54
Score = 31.7 bits (73), Expect = 0.078
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 545 YSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVH 596
+ C C+ + L H H+ ++ + C +C R F+R+ H +++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 29.8 bits (68), Expect = 0.38
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
++K H +HT KPY C C
Sbjct: 15 QEHLKRHYRSHTNEKPYPCGLC 36
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 38.0 bits (88), Expect = 0.001
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRN---SKYTHLSRHKLL 527
C+ F L TH+ H + ++C+ + +++KL+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 528 VHQ 530
H
Sbjct: 80 NHI 82
Score = 34.2 bits (78), Expect = 0.025
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCE--------EKFENSESLRTHMNSLH 500
+ C + F + H+ ++H G + ++C + F+ L H+ H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-H 85
Query: 501 ALLFPYSC 508
Sbjct: 86 TGEKSGPS 93
Score = 29.9 bits (67), Expect = 0.72
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 9 SNLNDLMYHCRACVAMPRIHPHKDKFMCYACYY--------STYISTNMKNHIMTHTGSK 60
S +++L+ H H + + CY+ S + NHI HTG K
Sbjct: 36 STMHELVTHVT------MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 61 PYNCS 65
S
Sbjct: 90 SGPSS 94
Score = 28.4 bits (63), Expect = 2.7
Identities = 16/99 (16%), Positives = 23/99 (23%), Gaps = 34/99 (34%)
Query: 385 NYKCNICDCFFKTHSILEDHMKALH----SFPCDKCDYVGGNLSMLTSHQNSHNSQTEVP 440
+ CD F T L H+ H C +
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-------------------- 64
Query: 441 PILSKNKRQCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
C + F+ + HI HTG+K
Sbjct: 65 ---------CPREGKSFKAKYKLVNHI-RVHTGEKSGPS 93
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 470 KHTGDKPYSCYLCEEKFENSESLRTHM 496
TG KP+ C C+ F S+ L H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 32.7 bits (75), Expect = 0.023
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 563 HMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRR 594
+ + QCP C R FSR H++R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 30.8 bits (70), Expect = 0.092
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 52 HIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
TG KP+ C C + S L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 27.3 bits (61), Expect = 1.9
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 677 HQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH 709
R F+C C+ +SR D H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 37.0 bits (87), Expect = 0.002
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 450 CEYCSQLFRRASAVEKH--IALKHTGDKPYSCYLCEEKFENSESLRTHM 496
C+YC + F + S ++KH I HTG+KP+ C +C + F S +L TH
Sbjct: 32 CQYCGKRFHQKSDMKKHTFI---HTGEKPHKCQVCGKAFSQSSNLITHS 77
Score = 34.3 bits (80), Expect = 0.014
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 506 YSCNIC---FRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCSYQTYHKHALD 561
+ C IC F+R+S LS H L +H + Y C C + + K +
Sbjct: 2 FDCKICGKSFKRSS---TLSTHLL-IH-----------SDTRPYPCQYCGKRFHQKSDMK 46
Query: 562 NHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
H +H+ ++ H+C VC + FS+ S+ TH R
Sbjct: 47 KHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 31.2 bits (72), Expect = 0.20
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
++MK H HTG KP+ C C
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVC 63
Score = 29.3 bits (67), Expect = 0.80
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
S+ + H++ H+ ++PY C +C
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYC 35
Score = 26.6 bits (60), Expect = 7.8
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 20/78 (25%)
Query: 477 YSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC---FRRNSKYTHLSRHKLLVHQKQI 533
+ C +C + F+ S +L TH+ +H+ PY C C F + S + +H +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKS---DMKKHT-FIHT--- 53
Query: 534 DGVGSVEIGEK-YSCTQC 550
GEK + C C
Sbjct: 54 --------GEKPHKCQVC 63
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.1 bits (83), Expect = 0.002
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 25 PRIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSHCT 68
+ + C C ++ H ++H+G KPY+ +
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 35.7 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCYLC 482
CE C ++FR + +H L H+G+KPYS
Sbjct: 14 ACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPS 46
Score = 29.5 bits (66), Expect = 0.39
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 470 KHTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNIC 511
K +C +C + F + L H S H+ PYS
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
Score = 26.1 bits (57), Expect = 6.5
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 707 TSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
S + + C C LN H + H+ E +S
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.1 bits (57), Expect = 7.3
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 13/48 (27%)
Query: 505 PYSCNICFRRNSKYTHLSRHKLLVHQKQIDGVGSVEIGEK-YSCTQCS 551
+C IC + HL+RHK L H GEK YS S
Sbjct: 12 QVACEICGKIFRDVYHLNRHK-LSHS-----------GEKPYSSGPSS 47
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG KPY C C + F + SL H H P +
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 31.0 bits (71), Expect = 0.087
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
+C C + F + +++ +H HTG+KP
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 29.5 bits (67), Expect = 0.32
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C C
Sbjct: 2 SSGSSGTGKKPYECIEC 18
Score = 25.6 bits (57), Expect = 7.8
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 562 NHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQRRVH 596
+ + + ++C C + F + + H R H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.4 bits (81), Expect = 0.006
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 673 QLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLN 732
Q+ HL +C KC + + R+ S + +T MC +C S + LN
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRR--------STLSRRKTPMCEKCRKDSCQEAALN 56
Query: 733 THAMVHADE 741
+ +
Sbjct: 57 KDEGNESGK 65
Score = 33.1 bits (75), Expect = 0.034
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHK 525
H GD+ C C F +L C C + + + L++ +
Sbjct: 13 HLGDRSQKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEAALNKDE 59
Score = 28.1 bits (62), Expect = 1.9
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 46 STNMKNHIMTHTGSKPYNCSHC 67
S + H G + CS C
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKC 24
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 34.7 bits (80), Expect = 0.008
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 435 SQTEVPPILSKNKRQ--CEY--CSQLFRRASAVEKHIALKHTGDKPYSC--YLCEEKFEN 488
S + P I S R C + C + + ++S ++ H HTG+KP+SC CE +F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHT-RTHTGEKPFSCSWKGCERRFAR 61
Query: 489 SESLRTHM 496
S+ L H
Sbjct: 62 SDELSRHR 69
Score = 32.4 bits (74), Expect = 0.056
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 26 RIHPHKDKFMCY--ACYYSTYISTNMKNHIMTHTGSKPYNCSH--CTFKGASSQALKYHM 81
+C C + + S+++K H THTG KP++CS C + A S L H
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
Query: 82 HV 83
Sbjct: 70 RT 71
Score = 31.2 bits (71), Expect = 0.16
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 460 ASAVEKHIALKHTGDKPYSCYL--CEEKFENSESLRTHMNSLHALLFPYSCNI--CFRRN 515
S+ + + + + C C + + S L+ H + H P+SC+ C RR
Sbjct: 1 GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRF 59
Query: 516 SKYTHLSRHK 525
++ LSRH+
Sbjct: 60 ARSDELSRHR 69
Score = 29.7 bits (67), Expect = 0.49
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 554 TYHK-HALDNHMPLHSLDRKHQC--PVCLRRFSRQSDNNTHQRR 594
TY K L H H+ ++ C C RRF+R + + H+R
Sbjct: 28 TYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 35.7 bits (81), Expect = 0.009
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 442 ILSKNKRQCEYCSQLFRRA-SAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLH 500
I + + C C+ + R+ ++KH+ + C C ++F++ L H + H
Sbjct: 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Query: 501 A 501
+
Sbjct: 79 S 79
