Query psy13093
Match_columns 111
No_of_seqs 135 out of 1112
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:22:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0092|consensus 100.0 6.2E-37 1.3E-41 195.4 8.6 111 1-111 15-156 (200)
2 KOG0084|consensus 100.0 6.3E-37 1.4E-41 196.0 8.1 110 1-110 19-160 (205)
3 KOG0094|consensus 100.0 3E-36 6.4E-41 192.8 8.6 111 1-111 32-174 (221)
4 KOG0080|consensus 100.0 9E-35 1.9E-39 181.4 7.2 110 1-110 21-162 (209)
5 KOG0098|consensus 100.0 1.5E-34 3.2E-39 183.9 6.1 110 1-110 16-156 (216)
6 KOG0078|consensus 100.0 4.3E-34 9.3E-39 184.8 7.9 110 1-110 22-162 (207)
7 KOG0394|consensus 100.0 1.5E-33 3.2E-38 179.0 6.3 110 1-110 19-166 (210)
8 KOG0079|consensus 100.0 4.1E-33 8.8E-38 172.0 5.8 111 1-111 18-158 (198)
9 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.6E-31 1.6E-35 169.9 9.7 110 1-110 15-168 (182)
10 cd04133 Rop_like Rop subfamily 100.0 1.2E-30 2.5E-35 168.3 10.4 111 1-111 11-162 (176)
11 cd04120 Rab12 Rab12 subfamily. 100.0 1.6E-30 3.5E-35 170.8 9.3 110 1-110 10-151 (202)
12 KOG0095|consensus 100.0 2.8E-31 6E-36 164.4 5.0 110 1-110 17-157 (213)
13 KOG0093|consensus 100.0 3.5E-31 7.7E-36 163.2 5.2 111 1-111 31-172 (193)
14 cd01875 RhoG RhoG subfamily. 100.0 3.7E-30 7.9E-35 167.6 10.1 111 1-111 13-166 (191)
15 KOG0086|consensus 100.0 7.1E-31 1.5E-35 163.0 6.0 111 1-111 19-160 (214)
16 KOG0087|consensus 100.0 2.1E-30 4.5E-35 167.6 8.1 111 1-111 24-165 (222)
17 cd04131 Rnd Rnd subfamily. Th 100.0 8.3E-30 1.8E-34 164.5 10.3 110 1-110 11-164 (178)
18 KOG0097|consensus 100.0 1.1E-30 2.5E-35 160.6 5.7 111 1-111 21-162 (215)
19 KOG0081|consensus 100.0 8.6E-32 1.9E-36 168.0 -0.0 111 1-111 19-170 (219)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.9E-30 1.7E-34 170.5 9.0 110 1-110 23-176 (232)
21 cd04121 Rab40 Rab40 subfamily. 100.0 1.2E-29 2.6E-34 165.2 8.8 111 1-111 16-156 (189)
22 KOG0083|consensus 100.0 1.6E-31 3.5E-36 162.7 -0.6 110 1-110 7-148 (192)
23 cd01874 Cdc42 Cdc42 subfamily. 100.0 5.9E-29 1.3E-33 160.0 10.5 111 1-111 11-164 (175)
24 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.1E-29 1.3E-33 165.3 8.9 110 1-110 11-164 (222)
25 smart00176 RAN Ran (Ras-relate 100.0 1.4E-28 2.9E-33 161.5 9.3 111 1-111 5-143 (200)
26 KOG0091|consensus 100.0 9.5E-30 2E-34 159.3 3.3 110 2-111 19-162 (213)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.9E-28 1.1E-32 155.3 9.1 110 1-110 12-152 (172)
28 cd01871 Rac1_like Rac1-like su 100.0 9E-28 1.9E-32 154.4 10.0 111 1-111 11-164 (174)
29 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.1E-27 2.5E-32 155.0 9.7 111 1-111 10-155 (182)
30 cd04134 Rho3 Rho3 subfamily. 99.9 5.1E-27 1.1E-31 152.5 10.7 110 1-110 10-162 (189)
31 cd04122 Rab14 Rab14 subfamily. 99.9 4.4E-27 9.4E-32 149.5 8.4 110 1-110 12-152 (166)
32 cd04175 Rap1 Rap1 subgroup. T 99.9 5.1E-27 1.1E-31 148.7 8.0 110 1-110 11-151 (164)
33 PLN03071 GTP-binding nuclear p 99.9 1E-26 2.3E-31 154.4 9.6 110 1-110 23-160 (219)
34 KOG0088|consensus 99.9 5.4E-28 1.2E-32 150.9 3.1 109 1-109 23-162 (218)
35 cd04117 Rab15 Rab15 subfamily. 99.9 9.6E-27 2.1E-31 147.6 9.0 110 1-110 10-150 (161)
36 cd04136 Rap_like Rap-like subf 99.9 7.1E-27 1.5E-31 147.5 8.1 111 1-111 11-152 (163)
37 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.3E-26 2.8E-31 148.4 8.7 111 1-111 10-154 (170)
38 cd04144 Ras2 Ras2 subfamily. 99.9 1.1E-26 2.3E-31 151.1 7.9 110 1-110 9-151 (190)
39 smart00174 RHO Rho (Ras homolo 99.9 5.6E-26 1.2E-30 145.1 10.6 110 1-110 8-160 (174)
40 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 4E-26 8.6E-31 149.5 9.7 110 1-110 10-156 (201)
41 cd01873 RhoBTB RhoBTB subfamil 99.9 5.6E-26 1.2E-30 148.6 9.2 109 1-111 12-185 (195)
42 PTZ00369 Ras-like protein; Pro 99.9 4.9E-26 1.1E-30 147.8 8.8 110 1-110 15-155 (189)
43 cd04140 ARHI_like ARHI subfami 99.9 6.3E-26 1.4E-30 144.1 8.3 110 1-110 11-153 (165)
44 cd04176 Rap2 Rap2 subgroup. T 99.9 9.2E-26 2E-30 142.8 9.0 110 1-110 11-151 (163)
45 cd04138 H_N_K_Ras_like H-Ras/N 99.9 6.8E-26 1.5E-30 142.5 8.3 110 1-110 11-150 (162)
46 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.3E-25 5.1E-30 142.6 10.6 111 1-111 10-163 (173)
47 cd01865 Rab3 Rab3 subfamily. 99.9 1.2E-25 2.6E-30 142.9 8.7 110 1-110 11-151 (165)
48 KOG0395|consensus 99.9 3.3E-26 7.2E-31 149.7 6.2 110 1-110 13-153 (196)
49 cd00877 Ran Ran (Ras-related n 99.9 2.5E-25 5.5E-30 141.9 10.1 110 1-110 10-147 (166)
50 cd04127 Rab27A Rab27a subfamil 99.9 1.4E-25 3E-30 144.1 8.1 110 1-110 14-165 (180)
51 cd04132 Rho4_like Rho4-like su 99.9 3.7E-25 8E-30 143.0 9.8 110 1-110 10-155 (187)
52 cd04109 Rab28 Rab28 subfamily. 99.9 2.1E-25 4.5E-30 147.6 8.6 110 1-110 10-154 (215)
53 cd04124 RabL2 RabL2 subfamily. 99.9 8.2E-25 1.8E-29 138.7 9.9 110 1-110 10-146 (161)
54 cd04119 RJL RJL (RabJ-Like) su 99.9 4.3E-25 9.4E-30 139.6 8.4 110 1-110 10-155 (168)
55 PF00071 Ras: Ras family; Int 99.9 4.6E-25 1E-29 139.3 8.0 110 1-110 9-149 (162)
56 cd04116 Rab9 Rab9 subfamily. 99.9 8.3E-25 1.8E-29 139.3 9.1 110 1-110 15-159 (170)
57 cd01867 Rab8_Rab10_Rab13_like 99.9 6.9E-25 1.5E-29 139.6 8.1 111 1-111 13-154 (167)
58 cd04110 Rab35 Rab35 subfamily. 99.9 1.2E-24 2.5E-29 142.5 9.1 110 1-110 16-155 (199)
59 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.1E-24 2.4E-29 138.3 8.7 110 1-110 12-152 (166)
60 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.4E-25 5.2E-30 141.8 5.3 103 1-106 9-144 (164)
61 cd04103 Centaurin_gamma Centau 99.9 1.7E-24 3.6E-29 137.4 9.1 104 1-110 10-147 (158)
62 smart00173 RAS Ras subfamily o 99.9 8.6E-25 1.9E-29 138.3 7.6 110 1-110 10-150 (164)
63 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.7E-24 3.7E-29 138.2 9.0 110 1-110 12-157 (170)
64 cd04143 Rhes_like Rhes_like su 99.9 1.3E-24 2.9E-29 146.6 8.9 110 1-110 10-159 (247)
65 cd04106 Rab23_lke Rab23-like s 99.9 1.4E-24 3E-29 137.0 8.4 110 1-110 10-151 (162)
66 PLN03110 Rab GTPase; Provision 99.9 1.8E-24 3.8E-29 143.4 9.0 110 1-110 22-162 (216)
67 cd04126 Rab20 Rab20 subfamily. 99.9 1.3E-24 2.8E-29 144.5 8.4 84 1-88 10-113 (220)
68 cd04125 RabA_like RabA-like su 99.9 2.4E-24 5.2E-29 139.5 9.4 110 1-110 10-150 (188)
69 KOG0393|consensus 99.9 2.8E-25 6.1E-30 144.0 4.7 111 1-111 14-168 (198)
70 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.9E-24 4.1E-29 136.5 8.3 110 1-110 12-152 (164)
71 cd01870 RhoA_like RhoA-like su 99.9 6.7E-24 1.4E-28 135.6 10.2 110 1-110 11-163 (175)
72 cd04135 Tc10 TC10 subfamily. 99.9 1.1E-23 2.4E-28 134.5 11.0 111 1-111 10-163 (174)
73 cd04111 Rab39 Rab39 subfamily. 99.9 2.8E-24 6.1E-29 142.0 8.5 110 1-110 12-154 (211)
74 PLN00223 ADP-ribosylation fact 99.9 1E-24 2.2E-29 141.1 5.9 106 1-110 27-166 (181)
75 cd01892 Miro2 Miro2 subfamily. 99.9 5.6E-24 1.2E-28 136.0 9.0 110 1-110 14-154 (169)
76 cd04177 RSR1 RSR1 subgroup. R 99.9 6.8E-24 1.5E-28 135.1 9.2 110 1-110 11-152 (168)
77 cd04118 Rab24 Rab24 subfamily. 99.9 1.7E-23 3.7E-28 135.9 10.6 110 1-110 10-154 (193)
78 cd04149 Arf6 Arf6 subfamily. 99.9 1.6E-24 3.6E-29 138.5 5.6 106 1-110 19-158 (168)
79 cd04112 Rab26 Rab26 subfamily. 99.9 9.8E-24 2.1E-28 137.2 9.0 110 1-110 10-151 (191)
80 cd01868 Rab11_like Rab11-like. 99.9 9.4E-24 2E-28 133.8 8.7 110 1-110 13-153 (165)
81 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.6E-24 5.6E-29 136.3 6.0 106 1-110 10-149 (159)
82 cd01864 Rab19 Rab19 subfamily. 99.9 1.2E-23 2.5E-28 133.5 8.2 110 1-110 13-154 (165)
83 smart00177 ARF ARF-like small 99.9 5.1E-24 1.1E-28 136.9 5.9 106 1-110 23-162 (175)
84 cd04113 Rab4 Rab4 subfamily. 99.9 3.7E-23 8E-28 130.6 9.0 110 1-110 10-150 (161)
85 PLN03108 Rab family protein; P 99.9 3.1E-23 6.7E-28 136.8 8.4 110 1-110 16-156 (210)
86 cd04101 RabL4 RabL4 (Rab-like4 99.9 3.6E-23 7.8E-28 130.9 8.2 110 1-110 10-152 (164)
87 cd04142 RRP22 RRP22 subfamily. 99.9 5.2E-23 1.1E-27 134.8 9.1 111 1-111 10-163 (198)
88 PLN03118 Rab family protein; P 99.9 4.7E-23 1E-27 135.9 8.3 109 1-110 24-165 (211)
89 cd04146 RERG_RasL11_like RERG/ 99.9 3.6E-23 7.8E-28 131.3 7.4 110 1-110 9-152 (165)
90 PTZ00133 ADP-ribosylation fact 99.9 2.2E-23 4.8E-28 134.9 6.1 106 1-110 27-166 (182)
91 cd01866 Rab2 Rab2 subfamily. 99.9 9.9E-23 2.2E-27 129.8 8.7 110 1-110 14-154 (168)
92 cd04158 ARD1 ARD1 subfamily. 99.9 5.8E-23 1.3E-27 131.2 6.8 106 1-110 9-149 (169)
93 cd04129 Rho2 Rho2 subfamily. 99.9 4E-22 8.7E-27 129.2 10.6 110 1-110 11-161 (187)
94 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.4E-22 5.2E-27 132.1 8.9 71 1-71 10-86 (202)
95 PTZ00132 GTP-binding nuclear p 99.9 4.4E-22 9.6E-27 131.5 9.7 110 1-110 19-156 (215)
96 cd00157 Rho Rho (Ras homology) 99.9 9.5E-22 2.1E-26 124.9 10.7 110 1-110 10-161 (171)
97 cd01860 Rab5_related Rab5-rela 99.9 3.1E-22 6.6E-27 126.4 8.3 110 1-110 11-151 (163)
98 cd01863 Rab18 Rab18 subfamily. 99.9 4.8E-22 1E-26 125.4 9.1 110 1-110 10-150 (161)
99 cd01861 Rab6 Rab6 subfamily. 99.9 3.9E-22 8.5E-27 125.7 8.5 110 1-110 10-150 (161)
100 cd01862 Rab7 Rab7 subfamily. 99.9 7.1E-22 1.5E-26 125.6 8.5 110 1-110 10-155 (172)
101 PTZ00099 rab6; Provisional 99.9 5.5E-22 1.2E-26 127.9 7.4 99 13-111 2-131 (176)
102 cd04147 Ras_dva Ras-dva subfam 99.9 8.5E-22 1.8E-26 128.8 8.3 110 1-110 9-151 (198)
103 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.1E-22 9E-27 128.8 6.7 109 1-110 13-158 (183)
104 cd04148 RGK RGK subfamily. Th 99.9 1.1E-21 2.5E-26 130.4 8.9 108 1-110 10-151 (221)
105 cd04139 RalA_RalB RalA/RalB su 99.9 1.3E-21 2.8E-26 123.3 8.8 110 1-110 10-150 (164)
106 cd04157 Arl6 Arl6 subfamily. 99.9 2.5E-22 5.5E-27 126.6 5.4 107 1-110 9-152 (162)
107 smart00175 RAB Rab subfamily o 99.9 1.3E-21 2.8E-26 123.4 8.4 110 1-110 10-150 (164)
108 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.6E-22 7.8E-27 127.4 5.3 103 1-107 9-148 (167)
109 PLN00023 GTP-binding protein; 99.9 1.5E-21 3.3E-26 135.2 8.5 89 1-89 31-165 (334)
110 cd04114 Rab30 Rab30 subfamily. 99.9 3.6E-21 7.8E-26 122.2 8.8 110 1-110 17-157 (169)
111 cd04154 Arl2 Arl2 subfamily. 99.9 1.5E-21 3.4E-26 124.8 7.0 106 1-110 24-163 (173)
112 cd04151 Arl1 Arl1 subfamily. 99.8 1.2E-21 2.7E-26 123.5 5.5 106 1-110 9-148 (158)
113 cd04123 Rab21 Rab21 subfamily. 99.8 7.8E-21 1.7E-25 119.4 9.0 110 1-110 10-150 (162)
114 cd01893 Miro1 Miro1 subfamily. 99.8 7.6E-21 1.6E-25 120.9 8.2 110 1-111 10-153 (166)
115 cd04156 ARLTS1 ARLTS1 subfamil 99.8 5.2E-21 1.1E-25 120.5 7.2 107 1-110 9-150 (160)
116 cd04137 RheB Rheb (Ras Homolog 99.8 7.2E-21 1.6E-25 122.2 7.9 110 1-110 11-151 (180)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.7E-21 6E-26 124.0 5.8 107 1-111 25-165 (174)
118 KOG4252|consensus 99.8 4.2E-23 9E-28 131.4 -4.2 110 1-110 30-169 (246)
119 cd00876 Ras Ras family. The R 99.8 2.4E-20 5.2E-25 117.0 7.2 111 1-111 9-150 (160)
120 cd00154 Rab Rab family. Rab G 99.8 5.4E-20 1.2E-24 114.6 8.4 110 1-110 10-150 (159)
121 KOG0070|consensus 99.8 5.7E-21 1.2E-25 121.7 3.8 105 1-109 27-165 (181)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.4E-20 5.3E-25 118.2 6.0 107 1-110 9-157 (167)
123 cd04159 Arl10_like Arl10-like 99.8 2.6E-20 5.6E-25 116.2 5.6 107 1-110 9-149 (159)
124 COG1100 GTPase SAR1 and relate 99.8 6.8E-20 1.5E-24 120.9 7.9 88 1-88 15-124 (219)
125 KOG0096|consensus 99.8 5.2E-20 1.1E-24 117.9 6.8 110 1-110 20-157 (216)
126 cd00879 Sar1 Sar1 subfamily. 99.8 5.4E-20 1.2E-24 119.1 6.9 106 1-110 29-179 (190)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.8 8.2E-20 1.8E-24 114.9 6.5 106 1-110 9-148 (158)
128 PF00025 Arf: ADP-ribosylation 99.8 9.6E-20 2.1E-24 117.3 5.2 106 1-110 24-164 (175)
129 KOG0075|consensus 99.8 2.3E-20 5E-25 115.4 1.4 107 1-110 30-170 (186)
130 cd01890 LepA LepA subfamily. 99.8 5.3E-19 1.1E-23 113.2 6.6 110 1-110 10-165 (179)
131 smart00178 SAR Sar1p-like memb 99.8 3.7E-19 8.1E-24 115.2 5.7 106 1-110 27-173 (184)
132 cd04171 SelB SelB subfamily. 99.8 1.1E-18 2.4E-23 109.8 6.4 108 1-110 10-154 (164)
133 cd01891 TypA_BipA TypA (tyrosi 99.8 9.3E-19 2E-23 114.0 5.2 110 1-110 12-170 (194)
134 TIGR00231 small_GTP small GTP- 99.7 1.9E-17 4E-22 102.7 8.4 110 1-110 11-152 (161)
135 cd01879 FeoB Ferrous iron tran 99.7 1.7E-17 3.7E-22 104.0 7.3 109 1-111 6-146 (158)
136 KOG0073|consensus 99.7 1.3E-17 2.8E-22 104.7 6.6 106 1-110 26-166 (185)
137 KOG4423|consensus 99.7 5.9E-20 1.3E-24 117.5 -5.1 110 1-110 35-182 (229)
138 cd04155 Arl3 Arl3 subfamily. 99.7 2.6E-17 5.7E-22 104.8 6.0 106 1-110 24-163 (173)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 4.8E-17 1E-21 102.9 6.3 110 1-110 10-154 (168)
140 KOG0071|consensus 99.7 4.3E-17 9.2E-22 100.3 4.9 91 1-95 27-138 (180)
141 TIGR02528 EutP ethanolamine ut 99.7 2.6E-17 5.7E-22 102.0 3.9 96 1-110 10-133 (142)
142 cd01897 NOG NOG1 is a nucleola 99.6 2E-15 4.3E-20 95.7 8.0 107 1-110 10-156 (168)
143 TIGR01393 lepA GTP-binding pro 99.6 9.4E-16 2E-20 114.3 6.8 110 1-110 13-168 (595)
144 PRK04213 GTP-binding protein; 99.6 9.6E-16 2.1E-20 100.1 5.6 104 1-110 19-180 (201)
145 cd01894 EngA1 EngA1 subfamily. 99.6 2.6E-15 5.5E-20 93.8 7.1 108 1-110 7-146 (157)
146 cd00882 Ras_like_GTPase Ras-li 99.6 4.9E-15 1.1E-19 90.7 7.9 109 1-110 6-148 (157)
147 KOG1673|consensus 99.6 7.5E-16 1.6E-20 96.4 4.2 109 2-110 31-174 (205)
148 TIGR03598 GTPase_YsxC ribosome 99.6 2.8E-15 6.1E-20 96.5 6.6 108 1-111 28-179 (179)
149 TIGR00487 IF-2 translation ini 99.6 6.7E-15 1.5E-19 109.5 9.1 109 1-110 97-238 (587)
150 PRK03003 GTP-binding protein D 99.6 2.3E-15 5E-20 109.8 6.5 108 1-110 221-370 (472)
151 TIGR00437 feoB ferrous iron tr 99.6 6.6E-15 1.4E-19 109.7 8.2 108 1-110 4-143 (591)
152 cd01878 HflX HflX subfamily. 99.6 4.7E-15 1E-19 97.1 6.1 107 1-110 51-193 (204)
153 cd04105 SR_beta Signal recogni 99.6 4.6E-15 1E-19 97.6 5.9 87 1-88 10-122 (203)
154 TIGR03594 GTPase_EngA ribosome 99.6 1.1E-14 2.3E-19 104.9 8.1 108 1-110 182-332 (429)
155 KOG0072|consensus 99.6 6.8E-16 1.5E-20 95.4 1.0 106 1-110 28-167 (182)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.2E-14 4.7E-19 103.9 8.6 104 1-106 213-345 (442)
157 PRK05291 trmE tRNA modificatio 99.6 1.4E-14 3E-19 105.1 7.5 108 1-110 225-358 (449)
158 TIGR00491 aIF-2 translation in 99.6 1.6E-15 3.5E-20 112.8 2.7 110 1-110 14-156 (590)
159 PRK03003 GTP-binding protein D 99.5 1.4E-14 3E-19 105.7 7.2 108 1-110 48-187 (472)
160 PF08477 Miro: Miro-like prote 99.5 1.3E-14 2.9E-19 87.3 6.0 86 1-86 9-119 (119)
161 PRK00093 GTP-binding protein D 99.5 1.6E-14 3.6E-19 104.2 6.9 108 1-110 11-150 (435)
162 PRK05306 infB translation init 99.5 3.4E-14 7.4E-19 108.4 8.9 108 1-110 300-440 (787)
163 cd01898 Obg Obg subfamily. Th 99.5 2.4E-14 5.1E-19 90.8 6.3 108 1-110 10-159 (170)
164 TIGR00475 selB selenocysteine- 99.5 3.1E-14 6.7E-19 106.0 7.7 108 1-110 10-154 (581)
165 CHL00189 infB translation init 99.5 2.4E-14 5.2E-19 108.5 7.0 110 1-110 254-398 (742)
166 PRK15494 era GTPase Era; Provi 99.5 4.3E-14 9.2E-19 99.4 7.7 107 1-110 62-204 (339)
167 TIGR03156 GTP_HflX GTP-binding 99.5 2.4E-14 5.2E-19 101.1 6.1 107 1-110 199-340 (351)
168 cd01881 Obg_like The Obg-like 99.5 6.7E-14 1.4E-18 89.0 6.7 108 1-110 6-165 (176)
169 cd00881 GTP_translation_factor 99.5 8.8E-14 1.9E-18 89.3 6.7 110 1-110 9-175 (189)
170 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.9E-13 4.2E-18 85.1 7.5 107 1-110 11-145 (157)
171 cd01889 SelB_euk SelB subfamil 99.5 5.9E-14 1.3E-18 91.3 5.2 110 1-110 10-174 (192)
172 KOG0076|consensus 99.5 9.9E-15 2.2E-19 92.6 1.1 108 1-111 27-176 (197)
173 TIGR03594 GTPase_EngA ribosome 99.5 1.5E-13 3.3E-18 98.9 6.8 108 1-110 9-148 (429)
174 KOG0074|consensus 99.5 2E-13 4.2E-18 84.4 6.3 106 1-109 27-166 (185)
175 PRK00454 engB GTP-binding prot 99.5 1.1E-13 2.4E-18 89.8 5.4 108 1-110 34-182 (196)
176 cd01895 EngA2 EngA2 subfamily. 99.4 7.2E-13 1.6E-17 83.6 8.0 108 1-110 12-163 (174)
177 PRK05433 GTP-binding protein L 99.4 2.8E-13 6.1E-18 101.2 6.2 110 1-110 17-172 (600)
178 TIGR00436 era GTP-binding prot 99.4 5.9E-13 1.3E-17 91.0 7.2 108 1-110 10-152 (270)
179 cd00880 Era_like Era (E. coli 99.4 1.4E-12 3E-17 80.6 7.4 109 1-110 6-152 (163)
180 PRK09518 bifunctional cytidyla 99.4 7.9E-13 1.7E-17 100.6 6.7 108 1-110 460-609 (712)
181 PRK10218 GTP-binding protein; 99.4 1.3E-12 2.7E-17 97.8 7.5 109 1-109 15-172 (607)
182 KOG3883|consensus 99.4 3E-12 6.4E-17 80.2 7.1 106 1-106 19-159 (198)
183 PRK04004 translation initiatio 99.4 2.8E-13 6.1E-18 101.0 2.8 109 1-109 16-157 (586)
184 TIGR02729 Obg_CgtA Obg family 99.3 2.8E-12 6.1E-17 89.9 6.9 104 1-110 167-317 (329)
185 PRK09518 bifunctional cytidyla 99.3 3.8E-12 8.2E-17 96.9 8.1 108 1-110 285-424 (712)
186 PRK11058 GTPase HflX; Provisio 99.3 2E-12 4.2E-17 93.4 5.9 108 1-110 207-350 (426)
187 PRK15467 ethanolamine utilizat 99.3 8.6E-13 1.9E-17 83.7 3.5 97 1-110 11-135 (158)
188 cd01896 DRG The developmentall 99.3 1.4E-11 2.9E-16 82.8 8.7 69 1-71 10-86 (233)
189 PRK12299 obgE GTPase CgtA; Rev 99.3 6.5E-12 1.4E-16 88.3 7.4 108 1-110 168-316 (335)
190 TIGR00483 EF-1_alpha translati 99.3 6.4E-12 1.4E-16 90.8 7.2 77 34-110 80-195 (426)
191 cd04163 Era Era subfamily. Er 99.3 9.3E-12 2E-16 77.8 6.4 108 1-110 13-157 (168)
192 PRK00093 GTP-binding protein D 99.3 1E-11 2.2E-16 89.8 7.1 108 1-110 183-332 (435)
193 PRK10512 selenocysteinyl-tRNA- 99.3 1.3E-11 2.8E-16 92.7 7.7 108 1-110 10-154 (614)
194 cd04166 CysN_ATPS CysN_ATPS su 99.2 2.8E-11 6.1E-16 79.8 6.6 75 37-111 75-183 (208)
195 cd04167 Snu114p Snu114p subfam 99.2 6E-12 1.3E-16 83.2 3.4 87 1-87 10-135 (213)
196 PRK12297 obgE GTPase CgtA; Rev 99.2 3.3E-11 7.2E-16 86.9 7.1 108 1-110 168-315 (424)
197 PRK00089 era GTPase Era; Revie 99.2 3.5E-11 7.7E-16 82.9 6.8 108 1-110 15-159 (292)
198 TIGR01394 TypA_BipA GTP-bindin 99.2 2E-11 4.2E-16 91.4 5.9 109 1-109 11-168 (594)
199 cd01888 eIF2_gamma eIF2-gamma 99.2 2.2E-11 4.9E-16 80.0 5.0 72 39-110 83-187 (203)
200 PRK12296 obgE GTPase CgtA; Rev 99.2 6.3E-11 1.4E-15 86.8 7.3 107 1-110 169-328 (500)
201 PRK09554 feoB ferrous iron tra 99.2 8.4E-11 1.8E-15 90.2 8.2 108 1-110 13-156 (772)
202 cd01876 YihA_EngB The YihA (En 99.2 2.5E-11 5.4E-16 76.1 4.5 107 1-110 9-159 (170)
203 smart00010 small_GTPase Small 99.2 1.1E-11 2.5E-16 74.6 2.6 102 1-110 10-114 (124)
204 PRK12317 elongation factor 1-a 99.2 2.4E-10 5.1E-15 82.6 8.5 77 34-110 79-193 (425)
205 COG2229 Predicted GTPase [Gene 99.1 1.3E-10 2.9E-15 74.5 5.6 107 1-109 20-165 (187)
206 cd04168 TetM_like Tet(M)-like 99.1 6.4E-11 1.4E-15 79.7 3.9 89 1-89 9-130 (237)
207 cd01883 EF1_alpha Eukaryotic e 99.1 2.4E-10 5.2E-15 76.0 5.8 76 36-111 74-194 (219)
208 cd04169 RF3 RF3 subfamily. Pe 99.1 2.1E-10 4.5E-15 78.5 5.4 57 33-89 65-137 (267)
209 cd01850 CDC_Septin CDC/Septin. 99.1 1.3E-09 2.8E-14 74.9 9.2 49 1-49 14-73 (276)
210 TIGR03680 eif2g_arch translati 99.0 4.8E-10 1E-14 80.7 4.6 73 38-110 79-184 (406)
211 TIGR00485 EF-Tu translation el 98.9 2E-09 4.4E-14 77.2 5.9 77 33-109 69-180 (394)
212 cd04104 p47_IIGP_like p47 (47- 98.9 1.9E-09 4.2E-14 70.5 5.3 87 1-87 11-119 (197)
213 PRK04000 translation initiatio 98.9 1.5E-09 3.2E-14 78.3 5.0 72 39-110 85-189 (411)
214 cd01885 EF2 EF2 (for archaea a 98.9 3.1E-09 6.7E-14 71.0 5.6 53 36-88 70-138 (222)
215 cd04170 EF-G_bact Elongation f 98.9 3.3E-09 7.2E-14 72.4 5.6 53 37-89 62-130 (268)
216 PRK13351 elongation factor G; 98.9 1.6E-09 3.5E-14 82.5 4.2 85 1-88 18-138 (687)
217 PF02421 FeoB_N: Ferrous iron 98.9 1.3E-08 2.9E-13 64.5 7.0 108 1-110 10-149 (156)
218 cd01899 Ygr210 Ygr210 subfamil 98.9 3.2E-09 6.9E-14 74.3 4.4 73 1-73 8-110 (318)
219 cd01884 EF_Tu EF-Tu subfamily. 98.9 9.1E-09 2E-13 67.4 6.2 110 1-110 12-171 (195)
220 TIGR00503 prfC peptide chain r 98.8 5.8E-09 1.3E-13 77.3 5.6 88 1-88 21-145 (527)
221 PF00009 GTP_EFTU: Elongation 98.8 9.6E-10 2.1E-14 71.3 1.2 75 36-110 67-175 (188)
222 PRK12735 elongation factor Tu; 98.8 1.1E-08 2.3E-13 73.6 6.5 110 1-110 22-181 (396)
223 TIGR00490 aEF-2 translation el 98.8 4.9E-09 1.1E-13 80.2 4.9 88 1-88 29-151 (720)
224 PRK00741 prfC peptide chain re 98.8 3.7E-09 8E-14 78.3 4.0 89 1-89 20-145 (526)
225 PRK12298 obgE GTPase CgtA; Rev 98.8 1.5E-08 3.4E-13 72.6 6.6 109 1-110 169-321 (390)
226 COG0486 ThdF Predicted GTPase 98.8 3.7E-08 8E-13 71.2 7.8 108 1-110 227-364 (454)
227 KOG1707|consensus 98.7 3.7E-09 7.9E-14 77.9 1.9 109 1-110 19-163 (625)
228 PRK14845 translation initiatio 98.7 4E-08 8.7E-13 77.4 7.0 84 2-88 472-591 (1049)
229 KOG0077|consensus 98.7 5E-09 1.1E-13 66.5 1.3 91 1-95 30-141 (193)
230 TIGR02034 CysN sulfate adenyly 98.7 3.9E-08 8.4E-13 70.9 5.6 74 37-110 78-185 (406)
231 PRK12736 elongation factor Tu; 98.7 4.9E-08 1.1E-12 70.2 6.0 108 1-108 22-179 (394)
232 PLN00043 elongation factor 1-a 98.7 8.3E-08 1.8E-12 70.0 7.1 76 35-110 81-201 (447)
233 COG1159 Era GTPase [General fu 98.7 5.2E-08 1.1E-12 67.0 5.6 108 1-110 16-160 (298)
234 COG1160 Predicted GTPases [Gen 98.6 3.8E-08 8.1E-13 71.0 4.3 107 1-109 13-152 (444)
235 PLN03126 Elongation factor Tu; 98.6 8.7E-08 1.9E-12 70.4 6.1 110 1-110 91-250 (478)
236 cd01886 EF-G Elongation factor 98.6 5E-08 1.1E-12 66.9 4.5 53 37-89 62-130 (270)
237 COG0532 InfB Translation initi 98.6 1.8E-07 3.9E-12 68.5 6.7 106 2-110 16-158 (509)
238 cd04165 GTPBP1_like GTPBP1-lik 98.6 1.4E-07 3E-12 63.1 5.7 50 38-87 83-150 (224)
239 PRK05124 cysN sulfate adenylyl 98.6 1.4E-07 3.1E-12 69.3 6.0 75 36-110 104-213 (474)
240 PF09439 SRPRB: Signal recogni 98.5 1.8E-08 3.9E-13 65.3 0.5 85 1-88 13-125 (181)
241 KOG0462|consensus 98.5 3E-07 6.5E-12 67.8 6.6 76 35-110 121-223 (650)
242 CHL00071 tufA elongation facto 98.5 2.9E-07 6.3E-12 66.5 6.3 109 1-110 22-181 (409)
243 TIGR00484 EF-G translation elo 98.5 1.5E-07 3.3E-12 71.8 5.0 52 37-88 73-140 (689)
244 PRK00049 elongation factor Tu; 98.5 5.3E-07 1.2E-11 64.9 7.4 107 1-109 22-180 (396)
245 cd00066 G-alpha G protein alph 98.5 1.5E-07 3.2E-12 66.0 4.1 73 16-88 130-241 (317)
246 KOG1145|consensus 98.5 3.9E-07 8.4E-12 67.3 5.7 104 3-110 165-304 (683)
247 PRK05506 bifunctional sulfate 98.5 3.7E-07 8.1E-12 69.1 5.7 74 37-110 102-209 (632)
248 PF04670 Gtr1_RagA: Gtr1/RagA 98.4 3.2E-07 6.9E-12 61.7 4.3 85 1-87 9-123 (232)
249 smart00275 G_alpha G protein a 98.4 6.1E-07 1.3E-11 63.5 5.5 66 21-89 169-265 (342)
250 TIGR00157 ribosome small subun 98.4 9E-07 2E-11 60.0 5.6 61 50-110 24-111 (245)
251 PRK12740 elongation factor G; 98.3 4.7E-07 1E-11 69.0 3.9 52 37-88 58-125 (668)
252 COG1160 Predicted GTPases [Gen 98.3 2.9E-06 6.2E-11 61.5 7.4 108 1-110 188-339 (444)
253 PTZ00141 elongation factor 1- 98.3 2.7E-06 5.8E-11 62.2 7.0 77 34-110 80-201 (446)
254 COG0481 LepA Membrane GTPase L 98.3 2.9E-07 6.2E-12 67.1 1.7 76 35-110 72-174 (603)
255 PF10662 PduV-EutP: Ethanolami 98.2 1.6E-06 3.5E-11 54.2 4.0 96 1-110 11-134 (143)
256 PF01926 MMR_HSR1: 50S ribosom 98.2 5.9E-06 1.3E-10 49.4 6.4 68 1-71 9-88 (116)
257 PRK09602 translation-associate 98.2 1.4E-06 3E-11 62.8 3.8 73 1-73 11-113 (396)
258 cd01859 MJ1464 MJ1464. This f 98.1 9.7E-06 2.1E-10 50.9 5.3 44 1-48 111-155 (156)
259 PRK12739 elongation factor G; 98.1 3E-06 6.4E-11 65.0 3.5 52 37-88 71-138 (691)
260 PLN03127 Elongation factor Tu; 98.0 2.1E-05 4.6E-10 57.6 7.0 55 34-88 119-190 (447)
261 KOG1489|consensus 98.0 2.6E-05 5.7E-10 54.5 6.6 103 1-110 206-355 (366)
262 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 1.4E-05 3E-10 49.6 4.8 45 1-49 93-138 (141)
263 KOG0705|consensus 98.0 3.6E-06 7.7E-11 62.5 2.4 104 1-110 40-177 (749)
264 COG3596 Predicted GTPase [Gene 98.0 3.4E-06 7.5E-11 57.7 2.1 63 1-65 49-120 (296)
265 KOG0090|consensus 98.0 4.2E-06 9.1E-11 55.4 1.8 83 1-87 48-157 (238)
266 COG2895 CysN GTPases - Sulfate 97.9 2.7E-05 5.9E-10 55.2 5.3 74 36-110 83-191 (431)
267 COG0370 FeoB Fe2+ transport sy 97.9 4.3E-05 9.4E-10 57.8 6.6 105 1-109 13-151 (653)
268 KOG1423|consensus 97.8 4.3E-05 9.3E-10 53.4 5.3 85 1-87 82-197 (379)
269 COG5256 TEF1 Translation elong 97.8 7.3E-05 1.6E-09 53.8 6.2 77 35-111 81-200 (428)
270 COG2262 HflX GTPases [General 97.8 9.4E-05 2E-09 53.2 6.3 109 1-110 202-344 (411)
271 cd01856 YlqF YlqF. Proteins o 97.8 5.2E-05 1.1E-09 48.5 4.6 45 1-49 125-170 (171)
272 PTZ00327 eukaryotic translatio 97.8 2.5E-05 5.5E-10 57.4 3.4 72 39-110 117-221 (460)
273 COG0218 Predicted GTPase [Gene 97.7 4.1E-05 8.9E-10 50.2 3.5 85 1-88 34-148 (200)
274 cd01853 Toc34_like Toc34-like 97.7 0.00012 2.5E-09 49.9 5.6 50 1-52 41-92 (249)
275 COG1163 DRG Predicted GTPase [ 97.6 0.00052 1.1E-08 48.3 8.2 34 77-110 241-277 (365)
276 PRK00007 elongation factor G; 97.6 6E-05 1.3E-09 58.0 3.9 52 37-88 73-140 (693)
277 PTZ00416 elongation factor 2; 97.6 9.7E-05 2.1E-09 57.9 4.5 51 38-88 91-157 (836)
278 COG1217 TypA Predicted membran 97.6 0.00023 4.9E-09 52.4 6.0 106 3-108 17-171 (603)
279 TIGR00991 3a0901s02IAP34 GTP-b 97.5 0.00027 5.8E-09 49.6 5.5 49 1-52 48-99 (313)
280 COG0536 Obg Predicted GTPase [ 97.5 0.00059 1.3E-08 48.3 6.7 38 72-110 272-321 (369)
281 PLN00116 translation elongatio 97.5 0.00012 2.6E-09 57.5 3.6 52 37-88 96-163 (843)
282 cd01900 YchF YchF subfamily. 97.5 0.00018 3.9E-09 49.6 4.0 86 1-87 8-117 (274)
283 PRK07560 elongation factor EF- 97.4 0.00025 5.3E-09 55.0 4.8 54 35-88 83-152 (731)
284 COG1084 Predicted GTPase [Gene 97.4 0.00018 4E-09 50.5 3.6 45 1-50 178-226 (346)
285 cd01882 BMS1 Bms1. Bms1 is an 97.3 0.00088 1.9E-08 44.8 5.6 81 1-88 49-146 (225)
286 PF00735 Septin: Septin; Inte 97.2 0.0017 3.6E-08 45.1 6.6 49 1-49 14-73 (281)
287 KOG3886|consensus 97.2 0.00014 3.1E-09 49.0 0.8 86 1-88 14-129 (295)
288 PTZ00258 GTP-binding protein; 97.2 0.0013 2.8E-08 47.6 5.7 87 1-87 31-140 (390)
289 KOG0458|consensus 97.1 0.00093 2E-08 50.1 4.6 80 31-110 247-370 (603)
290 PF05049 IIGP: Interferon-indu 97.1 0.00036 7.8E-09 50.1 2.3 87 1-87 45-153 (376)
291 cd01855 YqeH YqeH. YqeH is an 97.0 0.00074 1.6E-08 43.8 3.3 15 1-15 137-151 (190)
292 cd01858 NGP_1 NGP-1. Autoanti 97.0 0.0023 4.9E-08 40.2 5.4 44 1-48 112-156 (157)
293 TIGR03596 GTPase_YlqF ribosome 97.0 0.0019 4.1E-08 44.5 5.1 45 1-49 128-173 (276)
294 cd01855 YqeH YqeH. YqeH is an 97.0 0.0003 6.6E-09 45.6 0.9 36 75-110 61-113 (190)
295 PRK09601 GTP-binding protein Y 96.9 0.0038 8.3E-08 44.8 6.4 87 1-87 12-121 (364)
296 KOG1191|consensus 96.9 0.0043 9.3E-08 45.9 6.5 49 1-51 278-328 (531)
297 PRK09563 rbgA GTPase YlqF; Rev 96.9 0.0036 7.7E-08 43.4 5.7 46 1-50 131-177 (287)
298 TIGR03597 GTPase_YqeH ribosome 96.9 0.0005 1.1E-08 49.1 1.5 63 48-110 49-141 (360)
299 KOG0468|consensus 96.9 0.0023 5E-08 49.1 5.0 88 1-88 138-262 (971)
300 cd04178 Nucleostemin_like Nucl 96.8 0.0032 6.9E-08 40.5 4.7 44 1-48 127-171 (172)
301 COG1161 Predicted GTPases [Gen 96.8 0.0023 5E-08 45.1 4.4 45 1-49 142-187 (322)
302 cd01852 AIG1 AIG1 (avrRpt2-ind 96.8 0.0028 6.1E-08 41.3 4.3 49 1-52 10-62 (196)
303 PF00503 G-alpha: G-protein al 96.7 0.0048 1E-07 44.5 5.2 52 37-88 234-316 (389)
304 KOG0082|consensus 96.6 0.0038 8.3E-08 44.5 4.5 51 37-87 193-274 (354)
305 KOG1490|consensus 96.6 0.002 4.3E-08 47.9 2.7 108 1-110 178-329 (620)
306 cd01854 YjeQ_engC YjeQ/EngC. 96.5 0.0024 5.3E-08 44.3 2.8 16 1-16 171-186 (287)
307 TIGR00092 GTP-binding protein 96.5 0.0077 1.7E-07 43.3 5.1 89 1-89 12-124 (368)
308 KOG1707|consensus 96.4 0.021 4.5E-07 43.2 7.4 88 1-90 435-541 (625)
309 cd01859 MJ1464 MJ1464. This f 96.4 0.0013 2.7E-08 41.3 0.8 36 75-110 41-84 (156)
310 PRK12288 GTPase RsgA; Reviewed 96.4 0.0043 9.4E-08 44.3 3.4 15 1-15 215-229 (347)
311 PF04548 AIG1: AIG1 family; I 96.3 0.006 1.3E-07 40.4 3.8 47 1-49 10-59 (212)
312 COG4917 EutP Ethanolamine util 96.3 0.0031 6.7E-08 38.8 2.0 97 1-109 11-133 (148)
313 TIGR03597 GTPase_YqeH ribosome 96.3 0.0062 1.3E-07 43.6 3.8 15 1-15 164-178 (360)
314 COG4108 PrfC Peptide chain rel 96.2 0.0084 1.8E-07 44.0 4.1 63 25-87 66-145 (528)
315 PRK12289 GTPase RsgA; Reviewed 96.2 0.005 1.1E-07 44.0 3.0 60 51-110 78-163 (352)
316 PRK13768 GTPase; Provisional 96.2 0.0026 5.7E-08 43.3 1.5 49 40-88 98-175 (253)
317 TIGR00157 ribosome small subun 96.1 0.0051 1.1E-07 41.8 2.6 15 1-15 130-144 (245)
318 KOG0461|consensus 96.1 0.037 7.9E-07 39.9 6.7 49 2-51 18-82 (522)
319 PF03193 DUF258: Protein of un 96.0 0.0056 1.2E-07 39.1 2.3 15 1-15 45-59 (161)
320 COG0480 FusA Translation elong 95.9 0.017 3.6E-07 44.8 4.9 51 38-88 75-141 (697)
321 PRK12289 GTPase RsgA; Reviewed 95.9 0.016 3.6E-07 41.4 4.5 15 1-15 182-196 (352)
322 cd01851 GBP Guanylate-binding 95.7 0.024 5.3E-07 37.9 4.7 52 1-52 17-73 (224)
323 PF05783 DLIC: Dynein light in 95.7 0.041 9E-07 40.9 6.0 57 1-60 35-94 (472)
324 KOG3905|consensus 95.7 0.038 8.2E-07 39.5 5.5 51 1-54 62-115 (473)
325 PRK13796 GTPase YqeH; Provisio 95.6 0.012 2.6E-07 42.3 3.0 14 1-14 170-183 (365)
326 cd01849 YlqF_related_GTPase Yl 95.6 0.046 1E-06 34.2 5.3 44 1-48 110-154 (155)
327 TIGR00993 3a0901s04IAP86 chlor 95.5 0.031 6.8E-07 43.3 5.0 49 1-52 128-179 (763)
328 PRK00098 GTPase RsgA; Reviewed 95.5 0.015 3.3E-07 40.5 3.1 35 76-110 112-155 (298)
329 PRK00098 GTPase RsgA; Reviewed 95.5 0.016 3.5E-07 40.4 3.1 15 1-15 174-188 (298)
330 KOG2655|consensus 95.4 0.045 9.7E-07 39.3 5.2 51 1-51 31-91 (366)
331 COG5019 CDC3 Septin family pro 95.4 0.059 1.3E-06 38.7 5.7 52 1-52 33-95 (373)
332 PRK09866 hypothetical protein; 95.2 0.021 4.6E-07 44.0 3.2 90 21-110 212-341 (741)
333 COG1162 Predicted GTPases [Gen 95.0 0.016 3.4E-07 40.6 1.9 14 1-14 174-187 (301)
334 COG1618 Predicted nucleotide k 94.9 0.072 1.6E-06 34.3 4.4 45 1-47 15-59 (179)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 94.8 0.039 8.5E-07 34.0 3.1 35 75-109 42-84 (141)
336 KOG1491|consensus 94.7 0.18 4E-06 36.1 6.5 88 1-89 30-141 (391)
337 KOG3859|consensus 94.4 0.091 2E-06 36.8 4.4 49 1-49 52-105 (406)
338 PRK12288 GTPase RsgA; Reviewed 94.3 0.05 1.1E-06 38.9 3.1 36 75-110 150-196 (347)
339 TIGR00101 ureG urease accessor 94.3 0.02 4.4E-07 37.6 1.0 33 78-110 140-184 (199)
340 KOG0467|consensus 94.2 0.059 1.3E-06 42.1 3.4 85 3-87 21-136 (887)
341 cd01854 YjeQ_engC YjeQ/EngC. 94.2 0.043 9.3E-07 38.1 2.5 35 76-110 110-152 (287)
342 KOG1547|consensus 93.9 0.099 2.1E-06 35.9 3.7 51 1-51 56-116 (336)
343 COG0012 Predicted GTPase, prob 93.8 0.14 3E-06 37.0 4.5 94 1-94 12-129 (372)
344 PF03266 NTPase_1: NTPase; In 93.6 0.15 3.3E-06 32.7 4.1 47 1-49 9-56 (168)
345 TIGR02836 spore_IV_A stage IV 93.3 0.16 3.4E-06 37.6 4.2 14 1-14 27-40 (492)
346 PF13207 AAA_17: AAA domain; P 92.9 0.074 1.6E-06 31.5 1.8 14 1-14 9-22 (121)
347 KOG2486|consensus 92.9 0.17 3.7E-06 35.3 3.7 60 1-62 146-216 (320)
348 PF13173 AAA_14: AAA domain 92.8 0.068 1.5E-06 32.4 1.5 16 1-16 12-27 (128)
349 KOG0410|consensus 92.6 0.093 2E-06 37.5 2.1 32 78-109 297-328 (410)
350 PF13238 AAA_18: AAA domain; P 92.5 0.09 1.9E-06 31.2 1.8 14 1-14 8-21 (129)
351 PF02492 cobW: CobW/HypB/UreG, 92.3 0.091 2E-06 33.8 1.7 13 1-13 10-22 (178)
352 PF00350 Dynamin_N: Dynamin fa 92.3 0.16 3.5E-06 31.7 2.8 15 1-15 8-22 (168)
353 cd01858 NGP_1 NGP-1. Autoanti 91.9 0.18 3.8E-06 31.6 2.6 35 76-110 40-83 (157)
354 PF13401 AAA_22: AAA domain; P 91.6 0.13 2.9E-06 30.8 1.8 14 1-14 14-27 (131)
355 PF13671 AAA_33: AAA domain; P 91.5 0.13 2.9E-06 31.3 1.7 13 1-13 9-21 (143)
356 COG3276 SelB Selenocysteine-sp 91.3 0.34 7.4E-06 35.7 3.9 103 3-109 12-149 (447)
357 PF02367 UPF0079: Uncharacteri 91.3 0.54 1.2E-05 28.7 4.2 73 1-75 25-102 (123)
358 cd01856 YlqF YlqF. Proteins o 91.2 0.2 4.2E-06 31.9 2.4 36 75-110 46-89 (171)
359 PF13191 AAA_16: AAA ATPase do 91.1 0.15 3.3E-06 32.2 1.8 13 1-13 34-46 (185)
360 PF01637 Arch_ATPase: Archaeal 90.5 0.18 4E-06 32.9 1.8 15 1-15 30-44 (234)
361 COG1428 Deoxynucleoside kinase 90.5 0.18 3.8E-06 33.7 1.6 14 1-14 14-27 (216)
362 cd02019 NK Nucleoside/nucleoti 90.3 0.22 4.9E-06 26.9 1.7 14 1-14 9-22 (69)
363 KOG0099|consensus 89.9 0.16 3.5E-06 35.3 1.1 34 38-71 201-234 (379)
364 PRK08233 hypothetical protein; 89.7 0.23 5E-06 31.5 1.7 14 1-14 13-26 (182)
365 KOG3887|consensus 89.6 0.094 2E-06 36.1 -0.1 67 2-71 38-110 (347)
366 KOG1486|consensus 89.6 2.5 5.4E-05 29.5 6.6 44 1-49 72-119 (364)
367 PF05729 NACHT: NACHT domain 89.6 0.24 5.1E-06 30.6 1.6 14 1-14 10-23 (166)
368 PF13555 AAA_29: P-loop contai 89.5 0.28 6.2E-06 26.3 1.7 12 1-12 33-44 (62)
369 TIGR00073 hypB hydrogenase acc 89.4 0.18 3.9E-06 33.1 1.1 34 77-110 150-195 (207)
370 PF00004 AAA: ATPase family as 89.3 0.28 6.1E-06 29.2 1.8 14 1-14 8-21 (132)
371 smart00382 AAA ATPases associa 89.0 0.29 6.2E-06 28.8 1.7 17 1-17 12-28 (148)
372 PF07728 AAA_5: AAA domain (dy 88.8 0.31 6.8E-06 29.6 1.7 14 1-14 9-22 (139)
373 PF13521 AAA_28: AAA domain; P 88.8 0.28 6E-06 30.8 1.6 14 1-14 9-22 (163)
374 PRK11537 putative GTP-binding 88.7 0.29 6.3E-06 34.6 1.7 14 1-14 14-27 (318)
375 PF00910 RNA_helicase: RNA hel 88.5 0.34 7.4E-06 28.5 1.7 14 1-14 8-21 (107)
376 cd02023 UMPK Uridine monophosp 88.2 0.34 7.4E-06 31.4 1.7 14 1-14 9-22 (198)
377 cd00009 AAA The AAA+ (ATPases 88.1 0.36 7.8E-06 28.7 1.7 15 1-15 29-43 (151)
378 TIGR00150 HI0065_YjeE ATPase, 88.1 0.37 7.9E-06 29.9 1.7 14 1-14 32-45 (133)
379 TIGR00073 hypB hydrogenase acc 88.1 0.35 7.5E-06 31.8 1.7 14 1-14 32-45 (207)
380 PRK07261 topology modulation p 88.0 0.36 7.8E-06 30.9 1.7 13 1-13 10-22 (171)
381 TIGR03596 GTPase_YlqF ribosome 88.0 0.52 1.1E-05 32.5 2.6 36 75-110 48-91 (276)
382 KOG1144|consensus 87.8 0.54 1.2E-05 37.2 2.8 86 2-87 486-604 (1064)
383 cd01673 dNK Deoxyribonucleosid 87.8 0.37 8E-06 31.1 1.7 13 1-13 9-21 (193)
384 cd02030 NDUO42 NADH:Ubiquinone 87.8 0.37 8E-06 32.0 1.7 13 1-13 9-21 (219)
385 COG0194 Gmk Guanylate kinase [ 87.6 0.41 9E-06 31.4 1.8 15 1-15 14-28 (191)
386 PRK08118 topology modulation p 87.5 0.4 8.7E-06 30.6 1.7 14 1-14 11-24 (167)
387 TIGR02322 phosphon_PhnN phosph 87.4 0.41 8.8E-06 30.5 1.7 14 1-14 11-24 (179)
388 PF00005 ABC_tran: ABC transpo 87.3 0.37 8E-06 29.1 1.4 13 1-13 21-33 (137)
389 cd03112 CobW_like The function 87.3 0.44 9.5E-06 30.1 1.8 15 1-15 10-24 (158)
390 PF03205 MobB: Molybdopterin g 87.3 0.45 9.7E-06 29.6 1.8 14 1-14 10-23 (140)
391 PRK10078 ribose 1,5-bisphospho 87.0 0.42 9E-06 30.8 1.6 14 1-14 12-25 (186)
392 COG0523 Putative GTPases (G3E 87.0 0.44 9.5E-06 33.9 1.8 16 1-16 11-26 (323)
393 KOG1424|consensus 87.0 0.68 1.5E-05 34.9 2.8 45 1-49 324-369 (562)
394 PF00485 PRK: Phosphoribulokin 87.0 0.45 9.9E-06 30.9 1.8 13 1-13 9-21 (194)
395 cd02025 PanK Pantothenate kina 87.0 0.44 9.6E-06 31.8 1.7 13 1-13 9-21 (220)
396 cd01672 TMPK Thymidine monopho 87.0 0.44 9.6E-06 30.4 1.7 13 1-13 10-22 (200)
397 cd01849 YlqF_related_GTPase Yl 86.6 0.69 1.5E-05 28.8 2.4 37 74-110 28-73 (155)
398 TIGR00235 udk uridine kinase. 86.6 0.48 1E-05 31.1 1.7 13 1-13 16-28 (207)
399 COG0378 HypB Ni2+-binding GTPa 86.5 0.5 1.1E-05 31.3 1.8 33 78-110 145-189 (202)
400 TIGR01313 therm_gnt_kin carboh 86.5 0.5 1.1E-05 29.6 1.7 14 1-14 8-21 (163)
401 PRK10751 molybdopterin-guanine 86.4 0.47 1E-05 30.7 1.6 13 1-13 16-28 (173)
402 PF03029 ATP_bind_1: Conserved 86.4 0.5 1.1E-05 32.0 1.8 50 40-89 92-170 (238)
403 cd02021 GntK Gluconate kinase 86.4 0.51 1.1E-05 29.1 1.7 14 1-14 9-22 (150)
404 PF07693 KAP_NTPase: KAP famil 86.2 0.48 1E-05 33.0 1.7 13 1-13 30-42 (325)
405 PRK06762 hypothetical protein; 86.2 0.53 1.1E-05 29.6 1.7 14 1-14 12-25 (166)
406 PRK10463 hydrogenase nickel in 86.0 0.52 1.1E-05 33.0 1.7 33 78-110 233-277 (290)
407 PRK06217 hypothetical protein; 86.0 0.54 1.2E-05 30.2 1.7 14 1-14 11-24 (183)
408 TIGR00101 ureG urease accessor 86.0 0.54 1.2E-05 30.9 1.7 14 1-14 11-24 (199)
409 TIGR02475 CobW cobalamin biosy 85.9 0.52 1.1E-05 33.7 1.8 14 1-14 14-27 (341)
410 TIGR03015 pepcterm_ATPase puta 85.9 0.53 1.1E-05 31.8 1.7 14 1-14 53-66 (269)
411 TIGR01360 aden_kin_iso1 adenyl 85.9 0.53 1.1E-05 30.0 1.6 13 1-13 13-25 (188)
412 cd00071 GMPK Guanosine monopho 85.9 0.56 1.2E-05 28.9 1.7 14 1-14 9-22 (137)
413 PRK10646 ADP-binding protein; 85.8 1.8 3.9E-05 27.5 4.0 14 1-14 38-51 (153)
414 TIGR03263 guanyl_kin guanylate 85.7 0.54 1.2E-05 29.9 1.6 14 1-14 11-24 (180)
415 cd03116 MobB Molybdenum is an 85.7 0.58 1.3E-05 29.7 1.7 13 1-13 11-23 (159)
416 PRK06547 hypothetical protein; 85.5 0.59 1.3E-05 30.1 1.7 14 1-14 25-38 (172)
417 PRK11545 gntK gluconate kinase 85.3 0.61 1.3E-05 29.6 1.7 14 1-14 5-18 (163)
418 cd01120 RecA-like_NTPases RecA 85.2 0.62 1.4E-05 28.5 1.7 14 1-14 9-22 (165)