Score = 29.5 bits (65), Expect = 1.1
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 673 QLKLHQRYHLSSNLFRCEKCN-LGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTL 731
Q +H+R C CN + + HM + + C C SK L
Sbjct: 16 QRAIHERGEAV-----CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGL 70
Query: 732 NTHAMV 737
N H M
Sbjct: 71 NYHTMA 76
Score = 28.8 bits (63), Expect = 2.1
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 475 KPYSCYLCEEKFENS-ESLRTHMNSLHALLFPYSCNICFRRNSKYTHLSRHKLLVHQKQI 533
C C + L+ HM L C C ++ L+ H + H +
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Query: 534 DGVGSVEIGE 543
+ E GE
Sbjct: 83 SDAEASEGGE 92
Score = 27.2 bits (59), Expect = 7.7
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 31 KDKFMCYACYYSTYIS-TNMKNHI-MTHTGSKPYNCSHCTFKGASSQALKYHMHVD 84
+ + +C C T + +K H+ + C HC + S L YH +
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAE 77
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 36.1 bits (82), Expect = 0.009
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 200 RKHLQNTVTYSCKKCPFETQFKVTLGDHYKTCHKGISFTCDECHLCFNTFRRFDSHIRAH 259
+K L + + P L F C C + F++ HIR
Sbjct: 39 QKRLIRAIVKTLIHNPQLLDESSYL-YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT 97
Query: 260 EYTEQCELCNEKVIGKNQIYFHYYHEHEG 288
E+T+ C +C ++ + H +H
Sbjct: 98 EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 35.7 bits (81), Expect = 0.015
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 450 CEYCSQLFRRASAVEKHIALKHTGDKPYSCYLCEEKFENSESLRTHMNSLHAL 502
C C F + ++++HI + C +C+++F +++S H+ H +
Sbjct: 77 CPLCLMPFSSSVSLKQHI---RYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 33.8 bits (76), Expect = 0.062
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 533 IDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQ 592
+ + + + ++ C C +L H+ + CPVC + F+ H
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHV 120
Query: 593 RRVHGV 598
+ H +
Sbjct: 121 CKKHNI 126
Score = 29.1 bits (64), Expect = 2.8
Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 4/102 (3%)
Query: 242 CHLCFNTFRRFDSHI----RAHEYTEQCELCNEKVIGKNQIYFHYYHEHEGYDFNCKQCS 297
H+ +R+ R + + N +++ ++ + F C C
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCL 81
Query: 298 FTTKTPKKFIEHKEAGHFTWNCEHCDFSASKKSVLLSHLKQH 339
+ +H T C C + L H+ +
Sbjct: 82 MPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 28.4 bits (62), Expect = 4.4
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 406 KALHSFPCDKCDYVGGNLSMLTSHQNSHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEK 465
KA+ F C C + L H ++ + C C + F +
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYT-----------EHTKVCPVCKKEFTSTDSALD 118
Query: 466 HIALKHTG 473
H+ KH
Sbjct: 119 HVCKKHNI 126
Score = 27.6 bits (60), Expect = 7.3
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 687 FRCEKCNLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHA 735
F C C + +S S + H+ E T +C C +S D+ H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHV 120
Score = 27.6 bits (60), Expect = 8.1
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH 709
C LC + LK H RY + C C ++ DS H+
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKK 123
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.7 bits (78), Expect = 0.010
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHM 496
G+KPY C C +F LR H+
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 31.3 bits (72), Expect = 0.071
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 52 HIMTHTGSKPYNCSHCTFKGASSQALKYHM 81
+ G KPY C C + L+ H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 28.6 bits (65), Expect = 0.66
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYS 478
+CE C F + + + H+ + HTG P S
Sbjct: 13 KCETCGARFVQVAHLRAHVLI-HTGSGPSS 41
Score = 27.9 bits (63), Expect = 1.0
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 46 STNMKNHIMTHTGSKPYN 63
+++ H++ HTGS P +
Sbjct: 24 VAHLRAHVLIHTGSGPSS 41
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 33.8 bits (78), Expect = 0.011
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 470 KHTGDKPYSC--YLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KP++C C +F S+ L H H+ + P +
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGPS 46
Score = 30.0 bits (68), Expect = 0.21
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 51 NHIMTHTGSKPYNCSH--CTFKGASSQALKYHM 81
+ + TG KP+ C+ C ++ + S L H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 28.0 bits (63), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 562 NHMPLHSLDRKHQC--PVCLRRFSRQSDNNTHQRRVHGVLKP 601
+ + ++ C P C RFSR SD + RR H +KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSR-SDELSRHRRSHSGVKP 42
Score = 26.9 bits (60), Expect = 3.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
S + H +H+G KP S
Sbjct: 27 SDELSRHRRSHSGVKPSGPS 46
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.018
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHM 496
TG+KP+ C C F S SL H+
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 31.4 bits (72), Expect = 0.076
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 52 HIMTHTGSKPYNCSHC--TFKGASSQALKYHM 81
+ TG KP+ C C F + S L H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCS--LFKHL 32
Score = 30.6 bits (70), Expect = 0.12
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
S ++ H+ +H + P S
Sbjct: 25 SCSLFKHLRSHERTDPSGPSS 45
Score = 29.9 bits (68), Expect = 0.26
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSCY 480
QC+ C F + ++ KH+ H P
Sbjct: 14 QCKECGMNFSWSCSLFKHLRS-HERTDPSGPS 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.022
Identities = 96/631 (15%), Positives = 161/631 (25%), Gaps = 247/631 (39%)
Query: 54 MTHTGSKPYNCSH----CTFKGASSQALKYHMHVDMLQYLYGASFDRF----PHLSNDDD 105
M ++P SH ++ LQ ++F P +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTAS----FFIASQLQ-------EQFNKILPEPTEGFA 49
Query: 106 DDDDDGDDGD--VKF-----------------DVCNGIINKIENTCSEHNDRIFYANIKR 146
DD+ + KF V N + + EN E ND I
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND------I-- 101
Query: 147 EH-----LDPDDCPKYKMTRESGIK--------LNIKYDMNEAEDLKCKLCNYQAVNIKG 193
H L ++ + + IK +D L ++AV
Sbjct: 102 -HALAAKLLQEN-DTTLVKTKELIKNYITARIMAKRPFDKKSNSAL------FRAVGEGN 153
Query: 194 IRAH-VF--RKHLQ-NTVTYSCKKCPF-ETQFKVTLGDHYKTCHKGISFTCDECHLCFNT 248
+ +F Q NT Y F E + L Y + +
Sbjct: 154 AQLVAIFGG----QGNTDDY------FEELR---DLYQTYHVL---VGDLIKFSAETLSE 197
Query: 249 FRRFDSHIRAHEYTEQCE----------------LCNEKV----IGKNQIYFHYYHEHEG 288
R +T+ L + + IG Q+ HY
Sbjct: 198 LIRTTLDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA-HYV----- 250
Query: 289 YDFNCKQCSFTTKTPKKFIEHKEA--GHF-------------TWNCEHCDF-SASKKSV- 331
K FT P + + + GH +W F + +K++
Sbjct: 251 --VTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAETDSWE----SFFVSVRKAIT 301
Query: 332 LLSHLKQHVTRVTRTQHMTPDEETNEIPIEPDLSPDLQKEELVRETRSMKMYDNYKCNIC 391
+L + R P+ + P + L+ E M +I
Sbjct: 302 VLFFI------GVRCYEAYPNTS-----LPPSI---LEDSLENNEGVPSPML-----SIS 342
Query: 392 DCFFKTHSILEDHMKAL-HSFPCDKCDY-----------VGG--------NLSMLTSHQN 431
+ T ++D++ P K V G NL++ +
Sbjct: 343 NL---TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 432 SHNSQTEVPPILSKNKRQCEYC---------SQLFRRASAV------EKHIALK------ 470
S Q+ +P S+ K + S L AS + + +++
Sbjct: 400 SGLDQSRIP--FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 471 -----HTG-DKPYSCYLCEEKFENSESLR-------------THMNSLHALLF-PYSCNI 510
G D L SE + T + H L F P
Sbjct: 458 PVYDTFDGSD------LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG--- 508
Query: 511 CFRRNSKYTHLSRHKLLVHQKQIDGVGSVEI 541
S +L H + DG G V +
Sbjct: 509 ----------ASGLGVLTH-RNKDGTG-VRV 527
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (75), Expect = 0.026
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
G+K + C C+ F + SLR H N +H P +
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.36
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ G K + C C
Sbjct: 3 SGSSGMGEKTWKCREC 18
Score = 26.7 bits (60), Expect = 3.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
+++++ H H G KP S
Sbjct: 25 ASSLRLHQNVHVGEKPSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.3 bits (74), Expect = 0.029
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G+KPYSC C+E F ++ L H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH 29
Score = 28.8 bits (65), Expect = 0.59
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 55 THTGSKPYNCSHC 67
+G KPY+C+ C
Sbjct: 4 GSSGEKPYSCAEC 16
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 36.5 bits (85), Expect = 0.033
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 600 KPTPLEMQVEKRDQVALRMKPSAFEMQSESQLTCDIC------DRVFQTDKQWKLHMGFH 653
+P E + +++ + + + ++ + TC++C + V +K WK+H+G
Sbjct: 330 RPIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIHLGSR 389
Query: 654 NTKRRLPCKLCGFRLKNHKQLKLHQRYHL 682
K LK + + +++ +
Sbjct: 390 RHKS---------NLKRNTRQADFEKWKI 409
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.1 bits (74), Expect = 0.041
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G+KP+ C CE+ F + L H + HA P +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGPS 42
Score = 27.9 bits (63), Expect = 1.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 55 THTGSKPYNCSHC 67
+G KP+ CS C
Sbjct: 4 GSSGEKPFGCSCC 16
Score = 26.3 bits (59), Expect = 3.8
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
F C C + + + H TH KP S
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 36.4 bits (83), Expect = 0.049
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 534 DGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
+G + + S A P S +QC VC D + H
Sbjct: 142 EGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV- 200
Query: 594 RVHGV 598
HG+
Sbjct: 201 ASHGL 205
Score = 34.4 bits (78), Expect = 0.17
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 15/88 (17%)
Query: 660 PCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDSFEYHMTSH---------- 709
+ + H S + ++C C+ + H+ SH
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTS 213
Query: 710 ---NQKEQTFMCTQ--CDFTSSSKDTLN 732
+ F+ + S D N
Sbjct: 214 SEIQRHITEFISSWQNHPIVQVSADVEN 241
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.064
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG KPY C C + F SL TH +H P +
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.81
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+MC C + + +++ H + HTG KP S
Sbjct: 5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 1.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C+ C
Sbjct: 2 SSGSSGTGVKPYMCNEC 18
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.066
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C +C + F SL H +H P +
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C C
Sbjct: 3 SGSSGTGEKPYKCDVC 18
Score = 27.1 bits (61), Expect = 2.2
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
P+K C C+ S +++ H HTG KP S
Sbjct: 5 SSGTGEKPYK----CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.066
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F ++ S H LH P +
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPS 44
Score = 29.1 bits (66), Expect = 0.48
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C C
Sbjct: 2 SSGSSGTGEKPYKCMEC 18
Score = 27.9 bits (63), Expect = 1.2
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ + C C + +++ H HTG +P S
Sbjct: 5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 31.4 bits (72), Expect = 0.067
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY+C C + F + L H +H+ P +
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPS 44
Score = 29.5 bits (67), Expect = 0.32
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
C+ C + FR AS + KH + H+G+KP
Sbjct: 14 NCKECGKSFRWASCLLKHQRV-HSGEKPSGP 43
Score = 29.5 bits (67), Expect = 0.40
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 52 HIMTHTGSKPYNCSHC--TFKGASS 74
+ TG KPYNC C +F+ AS
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASC 27
Score = 26.8 bits (60), Expect = 3.3
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C S ++ + H H+G KP S
Sbjct: 5 SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.070
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F LR H H +
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGPS 44
Score = 30.2 bits (69), Expect = 0.17
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY CS C
Sbjct: 2 SSGSSGTGEKPYKCSDC 18
Score = 27.9 bits (63), Expect = 1.2
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C S + ++ H HTG + S
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 31.4 bits (72), Expect = 0.081
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG KP+ C C + F +L TH +H +
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPSS 44
Score = 30.2 bits (69), Expect = 0.19
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KP+ C+HC
Sbjct: 2 SSGSSGTGQKPFECTHC 18
Score = 28.3 bits (64), Expect = 0.86
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ F C C S N+ H HTG K S
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.0 bits (71), Expect = 0.085
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ T SK YNC+ C
Sbjct: 3 SGSSGTDSKSYNCNEC 18
Score = 26.8 bits (60), Expect = 2.7
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
T K Y+C C + F L H
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 31.0 bits (71), Expect = 0.088
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHM 496
G+KPY C C + F SL H+
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 29.5 bits (67), Expect = 0.33
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ G KPY C C
Sbjct: 2 SSGSSGGEKPYRCDQC 17
Score = 26.4 bits (59), Expect = 4.6
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYN 63
+ + C C + ++ HI HTGS P +
Sbjct: 4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 25.6 bits (57), Expect = 7.7
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYS 478
+C+ C + F + ++ HI + HTG P S
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRV-HTGSGPSS 41
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.089
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
G K + C C++ F S SL H +H P +
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.93
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ G K + C+ C
Sbjct: 3 SGSSGAGKKLFKCNEC 18
Score = 26.3 bits (59), Expect = 4.2
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
K F C C + S+++ H HTG KP S
Sbjct: 5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.093
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C +C + F + +SL H +H+ P +
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQ-RIHSGKKPSGPS 44
Score = 29.4 bits (67), Expect = 0.37
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY CS C
Sbjct: 3 SGSSGTGEKPYECSVC 18
Score = 28.6 bits (65), Expect = 0.79
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++ H H+G KP S
Sbjct: 25 RQSLSVHQRIHSGKKPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.096
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F SL H + H+ P +
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQ-ATHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.56
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
Score = 27.1 bits (61), Expect = 2.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
+++ H TH+G KP S
Sbjct: 25 RSSLAIHQATHSGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 30.9 bits (71), Expect = 0.098
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+KP+ C C + F S L TH
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATH 31
Score = 29.4 bits (67), Expect = 0.34
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ F C C S IS+ + H HTG KP S
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.51
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KP+ C+ C
Sbjct: 3 SGSSGTGEKPFECAEC 18
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
+C C + F +S + H + HTG+KP
Sbjct: 14 ECAECGKSFSISSQLATHQRI-HTGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 31.0 bits (71), Expect = 0.098
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
G PY C CE+ F L H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 30.2 bits (69), Expect = 0.21
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ G PY CS C
Sbjct: 3 SGSSGAGVNPYKCSQC 18
Score = 26.0 bits (58), Expect = 5.6
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