419 PF02223 Thymidylate_kin: Thym 85.2 0.63 1.4E-05 29.8 1.8 13 1-13 6-18 (186)
420 PF09547 Spore_IV_A: Stage IV 85.2 2.7 5.8E-05 31.4 5.0 47 2-48 28-100 (492)
421 PRK05480 uridine/cytidine kina 85.1 0.62 1.3E-05 30.5 1.7 13 1-13 16-28 (209)
422 PRK13975 thymidylate kinase; P 85.1 0.63 1.4E-05 30.0 1.7 13 1-13 12-24 (196)
423 PRK13796 GTPase YqeH; Provisio 85.1 0.54 1.2E-05 33.9 1.5 38 74-111 95-148 (365)
424 cd00227 CPT Chloramphenicol (C 85.0 0.65 1.4E-05 29.6 1.7 14 1-14 12-25 (175)
425 PF03029 ATP_bind_1: Conserved 84.8 0.47 1E-05 32.2 1.1 13 1-13 6-18 (238)
426 cd02028 UMPK_like Uridine mono 84.7 0.67 1.5E-05 29.9 1.7 14 1-14 9-22 (179)
427 TIGR00176 mobB molybdopterin-g 84.4 0.73 1.6E-05 29.1 1.7 13 1-13 9-21 (155)
428 COG0802 Predicted ATPase or ki 84.3 2.5 5.5E-05 26.7 4.1 14 1-14 35-48 (149)
429 COG1120 FepC ABC-type cobalami 84.3 0.65 1.4E-05 32.0 1.6 13 1-13 38-50 (258)
430 cd01124 KaiC KaiC is a circadi 84.3 0.7 1.5E-05 29.4 1.7 14 1-14 9-22 (187)
431 PRK03839 putative kinase; Prov 84.3 0.72 1.6E-05 29.4 1.7 14 1-14 10-23 (180)
432 PRK00698 tmk thymidylate kinas 84.2 0.72 1.6E-05 29.8 1.7 13 1-13 13-25 (205)
433 PRK06696 uridine kinase; Valid 83.8 0.75 1.6E-05 30.6 1.7 13 1-13 32-44 (223)
434 PF05879 RHD3: Root hair defec 83.8 0.78 1.7E-05 36.2 2.0 49 1-49 5-58 (742)
435 PRK14738 gmk guanylate kinase; 83.8 0.75 1.6E-05 30.3 1.7 14 1-14 23-36 (206)
436 PRK04040 adenylate kinase; Pro 83.7 0.78 1.7E-05 29.9 1.7 14 1-14 12-25 (188)
437 COG1763 MobB Molybdopterin-gua 83.7 0.69 1.5E-05 29.6 1.4 13 1-13 12-24 (161)
438 cd03238 ABC_UvrA The excision 83.5 0.63 1.4E-05 30.0 1.2 12 1-12 31-42 (176)
439 KOG4235|consensus 83.2 0.93 2E-05 30.3 1.9 19 1-19 32-50 (244)
440 PRK14493 putative bifunctional 83.2 0.8 1.7E-05 31.8 1.7 13 1-13 11-23 (274)
441 PF00931 NB-ARC: NB-ARC domain 83.2 0.78 1.7E-05 31.3 1.6 14 1-14 29-42 (287)
442 PRK09563 rbgA GTPase YlqF; Rev 83.0 1.2 2.7E-05 30.8 2.6 36 75-110 51-94 (287)
443 PRK07667 uridine kinase; Provi 82.9 0.89 1.9E-05 29.6 1.7 13 1-13 27-39 (193)
444 PRK09270 nucleoside triphospha 82.9 0.87 1.9E-05 30.4 1.7 13 1-13 43-55 (229)
445 PTZ00301 uridine kinase; Provi 82.9 0.87 1.9E-05 30.3 1.7 12 1-12 13-24 (210)
446 TIGR00041 DTMP_kinase thymidyl 82.9 0.88 1.9E-05 29.3 1.7 13 1-13 13-25 (195)
447 COG1116 TauB ABC-type nitrate/ 82.8 0.82 1.8E-05 31.3 1.6 13 1-13 39-51 (248)
448 PF01443 Viral_helicase1: Vira 82.8 0.83 1.8E-05 30.1 1.6 14 1-14 8-21 (234)
449 COG0563 Adk Adenylate kinase a 82.8 0.8 1.7E-05 29.7 1.5 14 1-14 10-23 (178)
450 PRK00300 gmk guanylate kinase; 82.7 0.89 1.9E-05 29.5 1.7 14 1-14 15-28 (205)
451 PRK05541 adenylylsulfate kinas 82.6 0.93 2E-05 28.8 1.7 13 1-13 17-29 (176)
452 COG3845 ABC-type uncharacteriz 82.5 1.9 4.1E-05 32.4 3.4 23 1-28 40-62 (501)
453 PRK07933 thymidylate kinase; V 82.4 0.93 2E-05 30.1 1.7 13 1-13 10-22 (213)
454 cd01983 Fer4_NifH The Fer4_Nif 82.4 1 2.2E-05 24.9 1.7 56 1-69 9-65 (99)
455 cd00820 PEPCK_HprK Phosphoenol 82.4 0.89 1.9E-05 27.1 1.5 12 1-12 25-36 (107)
456 cd02024 NRK1 Nicotinamide ribo 82.4 0.95 2.1E-05 29.6 1.7 14 1-14 9-22 (187)
457 cd03114 ArgK-like The function 82.3 0.98 2.1E-05 28.2 1.7 13 1-13 9-21 (148)
458 cd03226 ABC_cobalt_CbiO_domain 82.3 0.88 1.9E-05 29.7 1.5 14 1-14 36-49 (205)
459 cd03255 ABC_MJ0796_Lo1CDE_FtsE 82.2 0.9 2E-05 29.8 1.6 13 1-13 40-52 (218)
460 PRK14737 gmk guanylate kinase; 82.1 0.99 2.1E-05 29.4 1.7 14 1-14 14-27 (186)
461 PF07726 AAA_3: ATPase family 81.9 0.81 1.7E-05 28.3 1.2 13 1-13 9-21 (131)
462 cd03225 ABC_cobalt_CbiO_domain 81.9 0.94 2E-05 29.6 1.6 13 1-13 37-49 (211)
463 cd03269 ABC_putative_ATPase Th 81.9 0.95 2.1E-05 29.6 1.6 14 1-14 36-49 (210)
464 COG3842 PotA ABC-type spermidi 81.8 0.94 2E-05 32.6 1.6 14 1-14 41-54 (352)
465 cd02027 APSK Adenosine 5'-phos 81.8 1.1 2.3E-05 28.0 1.7 14 1-14 9-22 (149)
466 COG1136 SalX ABC-type antimicr 81.7 0.8 1.7E-05 30.9 1.2 14 1-14 41-54 (226)
467 PF06745 KaiC: KaiC; InterPro 81.7 1 2.2E-05 29.8 1.7 14 1-14 29-42 (226)
468 TIGR01166 cbiO cobalt transpor 81.6 0.97 2.1E-05 29.1 1.5 13 1-13 28-40 (190)
469 COG0378 HypB Ni2+-binding GTPa 81.4 1.1 2.4E-05 29.7 1.7 14 1-14 23-36 (202)
470 COG1129 MglA ABC-type sugar tr 81.4 1.9 4.1E-05 32.6 3.1 20 1-25 44-63 (500)
471 PF03308 ArgK: ArgK protein; 81.3 1.1 2.3E-05 31.0 1.7 33 78-110 170-218 (266)
472 cd01394 radB RadB. The archaea 81.3 1 2.3E-05 29.6 1.6 14 1-14 29-42 (218)
473 TIGR00960 3a0501s02 Type II (G 81.1 1 2.2E-05 29.6 1.5 13 1-13 39-51 (216)
474 PRK13695 putative NTPase; Prov 81.0 1.2 2.5E-05 28.4 1.7 13 1-13 10-22 (174)
475 cd02022 DPCK Dephospho-coenzym 81.0 1.1 2.5E-05 28.7 1.7 13 1-13 9-21 (179)
476 cd03293 ABC_NrtD_SsuB_transpor 81.0 1 2.3E-05 29.6 1.6 13 1-13 40-52 (220)
477 cd03264 ABC_drug_resistance_li 80.9 1.1 2.3E-05 29.4 1.6 13 1-13 35-47 (211)
478 PHA00729 NTP-binding motif con 80.8 1.2 2.5E-05 30.2 1.7 14 1-14 27-40 (226)
479 PF08303 tRNA_lig_kinase: tRNA 80.8 1.2 2.6E-05 28.7 1.7 12 1-12 9-20 (168)
480 PF01202 SKI: Shikimate kinase 80.7 1.2 2.7E-05 27.9 1.8 13 1-13 2-14 (158)
481 cd03222 ABC_RNaseL_inhibitor T 80.7 1.1 2.3E-05 29.0 1.5 13 1-13 35-47 (177)
482 cd02026 PRK Phosphoribulokinas 80.7 1.2 2.5E-05 30.9 1.7 13 1-13 9-21 (273)
483 cd03292 ABC_FtsE_transporter F 80.7 1.1 2.4E-05 29.3 1.6 13 1-13 37-49 (214)
484 COG1936 Predicted nucleotide k 80.6 1.2 2.5E-05 29.1 1.6 12 1-12 10-21 (180)
485 cd03261 ABC_Org_Solvent_Resist 80.6 1.1 2.4E-05 29.9 1.6 13 1-13 36-48 (235)
486 cd03301 ABC_MalK_N The N-termi 80.5 1.1 2.5E-05 29.3 1.6 14 1-14 36-49 (213)
487 TIGR03608 L_ocin_972_ABC putat 80.5 1.1 2.5E-05 29.0 1.6 14 1-14 34-47 (206)
488 cd03265 ABC_DrrA DrrA is the A 80.4 1.1 2.5E-05 29.5 1.6 13 1-13 36-48 (220)
489 cd03262 ABC_HisP_GlnQ_permease 80.4 1.1 2.5E-05 29.2 1.6 14 1-14 36-49 (213)
490 cd03229 ABC_Class3 This class 80.4 1.2 2.5E-05 28.5 1.6 13 1-13 36-48 (178)
491 cd03266 ABC_NatA_sodium_export 80.3 1.1 2.5E-05 29.4 1.6 13 1-13 41-53 (218)
492 cd03258 ABC_MetN_methionine_tr 80.3 1.1 2.5E-05 29.7 1.6 14 1-14 41-54 (233)
493 TIGR02315 ABC_phnC phosphonate 80.2 1.1 2.5E-05 29.9 1.6 13 1-13 38-50 (243)
494 cd03259 ABC_Carb_Solutes_like 80.2 1.2 2.5E-05 29.2 1.6 13 1-13 36-48 (213)
495 TIGR02237 recomb_radB DNA repa 80.1 1.2 2.7E-05 29.0 1.7 13 1-13 22-34 (209)
496 PF12775 AAA_7: P-loop contain 80.1 1.4 3.1E-05 30.4 2.0 15 1-15 43-57 (272)
497 cd01131 PilT Pilus retraction 80.0 1.3 2.8E-05 29.0 1.7 14 1-14 11-24 (198)
498 COG1117 PstB ABC-type phosphat 80.0 1.1 2.5E-05 30.4 1.4 11 1-11 43-53 (253)
499 KOG3347|consensus 79.8 1.1 2.5E-05 28.6 1.4 13 1-13 17-29 (176)
500 TIGR02673 FtsE cell division A 79.8 1.2 2.6E-05 29.1 1.6 13 1-13 38-50 (214)
No 1
>KOG0092|consensus
Probab=100.00 E-value=6.2e-37 Score=195.41 Aligned_cols=111 Identities=28% Similarity=0.468 Sum_probs=97.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||..++|.+...||||..| .+.+.+++..++|+||||+|||+|.++.|.|||+|++.+++++
T Consensus 15 ~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~ 94 (200)
T KOG0092|consen 15 GVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFE 94 (200)
T ss_pred CCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHH
Confidence 7999999999999999999999999998 5899999999999999999999999999999999999878776
Q ss_pred -----------hcC-CccEEecccccchhh--hhchh------c--cCceEEcccccccCCC
Q psy13093 72 -----------HAG-HPVRFPRGRKIRIMQ--MIGFR------D--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~-~~~~~~~gnk~dl~~--~~~~~------~--~~~~~e~SAk~~~n~~ 111 (111)
..+ +..+.++|||+||.+ ++... + ++.|+|||||+|.|++
T Consensus 95 ~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 95 KAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHH
Confidence 333 344779999999943 33333 3 8999999999999974
No 2
>KOG0084|consensus
Probab=100.00 E-value=6.3e-37 Score=196.00 Aligned_cols=110 Identities=29% Similarity=0.498 Sum_probs=98.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||+|+.||..+.|.+.|..|+|++|. +.+.++++.++||||||+|||||+++..+|||+|||++++++
T Consensus 19 ~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~ 98 (205)
T KOG0084|consen 19 GVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFN 98 (205)
T ss_pred CcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhh
Confidence 79999999999999999999999999996 899999999999999999999999999999999999988887
Q ss_pred -----------hcCCc-cEEecccccchhh--------hhchhc--cCc-eEEcccccccCC
Q psy13093 72 -----------HAGHP-VRFPRGRKIRIMQ--------MIGFRD--RLL-WGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~-~~~~~gnk~dl~~--------~~~~~~--~~~-~~e~SAk~~~n~ 110 (111)
..... +.+++|||+|+.+ +..++. +++ |+|||||.+.||
T Consensus 99 ~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 99 NVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred hHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 33333 6999999999943 334444 777 999999999986
No 3
>KOG0094|consensus
Probab=100.00 E-value=3e-36 Score=192.83 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=97.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
+||||||+.||..+.|..+|.+|||.+|. +++.+.+..+.||+|||+|||||+++.|.|||++++.+.+++
T Consensus 32 sVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe 111 (221)
T KOG0094|consen 32 SVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFE 111 (221)
T ss_pred ccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHH
Confidence 69999999999999999999999999995 899999999999999999999999999999999998777665
Q ss_pred -------------hcCCccEEecccccchhh--hhchhc--------cCceEEcccccccCCC
Q psy13093 72 -------------HAGHPVRFPRGRKIRIMQ--MIGFRD--------RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl~~--~~~~~~--------~~~~~e~SAk~~~n~~ 111 (111)
..++..++++|||.||.. ++...+ +..|.|+|||.|+|+|
T Consensus 112 ~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 112 NTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVK 174 (221)
T ss_pred HHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHH
Confidence 222355899999999932 333333 7889999999999986
No 4
>KOG0080|consensus
Probab=100.00 E-value=9e-35 Score=181.39 Aligned_cols=110 Identities=27% Similarity=0.420 Sum_probs=97.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||+.+.|.+....|||.+|. +.+.++++.+++.||||+|||+|+.+.|+|||+|+++|++++
T Consensus 21 GVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~ 100 (209)
T KOG0080|consen 21 GVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFV 100 (209)
T ss_pred CccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHH
Confidence 89999999999999999998888999996 899999999999999999999999999999999999999887
Q ss_pred -------------hcCCccEEecccccchh--hhhchhc--------cCceEEcccccccCC
Q psy13093 72 -------------HAGHPVRFPRGRKIRIM--QMIGFRD--------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl~--~~~~~~~--------~~~~~e~SAk~~~n~ 110 (111)
..++...+++|||+|.+ +.++-.+ +|.|.|||||+.+||
T Consensus 101 kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 101 KLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred hHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 33334478999999996 4333333 899999999999886
No 5
>KOG0098|consensus
Probab=100.00 E-value=1.5e-34 Score=183.89 Aligned_cols=110 Identities=26% Similarity=0.373 Sum_probs=98.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||+|+.||++..|.+-+..|+|.+| .+.+++++++++|+||||+|||+|+++++.|||+|.+.+++++
T Consensus 16 gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~ 95 (216)
T KOG0098|consen 16 GVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFN 95 (216)
T ss_pred CccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHH
Confidence 7999999999999999999999999999 4899999999999999999999999999999999999888876
Q ss_pred ------------hcCCccEEecccccchhh--hhchhc--------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MIGFRD--------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~~~~~--------~~~~~e~SAk~~~n~ 110 (111)
...+..++++|||+||.. .++..+ ++.|+|||||+++|+
T Consensus 96 hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~V 156 (216)
T KOG0098|consen 96 HLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENV 156 (216)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhH
Confidence 346777999999999943 333222 899999999999987
No 6
>KOG0078|consensus
Probab=100.00 E-value=4.3e-34 Score=184.80 Aligned_cols=110 Identities=27% Similarity=0.463 Sum_probs=98.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||+|+.||.++.|...+..|+|.+|. +.+.++++.+.+|+|||+||++|+.+.+.|||+|++++++++
T Consensus 22 ~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfe 101 (207)
T KOG0078|consen 22 GVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFE 101 (207)
T ss_pred CCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHH
Confidence 79999999999999999999999999996 899999999999999999999999999999999999888886
Q ss_pred -----------hcC-CccEEecccccchhh--------hhchhc--cCceEEcccccccCC
Q psy13093 72 -----------HAG-HPVRFPRGRKIRIMQ--------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~-~~~~~~~gnk~dl~~--------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
+.+ +.+.+++|||+|++. +..++. ++.|+|||||+|.|+
T Consensus 102 ni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 102 NIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred HHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 444 455999999999954 223333 899999999999996
No 7
>KOG0394|consensus
Probab=100.00 E-value=1.5e-33 Score=178.97 Aligned_cols=110 Identities=25% Similarity=0.363 Sum_probs=95.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++||.+.+|..+|..|||.+| .|.+.++++.+.|+||||+|||||+++.-.+||+||+..++++
T Consensus 19 GVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe 98 (210)
T KOG0394|consen 19 GVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFE 98 (210)
T ss_pred CccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhc
Confidence 8999999999999999999999999999 5899999999999999999999999999999999999766654
Q ss_pred ---------------hcCC-ccEEecccccchh----hhhchhc---------cCceEEcccccccCC
Q psy13093 72 ---------------HAGH-PVRFPRGRKIRIM----QMIGFRD---------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------------~~~~-~~~~~~gnk~dl~----~~~~~~~---------~~~~~e~SAk~~~n~ 110 (111)
.-|. .+++++|||+|+. ++++.+. +.+|||||||.+.||
T Consensus 99 ~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 99 NLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred cHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 1112 2489999999993 3444433 899999999999996
No 8
>KOG0079|consensus
Probab=99.98 E-value=4.1e-33 Score=172.01 Aligned_cols=111 Identities=25% Similarity=0.404 Sum_probs=98.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||..+.|...|..|+|.+|. +++.++|..++|+|||++|||+|+.|...||+++++++.+++
T Consensus 18 gVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~ 97 (198)
T KOG0079|consen 18 GVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFN 97 (198)
T ss_pred cccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhH
Confidence 79999999999999999999999999995 899999999999999999999999999999999999988886
Q ss_pred -----------hcCCccEEecccccchhh--------hhchhc--cCceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQ--------MIGFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~--------~~~~~~--~~~~~e~SAk~~~n~~ 111 (111)
..+..+.+++|||.|..+ +..++. ++.+||||||++.|+.
T Consensus 98 Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 98 NVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVE 158 (198)
T ss_pred hHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccch
Confidence 455556899999999943 333333 7789999999999974
No 9
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=7.6e-31 Score=169.94 Aligned_cols=110 Identities=32% Similarity=0.544 Sum_probs=94.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|..+|.||++..|.+.+.+++..+.++||||+|+++|+.+++.||+++++++++++
T Consensus 15 ~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~ 94 (182)
T cd04172 15 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDS 94 (182)
T ss_pred CCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999888888899999999999999999999999999999999766665
Q ss_pred -----------hcCCccEEecccccchhhh--------------hchhc--------cC-ceEEcccccccC-C
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGFRD--------RL-LWGSKQAREEKN-E 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~~~--------~~-~~~e~SAk~~~n-~ 110 (111)
..++.+++++|||+||... +...+ ++ .|+|||||+|.| +
T Consensus 95 ~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v 168 (182)
T cd04172 95 VLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSV 168 (182)
T ss_pred HHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCH
Confidence 2345679999999999531 22222 54 899999999998 5
No 10
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=1.2e-30 Score=168.29 Aligned_cols=111 Identities=49% Similarity=0.729 Sum_probs=94.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|..+|.||++..+.+.+.+++..++++||||+|+++|+.+++.||++|++++++++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~ 90 (176)
T cd04133 11 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYEN 90 (176)
T ss_pred CCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHH
Confidence 79999999999999999999999999888778889999999999999999999999999999999766654
Q ss_pred -----------hcCCccEEecccccchhhh------------hchhc--------cC-ceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM------------IGFRD--------RL-LWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~------------~~~~~--------~~-~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||+||... +...+ ++ .|+|||||+|.|++
T Consensus 91 ~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~ 162 (176)
T cd04133 91 VLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVK 162 (176)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHH
Confidence 2345679999999999432 22221 55 59999999999973
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=1.6e-30 Score=170.81 Aligned_cols=110 Identities=24% Similarity=0.328 Sum_probs=94.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||..+.|.++|.||++.+|. +.+.+++..+.++|||++|+++|+.+++.||++|++++++++
T Consensus 10 gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~ 89 (202)
T cd04120 10 GVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFD 89 (202)
T ss_pred CCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998875 678899999999999999999999999999999999877765
Q ss_pred ------------hcCCccEEecccccchhh--------hhchhc---cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--------MIGFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--------~~~~~~---~~~~~e~SAk~~~n~ 110 (111)
...+.+++++|||+|+.. +..++. ++.|+|||||+|.|+
T Consensus 90 ~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV 151 (202)
T cd04120 90 DLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 123456999999999942 112221 577999999999986
No 12
>KOG0095|consensus
Probab=99.97 E-value=2.8e-31 Score=164.37 Aligned_cols=110 Identities=30% Similarity=0.453 Sum_probs=96.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||+|+.||.++-|++....|+|.+| .+++.+++..++|+||||+|||+|+++..+|||.|++++++++
T Consensus 17 gvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfd 96 (213)
T KOG0095|consen 17 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFD 96 (213)
T ss_pred CcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchh
Confidence 7999999999999999999999999999 5899999999999999999999999999999999999988887
Q ss_pred -----------hcCCcc-EEecccccchhh--------hhchhc--cCceEEcccccccCC
Q psy13093 72 -----------HAGHPV-RFPRGRKIRIMQ--------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~-~~~~gnk~dl~~--------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+.+ .+++|||+|+.. ..++++ ++-|.|||||+.+||
T Consensus 97 clpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nv 157 (213)
T KOG0095|consen 97 CLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNV 157 (213)
T ss_pred hhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhH
Confidence 333333 789999999943 222333 778899999999986
No 13
>KOG0093|consensus
Probab=99.97 E-value=3.5e-31 Score=163.23 Aligned_cols=111 Identities=26% Similarity=0.369 Sum_probs=98.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
.|||||++.||+++.|...+..|+|.+|. |++.-..+.+++|||||+|||+|+.+...|||+|.++++.++
T Consensus 31 svGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~ 110 (193)
T KOG0093|consen 31 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 110 (193)
T ss_pred CccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHH
Confidence 48999999999999999999999999996 766667788999999999999999999999999999888776
Q ss_pred ------------hcCCccEEecccccchh--------hhhchhc--cCceEEcccccccCCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIM--------QMIGFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~--------~~~~~~~--~~~~~e~SAk~~~n~~ 111 (111)
.|.+..++++|||||++ +...+++ ++.|||+|||+|-|||
T Consensus 111 svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk 172 (193)
T KOG0093|consen 111 SVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK 172 (193)
T ss_pred HHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence 78888899999999993 2344444 7788999999999986
No 14
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=3.7e-30 Score=167.62 Aligned_cols=111 Identities=50% Similarity=0.747 Sum_probs=94.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|.++|.||++..|.+.+.+++..+.++||||+||++|+.+++.||++||+++++++
T Consensus 13 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~ 92 (191)
T cd01875 13 AVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYEN 92 (191)
T ss_pred CCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999887777889999999999999999999999999999999766654
Q ss_pred -----------hcCCccEEecccccchhhhhc--------------------hhc--c-CceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIG--------------------FRD--R-LLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~--------------------~~~--~-~~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||+||..... ++. + +.|+||||++|+|++
T Consensus 93 ~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~ 166 (191)
T cd01875 93 VRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVK 166 (191)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHH
Confidence 234667999999999954311 111 4 589999999999873
No 15
>KOG0086|consensus
Probab=99.97 E-value=7.1e-31 Score=163.05 Aligned_cols=111 Identities=25% Similarity=0.350 Sum_probs=96.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|.|||+|++||+.++|......|+|.+|. +.+.+.++.++|+||||+|||+|++..+.|||+|.+.+++++
T Consensus 19 GtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrdsfn 98 (214)
T KOG0086|consen 19 GTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFN 98 (214)
T ss_pred CCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHH
Confidence 78999999999999999999999999995 788899999999999999999999999999999999767765
Q ss_pred ------------hcCCccEEecccccchhh--hhchhc--------cCceEEcccccccCCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MIGFRD--------RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~~~~~--------~~~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||-||.. .+.+.+ .+.|.||||++|+||.
T Consensus 99 aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 99 ALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 334445899999999943 444444 5678999999999973
No 16
>KOG0087|consensus
Probab=99.97 E-value=2.1e-30 Score=167.63 Aligned_cols=111 Identities=31% Similarity=0.391 Sum_probs=97.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||-|+.||..+.|..+..+|+|.+|. ..+.++++.++.+||||+|||||+.+...|||+|.|.+++++
T Consensus 24 ~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfe 103 (222)
T KOG0087|consen 24 AVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFE 103 (222)
T ss_pred ccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHH
Confidence 79999999999999999999999999995 789999999999999999999999999999999999777776
Q ss_pred -----------hc-CCccEEecccccchhh--------hhchhc--cCceEEcccccccCCC
Q psy13093 72 -----------HA-GHPVRFPRGRKIRIMQ--------MIGFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~-~~~~~~~~gnk~dl~~--------~~~~~~--~~~~~e~SAk~~~n~~ 111 (111)
+. ++.+++++|||+||.. +..+++ ++.|+||||-.+.||+
T Consensus 104 nv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 104 NVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 44 3445999999999944 333333 8999999999999974
No 17
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=8.3e-30 Score=164.51 Aligned_cols=110 Identities=29% Similarity=0.533 Sum_probs=93.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|..+|.||++..|.+.+.+++..+.++||||+|+++|..+++.||+++++++++++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~ 90 (178)
T cd04131 11 QCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDS 90 (178)
T ss_pred CCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHH
Confidence 79999999999999999999999999988788899999999999999999999999999999999766554
Q ss_pred -----------hcCCccEEecccccchhh--------------hhchhc--------cC-ceEEcccccccC-C
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQ--------------MIGFRD--------RL-LWGSKQAREEKN-E 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~--------------~~~~~~--------~~-~~~e~SAk~~~n-~ 110 (111)
..++.+++++|||+||.. .+...+ ++ .|+||||++|+| +
T Consensus 91 ~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v 164 (178)
T cd04131 91 VLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSV 164 (178)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCH
Confidence 235667999999999953 122221 65 799999999996 5
No 18
>KOG0097|consensus
Probab=99.96 E-value=1.1e-30 Score=160.64 Aligned_cols=111 Identities=26% Similarity=0.392 Sum_probs=97.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||+|+++|...+|+..-..|+|.+| .+.+++.+..++|+|||++||++|+...++|||+|.+.+.+++
T Consensus 21 gvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstyn 100 (215)
T KOG0097|consen 21 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 100 (215)
T ss_pred cccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhh
Confidence 7999999999999999999999999999 4788999999999999999999999999999999998666655
Q ss_pred ------------hcCCccEEecccccchhh--------hhchhc--cCceEEcccccccCCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--------MIGFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--------~~~~~~--~~~~~e~SAk~~~n~~ 111 (111)
..++..++++|||.||+. +..+++ ++.|.|+|||+|.|+.
T Consensus 101 hlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nve 162 (215)
T KOG0097|consen 101 HLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVE 162 (215)
T ss_pred hHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHH
Confidence 345556999999999943 334444 8999999999999973
No 19
>KOG0081|consensus
Probab=99.96 E-value=8.6e-32 Score=168.00 Aligned_cols=111 Identities=28% Similarity=0.373 Sum_probs=95.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC---------CeeEEEEEEeCCCcccccccCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD---------GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~---------~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~ 70 (111)
||||||+++||.+++|..+.++|+|.+|+ |.+..+ +..+.|++|||+|||+|+++...|||+|=+++++.
T Consensus 19 GVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiF 98 (219)
T KOG0081|consen 19 GVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIF 98 (219)
T ss_pred CCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEE
Confidence 79999999999999999999999999996 666553 34699999999999999999999999999977766
Q ss_pred h---------------------hcCCccEEecccccchhhhhchh--------c--cCceEEcccccccCCC
Q psy13093 71 L---------------------HAGHPVRFPRGRKIRIMQMIGFR--------D--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 71 ~---------------------~~~~~~~~~~gnk~dl~~~~~~~--------~--~~~~~e~SAk~~~n~~ 111 (111)
+ ...+|.++++|||+||+.++... + +++|+||||-+|.|++
T Consensus 99 DlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~ 170 (219)
T KOG0081|consen 99 DLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVE 170 (219)
T ss_pred eccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHH
Confidence 5 55667799999999996533322 2 8999999999999974
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=7.9e-30 Score=170.49 Aligned_cols=110 Identities=26% Similarity=0.460 Sum_probs=94.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||+.+.|..+|.||++..|.+.+.+++..+.++||||+|+++|+.+++.||++|++++++++
T Consensus 23 ~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~ 102 (232)
T cd04174 23 QCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDS 102 (232)
T ss_pred CCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHH
Confidence 79999999999999999999999999998788899999999999999999999999999999999777655
Q ss_pred -----------hcCCccEEecccccchhh--------------hhchhc--------cC-ceEEccccccc-CC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQ--------------MIGFRD--------RL-LWGSKQAREEK-NE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~--------------~~~~~~--------~~-~~~e~SAk~~~-n~ 110 (111)
..++.+++++|||+||.. .+...+ ++ .|+|||||+|+ |+
T Consensus 103 ~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V 176 (232)
T cd04174 103 ALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSI 176 (232)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCH
Confidence 234556899999999952 222222 67 69999999997 55
No 21
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=1.2e-29 Score=165.18 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=95.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||..+.|..+|.||++.++. +.+.+++..+.+++||++|+++|+.+++.||++||+++++++
T Consensus 16 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~ 95 (189)
T cd04121 16 DVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFD 95 (189)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999999885 678889999999999999999999999999999999877765
Q ss_pred -----------hcCCccEEecccccchhh--hh------chhc--cCceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQ--MI------GFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~--~~------~~~~--~~~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||+||.. .+ .++. ++.|+||||++|.|++
T Consensus 96 ~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 96 GIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 446677999999999954 22 2221 7889999999999973
No 22
>KOG0083|consensus
Probab=99.96 E-value=1.6e-31 Score=162.75 Aligned_cols=110 Identities=28% Similarity=0.440 Sum_probs=93.4
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
++|||+|+.||.++.| ..+.++|+|.+|+ +.+.++++.+++|||||+|||+|++....|||+||+++++++
T Consensus 7 ~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasf 86 (192)
T KOG0083|consen 7 CTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASF 86 (192)
T ss_pred ccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhH
Confidence 6899999999999988 4578999999996 888999999999999999999999999999999999888776
Q ss_pred ------------hcCCcc-EEecccccchh--hhhc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPV-RFPRGRKIRIM--QMIG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~-~~~~gnk~dl~--~~~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
.....+ ..++|||||+. +++. +++ +++|.|||||+|.||
T Consensus 87 dn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 87 DNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNV 148 (192)
T ss_pred HHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccH
Confidence 222223 67999999993 3333 222 899999999999997
No 23
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=5.9e-29 Score=159.99 Aligned_cols=111 Identities=51% Similarity=0.781 Sum_probs=93.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|.++|.||++..|.+.+.+++..+.++|||++|+++|+.+++.+|+++++++++++
T Consensus 11 ~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~ 90 (175)
T cd01874 11 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFEN 90 (175)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999987777888999999999999999999999999999999766654
Q ss_pred -----------hcCCccEEecccccchhhhh--------------------chhc--c-CceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMI--------------------GFRD--R-LLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~--------------------~~~~--~-~~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||+|+.... ..+. + +.|+||||++|.|++
T Consensus 91 ~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~ 164 (175)
T cd01874 91 VKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLK 164 (175)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHH
Confidence 23456799999999985321 1221 3 689999999999973
No 24
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=6.1e-29 Score=165.34 Aligned_cols=110 Identities=30% Similarity=0.566 Sum_probs=93.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.+|..+.|.+.|.||++..|...+.+++..+.|.||||+|++.|..+++.+|+++|+++++++
T Consensus 11 ~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~ 90 (222)
T cd04173 11 ECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDS 90 (222)
T ss_pred CCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999998788899999999999999999999999999999999766665
Q ss_pred -----------hcCCccEEecccccchhhh--------------hchhc--------c-CceEEcccccccC-C
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGFRD--------R-LLWGSKQAREEKN-E 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~~~--------~-~~~~e~SAk~~~n-~ 110 (111)
..++.+++++|||+||... +...+ + +.|+||||+++.| +
T Consensus 91 i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V 164 (222)
T cd04173 91 VLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSV 164 (222)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCH
Confidence 2355679999999999431 11111 5 4899999999886 5
No 25
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=1.4e-28 Score=161.49 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=94.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||+.+.|...|.||+|.++. +.+.+++..++++|||++|+++|+.+++.||+++++++++++
T Consensus 5 ~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~ 84 (200)
T smart00176 5 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYK 84 (200)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHH
Confidence 79999999999999999999999998875 677788999999999999999999999999999999877765
Q ss_pred -----------hcCCccEEecccccchhh-hh-----chhc--cCceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQ-MI-----GFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~-~~-----~~~~--~~~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||+|+.. .+ .++. ++.|+||||++|.|++
T Consensus 85 ~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~ 143 (200)
T smart00176 85 NVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFE 143 (200)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 224567999999999842 11 1111 7899999999999873
No 26
>KOG0091|consensus
Probab=99.96 E-value=9.5e-30 Score=159.33 Aligned_cols=110 Identities=25% Similarity=0.297 Sum_probs=92.4
Q ss_pred cchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEE-CCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 2 VGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 2 vGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~-~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
||||||+.+|..++|.+-..||+|.+|. +-+++ +|..++|++|||+|||+|+++.++|||++-++..+++
T Consensus 19 vgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfe 98 (213)
T KOG0091|consen 19 VGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFE 98 (213)
T ss_pred ccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHH
Confidence 8999999999999999999999999974 55555 6889999999999999999999999999999877776
Q ss_pred -----------hc--CCcc-EEecccccchh--hhhch------hc--cCceEEcccccccCCC
Q psy13093 72 -----------HA--GHPV-RFPRGRKIRIM--QMIGF------RD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~--~~~~-~~~~gnk~dl~--~~~~~------~~--~~~~~e~SAk~~~n~~ 111 (111)
.. |..+ ++++|.|+||. +++.. +. +|.|.|||||.|.||.