+ H HT KP S
Sbjct: 25 KLRLLVHQRMHTREKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.10
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F ++ L H +H P +
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ + C C ++ + H HTG KP S
Sbjct: 5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.10
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F SL TH ++H P +
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQ-AIHTGKKPSGPS 44
Score = 28.3 bits (64), Expect = 1.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
+++ H HTG KP S
Sbjct: 25 RSSLTTHQAIHTGKKPSGPSS 45
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYECNQC 18
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+KPY C C + F L H
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 30.6 bits (70), Expect = 0.12
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY CS C
Sbjct: 2 SSGSSGTGEKPYKCSDC 18
Score = 28.2 bits (64), Expect = 1.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
+ + H +HTG + S
Sbjct: 25 KSGLHIHQQSHTGERHSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.0 bits (71), Expect = 0.11
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG +PY C C + F+ SL H S H P +
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.45
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG +PY C C
Sbjct: 3 SGSSGTGQRPYECIEC 18
Score = 27.1 bits (61), Expect = 2.7
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C + +++ H +HTG KP S
Sbjct: 5 SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ + C C + +N+ H HTG KP S
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.15
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+KPY C C + F + +L TH
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 29.0 bits (66), Expect = 0.48
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYRCAEC 18
Score = 27.1 bits (61), Expect = 2.8
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 449 QCEYCSQLFRRASAVEKH--IALKHTGDKPYSC 479
+C C + F S + H I HTG+KP
Sbjct: 14 RCAECGKAFTDRSNLFTHQKI---HTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.11
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C +C + F L H +H P +
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVH-QQIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.38
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY CS C
Sbjct: 3 SGSSGTGEKPYECSIC 18
Score = 28.7 bits (65), Expect = 0.77
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
+ + H HTG KP S
Sbjct: 25 KSQLHVHQQIHTGEKPSGPSS 45
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.12
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KP+ C C + F + L H +H P +
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPS 44
Score = 28.3 bits (64), Expect = 0.80
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ C C S ++ + H HTG P S
Sbjct: 5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 27.9 bits (63), Expect = 1.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KP+ C C
Sbjct: 3 SGSSGTGEKPHECREC 18
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.12
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
G+K Y C +C ++F S L+TH +H P +
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.3
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ G K Y C C
Sbjct: 3 SGSSGMGEKCYKCDVC 18
Score = 27.5 bits (62), Expect = 2.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
S++++ H HTG KP S
Sbjct: 25 SSHLQTHQRVHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.13
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C +C + F + SL H +H+ P +
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.54
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C C
Sbjct: 3 SGSSGTGEKPYECDVC 18
Score = 27.9 bits (63), Expect = 1.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++ H H+G KP S
Sbjct: 25 HASLTQHQRVHSGEKPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 30.6 bits (70), Expect = 0.13
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+KP+ C C + F +L H
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVH 31
Score = 29.8 bits (68), Expect = 0.23
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ F C C + + H HTG KP S
Sbjct: 5 SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.62
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KP+ C C
Sbjct: 2 SSGSSGTGEKPFKCVEC 18
Score = 27.1 bits (61), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
+C C + F R SA+ H L HTG+KP
Sbjct: 14 KCVECGKGFSRRSALNVHHKL-HTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.13
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F L TH +H P +
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHH-MVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.45
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C C
Sbjct: 2 SSGSSGTGEKPYKCEEC 18
Score = 28.3 bits (64), Expect = 0.89
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C ++ H M HTG KP S
Sbjct: 5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.14
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY+C C + F + L+ H +H P +
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.70
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPYNC C
Sbjct: 3 SGSSGTGEKPYNCEEC 18
Score = 26.7 bits (60), Expect = 3.8
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 26 RIH----PHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
P+ C C + + ++ H HTG KP S
Sbjct: 5 SSGTGEKPYN----CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.14
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG++PY C +C + F + +L H +H P +
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.47
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG +PY C+ C
Sbjct: 3 SGSSGTGERPYICTVC 18
Score = 29.0 bits (66), Expect = 0.47
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ ++C C + +N+ H HTG KP S
Sbjct: 5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 30.6 bits (70), Expect = 0.14
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG KPY C C + F L H H + P +
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGPS 44
Score = 29.4 bits (67), Expect = 0.38
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY CS C
Sbjct: 2 SSGSSGTGVKPYGCSQC 18
Score = 27.5 bits (62), Expect = 1.8
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ C C + + + + H +HTG KP S
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+K Y+C C + F + L H LH+ P +
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.18
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG K YNC C
Sbjct: 2 SSGSSGTGEKLYNCKEC 18
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C S + + H H+G KP S
Sbjct: 5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.1 bits (69), Expect = 0.16
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+KPY C C++ F +L H
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVH 31
Score = 29.4 bits (67), Expect = 0.37
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYECNEC 18
Score = 25.9 bits (58), Expect = 7.2
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 450 CEYCSQLFRRASAVEKH--IALKHTGDKPYSC 479
C C + F S + H HTG+ S
Sbjct: 15 CNECQKAFNTKSNLMVHQRT---HTGESGPSS 43
Score = 25.5 bits (57), Expect = 9.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 46 STNMKNHIMTHTGSKPYNC 64
+N+ H THTG +
Sbjct: 25 KSNLMVHQRTHTGESGPSS 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.17
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C +C + F S L H S+H+ P +
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGPS 44
Score = 28.6 bits (65), Expect = 0.64
Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
+C+ C + FR +S + +H ++ H+G++P
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSV-HSGERPSGP 43
Score = 27.5 bits (62), Expect = 1.9
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C C
Sbjct: 3 SGSSGTGEKPYKCQVC 18
Score = 25.9 bits (58), Expect = 7.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
S+++ H H+G +P S
Sbjct: 25 SSHLVQHHSVHSGERPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.18
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F +L TH +H P +
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.74
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C + +N+ H + HTG KP S
Sbjct: 5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.18
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG KPY C C + F + L H +H P +
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++ + H HTG KP S
Sbjct: 25 TSKLARHQRVHTGEKPSGPSS 45
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGGKPYQCNEC 18
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.18
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
G+KPY C C + F S L H H P +
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPS 44
Score = 28.3 bits (64), Expect = 0.80
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ G KPY CS C
Sbjct: 3 SGSSGEGEKPYQCSEC 18
Score = 27.1 bits (61), Expect = 2.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
S + H +THT KP S
Sbjct: 25 SYRLTQHWITHTREKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.18
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F + L H +H P +
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.93
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 28.3 bits (64), Expect = 0.99
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++ + H HTG KP S
Sbjct: 25 TSKLARHQRIHTGEKPSGPSS 45
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.1 bits (69), Expect = 0.19
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KP+ CS C
Sbjct: 2 SSGSSGTGEKPFECSEC 18
Score = 29.8 bits (68), Expect = 0.23
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+KP+ C C++ F +L H
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVH 31
Score = 28.2 bits (64), Expect = 1.1
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ F C C + +N+ H THTG KP S
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.19
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + + + +L H +H P +
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGPS 44
Score = 28.3 bits (64), Expect = 0.80
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C C
Sbjct: 3 SGSSGTGEKPYKCEKC 18
Score = 28.3 bits (64), Expect = 1.0
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
N+ H HTG +P S
Sbjct: 25 KFNLDMHQKVHTGERPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.19
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G+KPY C C + F S L H +H P +
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQ-RIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.67
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ +G KPY C +C
Sbjct: 3 SGSSGSGEKPYVCDYC 18
Score = 28.6 bits (65), Expect = 0.69
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
C+YC + F ++ + +H + HTG+KP
Sbjct: 14 VCDYCGKAFGLSAELVRHQRI-HTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.1
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ ++C C + +S + H HTG KP S
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.19
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F +L H +H P +
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.44
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ + C C + N+ H HTG KP S
Sbjct: 5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.66
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C C
Sbjct: 2 SSGSSGTGEKPYRCGEC 18
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.21
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C+ C
Sbjct: 2 SSGSSGTGEKPYICAEC 18
Score = 29.4 bits (67), Expect = 0.39
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ ++C C + I +N+ H HT KP S
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.62
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F +L H +H P +
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQ-KIHTKQKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.21
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KP+ C +C + F L H +H P +
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHS-MVHTAEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.45
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KP+ C C
Sbjct: 2 SSGSSGTGEKPFKCDIC 18
Score = 28.6 bits (65), Expect = 0.59
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ F C C S + + H M HT KP S
Sbjct: 5 SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.22
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G+KP+ C C + F + +H
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 29.1 bits (66), Expect = 0.51
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + +G KP+ C C
Sbjct: 2 SSGSSGSGEKPFKCEEC 18
Score = 28.3 bits (64), Expect = 0.89
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ F C C Y ++ +H +H+G KP S
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.23
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G+KPY C C + F + L H +H P +
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.98
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + +G KPY C+ C
Sbjct: 2 SSGSSGSGEKPYKCNEC 18
Score = 26.7 bits (60), Expect = 3.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++++ NH HTG KP S
Sbjct: 25 NSHLTNHWRIHTGEKPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 29.8 bits (68), Expect = 0.23
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+K Y C C + F + L H +H P +
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.5
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG K Y C+ C
Sbjct: 3 SGSSGTGEKRYKCNEC 18
Score = 27.1 bits (61), Expect = 2.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++ + H HTG KP S
Sbjct: 25 NSQLSQHQKIHTGEKPSGPSS 45
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 29.9 bits (68), Expect = 0.23
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHM 496
G+ PY C C + F SL H
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 26.9 bits (60), Expect = 2.4
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 55 THTGSKPYNCSHC--TFKGASSQALKYHM 81
+ G PY C C +F S L H
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGS--LAVHQ 31
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 29.7 bits (67), Expect = 0.25
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 475 KPYSCYLCEEKFENSESLRTHMNS 498
+ Y+C C+ +F ++++L HMN
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNV 28
Score = 25.5 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 59 SKPYNCSHCTFKGASSQALKYHM 81
+ Y CS C + S+QAL HM
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHM 26
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.26
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + G KPY CS C
Sbjct: 2 SSGSSGAGEKPYGCSEC 18
Score = 29.4 bits (67), Expect = 0.38
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
G+KPY C C + F + L H
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 28.3 bits (64), Expect = 0.95
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C + + + H+ TH+G KP S
Sbjct: 5 SSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.26
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C+ C + F + L H +H P +
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPS 44
Score = 27.4 bits (62), Expect = 1.9
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C C
Sbjct: 3 SGSSGTGEKPYKCHEC 18
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.26
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KP C+ C
Sbjct: 3 SGSSGTGEKPCKCTEC 18
Score = 29.4 bits (67), Expect = 0.32
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KP C C + F L H + H +
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGPS 44
Score = 26.0 bits (58), Expect = 5.5
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
+ + H TH K S
Sbjct: 25 KSQLIMHQRTHVDDKHSGPS 44
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.27
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 542 GEKYSCTQCSYQTYHKHALDNHMPLHSLDR 571
G+ Y C QCSY + K L+ H+ H+ ++
Sbjct: 7 GKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.5 bits (60), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 34 FMCYACYYSTYISTNMKNHIMTHTGSK 60
+ C C Y++ I N+ H+ HTG K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.3 bits (57), Expect = 3.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 708 SHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADE 741
S + + C QC + S+ K LN H H E