T Consensus 99 hv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 99 HVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 22 3333 77999999993 33333 33 8999999999999973
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=4.9e-28 Score=155.27 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=93.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|...+.||++..+.+.+.+++..+.++|||++|+++|+.+++.+|+++++++++++
T Consensus 12 ~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~ 91 (172)
T cd04141 12 GVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQE 91 (172)
T ss_pred CCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHH
Confidence 79999999999999999999999998888778889999999999999999999999999999999766654
Q ss_pred ------------hcCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+... +. ++. +++|+||||++|.|+
T Consensus 92 ~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 152 (172)
T cd04141 92 ASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYI 152 (172)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCH
Confidence 1234579999999999431 11 211 789999999999986
No 28
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=9e-28 Score=154.36 Aligned_cols=111 Identities=62% Similarity=0.922 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||+.+.|..+|.||++..+.+.+.+++..++++||||+|+++|..+++.+++++|+++++++
T Consensus 11 ~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~ 90 (174)
T cd01871 11 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 90 (174)
T ss_pred CCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999988777777889999999999999999999999999999999766665
Q ss_pred -----------hcCCccEEecccccchhhh--------------hch------hc--c-CceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGF------RD--R-LLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~------~~--~-~~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||+|+... +.. +. + +.|+||||++|+|++
T Consensus 91 ~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 164 (174)
T cd01871 91 VRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLK 164 (174)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHH
Confidence 2234679999999999431 111 11 3 589999999999863
No 29
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=1.1e-27 Score=154.97 Aligned_cols=111 Identities=19% Similarity=0.344 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||..+.|.++|.||+|.++. +.+.+++..+.++|||++|+++|+.+++.++++|++++.+++
T Consensus 10 ~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~ 89 (182)
T cd04128 10 QIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLN 89 (182)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999999875 688889999999999999999999999999999999766665
Q ss_pred -----------hcCCccEEecccccchhh------h-------hchhc--cCceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQ------M-------IGFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~------~-------~~~~~--~~~~~e~SAk~~~n~~ 111 (111)
..+..+.+++|||+|+.. . ..++. ++.++++||++|.|++
T Consensus 90 ~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~ 155 (182)
T cd04128 90 SIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQ 155 (182)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 112223368899999931 1 11222 6789999999999863
No 30
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=5.1e-27 Score=152.49 Aligned_cols=110 Identities=37% Similarity=0.519 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|...|.||++..+.+.+.+++..+.++|||++|+++|+.+++.+|+++++++++++
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~ 89 (189)
T cd04134 10 ACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLEN 89 (189)
T ss_pred CCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999987777788889999999999999999999999999998765543
Q ss_pred -----------hcCCccEEecccccchhhhhc--------------------hhc---cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIG--------------------FRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~--------------------~~~---~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+..... .+. .+.|+||||++|.|+
T Consensus 90 ~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v 162 (189)
T cd04134 90 VESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGV 162 (189)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCH
Confidence 334567999999999954221 111 367999999999986
No 31
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=4.4e-27 Score=149.53 Aligned_cols=110 Identities=28% Similarity=0.395 Sum_probs=93.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++.++. +.+.+++..+++++||++|+++|+.+++.+++++++++++++
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 91 (166)
T cd04122 12 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 91 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999999885 677788999999999999999999999999999999877765
Q ss_pred ------------hcCCccEEecccccchhhhhc--------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+..... .+. ++.|+|+||++|.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 152 (166)
T cd04122 92 HLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENV 152 (166)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 124456999999999943221 111 688999999999986
No 32
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.94 E-value=5.1e-27 Score=148.75 Aligned_cols=110 Identities=24% Similarity=0.318 Sum_probs=93.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+.+.+.+++..+.++|||++|+++|..+++.+++++|+++++++
T Consensus 11 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~ 90 (164)
T cd04175 11 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFND 90 (164)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998888788889999999999999999999999999999999766654
Q ss_pred ------------hcCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.+++++|||+|+... ..+++ +++++++||++|.|+
T Consensus 91 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (164)
T cd04175 91 LQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINV 151 (164)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCH
Confidence 2244579999999999431 12222 678999999999986
No 33
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=1e-26 Score=154.35 Aligned_cols=110 Identities=23% Similarity=0.253 Sum_probs=92.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||+.+.|...|.||+|.++. ..+..++..+.++|||++|+++|..+++.||+++++++++++
T Consensus 23 gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~ 102 (219)
T PLN03071 23 GTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 102 (219)
T ss_pred CCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHH
Confidence 79999999999999999999999998875 567778888999999999999999999999999999777665
Q ss_pred -----------hcCCccEEecccccchhhh-h-----chhc--cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM-I-----GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~-~-----~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.+++++|||+|+... + .+.. ++.|+|||||+|.|+
T Consensus 103 ~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 103 NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 2345579999999999421 1 1212 788999999999986
No 34
>KOG0088|consensus
Probab=99.94 E-value=5.4e-28 Score=150.94 Aligned_cols=109 Identities=26% Similarity=0.416 Sum_probs=93.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
.||||||+.||+.++|...+.+|+...| .+.+.+.+....|.||||+|||+|..+-|.|||++++.+++++
T Consensus 23 CVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFq 102 (218)
T KOG0088|consen 23 CVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQ 102 (218)
T ss_pred ccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHH
Confidence 4899999999999999999999999999 4888899999999999999999999999999999999877776
Q ss_pred -----------hcCCc-cEEecccccchhh--------hhchhc--cCceEEcccccccC
Q psy13093 72 -----------HAGHP-VRFPRGRKIRIMQ--------MIGFRD--RLLWGSKQAREEKN 109 (111)
Q Consensus 72 -----------~~~~~-~~~~~gnk~dl~~--------~~~~~~--~~~~~e~SAk~~~n 109 (111)
-..++ ..+++|||+||++ +..+++ +..|+|||||.+..
T Consensus 103 KVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 103 KVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred HHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence 22333 3889999999965 223333 88999999998865
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.94 E-value=9.6e-27 Score=147.62 Aligned_cols=110 Identities=27% Similarity=0.361 Sum_probs=92.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|.+.+.||++.++. +.+.+++..+.++|||++|+++|..+++.+++++|+++.+++
T Consensus 10 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~ 89 (161)
T cd04117 10 GVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQ 89 (161)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 678888889999999999999999999999999999776664
Q ss_pred -----------hc-CCccEEecccccchhhhhc--------hhc--cCceEEcccccccCC
Q psy13093 72 -----------HA-GHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~-~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~~~n~ 110 (111)
.. .+.+++++|||.|+.+... +++ +++|+|||||+|.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v 150 (161)
T cd04117 90 HIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNI 150 (161)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 12 2456899999999943221 111 788999999999986
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.94 E-value=7.1e-27 Score=147.52 Aligned_cols=111 Identities=23% Similarity=0.339 Sum_probs=92.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|...+.||++..+.+.+.+++..+.++|||++|+++|+.+++.|++++++++++++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 90 (163)
T cd04136 11 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFND 90 (163)
T ss_pred CCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999997777888889999999999999999999999999999999766654
Q ss_pred ------------hcCCccEEecccccchhh--hh------chhc--cCceEEcccccccCCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MI------GFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~------~~~~--~~~~~e~SAk~~~n~~ 111 (111)
...+.++++++||+|+.. .+ ...+ +++++++||++|.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04136 91 LQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVD 152 (163)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 123456899999999942 11 1111 5789999999999863
No 37
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.94 E-value=1.3e-26 Score=148.42 Aligned_cols=111 Identities=24% Similarity=0.363 Sum_probs=92.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++||+.+.|..+|.||++.++. +.+.+++..+.++|||++|+++|..+++.+|+++|+++++++
T Consensus 10 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~ 89 (170)
T cd04108 10 SVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLE 89 (170)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999999885 678888999999999999999999999999999999766665
Q ss_pred ------------hcC-CccEEecccccchhhhh----------chhc--cCceEEcccccccCCC
Q psy13093 72 ------------HAG-HPVRFPRGRKIRIMQMI----------GFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ------------~~~-~~~~~~~gnk~dl~~~~----------~~~~--~~~~~e~SAk~~~n~~ 111 (111)
..+ +++++++|||+|+.... ..+. ++.|+++||++|.|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~ 154 (170)
T cd04108 90 HTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVR 154 (170)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 112 24489999999994311 1111 6789999999999863
No 38
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=1.1e-26 Score=151.06 Aligned_cols=110 Identities=30% Similarity=0.334 Sum_probs=92.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|+.+.|...+.||++..+.+.+.+++..+.++|||++|+++|+.+++.||+++|+++++++
T Consensus 9 ~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~ 88 (190)
T cd04144 9 GVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFER 88 (190)
T ss_pred CCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887777888999999999999999999999999999999776654
Q ss_pred ---------h-----cCCccEEecccccchhh--h------hchhc--cCceEEcccccccCC
Q psy13093 72 ---------H-----AGHPVRFPRGRKIRIMQ--M------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~-----~~~~~~~~~gnk~dl~~--~------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.+++++|||+|+.. . ...+. ++.|+|+||++|.|+
T Consensus 89 ~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v 151 (190)
T cd04144 89 VERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNV 151 (190)
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCH
Confidence 1 23457899999999942 1 11222 678999999999986
No 39
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=5.6e-26 Score=145.07 Aligned_cols=110 Identities=52% Similarity=0.797 Sum_probs=93.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.+|..+.|...|.|+++..+...+.+++..+.+++|||+|+++|..+++.+++++|+++++++
T Consensus 8 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~ 87 (174)
T smart00174 8 AVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFEN 87 (174)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887778889999999999999999999999999999998766654
Q ss_pred -----------hcCCccEEecccccchhhhh--------------------chhc--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMI--------------------GFRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~--------------------~~~~--~~-~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+.... .++. ++ .|+|+||++|.|+
T Consensus 88 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 88 VKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred HHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 23456799999999995411 1222 44 8999999999986
No 40
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=4e-26 Score=149.49 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeeeehhh------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------ 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------ 72 (111)
|||||||++||+.+.|...+.||++.++. +.+.++ +..+.+++||++|+++|+.+++.||+++++++++++.
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~ 89 (201)
T cd04107 10 GVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTF 89 (201)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHH
Confidence 79999999999999999999999998874 677777 8899999999999999999999999999998777651
Q ss_pred ------------------cCCccEEecccccchh--hhhchh------c--c-CceEEcccccccCC
Q psy13093 73 ------------------AGHPVRFPRGRKIRIM--QMIGFR------D--R-LLWGSKQAREEKNE 110 (111)
Q Consensus 73 ------------------~~~~~~~~~gnk~dl~--~~~~~~------~--~-~~~~e~SAk~~~n~ 110 (111)
..+.+++++|||+|+. +.+... . + +.|+|+||++|.|+
T Consensus 90 ~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v 156 (201)
T cd04107 90 EAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINI 156 (201)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCH
Confidence 1344689999999995 222221 1 4 68999999999986
No 41
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=5.6e-26 Score=148.61 Aligned_cols=109 Identities=23% Similarity=0.304 Sum_probs=82.7
Q ss_pred CcchHHHHH-HHHhC-----CCCCCCCCceee--eeEEE--------EEECCeeEEEEEEeCCCcccccccCcccccCCc
Q psy13093 1 AVGKTCLLI-SYTTN-----AFPGEYIPTVFD--NYSAN--------VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTW 64 (111)
Q Consensus 1 gvGKssl~~-~~~~~-----~f~~~~~~t~~~--~~~~~--------i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~ 64 (111)
|||||||+. ++.++ .|..+|.||++. .|... +.+++..+.++||||+|+++ .+++.||++++
T Consensus 12 ~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad 89 (195)
T cd01873 12 AVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSD 89 (195)
T ss_pred CcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCC
Confidence 799999996 56544 466789999973 34332 25789999999999999986 46788999999
Q ss_pred eeeeehh--------------------hcCCccEEecccccchhh---------------------hhchh------c--
Q psy13093 65 SLRSFAL--------------------HAGHPVRFPRGRKIRIMQ---------------------MIGFR------D-- 95 (111)
Q Consensus 65 ~~~~~~~--------------------~~~~~~~~~~gnk~dl~~---------------------~~~~~------~-- 95 (111)
+++++++ ..++.+++++|||+||.. .+... .
T Consensus 90 ~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~ 169 (195)
T cd01873 90 VVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKEL 169 (195)
T ss_pred EEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHh
Confidence 9766654 224567899999999852 12221 1
Q ss_pred cCceEEcccccccCCC
Q psy13093 96 RLLWGSKQAREEKNEK 111 (111)
Q Consensus 96 ~~~~~e~SAk~~~n~~ 111 (111)
++.|+|||||+|.|++
T Consensus 170 ~~~~~E~SAkt~~~V~ 185 (195)
T cd01873 170 GIPYYETSVVTQFGVK 185 (195)
T ss_pred CCEEEEcCCCCCCCHH
Confidence 7899999999999974
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=4.9e-26 Score=147.80 Aligned_cols=110 Identities=25% Similarity=0.350 Sum_probs=93.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++||..+.|..++.||++..+.+.+.+++..+.++||||+|+++|..+++.|++++++++++++
T Consensus 15 ~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~ 94 (189)
T PTZ00369 15 GVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEE 94 (189)
T ss_pred CCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999998888899999999999999999999999999999999877754
Q ss_pred ------------hcCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+... +. ..+ +++++++||++|.|+
T Consensus 95 ~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi 155 (189)
T PTZ00369 95 IASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNV 155 (189)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCH
Confidence 1224568999999999432 11 111 678999999999986
No 43
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.93 E-value=6.3e-26 Score=144.14 Aligned_cols=110 Identities=19% Similarity=0.281 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|+.+.|..++.||++..+.+.+..+...+.+++||++|+++|..++..+++.+++++++++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 90 (165)
T cd04140 11 GVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEE 90 (165)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887777778888999999999999999999999999998666554
Q ss_pred --------------hcCCccEEecccccchhh--hhch------hc--cCceEEcccccccCC
Q psy13093 72 --------------HAGHPVRFPRGRKIRIMQ--MIGF------RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------------~~~~~~~~~~gnk~dl~~--~~~~------~~--~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+.. .+.. +. ++.|+|+||++|+|+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v 153 (165)
T cd04140 91 LKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNV 153 (165)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCH
Confidence 114567899999999954 1111 11 678999999999986
No 44
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=9.2e-26 Score=142.76 Aligned_cols=110 Identities=22% Similarity=0.320 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.+|..+.|..++.||++..+...+.+++..+.++|||++|+++|+.+++.|++++|+++.+++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~ 90 (163)
T cd04176 11 GVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQD 90 (163)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999986667788889999999999999999999999999999999776554
Q ss_pred ------------hcCCccEEecccccchhh--hh------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MI------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.+++++|||+|+.. .+ ..+. +++++++||++|.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd04176 91 IKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151 (163)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCH
Confidence 113566899999999943 11 1111 578999999999885
No 45
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.93 E-value=6.8e-26 Score=142.53 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=92.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|+.+.|...+.||++..+.+.+.+++..+.+++||++|+++|+.+++.|++++++++.+++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~ 90 (162)
T cd04138 11 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFED 90 (162)
T ss_pred CCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998888788889989999999999999999999999999998666544
Q ss_pred ------------hcCCccEEecccccchhh-hh------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ-MI------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~-~~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. .+ .... +++++++||++|.|+
T Consensus 91 ~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (162)
T cd04138 91 IHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGV 150 (162)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCH
Confidence 123556899999999943 11 1111 678999999999986
No 46
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.93 E-value=2.3e-25 Score=142.56 Aligned_cols=111 Identities=42% Similarity=0.659 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.+|..+.|..+|.||+...+...+.+++..+.+++||++|+++|..+++.+++++|+++.+++
T Consensus 10 ~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~ 89 (173)
T cd04130 10 AVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQN 89 (173)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHH
Confidence 79999999999999999999999877777778888889999999999999999999999999998766554
Q ss_pred -----------hcCCccEEecccccchhhh--------------hc------hhc--cC-ceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IG------FRD--RL-LWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~------~~~--~~-~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||+|+... +. +++ ++ .|+|+||++|.|++
T Consensus 90 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~ 163 (173)
T cd04130 90 ISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLK 163 (173)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence 1235678999999998421 11 111 44 89999999999973
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=1.2e-25 Score=142.86 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..++|...|.||++.++. +.+..++..+.+++||++|+++|+.++..+++++++++.+++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~ 90 (165)
T cd01865 11 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 90 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHH
Confidence 79999999999999999999999998774 566778888999999999999999999999999999766655
Q ss_pred ------------hcCCccEEecccccchhhhh--------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+.... ..++ +++++++||++|.|+
T Consensus 91 ~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 151 (165)
T cd01865 91 AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINV 151 (165)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 22356699999999994321 1122 578999999999986
No 48
>KOG0395|consensus
Probab=99.93 E-value=3.3e-26 Score=149.68 Aligned_cols=110 Identities=25% Similarity=0.325 Sum_probs=97.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||+|+.||..+.|...|.||+++.|.+.+.+++..+.++|+||+|+++|..|...|+++++++++++.
T Consensus 13 gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~ 92 (196)
T KOG0395|consen 13 GVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEE 92 (196)
T ss_pred CCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999766664
Q ss_pred ------------hcCCccEEecccccchhh--hhchhc--------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MIGFRD--------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~~~~~--------~~~~~e~SAk~~~n~ 110 (111)
.....+++++|||+|+.+ .+...+ +|+|+|+|||++.|+
T Consensus 93 ~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 93 AKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred HHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCH
Confidence 334457999999999964 333333 889999999999886
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.93 E-value=2.5e-25 Score=141.86 Aligned_cols=110 Identities=24% Similarity=0.266 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.|++.+.|...+.||++.++. ..+..++..+.+.+||++|++++..+++.+++++|+++.+++
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 89 (166)
T cd00877 10 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYK 89 (166)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 566667889999999999999999999999999999877776
Q ss_pred -----------hcCCccEEecccccchhhhh------chhc--cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMI------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.+++++|||+|+.+.. .... .+.++|+||++|.|+
T Consensus 90 ~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 90 NVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNF 147 (166)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCCh
Confidence 12256789999999995211 1111 578999999999986
No 50
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=1.4e-25 Score=144.06 Aligned_cols=110 Identities=28% Similarity=0.413 Sum_probs=90.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC----------CeeEEEEEEeCCCcccccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD----------GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~----------~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||+++|..+.|...+.||++.++. +.+.+. +..+.++|||++|+++|+.+++.+++++++++++
T Consensus 14 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 93 (180)
T cd04127 14 GVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLI 93 (180)
T ss_pred CCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEE
Confidence 79999999999999999999999998875 455543 4579999999999999999999999999998777
Q ss_pred hh---------------------hcCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 70 AL---------------------HAGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~---------------------~~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
++ ...+++++++|||+|+... +. +++ +++++|+||++|.|+
T Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v 165 (180)
T cd04127 94 FDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNV 165 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 65 1135678999999999432 11 111 678999999999986
No 51
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.93 E-value=3.7e-25 Score=143.01 Aligned_cols=110 Identities=42% Similarity=0.637 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++..+...+..+ +..+.++||||+|+++|..+++.+++++|+++++++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~ 89 (187)
T cd04132 10 GCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLD 89 (187)
T ss_pred CCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999999987666665 788999999999999999999999999999776655
Q ss_pred ------------hcCCccEEecccccchhhhh------------chhc--cC-ceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI------------GFRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~------------~~~~--~~-~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+.... .++. ++ .++|+||++|.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 155 (187)
T cd04132 90 NVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENV 155 (187)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCH
Confidence 12355799999999995321 1111 55 8899999999986
No 52
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.93 E-value=2.1e-25 Score=147.59 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECC-eeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDG-KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~-~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||+++|..+.|...|.||++.++ .+.+.+++ ..+.++|||++|++.|..+++.||+++|+++++++
T Consensus 10 ~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~ 89 (215)
T cd04109 10 AVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSF 89 (215)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHH
Confidence 7999999999999999999999999887 46777764 57999999999999999999999999999877765
Q ss_pred ------------h----cCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 ------------H----AGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~----~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+++++++|||+|+.+. + .++. ++.++++||++|+|+
T Consensus 90 ~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv 154 (215)
T cd04109 90 ENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRV 154 (215)
T ss_pred HHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 1 122458899999999531 1 2222 678999999999986
No 53
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=8.2e-25 Score=138.67 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=91.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||..+.|.+.+.|+.+..+. ..+.+++..+.+++|||+|+++|..+++.|++++|+++.+++
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 89 (161)
T cd04124 10 AVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYK 89 (161)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHH
Confidence 79999999999999999998999887764 566778889999999999999999999999999999777665
Q ss_pred -----------hcCCccEEecccccchhhhh-----chhc--cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMI-----GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~-----~~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+.... ...+ +++++++||++|.|+
T Consensus 90 ~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 146 (161)
T cd04124 90 NLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNV 146 (161)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 12356799999999984321 1222 678999999999986
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=4.3e-25 Score=139.57 Aligned_cols=110 Identities=21% Similarity=0.359 Sum_probs=92.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||+++++.++|...+.||++.++. +.+.+++..+.+++||++|+++|..+++.+++++++++.+.+.
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~ 89 (168)
T cd04119 10 GVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFE 89 (168)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999999884 6788889999999999999999999999999999998777651
Q ss_pred ------------c------CCccEEecccccchhh--hhc------hhc--cCceEEcccccccCC
Q psy13093 73 ------------A------GHPVRFPRGRKIRIMQ--MIG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 ------------~------~~~~~~~~gnk~dl~~--~~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
. .+.++++++||+|+.. .+. ... ++.++++||++|.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 90 ALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGV 155 (168)
T ss_pred hHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 1 3456999999999952 111 111 678999999999986
No 55
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=4.6e-25 Score=139.30 Aligned_cols=110 Identities=30% Similarity=0.456 Sum_probs=95.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.+|..+.|.+++.||+|.++ .+.+.+++..+.++|||++|+++|..+++.+++++++++++++
T Consensus 9 ~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~ 88 (162)
T PF00071_consen 9 GVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFE 88 (162)
T ss_dssp TSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHH
T ss_pred CCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999998776 5788899999999999999999999999999999999777664
Q ss_pred -----------hcC-CccEEecccccchhh--hhchhc--------cCceEEcccccccCC
Q psy13093 72 -----------HAG-HPVRFPRGRKIRIMQ--MIGFRD--------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~-~~~~~~~gnk~dl~~--~~~~~~--------~~~~~e~SAk~~~n~ 110 (111)
..+ +.+++++|||.|+.+ .+...+ ++.|+|+||+++.|+
T Consensus 89 ~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 89 NLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENV 149 (162)
T ss_dssp THHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTH
T ss_pred ccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCH
Confidence 334 567999999999964 322222 789999999999886
No 56
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=8.3e-25 Score=139.32 Aligned_cols=110 Identities=25% Similarity=0.314 Sum_probs=90.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++.++. +.+.+++..+.++|||++|+++|+.+++.+++++++++.+++
T Consensus 15 ~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 94 (170)
T cd04116 15 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQ 94 (170)
T ss_pred CCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 678889999999999999999999999999999998765543
Q ss_pred -----------h-----cCCccEEecccccchhh-hhc------hhc--c-CceEEcccccccCC
Q psy13093 72 -----------H-----AGHPVRFPRGRKIRIMQ-MIG------FRD--R-LLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~-----~~~~~~~~~gnk~dl~~-~~~------~~~--~-~~~~e~SAk~~~n~ 110 (111)
. ..+.+++++|||+|+.. .+. ..+ + +.++|+||++|.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 95 NLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred hHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 0 12346899999999942 111 111 3 57899999999986
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=6.9e-25 Score=139.59 Aligned_cols=111 Identities=25% Similarity=0.449 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...|.||++.++. +.+.+++..+.+++||++|++++..+++.+++++|+++.+.+
T Consensus 13 ~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~ 92 (167)
T cd01867 13 GVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFE 92 (167)
T ss_pred CCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998875 677788888999999999999999999999999999777765
Q ss_pred ------------hcCCccEEecccccchhhh--------hchhc--cCceEEcccccccCCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~~ 111 (111)
...+.+++++|||+|+... ...+. +++++|+||++|.|++
T Consensus 93 ~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 93 NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVE 154 (167)
T ss_pred hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 1234568999999999531 11111 6889999999998863
No 58
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=1.2e-24 Score=142.45 Aligned_cols=110 Identities=26% Similarity=0.424 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++.++. ..+.+++..+.+.|||++|+++|+.++..+++++++++++++
T Consensus 16 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~ 95 (199)
T cd04110 16 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFV 95 (199)
T ss_pred CCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 677788888999999999999999999999999998777765
Q ss_pred -----------hcCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+..+++++|||+|+... ..... ++.++++||++|.|+
T Consensus 96 ~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi 155 (199)
T cd04110 96 NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINV 155 (199)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCH
Confidence 2334568999999999432 11111 678999999999986
No 59
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=1.1e-24 Score=138.29 Aligned_cols=110 Identities=25% Similarity=0.472 Sum_probs=92.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||++|+.++.|...+.||++.++. +.+.+++..+.+++||++|+++|..+++.+++++++++.+++.
T Consensus 12 ~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 91 (166)
T cd01869 12 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN 91 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998875 6778888899999999999999999999999999998777651
Q ss_pred -------------cCCccEEecccccchhhhh--------chhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~~n~ 110 (111)
.++.++++++||+|+.... ..+. +++++++||++|.|+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 152 (166)
T cd01869 92 NVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNV 152 (166)
T ss_pred hHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCH
Confidence 1345789999999984321 1111 788999999999986
No 60
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.92 E-value=2.4e-25 Score=141.78 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=84.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||..+.|...+.||+|..+. .++...+++++||++|+++|+.+|+.+++++|+++.+++
T Consensus 9 ~vGKTsli~~~~~~~~~~~~~pt~g~~~~---~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~ 85 (164)
T cd04162 9 GAGKTSLLHSLSSERSLESVVPTTGFNSV---AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPL 85 (164)
T ss_pred CCCHHHHHHHHhcCCCcccccccCCcceE---EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999987642 356678999999999999999999999999999877665
Q ss_pred ----------hcCCccEEecccccchhhhhch------------hc--cCceEEccccc
Q psy13093 72 ----------HAGHPVRFPRGRKIRIMQMIGF------------RD--RLLWGSKQARE 106 (111)
Q Consensus 72 ----------~~~~~~~~~~gnk~dl~~~~~~------------~~--~~~~~e~SAk~ 106 (111)
..++.++++++||+|+...... +. ++.+++|||++
T Consensus 86 ~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 86 ARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 1245679999999998542221 11 57789999988
No 61
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.92 E-value=1.7e-24 Score=137.36 Aligned_cols=104 Identities=19% Similarity=0.138 Sum_probs=82.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||+.+.|.+.+.|+ +..|.+.+.+++..+.++|||++|+++ ..|++++|+++++++
T Consensus 10 gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~ 83 (158)
T cd04103 10 QSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQT 83 (158)
T ss_pred CCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999998887776 455667788999999999999999986 357789998777663
Q ss_pred ------------hcCCccEEecccccchhh----hh------chhc---cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ----MI------GFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~----~~------~~~~---~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||.|+.. .+ .+++ ++.|+|||||+|+|+
T Consensus 84 ~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 84 VYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV 147 (158)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCH
Confidence 124557999999999832 11 2221 489999999999986
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=8.6e-25 Score=138.32 Aligned_cols=110 Identities=24% Similarity=0.304 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+.+.+.+++..+.+++||++|+++|..+++.+++++++++++.+
T Consensus 10 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 89 (164)
T smart00173 10 GVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEE 89 (164)
T ss_pred CCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887777888889999999999999999999999999998766554
Q ss_pred ------------hcCCccEEecccccchhhhh--------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.+++++|||+|+.... ..++ ++.++++||++|.|+
T Consensus 90 ~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 150 (164)
T smart00173 90 IKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNV 150 (164)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCH
Confidence 11245689999999994311 1111 678999999999986
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.92 E-value=1.7e-24 Score=138.23 Aligned_cols=110 Identities=26% Similarity=0.411 Sum_probs=90.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCccccc-ccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYD-RLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~-~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||+.+|..+.|...+.||++.++. +.+.+++..+.++|||++|+++|+ .+++.+++++|+++.+++
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 91 (170)
T cd04115 12 NVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASF 91 (170)
T ss_pred CCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHH
Confidence 79999999999999999999999998875 677888999999999999999997 689999999999776654
Q ss_pred --------------hcCCccEEecccccchhhhhc--------hhc--cCceEEccccc---ccCC
Q psy13093 72 --------------HAGHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQARE---EKNE 110 (111)
Q Consensus 72 --------------~~~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~---~~n~ 110 (111)
...+.++++++||+|+..... ++. ++.|+||||++ +.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 92 HSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred HhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCH
Confidence 123467999999999953221 111 68899999999 5553
No 64
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.92 E-value=1.3e-24 Score=146.60 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=91.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.||+.+.|..+|.||++..+.+.+.+++..+.++||||+|+++|..+++.+++++|+++++++
T Consensus 10 gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~ 89 (247)
T cd04143 10 KVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEE 89 (247)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHH
Confidence 79999999999999999999999986666788889999999999999999999999999999998766543
Q ss_pred ---------h-----------cCCccEEecccccchhh--hhchhc---------cCceEEcccccccCC
Q psy13093 72 ---------H-----------AGHPVRFPRGRKIRIMQ--MIGFRD---------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~-----------~~~~~~~~~gnk~dl~~--~~~~~~---------~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.+ .+...+ .+.++++||++|.|+
T Consensus 90 i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 90 VCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred HHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 0 12456899999999953 222111 477999999999886
No 65
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=1.4e-24 Score=137.04 Aligned_cols=110 Identities=21% Similarity=0.355 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC--CeeEEEEEEeCCCcccccccCcccccCCceeeeehh------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD--GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------ 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~--~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------ 71 (111)
|||||||++++..+.|...+.||++.++. +.+.++ +..+.++|||++|+++|..+++.+++++++++.+++
T Consensus 10 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s 89 (162)
T cd04106 10 NVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES 89 (162)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH
Confidence 79999999999999999999999999884 667776 778999999999999999999999999998666654
Q ss_pred -------------hcCCccEEecccccchhh--hhc------hhc--cCceEEcccccccCC
Q psy13093 72 -------------HAGHPVRFPRGRKIRIMQ--MIG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl~~--~~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. .+. .++ +++++++||++|.|+
T Consensus 90 ~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (162)
T cd04106 90 FEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151 (162)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 234567899999999843 111 122 778999999999885
No 66
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=1.8e-24 Score=143.37 Aligned_cols=110 Identities=26% Similarity=0.353 Sum_probs=92.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.+|..+.|...+.||+|.++. +.+.+++..+.++|||++|+++|..+++.+++++++++++++
T Consensus 22 ~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~ 101 (216)
T PLN03110 22 GVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD 101 (216)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 79999999999999999899999999984 788889999999999999999999999999999998766665
Q ss_pred -----------h-cCCccEEecccccchhhhhc--------hh--ccCceEEcccccccCC
Q psy13093 72 -----------H-AGHPVRFPRGRKIRIMQMIG--------FR--DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~-~~~~~~~~~gnk~dl~~~~~--------~~--~~~~~~e~SAk~~~n~ 110 (111)
. ..+.+++++|||+|+.+... ++ .++.|+|+||++|.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 102 NVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1 12456899999999843211 11 1788999999999986
No 67
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.91 E-value=1.3e-24 Score=144.48 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=69.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++||+.++|.. +.||++..+... ....+.+.|||++|+++|+.+++.||+++++++++++
T Consensus 10 ~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~ 85 (220)
T cd04126 10 NVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEE 85 (220)
T ss_pred CCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHH
Confidence 799999999999999975 689999876421 1256889999999999999999999999999877765
Q ss_pred -----------hcCCccEEecccccchh
Q psy13093 72 -----------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~ 88 (111)
...+.+++++|||+|+.
T Consensus 86 l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 86 LEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 12345699999999985
No 68
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=2.4e-24 Score=139.55 Aligned_cols=110 Identities=23% Similarity=0.336 Sum_probs=92.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...|.||++.++. +.+.+++..+.+++||++|+++|..+++.+++++|+++++++
T Consensus 10 ~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~ 89 (188)
T cd04125 10 GVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFE 89 (188)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHH
Confidence 79999999999999998889999998874 677888889999999999999999999999999999877765
Q ss_pred ------------hcCCccEEecccccchhhhh--------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~~n~ 110 (111)
.....+++++|||+|+.+.. .+++ ++.++|+||++|.|+
T Consensus 90 ~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i 150 (188)
T cd04125 90 NLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINV 150 (188)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 11235689999999995321 1222 678999999999886
No 69
>KOG0393|consensus
Probab=99.91 E-value=2.8e-25 Score=143.99 Aligned_cols=111 Identities=59% Similarity=0.868 Sum_probs=94.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeee-ehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRS-FAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~-~~~------- 71 (111)
+||||+|+..|..+.|++.|.||+-++|...+.++ ++.++|.+|||+||++|..+++..|.++|.++. |..
T Consensus 14 a~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~ 93 (198)
T KOG0393|consen 14 AVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFE 93 (198)
T ss_pred CcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHH
Confidence 69999999999999999999999999999899995 999999999999999999999999999997643 221
Q ss_pred ------------hcCCccEEecccccchhhhhch--------------------hc---cCceEEcccccccCCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGF--------------------RD---RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~--------------------~~---~~~~~e~SAk~~~n~~ 111 (111)
..++.+++++|.|.||...... +. -+.|+||||++..|+|
T Consensus 94 nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~ 168 (198)
T KOG0393|consen 94 NVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVK 168 (198)
T ss_pred HHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcH
Confidence 5667789999999999742211 11 3679999999999875
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=1.9e-24 Score=136.51 Aligned_cols=110 Identities=23% Similarity=0.316 Sum_probs=92.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|+.+.|...+.||++..+.+.+.+++..+.+++||++|+++|..+++.+++++++++.+++
T Consensus 12 ~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~ 91 (164)
T cd04145 12 GVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEE 91 (164)
T ss_pred CCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887777889999999999999999999999999999999776655
Q ss_pred ------------hcCCccEEecccccchhhhh--c------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--G------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--~------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... . ... ++.++++||++|.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 152 (164)
T cd04145 92 VDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNV 152 (164)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCH
Confidence 11345789999999984321 1 111 678999999999986
No 71
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.91 E-value=6.7e-24 Score=135.58 Aligned_cols=110 Identities=42% Similarity=0.678 Sum_probs=90.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.+|..+.|...|.||++..+...+.+++..+.+.+||++|+++|+.+++.+++++|+++.+++
T Consensus 11 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~ 90 (175)
T cd01870 11 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN 90 (175)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887777888999999999999999999999999999998764432
Q ss_pred -----------hcCCccEEecccccchhhhhc--------------------hhc---cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIG--------------------FRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~--------------------~~~---~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... .+. ...+++|||++|.|+
T Consensus 91 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (175)
T cd01870 91 IPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGV 163 (175)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCH
Confidence 113567999999999843110 111 247899999999986
No 72
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.91 E-value=1.1e-23 Score=134.48 Aligned_cols=111 Identities=47% Similarity=0.685 Sum_probs=91.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+...+.+++..+.+.+||++|+++|..+++.+++++++++++.+
T Consensus 10 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~ 89 (174)
T cd04135 10 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQN 89 (174)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999988877778888999999999999999999999999999998665433
Q ss_pred -----------hcCCccEEecccccchhhh--------------h------chhc--c-CceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------I------GFRD--R-LLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~------~~~~--~-~~~~e~SAk~~~n~~ 111 (111)
..++.+++++|||+|+... + ..+. + ..|+|+||++|.|++
T Consensus 90 ~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~ 163 (174)
T cd04135 90 VKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLK 163 (174)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHH
Confidence 2245668999999998431 1 1111 3 369999999999863
No 73
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=2.8e-24 Score=141.99 Aligned_cols=110 Identities=27% Similarity=0.368 Sum_probs=90.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEE-CCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~-~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||+++|..+.|...+.||++.++. +.+.+ ++..+.+++||++|+++|..+++.+|+++++++.+++
T Consensus 12 ~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf 91 (211)
T cd04111 12 TVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESF 91 (211)
T ss_pred CCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHH
Confidence 79999999999999999999999998874 66666 4678999999999999999999999999998776665
Q ss_pred ------------h--cCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------H--AGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~--~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
. ....+++++|||+|+... +. ++. ++.|+|+||++|+|+
T Consensus 92 ~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v 154 (211)
T cd04111 92 EHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNV 154 (211)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence 1 123457899999999531 11 111 688999999999986
No 74
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=1e-24 Score=141.06 Aligned_cols=106 Identities=23% Similarity=0.223 Sum_probs=84.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+.++..+.|. .+.||+|.++. . ++...+.+++||++||++++.+|+.||+++|+++.+.+.
T Consensus 27 ~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~ 102 (181)
T PLN00223 27 AAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE 102 (181)
T ss_pred CCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHH
Confidence 79999999999998886 57899998764 2 334568999999999999999999999999998777761
Q ss_pred -------------cCCccEEecccccchhhhhchhc-----cC--------ceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGFRD-----RL--------LWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~~~-----~~--------~~~e~SAk~~~n~ 110 (111)
.++.++++++||+|+.......+ ++ .++++||++|+|+
T Consensus 103 ~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv 166 (181)
T PLN00223 103 ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
T ss_pred HHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCH
Confidence 23567999999999965433222 22 3568999999986
No 75
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=5.6e-24 Score=136.05 Aligned_cols=110 Identities=18% Similarity=0.102 Sum_probs=91.2
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||++||..+.|. .+|.||++..+. +.+.+++..+.+.+||++|++++..+++.||+++|+++.+++
T Consensus 14 ~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~ 93 (169)
T cd01892 14 GSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSF 93 (169)
T ss_pred CCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHH
Confidence 79999999999999998 899999999885 577888888999999999999999999999999999776665
Q ss_pred --------h---cCCccEEecccccchhhhh--------chhc--cC-ceEEcccccccCC
Q psy13093 72 --------H---AGHPVRFPRGRKIRIMQMI--------GFRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 --------~---~~~~~~~~~gnk~dl~~~~--------~~~~--~~-~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.... .+++ ++ .++++||++|.|+
T Consensus 94 ~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 94 SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred HHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 1 1246799999999994321 2222 44 3599999999986
No 76
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.91 E-value=6.8e-24 Score=135.14 Aligned_cols=110 Identities=25% Similarity=0.366 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+.+.+.+++..+.+++||++|+++|..+++.+++++++++++.+
T Consensus 11 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~ 90 (168)
T cd04177 11 GVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNE 90 (168)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887888889999999999999999999999999999998655543
Q ss_pred ------------hcCCccEEecccccchhhhh--------chhc--c-CceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--------GFRD--R-LLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--------~~~~--~-~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... ..++ + ++++++||++|.|+
T Consensus 91 ~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 91 LGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNV 152 (168)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCH
Confidence 12345688999999994321 1112 3 78999999999985
No 77
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=1.7e-23 Score=135.90 Aligned_cols=110 Identities=24% Similarity=0.382 Sum_probs=90.8
Q ss_pred CcchHHHHHHHHhCCCCC-CCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh------
Q psy13093 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------ 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------ 72 (111)
|||||||+++|+.+.|.. .|.||++..|. +.+.+++..+.+++||++|++++..++..+++++++++++++.
T Consensus 10 ~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~ 89 (193)
T cd04118 10 SVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSF 89 (193)
T ss_pred CCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHH
Confidence 799999999999999975 78999999884 6788899999999999999999999999999999987666641
Q ss_pred -------------cCCccEEecccccchhhh------h------chhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQM------I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~------~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
.++.++++++||+|+... + .++. ++.++++||++|.|+
T Consensus 90 ~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 154 (193)
T cd04118 90 ERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNV 154 (193)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 124568999999998421 1 1111 577899999999886
No 78
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.90 E-value=1.6e-24 Score=138.46 Aligned_cols=106 Identities=21% Similarity=0.179 Sum_probs=83.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.|. .+.||+|.++. .+. ...+.+++||++|+++|+.+|+.+|+++++++++++
T Consensus 19 ~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~ 94 (168)
T cd04149 19 AAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDE 94 (168)
T ss_pred CCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHH
Confidence 79999999999988886 46899998764 222 356899999999999999999999999999877776
Q ss_pred ------------hcCCccEEecccccchhhhhchhc-------------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD-------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~-------------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+...+...+ .+.++++||++|.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv 158 (168)
T cd04149 95 ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 158 (168)
T ss_pred HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCCh
Confidence 123457999999999853221111 246799999999986
No 79
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=9.8e-24 Score=137.21 Aligned_cols=110 Identities=29% Similarity=0.440 Sum_probs=90.7
Q ss_pred CcchHHHHHHHHhCCCCC-CCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh------
Q psy13093 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------ 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------ 72 (111)
|||||||++||..+.|.. .+.||++.++. +.+.+++..+.++|||++|+++|..++..+++++|+++.+++.
T Consensus 10 ~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~ 89 (191)
T cd04112 10 GVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASF 89 (191)
T ss_pred CCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHH
Confidence 799999999999999964 78899998885 5678889999999999999999999999999999987776651
Q ss_pred -------------c-CCccEEecccccchhh--hh------chhc--cCceEEcccccccCC
Q psy13093 73 -------------A-GHPVRFPRGRKIRIMQ--MI------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~-~~~~~~~~gnk~dl~~--~~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
. .+.+++++|||+|+.. .+ .++. +++|+|+||++|+|+
T Consensus 90 ~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v 151 (191)
T cd04112 90 DNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNV 151 (191)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 1 2456999999999942 11 1111 678999999999986
No 80
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.90 E-value=9.4e-24 Score=133.77 Aligned_cols=110 Identities=28% Similarity=0.390 Sum_probs=91.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.|...+.||++.++. +.+.+++..+.+++||++|+++|..+++.+++++++++.+.+
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 92 (165)
T cd01868 13 GVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFE 92 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998874 677888888999999999999999999999999998766655
Q ss_pred -----------hc-CCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 72 -----------HA-GHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~-~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
.. .+.+++++|||+|+... ..... ++.++|+||++|.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 93 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNV 153 (165)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 11 23679999999998431 11111 678999999999986
No 81
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=2.6e-24 Score=136.34 Aligned_cols=106 Identities=22% Similarity=0.209 Sum_probs=83.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.|+..+.|. .+.||+|..+. .+.. ..+.+++||++|+++|..+|+.||+++|+++.+++
T Consensus 10 ~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~ 85 (159)
T cd04150 10 AAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGE 85 (159)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHH
Confidence 79999999999999997 57899998764 2333 46889999999999999999999999999877766
Q ss_pred ------------hcCCccEEecccccchhhhhchh---c----------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFR---D----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~---~----------~~~~~e~SAk~~~n~ 110 (111)
.....++++++||+|+....... + .+.++++|||+|.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 86 AREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred HHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence 11236789999999995321111 1 224679999999986
No 82
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=1.2e-23 Score=133.52 Aligned_cols=110 Identities=24% Similarity=0.352 Sum_probs=90.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.|...+.||.+.++. +.+.+++..+.+++||++|+++|..++..+++++|+++.+++
T Consensus 13 ~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~ 92 (165)
T cd01864 13 NVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFE 92 (165)
T ss_pred CCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998774 677888888999999999999999999999999999766665
Q ss_pred ------------hcCCccEEecccccchhhh--------hchhc--c-CceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--------IGFRD--R-LLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--------~~~~~--~-~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.+. ...++ + ..++|+||++|.|+
T Consensus 93 ~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 93 SVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNV 154 (165)
T ss_pred hHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCH
Confidence 1234568999999999532 12222 3 36799999999886
No 83
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=5.1e-24 Score=136.91 Aligned_cols=106 Identities=22% Similarity=0.198 Sum_probs=83.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.|+..+.|. .+.||+|.++.. +.. ..+.+++||++|+++++.+|+.||+++++++.+++
T Consensus 23 ~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~-~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~ 98 (175)
T smart00177 23 AAGKTTILYKLKLGESV-TTIPTIGFNVET-VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDE 98 (175)
T ss_pred CCCHHHHHHHHhcCCCC-CcCCccccceEE-EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHH
Confidence 79999999999988885 578999987642 222 46899999999999999999999999999877766
Q ss_pred ------------hcCCccEEecccccchhhhhchh---c----------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFR---D----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~---~----------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+....+.. + .+.++++||++|.|+
T Consensus 99 ~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (175)
T smart00177 99 AREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGL 162 (175)
T ss_pred HHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCH
Confidence 12345799999999996432211 1 223668999999986
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.90 E-value=3.7e-23 Score=130.57 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.|+++.++. ..+.+++..+.+++||++|+++|..+++.+++++++++.+.+
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 89 (161)
T cd04113 10 GTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFE 89 (161)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998875 667788888999999999999999999999999999766665
Q ss_pred ------------hcCCccEEecccccchhhhhc--h------hc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG--F------RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~--~------~~--~~~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+..... . .. ++.++++||++|.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 150 (161)
T cd04113 90 ALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENV 150 (161)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 123556999999999953211 1 11 688999999999885
No 85
>PLN03108 Rab family protein; Provisional
Probab=99.89 E-value=3.1e-23 Score=136.85 Aligned_cols=110 Identities=25% Similarity=0.381 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++.++. ..+.+++..+.+++||++|+++|..+++.+++++|+++++++
T Consensus 16 gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~ 95 (210)
T PLN03108 16 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95 (210)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHH
Confidence 79999999999999999999999999884 677888999999999999999999999999999998776665
Q ss_pred ------------hcCCccEEecccccchhh--hhchh------c--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MIGFR------D--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~~~~------~--~~~~~e~SAk~~~n~ 110 (111)
.....++++++||+|+.. .+... . ++.|+|+||++|.|+
T Consensus 96 ~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 96 HLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (210)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 113456899999999953 12211 1 688999999999986
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.89 E-value=3.6e-23 Score=130.87 Aligned_cols=110 Identities=24% Similarity=0.296 Sum_probs=89.0
Q ss_pred CcchHHHHHHHHhC--CCCCCCCCceeeeeE-EEEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeeeehhh----
Q psy13093 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH---- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~~~~~~t~~~~~~-~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~---- 72 (111)
|||||||++++..+ .|..+|.||+|.++. +.+.++ +..+.+++||++|++++..+++.+++++|+++.+++.