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.9 bits (68), Expect = 0.27
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G+K ++C C + F +LR H
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIH 31
Score = 27.6 bits (62), Expect = 1.7
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 52 HIMTHTGSKPYNCSHC--TFKGASSQALKYHMHVDMLQYLYGAS 93
+ +G K + C C F S+ L+ H V M + G S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISA--LRIHQRVHMGEKCSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.27
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG P+ CS C
Sbjct: 2 SSGSSGTGENPFICSEC 18
Score = 29.4 bits (67), Expect = 0.34
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+ P+ C C + F + +L H +H P +
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIH-QKIHTGERPSGPS 44
Score = 28.2 bits (64), Expect = 0.96
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
++ F+C C TN+ H HTG +P S
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.28
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G+KP+ C C ++F + L +H +H P +
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.89
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ +G KP+ C C
Sbjct: 3 SGSSGSGEKPFQCEEC 18
Score = 27.1 bits (61), Expect = 2.1
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ F C C ++++ +H HTG KP S
Sbjct: 5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.28
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G+KPY C C + F L H H P +
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.47
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ +G KPY C+ C
Sbjct: 3 SGSSGSGEKPYGCNEC 18
Score = 27.1 bits (61), Expect = 2.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
+ + H THTG KP S
Sbjct: 25 KSILSAHQRTHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.29
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG KPY C C + F + L H
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 29.0 bits (66), Expect = 0.55
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C+ C
Sbjct: 2 SSGSSGTGMKPYVCNEC 18
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
C C + FR S + H HTG+ S
Sbjct: 14 VCNECGKAFRSKSYLIIHTRT-HTGESGPSS 43
Score = 25.5 bits (57), Expect = 9.8
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 46 STNMKNHIMTHTGSKPYNC 64
+ + H THTG +
Sbjct: 25 KSYLIIHTRTHTGESGPSS 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.29
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G+KP+ C C ++F + L +H
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 28.6 bits (65), Expect = 0.78
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + +G KP+ C C
Sbjct: 2 SSGSSGSGEKPFKCEEC 18
Score = 26.7 bits (60), Expect = 3.1
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ F C C ++ + +H HTG KP S
Sbjct: 5 SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.30
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+KPY C C + F L H
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 29.4 bits (67), Expect = 0.37
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ + C C S + + H HTG P S
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 29.4 bits (67), Expect = 0.41
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY CS C
Sbjct: 3 SGSSGTGEKPYECSDC 18
Score = 26.3 bits (59), Expect = 5.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 449 QCEYCSQLFRRASAVEKH--IALKHTGDKPYSC 479
+C C + F + S + H I HTG+ P
Sbjct: 14 ECSDCGKSFIKKSQLHVHQRI---HTGENPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 29.4 bits (67), Expect = 0.31
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + +G KPY C+ C
Sbjct: 2 SSGSSGSGEKPYECNEC 18
Score = 29.4 bits (67), Expect = 0.34
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G+KPY C C + F L H
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.32
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + + KPY C C
Sbjct: 2 SSGSSGSVEKPYKCEDC 18
Score = 29.0 bits (66), Expect = 0.48
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+ +KPY C C + + +L H
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 27.5 bits (62), Expect = 1.8
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C N+ H H G K S
Sbjct: 5 SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.34
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG K + C+ C
Sbjct: 2 SSGSSGTGGKHFECTEC 18
Score = 29.4 bits (67), Expect = 0.40
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG K + C C + F +L H +H P +
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQ-KIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 2.4
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
F C C + + + H HTG KP S
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (67), Expect = 0.34
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + G + + CS C
Sbjct: 2 SSGSSGHGERGHRCSDC 18
Score = 29.4 bits (67), Expect = 0.38
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
G++ + C C + F + + H
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQH 31
Score = 27.5 bits (62), Expect = 1.9
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 449 QCEYCSQLFRRASAVEKHIALKHTGDKPYSC 479
+C C + F +AS +H + HTG+KP
Sbjct: 14 RCSDCGKFFLQASNFIQHRRI-HTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ C C ++N H HTG KP S
Sbjct: 5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.36
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG++ Y C C + F +L H +H P +
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQ-RIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.47
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG + Y CS C
Sbjct: 3 SGSSGTGERHYECSEC 18
Score = 27.8 bits (63), Expect = 1.5
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ + C C + + + H HTG KP S
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.36
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHM 496
TG+KPYSC +C + F S L H+
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 29.0 bits (66), Expect = 0.55
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY+C+ C
Sbjct: 2 SSGSSGTGEKPYSCNVC 18
Score = 27.9 bits (63), Expect = 1.5
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
S ++ H+ HT S
Sbjct: 25 SAHLNQHLRVHTQETLSGPSS 45
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.37
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG + Y CS C
Sbjct: 3 SGSSGTGERHYECSEC 18
Score = 29.4 bits (67), Expect = 0.40
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG++ Y C C + F +L H +H P +
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMH-QRIHRGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
+ + H H G KP S
Sbjct: 25 KSTLSMHQRIHRGEKPSGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.40
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G+KPY C C + ++ L H
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 29.0 bits (66), Expect = 0.45
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + +G KPY C C
Sbjct: 2 SSGSSGSGEKPYKCVEC 18
Score = 27.1 bits (61), Expect = 2.3
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ + C C ++ H HTG K S
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.42
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C C
Sbjct: 3 SGSSGTGEKPYECKVC 18
Score = 29.0 bits (66), Expect = 0.44
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C +C + F L H H P +
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 3.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
++ H THTG KP S
Sbjct: 25 KAHLAQHQKTHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.42
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG++P+ C C + F S L H +H P +
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.97
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG +P+ C+ C
Sbjct: 2 SSGSSGTGERPHKCNEC 18
Score = 27.1 bits (61), Expect = 2.1
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ C C S S ++ H HTG KP S
Sbjct: 5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.42
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F + L H +H + P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPS 44
Score = 27.9 bits (63), Expect = 1.3
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
Score = 25.9 bits (58), Expect = 6.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
++++ NH HTG KP S
Sbjct: 25 NSHLANHQRIHTGVKPSGPS 44
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 28.8 bits (65), Expect = 0.43
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 571 RKHQCPVCLRRFSRQSDNNTHQR 593
R C VC R F+RQ H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.43
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+ PY C+ C + F L +H HA P +
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISH-QRTHAGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.44
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
++ + C+ C + + +H TH G KP S
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 28.2 bits (64), Expect = 1.0
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG PY C C
Sbjct: 3 SGSSGTGENPYECHEC 18
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.44
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ +G KPY C C
Sbjct: 3 SGSSGSGKKPYECKEC 18
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G KPY C C + F L H
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQH 31
Score = 25.6 bits (57), Expect = 9.4
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
++ H HTG + S
Sbjct: 25 IGHLNQHKRVHTGERSSGPS 44
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 0.46
Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 159 MTRESGIKLNIKYDMNEAEDLKCKLCNYQAVNIKGIRAHVFRKHLQNTVTYSCKKC 214
MTRES K + N L C C I V R + V C C
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKI------VERFSEGDVV---CALC 48
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.50
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G+KP+ C C + F + L +H+ +H P +
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.88
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ +G KP+ C C
Sbjct: 3 SGSSGSGEKPFKCKEC 18
Score = 25.9 bits (58), Expect = 6.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
+ ++ +H+ HTG KP S
Sbjct: 25 NIHLASHLRIHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 29.0 bits (66), Expect = 0.51
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F + L H +H P +
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 1.0
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C C
Sbjct: 3 SGSSGTGEKPYECKEC 18
Score = 27.5 bits (62), Expect = 1.6
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ + C C + +T++ H HTG KP S
Sbjct: 5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.52
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG KPY C C + F + L H +H P +
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.8
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGKKPYKCNEC 18
Score = 27.5 bits (62), Expect = 2.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++++ H HTG KP S
Sbjct: 25 NSHLARHRGIHTGEKPSGPSS 45
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 28.7 bits (65), Expect = 0.53
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G + Y C C + F SL H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH 29
Score = 27.2 bits (61), Expect = 2.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 449 QCEYCSQLFRRASAVEKH--IALKHTGDKPYS 478
+C+ C + FR+ ++ H I HTG P S
Sbjct: 12 ECQECGKSFRQKGSLTLHERI---HTGSGPSS 40
Score = 27.2 bits (61), Expect = 2.4
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 55 THTGSKPYNCSHC 67
+G + Y C C
Sbjct: 4 GSSGQRVYECQEC 16
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.53
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G++P+ C C + F L H+ LH+ +
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPS 44
Score = 27.9 bits (63), Expect = 1.3
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ +G +P+ C+ C
Sbjct: 3 SGSSGSGERPFKCNEC 18
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.0 bits (66), Expect = 0.53
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG PY C C
Sbjct: 3 SGSSGTGENPYECCEC 18
Score = 28.2 bits (64), Expect = 0.79
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+ PY C C + F + L +H
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSH 31
Score = 26.3 bits (59), Expect = 4.9
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 450 CEYCSQLFRRASAVEKH--IALKHTGDKPYSC 479
C C ++F R + H H+G S
Sbjct: 15 CCECGKVFSRKDQLVSHQKT---HSGQSGPSS 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.1 bits (66), Expect = 0.55
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + + +K + C C
Sbjct: 2 SSGSSGSSTKSHQCHEC 18
Score = 28.3 bits (64), Expect = 0.93
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+ K + C+ C F L H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 26.4 bits (59), Expect = 5.0
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 449 QCEYCSQLFRRASAVEKH--IALKHTGDKPYSC 479
QC C + F S + +H I HTG+KP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRI---HTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 562 NHMPLHSLDRKHQCPVCLRRFSRQSDNNTHQR 593
+ S + HQC C R F+ +S N HQR
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.55
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G+KPY C C + F L H +H P +
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPS 44
Score = 28.2 bits (64), Expect = 0.96
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ +G KPY CS C
Sbjct: 3 SGSSGSGEKPYKCSEC 18
Score = 26.3 bits (59), Expect = 5.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
T++ H HTG +P S
Sbjct: 25 HTHLNEHRRIHTGYRPSGPS 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.57
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 16/40 (40%)
Query: 125 INKIENTCSEHNDRIFYANIKREHLDPDDCPKY--KMTRE 162
+ K++ + YA D P K T E
Sbjct: 22 LKKLQASLK------LYA--------DDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 1.1
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 369 QKEELVRETRSMKMY--DN 385
+K+ L + S+K+Y D+
Sbjct: 18 EKQALKKLQASLKLYADDS 36
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.58
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
TG+KP+ C C + F + L H
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 28.6 bits (65), Expect = 0.60
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ F C C + + H HTG KP S
Sbjct: 5 SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.72
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KP++C C
Sbjct: 3 SGSSGTGEKPFDCIDC 18
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.9 bits (74), Expect = 0.58
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 572 KHQCPVCLRRFSRQSDNNTHQRRVHGV 598
+ C VC RFS S + H R H
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDHRD 142
Score = 31.3 bits (70), Expect = 1.5
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 432 SHNSQTEVPPILSKNKRQCEYCSQLFRRASAVEKHIALKH 471
S +V PI++ + C C+ F SA+ +H+ H
Sbjct: 101 SDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.59
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F + L H +H P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPS 44
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++++ H HTG KP S
Sbjct: 25 NSHLARHRRVHTGGKPSGPSS 45
Score = 27.5 bits (62), Expect = 1.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.62
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KP+ C C + + L H +H P +
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.83
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCSH 66
+ F C C S ++ H HTG KP S
Sbjct: 5 SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 27.5 bits (62), Expect = 1.7
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KP+ C C
Sbjct: 3 SGSSGTGEKPFKCGEC 18
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.63
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYICNEC 18
Score = 28.6 bits (65), Expect = 0.68
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F L H +H P +
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 2.4
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 26 RIHPHKDKFMCYACYYSTYISTNMKNHIMTHTGSKPYNCS 65
+ ++C C S +++ H HTG KP S
Sbjct: 5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 31.9 bits (71), Expect = 0.73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 444 SKNKRQCEYCSQLFRRASAVEKHIALKHT 472