T Consensus 10 ~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 89 (164)
T cd04101 10 AVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKA 89 (164)
T ss_pred CCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHH
Confidence 79999999999865 789999999998874 566665 5779999999999999999999999999987776551
Q ss_pred ---------------cCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 73 ---------------AGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 ---------------~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.+.++++||+|+... ..... ++.++++||++|.|+
T Consensus 90 s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (164)
T cd04101 90 SFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY 152 (164)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCh
Confidence 124568999999999421 11111 678999999999886
No 87
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.89 E-value=5.2e-23 Score=134.82 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=86.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccccccc--------CcccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRL--------RPLSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~--------~~~~~~~a~~~~~~~~ 71 (111)
|||||||+.||+.++|...|.||++.++ .+.+.+++..+.++||||+|+++|... +..+++++|+++++++
T Consensus 10 ~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D 89 (198)
T cd04142 10 GVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYD 89 (198)
T ss_pred CCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEE
Confidence 7999999999999999999999998765 466778899999999999998765422 3345789998777665
Q ss_pred ------------------h-----cCCccEEecccccchhh--------hhch---hccCceEEcccccccCCC
Q psy13093 72 ------------------H-----AGHPVRFPRGRKIRIMQ--------MIGF---RDRLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ------------------~-----~~~~~~~~~gnk~dl~~--------~~~~---~~~~~~~e~SAk~~~n~~ 111 (111)
. ..+.+++++|||+|+.. .... ..+++|+||||++|.|++
T Consensus 90 ~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~ 163 (198)
T cd04142 90 ICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHIL 163 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHH
Confidence 0 24467999999999932 1111 127899999999999863
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.89 E-value=4.7e-23 Score=135.91 Aligned_cols=109 Identities=25% Similarity=0.378 Sum_probs=88.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||+.+|..+.+ ..+.||.+.++. ..+.+++..+.+.|||++|+++|..++..+++++|+++++++.
T Consensus 24 ~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~ 102 (211)
T PLN03118 24 GVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFT 102 (211)
T ss_pred CCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHH
Confidence 7999999999999888 467899998874 6777888889999999999999999999999999997666540
Q ss_pred ---------------cCCccEEecccccchhhhhc--------hh--ccCceEEcccccccCC
Q psy13093 73 ---------------AGHPVRFPRGRKIRIMQMIG--------FR--DRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 ---------------~~~~~~~~~gnk~dl~~~~~--------~~--~~~~~~e~SAk~~~n~ 110 (111)
..+.+.+++|||+|+..... .. .++.|+|+||++|.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 103 NLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 12335889999999953211 11 1678999999999986
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.89 E-value=3.6e-23 Score=131.27 Aligned_cols=110 Identities=25% Similarity=0.296 Sum_probs=88.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccc-ccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~-~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.+|+.+.|..+|.||.+..+...+.+++..+.+++||++|+++ +...+..+++++|+++.+++
T Consensus 9 ~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 88 (165)
T cd04146 9 GVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFD 88 (165)
T ss_pred CCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHH
Confidence 799999999999999998999999877777778899999999999999996 35667889999998766654
Q ss_pred ----------h----cCCccEEecccccchhhh--------hchhc--cCceEEccccccc-CC
Q psy13093 72 ----------H----AGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEK-NE 110 (111)
Q Consensus 72 ----------~----~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~-n~ 110 (111)
. ..+.+++++|||+|+... ...++ +++|+|+||++|. |+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v 152 (165)
T cd04146 89 EISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGV 152 (165)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhH
Confidence 1 225669999999999532 11221 6889999999995 65
No 90
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=2.2e-23 Score=134.86 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=83.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+.|+..+.|.. +.||++..+. .+ +...+.+++||++|+++++.+|+.||+++|+++.+++.
T Consensus 27 ~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~ 102 (182)
T PTZ00133 27 AAGKTTILYKLKLGEVVT-TIPTIGFNVE-TV--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGD 102 (182)
T ss_pred CCCHHHHHHHHhcCCccc-cCCccccceE-EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHH
Confidence 799999999999999975 7899997764 23 33568999999999999999999999999998777761
Q ss_pred -------------cCCccEEecccccchhhhhchh---c--c--------CceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGFR---D--R--------LLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~~---~--~--------~~~~e~SAk~~~n~ 110 (111)
..+.++++++||.|+.+..... . + +.++++||++|.|+
T Consensus 103 ~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 103 AREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence 1345689999999995422211 1 1 24569999999986
No 91
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.89 E-value=9.9e-23 Score=129.83 Aligned_cols=110 Identities=25% Similarity=0.384 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||+|.++. ..+.+++..+.+.|||++|+++|..++..+++++|+++.+++
T Consensus 14 ~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~ 93 (168)
T cd01866 14 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 93 (168)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 677788888999999999999999999999999999766665
Q ss_pred ------------hcCCccEEecccccchhhh--hch------hc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--IGF------RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~~~------~~--~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+... +.. .. ++.++|+||+.|.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 94 HLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1235669999999999521 111 11 688999999999985
No 92
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.88 E-value=5.8e-23 Score=131.18 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=83.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.|+..+.|.. +.||++..+.. ++...+.+++||++|+++++.+|+.+++++++++.+++
T Consensus 9 ~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~---~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~ 84 (169)
T cd04158 9 GAGKTTILFKLKQDEFMQ-PIPTIGFNVET---VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSE 84 (169)
T ss_pred CCCHHHHHHHHhcCCCCC-cCCcCceeEEE---EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHH
Confidence 799999999999998865 78999877642 23357899999999999999999999999999877765
Q ss_pred ------------hcCCccEEecccccchhhhhchhc--------------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD--------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~--------------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.+.+...+ .+.+++||||+|.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 85 AHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred HHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence 123356999999999954322221 125789999999986
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.88 E-value=4e-22 Score=129.24 Aligned_cols=110 Identities=39% Similarity=0.552 Sum_probs=90.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.|.+.+.||++..+...+.+++..+.+.+||++|+++|..+++.+++++++++.+++
T Consensus 11 g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~ 90 (187)
T cd04129 11 ACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLEN 90 (187)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999988887777788888999999999999999999899999998654443
Q ss_pred -----------hcCCccEEecccccchhhh------------------hchhc--c-CceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM------------------IGFRD--R-LLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~------------------~~~~~--~-~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+... ..++. + +.|+||||++|.|+
T Consensus 91 ~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 91 VRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV 161 (187)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence 3345679999999999431 11111 3 47999999999986
No 94
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.88 E-value=2.4e-22 Score=132.11 Aligned_cols=71 Identities=24% Similarity=0.223 Sum_probs=63.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC-----CeeEEEEEEeCCCcccccccCcccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-----GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~-----~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~ 71 (111)
|||||||+.||+.+.|.+++.||+|.++. +.+.++ ++.+.++|||++|+++|+.+++.||+++++++++++
T Consensus 10 gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyD 86 (202)
T cd04102 10 GVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHD 86 (202)
T ss_pred CCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEE
Confidence 79999999999999999999999998874 556663 578999999999999999999999999999877765
No 95
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=4.4e-22 Score=131.51 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=90.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------ 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------ 73 (111)
|||||||+.|++.+.|...|.||++.++. ..+..++..+.+++||++|+++|..++..+++++++++.+++..
T Consensus 19 g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 98 (215)
T PTZ00132 19 GVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYK 98 (215)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999999885 56667888999999999999999999999999999876665521
Q ss_pred -------------CCccEEecccccchhhhh------chhc--cCceEEcccccccCC
Q psy13093 74 -------------GHPVRFPRGRKIRIMQMI------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 74 -------------~~~~~~~~gnk~dl~~~~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+++++|||+|+.... ...+ ++.|+++||++|.|+
T Consensus 99 ~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 99 NVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 345678899999984311 1111 678999999999875
No 96
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.88 E-value=9.5e-22 Score=124.88 Aligned_cols=110 Identities=52% Similarity=0.734 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.|++...+...+..++..+.+++||++|++++..+++.+++.+|+++.+++
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 89 (171)
T cd00157 10 AVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFEN 89 (171)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999998889999987777777888999999999999999999999999999998766665
Q ss_pred -----------hcCCccEEecccccchhhhhch-------------------hc--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIGF-------------------RD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~~-------------------~~--~~-~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+...... .. ++ .|+++||++|.|.
T Consensus 90 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (171)
T cd00157 90 VKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGV 161 (171)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCH
Confidence 2234679999999999543321 11 44 8999999999885
No 97
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.88 E-value=3.1e-22 Score=126.39 Aligned_cols=110 Identities=25% Similarity=0.389 Sum_probs=91.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||.+..+ .+.+.+++..+.+.+||++|++++..+++.+++++++++.+.+
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 90 (163)
T cd01860 11 SVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFE 90 (163)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHH
Confidence 7999999999999999888899999887 4788889999999999999999999999999999998766655
Q ss_pred ------------hcCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+..++++++||+|+... ..... ++.++++||++|.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (163)
T cd01860 91 KAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENV 151 (163)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 1134558899999998521 11111 678999999999986
No 98
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.88 E-value=4.8e-22 Score=125.37 Aligned_cols=110 Identities=26% Similarity=0.424 Sum_probs=91.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||++++..+.+...+.|+.+.++. ..+.+++..+.+.+||++|++++..+++.+++++|+++.+++.
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 89 (161)
T cd01863 10 GVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFT 89 (161)
T ss_pred CCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHH
Confidence 79999999999999998889999998875 5667788889999999999999999999999999997777551
Q ss_pred --------------cCCccEEecccccchhh-------hhchhc--cCceEEcccccccCC
Q psy13093 73 --------------AGHPVRFPRGRKIRIMQ-------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 --------------~~~~~~~~~gnk~dl~~-------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.+++++|||+|+.. ...... ++.++++||++|+|+
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (161)
T cd01863 90 NLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGV 150 (161)
T ss_pred hHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 13445899999999952 111111 788999999999885
No 99
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.87 E-value=3.9e-22 Score=125.68 Aligned_cols=110 Identities=21% Similarity=0.333 Sum_probs=90.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++...++...+.|+.+.++. +.+.+++..+.+++||++|+++++.+++.+++++++++.+.+
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 89 (161)
T cd01861 10 SVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFD 89 (161)
T ss_pred CCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHH
Confidence 79999999999999998899999998874 677788888999999999999999999999999998766665
Q ss_pred -----------hc-CCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 -----------HA-GHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~-~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
.. .+.++++++||+|+... +. ... ++.++++||++|.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 150 (161)
T cd01861 90 NTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNV 150 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence 11 23569999999999321 11 111 688999999999986
No 100
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.87 E-value=7.1e-22 Score=125.58 Aligned_cols=110 Identities=26% Similarity=0.351 Sum_probs=90.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||++++.++.+...+.+|++.++. +.+.+++..+.+++||++|++.|..++..+++++++++.+++.
T Consensus 10 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~ 89 (172)
T cd01862 10 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFE 89 (172)
T ss_pred CCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 6778889999999999999999999999999999987776541
Q ss_pred -----------------cCCccEEecccccchhh--hh------chhc---cCceEEcccccccCC
Q psy13093 73 -----------------AGHPVRFPRGRKIRIMQ--MI------GFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -----------------~~~~~~~~~gnk~dl~~--~~------~~~~---~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.. .. ...+ .+.++++||++|.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 90 SLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINV 155 (172)
T ss_pred HHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCH
Confidence 11456899999999962 11 1111 378999999999986
No 101
>PTZ00099 rab6; Provisional
Probab=99.87 E-value=5.5e-22 Score=127.92 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=80.2
Q ss_pred hCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------------------h
Q psy13093 13 TNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------------------H 72 (111)
Q Consensus 13 ~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------------------~ 72 (111)
.+.|.++|.||+|.+|. +.+.+++..+.+.||||+|+++|+.+++.||++||+++++++ .
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35788999999999884 678889999999999999999999999999999999777665 1
Q ss_pred c-CCccEEecccccchhh--hhch------hc--cCceEEcccccccCCC
Q psy13093 73 A-GHPVRFPRGRKIRIMQ--MIGF------RD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 73 ~-~~~~~~~~gnk~dl~~--~~~~------~~--~~~~~e~SAk~~~n~~ 111 (111)
. ++.+++++|||+||.. .+.. +. ++.|+|+||++|.|++
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~ 131 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131 (176)
T ss_pred cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 1 3445899999999943 1121 11 6779999999999863
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=8.5e-22 Score=128.78 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=90.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+.+|+.+.|...+.||++..+.+.+.+++..+.+++||++|+.+|..+++.+++++|+++++++.
T Consensus 9 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~ 88 (198)
T cd04147 9 GVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEE 88 (198)
T ss_pred CCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 799999999999999999999998765566778888889999999999999999999999999998777651
Q ss_pred -------------cCCccEEecccccchhhh---hch------h---ccCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQM---IGF------R---DRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~---~~~------~---~~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+... +.. . .++.++++||++|.|+
T Consensus 89 ~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 151 (198)
T cd04147 89 VERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENV 151 (198)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCH
Confidence 134569999999999431 111 1 1467899999999986
No 103
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.87 E-value=4.1e-22 Score=128.85 Aligned_cols=109 Identities=19% Similarity=0.135 Sum_probs=84.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEE-CCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------ 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~-~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------ 72 (111)
|||||||+.++..+.|... .||+|..+. ..+.+ ++..+.+++||++|+++++.+|+.+++++++++.+++.
T Consensus 13 ~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~ 91 (183)
T cd04152 13 SAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERM 91 (183)
T ss_pred CCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHH
Confidence 7999999999999998755 788887764 34444 45679999999999999999999999999997776651
Q ss_pred ---------------cCCccEEecccccchhhhhchh---------c-----cCceEEcccccccCC
Q psy13093 73 ---------------AGHPVRFPRGRKIRIMQMIGFR---------D-----RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 ---------------~~~~~~~~~gnk~dl~~~~~~~---------~-----~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+....... + .+.++++||++|.|+
T Consensus 92 ~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 92 EEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 1235689999999985422111 0 245789999999986
No 104
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=1.1e-21 Score=130.38 Aligned_cols=108 Identities=19% Similarity=0.103 Sum_probs=84.8
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCccccc-CCceeeeehh------
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP-QTWSLRSFAL------ 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~-~a~~~~~~~~------ 71 (111)
|||||||+.+|..+.|. ..|.|+++.++ .+.+.+++..+.+.+||++|++ ..+...+++ ++|+++++++
T Consensus 10 gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S 87 (221)
T cd04148 10 GVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSS 87 (221)
T ss_pred CCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHH
Confidence 79999999999999997 78888887454 5788888999999999999998 334556777 8998776664
Q ss_pred ---------------hcCCccEEecccccchhhhh--------chhc--cCceEEcccccccCC
Q psy13093 72 ---------------HAGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------------~~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... ..+. ++.|+|+||++|.|+
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 88 FERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 11356799999999994321 1112 678999999999986
No 105
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.86 E-value=1.3e-21 Score=123.28 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.|...+.|+++..+.+.+.+++..+.+++||++|++++..+++.+++.+++++.+.+
T Consensus 10 ~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 89 (164)
T cd04139 10 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTA 89 (164)
T ss_pred CCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887777888999999999999999999999999999998666554
Q ss_pred ---------h---cCCccEEecccccchhh--hhchh--------ccCceEEcccccccCC
Q psy13093 72 ---------H---AGHPVRFPRGRKIRIMQ--MIGFR--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~---~~~~~~~~~gnk~dl~~--~~~~~--------~~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.. ..... .+++++++||++|.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 150 (164)
T cd04139 90 TAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNV 150 (164)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCH
Confidence 1 24567999999999954 11111 1678999999999985
No 106
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.86 E-value=2.5e-22 Score=126.55 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=83.0
Q ss_pred CcchHHHHHHHHhCC-CCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc------
Q psy13093 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------ 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~-f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------ 73 (111)
|||||||++++..+. +...+.||+|..+.. +....+.+++||++|+++|+.+|..+++++++++.+.+..
T Consensus 9 ~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~ 85 (162)
T cd04157 9 NSGKTTIINQLKPENAQSQIIVPTVGFNVES---FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLV 85 (162)
T ss_pred CCCHHHHHHHHcccCCCcceecCccccceEE---EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHH
Confidence 799999999999876 467889999866432 2345788999999999999999999999999987776511
Q ss_pred -----------------CCccEEecccccchhhhhc---hhc----------cCceEEcccccccCC
Q psy13093 74 -----------------GHPVRFPRGRKIRIMQMIG---FRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 74 -----------------~~~~~~~~gnk~dl~~~~~---~~~----------~~~~~e~SAk~~~n~ 110 (111)
.+.++++++||+|+..... ..+ .+.++++||++|.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 86 VVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGL 152 (162)
T ss_pred HHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence 2456999999999954211 111 234799999999986
No 107
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.86 E-value=1.3e-21 Score=123.44 Aligned_cols=110 Identities=26% Similarity=0.403 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++....+...+.|+++.++. ..+.+++..+.+++||++|+++|..+++.+++.+|+++.+++
T Consensus 10 ~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~ 89 (164)
T smart00175 10 GVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFE 89 (164)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHH
Confidence 79999999999999999899999999875 677888888999999999999999999999999998777654
Q ss_pred ------------hcCCccEEecccccchhh--hhc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MIG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+.. .+. ..+ ++.++|+||++|.|.
T Consensus 90 ~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 150 (164)
T smart00175 90 NLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNV 150 (164)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 114567999999999943 111 111 788999999999885
No 108
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=3.6e-22 Score=127.41 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=80.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++... |...+.||+|... ..+.. ..+.+++||++|+++++.+|+.||+++++++.+++
T Consensus 9 ~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~ 84 (167)
T cd04161 9 NAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQE 84 (167)
T ss_pred CCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHH
Confidence 79999999999876 8888999999763 33333 46889999999999999999999999999877765
Q ss_pred ------------hcCCccEEecccccchhhhhc------------hh--c--cCceEEcccccc
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG------------FR--D--RLLWGSKQAREE 107 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~------------~~--~--~~~~~e~SAk~~ 107 (111)
...+.++++++||+|+..... .+ . .+.+++|||++|
T Consensus 85 ~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 85 VKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred HHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 113457999999999954331 11 0 245677999998
No 109
>PLN00023 GTP-binding protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=135.20 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=76.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC-------------CeeEEEEEEeCCCcccccccCcccccCCcee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-------------GKPINLGLWDTAGQEDYDRLRPLSYPQTWSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~-------------~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~ 66 (111)
|||||||+.+|..+.|...+.||+|.++. +.+.++ ++.+.++|||++|+++|+.+++.||++++++
T Consensus 31 GVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~Adgi 110 (334)
T PLN00023 31 GVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGV 110 (334)
T ss_pred CCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEE
Confidence 79999999999999999999999999874 666664 2579999999999999999999999999998
Q ss_pred eeehh-------------------hc-------------CCccEEecccccchhh
Q psy13093 67 RSFAL-------------------HA-------------GHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 67 ~~~~~-------------------~~-------------~~~~~~~~gnk~dl~~ 89 (111)
+++++ .. .+.+++++|||+||..
T Consensus 111 ILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 111 IFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 77775 11 1245999999999953
No 110
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=3.6e-21 Score=122.22 Aligned_cols=110 Identities=28% Similarity=0.431 Sum_probs=89.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.++..+.+...+.||++.++. ..+.+++..+.+.+||++|+++|..++..+++.+++++.+++
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 96 (169)
T cd04114 17 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFR 96 (169)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHH
Confidence 79999999999999998888999997764 577788888999999999999999999999999998766654
Q ss_pred ------------hcCCccEEecccccchhhhhc--------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.+.++++||+|+..... +.+ ...++++||++|.|+
T Consensus 97 ~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 97 CLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNV 157 (169)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 112355799999999953211 111 567899999999886
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.85 E-value=1.5e-21 Score=124.85 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=82.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.++....+ ..+.||+|..+ ..+.++ .+.+.+||++|+++++.++..+++++++++.+++
T Consensus 24 ~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 99 (173)
T cd04154 24 NAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDD 99 (173)
T ss_pred CCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHH
Confidence 7999999999997755 56789988544 334454 5889999999999999999999999998766665
Q ss_pred ------------hcCCccEEecccccchhhhhchh-------------ccCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFR-------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~-------------~~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.+..... ..++++++||++|.|+
T Consensus 100 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 100 CKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred HHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 11456799999999995321111 1457999999999985
No 112
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=1.2e-21 Score=123.50 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=82.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||++++..+.+. .+.||++.++. . ++...+.+++||++|+++|+.+|+.+++++++++.+++.
T Consensus 9 ~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~ 84 (158)
T cd04151 9 NAGKTTILYRLQLGEVV-TTIPTIGFNVE-T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGT 84 (158)
T ss_pred CCCHHHHHHHHccCCCc-CcCCccCcCeE-E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 79999999999988886 46789887764 2 233568899999999999999999999999987776651
Q ss_pred -------------cCCccEEecccccchhhhh---chhc----------cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMI---GFRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~---~~~~----------~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.+.. ...+ ++.++++||++|.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 85 AKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred HHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 1245799999999995321 1111 235899999999986
No 113
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.85 E-value=7.8e-21 Score=119.39 Aligned_cols=110 Identities=27% Similarity=0.338 Sum_probs=89.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.+++...+. ..+.+.+..+.+.+||++|++.+..+++.+++++++++.+++
T Consensus 10 ~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 89 (162)
T cd04123 10 RVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQ 89 (162)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999998888888877764 567777888999999999999999999999999998766654
Q ss_pred ------------hcCCccEEecccccchhhhh--ch------hc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--GF------RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--~~------~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... .. .. ++.++++||++|.|+
T Consensus 90 ~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi 150 (162)
T cd04123 90 KVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGI 150 (162)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 11245699999999995311 11 11 678899999999875
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=7.6e-21 Score=120.92 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=83.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++||..+.|...+.+ ....+.....+++..+.+++||++|++++...+..+++.+++++++++
T Consensus 10 ~vGKTsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~ 88 (166)
T cd01893 10 GVGKSSLIMSLVSEEFPENVPR-VLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLER 88 (166)
T ss_pred CCCHHHHHHHHHhCcCCccCCC-cccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHH
Confidence 7999999999999999877544 344454445567788999999999999998888888999998655554
Q ss_pred -----------hcCCccEEecccccchhhhhc----------hhc---c-CceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIG----------FRD---R-LLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~----------~~~---~-~~~~e~SAk~~~n~~ 111 (111)
..++.++++++||+|+..... ... + ..++|+||++|.|++
T Consensus 89 ~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 89 IRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 123457999999999943221 011 2 378999999999863
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=5.2e-21 Score=120.51 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=82.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.+.. +.||++..+. .+.. +..+.+.+||++|++++..+|..+++++++++.+.+
T Consensus 9 ~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~ 85 (160)
T cd04156 9 SAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDE 85 (160)
T ss_pred CCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHH
Confidence 799999999999999865 4788886653 3333 356899999999999999999999999998776665
Q ss_pred ------------hcCCccEEecccccchhhh-----hchh---------ccCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM-----IGFR---------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~-----~~~~---------~~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... +... .++.+++|||++|.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 150 (160)
T cd04156 86 SQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGL 150 (160)
T ss_pred HHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCCh
Confidence 1135679999999998421 1111 1345899999999986
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.84 E-value=7.2e-21 Score=122.21 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=90.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+.++..+.+...+.||.+..+...+.+++..+.+++||++|+++|+.++..++..+++++++++.
T Consensus 11 g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 90 (180)
T cd04137 11 SVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEV 90 (180)
T ss_pred CCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 799999999999999998899999888777778888889999999999999999999999999987665531
Q ss_pred -------------cCCccEEecccccchhh--hh------chhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQ--MI------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~--~~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.+.++++||+|+.. .+ ...+ ++.++++||++|.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 151 (180)
T cd04137 91 VKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENV 151 (180)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 12446899999999952 11 1122 577899999999875
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=2.7e-21 Score=123.99 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=83.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+.++..+.|.. +.||++..+.. +.. ..+.+.+||++|+++++.+|+.+++++++++.+.+.
T Consensus 25 ~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~ 100 (174)
T cd04153 25 NAGKTTILYQFLLGEVVH-TSPTIGSNVEE-IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPL 100 (174)
T ss_pred CCCHHHHHHHHccCCCCC-cCCccccceEE-EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 799999999999999875 68999887642 233 368899999999999999999999999987776651
Q ss_pred -------------cCCccEEecccccchhhhhch---hc----------cCceEEcccccccCCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGF---RD----------RLLWGSKQAREEKNEK 111 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~---~~----------~~~~~e~SAk~~~n~~ 111 (111)
..+.++++++||+|+...... .+ ++.++++||++|.|++
T Consensus 101 ~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 101 TKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred HHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 124568999999998532111 11 3458999999999863
No 118
>KOG4252|consensus
Probab=99.83 E-value=4.2e-23 Score=131.40 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=93.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
+|||||++.||+.+-|...|.-|||.+|. ..+.+++..+.+.+||++||++|..+...|||+|++-+++..
T Consensus 30 ~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFe 109 (246)
T KOG4252|consen 30 SVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFE 109 (246)
T ss_pred ccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHH
Confidence 69999999999999999999999999995 677888888999999999999999999999999998544332
Q ss_pred -----------hcCCccEEecccccchhh--------hhchhc--cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQ--------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~--------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.|.+++-||+||.+ ..+++. .+.+|++|+|+..||
T Consensus 110 a~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 110 ATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred HHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 555667899999999954 222222 788999999999886
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=2.4e-20 Score=116.97 Aligned_cols=111 Identities=25% Similarity=0.360 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.|+.+..+.....+++..+.+++||++|++++..++..+++++++++.+++
T Consensus 9 ~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 88 (160)
T cd00876 9 GVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEE 88 (160)
T ss_pred CCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999986666777778888999999999999999999999999998766654
Q ss_pred ----------hc--CCccEEecccccchhhh--h------chhc--cCceEEcccccccCCC
Q psy13093 72 ----------HA--GHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ----------~~--~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~~ 111 (111)
.. ...++++++||+|+... . .... +++++++||++|.|++
T Consensus 89 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 150 (160)
T cd00876 89 IKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINID 150 (160)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHH
Confidence 11 35679999999999531 1 1111 5789999999998863
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.82 E-value=5.4e-20 Score=114.62 Aligned_cols=110 Identities=26% Similarity=0.427 Sum_probs=91.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||.+.++. ..+..++..+.+.+||++|++.+..++..+++++|+++.+.+
T Consensus 10 ~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~ 89 (159)
T cd00154 10 GVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFE 89 (159)
T ss_pred CCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHH
Confidence 79999999999999999988999998875 577778888999999999999999999999999999777664
Q ss_pred -----------h-cCCccEEecccccchh--hhhchhc--------cCceEEcccccccCC
Q psy13093 72 -----------H-AGHPVRFPRGRKIRIM--QMIGFRD--------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~-~~~~~~~~~gnk~dl~--~~~~~~~--------~~~~~e~SAk~~~n~ 110 (111)
. ....++++++||+|+. +.....+ ++.++++||++|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 150 (159)
T cd00154 90 NLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENV 150 (159)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 1 1356799999999994 2212211 688999999999875
No 121
>KOG0070|consensus
Probab=99.82 E-value=5.7e-21 Score=121.70 Aligned_cols=105 Identities=21% Similarity=0.194 Sum_probs=86.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|+|||||++++..+++.+. .||+|++... +.+ +++++++||.+||++++.+|+.||+++++++++.|
T Consensus 27 ~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~y--kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~e 102 (181)
T KOG0070|consen 27 AAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEY--KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEE 102 (181)
T ss_pred CCCceeeeEeeccCCcccC-CCccccceeE-EEE--cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHH
Confidence 6899999999999999877 9999998753 223 48999999999999999999999999999988887
Q ss_pred ------------hcCCccEEecccccchhhhhchhc-------------cCceEEcccccccC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD-------------RLLWGSKQAREEKN 109 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~-------------~~~~~e~SAk~~~n 109 (111)
.....++++.+||.|++.+.+.++ ......|+|.+|+.
T Consensus 103 ak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 103 AKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred HHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 334567999999999976555444 23346788888865
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=2.4e-20 Score=118.18 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=82.1
Q ss_pred CcchHHHHHHHHhC------CCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--
Q psy13093 1 AVGKTCLLISYTTN------AFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~------~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-- 72 (111)
|||||||+.++... .+...+.||++..+. .+.++ ...+++||++|++.+..++..+++++++++.+++.
T Consensus 9 ~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~ 85 (167)
T cd04160 9 NAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTD 85 (167)
T ss_pred CCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECch
Confidence 79999999999753 234567888888774 23343 57899999999999999999999999987777651
Q ss_pred -------------------cCCccEEecccccchhhhhchhc---------------cCceEEcccccccCC
Q psy13093 73 -------------------AGHPVRFPRGRKIRIMQMIGFRD---------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------------~~~~~~~~~gnk~dl~~~~~~~~---------------~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.......+ +.+++++||++|.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 86 RERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGV 157 (167)
T ss_pred HHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCH
Confidence 23467999999999854322111 347899999999986
No 123
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.81 E-value=2.6e-20 Score=116.23 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=84.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||++++....|...+.||++..+.+ +..+ .+.+.+||++|+++++.++..+++++|+++.+.+.
T Consensus 9 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~ 85 (159)
T cd04159 9 NSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEA 85 (159)
T ss_pred CCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 799999999999999999999999988753 2332 38899999999999999999999999987666541
Q ss_pred -------------cCCccEEecccccchhhhhchh-------------ccCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGFR-------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~~-------------~~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+....... ....++++||++|.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 86 AKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred HHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 1244689999999985322111 0356799999999885
No 124
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.81 E-value=6.8e-20 Score=120.87 Aligned_cols=88 Identities=34% Similarity=0.453 Sum_probs=75.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++..+. ..+...+..+++.+||++||++|+.+++.||+++++++.+++
T Consensus 15 g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~ 94 (219)
T COG1100 15 GVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSD 94 (219)
T ss_pred CccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhh
Confidence 79999999999999999999999999886 444455558999999999999999999999999999766665
Q ss_pred ------------hc-CCccEEecccccchh
Q psy13093 72 ------------HA-GHPVRFPRGRKIRIM 88 (111)
Q Consensus 72 ------------~~-~~~~~~~~gnk~dl~ 88 (111)
.. ...+++++|||+|+.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 95 ELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 11 246799999999994
No 125
>KOG0096|consensus
Probab=99.81 E-value=5.2e-20 Score=117.86 Aligned_cols=110 Identities=23% Similarity=0.170 Sum_probs=89.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|.|||++++|.+.+.|..+|.||+|.+..+.+... ...+++..|||+|||++..++.-||-++++.+.+.+
T Consensus 20 g~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~ 99 (216)
T KOG0096|consen 20 GTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYK 99 (216)
T ss_pred cccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhh
Confidence 68999999999999999999999999976544443 346999999999999999999999998887554443
Q ss_pred -----------hcCCccEEecccccchhhhh-chhc-------cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMI-GFRD-------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~-~~~~-------~~~~~e~SAk~~~n~ 110 (111)
...+.+++++|||+|+..-. ..+. +|.|++.|||.+.|-
T Consensus 100 n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 100 NVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred cchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence 34445799999999996433 1111 899999999999984
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.81 E-value=5.4e-20 Score=119.12 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=81.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+. .+.||++... ..+.++ .+.+.+||++|+++++.+|..+++++++++.+.+
T Consensus 29 ~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~ 104 (190)
T cd00879 29 NAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQE 104 (190)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHH
Confidence 79999999999998874 6788887654 344454 4778999999999999999999999998776654
Q ss_pred ------------hcCCccEEecccccchhhhhchhc------------------------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD------------------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~------------------------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.+.+...+ .+.+++|||++|+|+
T Consensus 105 ~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 179 (190)
T cd00879 105 SKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGY 179 (190)
T ss_pred HHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCCh
Confidence 123467899999999953211111 246899999999986
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=8.2e-20 Score=114.93 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=82.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+++++.+.+ ..+.||++..+.. +.+ ..+.+.+||++|++++..+++.+++++++++.+.+.
T Consensus 9 ~~GKssli~~~~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~ 84 (158)
T cd00878 9 GAGKTTILYKLKLGEV-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEE 84 (158)
T ss_pred CCCHHHHHHHHhcCCC-CCCCCCcCcceEE-EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 7999999999999884 5678888876532 333 368899999999999999999999999987776551
Q ss_pred -------------cCCccEEecccccchhhhhc---hh----------ccCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIG---FR----------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~---~~----------~~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+..... .. ..++++++||++|.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 85 AKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred HHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 23567899999999954221 11 1457899999999885
No 128
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.79 E-value=9.6e-20 Score=117.26 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=84.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|+||||+++++..+.+. .+.||+|.+.. .+.. ..+.+.+||.+|+..++.+|+.||+++++++.+.|
T Consensus 24 ~sGKTtll~~l~~~~~~-~~~pT~g~~~~-~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e 99 (175)
T PF00025_consen 24 GSGKTTLLNRLKNGEIS-ETIPTIGFNIE-EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQE 99 (175)
T ss_dssp TSSHHHHHHHHHSSSEE-EEEEESSEEEE-EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHH
T ss_pred ccchHHHHHHhhhcccc-ccCcccccccc-eeee--CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecc
Confidence 79999999999987665 47899998764 2333 56789999999999999999999999999888886
Q ss_pred ------------hcCCccEEecccccchhhhhchhc--------------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD--------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~--------------~~~~~e~SAk~~~n~ 110 (111)
...+.++++.+||.|+..+....+ .+..+.|||++|+++
T Consensus 100 ~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 100 AKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp HHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred cccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 345667999999999954322222 344688999999875
No 129
>KOG0075|consensus
Probab=99.79 E-value=2.3e-20 Score=115.41 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=90.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
++|||||++....++|.+...||+|++.++ +....+.+.+||.+||.+|++||..|||++++++..++
T Consensus 30 ~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~ 106 (186)
T KOG0075|consen 30 NSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEA 106 (186)
T ss_pred cCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchh
Confidence 489999999999999999999999999876 56678999999999999999999999999998766665
Q ss_pred ------------hcCCccEEecccccchhhhhchhc-------------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD-------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~-------------~~~~~e~SAk~~~n~ 110 (111)
.+...+.++.|||.|+..+.+... ...+|.+|+|+..|.
T Consensus 107 sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 107 SRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred hHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 556667899999999965444333 344688999998873
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.78 E-value=5.3e-19 Score=113.25 Aligned_cols=110 Identities=17% Similarity=0.060 Sum_probs=79.2
Q ss_pred CcchHHHHHHHHhC-------CCCCCCCCce------eeeeE-EEEEE-----CCeeEEEEEEeCCCcccccccCccccc
Q psy13093 1 AVGKTCLLISYTTN-------AFPGEYIPTV------FDNYS-ANVMV-----DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (111)
Q Consensus 1 gvGKssl~~~~~~~-------~f~~~~~~t~------~~~~~-~~i~~-----~~~~~~l~iwD~~G~~~~~~~~~~~~~ 61 (111)
|||||||+.+|+.. .+...+.++. |..+. +.+.+ ++..+.+.+|||+|+++|..++..+++
T Consensus 10 ~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 89 (179)
T cd01890 10 DHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLA 89 (179)
T ss_pred CCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHH
Confidence 69999999999873 2334455543 33443 22222 667899999999999999999999999
Q ss_pred CCceeeeehhhc----------------CCccEEecccccchhhhh------chhc--cC---ceEEcccccccCC
Q psy13093 62 QTWSLRSFALHA----------------GHPVRFPRGRKIRIMQMI------GFRD--RL---LWGSKQAREEKNE 110 (111)
Q Consensus 62 ~a~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~~------~~~~--~~---~~~e~SAk~~~n~ 110 (111)
++|+++.+++.. .+.++++++||+|+.... .+++ ++ .++++||++|.|+
T Consensus 90 ~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (179)
T cd01890 90 ACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGV 165 (179)
T ss_pred hcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCH
Confidence 999977776521 234589999999985321 1112 33 3799999999986
No 131
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=3.7e-19 Score=115.15 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=80.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||++++..+.+. .+.||.+.... .+.+ ..+++.+||++|+++++.+|..||+++++++.+++.
T Consensus 27 ~~GKTsli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~ 102 (184)
T smart00178 27 NAGKTTLLHMLKNDRLA-QHQPTQHPTSE-ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAE 102 (184)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCccccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHH
Confidence 79999999999998875 45777766432 2233 358899999999999999999999999998777651
Q ss_pred -------------cCCccEEecccccchhhhhchhc--------------------cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGFRD--------------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~~~--------------------~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+...++..+ ....++|||++|.|.
T Consensus 103 ~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 103 SKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred HHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 13557999999999853222222 234799999999885
No 132
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.77 E-value=1.1e-18 Score=109.84 Aligned_cols=108 Identities=17% Similarity=0.063 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHh---CCCCCCCCC--ceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc--
Q psy13093 1 AVGKTCLLISYTT---NAFPGEYIP--TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA-- 73 (111)
Q Consensus 1 gvGKssl~~~~~~---~~f~~~~~~--t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~-- 73 (111)
|||||||++++.+ +.+..++.+ |+...+ ..+.+++ ...+++|||+|+++|......+++++|+++.+.+..
T Consensus 10 ~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~ 87 (164)
T cd04171 10 DHGKTTLIKALTGIETDRLPEEKKRGITIDLGF-AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG 87 (164)
T ss_pred CCCHHHHHHHHhCcccccchhhhccCceEEeee-EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC
Confidence 7999999999985 445444444 333333 2334432 468999999999999777777889999876666521
Q ss_pred ---------------CCccEEecccccchhhhh-------chh--------ccCceEEcccccccCC
Q psy13093 74 ---------------GHPVRFPRGRKIRIMQMI-------GFR--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 74 ---------------~~~~~~~~gnk~dl~~~~-------~~~--------~~~~~~e~SAk~~~n~ 110 (111)
..+++++++||+|+.... ... .+.+++++||++|+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 88 IMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred ccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 223688999999995321 111 1467999999999986
No 133
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.76 E-value=9.3e-19 Score=114.05 Aligned_cols=110 Identities=14% Similarity=-0.031 Sum_probs=81.9
Q ss_pred CcchHHHHHHHHh--CCCCCCC------------CCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTT--NAFPGEY------------IPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~--~~f~~~~------------~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
|||||||+.+|+. +.|...+ .++.|..+. +...++...+.+++|||+|+++|..++..+++++|+
T Consensus 12 ~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 91 (194)
T cd01891 12 DHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDG 91 (194)
T ss_pred CCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCE
Confidence 6999999999997 6776554 234555543 445566677899999999999999999999999999
Q ss_pred eeeehhhc----------------CCccEEecccccchhhhh---------chh-------c--cCceEEcccccccCC
Q psy13093 66 LRSFALHA----------------GHPVRFPRGRKIRIMQMI---------GFR-------D--RLLWGSKQAREEKNE 110 (111)
Q Consensus 66 ~~~~~~~~----------------~~~~~~~~gnk~dl~~~~---------~~~-------~--~~~~~e~SAk~~~n~ 110 (111)
++++++.. .+.+.++++||+|+.... ... + +++++++||++|+|.
T Consensus 92 ~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 92 VLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccc
Confidence 77766521 234588999999994211 000 1 567899999999885
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=1.9e-17 Score=102.66 Aligned_cols=110 Identities=33% Similarity=0.316 Sum_probs=85.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|+|||||++++..+.+...+.|+++.++. ..+..++..+.+.+||++|+.++..++..+++.+++++...+
T Consensus 11 ~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~ 90 (161)
T TIGR00231 11 NVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDV 90 (161)
T ss_pred CCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhh
Confidence 79999999999999998888899998875 456677777999999999999999988888887776332222
Q ss_pred -------------hcC-CccEEecccccchhhh--h-------chhccCceEEcccccccCC
Q psy13093 72 -------------HAG-HPVRFPRGRKIRIMQM--I-------GFRDRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -------------~~~-~~~~~~~gnk~dl~~~--~-------~~~~~~~~~e~SAk~~~n~ 110 (111)
... +.++++++||+|+... . .......++++||++|.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 91 EEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNI 152 (161)
T ss_pred hhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCH
Confidence 112 5568999999999541 1 1111567899999999885
No 135
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=1.7e-17 Score=103.98 Aligned_cols=109 Identities=13% Similarity=-0.023 Sum_probs=77.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccccccc------Cccccc--CCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRL------RPLSYP--QTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~------~~~~~~--~a~~~~~~~~ 71 (111)
|||||||++++.+..+...+.|.+.... ...+.+++ ..+.+|||+|++.+..+ +..++. ++++++.+.+
T Consensus 6 ~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d 83 (158)
T cd01879 6 NVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVD 83 (158)
T ss_pred CCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEee
Confidence 7999999999998875554455544444 34556664 57899999999988753 566665 8888766654
Q ss_pred --------------hcCCccEEecccccchhhhh-------chhc--cCceEEcccccccCCC
Q psy13093 72 --------------HAGHPVRFPRGRKIRIMQMI-------GFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 --------------~~~~~~~~~~gnk~dl~~~~-------~~~~--~~~~~e~SAk~~~n~~ 111 (111)
...+.++++++||+|+.... .... +++++++||++|.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~ 146 (158)
T cd01879 84 ATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGID 146 (158)
T ss_pred CCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHH
Confidence 12345689999999995321 1111 6789999999998863
No 136
>KOG0073|consensus
Probab=99.73 E-value=1.3e-17 Score=104.70 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=83.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|+|||+|+++|.... .+...||.|+.... + --+.+.++|||.+||...++.|+.||..+|+++.+.+
T Consensus 26 NsGKTti~~kl~~~~-~~~i~pt~gf~Ikt-l--~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e 101 (185)
T KOG0073|consen 26 NSGKTTIVKKLLGED-TDTISPTLGFQIKT-L--EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQE 101 (185)
T ss_pred CCCchhHHHHhcCCC-ccccCCccceeeEE-E--EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHH
Confidence 689999999998766 56778999988653 2 2367899999999999999999999999999887776
Q ss_pred ------------hcCCccEEecccccchhh-----hhc----hhc-----cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ-----MIG----FRD-----RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~-----~~~----~~~-----~~~~~e~SAk~~~n~ 110 (111)
..-..+.++++||.|+.- .++ +.+ .+.-+.|||-+|++.
T Consensus 102 ~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 102 CKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred HHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 233356889999999951 111 111 566699999999864
No 137
>KOG4423|consensus
Probab=99.71 E-value=5.9e-20 Score=117.47 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=86.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCe-eEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGK-PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~-~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
||||||+++||+...|...|..|||.+|. +.+..+++ .+++++||.+||++|..|..-||+.|++...+.+
T Consensus 35 ~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tf 114 (229)
T KOG4423|consen 35 GVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTF 114 (229)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccc
Confidence 79999999999999999999999999995 66666654 5899999999999999999999999998433332
Q ss_pred --------------h--cCCc-cEEecccccchhhhhchh------c------cCceEEcccccccCC
Q psy13093 72 --------------H--AGHP-VRFPRGRKIRIMQMIGFR------D------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------------~--~~~~-~~~~~gnk~dl~~~~~~~------~------~~~~~e~SAk~~~n~ 110 (111)
. .+.| +.++.+||||........ + -..|+|||||++.|.
T Consensus 115 e~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 115 EPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred cHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 1 1222 388999999995422222 1 246899999999874
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=2.6e-17 Score=104.83 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=79.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------- 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------- 73 (111)
|||||||++++....+. .+.||.|..+. .+..+ ...+.+||++|+.++..++..+++++++++.+.+..
T Consensus 24 g~GKStLl~~l~~~~~~-~~~~t~g~~~~-~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~ 99 (173)
T cd04155 24 NAGKTTILKQLASEDIS-HITPTQGFNIK-TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEE 99 (173)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHH
Confidence 79999999999987764 46788886543 33444 477899999999999999999999999876665421
Q ss_pred --------------CCccEEecccccchhhhhc---hhc--cC--------ceEEcccccccCC
Q psy13093 74 --------------GHPVRFPRGRKIRIMQMIG---FRD--RL--------LWGSKQAREEKNE 110 (111)
Q Consensus 74 --------------~~~~~~~~gnk~dl~~~~~---~~~--~~--------~~~e~SAk~~~n~ 110 (111)
.+.++++++||+|+..... ..+ ++ .++++||++|.|+
T Consensus 100 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 100 AGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred HHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence 2356889999999954221 111 11 3679999999986
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.69 E-value=4.8e-17 Score=102.94 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=79.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||++++..+.+...+.++....+. ..+..+ +....+.+|||+|++.|..++..+++.+|+++.+.+
T Consensus 10 ~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~ 89 (168)
T cd01887 10 DHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMP 89 (168)
T ss_pred CCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccH
Confidence 79999999999999887765554444432 333333 246789999999999999999999999998766554
Q ss_pred ---------hcCCccEEecccccchhhh--------hc---------hhccCceEEcccccccCC
Q psy13093 72 ---------HAGHPVRFPRGRKIRIMQM--------IG---------FRDRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~~~~~~~~~~gnk~dl~~~--------~~---------~~~~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... .. ....+.++++||++|+|+
T Consensus 90 ~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 90 QTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred HHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 1234458999999998521 00 011357899999999985
No 140
>KOG0071|consensus
Probab=99.68 E-value=4.3e-17 Score=100.31 Aligned_cols=91 Identities=23% Similarity=0.241 Sum_probs=74.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
++|||||++.+..++-. ...||+|++... +.-+++++.+||.+||++.+.+|++||.+++++|++.+
T Consensus 27 ~aGKTtiLyKLkl~~~~-~~ipTvGFnvet---VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~ee 102 (180)
T KOG0071|consen 27 AAGKTTILYKLKLGQSV-TTIPTVGFNVET---VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEE 102 (180)
T ss_pred cCCceehhhHHhcCCCc-ccccccceeEEE---EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHH
Confidence 68999999999987754 558999998752 34478999999999999999999999999999999887
Q ss_pred ------------hcCCccEEecccccchhhhhchhc
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD 95 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~ 95 (111)
...+.++++.+||.|+..+.+..+
T Consensus 103 Ar~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqe 138 (180)
T KOG0071|consen 103 ARNELHRIINDREMRDAIILILANKQDLPDAMKPQE 138 (180)
T ss_pred HHHHHHHHhCCHhhhcceEEEEecCcccccccCHHH
Confidence 333445889999999965444433
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=2.6e-17 Score=101.97 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=67.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCc-----ccccccCcccccCCceeeeehh----
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ-----EDYDRLRPLSYPQTWSLRSFAL---- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~-----~~~~~~~~~~~~~a~~~~~~~~---- 71 (111)
|||||||++||..+.+ .+.||++.++.. .+||++|+ +.|+.+.+ .++++|+++.+++
T Consensus 10 ~vGKSsL~~~l~~~~~--~~~~t~~~~~~~-----------~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~ 75 (142)
T TIGR02528 10 GCGKTTLTQALQGEEI--LYKKTQAVEYND-----------GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDP 75 (142)
T ss_pred CCCHHHHHHHHcCCcc--ccccceeEEEcC-----------eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCC
Confidence 7999999999998876 456777665421 58999998 34555554 4899998766665
Q ss_pred ---------hcCCccEEecccccchhh-hh------chhc--cC-ceEEcccccccCC
Q psy13093 72 ---------HAGHPVRFPRGRKIRIMQ-MI------GFRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~~~~~~~~~~gnk~dl~~-~~------~~~~--~~-~~~e~SAk~~~n~ 110 (111)
.....+.++++||+|+.. .+ ...+ +. +++++||++|.|+
T Consensus 76 ~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 76 ESRFPPGFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred CcCCChhHHHhccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 111236788999999943 11 1111 34 6899999999885
No 142
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.63 E-value=2e-15 Score=95.65 Aligned_cols=107 Identities=15% Similarity=-0.048 Sum_probs=63.9
Q ss_pred CcchHHHHHHHHhCCCCCC-CC-CceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcc---------cccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGE-YI-PTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL---------SYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~-~~-~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~---------~~~~a~~~~~~ 69 (111)
|||||||++++..+.+... +. +|...... . .....+.++||||+|+.......+. ....+++++.+
T Consensus 10 ~~GKssli~~l~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v 86 (168)
T cd01897 10 NVGKSSLVNKLTRAKPEVAPYPFTTKSLFVG-H--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFL 86 (168)
T ss_pred CCCHHHHHHHHhcCCCccCCCCCcccceeEE-E--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEE
Confidence 7999999999999877432 21 12222211 1 2224588999999998532111010 01124554433
Q ss_pred hh---------------------hcCCccEEecccccchhhhhchh------c--cCceEEcccccccCC
Q psy13093 70 AL---------------------HAGHPVRFPRGRKIRIMQMIGFR------D--RLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~---------------------~~~~~~~~~~gnk~dl~~~~~~~------~--~~~~~e~SAk~~~n~ 110 (111)
.+ ...+.++++++||+|+....... . ...++++||++|.|+
T Consensus 87 ~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 87 FDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred EeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCH
Confidence 32 11245689999999994422221 1 677899999999986
No 143
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.62 E-value=9.4e-16 Score=114.30 Aligned_cols=110 Identities=17% Similarity=0.069 Sum_probs=79.6
Q ss_pred CcchHHHHHHHHhC-------CCCCCCCCce------eeeeE-EEEEE-----CCeeEEEEEEeCCCcccccccCccccc
Q psy13093 1 AVGKTCLLISYTTN-------AFPGEYIPTV------FDNYS-ANVMV-----DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (111)
Q Consensus 1 gvGKssl~~~~~~~-------~f~~~~~~t~------~~~~~-~~i~~-----~~~~~~l~iwD~~G~~~~~~~~~~~~~ 61 (111)
++|||||+.|++.. .+...+..+. |..+. +.+.+ ++..+.+++|||+|+.+|...+..+++
T Consensus 13 d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~ 92 (595)
T TIGR01393 13 DHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLA 92 (595)
T ss_pred CCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHH
Confidence 68999999999874 2444454443 55553 33333 567799999999999999999999999
Q ss_pred CCceeeeehhhc----------------CCccEEecccccchhhh------hchhc--cC---ceEEcccccccCC
Q psy13093 62 QTWSLRSFALHA----------------GHPVRFPRGRKIRIMQM------IGFRD--RL---LWGSKQAREEKNE 110 (111)
Q Consensus 62 ~a~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~------~~~~~--~~---~~~e~SAk~~~n~ 110 (111)
.+|+++++++.. .+.++++++||+|+... ....+ ++ .++++||++|.|+
T Consensus 93 ~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI 168 (595)
T TIGR01393 93 ACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGI 168 (595)
T ss_pred hCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCH
Confidence 999977776621 23458899999999532 11112 33 3789999999986
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.61 E-value=9.6e-16 Score=100.10 Aligned_cols=104 Identities=14% Similarity=-0.010 Sum_probs=69.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCC-----------cccccccCccccc-CCc---e
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAG-----------QEDYDRLRPLSYP-QTW---S 65 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G-----------~~~~~~~~~~~~~-~a~---~ 65 (111)
|||||||++++....+...+.|++.... ..+.++ .+.+|||+| +++++.+++.|++ +++ .
T Consensus 19 ~~GKSsLin~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (201)
T PRK04213 19 NVGKSTLVRELTGKKVRVGKRPGVTRKP-NHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILA 93 (201)
T ss_pred CCCHHHHHHHHhCCCCccCCCCceeeCc-eEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheE
Confidence 7999999999999888766666554332 222222 589999999 7888888888876 443 3
Q ss_pred eeeehhh---------------------------cCCccEEecccccchhhhh-----chhc--cC---------ceEEc
Q psy13093 66 LRSFALH---------------------------AGHPVRFPRGRKIRIMQMI-----GFRD--RL---------LWGSK 102 (111)
Q Consensus 66 ~~~~~~~---------------------------~~~~~~~~~gnk~dl~~~~-----~~~~--~~---------~~~e~ 102 (111)
++.+.+. ..+.++++++||+|+.... ...+ ++ .++++
T Consensus 94 vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (201)
T PRK04213 94 AVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPI 173 (201)
T ss_pred EEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEE
Confidence 3333221 1234689999999994321 1122 33 47999
Q ss_pred ccccccCC
Q psy13093 103 QAREEKNE 110 (111)
Q Consensus 103 SAk~~~n~ 110 (111)
||++| |+
T Consensus 174 SA~~g-gi 180 (201)
T PRK04213 174 SAKKG-GI 180 (201)
T ss_pred ecccC-CH
Confidence 99999 85
No 145
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.61 E-value=2.6e-15 Score=93.77 Aligned_cols=108 Identities=14% Similarity=-0.025 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHhCC--CCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccc--------cCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR--------LRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~--f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~--------~~~~~~~~a~~~~~~~ 70 (111)
|||||||++++.... +...+.++...........+ ...+.+|||+|...+.. .+..+++++|+++.+.
T Consensus 7 ~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~ 84 (157)
T cd01894 7 NVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVV 84 (157)
T ss_pred CCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 799999999999765 34444444333333344443 36799999999988654 2345678899876665
Q ss_pred hh----------------cCCccEEecccccchhhhhchhc-----cC-ceEEcccccccCC
Q psy13093 71 LH----------------AGHPVRFPRGRKIRIMQMIGFRD-----RL-LWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~----------------~~~~~~~~~gnk~dl~~~~~~~~-----~~-~~~e~SAk~~~n~ 110 (111)
+. ....++++++||+|+........ ++ .++++||++|.|+
T Consensus 85 d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 85 DGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGI 146 (157)
T ss_pred eccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCH
Confidence 41 11356899999999954222111 34 6799999999885
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.61 E-value=4.9e-15 Score=90.72 Aligned_cols=109 Identities=30% Similarity=0.393 Sum_probs=84.0
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|+|||||++++..... .....+|. .++ ............+.+||++|+..+...+..+++.+++++.+.+
T Consensus 6 ~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 84 (157)
T cd00882 6 GVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF 84 (157)
T ss_pred CCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH
Confidence 7999999999998877 66667777 554 3555666778999999999999998888889999998766643
Q ss_pred --------------hcCCccEEecccccchhhhhc---------hh--ccCceEEcccccccCC
Q psy13093 72 --------------HAGHPVRFPRGRKIRIMQMIG---------FR--DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------------~~~~~~~~~~gnk~dl~~~~~---------~~--~~~~~~e~SAk~~~n~ 110 (111)
.....++++++||+|+..... .. ....++++||+.+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 85 ENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred HHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 334456899999999943211 11 1678999999998875
No 147
>KOG1673|consensus
Probab=99.61 E-value=7.5e-16 Score=96.36 Aligned_cols=109 Identities=20% Similarity=0.354 Sum_probs=91.3
Q ss_pred cchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 2 vGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
+|||||+..|+++.+.+++..+.|.+| .+.+.+.+..+.+.|||.+||+++..+.|.-++++.+++++.+
T Consensus 31 iGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnS 110 (205)
T KOG1673|consen 31 IGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNS 110 (205)
T ss_pred cCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHH
Confidence 799999999999999999999999999 4899999999999999999999999999999999998777665
Q ss_pred ---------hcCCc-cEEecccccchh-------------hhhchhc--cCceEEcccccccCC
Q psy13093 72 ---------HAGHP-VRFPRGRKIRIM-------------QMIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~~~~~-~~~~~gnk~dl~-------------~~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+. .-+++|.|.|+- +++.++. ++.-+-|||..+-|+
T Consensus 111 i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 111 IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 33333 367999999981 1333333 777888999888775
No 148
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.60 E-value=2.8e-15 Score=96.54 Aligned_cols=108 Identities=12% Similarity=-0.018 Sum_probs=70.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCc----------ccccccCcccccCC---cee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQ----------EDYDRLRPLSYPQT---WSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~----------~~~~~~~~~~~~~a---~~~ 66 (111)
|||||||++++....+...+.++.+.... .....++ .+.+||++|. +.+..+...|++.+ +++
T Consensus 28 ~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 104 (179)
T TIGR03598 28 NVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGV 104 (179)
T ss_pred CCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEE
Confidence 79999999999988766666666665432 2222332 6899999994 33444445566643 455
Q ss_pred eeehh----------------hcCCccEEecccccchhhhhc-------hhc-------cCceEEcccccccCCC
Q psy13093 67 RSFAL----------------HAGHPVRFPRGRKIRIMQMIG-------FRD-------RLLWGSKQAREEKNEK 111 (111)
Q Consensus 67 ~~~~~----------------~~~~~~~~~~gnk~dl~~~~~-------~~~-------~~~~~e~SAk~~~n~~ 111 (111)
+.+.+ .....+++++.||+|+..... ..+ +..++++||++|+|++
T Consensus 105 i~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 105 VLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 45444 223446889999999953211 111 3478999999999975
No 149
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.59 E-value=6.7e-15 Score=109.53 Aligned_cols=109 Identities=16% Similarity=0.055 Sum_probs=79.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
++|||||+.++....+...+.+.+..... ..+.+++. ..+.+|||+|+++|..++..+++.+|+++++++
T Consensus 97 d~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~q 175 (587)
T TIGR00487 97 DHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQ 175 (587)
T ss_pred CCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHh
Confidence 68999999999998887765554444432 34444432 278999999999999999999999998766664
Q ss_pred --------hcCCccEEecccccchhh-----hhchh-c----------cCceEEcccccccCC
Q psy13093 72 --------HAGHPVRFPRGRKIRIMQ-----MIGFR-D----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------~~~~~~~~~~gnk~dl~~-----~~~~~-~----------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. ..... + +..++++||++|+|+
T Consensus 176 T~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 176 TIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred HHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 123456999999999842 11110 0 246899999999986
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=2.3e-15 Score=109.78 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeee-eEEEEEECCeeEEEEEEeCCCc----------ccccccC-cccccCCceee
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQ----------EDYDRLR-PLSYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~-~~~~i~~~~~~~~l~iwD~~G~----------~~~~~~~-~~~~~~a~~~~ 67 (111)
|||||||+++++...+ .....|.+..+ ....+.+++.. +.+|||+|. +.|..++ ..++++||+++
T Consensus 221 nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vi 298 (472)
T PRK03003 221 NVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAV 298 (472)
T ss_pred CCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEE
Confidence 7999999999998865 22233434444 34566677665 469999995 3344443 24678999877
Q ss_pred eehhh----------------cCCccEEecccccchhhh---h----ch----h--ccCceEEcccccccCC
Q psy13093 68 SFALH----------------AGHPVRFPRGRKIRIMQM---I----GF----R--DRLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~~----------------~~~~~~~~~gnk~dl~~~---~----~~----~--~~~~~~e~SAk~~~n~ 110 (111)
++++. ..+.++++++||+|+... . .. . ..++++++||++|.|+
T Consensus 299 lV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv 370 (472)
T PRK03003 299 VLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAV 370 (472)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCH
Confidence 77651 134568999999999421 0 11 1 1367899999999986
No 151
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.58 E-value=6.6e-15 Score=109.75 Aligned_cols=108 Identities=12% Similarity=-0.002 Sum_probs=75.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCccccccc------Cccccc--CCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRL------RPLSYP--QTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~------~~~~~~--~a~~~~~~~~ 71 (111)
|||||||++++.+..+.....|.+..+.. ..+..++ .++++||++|+.++... .+.|+. ++|+++.+.+
T Consensus 4 NvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvD 81 (591)
T TIGR00437 4 NVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVD 81 (591)
T ss_pred CCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEec
Confidence 79999999999988775444555555543 4555554 45799999999988664 344443 6787666655
Q ss_pred h--------------cCCccEEecccccchhhhhc-------hhc--cCceEEcccccccCC
Q psy13093 72 H--------------AGHPVRFPRGRKIRIMQMIG-------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~--------------~~~~~~~~~gnk~dl~~~~~-------~~~--~~~~~e~SAk~~~n~ 110 (111)
. -.+.+.++++||+|+.+... .++ +++++++||++|.|+
T Consensus 82 at~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 82 ASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred CCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCH
Confidence 1 13456899999999954322 111 788999999999985
No 152
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.58 E-value=4.7e-15 Score=97.08 Aligned_cols=107 Identities=15% Similarity=-0.009 Sum_probs=69.1
Q ss_pred CcchHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCeeEEEEEEeCCCccc---------ccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPINLGLWDTAGQED---------YDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~--~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~---------~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||++++....+... +.+|+.... ..+.+++. ..+.+|||+|..+ +...+ ..++++|+++.+
T Consensus 51 g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v 127 (204)
T cd01878 51 NAGKSTLFNALTGADVYAEDQLFATLDPTT-RRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHV 127 (204)
T ss_pred CCCHHHHHHHHhcchhccCCccceecccee-EEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEE
Confidence 7999999999998865322 334443322 23334432 3789999999832 22222 235678876665
Q ss_pred hh--------------------hcCCccEEecccccchhhhhch-----hccCceEEcccccccCC
Q psy13093 70 AL--------------------HAGHPVRFPRGRKIRIMQMIGF-----RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~--------------------~~~~~~~~~~gnk~dl~~~~~~-----~~~~~~~e~SAk~~~n~ 110 (111)
.+ ...+.++++++||+|+...... ....+++++||++|.|+
T Consensus 128 ~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 128 VDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGL 193 (204)
T ss_pred EECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCH
Confidence 53 1124568999999999543321 22678999999999986
No 153
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.57 E-value=4.6e-15 Score=97.58 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=66.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCeeEEEEEEeCCCcccccccCcccccCC-ceeeeehhhc-----
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT-WSLRSFALHA----- 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~-~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a-~~~~~~~~~~----- 73 (111)
|||||+|+.++..+.+...+.++ ...+.. .....+....+.+||++|+++++.++..+++++ ++++++++..
T Consensus 10 ~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~ 88 (203)
T cd04105 10 DSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKN 88 (203)
T ss_pred CCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhH
Confidence 79999999999999988776554 333321 121224568899999999999999999999999 9877776511
Q ss_pred -------------------CCccEEecccccchh
Q psy13093 74 -------------------GHPVRFPRGRKIRIM 88 (111)
Q Consensus 74 -------------------~~~~~~~~gnk~dl~ 88 (111)
+..++++++||+|+.
T Consensus 89 ~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 89 LKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence 356689999999984
No 154
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.57 E-value=1.1e-14 Score=104.90 Aligned_cols=108 Identities=16% Similarity=0.025 Sum_probs=73.2
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccC-----------cccccCCceee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLR-----------PLSYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~-----------~~~~~~a~~~~ 67 (111)
|||||||+++++.... ...+..|........+..++. .+.+|||+|..++..+. ..+++.+|+++
T Consensus 182 ~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i 259 (429)
T TIGR03594 182 NVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVL 259 (429)
T ss_pred CCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEE
Confidence 6999999999997653 334444444444444445544 68899999987665443 24678999877
Q ss_pred eehh----------------hcCCccEEecccccchh-hhh---chh----------ccCceEEcccccccCC
Q psy13093 68 SFAL----------------HAGHPVRFPRGRKIRIM-QMI---GFR----------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~----------------~~~~~~~~~~gnk~dl~-~~~---~~~----------~~~~~~e~SAk~~~n~ 110 (111)
.+.+ ...+.++++++||+|+. ... ... ..++++++||++|+|+
T Consensus 260 lV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v 332 (429)
T TIGR03594 260 LVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGV 332 (429)
T ss_pred EEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCH
Confidence 7765 22245689999999995 211 111 1467899999999986
No 155
>KOG0072|consensus
Probab=99.56 E-value=6.8e-16 Score=95.38 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=83.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|+|||++++|..-++...+ .||+|++... +.-++.++++||.+||...+..|+.||.+++++|.+++
T Consensus 28 GaGkttIlyrlqvgevvtt-kPtigfnve~---v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~ 103 (182)
T KOG0072|consen 28 GAGKTTILYRLQVGEVVTT-KPTIGFNVET---VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISI 103 (182)
T ss_pred CCCeeEEEEEcccCccccc-CCCCCcCccc---cccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhh
Confidence 6899999999887776554 7999987642 44589999999999999999999999999999998887
Q ss_pred ------------hcCCccEEecccccchhhhhchhc-------------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD-------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~-------------~~~~~e~SAk~~~n~ 110 (111)
.+.....++.+||.|..-.....+ -...+++||-+|+..
T Consensus 104 a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 104 AGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL 167 (182)
T ss_pred hHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence 334455789999999944332222 345699999888753
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.56 E-value=2.2e-14 Score=103.91 Aligned_cols=104 Identities=18% Similarity=0.069 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHhCC--CCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccccc--------CcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL--------RPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~--f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~--------~~~~~~~a~~~~~~~ 70 (111)
|||||||+++++... +...+.+|.-..+...+.+++. .+.+|||+|+.++... ...+++++|+++.++
T Consensus 213 nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~ 290 (442)
T TIGR00450 213 NVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVL 290 (442)
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 799999999999875 3455555544334566677654 4689999999765432 346889999877665
Q ss_pred hhc---------------CCccEEecccccchhhh--hchhc--cCceEEccccc
Q psy13093 71 LHA---------------GHPVRFPRGRKIRIMQM--IGFRD--RLLWGSKQARE 106 (111)
Q Consensus 71 ~~~---------------~~~~~~~~gnk~dl~~~--~~~~~--~~~~~e~SAk~ 106 (111)
+.. .+.++++++||+|+... ..+.. +++++++|||+
T Consensus 291 D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 291 DASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred ECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec
Confidence 521 24568999999999543 11111 56789999997
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.55 E-value=1.4e-14 Score=105.14 Aligned_cols=108 Identities=19% Similarity=0.079 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccccc--------CcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL--------RPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~--------~~~~~~~a~~~~~~~ 70 (111)
|||||||+++++.... ..++..|..+.....+.+++ ..+.+|||+|..++... ...+++++|+++.++
T Consensus 225 nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~Vv 302 (449)
T PRK05291 225 NVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVL 302 (449)
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 7999999999998763 44444444333345566655 46799999998765432 234788999877766
Q ss_pred hhc--------------CCccEEecccccchhhhhch--hccCceEEcccccccCC
Q psy13093 71 LHA--------------GHPVRFPRGRKIRIMQMIGF--RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~~--------------~~~~~~~~gnk~dl~~~~~~--~~~~~~~e~SAk~~~n~ 110 (111)
+.. .+.++++++||+|+...... .....++++||++|.|+
T Consensus 303 D~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 303 DASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGI 358 (449)
T ss_pred cCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCH
Confidence 521 34568999999999643222 22567899999999885
No 158
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.55 E-value=1.6e-15 Score=112.76 Aligned_cols=110 Identities=15% Similarity=-0.003 Sum_probs=79.5
Q ss_pred CcchHHHHHHHHhCCCCCC----CCCceeeeeEEEEEEC--------Cee-----EEEEEEeCCCcccccccCcccccCC
Q psy13093 1 AVGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVD--------GKP-----INLGLWDTAGQEDYDRLRPLSYPQT 63 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~----~~~t~~~~~~~~i~~~--------~~~-----~~l~iwD~~G~~~~~~~~~~~~~~a 63 (111)
++|||||+.++....+... +.+++|..+...-... ... ..+.+|||+|++.|..++..+++.+
T Consensus 14 d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~a 93 (590)
T TIGR00491 14 DHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALA 93 (590)
T ss_pred CCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhC
Confidence 6899999999998877543 3445565543110000 011 2388999999999999999999999
Q ss_pred ceeeeehhhc----------------CCccEEecccccchhhhhchhccCceEEcccccccCC
Q psy13093 64 WSLRSFALHA----------------GHPVRFPRGRKIRIMQMIGFRDRLLWGSKQAREEKNE 110 (111)
Q Consensus 64 ~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~~~~~~~~~~~e~SAk~~~n~ 110 (111)
|+++++++.. .+.++++++||+|+........+++|+|+||+.+.++
T Consensus 94 D~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 94 DLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred CEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 9877766522 2446899999999975444445889999999987654
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=1.4e-14 Score=105.72 Aligned_cols=108 Identities=15% Similarity=0.032 Sum_probs=72.1
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeeee-EEEEEECCeeEEEEEEeCCCccc--------ccccCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQED--------YDRLRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~--------~~~~~~~~~~~a~~~~~~~ 70 (111)
|||||||++|++...+. ....|.+..+. ...+.+++. .+.+|||+|++. +...+..++++||++++++
T Consensus 48 nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~Vv 125 (472)
T PRK03003 48 NVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVV 125 (472)
T ss_pred CCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 79999999999987642 22334333332 234445544 578999999863 3445667889999887777
Q ss_pred hhc----------------CCccEEecccccchhhhhc-hhc----cC-ceEEcccccccCC
Q psy13093 71 LHA----------------GHPVRFPRGRKIRIMQMIG-FRD----RL-LWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~~----------------~~~~~~~~gnk~dl~~~~~-~~~----~~-~~~e~SAk~~~n~ 110 (111)
+.. .+.++++++||+|+..... ..+ ++ ..+++||++|.|+
T Consensus 126 D~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi 187 (472)
T PRK03003 126 DATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGV 187 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCc
Confidence 622 3457999999999953211 111 22 2478999999986
No 160
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.55 E-value=1.3e-14 Score=87.30 Aligned_cols=86 Identities=22% Similarity=0.236 Sum_probs=62.3
Q ss_pred CcchHHHHHHHHhCCCC--CCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh------
Q psy13093 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------ 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~--~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------ 71 (111)
|||||||+.+|+...+. ..+.++.+..+. ....+......+.+||++|++.+...+...+..+|+++++++
T Consensus 9 g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s 88 (119)
T PF08477_consen 9 GVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES 88 (119)
T ss_dssp TSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH
T ss_pred CCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHH
Confidence 79999999999999886 223333444443 345566677779999999999999988888999999877775
Q ss_pred ----------------hcCCccEEecccccc
Q psy13093 72 ----------------HAGHPVRFPRGRKIR 86 (111)
Q Consensus 72 ----------------~~~~~~~~~~gnk~d 86 (111)
...+.+++++|||.|
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 89 LEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred HHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 234466889999987
No 161
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=1.6e-14 Score=104.16 Aligned_cols=108 Identities=15% Similarity=-0.030 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccc--------ccccCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED--------YDRLRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~--------~~~~~~~~~~~a~~~~~~~ 70 (111)
|||||||++++..... ...+..+........+.+++ ..+.+|||+|++. +......+++++|+++.++
T Consensus 11 ~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vv 88 (435)
T PRK00093 11 NVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVV 88 (435)
T ss_pred CCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 7999999999998763 33333322222334555555 7899999999987 2333456788999877666
Q ss_pred hhc----------------CCccEEecccccchhhh-hchhc----cC-ceEEcccccccCC
Q psy13093 71 LHA----------------GHPVRFPRGRKIRIMQM-IGFRD----RL-LWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~~----------------~~~~~~~~gnk~dl~~~-~~~~~----~~-~~~e~SAk~~~n~ 110 (111)
+.. .+.++++++||+|+... ....+ ++ .++++||++|.|+
T Consensus 89 d~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv 150 (435)
T PRK00093 89 DGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGI 150 (435)
T ss_pred ECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCH
Confidence 521 14568999999997431 11111 44 3789999999885
No 162
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.54 E-value=3.4e-14 Score=108.35 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=78.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
++|||||+.++....+.....+.+..... ..+.+++ ..+.||||+|++.|..++..+++.+|+++++++
T Consensus 300 d~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~q 377 (787)
T PRK05306 300 DHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQ 377 (787)
T ss_pred CCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHh
Confidence 68999999999988876654443332221 2344443 578999999999999999999999998766664
Q ss_pred --------hcCCccEEecccccchhhh----h-c-hh----------ccCceEEcccccccCC
Q psy13093 72 --------HAGHPVRFPRGRKIRIMQM----I-G-FR----------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------~~~~~~~~~~gnk~dl~~~----~-~-~~----------~~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... + . +. .+++++++||++|.|+
T Consensus 378 T~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 378 TIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred HHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 1233468999999999421 1 0 01 1367999999999986
No 163
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.53 E-value=2.4e-14 Score=90.78 Aligned_cols=108 Identities=19% Similarity=0.070 Sum_probs=65.2
Q ss_pred CcchHHHHHHHHhCCCCC-CC-CCceeeeeEEEEEECCeeEEEEEEeCCCcc----cccccCccccc---CCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPG-EY-IPTVFDNYSANVMVDGKPINLGLWDTAGQE----DYDRLRPLSYP---QTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~-~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~----~~~~~~~~~~~---~a~~~~~~~~ 71 (111)
|||||||++++....... .+ .+|..... ..+.+++ ...+.+|||+|+. .++.+...+++ .+|+++.+.+
T Consensus 10 ~~GKStl~~~l~~~~~~v~~~~~~t~~~~~-~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D 87 (170)
T cd01898 10 NAGKSTLLSAISNAKPKIADYPFTTLVPNL-GVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVID 87 (170)
T ss_pred CCCHHHHHHHHhcCCccccCCCccccCCcc-eEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEe
Confidence 799999999998654321 11 11211111 1122222 3589999999974 33345555555 4887766655
Q ss_pred hcC-----------------------CccEEecccccchhhhhc-------hhc---cCceEEcccccccCC
Q psy13093 72 HAG-----------------------HPVRFPRGRKIRIMQMIG-------FRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~~~-----------------------~~~~~~~gnk~dl~~~~~-------~~~---~~~~~e~SAk~~~n~ 110 (111)
... ..++++++||+|+..... ... +..++++||++|.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 88 LSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred cCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 321 345789999999833111 111 467899999999875
No 164
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.53 E-value=3.1e-14 Score=106.04 Aligned_cols=108 Identities=15% Similarity=-0.013 Sum_probs=79.0
Q ss_pred CcchHHHHHHHHh---CCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc---
Q psy13093 1 AVGKTCLLISYTT---NAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA--- 73 (111)
Q Consensus 1 gvGKssl~~~~~~---~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~--- 73 (111)
++|||||++++.. +.+.+++.+++..++. ..+.+++ ..+.+||++|+++|......++.++|+++++++..
T Consensus 10 d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~ 87 (581)
T TIGR00475 10 DHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGV 87 (581)
T ss_pred CCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC
Confidence 6899999999985 5566666666655543 3455554 78999999999999888788889999877766521
Q ss_pred -------------CCcc-EEecccccchhhhh----------chh------ccCceEEcccccccCC
Q psy13093 74 -------------GHPV-RFPRGRKIRIMQMI----------GFR------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 74 -------------~~~~-~~~~gnk~dl~~~~----------~~~------~~~~~~e~SAk~~~n~ 110 (111)
.+.+ .+++.||+|+.... ... .+++++++||++|.|+
T Consensus 88 ~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 88 MTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI 154 (581)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence 2234 89999999984211 110 1467899999999986
No 165
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.53 E-value=2.4e-14 Score=108.51 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=79.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeee---eEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-----
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDN---YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~---~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----- 72 (111)
++|||||+.++....+.....+.+... |...+..++....+.+|||+|++.|..++..+++.+|+++++++.
T Consensus 254 dvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~ 333 (742)
T CHL00189 254 DHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK 333 (742)
T ss_pred CCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC
Confidence 689999999999888765544333222 222333445678999999999999999999999999987776641
Q ss_pred -----------cCCccEEecccccchhhhh------ch------h----ccCceEEcccccccCC
Q psy13093 73 -----------AGHPVRFPRGRKIRIMQMI------GF------R----DRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -----------~~~~~~~~~gnk~dl~~~~------~~------~----~~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.... .+ . ..++++++||++|.|+
T Consensus 334 ~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 334 PQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred hhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence 1234689999999995310 01 0 1367899999999885
No 166
>PRK15494 era GTPase Era; Provisional
Probab=99.52 E-value=4.3e-14 Score=99.42 Aligned_cols=107 Identities=19% Similarity=0.039 Sum_probs=67.7
Q ss_pred CcchHHHHHHHHhCCCC---CCCCCceeeeeEEEEEECCeeEEEEEEeCCCccc-ccccCc-------ccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFP---GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED-YDRLRP-------LSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~---~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~-~~~~~~-------~~~~~a~~~~~~ 69 (111)
|||||||+++++..++. ....+|.. .....+..++ ..+.+|||+|+.+ +..+.+ .++++||+++++
T Consensus 62 nvGKSTLin~l~~~k~~ivs~k~~tTr~-~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~V 138 (339)
T PRK15494 62 NSGKSTLLNRIIGEKLSIVTPKVQTTRS-IITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLI 138 (339)
T ss_pred CCCHHHHHHHHhCCceeeccCCCCCccC-cEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEE
Confidence 79999999999988774 22233322 2233445554 4579999999843 333332 246789987666
Q ss_pred hhh----------------cCCccEEecccccchhhh-----hchhc----cCceEEcccccccCC
Q psy13093 70 ALH----------------AGHPVRFPRGRKIRIMQM-----IGFRD----RLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~~----------------~~~~~~~~~gnk~dl~~~-----~~~~~----~~~~~e~SAk~~~n~ 110 (111)
.+. ..+.+.++++||+|+... ..... ...++++||++|.|+
T Consensus 139 vD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv 204 (339)
T PRK15494 139 IDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNI 204 (339)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCH
Confidence 541 112345679999998432 11111 246899999999985
No 167
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.52 E-value=2.4e-14 Score=101.05 Aligned_cols=107 Identities=13% Similarity=-0.016 Sum_probs=70.0
Q ss_pred CcchHHHHHHHHhCCCCC-C-CCCceeeeeEEEEEECCeeEEEEEEeCCCc---------ccccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPG-E-YIPTVFDNYSANVMVDGKPINLGLWDTAGQ---------EDYDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~-~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~---------~~~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||++++++..+.. + ..+|.. .....+.+++ ...+.+|||+|. +.|+..+ ..+++||+++.+
T Consensus 199 NvGKSSLln~L~~~~~~v~~~~~tT~d-~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~V 275 (351)
T TIGR03156 199 NAGKSTLFNALTGADVYAADQLFATLD-PTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHV 275 (351)
T ss_pred CCCHHHHHHHHhCCceeeccCCccccC-CEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEE
Confidence 799999999999876532 2 233432 2234556643 247889999998 2343333 247889987666
Q ss_pred hhh--------------------cCCccEEecccccchhhhhchhc----cCceEEcccccccCC
Q psy13093 70 ALH--------------------AGHPVRFPRGRKIRIMQMIGFRD----RLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~~--------------------~~~~~~~~~gnk~dl~~~~~~~~----~~~~~e~SAk~~~n~ 110 (111)
.+. ..+.++++++||+|+........ ...++.+||++|.|+
T Consensus 276 vD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 276 VDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred EECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCH
Confidence 651 12456899999999953222111 245799999999885
No 168
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.50 E-value=6.7e-14 Score=88.99 Aligned_cols=108 Identities=17% Similarity=0.037 Sum_probs=67.9
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCc-eeeeeEEEEEECCeeEEEEEEeCCCccc----ccccCc---ccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPT-VFDNYSANVMVDGKPINLGLWDTAGQED----YDRLRP---LSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t-~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~~~~~~---~~~~~a~~~~~~~~ 71 (111)
|||||||++++....+ ...+.++ ....+ ..+.++ ....+.+||++|..+ .+.++. .+++++++++.+.+
T Consensus 6 ~~GKStll~~l~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d 83 (176)
T cd01881 6 NVGKSTLLNALTNAKPKVANYPFTTLEPNL-GVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVD 83 (176)
T ss_pred CCcHHHHHHHHhcCCccccCCCceeecCcc-eEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEe
Confidence 7999999999998764 2333322 22222 223333 145689999999743 233332 34677887666554
Q ss_pred hc---------------------------------CCccEEecccccchhhhhch----------hccCceEEccccccc
Q psy13093 72 HA---------------------------------GHPVRFPRGRKIRIMQMIGF----------RDRLLWGSKQAREEK 108 (111)
Q Consensus 72 ~~---------------------------------~~~~~~~~gnk~dl~~~~~~----------~~~~~~~e~SAk~~~ 108 (111)
.. .+.++++++||+|+...... .....++++||+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (176)
T cd01881 84 ASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEE 163 (176)
T ss_pred ccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhc
Confidence 22 23568999999999431111 116678999999998
Q ss_pred CC
Q psy13093 109 NE 110 (111)
Q Consensus 109 n~ 110 (111)
|+
T Consensus 164 gl 165 (176)
T cd01881 164 GL 165 (176)
T ss_pred CH
Confidence 75
No 169
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.49 E-value=8.8e-14 Score=89.26 Aligned_cols=110 Identities=15% Similarity=-0.097 Sum_probs=76.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCcee--------------eeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVF--------------DNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~--------------~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
|+|||||++.++...+...+.++.. .... ....+......+.+||++|+.++...+..+++.+|+
T Consensus 9 ~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~ 88 (189)
T cd00881 9 DHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDG 88 (189)
T ss_pred CCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCE
Confidence 7999999999998877654433221 1111 111222336789999999999999999999999999
Q ss_pred eeeehhhc----------------CCccEEecccccchhhhhc----------h----------------hccCceEEcc
Q psy13093 66 LRSFALHA----------------GHPVRFPRGRKIRIMQMIG----------F----------------RDRLLWGSKQ 103 (111)
Q Consensus 66 ~~~~~~~~----------------~~~~~~~~gnk~dl~~~~~----------~----------------~~~~~~~e~S 103 (111)
++.+.+.. .+.+++++.||+|+..... . .....++++|
T Consensus 89 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 168 (189)
T cd00881 89 AILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGS 168 (189)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEe
Confidence 77776521 2456899999999853100 0 0145679999
Q ss_pred cccccCC
Q psy13093 104 AREEKNE 110 (111)
Q Consensus 104 Ak~~~n~ 110 (111)
|++|+|+
T Consensus 169 a~~g~gi 175 (189)
T cd00881 169 ALTGIGV 175 (189)
T ss_pred cccCcCH
Confidence 9999875
No 170
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.48 E-value=1.9e-13 Score=85.12 Aligned_cols=107 Identities=12% Similarity=0.005 Sum_probs=71.3
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccccccc--------CcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRL--------RPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~--------~~~~~~~a~~~~~~ 69 (111)
|+|||||++++....+ ...+ |.....+ ...+..+ ...+.+|||+|..++... ...+++.+++++.+
T Consensus 11 ~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 87 (157)
T cd04164 11 NVGKSSLLNALAGRDRAIVSDI-AGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFV 87 (157)
T ss_pred CCCHHHHHHHHHCCceEeccCC-CCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEE
Confidence 7999999999998764 2233 3333333 2333333 467899999998766432 22456788876666
Q ss_pred hh--------------hcCCccEEecccccchhhhhchh---ccCceEEcccccccCC
Q psy13093 70 AL--------------HAGHPVRFPRGRKIRIMQMIGFR---DRLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~--------------~~~~~~~~~~gnk~dl~~~~~~~---~~~~~~e~SAk~~~n~ 110 (111)
.+ .....++++++||+|+....... ...+++++||+++.|+
T Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 88 IDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred EECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCH
Confidence 54 23456799999999996433221 1567899999999875
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.48 E-value=5.9e-14 Score=91.28 Aligned_cols=110 Identities=15% Similarity=-0.047 Sum_probs=66.7
Q ss_pred CcchHHHHHHHHhC----CCCCCC-----CCceeeeeE-EEEE----------ECCeeEEEEEEeCCCcccccccCcccc
Q psy13093 1 AVGKTCLLISYTTN----AFPGEY-----IPTVFDNYS-ANVM----------VDGKPINLGLWDTAGQEDYDRLRPLSY 60 (111)
Q Consensus 1 gvGKssl~~~~~~~----~f~~~~-----~~t~~~~~~-~~i~----------~~~~~~~l~iwD~~G~~~~~~~~~~~~ 60 (111)
|||||||+.+|+.. .+...+ ..|++..+. ..+. .++..+.+.+|||+|+..+....-...
T Consensus 10 ~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 89 (192)
T cd01889 10 DSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGA 89 (192)
T ss_pred CCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHH
Confidence 69999999999972 222222 245555443 2222 124478999999999965422111223
Q ss_pred cCCceeeeehhhc----------------CCccEEecccccchhhhh-------c--------h----hccCceEEcccc
Q psy13093 61 PQTWSLRSFALHA----------------GHPVRFPRGRKIRIMQMI-------G--------F----RDRLLWGSKQAR 105 (111)
Q Consensus 61 ~~a~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~~-------~--------~----~~~~~~~e~SAk 105 (111)
+.+|+++.+.+.. .+.+.++++||+|+.... . + ..+.+++.+||+
T Consensus 90 ~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~ 169 (192)
T cd01889 90 QIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAK 169 (192)
T ss_pred hhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEecc
Confidence 4566765554411 234688999999984210 0 1 124678999999
Q ss_pred cccCC
Q psy13093 106 EEKNE 110 (111)
Q Consensus 106 ~~~n~ 110 (111)
+|.|+
T Consensus 170 ~g~gi 174 (192)
T cd01889 170 PGGGE 174 (192)
T ss_pred CCCCH
Confidence 99986
No 172
>KOG0076|consensus
Probab=99.47 E-value=9.9e-15 Score=92.60 Aligned_cols=108 Identities=20% Similarity=0.174 Sum_probs=84.2
Q ss_pred CcchHHHHHHHHhCC-------CCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--
Q psy13093 1 AVGKTCLLISYTTNA-------FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~-------f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-- 71 (111)
++|||+|+.+..... -+....||+|.+.. ++.++ +..+.+||.+||+..+++|..||..+++++.+.|
T Consensus 27 nAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig-~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~ 103 (197)
T KOG0076|consen 27 NAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG-TIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDAT 103 (197)
T ss_pred cCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec-ceeec--cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCC
Confidence 589999998876431 22456788888763 33343 5678999999999999999999999999988887
Q ss_pred -------------------hcCCccEEecccccchhhhhchhc--------------cCceEEcccccccCCC
Q psy13093 72 -------------------HAGHPVRFPRGRKIRIMQMIGFRD--------------RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -------------------~~~~~~~~~~gnk~dl~~~~~~~~--------------~~~~~e~SAk~~~n~~ 111 (111)
.....+++..+||.|+....+.++ +++|..+||-+|+|+|
T Consensus 104 ~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~ 176 (197)
T KOG0076|consen 104 DRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVK 176 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHH
Confidence 344557889999999965444443 7889999999999875
No 173
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.46 E-value=1.5e-13 Score=98.95 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=71.7
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCc--------ccccccCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ--------EDYDRLRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~--------~~~~~~~~~~~~~a~~~~~~~ 70 (111)
|||||||++++..... ...+..+.-+.....+.+++. .+.+|||+|. +.+......+++.+|+++.+.
T Consensus 9 nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vv 86 (429)
T TIGR03594 9 NVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVV 86 (429)
T ss_pred CCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEE
Confidence 7999999999998763 223322222222344445444 5999999996 445555667889999876666
Q ss_pred hh----------------cCCccEEecccccchhhhhch-hc----cC-ceEEcccccccCC
Q psy13093 71 LH----------------AGHPVRFPRGRKIRIMQMIGF-RD----RL-LWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~----------------~~~~~~~~~gnk~dl~~~~~~-~~----~~-~~~e~SAk~~~n~ 110 (111)
+. ..+.++++++||+|+...... .+ ++ .++++||++|.++
T Consensus 87 D~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 87 DGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCCh
Confidence 51 124568999999998532211 11 44 6799999999875
No 174
>KOG0074|consensus
Probab=99.46 E-value=2e-13 Score=84.41 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=78.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------- 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------- 73 (111)
++|||+|++++...+ +....||-|++..+ +..+ ..+.|.+||.+||...+..|..||.+.|++|.+.++.
T Consensus 27 nAGKTT~LKqL~sED-~~hltpT~GFn~k~-v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE 103 (185)
T KOG0074|consen 27 NAGKTTFLKQLKSED-PRHLTPTNGFNTKK-VEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEE 103 (185)
T ss_pred CCcchhHHHHHccCC-hhhccccCCcceEE-Eeec-CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHH
Confidence 579999999987654 45678998987543 3333 4589999999999999999999999999998888732
Q ss_pred --------------CCccEEecccccchhhhhchhc-------------cCceEEcccccccC
Q psy13093 74 --------------GHPVRFPRGRKIRIMQMIGFRD-------------RLLWGSKQAREEKN 109 (111)
Q Consensus 74 --------------~~~~~~~~gnk~dl~~~~~~~~-------------~~~~~e~SAk~~~n 109 (111)
...++.+-+||.|+.-+....+ -....+|||..++.