K + C++LF A V KH+ LKHT
Sbjct: 303 WKYGCGAKGCTKLFHAAEFVYKHLKLKHT 331
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 28.2 bits (64), Expect = 0.74
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
+G+ PY C C + F + L +H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISH 29
Score = 28.2 bits (64), Expect = 0.80
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 55 THTGSKPYNCSHC 67
+G PY CS C
Sbjct: 4 GSSGENPYECSEC 16
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 28.2 bits (62), Expect = 0.76
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 472 TGDKPYSCYLCEEKFENSESLRTHMNSLHA 501
+G Y C LC +KF +S LR+H+ +H
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHG 32
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.80
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F + L H +H P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 1.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + TG KPY C+ C
Sbjct: 2 SSGSSGTGEKPYKCNEC 18
Score = 27.4 bits (62), Expect = 2.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++++ H HTG KP S
Sbjct: 25 NSHLVRHRGIHTGEKPSGPSS 45
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.83
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
TG+KPY C C + F + L H +H P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ TG KPY C+ C
Sbjct: 3 SGSSGTGEKPYKCNEC 18
Score = 27.5 bits (62), Expect = 1.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 STNMKNHIMTHTGSKPYNCSH 66
++++ H HTG KP S
Sbjct: 25 NSHLARHRGIHTGEKPSGPSS 45
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase,
deubiquitinase, cell cycle, hydrolase; 1.55A
{Saccharomyces cerevisiae} PDB: 3c0r_A
Length = 212
Score = 31.1 bits (70), Expect = 0.89
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 316 TWNCEHCDFSASKKSVLLSHLKQHVTRVTRTQHMTPDEETNEIPIEPDLSPDLQKEELVR 375
E + +L+ H +T + T N+ E D +L
Sbjct: 110 AVKIEKFNEDKFDNYILILFNGIHYDSLTMNEFKTV---FNKNQPESDDV-LTAALQLAS 165
Query: 376 ETRSMKMYDN-----YKCNICDCFFKTHSILEDHMKA 407
+ N KCN C F + H ++
Sbjct: 166 NLKQTGYSFNTHKAQIKCNTCQMTFVGEREVARHAES 202
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (63), Expect = 1.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTH 495
G+ P+ C C+ F L H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 26.0 bits (57), Expect = 5.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 51 NHIMTHTGSKPYNCSHC 67
+ + G P+ CS C
Sbjct: 2 SSGSSGAGENPFKCSKC 18
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.3 bits (62), Expect = 1.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 567 HSLDRKHQCPVCLRRFSRQSDNNTHQRRVHGVLKPTP 603
S ++ + CPVC RF R+ + H R G + +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG 41
Score = 28.0 bits (61), Expect = 1.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNS 498
+G+KPYSC +C +F+ + + H+ S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRS 32
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMNSLHALLFPYSCN 509
+G++PY C C + F L H+ H +
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGPS 44
Score = 27.5 bits (62), Expect = 1.6
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 52 HIMTHTGSKPYNCSHC 67
+ +G +PY C+ C
Sbjct: 3 SGSSGSGERPYGCNEC 18
Score = 26.7 bits (60), Expect = 3.6
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 46 STNMKNHIMTHTGSKPYNCS 65
+++ H+ H K S
Sbjct: 25 HSHLIEHLKRHFREKSSGPS 44
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 1.9
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 687 FRCEKCN-LGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAM 736
C C +G + + HM + Q + F C C S + H M
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQ--EMFTCHHCGKQLRSLAGMKYHVM 83
Score = 26.8 bits (58), Expect = 9.9
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 643 DKQWKLHMGFHNTKRRLPCKLCG-FRLKNHKQLKLHQRYHLSSNLFRCEKCNLGYSRKDS 701
++QW L + K + C C K + LK H +F C C
Sbjct: 22 EEQWYLEI---VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAG 77
Query: 702 FEYH-MTSHNQK 712
+YH M +HN
Sbjct: 78 MKYHVMANHNSL 89
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.4 bits (58), Expect = 3.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 475 KPYSCYLCEEKFENSESLRTHMNSLHA 501
K Y+C LC F + L H +H+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 26.0 bits (57), Expect = 4.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 574 QCPVCLRRFSRQSDNNTHQRRVHG 597
C +C R F+R+ H +++H
Sbjct: 4 ACGLCNRAFTRRDLLIRHAQKIHS 27
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 29.5 bits (67), Expect = 4.3
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 579 LRRFS-RQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQSESQL 631
L+ F N + LKP ++ + + + L PS QS ++
Sbjct: 418 LKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKK-IPLGGIPSPSTEQSAKKV 470
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 29.3 bits (63), Expect = 4.4
Identities = 38/298 (12%), Positives = 74/298 (24%), Gaps = 38/298 (12%)
Query: 470 KHTGDKPYSCYLC-EEKFENSESLRTHMNSLHALLFPYSC------------NICFRRNS 516
H +C +C F+ + R M + +C + C R +S
Sbjct: 22 IHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVRCHS 81
Query: 517 KYTHLSRHKLLVHQKQIDGVGSVEIGEKYSCTQCSYQTYHKHALDNHMPLHSLDRKHQCP 576
+++ + + + C C ++ + +++ C
Sbjct: 82 GSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGG--RNVTMAQMEKGKSCG 139
Query: 577 VCLRRFSRQSDNNTHQRRVHGVLKPTPLEMQVEKRDQVALRMKPSAFEMQSESQLTCDIC 636
C + + G+ P + +++ A + C+ C
Sbjct: 140 ACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHL------GMYKCNEC 193
Query: 637 DRVFQTDKQWKLHMGFHNTKRRLPCKLCGFRLKNHKQLKLHQRYHLSSNLFRCEKC---- 692
K + + C C H S+ C KC
Sbjct: 194 HTKLFAYKAGAKRFTMADMDKGKSCGAC------------HNGKDAFSSASDCGKCHPGL 241
Query: 693 -NLGYSRKDSFEYHMTSHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADELKFSCQNC 749
+ K S H+ F C C + A + E SC C
Sbjct: 242 KPAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVC 299
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.5 bits (66), Expect = 4.8
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 102 NDDDDDDDDGDDGDVKFDVCNGIIN 126
D D D DGD D C + N
Sbjct: 221 ACDSDQDQDGDGHQDSRDNCPTVPN 245
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 7.0
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 708 SHNQKEQTFMCTQCDFTSSSKDTLNTHAMVHADE 741
S + F C+ C++ + SK L H H+ E
Sbjct: 2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 25.6 bits (55), Expect = 7.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 57 TGSKPYNCSHCTFKGASSQALKYHMH 82
+ KP+ CS C + S LK HM+
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMN 30
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 27.6 bits (60), Expect = 7.4
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 178 DLKCKLCNYQAVNIKGIRAHVF-RKHLQNTVTYSCKKCPFETQFKVTLGDHYKTCHKGI- 235
D +CK+C+ ++ AH RKH Y ++ G
Sbjct: 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGED 91
Query: 236 -SFTCDECHLCFNTFRRFDSHIRAHEYTEQCEL 267
S C C++ F++ +SH + + L
Sbjct: 92 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRL 124
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.8 bits (59), Expect = 8.1
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 264 QCELCNEKVIGKNQIYFHYYHEHEGYDFNCKQCSFT 299
C C E + K Q+ H + +C C
Sbjct: 12 TCNACGE-SVKKIQVEKHVSNCRNCECLSCIDCGKD 46
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.9 bits (56), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 474 DKPYSCYLCEEKFENSESLRTHMNSLH 500
DKPY+C +C ++++N L H H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 9.6
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 471 HTGDKPYSCYLCEEKFENSESLRTHMN 497
G+K E+ +N E LR ++
Sbjct: 203 ARGEKRLQREKSEQVLDNPEDLRGPIH 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.432
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,527,097
Number of extensions: 676188
Number of successful extensions: 4035
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 921
Length of query: 771
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 670
Effective length of database: 3,881,772
Effective search space: 2600787240
Effective search space used: 2600787240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.7 bits)