T Consensus 104 ~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 104 ISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred HHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccC
Confidence 2334677889999843332222 12347788877654
No 175
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.46 E-value=1.1e-13 Score=89.77 Aligned_cols=108 Identities=14% Similarity=-0.076 Sum_probs=70.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCc----------ccccccCcccccCCc---eee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ----------EDYDRLRPLSYPQTW---SLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~----------~~~~~~~~~~~~~a~---~~~ 67 (111)
|||||||+++++..+|...+.++.|....... ......+.||||+|. +++..+...|++.++ +++
T Consensus 34 ~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (196)
T PRK00454 34 NVGKSSLINALTNRKNLARTSKTPGRTQLINF--FEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVV 111 (196)
T ss_pred CCCHHHHHHHHhCCCCcccccCCCCceeEEEE--EecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEE
Confidence 79999999999998877777777765432111 112367999999994 455556666776654 333
Q ss_pred eehh----------------hcCCccEEecccccchhhhhc-------hhc-----cCceEEcccccccCC
Q psy13093 68 SFAL----------------HAGHPVRFPRGRKIRIMQMIG-------FRD-----RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~----------------~~~~~~~~~~gnk~dl~~~~~-------~~~-----~~~~~e~SAk~~~n~ 110 (111)
.+.+ ...+.++++++||+|+..... ..+ ...++++||+.|.|+
T Consensus 112 ~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi 182 (196)
T PRK00454 112 LLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGI 182 (196)
T ss_pred EEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCH
Confidence 3222 112334789999999843110 111 467899999999875
No 176
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.44 E-value=7.2e-13 Score=83.61 Aligned_cols=108 Identities=16% Similarity=0.030 Sum_probs=67.3
Q ss_pred CcchHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccccc-----------CcccccCCceee
Q psy13093 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL-----------RPLSYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~--~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~-----------~~~~~~~a~~~~ 67 (111)
|+|||||++++....+. ....++........+..++. .+.+||++|..+.... ...+++++|+++
T Consensus 12 ~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi 89 (174)
T cd01895 12 NVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVL 89 (174)
T ss_pred CCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEE
Confidence 79999999999987532 22222222222334444444 4679999997654211 113456888766
Q ss_pred eehh----------------hcCCccEEecccccchhhh--hch-------hc------cCceEEcccccccCC
Q psy13093 68 SFAL----------------HAGHPVRFPRGRKIRIMQM--IGF-------RD------RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~----------------~~~~~~~~~~gnk~dl~~~--~~~-------~~------~~~~~e~SAk~~~n~ 110 (111)
.+.+ ...+.++++++||+|+... ... .+ ...++++||++|.|+
T Consensus 90 ~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 163 (174)
T cd01895 90 LVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGV 163 (174)
T ss_pred EEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCH
Confidence 6654 1234568899999999533 111 11 367899999999885
No 177
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.42 E-value=2.8e-13 Score=101.25 Aligned_cols=110 Identities=16% Similarity=0.039 Sum_probs=75.3
Q ss_pred CcchHHHHHHHHhC--CC-----CCCCC------CceeeeeE-EEEEE-----CCeeEEEEEEeCCCcccccccCccccc
Q psy13093 1 AVGKTCLLISYTTN--AF-----PGEYI------PTVFDNYS-ANVMV-----DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f-----~~~~~------~t~~~~~~-~~i~~-----~~~~~~l~iwD~~G~~~~~~~~~~~~~ 61 (111)
++|||||+.|++.. .+ ...+. .+.|..+. ..+.+ ++..+.+++|||+|+.+|...+..+++
T Consensus 17 d~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~ 96 (600)
T PRK05433 17 DHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLA 96 (600)
T ss_pred CCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHH
Confidence 68999999999863 21 11111 12233332 22222 566899999999999999999999999
Q ss_pred CCceeeeehhhc----------------CCccEEecccccchhhhh------chhc--cCc---eEEcccccccCC
Q psy13093 62 QTWSLRSFALHA----------------GHPVRFPRGRKIRIMQMI------GFRD--RLL---WGSKQAREEKNE 110 (111)
Q Consensus 62 ~a~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~~------~~~~--~~~---~~e~SAk~~~n~ 110 (111)
.+|+++++++.. .+.+++++.||+|+.... ...+ ++. ++.+||++|.|+
T Consensus 97 ~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI 172 (600)
T PRK05433 97 ACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGI 172 (600)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCH
Confidence 999977777621 234588999999985321 1111 333 789999999985
No 178
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.42 E-value=5.9e-13 Score=90.96 Aligned_cols=108 Identities=13% Similarity=-0.020 Sum_probs=68.8
Q ss_pred CcchHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccc-c----c---CcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD-R----L---RPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~--~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~-~----~---~~~~~~~a~~~~~~~ 70 (111)
|||||||++++++.++. .....|...... .+...+ ...+.+|||+|..... . + ...+++++|+++.+.
T Consensus 10 nvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~Vv 87 (270)
T TIGR00436 10 NVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVV 87 (270)
T ss_pred CCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEE
Confidence 79999999999987653 333344443332 222222 3568999999975431 1 1 235678899876665
Q ss_pred h---------------hcCCccEEecccccchhhhhch-------hc--c-CceEEcccccccCC
Q psy13093 71 L---------------HAGHPVRFPRGRKIRIMQMIGF-------RD--R-LLWGSKQAREEKNE 110 (111)
Q Consensus 71 ~---------------~~~~~~~~~~gnk~dl~~~~~~-------~~--~-~~~~e~SAk~~~n~ 110 (111)
+ ...+.+.+++.||+|+...... .. + ..++.+||++|.|+
T Consensus 88 D~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 88 DSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred ECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 4 1123468899999999421111 11 2 26799999999985
No 179
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.40 E-value=1.4e-12 Score=80.64 Aligned_cols=109 Identities=14% Similarity=-0.062 Sum_probs=71.4
Q ss_pred CcchHHHHHHHHhCCCC-C-CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCc-------ccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFP-G-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP-------LSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~-~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~-------~~~~~a~~~~~~~~ 71 (111)
|+|||||++++....+. . ...++...........+ ....+.+||++|+..+..... .+++.+|+++.+.+
T Consensus 6 gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~ 84 (163)
T cd00880 6 NAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVD 84 (163)
T ss_pred CCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEe
Confidence 79999999999876543 1 22232222222222222 257899999999988765444 37788887655544
Q ss_pred ----------------hcCCccEEecccccchhhh---hc----------hhccCceEEcccccccCC
Q psy13093 72 ----------------HAGHPVRFPRGRKIRIMQM---IG----------FRDRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------------~~~~~~~~~~gnk~dl~~~---~~----------~~~~~~~~e~SAk~~~n~ 110 (111)
...+.+.+++.||+|+... .. .....+++++||+++.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 85 ADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred CCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 2345568999999998331 11 111678899999999876
No 180
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=7.9e-13 Score=100.62 Aligned_cols=108 Identities=19% Similarity=0.103 Sum_probs=71.6
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccc----------ccccC-cccccCCceee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED----------YDRLR-PLSYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~----------~~~~~-~~~~~~a~~~~ 67 (111)
|||||||+++++..++ ..++.+|....+...+.+++.. +.+|||+|..+ |..++ ..+++.+|+++
T Consensus 460 nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvi 537 (712)
T PRK09518 460 NVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELAL 537 (712)
T ss_pred CCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEE
Confidence 7999999999998874 4555555544445556666665 55899999642 22222 23468899877
Q ss_pred eehhh----------------cCCccEEecccccchhhhhc---hh----c------cCceEEcccccccCC
Q psy13093 68 SFALH----------------AGHPVRFPRGRKIRIMQMIG---FR----D------RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~~----------------~~~~~~~~~gnk~dl~~~~~---~~----~------~~~~~e~SAk~~~n~ 110 (111)
++.+. ..+.++++++||+|+..... .. . ..+.+.+||++|.|+
T Consensus 538 lViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv 609 (712)
T PRK09518 538 FLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHT 609 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCH
Confidence 77651 12456999999999953111 11 1 123478999999986
No 181
>PRK10218 GTP-binding protein; Provisional
Probab=99.39 E-value=1.3e-12 Score=97.76 Aligned_cols=109 Identities=12% Similarity=-0.078 Sum_probs=80.0
Q ss_pred CcchHHHHHHHHh--CCCCCCC------------CCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTT--NAFPGEY------------IPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~--~~f~~~~------------~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
++|||||+.+++. +.|...+ .++.|..+. +...+....+++.+|||+|+.+|...+..+++.+|+
T Consensus 15 d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg 94 (607)
T PRK10218 15 DHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDS 94 (607)
T ss_pred CCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCE
Confidence 6899999999997 5554432 234566553 455566778999999999999999999999999999
Q ss_pred eeeehhhc----------------CCccEEecccccchhhhhc---------h------h---ccCceEEcccccccC
Q psy13093 66 LRSFALHA----------------GHPVRFPRGRKIRIMQMIG---------F------R---DRLLWGSKQAREEKN 109 (111)
Q Consensus 66 ~~~~~~~~----------------~~~~~~~~gnk~dl~~~~~---------~------~---~~~~~~e~SAk~~~n 109 (111)
++++++.. .+.+.+++.||+|+..+.. . . ..++.+.+||++|+|
T Consensus 95 ~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 95 VLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred EEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 87777622 2234688999999843211 0 0 146679999999985
No 182
>KOG3883|consensus
Probab=99.37 E-value=3e-12 Score=80.15 Aligned_cols=106 Identities=22% Similarity=0.149 Sum_probs=80.2
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEC-CeeEEEEEEeCCCcccc-cccCcccccCCceeeeehh-----
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDY-DRLRPLSYPQTWSLRSFAL----- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~-~~~~~~~~~~a~~~~~~~~----- 71 (111)
+||||+|+.|++.+.. ..++.||+.+-|.-.+..+ +..-.+.++||+|-..+ ..+.++|+.-+|++++++.
T Consensus 19 ~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e 98 (198)
T KOG3883|consen 19 SVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE 98 (198)
T ss_pred cccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH
Confidence 6999999999997765 4568999999987655554 55678999999998888 6788999999999877775
Q ss_pred ----------------hcCCccEEecccccchhhhhch--------hc--cCceEEccccc
Q psy13093 72 ----------------HAGHPVRFPRGRKIRIMQMIGF--------RD--RLLWGSKQARE 106 (111)
Q Consensus 72 ----------------~~~~~~~~~~gnk~dl~~~~~~--------~~--~~~~~e~SAk~ 106 (111)
+....++++.|||+|+.+.+.. +. ....+|++|+.
T Consensus 99 Sf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 99 SFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred HHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence 3334459999999999432211 11 55667777764
No 183
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.36 E-value=2.8e-13 Score=101.01 Aligned_cols=109 Identities=15% Similarity=0.034 Sum_probs=73.9
Q ss_pred CcchHHHHHHHHhCCCCCC----CCCceeeeeEEEEEE---CCeeE----------EEEEEeCCCcccccccCcccccCC
Q psy13093 1 AVGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMV---DGKPI----------NLGLWDTAGQEDYDRLRPLSYPQT 63 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~----~~~t~~~~~~~~i~~---~~~~~----------~l~iwD~~G~~~~~~~~~~~~~~a 63 (111)
++|||||+.++....+... +.+++|..+...-.. .+..+ .+.+|||+|++.|..++...++.+
T Consensus 16 ~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~a 95 (586)
T PRK04004 16 DHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALA 95 (586)
T ss_pred CCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhC
Confidence 6899999999986544222 234666554311000 11111 268999999999999999899999
Q ss_pred ceeeeehhhc----------------CCccEEecccccchhhhhchhccCceEEcccccccC
Q psy13093 64 WSLRSFALHA----------------GHPVRFPRGRKIRIMQMIGFRDRLLWGSKQAREEKN 109 (111)
Q Consensus 64 ~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~~~~~~~~~~~e~SAk~~~n 109 (111)
|+++++.+.. .+.++++++||+|+........++.|+++|++++.|
T Consensus 96 D~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 96 DIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred CEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9877766522 245689999999986333333478888998876654
No 184
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.35 E-value=2.8e-12 Score=89.94 Aligned_cols=104 Identities=15% Similarity=0.044 Sum_probs=65.8
Q ss_pred CcchHHHHHHHHhCCC-CC-----CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccc----cccCccccc---CCceee
Q psy13093 1 AVGKTCLLISYTTNAF-PG-----EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY----DRLRPLSYP---QTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~-----~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~----~~~~~~~~~---~a~~~~ 67 (111)
+||||||+++++..+. .. ...|+++. +.+++ ...+.|||++|..+. ..+...|++ .+++++
T Consensus 167 naGKSTLl~~lt~~~~~va~y~fTT~~p~ig~-----v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll 240 (329)
T TIGR02729 167 NAGKSTLISAVSAAKPKIADYPFTTLVPNLGV-----VRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLL 240 (329)
T ss_pred CCCHHHHHHHHhcCCccccCCCCCccCCEEEE-----EEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEE
Confidence 6999999999997642 11 22333332 22332 367899999997532 234444544 577765
Q ss_pred eehhhc-------------------------CCccEEecccccchhhhhc-------hhc--cCceEEcccccccCC
Q psy13093 68 SFALHA-------------------------GHPVRFPRGRKIRIMQMIG-------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~~~-------------------------~~~~~~~~gnk~dl~~~~~-------~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+.. .+.+.++++||+|+..... +.+ +..++++||++++|+
T Consensus 241 ~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI 317 (329)
T TIGR02729 241 HLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGL 317 (329)
T ss_pred EEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCH
Confidence 555421 2456889999999843221 111 467899999999885
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.35 E-value=3.8e-12 Score=96.93 Aligned_cols=108 Identities=15% Similarity=-0.044 Sum_probs=68.7
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeeeeE-EEEEECCeeEEEEEEeCCCccc--------ccccCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQED--------YDRLRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~--------~~~~~~~~~~~a~~~~~~~ 70 (111)
|||||||+++++...+. ....|.+..+.. .....+ ...+.+|||+|.+. +......+++.+|++++++
T Consensus 285 nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~Vv 362 (712)
T PRK09518 285 NVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVV 362 (712)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEE
Confidence 79999999999976541 112233322221 222333 35688999999764 2334456788999877776
Q ss_pred h----------------hcCCccEEecccccchhhhhch-hc----cC-ceEEcccccccCC
Q psy13093 71 L----------------HAGHPVRFPRGRKIRIMQMIGF-RD----RL-LWGSKQAREEKNE 110 (111)
Q Consensus 71 ~----------------~~~~~~~~~~gnk~dl~~~~~~-~~----~~-~~~e~SAk~~~n~ 110 (111)
+ ...+.++++++||+|+...... .+ ++ ..+++||++|.|+
T Consensus 363 Da~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI 424 (712)
T PRK09518 363 DGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGV 424 (712)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCc
Confidence 5 2234568999999998532111 11 11 2468999999986
No 186
>PRK11058 GTPase HflX; Provisional
Probab=99.34 E-value=2e-12 Score=93.41 Aligned_cols=108 Identities=16% Similarity=-0.028 Sum_probs=66.9
Q ss_pred CcchHHHHHHHHhCCCCC-CC-CCceeeeeEEEEEECCeeEEEEEEeCCCcccc--cccCc------ccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAFPG-EY-IPTVFDNYSANVMVDGKPINLGLWDTAGQEDY--DRLRP------LSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~-~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~--~~~~~------~~~~~a~~~~~~~ 70 (111)
|||||||+++++..++.. +. .+|.. .....+.+.+. ..+.+|||+|..+. ..++. ..+++||+++.+.
T Consensus 207 NaGKSSLlN~Lt~~~~~v~~~~~tTld-~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~Vv 284 (426)
T PRK11058 207 NAGKSTLFNRITEARVYAADQLFATLD-PTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVV 284 (426)
T ss_pred CCCHHHHHHHHhCCceeeccCCCCCcC-CceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 799999999999866432 21 22221 12234555442 25679999998442 22222 3468899876666
Q ss_pred hh--------------------cCCccEEecccccchhhhh----ch-hccCc-eEEcccccccCC
Q psy13093 71 LH--------------------AGHPVRFPRGRKIRIMQMI----GF-RDRLL-WGSKQAREEKNE 110 (111)
Q Consensus 71 ~~--------------------~~~~~~~~~gnk~dl~~~~----~~-~~~~~-~~e~SAk~~~n~ 110 (111)
+. ..+.++++++||+|+.... .. ..+++ ++.+||++|.|+
T Consensus 285 DaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 285 DAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred eCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCH
Confidence 51 1245689999999995321 11 12444 488999999885
No 187
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.34 E-value=8.6e-13 Score=83.65 Aligned_cols=97 Identities=14% Similarity=0.004 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcc-----cccccCcccccCCceeeeehhhc--
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE-----DYDRLRPLSYPQTWSLRSFALHA-- 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~-----~~~~~~~~~~~~a~~~~~~~~~~-- 73 (111)
|||||||++++.. .+.. ..+|.+..+ +.. .+||++|+. .++.+.. .++++|+++.+++..
T Consensus 11 ~~GKstl~~~l~~-~~~~-~~~~~~v~~------~~~----~~iDtpG~~~~~~~~~~~~~~-~~~~ad~il~v~d~~~~ 77 (158)
T PRK15467 11 GAGKTTLFNALQG-NYTL-ARKTQAVEF------NDK----GDIDTPGEYFSHPRWYHALIT-TLQDVDMLIYVHGANDP 77 (158)
T ss_pred CCCHHHHHHHHcC-CCcc-CccceEEEE------CCC----CcccCCccccCCHHHHHHHHH-HHhcCCEEEEEEeCCCc
Confidence 7999999999664 4421 234444333 222 269999983 2233322 367899876666511
Q ss_pred ------------CCccEEecccccchhhh-----hchhc--c--CceEEcccccccCC
Q psy13093 74 ------------GHPVRFPRGRKIRIMQM-----IGFRD--R--LLWGSKQAREEKNE 110 (111)
Q Consensus 74 ------------~~~~~~~~gnk~dl~~~-----~~~~~--~--~~~~e~SAk~~~n~ 110 (111)
...++++++||+|+... ..... + .+++++||++|+|+
T Consensus 78 ~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 78 ESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred ccccCHHHHhccCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 23357899999998431 11111 3 48999999999985
No 188
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.32 E-value=1.4e-11 Score=82.75 Aligned_cols=69 Identities=16% Similarity=0.021 Sum_probs=41.3
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccc----c---cCcccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD----R---LRPLSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~----~---~~~~~~~~a~~~~~~~~ 71 (111)
|||||||++++.+... ...+..|.-......+.++ ...+++||++|+.+.. . ....+++++|+++.+.+
T Consensus 10 ~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D 86 (233)
T cd01896 10 SVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLD 86 (233)
T ss_pred CCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEec
Confidence 7999999999997652 2223222211112233343 4678999999985433 1 12356888887655543
No 189
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=6.5e-12 Score=88.30 Aligned_cols=108 Identities=17% Similarity=0.020 Sum_probs=64.8
Q ss_pred CcchHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEECCeeEEEEEEeCCCccc----ccccCcc---cccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYI-PTVFDNYSANVMVDGKPINLGLWDTAGQED----YDRLRPL---SYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~-~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~~~~~~~---~~~~a~~~~~~~~ 71 (111)
+||||||+++++..+.. ..|. +|..... -.+.++ ....+.+||++|.-+ ...+... +++.+++++.+++
T Consensus 168 NaGKSTLln~ls~a~~~va~ypfTT~~p~~-G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD 245 (335)
T PRK12299 168 NAGKSTLISAVSAAKPKIADYPFTTLHPNL-GVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVD 245 (335)
T ss_pred CCCHHHHHHHHHcCCCccCCCCCceeCceE-EEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEc
Confidence 69999999999875421 2222 2222111 122232 234689999999742 2234333 3446777666655
Q ss_pred h----------------------cCCccEEecccccchhhhhc--------hhc--cCceEEcccccccCC
Q psy13093 72 H----------------------AGHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~----------------------~~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~~~n~ 110 (111)
. +.+.+.++++||+|+..... ... +..++++||++++|+
T Consensus 246 ~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 246 IEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 1 12456899999999843211 111 467899999999986
No 190
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.31 E-value=6.4e-12 Score=90.77 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=53.9
Q ss_pred ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------------------cCCccEEecccccchhh--hh
Q psy13093 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH--------------------AGHPVRFPRGRKIRIMQ--MI 91 (111)
Q Consensus 34 ~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~--------------------~~~~~~~~~gnk~dl~~--~~ 91 (111)
+....+.+.|||++|+++|.......++++|+++++++. ...+.+++++||+|+.. ..
T Consensus 80 ~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 80 FETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred EccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH
Confidence 344567899999999999865555567889987666541 22235788999999942 10
Q ss_pred -------c---hhc-------cCceEEcccccccCC
Q psy13093 92 -------G---FRD-------RLLWGSKQAREEKNE 110 (111)
Q Consensus 92 -------~---~~~-------~~~~~e~SAk~~~n~ 110 (111)
. +.. .+.++++||++|+|+
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni 195 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNV 195 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccc
Confidence 0 110 367899999999986
No 191
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.30 E-value=9.3e-12 Score=77.81 Aligned_cols=108 Identities=12% Similarity=-0.035 Sum_probs=65.4
Q ss_pred CcchHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccc--------cCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR--------LRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~--~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~--------~~~~~~~~a~~~~~~~ 70 (111)
|+|||||++++....... ...++..... . .......+.+.+||++|...... ....+++.+|+++.+.
T Consensus 13 g~GKttl~~~l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~ 90 (168)
T cd04163 13 NVGKSTLLNALVGQKISIVSPKPQTTRNRI-R-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVV 90 (168)
T ss_pred CCCHHHHHHHHhCCceEeccCCCCceeceE-E-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 799999999998765421 1112211111 1 11233457899999999765432 2334567778755554
Q ss_pred h----------------hcCCccEEecccccchhh-hhchh-------c---cCceEEcccccccCC
Q psy13093 71 L----------------HAGHPVRFPRGRKIRIMQ-MIGFR-------D---RLLWGSKQAREEKNE 110 (111)
Q Consensus 71 ~----------------~~~~~~~~~~gnk~dl~~-~~~~~-------~---~~~~~e~SAk~~~n~ 110 (111)
+ ...+.+.+++.||+|+.. ..... . ...++++||+++.++
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 91 DASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred ECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 3 111246889999999962 11111 1 357799999999875
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=1e-11 Score=89.78 Aligned_cols=108 Identities=17% Similarity=0.056 Sum_probs=68.3
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccccc----------C-cccccCCceee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL----------R-PLSYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~----------~-~~~~~~a~~~~ 67 (111)
|||||||+++++.... ......|........+..++ ..+.+|||+|..+...+ + ..+++.+|+++
T Consensus 183 n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i 260 (435)
T PRK00093 183 NVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVL 260 (435)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEE
Confidence 6999999999996542 23333333333333344444 45678999996543322 1 23677889877
Q ss_pred eehh----------------hcCCccEEecccccchhhhh---chh----------ccCceEEcccccccCC
Q psy13093 68 SFAL----------------HAGHPVRFPRGRKIRIMQMI---GFR----------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~----------------~~~~~~~~~~gnk~dl~~~~---~~~----------~~~~~~e~SAk~~~n~ 110 (111)
++.+ .....+.+++.||+|+.... ... ..++++++||++|.|+
T Consensus 261 lViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv 332 (435)
T PRK00093 261 LVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGV 332 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCH
Confidence 7665 12235688999999985211 111 1467899999999985
No 193
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.28 E-value=1.3e-11 Score=92.67 Aligned_cols=108 Identities=19% Similarity=0.060 Sum_probs=70.8
Q ss_pred CcchHHHHHHHHh---CCCCCCC--CCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh----
Q psy13093 1 AVGKTCLLISYTT---NAFPGEY--IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL---- 71 (111)
Q Consensus 1 gvGKssl~~~~~~---~~f~~~~--~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~---- 71 (111)
++|||||+.++.+ +.+.++. -.|+...|.. +...+ ...+.+||++|+++|.......+.++|+++++++
T Consensus 10 dhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~-~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg 87 (614)
T PRK10512 10 DHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY-WPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG 87 (614)
T ss_pred CCCHHHHHHHHhCCCCccchhcccCCceEEeeeEE-EecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC
Confidence 5899999999984 4555443 4455444432 22222 2347999999999996555566788998666554
Q ss_pred -------------hcCCccEEecccccchhhhh-------chhc--------cCceEEcccccccCC
Q psy13093 72 -------------HAGHPVRFPRGRKIRIMQMI-------GFRD--------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl~~~~-------~~~~--------~~~~~e~SAk~~~n~ 110 (111)
....+..+++.||+|+.... ...+ ..+++.+||++|+|.
T Consensus 88 ~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 88 VMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI 154 (614)
T ss_pred CcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence 12223367999999994211 1111 257899999999986
No 194
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.24 E-value=2.8e-11 Score=79.80 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=51.6
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhhc-----------------CCccEEecccccchhhhh--------
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA-----------------GHPVRFPRGRKIRIMQMI-------- 91 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~gnk~dl~~~~-------- 91 (111)
....+.+|||+|+++|.......++.+|+++++.+.. ..+.++++.||+|+....
T Consensus 75 ~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHH
Confidence 3457889999999998655556788999877666521 223467899999985210
Q ss_pred -chh---c--c---CceEEcccccccCCC
Q psy13093 92 -GFR---D--R---LLWGSKQAREEKNEK 111 (111)
Q Consensus 92 -~~~---~--~---~~~~e~SAk~~~n~~ 111 (111)
... . + ..++.+||++|.|+.
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 111 1 2 347999999999863
No 195
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.24 E-value=6e-12 Score=83.21 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=60.4
Q ss_pred CcchHHHHHHHHhCCCCCC-----------CC------CceeeeeE-E--EEEE---CCeeEEEEEEeCCCcccccccCc
Q psy13093 1 AVGKTCLLISYTTNAFPGE-----------YI------PTVFDNYS-A--NVMV---DGKPINLGLWDTAGQEDYDRLRP 57 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~-----------~~------~t~~~~~~-~--~i~~---~~~~~~l~iwD~~G~~~~~~~~~ 57 (111)
|+|||||+.+++...+... +. ...|..+. . .+.+ ++..+.+.+|||+|+++|...+.
T Consensus 10 ~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~ 89 (213)
T cd04167 10 HHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVA 89 (213)
T ss_pred CCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHH
Confidence 6999999999997654321 11 11122221 1 1111 35678999999999999988888
Q ss_pred ccccCCceeeeehh----------------hcCCccEEecccccch
Q psy13093 58 LSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 58 ~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl 87 (111)
.+++.+|+++.+++ ...+.++++++||+|+
T Consensus 90 ~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 90 AALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 89999998766665 1123558899999996
No 196
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.23 E-value=3.3e-11 Score=86.92 Aligned_cols=108 Identities=16% Similarity=0.053 Sum_probs=64.8
Q ss_pred CcchHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEECCeeEEEEEEeCCCccc----ccccCccccc---CCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYI-PTVFDNYSANVMVDGKPINLGLWDTAGQED----YDRLRPLSYP---QTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~-~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~~~~~~~~~~---~a~~~~~~~~ 71 (111)
+||||||+++++..+.. .+|. +|....+. .+.++ ....+.+||++|... ...+...|++ .+++++.+.+
T Consensus 168 NaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID 245 (424)
T PRK12297 168 NVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVID 245 (424)
T ss_pred CCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEe
Confidence 69999999999976421 1121 12211111 12222 145789999999743 2234444544 4777666555
Q ss_pred hc-------------------------CCccEEecccccchhhh----hchhc--cCceEEcccccccCC
Q psy13093 72 HA-------------------------GHPVRFPRGRKIRIMQM----IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~~-------------------------~~~~~~~~gnk~dl~~~----~~~~~--~~~~~e~SAk~~~n~ 110 (111)
.. .+.+.++++||+|+... ..+.+ ...++.+||++++|+
T Consensus 246 ~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 246 MSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 21 24568899999998432 12222 457899999999885
No 197
>PRK00089 era GTPase Era; Reviewed
Probab=99.22 E-value=3.5e-11 Score=82.90 Aligned_cols=108 Identities=13% Similarity=-0.011 Sum_probs=66.9
Q ss_pred CcchHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccc--------ccCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD--------RLRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~--~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~--------~~~~~~~~~a~~~~~~~ 70 (111)
|||||||++++++.++. .....|....... +... ....+.+|||+|..... ......+.++|+++.+.
T Consensus 15 n~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~-i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vv 92 (292)
T PRK00089 15 NVGKSTLLNALVGQKISIVSPKPQTTRHRIRG-IVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVV 92 (292)
T ss_pred CCCHHHHHHHHhCCceeecCCCCCcccccEEE-EEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 79999999999987652 2222232222222 1122 33789999999975432 22234567888766665
Q ss_pred hh----------------cCCccEEecccccchhhh-hchh-------c---cCceEEcccccccCC
Q psy13093 71 LH----------------AGHPVRFPRGRKIRIMQM-IGFR-------D---RLLWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~----------------~~~~~~~~~gnk~dl~~~-~~~~-------~---~~~~~e~SAk~~~n~ 110 (111)
+. ..+.+.+++.||+|+... .... + ....+.+||++|.|+
T Consensus 93 d~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 93 DADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred eCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 51 113468899999999621 1111 1 356799999999885
No 198
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.22 E-value=2e-11 Score=91.36 Aligned_cols=109 Identities=12% Similarity=-0.038 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHh--CCCCCCCC------------CceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTT--NAFPGEYI------------PTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~--~~f~~~~~------------~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
++|||||+.+++. +.|..... ...|..+. +...+....+++.||||+|+++|...+..+++.+|+
T Consensus 11 d~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~ 90 (594)
T TIGR01394 11 DHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDG 90 (594)
T ss_pred CCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCE
Confidence 5899999999986 44543321 11233332 333445567899999999999999888999999999
Q ss_pred eeeehhhc----------------CCccEEecccccchhhhh--ch-h-------------c--cCceEEcccccccC
Q psy13093 66 LRSFALHA----------------GHPVRFPRGRKIRIMQMI--GF-R-------------D--RLLWGSKQAREEKN 109 (111)
Q Consensus 66 ~~~~~~~~----------------~~~~~~~~gnk~dl~~~~--~~-~-------------~--~~~~~e~SAk~~~n 109 (111)
++++++.. .+.+.+++.||+|+..+. .. . + .++++.+||++|++
T Consensus 91 alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~ 168 (594)
T TIGR01394 91 VLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWA 168 (594)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcc
Confidence 77776622 233578999999984211 00 0 1 46789999999974
No 199
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.21 E-value=2.2e-11 Score=80.00 Aligned_cols=72 Identities=11% Similarity=-0.063 Sum_probs=51.0
Q ss_pred EEEEEEeCCCcccccccCcccccCCceeeeehhhc------------------CCccEEecccccchhhhhc-------h
Q psy13093 39 INLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------------------GHPVRFPRGRKIRIMQMIG-------F 93 (111)
Q Consensus 39 ~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~gnk~dl~~~~~-------~ 93 (111)
..+.+|||+|+++|...+....+.+|+++.+.+.. ..++++++.||+|+..... .
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQI 162 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHH
Confidence 67899999999998776666677788765555421 1124788999999953111 1
Q ss_pred h--------ccCceEEcccccccCC
Q psy13093 94 R--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 94 ~--------~~~~~~e~SAk~~~n~ 110 (111)
. ....++.+||++|+|+
T Consensus 163 ~~~~~~~~~~~~~i~~vSA~~g~gi 187 (203)
T cd01888 163 KKFVKGTIAENAPIIPISAQLKYNI 187 (203)
T ss_pred HHHHhccccCCCcEEEEeCCCCCCH
Confidence 1 1456899999999985
No 200
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=6.3e-11 Score=86.82 Aligned_cols=107 Identities=15% Similarity=0.041 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEECCeeEEEEEEeCCCccc----ccccCcc---cccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYI-PTVFDNYSANVMVDGKPINLGLWDTAGQED----YDRLRPL---SYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~-~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~~~~~~~---~~~~a~~~~~~~~ 71 (111)
|||||||+++++..+.. .+|. +|.... .-.+.++ ...+.|||++|.-. ...+... ++..+++++.+.+
T Consensus 169 NAGKSTLln~Ls~akpkIadypfTTl~P~-lGvv~~~--~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD 245 (500)
T PRK12296 169 SAGKSSLISALSAAKPKIADYPFTTLVPN-LGVVQAG--DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVD 245 (500)
T ss_pred CCCHHHHHHHHhcCCccccccCcccccce-EEEEEEC--CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEEC
Confidence 69999999999875432 2222 222111 1122333 35799999999532 1112112 3456777665544
Q ss_pred hc-----------------------------------CCccEEecccccchhhhhchh--------c-cCceEEcccccc
Q psy13093 72 HA-----------------------------------GHPVRFPRGRKIRIMQMIGFR--------D-RLLWGSKQAREE 107 (111)
Q Consensus 72 ~~-----------------------------------~~~~~~~~gnk~dl~~~~~~~--------~-~~~~~e~SAk~~ 107 (111)
.. ...+.+++.||+|+....... . ++.++++||+++
T Consensus 246 ~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tg 325 (500)
T PRK12296 246 CATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASR 325 (500)
T ss_pred CcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 21 234689999999995432221 1 567899999999
Q ss_pred cCC
Q psy13093 108 KNE 110 (111)
Q Consensus 108 ~n~ 110 (111)
.|+
T Consensus 326 eGL 328 (500)
T PRK12296 326 EGL 328 (500)
T ss_pred CCH
Confidence 885
No 201
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.20 E-value=8.4e-11 Score=90.15 Aligned_cols=108 Identities=9% Similarity=-0.138 Sum_probs=72.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccC----------cccc--cCCceee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLR----------PLSY--PQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~----------~~~~--~~a~~~~ 67 (111)
|||||||++++.+.+.. ..+..|.... +...++.....+++||++|..++.... ..|+ ..+|+++
T Consensus 13 NvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI 90 (772)
T PRK09554 13 NSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLI 90 (772)
T ss_pred CCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEE
Confidence 79999999999876542 2233444442 333445566789999999998875432 2233 3788776
Q ss_pred eehhh--------------cCCccEEecccccchhhhhc-------hhc--cCceEEcccccccCC
Q psy13093 68 SFALH--------------AGHPVRFPRGRKIRIMQMIG-------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~~--------------~~~~~~~~~gnk~dl~~~~~-------~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+. -.+.+.+++.||+|+.+..+ +++ +++.+.+||++|+|+
T Consensus 91 ~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GI 156 (772)
T PRK09554 91 NVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGI 156 (772)
T ss_pred EEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCH
Confidence 66651 12356899999999954222 111 788999999999884
No 202
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.19 E-value=2.5e-11 Score=76.09 Aligned_cols=107 Identities=12% Similarity=-0.067 Sum_probs=67.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCc----------ccccccCcccccCC---cee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQ----------EDYDRLRPLSYPQT---WSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~----------~~~~~~~~~~~~~a---~~~ 66 (111)
|+|||||++.+.++.+.....++.+.... ..+..++ .+.+||++|. +.+..+...|++.. +++
T Consensus 9 g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (170)
T cd01876 9 NVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGV 85 (170)
T ss_pred CCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEE
Confidence 79999999999987777777777766543 2333333 8999999984 33445555555543 222
Q ss_pred eeehh----------------hcCCccEEecccccchhhh-------hch-------hccCceEEcccccccCC
Q psy13093 67 RSFAL----------------HAGHPVRFPRGRKIRIMQM-------IGF-------RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 67 ~~~~~----------------~~~~~~~~~~gnk~dl~~~-------~~~-------~~~~~~~e~SAk~~~n~ 110 (111)
+.+.+ ...+.+++++.||+|+... ... .....++.+||+++.+.
T Consensus 86 ~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 86 VLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI 159 (170)
T ss_pred EEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence 22211 1123457889999999310 011 11356789999999874
No 203
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.19 E-value=1.1e-11 Score=74.59 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=62.0
Q ss_pred CcchHHHHHHHHhCCCCCCCC-CceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhcCCccEE
Q psy13093 1 AVGKTCLLISYTTNAFPGEYI-PTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAGHPVRF 79 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~-~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 79 (111)
|||||+|+.||..+.|...+. ||++...........-..-+.+||..-.+.+..+|. . ++. ...-.+.+.+
T Consensus 10 gvGKt~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~~~------~-~i~-~~~k~dl~~~ 81 (124)
T smart00010 10 GVGKVGKSARFVQFPFDYVPTVFTIGIDVYDPTSYESFDVVLQCWRVDDRDSADNKNV------P-EVL-VGNKSDLPIL 81 (124)
T ss_pred ChhHHHHHHHHhcCCccccCceehhhhhhccccccCCCCEEEEEEEccCHHHHHHHhH------H-HHH-hcCCCCCcEE
Confidence 799999999999999977666 776622111111122233344588776555543321 1 111 1111344578
Q ss_pred ecccccchhhhhchhc--cCceEEcccccccCC
Q psy13093 80 PRGRKIRIMQMIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 80 ~~gnk~dl~~~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
+++||.|+.+...... ...|+++||++|.|+
T Consensus 82 ~~~nk~dl~~~~~~~~~~~~~~~~~s~~~~~~~ 114 (124)
T smart00010 82 VGGNRDVLEEERQVATEEGLEFAETSAKTPEEG 114 (124)
T ss_pred EEeechhhHhhCcCCHHHHHHHHHHhCCCcchh
Confidence 8999999954222222 667899999999986
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.15 E-value=2.4e-10 Score=82.65 Aligned_cols=77 Identities=10% Similarity=-0.009 Sum_probs=53.0
Q ss_pred ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhcC-------------------CccEEecccccchhh--hh-
Q psy13093 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAG-------------------HPVRFPRGRKIRIMQ--MI- 91 (111)
Q Consensus 34 ~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~gnk~dl~~--~~- 91 (111)
+....+.+.+|||+|+++|.......++.+|+++++.+... .+.++++.||+|+.. ..
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHH
Confidence 34556789999999999886544445678998766655322 134788999999942 10
Q ss_pred ------chhc----------cCceEEcccccccCC
Q psy13093 92 ------GFRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 92 ------~~~~----------~~~~~e~SAk~~~n~ 110 (111)
...+ .++++.+||++|.|+
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi 193 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNV 193 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCc
Confidence 0000 256899999999986
No 205
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=1.3e-10 Score=74.48 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=74.6
Q ss_pred CcchHHHHHHHHhCCC--------CCCC----CCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeee
Q psy13093 1 AVGKTCLLISYTTNAF--------PGEY----IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRS 68 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--------~~~~----~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~ 68 (111)
++|||+++.+.++..- ...+ ..|+..+|-+.. + .....+.+++|+||+||+.||..+.+++.+++.
T Consensus 20 ~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~-~-~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaiv 97 (187)
T COG2229 20 GAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE-L-DEDTGVHLFGTPGQERFKFMWEILSRGAVGAIV 97 (187)
T ss_pred ccchhhHHHHhhccccceeeccccccccccccceeEeecccceE-E-cCcceEEEecCCCcHHHHHHHHHHhCCcceEEE
Confidence 6899999999987652 1111 135555554321 2 234678999999999999999999999999877
Q ss_pred ehh----------------hcCC-ccEEecccccchhhhhch---------h-ccCceEEcccccccC
Q psy13093 69 FAL----------------HAGH-PVRFPRGRKIRIMQMIGF---------R-DRLLWGSKQAREEKN 109 (111)
Q Consensus 69 ~~~----------------~~~~-~~~~~~gnk~dl~~~~~~---------~-~~~~~~e~SAk~~~n 109 (111)
+.+ .... .+.++..||.||..+.+- . ...+-++++|.+++.
T Consensus 98 lVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~ 165 (187)
T COG2229 98 LVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEG 165 (187)
T ss_pred EEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchh
Confidence 776 1222 558899999999543222 2 156678888887754
No 206
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.11 E-value=6.4e-11 Score=79.71 Aligned_cols=89 Identities=16% Similarity=-0.073 Sum_probs=60.4
Q ss_pred CcchHHHHHHHHhCCC--------CC-----CCC---CceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCC
Q psy13093 1 AVGKTCLLISYTTNAF--------PG-----EYI---PTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--------~~-----~~~---~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a 63 (111)
|+|||||+.+++...- .. .+. ...|..+. ....+.....++.+|||+|+.+|...+..+++.+
T Consensus 9 ~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~a 88 (237)
T cd04168 9 DAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVL 88 (237)
T ss_pred CCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHh
Confidence 7999999999986311 00 000 11122221 2233445668899999999999988888999999
Q ss_pred ceeeeehh----------------hcCCccEEecccccchhh
Q psy13093 64 WSLRSFAL----------------HAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 64 ~~~~~~~~----------------~~~~~~~~~~gnk~dl~~ 89 (111)
|+++++.+ ...+.+.+++.||+|+..
T Consensus 89 D~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 89 DGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 98777665 122456789999999963
No 207
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.09 E-value=2.4e-10 Score=75.97 Aligned_cols=76 Identities=8% Similarity=-0.052 Sum_probs=53.4
Q ss_pred CeeEEEEEEeCCCcccccccCcccccCCceeeeehhhcC------------------------CccEEecccccchhhh-
Q psy13093 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAG------------------------HPVRFPRGRKIRIMQM- 90 (111)
Q Consensus 36 ~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~gnk~dl~~~- 90 (111)
....++.+|||+|+.+|...+-...+.+|+++++.+... .++++++.||+|+...
T Consensus 74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~ 153 (219)
T cd01883 74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVN 153 (219)
T ss_pred eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccccc
Confidence 456789999999998886655556677888777655332 2457789999999621
Q ss_pred ---------h-ch----hc------cCceEEcccccccCCC
Q psy13093 91 ---------I-GF----RD------RLLWGSKQAREEKNEK 111 (111)
Q Consensus 91 ---------~-~~----~~------~~~~~e~SAk~~~n~~ 111 (111)
+ .. .. +.+++.+||++|.|+.
T Consensus 154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 0 00 11 3568999999999963
No 208
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.08 E-value=2.1e-10 Score=78.48 Aligned_cols=57 Identities=14% Similarity=-0.027 Sum_probs=44.5
Q ss_pred EECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchhh
Q psy13093 33 MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 33 ~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~~ 89 (111)
.+....+++.+|||+|+.+|......+++.+|+++++.+. ..+.++++++||+|+..
T Consensus 65 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 65 QFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred EEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 4556678999999999999987677788999987776652 12456889999999854
No 209
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.08 E-value=1.3e-09 Score=74.93 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=38.1
Q ss_pred CcchHHHHHHHHhCCCCCC----------CCCceeeee-EEEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGE----------YIPTVFDNY-SANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~----------~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~ 49 (111)
|+|||||++++....+... ..+|+.... ...+..++..+++.||||+|-
T Consensus 14 g~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 14 GLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 7999999999998876443 456666554 345666788899999999993
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.00 E-value=4.8e-10 Score=80.72 Aligned_cols=73 Identities=10% Similarity=-0.100 Sum_probs=52.4
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehhhcC------------------CccEEecccccchhhhh-------c
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAG------------------HPVRFPRGRKIRIMQMI-------G 92 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~------------------~~~~~~~gnk~dl~~~~-------~ 92 (111)
...+.+||++|+++|...+-.....+|+++++.+... .+.++++.||+|+.... .
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHH
Confidence 4679999999999997766666777888766665321 23478889999994211 1
Q ss_pred hh--------ccCceEEcccccccCC
Q psy13093 93 FR--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 93 ~~--------~~~~~~e~SAk~~~n~ 110 (111)
.. .+++++.+||++|+|+
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi 184 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANI 184 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCCh
Confidence 11 1457899999999986
No 211
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.94 E-value=2e-09 Score=77.21 Aligned_cols=77 Identities=13% Similarity=-0.017 Sum_probs=48.7
Q ss_pred EECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-----------------hcCCccEEecccccchhhhh----
Q psy13093 33 MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-----------------HAGHPVRFPRGRKIRIMQMI---- 91 (111)
Q Consensus 33 ~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~gnk~dl~~~~---- 91 (111)
.++.....+.+|||+|+++|....-.....+|+++++.+ ...-+.++++.||+|+....
T Consensus 69 ~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~ 148 (394)
T TIGR00485 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLE 148 (394)
T ss_pred EEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHH
Confidence 344556788999999999985333333456687656554 12223355789999984211
Q ss_pred ----chhc----------cCceEEcccccccC
Q psy13093 92 ----GFRD----------RLLWGSKQAREEKN 109 (111)
Q Consensus 92 ----~~~~----------~~~~~e~SAk~~~n 109 (111)
...+ +++++.+||++|.|
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~ 180 (394)
T TIGR00485 149 LVEMEVRELLSEYDFPGDDTPIIRGSALKALE 180 (394)
T ss_pred HHHHHHHHHHHhcCCCccCccEEECccccccc
Confidence 1111 26789999998764
No 212
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.93 E-value=1.9e-09 Score=70.50 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=52.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceee-eeEE-EEEEC-CeeEEEEEEeCCCcccccccC-----cccccCCceeeeehh-
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSA-NVMVD-GKPINLGLWDTAGQEDYDRLR-----PLSYPQTWSLRSFAL- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~-~~~~-~i~~~-~~~~~l~iwD~~G~~~~~~~~-----~~~~~~a~~~~~~~~- 71 (111)
|||||||++.+....+.....++++. .... ...+. .....+.+||++|........ ...+.++|.++.+.+
T Consensus 11 g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~ 90 (197)
T cd04104 11 GAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST 90 (197)
T ss_pred CCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC
Confidence 79999999999987665444444442 1111 11111 112368999999986533222 223667887655533
Q ss_pred -------------hcCCccEEecccccch
Q psy13093 72 -------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl 87 (111)
.....++++++||+|+
T Consensus 91 ~~~~~d~~~~~~l~~~~~~~ilV~nK~D~ 119 (197)
T cd04104 91 RFSSNDVKLAKAIQCMGKKFYFVRTKVDR 119 (197)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 1113457999999999
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.93 E-value=1.5e-09 Score=78.35 Aligned_cols=72 Identities=11% Similarity=-0.063 Sum_probs=46.4
Q ss_pred EEEEEEeCCCcccccccCcccccCCceeeeehhhc------------------CCccEEecccccchhhhh-------ch
Q psy13093 39 INLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------------------GHPVRFPRGRKIRIMQMI-------GF 93 (111)
Q Consensus 39 ~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~gnk~dl~~~~-------~~ 93 (111)
..+.+|||+|+++|....-.....+|+++.+.+.. ..++++++.||+|+.... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i 164 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQI 164 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHH
Confidence 68899999999987542222233457665555422 123478889999984211 11
Q ss_pred h--------ccCceEEcccccccCC
Q psy13093 94 R--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 94 ~--------~~~~~~e~SAk~~~n~ 110 (111)
. .+.+++++||++|.|+
T Consensus 165 ~~~l~~~~~~~~~ii~vSA~~g~gI 189 (411)
T PRK04000 165 KEFVKGTVAENAPIIPVSALHKVNI 189 (411)
T ss_pred HHHhccccCCCCeEEEEECCCCcCH
Confidence 1 1367899999999985
No 214
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.91 E-value=3.1e-09 Score=70.98 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=43.8
Q ss_pred CeeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 36 ~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
++.+.+.+|||+|+++|......+++.+|+++++++. ..+.+.++++||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 4578999999999999999999999999997777651 1234589999999974
No 215
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.90 E-value=3.3e-09 Score=72.43 Aligned_cols=53 Identities=15% Similarity=0.017 Sum_probs=41.1
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccchhh
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~~ 89 (111)
..+.+.+|||+|..+|...+...++.+|+++.+.+ ...+.+.+++.||+|+..
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 45788999999999988778888899998766654 122345778999999853
No 216
>PRK13351 elongation factor G; Reviewed
Probab=98.89 E-value=1.6e-09 Score=82.48 Aligned_cols=85 Identities=18% Similarity=-0.049 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHhCC-------------CCC-------CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccc
Q psy13093 1 AVGKTCLLISYTTNA-------------FPG-------EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (111)
Q Consensus 1 gvGKssl~~~~~~~~-------------f~~-------~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~ 60 (111)
|+|||||+.+++... +.. .+.+|+...+. .+....+.+.+|||+|+.+|...+..++
T Consensus 18 ~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~---~~~~~~~~i~liDtPG~~df~~~~~~~l 94 (687)
T PRK13351 18 DAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAAT---SCDWDNHRINLIDTPGHIDFTGEVERSL 94 (687)
T ss_pred CCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceE---EEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence 699999999998531 111 12333333322 2333568899999999999999999999
Q ss_pred cCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 61 PQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 61 ~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
+.+|+++++.+. ..+.+.++++||+|+.
T Consensus 95 ~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 95 RVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV 138 (687)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC
Confidence 999987777651 2244688899999985
No 217
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.86 E-value=1.3e-08 Score=64.45 Aligned_cols=108 Identities=12% Similarity=-0.051 Sum_probs=65.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccc------cCcccc--cCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDR------LRPLSY--PQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~------~~~~~~--~~a~~~~~~~~ 71 (111)
+||||||++++++.+....-.|-.-.+.. ..+.+.+ ..+.+.|++|--.... ++..|. ..+|+++.+.+
T Consensus 10 NvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvD 87 (156)
T PF02421_consen 10 NVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVD 87 (156)
T ss_dssp TSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEE
T ss_pred CCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECC
Confidence 69999999999987642211222222322 3444444 6789999999643332 223333 47887777776
Q ss_pred --------------hcCCccEEecccccchhhhhchh-------c--cCceEEcccccccCC
Q psy13093 72 --------------HAGHPVRFPRGRKIRIMQMIGFR-------D--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------------~~~~~~~~~~gnk~dl~~~~~~~-------~--~~~~~e~SAk~~~n~ 110 (111)
.--+.+.+++.||+|+.+..+.. + +++.+.+||+++++.
T Consensus 88 a~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 88 ATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGI 149 (156)
T ss_dssp GGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCH
Confidence 22345699999999996533322 2 889999999999874
No 218
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.85 E-value=3.2e-09 Score=74.29 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=52.9
Q ss_pred CcchHHHHHHHHhCCCC------CCCCCceeeeeEEE----------------EEECC-eeEEEEEEeCCCc----cccc
Q psy13093 1 AVGKTCLLISYTTNAFP------GEYIPTVFDNYSAN----------------VMVDG-KPINLGLWDTAGQ----EDYD 53 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~------~~~~~t~~~~~~~~----------------i~~~~-~~~~l~iwD~~G~----~~~~ 53 (111)
+||||||+++++..++. ..+.|++|..+... .+.++ +.+.+++||++|+ ++++
T Consensus 8 nvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ga~~~~ 87 (318)
T cd01899 8 NAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPGAHEGK 87 (318)
T ss_pred CCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCCccchh
Confidence 69999999999988743 45578888765321 11233 4478999999998 6666
Q ss_pred ccCccc---ccCCceeeeehhhc
Q psy13093 54 RLRPLS---YPQTWSLRSFALHA 73 (111)
Q Consensus 54 ~~~~~~---~~~a~~~~~~~~~~ 73 (111)
.+.+.+ +|+||+++.+++..
T Consensus 88 glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 88 GLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred hHHHHHHHHHHHCCEEEEEEeCC
Confidence 666665 89999987777643
No 219
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.85 E-value=9.1e-09 Score=67.45 Aligned_cols=110 Identities=16% Similarity=0.003 Sum_probs=65.6
Q ss_pred CcchHHHHHHHHhCC--------CCCC---CCC---ceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTTNA--------FPGE---YIP---TVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~~--------f~~~---~~~---t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
++|||||+.+++... .... ..+ .-|.... ....+......+.+.||+|..+|..-....++.+|+
T Consensus 12 ~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~ 91 (195)
T cd01884 12 DHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDG 91 (195)
T ss_pred CCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCE
Confidence 689999999997531 0000 000 1111111 122233445677899999998886555556678888
Q ss_pred eeeehhh-----------------cCCccEEecccccchhhhh---c-----hhc----------cCceEEcccccccCC
Q psy13093 66 LRSFALH-----------------AGHPVRFPRGRKIRIMQMI---G-----FRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 66 ~~~~~~~-----------------~~~~~~~~~gnk~dl~~~~---~-----~~~----------~~~~~e~SAk~~~n~ 110 (111)
++++.+. ...+.++++.||+|+.... . ... +.++.-+||++|.|.
T Consensus 92 ~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 92 AILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 6666541 2223367889999983110 0 100 356889999999984
No 220
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.84 E-value=5.8e-09 Score=77.34 Aligned_cols=88 Identities=13% Similarity=-0.039 Sum_probs=60.0
Q ss_pred CcchHHHHHHHHh-CCCCCC-------------------CCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCccc
Q psy13093 1 AVGKTCLLISYTT-NAFPGE-------------------YIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59 (111)
Q Consensus 1 gvGKssl~~~~~~-~~f~~~-------------------~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~ 59 (111)
++|||||+.+++. ...... .....|..+. ....++...+.+.+|||+|+.+|......+
T Consensus 21 ~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~ 100 (527)
T TIGR00503 21 DAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRT 100 (527)
T ss_pred CCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHH
Confidence 6899999999863 211110 0111233332 234456667899999999999998766678
Q ss_pred ccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 60 YPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 60 ~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
++.+|+++++.+. ..+.+++++.||+|+.
T Consensus 101 l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 101 LTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 8999987777652 2345689999999984
No 221
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.84 E-value=9.6e-10 Score=71.33 Aligned_cols=75 Identities=12% Similarity=-0.038 Sum_probs=55.0
Q ss_pred CeeEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccchhh------hhch
Q psy13093 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIMQ------MIGF 93 (111)
Q Consensus 36 ~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~~------~~~~ 93 (111)
.....+.+.|++|+.+|........+.+|+++.+.+ ...+.+.+++.||+|+.+ ....
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~ 146 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEI 146 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHH
Confidence 567899999999999997777777889998766665 233344999999999942 0111
Q ss_pred h------------ccCceEEcccccccCC
Q psy13093 94 R------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 94 ~------------~~~~~~e~SAk~~~n~ 110 (111)
. ...+++.+||++|+|+
T Consensus 147 ~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 147 KEKLLKEYGENGEEIVPVIPISALTGDGI 175 (188)
T ss_dssp HHHHHHHTTSTTTSTEEEEEEBTTTTBTH
T ss_pred HHHhccccccCccccceEEEEecCCCCCH
Confidence 1 0246899999999985
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=98.83 E-value=1.1e-08 Score=73.58 Aligned_cols=110 Identities=15% Similarity=-0.003 Sum_probs=62.7
Q ss_pred CcchHHHHHHHHhC-------CCCC-CCCC------ceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTTN-------AFPG-EYIP------TVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~-------~f~~-~~~~------t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
++|||||+.+++.. .+.. .... .-|.... ....+......+.++||+|+++|......-...+|+
T Consensus 22 d~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~ 101 (396)
T PRK12735 22 DHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDG 101 (396)
T ss_pred CCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCE
Confidence 58999999999852 1100 0000 1111111 112233344567899999998885433445567887
Q ss_pred eeeehh-----------------hcCCccEEecccccchhhhh--------ch---h-------ccCceEEcccccccCC
Q psy13093 66 LRSFAL-----------------HAGHPVRFPRGRKIRIMQMI--------GF---R-------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 66 ~~~~~~-----------------~~~~~~~~~~gnk~dl~~~~--------~~---~-------~~~~~~e~SAk~~~n~ 110 (111)
++++.+ ...-+.++++.||+|+.... .. . .+.+++.+||++|+|.
T Consensus 102 ~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 102 AILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEG 181 (396)
T ss_pred EEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccC
Confidence 655554 12222355679999994210 11 0 1367899999999873
No 223
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.83 E-value=4.9e-09 Score=80.25 Aligned_cols=88 Identities=15% Similarity=0.017 Sum_probs=63.3
Q ss_pred CcchHHHHHHHHhC---------------CCCCC---CCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCccccc
Q psy13093 1 AVGKTCLLISYTTN---------------AFPGE---YIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61 (111)
Q Consensus 1 gvGKssl~~~~~~~---------------~f~~~---~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~ 61 (111)
++|||||+.+++.. +|... ...|+...+. .....++..+.+.+|||+|+.+|.......++
T Consensus 29 ~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~ 108 (720)
T TIGR00490 29 DHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMR 108 (720)
T ss_pred CCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHH
Confidence 68999999999752 33222 3345555442 33345677899999999999999877788899
Q ss_pred CCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 62 QTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 62 ~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
.+|+++++.+. ..+.+.+++.||+|..
T Consensus 109 ~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 109 AVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred hcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 99987666651 1223467999999985
No 224
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.82 E-value=3.7e-09 Score=78.33 Aligned_cols=89 Identities=16% Similarity=0.050 Sum_probs=60.0
Q ss_pred CcchHHHHHHHHh--CCCC---------------CCCC---CceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCccc
Q psy13093 1 AVGKTCLLISYTT--NAFP---------------GEYI---PTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59 (111)
Q Consensus 1 gvGKssl~~~~~~--~~f~---------------~~~~---~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~ 59 (111)
++|||||+.+++. +... ..+. ..-|..+. ....+....+.+.+|||+|+++|......+
T Consensus 20 daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~ 99 (526)
T PRK00741 20 DAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRT 99 (526)
T ss_pred CCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHH
Confidence 6899999999974 1100 0000 11122332 223345567889999999999998877778
Q ss_pred ccCCceeeeehhh----------------cCCccEEecccccchhh
Q psy13093 60 YPQTWSLRSFALH----------------AGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 60 ~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~~ 89 (111)
++.+|+++.+.+. ..+.+++++.||+|+..
T Consensus 100 l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 100 LTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred HHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 8999998777652 23556899999999853
No 225
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.80 E-value=1.5e-08 Score=72.64 Aligned_cols=109 Identities=14% Similarity=-0.003 Sum_probs=62.4
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccc----cCc---ccccCCceeeeehhh
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR----LRP---LSYPQTWSLRSFALH 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~----~~~---~~~~~a~~~~~~~~~ 72 (111)
|||||||++.++..+- ...|.-|.-....-.+..+ ....+.++|++|.-+-.. +.. .++..+++++.+.+.
T Consensus 169 NaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~ 247 (390)
T PRK12298 169 NAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDI 247 (390)
T ss_pred CCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEecc
Confidence 6999999999986543 1222222222211122232 234688999999743110 111 245677776555531
Q ss_pred -------------------------cCCccEEecccccchhhhh-------chhc--c--CceEEcccccccCC
Q psy13093 73 -------------------------AGHPVRFPRGRKIRIMQMI-------GFRD--R--LLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------------------~~~~~~~~~gnk~dl~~~~-------~~~~--~--~~~~e~SAk~~~n~ 110 (111)
+.+.+.+++.||+|+.... .+.+ . ...+.+||+++.|+
T Consensus 248 s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GI 321 (390)
T PRK12298 248 APIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGV 321 (390)
T ss_pred CcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCH
Confidence 1235678899999994211 1111 1 35789999999875
No 226
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.78 E-value=3.7e-08 Score=71.18 Aligned_cols=108 Identities=18% Similarity=0.088 Sum_probs=73.6
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccC--------cccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLR--------PLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~--------~~~~~~a~~~~~~~ 70 (111)
+||||||++.+++.+- .+...-|.-+.....+.++| +.+.+.||+|-.+..... ....++||.++.+.
T Consensus 227 NvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~ 304 (454)
T COG0486 227 NVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVL 304 (454)
T ss_pred CCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 6999999999997653 45555565665566666755 557889999976544332 24566788665555
Q ss_pred hhc---------------CCccEEecccccchhhhhchh-----ccCceEEcccccccCC
Q psy13093 71 LHA---------------GHPVRFPRGRKIRIMQMIGFR-----DRLLWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~~---------------~~~~~~~~gnk~dl~~~~~~~-----~~~~~~e~SAk~~~n~ 110 (111)
+.. .+.+++++.||.||....... .+.....+||++|++.
T Consensus 305 D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 305 DASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGL 364 (454)
T ss_pred eCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCH
Confidence 511 224579999999996533322 3556899999998753
No 227
>KOG1707|consensus
Probab=98.75 E-value=3.7e-09 Score=77.90 Aligned_cols=109 Identities=14% Similarity=-0.043 Sum_probs=70.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeeh--h-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFA--L------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~--~------- 71 (111)
|||||||+..++.++|.++..| ..........+....+-..|-|++..+.-+.....-+|.|+++-.++ +
T Consensus 19 G~GKtSLImSL~~eef~~~VP~-rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ 97 (625)
T KOG1707|consen 19 GVGKTSLIMSLLEEEFVDAVPR-RLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDR 97 (625)
T ss_pred CccHHHHHHHHHhhhccccccc-cCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhh
Confidence 8999999999999999877433 33222211222334556889999876666666667778888542222 1
Q ss_pred --------------hcCCccEEecccccchhhhhch-------------hccCceEEcccccccCC
Q psy13093 72 --------------HAGHPVRFPRGRKIRIMQMIGF-------------RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------------~~~~~~~~~~gnk~dl~~~~~~-------------~~~~~~~e~SAk~~~n~ 110 (111)
.--+.+++++|||+|....... ++-=.++||||++-.|+
T Consensus 98 ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 98 ISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV 163 (625)
T ss_pred hhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence 2245579999999999442222 11123589999987765
No 228
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.72 E-value=4e-08 Score=77.44 Aligned_cols=84 Identities=18% Similarity=0.051 Sum_probs=57.7
Q ss_pred cchHHHHHHHHhCCCCCC----CCCceeeeeEEEEEECC----------------eeEEEEEEeCCCcccccccCccccc
Q psy13093 2 VGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVDG----------------KPINLGLWDTAGQEDYDRLRPLSYP 61 (111)
Q Consensus 2 vGKssl~~~~~~~~f~~~----~~~t~~~~~~~~i~~~~----------------~~~~l~iwD~~G~~~~~~~~~~~~~ 61 (111)
|+||||+..+........ ....+|..+.. ++. +.-.+.+|||+|++.|..++...++
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~---~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~ 548 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIP---IDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGS 548 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEE---ecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcc
Confidence 689999999886654332 23334543321 110 0113899999999999999888899
Q ss_pred CCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 62 QTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 62 ~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
.+|+++++++. ..+.++++++||+|+.
T Consensus 549 ~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 549 LADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred cCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 99987666542 2234689999999994
No 229
>KOG0077|consensus
Probab=98.70 E-value=5e-09 Score=66.49 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=68.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
++|||+|++.+.+++.. ++.||.=-.- ..+.+ .+++++-+|.+|+..-+..|+.|+-.+++++.+++
T Consensus 30 NAGKTTLLHMLKdDrl~-qhvPTlHPTS-E~l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~e 105 (193)
T KOG0077|consen 30 NAGKTTLLHMLKDDRLG-QHVPTLHPTS-EELSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAE 105 (193)
T ss_pred CCchhhHHHHHcccccc-ccCCCcCCCh-HHhee--cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHH
Confidence 68999999999887653 4456543221 12223 46889999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhhhchhc
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFRD 95 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~~ 95 (111)
.....++++.|||+|++.+.+..+
T Consensus 106 s~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~ 141 (193)
T KOG0077|consen 106 SKKELDALLSDESLATVPFLILGNKIDIPYAASEDE 141 (193)
T ss_pred HHHHHHHHHhHHHHhcCcceeecccccCCCcccHHH
Confidence 345667899999999977665544
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.69 E-value=3.9e-08 Score=70.93 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=50.4
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehh-----------------hcCCccEEecccccchhhh---------
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-----------------HAGHPVRFPRGRKIRIMQM--------- 90 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~gnk~dl~~~--------- 90 (111)
...++.++||+|+++|......-+..+|+++++.+ ....+.++++.||+|+...
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHH
Confidence 44578899999999985433445678887666655 1233447889999998420
Q ss_pred hchh---c-----cCceEEcccccccCC
Q psy13093 91 IGFR---D-----RLLWGSKQAREEKNE 110 (111)
Q Consensus 91 ~~~~---~-----~~~~~e~SAk~~~n~ 110 (111)
..+. . +.+++.+||++|.|.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni 185 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNV 185 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCC
Confidence 0111 1 346899999999985
No 231
>PRK12736 elongation factor Tu; Reviewed
Probab=98.68 E-value=4.9e-08 Score=70.17 Aligned_cols=108 Identities=15% Similarity=0.013 Sum_probs=62.1
Q ss_pred CcchHHHHHHHHhCC-------CCC-------CCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTTNA-------FPG-------EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~~-------f~~-------~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
++|||||+.+++... +.. .....-|.... ....+......+.++||+|+++|....-.-...+|+
T Consensus 22 d~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~ 101 (394)
T PRK12736 22 DHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDG 101 (394)
T ss_pred CCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCE
Confidence 589999999997521 100 00001111111 122233445577899999999885433344467787
Q ss_pred eeeehh-----------------hcCCccEEecccccchhhh---hc-hh----c----------cCceEEccccccc
Q psy13093 66 LRSFAL-----------------HAGHPVRFPRGRKIRIMQM---IG-FR----D----------RLLWGSKQAREEK 108 (111)
Q Consensus 66 ~~~~~~-----------------~~~~~~~~~~gnk~dl~~~---~~-~~----~----------~~~~~e~SAk~~~ 108 (111)
++++.+ ....+.++++.||+|+... .. .. + +.+++.+||++|.
T Consensus 102 ~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 102 AILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred EEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 666655 1222336788999998421 11 11 0 2578999999985
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.68 E-value=8.3e-08 Score=70.02 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=54.8
Q ss_pred CCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhcC-----------------------C-ccEEecccccchhh-
Q psy13093 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAG-----------------------H-PVRFPRGRKIRIMQ- 89 (111)
Q Consensus 35 ~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~-~~~~~~gnk~dl~~- 89 (111)
......+.+.|++|+++|.......++.+|+.+++.+... . +.++++.||+|+..
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch
Confidence 4456789999999999998777788889998666655222 2 23678899999741
Q ss_pred -------------hh------chh-ccCceEEcccccccCC
Q psy13093 90 -------------MI------GFR-DRLLWGSKQAREEKNE 110 (111)
Q Consensus 90 -------------~~------~~~-~~~~~~e~SAk~~~n~ 110 (111)
.. ++. ++++|+.+||++|+|+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni 201 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM 201 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccc
Confidence 00 000 1367999999999996
No 233
>COG1159 Era GTPase [General function prediction only]
Probab=98.67 E-value=5.2e-08 Score=67.00 Aligned_cols=108 Identities=14% Similarity=0.003 Sum_probs=67.6
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccc--------ccCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD--------RLRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~--------~~~~~~~~~a~~~~~~~ 70 (111)
+||||||++++++.+. .+.-..|......-.++. ...++-+.||+|--+-+ ......+.++|.++++.
T Consensus 16 NvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~--~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvv 93 (298)
T COG1159 16 NVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT--DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVV 93 (298)
T ss_pred CCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc--CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEE
Confidence 6999999999998764 233333433333322222 26778899999954432 12335577889766665
Q ss_pred hhc--------------C--CccEEecccccchhhhhc----hhc----cCce---EEcccccccCC
Q psy13093 71 LHA--------------G--HPVRFPRGRKIRIMQMIG----FRD----RLLW---GSKQAREEKNE 110 (111)
Q Consensus 71 ~~~--------------~--~~~~~~~gnk~dl~~~~~----~~~----~~~~---~e~SAk~~~n~ 110 (111)
+.. . +.+.+++.||+|...... ..+ .++| +.+||+.|.|+
T Consensus 94 d~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 94 DADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred eccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 511 1 347999999999733222 111 4444 77899999986
No 234
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.64 E-value=3.8e-08 Score=70.97 Aligned_cols=107 Identities=16% Similarity=0.056 Sum_probs=68.7
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccc------cc---CcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD------RL---RPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~------~~---~~~~~~~a~~~~~~ 69 (111)
+||||||.+|++..+. .+.+.-+.-+.......+.+.. +.+-||+|-+.-. .+ ...-+..||+++++
T Consensus 13 NVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfv 90 (444)
T COG1160 13 NVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFV 90 (444)
T ss_pred CCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEE
Confidence 6999999999997653 3333333334333444454444 8899999977433 11 22445688987777
Q ss_pred hh----------------hcCCccEEecccccchhhhhchhc---cC---ceEEcccccccC
Q psy13093 70 AL----------------HAGHPVRFPRGRKIRIMQMIGFRD---RL---LWGSKQAREEKN 109 (111)
Q Consensus 70 ~~----------------~~~~~~~~~~gnk~dl~~~~~~~~---~~---~~~e~SAk~~~n 109 (111)
.+ .-.+.+++++.||+|-.......- .+ ..+-+||-.|.+
T Consensus 91 VD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 91 VDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred EeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccC
Confidence 76 333467999999999964333222 22 347789988765
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=98.63 E-value=8.7e-08 Score=70.42 Aligned_cols=110 Identities=18% Similarity=0.023 Sum_probs=63.6
Q ss_pred CcchHHHHHHHHhC------CCCCCC--------CCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTTN------AFPGEY--------IPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~------~f~~~~--------~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
++|||||+.+++.. .....+ ...-|.... ....+......+.++|++|+++|-.-.-.-...+|+
T Consensus 91 d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ 170 (478)
T PLN03126 91 DHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDG 170 (478)
T ss_pred CCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCE
Confidence 58999999999852 111111 111121111 111233345578899999999985433444557787
Q ss_pred eeeehh-----------------hcCCccEEecccccchhhhh----ch-------------h-ccCceEEcccccccCC
Q psy13093 66 LRSFAL-----------------HAGHPVRFPRGRKIRIMQMI----GF-------------R-DRLLWGSKQAREEKNE 110 (111)
Q Consensus 66 ~~~~~~-----------------~~~~~~~~~~gnk~dl~~~~----~~-------------~-~~~~~~e~SAk~~~n~ 110 (111)
.+++.+ ...-+.++++.||+|+.... .. . .+.++.-+||.+|.|.
T Consensus 171 ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 171 AILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 656554 22223367899999984210 00 1 1456788999998753
No 236
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.62 E-value=5e-08 Score=66.94 Aligned_cols=53 Identities=15% Similarity=-0.017 Sum_probs=42.0
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchhh
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~~ 89 (111)
...++.+|||+|..+|...+..+++.+|+++++.+. ..+.+.+++.||+|+..
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 457889999999999988888899999987776652 22345788999999853
No 237
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.8e-07 Score=68.51 Aligned_cols=106 Identities=17% Similarity=0.056 Sum_probs=75.3
Q ss_pred cchHHHHHHHHhCCCCCC----CCCceeeeeEEEEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeeeehh-----
Q psy13093 2 VGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----- 71 (111)
Q Consensus 2 vGKssl~~~~~~~~f~~~----~~~t~~~~~~~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----- 71 (111)
-|||||+-.......-.. +...+|.. .+.++ +..-.+.+.||+|++-|..|+..-..=+|..+++.+
T Consensus 16 HGKTtLLD~IR~t~Va~~EaGGITQhIGA~---~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv 92 (509)
T COG0532 16 HGKTTLLDKIRKTNVAAGEAGGITQHIGAY---QVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV 92 (509)
T ss_pred CCccchhhhHhcCccccccCCceeeEeeeE---EEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc
Confidence 399999999887655332 33334433 33333 234578899999999999999988888887666654
Q ss_pred -----------hcCCccEEecccccchhhhhchhc----------------cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIGFRD----------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~~~~----------------~~~~~e~SAk~~~n~ 110 (111)
..-+.|+++..||+|....-..+. +..+..+||++|+|.
T Consensus 93 ~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 93 MPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred chhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 455667999999999953211111 567899999999984
No 238
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.59 E-value=1.4e-07 Score=63.10 Aligned_cols=50 Identities=18% Similarity=0.017 Sum_probs=32.1
Q ss_pred eEEEEEEeCCCcccccccCcccc--cCCceeeeehh----------------hcCCccEEecccccch
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSY--PQTWSLRSFAL----------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~--~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl 87 (111)
...+.+.|++|+++|..-.-..+ +.+|.++.+.+ ...+.+.+++.||+|+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 35688999999999843222222 35676545443 1123347899999998
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.58 E-value=1.4e-07 Score=69.27 Aligned_cols=75 Identities=15% Similarity=0.035 Sum_probs=49.7
Q ss_pred CeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-----------------cCCccEEecccccchhhh--------
Q psy13093 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-----------------AGHPVRFPRGRKIRIMQM-------- 90 (111)
Q Consensus 36 ~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~~gnk~dl~~~-------- 90 (111)
.....+.++||+|+++|......-.+.+|+++++.+. ...+.++++.||+|+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i 183 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERI 183 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHH
Confidence 3456788999999998853333335888886666541 222357889999998520
Q ss_pred h-chh---------ccCceEEcccccccCC
Q psy13093 91 I-GFR---------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 91 ~-~~~---------~~~~~~e~SAk~~~n~ 110 (111)
. .+. ...+++.+||++|+|+
T Consensus 184 ~~~l~~~~~~~~~~~~~~iipvSA~~g~ni 213 (474)
T PRK05124 184 REDYLTFAEQLPGNLDIRFVPLSALEGDNV 213 (474)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEeecCCCc
Confidence 0 010 1356789999999996
No 240
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.54 E-value=1.8e-08 Score=65.26 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=53.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEE-CCeeEEEEEEeCCCcccccc-cCcc--cccCCceeeeehh-----
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPINLGLWDTAGQEDYDR-LRPL--SYPQTWSLRSFAL----- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~-~~~~~~l~iwD~~G~~~~~~-~~~~--~~~~a~~~~~~~~----- 71 (111)
|+|||+|..++..+++.+.+.+. ..+.. ..+ +...-.+.+-|++|+++.+. +... +...+.+++++.|
T Consensus 13 ~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~ 89 (181)
T PF09439_consen 13 GSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ 89 (181)
T ss_dssp TSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH
T ss_pred CCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch
Confidence 78999999999999776554333 22221 112 23455789999999999875 3333 4677888888776
Q ss_pred -------------------hcCCccEEecccccchh
Q psy13093 72 -------------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 72 -------------------~~~~~~~~~~gnk~dl~ 88 (111)
....++++++.||.|+.
T Consensus 90 ~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 90 KELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred hhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 22445699999999994
No 241
>KOG0462|consensus
Probab=98.53 E-value=3e-07 Score=67.84 Aligned_cols=76 Identities=18% Similarity=0.041 Sum_probs=56.9
Q ss_pred CCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc----------------CCccEEecccccchhhhhc------
Q psy13093 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA----------------GHPVRFPRGRKIRIMQMIG------ 92 (111)
Q Consensus 35 ~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~~~------ 92 (111)
+++++.|++-||+|+-+|+.=....+.-++|++++++.. .+-.++.+-||+|+.-+..
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q 200 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQ 200 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHH
Confidence 478899999999999999887777888889888877722 2234889999999942111
Q ss_pred hhc-----cCceEEcccccccCC
Q psy13093 93 FRD-----RLLWGSKQAREEKNE 110 (111)
Q Consensus 93 ~~~-----~~~~~e~SAk~~~n~ 110 (111)
..+ ......+|||+|+|+
T Consensus 201 ~~~lF~~~~~~~i~vSAK~G~~v 223 (650)
T KOG0462|consen 201 LFELFDIPPAEVIYVSAKTGLNV 223 (650)
T ss_pred HHHHhcCCccceEEEEeccCccH
Confidence 111 334578999999996
No 242
>CHL00071 tufA elongation factor Tu
Probab=98.52 E-value=2.9e-07 Score=66.50 Aligned_cols=109 Identities=19% Similarity=0.052 Sum_probs=64.2
Q ss_pred CcchHHHHHHHHhCCC----------------CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCc
Q psy13093 1 AVGKTCLLISYTTNAF----------------PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTW 64 (111)
Q Consensus 1 gvGKssl~~~~~~~~f----------------~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~ 64 (111)
++|||||+.+++...- ..+..+.+-.+. ....+......+.+-||+|+.+|..........+|
T Consensus 22 d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~-~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D 100 (409)
T CHL00071 22 DHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT-AHVEYETENRHYAHVDCPGHADYVKNMITGAAQMD 100 (409)
T ss_pred CCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc-cEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCC
Confidence 5899999999986311 001111111111 11123334456778999999887544445566788
Q ss_pred eeeeehh-----------------hcCCccEEecccccchhhhhch--------hc----------cCceEEcccccccC
Q psy13093 65 SLRSFAL-----------------HAGHPVRFPRGRKIRIMQMIGF--------RD----------RLLWGSKQAREEKN 109 (111)
Q Consensus 65 ~~~~~~~-----------------~~~~~~~~~~gnk~dl~~~~~~--------~~----------~~~~~e~SAk~~~n 109 (111)
+++++.+ ...-+.++++.||+|+...... .. ..++..+||.+|+|
T Consensus 101 ~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 101 GAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 7666654 2222336789999999431111 00 26789999999987
Q ss_pred C
Q psy13093 110 E 110 (111)
Q Consensus 110 ~ 110 (111)
.
T Consensus 181 ~ 181 (409)
T CHL00071 181 A 181 (409)
T ss_pred c
Confidence 4
No 243
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.52 E-value=1.5e-07 Score=71.83 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=41.9
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
....+.+|||+|+.+|...+..+++.+|+++++.+. ..+.+.+++.||+|+.
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT 140 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 457899999999999988888899999987777762 1234578899999985
No 244
>PRK00049 elongation factor Tu; Reviewed
Probab=98.51 E-value=5.3e-07 Score=64.90 Aligned_cols=107 Identities=18% Similarity=0.026 Sum_probs=63.0
Q ss_pred CcchHHHHHHHHhCCC----------------CCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCC
Q psy13093 1 AVGKTCLLISYTTNAF----------------PGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (111)
Q Consensus 1 gvGKssl~~~~~~~~f----------------~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a 63 (111)
++|||||+.+++...- .++..+ |.... ....+......+.+.||+|+.+|..........+
T Consensus 22 d~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--g~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~a 99 (396)
T PRK00049 22 DHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKAR--GITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQM 99 (396)
T ss_pred CCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhc--CeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccC
Confidence 5899999999986210 000011 11111 1222333445677899999988855444556788
Q ss_pred ceeeeehh-----------------hcCCccEEecccccchhhhhc----hh--------------ccCceEEccccccc
Q psy13093 64 WSLRSFAL-----------------HAGHPVRFPRGRKIRIMQMIG----FR--------------DRLLWGSKQAREEK 108 (111)
Q Consensus 64 ~~~~~~~~-----------------~~~~~~~~~~gnk~dl~~~~~----~~--------------~~~~~~e~SAk~~~ 108 (111)
|+++++.+ ....+.++++.||+|+..... .. .+.++..+||++|.
T Consensus 100 D~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred CEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeeccccc
Confidence 98766665 122222456889999852100 11 13677899999987
Q ss_pred C
Q psy13093 109 N 109 (111)
Q Consensus 109 n 109 (111)
|
T Consensus 180 ~ 180 (396)
T PRK00049 180 E 180 (396)
T ss_pred C
Confidence 5
No 245
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.49 E-value=1.5e-07 Score=65.96 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=53.0
Q ss_pred CCCCCCCceeeeeEEEEE--------ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh---------------
Q psy13093 16 FPGEYIPTVFDNYSANVM--------VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH--------------- 72 (111)
Q Consensus 16 f~~~~~~t~~~~~~~~i~--------~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~--------------- 72 (111)
+...|.||..+-++..+. +.-..+.+.+||++||...+..|..||.++++++.+++.
T Consensus 130 ~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nr 209 (317)
T cd00066 130 SDPDYIPTEQDILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNR 209 (317)
T ss_pred hCCCCCCChhHheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchH
Confidence 345666666554432111 223468899999999999999999999999998776551
Q ss_pred ----------------cCCccEEecccccchh
Q psy13093 73 ----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 73 ----------------~~~~~~~~~gnk~dl~ 88 (111)
..+.++++..||.|+-
T Consensus 210 l~esl~~f~~i~~~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 210 MQESLNLFDSICNSRWFANTSIILFLNKKDLF 241 (317)
T ss_pred HHHHHHHHHHHHhCccccCCCEEEEccChHHH
Confidence 2345799999999984
No 246
>KOG1145|consensus
Probab=98.46 E-value=3.9e-07 Score=67.35 Aligned_cols=104 Identities=15% Similarity=0.046 Sum_probs=71.6
Q ss_pred chHHHHHHHHhCCCCCC----CCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 3 GKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 3 GKssl~~~~~~~~f~~~----~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||+-.|...+.-.. ....||.. .++++ ..-++.+.||+|+.-|..|+..--+-+|.+++++-
T Consensus 165 GKTTLLD~lRks~VAA~E~GGITQhIGAF---~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmp 240 (683)
T KOG1145|consen 165 GKTTLLDALRKSSVAAGEAGGITQHIGAF---TVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMP 240 (683)
T ss_pred ChhhHHHHHhhCceehhhcCCccceeceE---EEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccH
Confidence 99999999987654222 22333432 33454 34678999999999999999887777775444432
Q ss_pred ---------hcCCccEEecccccchhhhh-------------chhc---cCceEEcccccccCC
Q psy13093 72 ---------HAGHPVRFPRGRKIRIMQMI-------------GFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~~~~~~~~~~gnk~dl~~~~-------------~~~~---~~~~~e~SAk~~~n~ 110 (111)
..-+.++++.-||+|.+.+- ...+ +.....+||++|+|.
T Consensus 241 QT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 241 QTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred hHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 33345689999999985311 1111 677899999999995
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.46 E-value=3.7e-07 Score=69.15 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=48.7
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhh-----------------cCCccEEecccccchhh--h-------
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-----------------AGHPVRFPRGRKIRIMQ--M------- 90 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~~gnk~dl~~--~------- 90 (111)
....+.++||+|+++|..........+|+++++.+. ...+.++++.||+|+.. .
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~ 181 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIV 181 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHH
Confidence 345678999999998854333456778876555441 22345788999999842 1
Q ss_pred hchh---c-----cCceEEcccccccCC
Q psy13093 91 IGFR---D-----RLLWGSKQAREEKNE 110 (111)
Q Consensus 91 ~~~~---~-----~~~~~e~SAk~~~n~ 110 (111)
.... . +.+++.+||++|.|+
T Consensus 182 ~~i~~~~~~~~~~~~~iipiSA~~g~ni 209 (632)
T PRK05506 182 ADYRAFAAKLGLHDVTFIPISALKGDNV 209 (632)
T ss_pred HHHHHHHHHcCCCCccEEEEecccCCCc
Confidence 0111 1 245789999999986
No 248
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.43 E-value=3.2e-07 Score=61.68 Aligned_cols=85 Identities=21% Similarity=0.156 Sum_probs=50.2
Q ss_pred CcchHHHHHHHHhCCCCCC---CCCceeeeeEEEEEECCeeEEEEEEeCCCccccccc-----CcccccCCceeeeehh-
Q psy13093 1 AVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL-----RPLSYPQTWSLRSFAL- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~---~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~-----~~~~~~~a~~~~~~~~- 71 (111)
|+||||+......+--+.+ ..||+..+... + -....+.++|||++||..+-.. +...++++.+++.+.+
T Consensus 9 ~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~-v-~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~ 86 (232)
T PF04670_consen 9 RSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSH-V-RFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDA 86 (232)
T ss_dssp TSSHHHHHHHHHS---GGGGGG-----SEEEEE-E-ECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEET
T ss_pred CCChhhHHHHHHcCCCchhccccCCcCCceEEE-E-ecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEc
Confidence 6899999776654422221 22444433221 1 1245679999999999877443 3566889998877776
Q ss_pred ---------------------hcCCccEEecccccch
Q psy13093 72 ---------------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 72 ---------------------~~~~~~~~~~gnk~dl 87 (111)
..++..+.+.-.|+|+
T Consensus 87 qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~ 123 (232)
T PF04670_consen 87 QSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDL 123 (232)
T ss_dssp T-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc
Confidence 3455557788899998
No 249
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.41 E-value=6.1e-07 Score=63.51 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-----------------------------
Q psy13093 21 IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------------------- 71 (111)
Q Consensus 21 ~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------------------- 71 (111)
.||+|.... .+.+ ..+.+.+||.+||...+..|..||.++++++.+++
T Consensus 169 ~~T~Gi~~~-~f~~--~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 169 VPTTGIQET-AFIV--KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred CCccceEEE-EEEE--CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 455555432 2223 45778999999999999999999999999877655
Q ss_pred --hcCCccEEecccccchhh
Q psy13093 72 --HAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 72 --~~~~~~~~~~gnk~dl~~ 89 (111)
...+.++++..||.|+.+
T Consensus 246 ~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 246 SRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred CccccCCcEEEEEecHHhHH
Confidence 224456899999999953
No 250
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.38 E-value=9e-07 Score=59.95 Aligned_cols=61 Identities=8% Similarity=-0.101 Sum_probs=45.2
Q ss_pred ccccccCcccccCCceeeeehhh------------------cCCccEEecccccchhh--hhc--hh-----ccCceEEc
Q psy13093 50 EDYDRLRPLSYPQTWSLRSFALH------------------AGHPVRFPRGRKIRIMQ--MIG--FR-----DRLLWGSK 102 (111)
Q Consensus 50 ~~~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~~gnk~dl~~--~~~--~~-----~~~~~~e~ 102 (111)
++|+.+.+.+++++|.++.+.+. ..+.+.++++||+||.. .+. .. .++.++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~ 103 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMT 103 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 78999999999999986665541 13456899999999942 111 11 16788999
Q ss_pred ccccccCC
Q psy13093 103 QAREEKNE 110 (111)
Q Consensus 103 SAk~~~n~ 110 (111)
||++|.|+
T Consensus 104 SAktg~gi 111 (245)
T TIGR00157 104 SSKNQDGL 111 (245)
T ss_pred ecCCchhH
Confidence 99999885
No 251
>PRK12740 elongation factor G; Reviewed
Probab=98.35 E-value=4.7e-07 Score=68.98 Aligned_cols=52 Identities=15% Similarity=-0.013 Sum_probs=41.2
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccchh
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
..+.+.+|||+|+.+|...+..+++.+|+++.+.+ ...+.+.+++.||+|+.
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA 125 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 46789999999999988778888999998766665 12234577899999985
No 252
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.33 E-value=2.9e-06 Score=61.46 Aligned_cols=108 Identities=14% Similarity=0.021 Sum_probs=65.0
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCc-----------ccccCCceee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP-----------LSYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~-----------~~~~~a~~~~ 67 (111)
+||||||+++++..+- .....-|.-+.....++.+++ ++.+.||+|-.+=..+.. .-...++.++
T Consensus 188 NvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvl 265 (444)
T COG1160 188 NVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVL 265 (444)
T ss_pred CCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEE
Confidence 6999999999997652 223334444444455555555 467889999654322222 2234566555
Q ss_pred eehh----------------hcCCccEEecccccchhhh--hchhc-------------cCceEEcccccccCC
Q psy13093 68 SFAL----------------HAGHPVRFPRGRKIRIMQM--IGFRD-------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~----------------~~~~~~~~~~gnk~dl~~~--~~~~~-------------~~~~~e~SAk~~~n~ 110 (111)
++.+ .-.....+++-||.|+.+. ....+ -++.+.+||++|.++
T Consensus 266 lviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i 339 (444)
T COG1160 266 LVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGL 339 (444)
T ss_pred EEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCCh
Confidence 5544 2233458889999998442 11111 334588999999874
No 253
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.31 E-value=2.7e-06 Score=62.22 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=51.1
Q ss_pred ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc------------------------CCccEEecccccchhh
Q psy13093 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------------------------GHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 34 ~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~gnk~dl~~ 89 (111)
+......+.|.|++|+++|..-...-...+|+.+++.+.. .-+.++++-||+|...
T Consensus 80 ~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 80 FETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKT 159 (446)
T ss_pred EccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 3455678999999999999655455566788765554422 1233678999999421
Q ss_pred --------------h------hchh-ccCceEEcccccccCC
Q psy13093 90 --------------M------IGFR-DRLLWGSKQAREEKNE 110 (111)
Q Consensus 90 --------------~------~~~~-~~~~~~e~SAk~~~n~ 110 (111)
. .++. ++.+++.+||.+|+|+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni 201 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNM 201 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCc
Confidence 0 0111 1467899999999986
No 254
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=2.9e-07 Score=67.09 Aligned_cols=76 Identities=18% Similarity=0.059 Sum_probs=51.1
Q ss_pred CCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------------hcCCc-cEEecccccchhhh------hc
Q psy13093 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL---------------HAGHP-VRFPRGRKIRIMQM------IG 92 (111)
Q Consensus 35 ~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~---------------~~~~~-~~~~~gnk~dl~~~------~~ 92 (111)
+|+.+.|++-||+|+-+|.-=....+.-+.|.+++++ .+.+. .++.+-||+||+-+ ..
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~e 151 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQE 151 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHH
Confidence 5688999999999999986544444444555444444 33333 48999999999431 11
Q ss_pred hhc--cCc---eEEcccccccCC
Q psy13093 93 FRD--RLL---WGSKQAREEKNE 110 (111)
Q Consensus 93 ~~~--~~~---~~e~SAk~~~n~ 110 (111)
..+ +++ -..+|||+|.|+
T Consensus 152 Ie~~iGid~~dav~~SAKtG~gI 174 (603)
T COG0481 152 IEDIIGIDASDAVLVSAKTGIGI 174 (603)
T ss_pred HHHHhCCCcchheeEecccCCCH
Confidence 112 333 478999999886
No 255
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.25 E-value=1.6e-06 Score=54.19 Aligned_cols=96 Identities=16% Similarity=0.011 Sum_probs=55.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccc----c-cccCcccccCCceeeeehh----
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED----Y-DRLRPLSYPQTWSLRSFAL---- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~-~~~~~~~~~~a~~~~~~~~---- 71 (111)
|+|||||++++..... .|.-|....|.. .+-||+|.-- | +.+. ..-.+|+.+..+.+
T Consensus 11 g~GKTTL~q~L~~~~~--~~~KTq~i~~~~-----------~~IDTPGEyiE~~~~y~aLi-~ta~dad~V~ll~dat~~ 76 (143)
T PF10662_consen 11 GSGKTTLAQALNGEEI--RYKKTQAIEYYD-----------NTIDTPGEYIENPRFYHALI-VTAQDADVVLLLQDATEP 76 (143)
T ss_pred CCCHHHHHHHHcCCCC--CcCccceeEecc-----------cEEECChhheeCHHHHHHHH-HHHhhCCEEEEEecCCCC
Confidence 7999999999887554 333443344421 2348887421 1 1111 12236776655555
Q ss_pred ---------hcCCccEEecccccchh---hhhchhc------cC-ceEEcccccccCC
Q psy13093 72 ---------HAGHPVRFPRGRKIRIM---QMIGFRD------RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~~~~~~~~~~gnk~dl~---~~~~~~~------~~-~~~e~SAk~~~n~ 110 (111)
..-..+++=+.+|+|+. ..++.+. ++ .-|++||.+|+++
T Consensus 77 ~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 77 RSVFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred CccCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 22234577888999997 2222222 22 2499999999875
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.24 E-value=5.9e-06 Score=49.39 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=37.6
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccc----------cccCcccccCCceeee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY----------DRLRPLSYPQTWSLRS 68 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~----------~~~~~~~~~~a~~~~~ 68 (111)
|||||||++.++.... .....++........+.+++..+ .++||+|-..- ...... ++.+|.++.
T Consensus 9 ~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~ 85 (116)
T PF01926_consen 9 NVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIY 85 (116)
T ss_dssp TSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEE
T ss_pred CCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEE
Confidence 7999999999997532 22222222222223334555544 69999996432 122222 367776655
Q ss_pred ehh
Q psy13093 69 FAL 71 (111)
Q Consensus 69 ~~~ 71 (111)
+.+
T Consensus 86 vv~ 88 (116)
T PF01926_consen 86 VVD 88 (116)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 257
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.22 E-value=1.4e-06 Score=62.83 Aligned_cols=73 Identities=25% Similarity=0.218 Sum_probs=49.5
Q ss_pred CcchHHHHHHHHhCCCCC-CC-----CCceeeeeEE-EE---------------EECC-eeEEEEEEeCCCc----cccc
Q psy13093 1 AVGKTCLLISYTTNAFPG-EY-----IPTVFDNYSA-NV---------------MVDG-KPINLGLWDTAGQ----EDYD 53 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~-----~~t~~~~~~~-~i---------------~~~~-~~~~l~iwD~~G~----~~~~ 53 (111)
+||||||+++++..++.. +| .|++|..+.. .+ ..++ ....+++||++|. .+..
T Consensus 11 nvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g~ 90 (396)
T PRK09602 11 NVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAHEGR 90 (396)
T ss_pred CCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCccchh
Confidence 699999999999877642 33 4666654421 10 1222 3478999999994 4455
Q ss_pred ccCccc---ccCCceeeeehhhc
Q psy13093 54 RLRPLS---YPQTWSLRSFALHA 73 (111)
Q Consensus 54 ~~~~~~---~~~a~~~~~~~~~~ 73 (111)
.+.+.+ ++++|+++.+.+..
T Consensus 91 glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 91 GLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hHHHHHHHHHHHCCEEEEEEeCC
Confidence 566666 88999887777754
No 258
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.09 E-value=9.7e-06 Score=50.93 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=31.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEE-EEECCeeEEEEEEeCCC
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPINLGLWDTAG 48 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~-i~~~~~~~~l~iwD~~G 48 (111)
||||||+++++.... ...+.|+.|...... +..++ .+.+|||+|
T Consensus 111 ~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 111 NVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 699999999998644 455677777654322 22222 689999998
No 259
>PRK12739 elongation factor G; Reviewed
Probab=98.09 E-value=3e-06 Score=64.96 Aligned_cols=52 Identities=15% Similarity=-0.026 Sum_probs=41.3
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
....+.++||+|+.+|...+...++.+|+++++.+. ..+.+.+++.||+|+.
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI 138 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 456789999999999888888888999987777762 2234578999999995
No 260
>PLN03127 Elongation factor Tu; Provisional
Probab=98.04 E-value=2.1e-05 Score=57.59 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=35.0
Q ss_pred ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-----------------cCCccEEecccccchh
Q psy13093 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 34 ~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~~gnk~dl~ 88 (111)
+......+.+.||+|..+|......-...+|+++++.+. ..-+.++++.||+|+.
T Consensus 119 ~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 119 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred EcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 334455778999999988743332334468876666552 2222256789999984
No 261
>KOG1489|consensus
Probab=98.01 E-value=2.6e-05 Score=54.49 Aligned_cols=103 Identities=16% Similarity=0.043 Sum_probs=59.9
Q ss_pred CcchHHHHHHHHhCC-------CCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccc----cCccccc---CCcee
Q psy13093 1 AVGKTCLLISYTTNA-------FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR----LRPLSYP---QTWSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~-------f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~----~~~~~~~---~a~~~ 66 (111)
++|||||+.-++..+ |. +..|++|.. ..++- ..+.+-|.+|--+--. |--.|+| .+..+
T Consensus 206 NAGKSTLL~als~AKpkVa~YaFT-TL~P~iG~v-----~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l 278 (366)
T KOG1489|consen 206 NAGKSTLLNALSRAKPKVAHYAFT-TLRPHIGTV-----NYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGL 278 (366)
T ss_pred CCcHHHHHHHhhccCCccccccee-eecccccee-----ecccc-ceeEeccCccccccccccCcccHHHHHHHHhhceE
Confidence 589999999988653 21 234555522 12221 2278888887433211 1112222 33333
Q ss_pred eeehh-------------------------hcCCccEEecccccchhhhhch-----hccCc---eEEcccccccCC
Q psy13093 67 RSFAL-------------------------HAGHPVRFPRGRKIRIMQMIGF-----RDRLL---WGSKQAREEKNE 110 (111)
Q Consensus 67 ~~~~~-------------------------~~~~~~~~~~gnk~dl~~~~~~-----~~~~~---~~e~SAk~~~n~ 110 (111)
.++.| .+.+.+.++++||+|+.++... .+.+. -+.+||+.+++.
T Consensus 279 ~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 279 LFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGL 355 (366)
T ss_pred EEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccch
Confidence 33333 5556679999999999543322 23444 799999999875
No 262
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.01 E-value=1.4e-05 Score=49.57 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=29.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~ 49 (111)
|||||||++++....+.. ...+.|... ...+.+++ .+.||||+|-
T Consensus 93 ~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 93 NVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred CCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 799999999999877642 222233322 23444444 5799999984
No 263
>KOG0705|consensus
Probab=98.00 E-value=3.6e-06 Score=62.45 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=68.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
++|||+|++||+.+.|..... +.|..|.+.+.++++...+.|.|.+|... ..|...+|++++++.
T Consensus 40 ~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~ 113 (749)
T KOG0705|consen 40 QSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQA 113 (749)
T ss_pred cCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHH
Confidence 479999999999999987754 45778888888999999999999998433 334444554333322
Q ss_pred ------------hcCCccEEecccccch----------hhhhchhc---cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRI----------MQMIGFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl----------~~~~~~~~---~~~~~e~SAk~~~n~ 110 (111)
.....+.++++.+--+ .++..... .|.||+++|-+|-|+
T Consensus 114 v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 114 VQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred HHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 1122223444444333 11111111 788999999999886
No 264
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.00 E-value=3.4e-06 Score=57.73 Aligned_cols=63 Identities=25% Similarity=0.252 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE--EEEEECCeeEEEEEEeCCCccc-------ccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPINLGLWDTAGQED-------YDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~--~~i~~~~~~~~l~iwD~~G~~~-------~~~~~~~~~~~a~~ 65 (111)
|+||||+++.+..+...+-..--+|.+-. ...+.++ -.+.+||++|-++ ++.+...+...+|.
T Consensus 49 G~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DL 120 (296)
T COG3596 49 GAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDL 120 (296)
T ss_pred CCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHhhhccE
Confidence 89999999999976543211111111111 1122333 5689999999766 66666666777773
No 265
>KOG0090|consensus
Probab=97.95 E-value=4.2e-06 Score=55.37 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=55.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCccccc---CCceeeeehh------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP---QTWSLRSFAL------ 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~---~a~~~~~~~~------ 71 (111)
++|||+|..++..+.+...+ +++..+-. ...+. .-.+.+-|.+|+.+-+.-...|++ .+-+++++++
T Consensus 48 dSGKT~LF~qL~~gs~~~Tv-tSiepn~a-~~r~g--s~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k 123 (238)
T KOG0090|consen 48 DSGKTSLFTQLITGSHRGTV-TSIEPNEA-TYRLG--SENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLK 123 (238)
T ss_pred CCCceeeeeehhcCCccCee-eeecccee-eEeec--CcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccch
Confidence 58999999999999665443 22222211 11122 223789999999998765555665 5666666665
Q ss_pred ------------------hcCCccEEecccccch
Q psy13093 72 ------------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 72 ------------------~~~~~~~~~~gnk~dl 87 (111)
....++++++-||.|+
T Consensus 124 ~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl 157 (238)
T KOG0090|consen 124 NVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL 157 (238)
T ss_pred hhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence 1334558999999999
No 266
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.91 E-value=2.7e-05 Score=55.22 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=47.8
Q ss_pred CeeEEEEEEeCCCcccc-cccCcccccCCceeeeehh-----------------hcCCccEEecccccchhh--------
Q psy13093 36 GKPINLGLWDTAGQEDY-DRLRPLSYPQTWSLRSFAL-----------------HAGHPVRFPRGRKIRIMQ-------- 89 (111)
Q Consensus 36 ~~~~~l~iwD~~G~~~~-~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~gnk~dl~~-------- 89 (111)
...-++-|-||+|++.| ++|.. --..||..+++.+ -+.-.-+++..||+||..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaT-GASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMAT-GASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhc-ccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHH
Confidence 34567889999999998 45543 2334565555554 222233788999999931
Q ss_pred ----hhchhc-----cCceEEcccccccCC
Q psy13093 90 ----MIGFRD-----RLLWGSKQAREEKNE 110 (111)
Q Consensus 90 ----~~~~~~-----~~~~~e~SAk~~~n~ 110 (111)
-..++. ...|.-.||..|+|+
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 112222 346788999999997
No 267
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.90 E-value=4.3e-05 Score=57.81 Aligned_cols=105 Identities=14% Similarity=0.005 Sum_probs=68.5
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccc------cCccccc--CCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDR------LRPLSYP--QTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~------~~~~~~~--~a~~~~~~~ 70 (111)
|||||||.++++.... ..++. |.... +.-.+..+...+++-|.+|--.... ..+.|+. .+|.++.+.
T Consensus 13 NvGKTtlFN~LTG~~q~VgNwp---GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVv 89 (653)
T COG0370 13 NVGKTTLFNALTGANQKVGNWP---GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVV 89 (653)
T ss_pred CccHHHHHHHHhccCceecCCC---CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEc
Confidence 6999999999997543 44442 44442 3333444455589999999543322 2223332 457788887
Q ss_pred h---------------hcCCccEEecccccchhhhhchhc---------cCceEEcccccccC
Q psy13093 71 L---------------HAGHPVRFPRGRKIRIMQMIGFRD---------RLLWGSKQAREEKN 109 (111)
Q Consensus 71 ~---------------~~~~~~~~~~gnk~dl~~~~~~~~---------~~~~~e~SAk~~~n 109 (111)
| .... +.+++-|++|..+..+..- +++-..+||++|++
T Consensus 90 DAtnLeRnLyltlQLlE~g~-p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 90 DATNLERNLYLTLQLLELGI-PMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred ccchHHHHHHHHHHHHHcCC-CeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCC
Confidence 7 3333 4889999999965333222 88999999999987
No 268
>KOG1423|consensus
Probab=97.85 E-value=4.3e-05 Score=53.35 Aligned_cols=85 Identities=14% Similarity=0.025 Sum_probs=49.3
Q ss_pred CcchHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccC------------cccccCCcee
Q psy13093 1 AVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLR------------PLSYPQTWSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~--~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~------------~~~~~~a~~~ 66 (111)
+||||+|.+++++.+...- -..|.-....-. +-.....+-++||+|--.-...+ ......||.+
T Consensus 82 NvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi--~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~v 159 (379)
T KOG1423|consen 82 NVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI--ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCV 159 (379)
T ss_pred CcchhhhhhHhhCCccccccccccceeeeeeEE--EecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEE
Confidence 6999999999998764211 111111111111 22356778899999943211111 1234567877
Q ss_pred eeehhhc-----------------CCccEEecccccch
Q psy13093 67 RSFALHA-----------------GHPVRFPRGRKIRI 87 (111)
Q Consensus 67 ~~~~~~~-----------------~~~~~~~~gnk~dl 87 (111)
+.+.|.. ...+.+++-||+|.
T Consensus 160 vVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~ 197 (379)
T KOG1423|consen 160 VVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDK 197 (379)
T ss_pred EEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhc
Confidence 6666622 23357788899988
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=7.3e-05 Score=53.84 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=50.3
Q ss_pred CCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh------------------------cCCccEEecccccchhh-
Q psy13093 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------------------------AGHPVRFPRGRKIRIMQ- 89 (111)
Q Consensus 35 ~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~~gnk~dl~~- 89 (111)
....+.+.|.|++|+.+|-.=.-.-..+||+-+++.+. ..-.-.+++-||+|+..
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccccc
Confidence 34557899999999888853333445567765444442 22223778889999932
Q ss_pred -----------------hhchhc-cCceEEcccccccCCC
Q psy13093 90 -----------------MIGFRD-RLLWGSKQAREEKNEK 111 (111)
Q Consensus 90 -----------------~~~~~~-~~~~~e~SAk~~~n~~ 111 (111)
..++.. +..|.-+||-.|.|++
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~ 200 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLT 200 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccc
Confidence 112222 5779999999999974
No 270
>COG2262 HflX GTPases [General function prediction only]
Probab=97.78 E-value=9.4e-05 Score=53.19 Aligned_cols=109 Identities=14% Similarity=-0.032 Sum_probs=64.4
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccc--cccCcc------cccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY--DRLRPL------SYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~--~~~~~~------~~~~a~~~~~~~~ 71 (111)
++|||||++++...... .+...+.-+.-.+.+.+.+ .-.+.+=||-|-=+- ..+... -...||.++.+.|
T Consensus 202 NAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVD 280 (411)
T COG2262 202 NAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVD 280 (411)
T ss_pred cccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEee
Confidence 68999999999865432 2222222233334555554 345667799874221 111111 1346787666665
Q ss_pred --------------------hcCCccEEecccccchhhhhc---hhc-cC-ceEEcccccccCC
Q psy13093 72 --------------------HAGHPVRFPRGRKIRIMQMIG---FRD-RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 --------------------~~~~~~~~~~gnk~dl~~~~~---~~~-~~-~~~e~SAk~~~n~ 110 (111)
.+.+.+.+++-||+|+..... ..+ .. ...-+||++|+|.
T Consensus 281 aSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl 344 (411)
T COG2262 281 ASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGL 344 (411)
T ss_pred cCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCH
Confidence 456678999999999743222 111 22 3688999999874
No 271
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.77 E-value=5.2e-05 Score=48.49 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=29.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~ 49 (111)
|||||||++++....+. ...+..+..+. ..+.++ ..+.+|||+|-
T Consensus 125 ~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 125 NVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 69999999999987763 22333333332 233343 45789999983
No 272
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.76 E-value=2.5e-05 Score=57.38 Aligned_cols=72 Identities=11% Similarity=-0.086 Sum_probs=46.6
Q ss_pred EEEEEEeCCCcccccccCcccccCCceeeeehhhc------------------CCccEEecccccchhhh-------hch
Q psy13093 39 INLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------------------GHPVRFPRGRKIRIMQM-------IGF 93 (111)
Q Consensus 39 ~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~gnk~dl~~~-------~~~ 93 (111)
..+.+.|++|+++|-.-.-.-...+|+++++.+.. .-+.++++-||+|+... ...
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei 196 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEI 196 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHH
Confidence 36789999999988433333445677655554421 12346789999998420 011
Q ss_pred h--------ccCceEEcccccccCC
Q psy13093 94 R--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 94 ~--------~~~~~~e~SAk~~~n~ 110 (111)
. .+.+++.+||++|.|.
T Consensus 197 ~~~l~~~~~~~~~iipVSA~~G~nI 221 (460)
T PTZ00327 197 RNFVKGTIADNAPIIPISAQLKYNI 221 (460)
T ss_pred HHHHHhhccCCCeEEEeeCCCCCCH
Confidence 1 2567899999999985
No 273
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.72 E-value=4.1e-05 Score=50.23 Aligned_cols=85 Identities=18% Similarity=0.033 Sum_probs=51.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCC----------cccccccCcccccCC-c--ee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAG----------QEDYDRLRPLSYPQT-W--SL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G----------~~~~~~~~~~~~~~a-~--~~ 66 (111)
+||||||++.+++.+-.....-|.|..-. -.+.+++. +.+-|.+| ++++..+...|++.- + ++
T Consensus 34 NVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~v 110 (200)
T COG0218 34 NVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGV 110 (200)
T ss_pred cccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEE
Confidence 69999999999986632333334444322 12234443 77889998 455556666666643 2 22
Q ss_pred eeehh----------------hcCCccEEecccccchh
Q psy13093 67 RSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 67 ~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
+.+.| .-.+.+.+++.||+|..
T Consensus 111 vlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi 148 (200)
T COG0218 111 VLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKL 148 (200)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 23332 33445688999999994
No 274
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.70 E-value=0.00012 Score=49.90 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=29.7
Q ss_pred CcchHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccc
Q psy13093 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~--~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 52 (111)
|||||||++.+...... ..+.++...........+ ...+.+|||+|-...
T Consensus 41 GvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~ 92 (249)
T cd01853 41 GVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLES 92 (249)
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcc
Confidence 89999999999986532 122222211111112223 467899999997654
No 275
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.64 E-value=0.00052 Score=48.31 Aligned_cols=34 Identities=12% Similarity=-0.079 Sum_probs=23.8
Q ss_pred cEEecccccchhh---hhchhccCceEEcccccccCC
Q psy13093 77 VRFPRGRKIRIMQ---MIGFRDRLLWGSKQAREEKNE 110 (111)
Q Consensus 77 ~~~~~gnk~dl~~---~~~~~~~~~~~e~SAk~~~n~ 110 (111)
+.+.+.||+|+.- .....+....+-+||+.++|.
T Consensus 241 p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nl 277 (365)
T COG1163 241 PALYVVNKIDLPGLEELERLARKPNSVPISAKKGINL 277 (365)
T ss_pred eeEEEEecccccCHHHHHHHHhccceEEEecccCCCH
Confidence 4678889999954 222333557788999999874
No 276
>PRK00007 elongation factor G; Reviewed
Probab=97.64 E-value=6e-05 Score=57.97 Aligned_cols=52 Identities=15% Similarity=-0.013 Sum_probs=37.9
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
....+.+.||+|..+|..-....++.+|+++++.+. ..+.+.+++.||+|+.
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 356788999999988865455566788887666652 2233577999999995
No 277
>PTZ00416 elongation factor 2; Provisional
Probab=97.59 E-value=9.7e-05 Score=57.92 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=39.7
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
...+.+.||+|..+|..-....++.+|+.+++.+. ..+.+.+++.||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 57789999999999876666777889987777661 1234678889999996
No 278
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.59 E-value=0.00023 Score=52.35 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=68.0
Q ss_pred chHHHHHHHHh--CCCCCCCCCc------------eeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceee
Q psy13093 3 GKTCLLISYTT--NAFPGEYIPT------------VFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLR 67 (111)
Q Consensus 3 GKssl~~~~~~--~~f~~~~~~t------------~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~ 67 (111)
|||+|+..++. +.|.+...-. -|... .|+-.++.+.+.++|.||+|+.+|.-=...-++=+|+++
T Consensus 17 GKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvl 96 (603)
T COG1217 17 GKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVL 96 (603)
T ss_pred CcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEE
Confidence 99999999975 3444321110 12222 233334566789999999999999877777777788887
Q ss_pred eehhhcCCc----------------cEEecccccchhhhhchh----------------c--cCceEEccccccc
Q psy13093 68 SFALHAGHP----------------VRFPRGRKIRIMQMIGFR----------------D--RLLWGSKQAREEK 108 (111)
Q Consensus 68 ~~~~~~~~~----------------~~~~~gnk~dl~~~~~~~----------------~--~~~~~e~SAk~~~ 108 (111)
++++....+ .-+++.||+|-..+.... + +++..-.||+.|+
T Consensus 97 LlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~ 171 (603)
T COG1217 97 LLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGT 171 (603)
T ss_pred EEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCce
Confidence 877732222 246788999984321111 1 5556778998875
No 279
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.52 E-value=0.00027 Score=49.55 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=29.5
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeee-eEEEEEECCeeEEEEEEeCCCcccc
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDY 52 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~-~~~~i~~~~~~~~l~iwD~~G~~~~ 52 (111)
||||||++++++.... ...+.++ +.. ....... ....+.++||+|..+.
T Consensus 48 GVGKSSliNsIlG~~v~~vs~f~s~-t~~~~~~~~~~--~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 48 GVGKSSTVNSIIGERIATVSAFQSE-GLRPMMVSRTR--AGFTLNIIDTPGLIEG 99 (313)
T ss_pred CCCHHHHHHHHhCCCcccccCCCCc-ceeEEEEEEEE--CCeEEEEEECCCCCch
Confidence 8999999999997642 2222211 111 1111122 3568999999997754
No 280
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.48 E-value=0.00059 Score=48.28 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=23.8
Q ss_pred hcCCccEEecccccchhhhhchh----c----c----CceEEcccccccCC
Q psy13093 72 HAGHPVRFPRGRKIRIMQMIGFR----D----R----LLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~~~~~~~~~~gnk~dl~~~~~~~----~----~----~~~~e~SAk~~~n~ 110 (111)
.+.+.+.+++.||+|+....+.. . . ..++ +||.+++++
T Consensus 272 ~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~-ISa~t~~g~ 321 (369)
T COG0536 272 KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL-ISALTREGL 321 (369)
T ss_pred HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee-eehhcccCH
Confidence 66677899999999963221111 1 1 1223 999988764
No 281
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.48 E-value=0.00012 Score=57.51 Aligned_cols=52 Identities=12% Similarity=-0.019 Sum_probs=40.2
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
..+.+.+.||+|+.+|..-...-++.+|+.+++.+. ..+.+.+++.||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 367889999999999976666677889987676662 2234578999999996
No 282
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.46 E-value=0.00018 Score=49.65 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=47.2
Q ss_pred CcchHHHHHHHHhCCCCC-CCCC-ceeeeeEEEEEECCe---------------eEEEEEEeCCCcccc----cccCcc-
Q psy13093 1 AVGKTCLLISYTTNAFPG-EYIP-TVFDNYSANVMVDGK---------------PINLGLWDTAGQEDY----DRLRPL- 58 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~~~-t~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~~~----~~~~~~- 58 (111)
+||||||.+.++...... +|.- |+... .-.+.+.+. ...+++.|++|--+- ..+...
T Consensus 8 N~GKSTLfn~Lt~~~~~~~n~pftTi~p~-~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~f 86 (274)
T cd01900 8 NVGKSTLFNALTKAGAEAANYPFCTIEPN-VGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKF 86 (274)
T ss_pred CCcHHHHHHHHhCCCCccccccccchhce-eeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHH
Confidence 699999999999865422 2221 11111 112222222 235899999995421 112222
Q ss_pred --cccCCceeeeehhhcCCccEEecccccch
Q psy13093 59 --SYPQTWSLRSFALHAGHPVRFPRGRKIRI 87 (111)
Q Consensus 59 --~~~~a~~~~~~~~~~~~~~~~~~gnk~dl 87 (111)
.++.+|+++.+.+...++.+...-+..|-
T Consensus 87 L~~i~~~D~li~VV~~f~d~~~~~~~~~~dp 117 (274)
T cd01900 87 LSHIREVDAIAHVVRCFEDDDITHVEGSVDP 117 (274)
T ss_pred HHHHHhCCEEEEEEeCcCCCCccCCCCCCCH
Confidence 35679988888876655444433344444
No 283
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.43 E-value=0.00025 Score=54.96 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=40.8
Q ss_pred CCeeEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccchh
Q psy13093 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 35 ~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
++....+.+.||+|..+|.......++.+|+++++++ ...+.+.+++.||+|..
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 4457889999999999998777778889998766665 11122467889999974
No 284
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.42 E-value=0.00018 Score=50.48 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=29.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEE---CCeeEEEEEEeCCCcc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV---DGKPINLGLWDTAGQE 50 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~---~~~~~~l~iwD~~G~~ 50 (111)
+||||||+...+..+-.-... .| +|.+.+ ......+|+-||+|--
T Consensus 178 NVGKSSlv~~lT~AkpEvA~Y-----PFTTK~i~vGhfe~~~~R~QvIDTPGlL 226 (346)
T COG1084 178 NVGKSSLVRKLTTAKPEVAPY-----PFTTKGIHVGHFERGYLRIQVIDTPGLL 226 (346)
T ss_pred CCcHHHHHHHHhcCCCccCCC-----CccccceeEeeeecCCceEEEecCCccc
Confidence 699999999998765422111 23 244444 2345689999999953
No 285
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.28 E-value=0.00088 Score=44.82 Aligned_cols=81 Identities=17% Similarity=0.073 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|+|||+|++.+....-........|. + .+ ......++.+.||+|.- ..+. ...+.+|.++++.+.
T Consensus 49 ~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~ 121 (225)
T cd01882 49 GVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET 121 (225)
T ss_pred CCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH
Confidence 68999999888754211111111111 1 11 12245667899999853 2222 124667876555541
Q ss_pred ---------cCCccEEecccccchh
Q psy13093 73 ---------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 73 ---------~~~~~~~~~gnk~dl~ 88 (111)
...+.++.+.||+|+.
T Consensus 122 ~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 122 FEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred HHHHHHHHHcCCCeEEEEEeccccC
Confidence 1123355699999993
No 286
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.22 E-value=0.0017 Score=45.05 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=29.5
Q ss_pred CcchHHHHHHHHhCCCCCCC----------CCceeeee-EEEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEY----------IPTVFDNY-SANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~----------~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~ 49 (111)
|+|||||++-++........ .++..... ...+.-++..+.|.|+||+|-
T Consensus 14 G~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 14 GLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp TSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred CCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 79999999999986543331 12222222 123334678899999999984
No 287
>KOG3886|consensus
Probab=97.16 E-value=0.00014 Score=49.03 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=52.2
Q ss_pred CcchHHHHHHHH-hC-CC-CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccc-----cccCcccccCCceeeeehh-
Q psy13093 1 AVGKTCLLISYT-TN-AF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-----DRLRPLSYPQTWSLRSFAL- 71 (111)
Q Consensus 1 gvGKssl~~~~~-~~-~f-~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~-----~~~~~~~~~~a~~~~~~~~- 71 (111)
|+||||+=--+. +- .+ ....-+|+..+... +-. -.++-|.+||++||+.| ..-...-+++.++++.+.+
T Consensus 14 GsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh-~Rf-lGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDv 91 (295)
T KOG3886|consen 14 GSGKSSMRSIIFANYIARDTRRLGATIDVEHSH-VRF-LGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDV 91 (295)
T ss_pred CCCccccchhhhhhhhhhhhhccCCcceeeehh-hhh-hhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeec
Confidence 789999833222 11 11 12223444444321 111 13467899999999965 2345677889998777665
Q ss_pred ---------------------hcCCccEEecccccchh
Q psy13093 72 ---------------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 72 ---------------------~~~~~~~~~~gnk~dl~ 88 (111)
..|+..++..--|.|+.
T Consensus 92 es~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 92 ESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred cchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 44555588888899983
No 288
>PTZ00258 GTP-binding protein; Provisional
Probab=97.16 E-value=0.0013 Score=47.55 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCe---------------eEEEEEEeCCCccccc----ccCc---
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQEDYD----RLRP--- 57 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~~~~----~~~~--- 57 (111)
+||||||++.+....-. .+|.-|.-....-.+.+++. ...+++.|++|--+-. .+-.
T Consensus 31 NvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL 110 (390)
T PTZ00258 31 NVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFL 110 (390)
T ss_pred CCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHH
Confidence 69999999999765432 22222111111111222221 3458999999954211 1222
Q ss_pred ccccCCceeeeehhhcCCccEEecccccch
Q psy13093 58 LSYPQTWSLRSFALHAGHPVRFPRGRKIRI 87 (111)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~gnk~dl 87 (111)
..++.+|+++.+.+...++.+..+-...|-
T Consensus 111 ~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp 140 (390)
T PTZ00258 111 SHIRAVDGIYHVVRAFEDEDITHVEGEIDP 140 (390)
T ss_pred HHHHHCCEEEEEEeCCCCCCccccCCCCCH
Confidence 235689988888886655544443334443
No 289
>KOG0458|consensus
Probab=97.10 E-value=0.00093 Score=50.06 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=51.8
Q ss_pred EEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh------------------------hcCCccEEecccccc
Q psy13093 31 NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------------------------HAGHPVRFPRGRKIR 86 (111)
Q Consensus 31 ~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~~~~~gnk~d 86 (111)
...++.....+.|.|.+|+..|-.=.-.-...||.-+++++ .+.-.-.++..||+|
T Consensus 247 ~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD 326 (603)
T KOG0458|consen 247 TTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMD 326 (603)
T ss_pred eEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccc
Confidence 33445667789999999988874322223334555444443 344334778889999
Q ss_pred hhh-------------------hhchhc-cCceEEcccccccCC
Q psy13093 87 IMQ-------------------MIGFRD-RLLWGSKQAREEKNE 110 (111)
Q Consensus 87 l~~-------------------~~~~~~-~~~~~e~SAk~~~n~ 110 (111)
+.. ..++.+ ++.|.-||+-+|+|+
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 931 233333 678899999999996
No 290
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.08 E-value=0.00036 Score=50.07 Aligned_cols=87 Identities=11% Similarity=-0.041 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeee-e--EEEEEECCeeEEEEEEeCCCcccccccCccccc-----CCceeeeehh-
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-Y--SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP-----QTWSLRSFAL- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~-~--~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~-----~a~~~~~~~~- 71 (111)
|+|||||++-+.+-...++....+|.. - ...-......-++.+||.+|-..-..-...|+. .-|.++++..
T Consensus 45 GsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~ 124 (376)
T PF05049_consen 45 GSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE 124 (376)
T ss_dssp TSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS
T ss_pred CCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC
Confidence 799999999997532222222222331 1 111111122236899999986543333333333 3454444443
Q ss_pred -------------hcCCccEEecccccch
Q psy13093 72 -------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl 87 (111)
...+.+.+.|-+|+|.
T Consensus 125 rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 125 RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 3334457788888887
No 291
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.03 E-value=0.00074 Score=43.76 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.3
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||++.+....
T Consensus 137 nvGKStliN~l~~~~ 151 (190)
T cd01855 137 NVGKSTLINALLKKD 151 (190)
T ss_pred CCCHHHHHHHHHHhc
Confidence 799999999999754
No 292
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.03 E-value=0.0023 Score=40.25 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=24.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCC
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAG 48 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G 48 (111)
|||||||++.+....... ..++.|..-. ..+.++. .+.+.||+|
T Consensus 112 nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 112 NVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred CCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 799999999998754321 1222222211 1112221 367899998
No 293
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.99 E-value=0.0019 Score=44.48 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=27.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~ 49 (111)
|||||||++++........ .+..|.... ..+.++. .+.++||+|-
T Consensus 128 nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 128 NVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 7999999999997653221 222232221 2233322 4689999997
No 294
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.95 E-value=0.0003 Score=45.56 Aligned_cols=36 Identities=14% Similarity=-0.023 Sum_probs=24.3
Q ss_pred CccEEecccccchhh-h------hchh-----c--cC---ceEEcccccccCC
Q psy13093 75 HPVRFPRGRKIRIMQ-M------IGFR-----D--RL---LWGSKQAREEKNE 110 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~-~------~~~~-----~--~~---~~~e~SAk~~~n~ 110 (111)
+.+.++++||+|+.. . .... . ++ .++.+||++|+|+
T Consensus 61 ~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi 113 (190)
T cd01855 61 NNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGV 113 (190)
T ss_pred CCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCH
Confidence 456889999999842 1 1111 1 22 5789999999885
No 295
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.94 E-value=0.0038 Score=44.78 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=46.2
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCe---------------eEEEEEEeCCCcccc----cccCcc--
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQEDY----DRLRPL-- 58 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~~~----~~~~~~-- 58 (111)
+||||||.+.++...- ..+|.-|.-....-.+.+++. ...+++.|++|--+- ..+...
T Consensus 12 NvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL 91 (364)
T PRK09601 12 NVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFL 91 (364)
T ss_pred CCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHH
Confidence 6999999999987652 122221111111111122221 235899999995431 112222
Q ss_pred -cccCCceeeeehhhcCCccEEecccccch
Q psy13093 59 -SYPQTWSLRSFALHAGHPVRFPRGRKIRI 87 (111)
Q Consensus 59 -~~~~a~~~~~~~~~~~~~~~~~~gnk~dl 87 (111)
.++.+|+++.+.+...++.+..+-+..|-
T Consensus 92 ~~i~~aD~li~VVd~f~d~~~~~~~~~~dP 121 (364)
T PRK09601 92 ANIREVDAIVHVVRCFEDDNITHVEGKVDP 121 (364)
T ss_pred HHHHhCCEEEEEEeCCccCCCCCCCCCCCH
Confidence 35789988888876655444433333343
No 296
>KOG1191|consensus
Probab=96.92 E-value=0.0043 Score=45.92 Aligned_cols=49 Identities=33% Similarity=0.373 Sum_probs=33.3
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccc
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED 51 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~ 51 (111)
|||||||++.+...+- .....-|.-+.....++++| +.+.+-||+|-.+
T Consensus 278 NvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 278 NVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIRE 328 (531)
T ss_pred CCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEecccccc
Confidence 6999999999998753 23333444444555555554 5577889999654
No 297
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.87 E-value=0.0036 Score=43.40 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=27.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQE 50 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~ 50 (111)
|||||||++.+...+.... .++.|.... ..+.++. .+.++||+|--
T Consensus 131 nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 131 NVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 7999999999997654211 222233221 2223332 47899999973
No 298
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.87 E-value=0.0005 Score=49.14 Aligned_cols=63 Identities=13% Similarity=0.013 Sum_probs=44.4
Q ss_pred CcccccccCcccccCCceeeeehh--------------hcCCccEEecccccchhh-h------hch----hc--cC---
Q psy13093 48 GQEDYDRLRPLSYPQTWSLRSFAL--------------HAGHPVRFPRGRKIRIMQ-M------IGF----RD--RL--- 97 (111)
Q Consensus 48 G~~~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~gnk~dl~~-~------~~~----~~--~~--- 97 (111)
.+++|..+.+.+++.++.++.+.+ ...+.++++++||+|+.. . ... .. ++
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~ 128 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPV 128 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 467888899999998887666655 223456889999999942 1 111 11 33
Q ss_pred ceEEcccccccCC
Q psy13093 98 LWGSKQAREEKNE 110 (111)
Q Consensus 98 ~~~e~SAk~~~n~ 110 (111)
.++.+||++|+|+
T Consensus 129 ~i~~vSAk~g~gv 141 (360)
T TIGR03597 129 DIILVSAKKGNGI 141 (360)
T ss_pred cEEEecCCCCCCH
Confidence 4789999999986
No 299
>KOG0468|consensus
Probab=96.86 E-value=0.0023 Score=49.09 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=59.4
Q ss_pred CcchHHHHHHHHhCCCCCC---------CCCce------eeeeE---EEEEE---CCeeEEEEEEeCCCcccccccCccc
Q psy13093 1 AVGKTCLLISYTTNAFPGE---------YIPTV------FDNYS---ANVMV---DGKPINLGLWDTAGQEDYDRLRPLS 59 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~---------~~~t~------~~~~~---~~i~~---~~~~~~l~iwD~~G~~~~~~~~~~~ 59 (111)
+.|||+|+.-+.....++- |..+. |.... .++.+ .++.+.++|.||+|+-.|..=....
T Consensus 138 hhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~ 217 (971)
T KOG0468|consen 138 HHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTAS 217 (971)
T ss_pred ccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHH
Confidence 3699999988876543222 11111 22221 11212 4778999999999999998877788
Q ss_pred ccCCceeeeehh----------------hcCCccEEecccccchh
Q psy13093 60 YPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 60 ~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
++-+|+++++.+ .-.+.++.+|.||+|..
T Consensus 218 l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 218 LRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred hhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 889998777766 22334588999999983
No 300
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.81 E-value=0.0032 Score=40.55 Aligned_cols=44 Identities=27% Similarity=0.224 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCC
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAG 48 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G 48 (111)
|||||||++++...+-. ...+..|..-. ..+.++ -.+.+.||+|
T Consensus 127 nvGKSslin~l~~~~~~-~~~~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 127 NVGKSSLINSLKRSRAC-NVGATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred CCCHHHHHHHHhCcccc-eecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence 69999999999975431 11222232221 222232 2478999998
No 301
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.80 E-value=0.0023 Score=45.13 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=28.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~ 49 (111)
+||||||+++++...-. ...+.-|..-. ..+.++.. +.++||+|-
T Consensus 142 NVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 142 NVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred CCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 69999999999986651 12222244322 23333333 889999994
No 302
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.75 E-value=0.0028 Score=41.27 Aligned_cols=49 Identities=18% Similarity=0.109 Sum_probs=29.4
Q ss_pred CcchHHHHHHHHhCC-CCCCC---CCceeeeeEEEEEECCeeEEEEEEeCCCcccc
Q psy13093 1 AVGKTCLLISYTTNA-FPGEY---IPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (111)
Q Consensus 1 gvGKssl~~~~~~~~-f~~~~---~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 52 (111)
||||||+++.++..+ |.... ..|..... ....++ ...+.+.||+|-...
T Consensus 10 g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~-~~~~~~--~~~i~viDTPG~~d~ 62 (196)
T cd01852 10 GAGKSATGNTILGREVFESKLSASSVTKTCQK-ESAVWD--GRRVNVIDTPGLFDT 62 (196)
T ss_pred CCCHHHHHHHhhCCCccccccCCCCcccccce-eeEEEC--CeEEEEEECcCCCCc
Confidence 799999999999764 32221 11222221 122233 346899999996544
No 303
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.66 E-value=0.0048 Score=44.47 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=42.4
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehh-------------------------------hcCCccEEeccccc
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------------------------------HAGHPVRFPRGRKI 85 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------------------------------~~~~~~~~~~gnk~ 85 (111)
....+.++|++||..-+.-|..++.++++++.++. ...+.++++.-||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 56788999999999999999999999998766654 33456688999999
Q ss_pred chh
Q psy13093 86 RIM 88 (111)
Q Consensus 86 dl~ 88 (111)
|+-
T Consensus 314 D~f 316 (389)
T PF00503_consen 314 DLF 316 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 994
No 304
>KOG0082|consensus
Probab=96.63 E-value=0.0038 Score=44.53 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=42.2
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehh-------------------------------hcCCccEEeccccc
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------------------------------HAGHPVRFPRGRKI 85 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------------------------------~~~~~~~~~~gnk~ 85 (111)
+...+.++|.+||..-+.-|.+++.+++++++... -..+..++|.-||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 45889999999999999999999999998655543 33445688999999
Q ss_pred ch
Q psy13093 86 RI 87 (111)
Q Consensus 86 dl 87 (111)
||
T Consensus 273 DL 274 (354)
T KOG0082|consen 273 DL 274 (354)
T ss_pred HH
Confidence 99
No 305
>KOG1490|consensus
Probab=96.57 E-value=0.002 Score=47.92 Aligned_cols=108 Identities=17% Similarity=0.025 Sum_probs=59.4
Q ss_pred CcchHHHHHHHHhCCCCC-CCCCceeeeeEEEEEECCeeEEEEEEeCCCccccc----------ccC-cccccCCc----
Q psy13093 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD----------RLR-PLSYPQTW---- 64 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~----------~~~-~~~~~~a~---- 64 (111)
+|||||+++.....+..- +|.-|.-.-|.- .++-+-...++-||+|--+.. ++. -..++.|-
T Consensus 178 NVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfm 255 (620)
T KOG1490|consen 178 NVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFM 255 (620)
T ss_pred CCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeee
Confidence 699999988877665433 333222111111 123455678888999854321 000 01122111
Q ss_pred ---e------------eeeehhhcCCccEEecccccchhhhhchhc-------------cCceEEcccccccCC
Q psy13093 65 ---S------------LRSFALHAGHPVRFPRGRKIRIMQMIGFRD-------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 65 ---~------------~~~~~~~~~~~~~~~~gnk~dl~~~~~~~~-------------~~~~~e~SAk~~~n~ 110 (111)
+ +..+-.-..+.+.+++.||+|+++..++.+ +...+++|.-+.+++
T Consensus 256 DLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegV 329 (620)
T KOG1490|consen 256 DLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGV 329 (620)
T ss_pred echhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhce
Confidence 0 111112556677999999999965332222 567899998877764
No 306
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.50 E-value=0.0024 Score=44.26 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.5
Q ss_pred CcchHHHHHHHHhCCC
Q psy13093 1 AVGKTCLLISYTTNAF 16 (111)
Q Consensus 1 gvGKssl~~~~~~~~f 16 (111)
|||||||++.+.....
T Consensus 171 g~GKSTlin~l~~~~~ 186 (287)
T cd01854 171 GVGKSTLINALLPDLD 186 (287)
T ss_pred CCCHHHHHHHHhchhh
Confidence 7999999999987543
No 307
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.46 E-value=0.0077 Score=43.31 Aligned_cols=89 Identities=15% Similarity=0.024 Sum_probs=52.5
Q ss_pred CcchHHHHHHHHhCCC-C-CCCCCceeeeeEEEEEECC---------------eeEEEEEEeCCCcccc----cccCc--
Q psy13093 1 AVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDG---------------KPINLGLWDTAGQEDY----DRLRP-- 57 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~-~~~~~t~~~~~~~~i~~~~---------------~~~~l~iwD~~G~~~~----~~~~~-- 57 (111)
+||||||.+.+....- . .+|..|+.......+.+++ ....+++.|.+|--+- ..+-+
T Consensus 12 n~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~f 91 (368)
T TIGR00092 12 NVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQF 91 (368)
T ss_pred CCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHH
Confidence 6899999999987654 2 2333222222112222322 1347789999985432 11222
Q ss_pred -ccccCCceeeeehhhcCCccEEecccccchhh
Q psy13093 58 -LSYPQTWSLRSFALHAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 58 -~~~~~a~~~~~~~~~~~~~~~~~~gnk~dl~~ 89 (111)
...|.+|+++.+.+...++.+..+.+..|..+
T Consensus 92 L~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~ 124 (368)
T TIGR00092 92 LANIREVDIIQHVVRCFEDDIIHHVGNVDDPRD 124 (368)
T ss_pred HHHHHhCCEEEEEEeCCCCcccCccCCCCCHHH
Confidence 34678998888887776666666666666643
No 308
>KOG1707|consensus
Probab=96.44 E-value=0.021 Score=43.21 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=57.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
++|||.++..|++..+..++..+....|. ..+...++.--+.+-|.+-+ ....+...- ..+|.+.++++
T Consensus 435 ~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~ 512 (625)
T KOG1707|consen 435 NCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFE 512 (625)
T ss_pred cCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHH
Confidence 68999999999999988888788777774 34445566655666666543 333333322 34453333333
Q ss_pred ----------hcCCccEEecccccchhhh
Q psy13093 72 ----------HAGHPVRFPRGRKIRIMQM 90 (111)
Q Consensus 72 ----------~~~~~~~~~~gnk~dl~~~ 90 (111)
.....+.+.++.|+|+.+.
T Consensus 513 ~~a~v~~~~~~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 513 YLAEVYNKYFDLYKIPCLMVATKADLDEV 541 (625)
T ss_pred HHHHHHHHhhhccCCceEEEeeccccchh
Confidence 3355678899999999653
No 309
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.40 E-value=0.0013 Score=41.25 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=24.9
Q ss_pred CccEEecccccchhhh--h-c---hhc--cCceEEcccccccCC
Q psy13093 75 HPVRFPRGRKIRIMQM--I-G---FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~~--~-~---~~~--~~~~~e~SAk~~~n~ 110 (111)
+.+.+++.||+|+... . . ..+ +.+.+.+||++|.+.
T Consensus 41 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi 84 (156)
T cd01859 41 GKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred CCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccH
Confidence 4568999999998421 1 1 111 456789999999875
No 310
>PRK12288 GTPase RsgA; Reviewed
Probab=96.35 E-value=0.0043 Score=44.25 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.3
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||++.++...
T Consensus 215 gVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 215 GVGKSSLINALLPEA 229 (347)
T ss_pred CCCHHHHHHHhcccc
Confidence 899999999999654
No 311
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.34 E-value=0.006 Score=40.41 Aligned_cols=47 Identities=23% Similarity=0.187 Sum_probs=24.6
Q ss_pred CcchHHHHHHHHhCCC-CCCCC-Cceeeee-EEEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYI-PTVFDNY-SANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~-~t~~~~~-~~~i~~~~~~~~l~iwD~~G~ 49 (111)
|+||||+++-++.... ..... ...-..+ .....+++ ..+.+.||+|-
T Consensus 10 GsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl 59 (212)
T PF04548_consen 10 GSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGL 59 (212)
T ss_dssp TSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SS
T ss_pred CCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCC
Confidence 8999999999987653 33211 1111112 12224555 55789999994
No 312
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.27 E-value=0.0031 Score=38.82 Aligned_cols=97 Identities=16% Similarity=0.007 Sum_probs=51.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccccc----CcccccCCceeeeehhh----
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL----RPLSYPQTWSLRSFALH---- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~----~~~~~~~a~~~~~~~~~---- 72 (111)
|+|||+|.+.+.+... -|.-|...+|.. + -.-||+|.---... ......+++.++.+...
T Consensus 11 gcGKTtL~q~L~G~~~--lykKTQAve~~d------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~ 78 (148)
T COG4917 11 GCGKTTLFQSLYGNDT--LYKKTQAVEFND------K----GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE 78 (148)
T ss_pred ccCchhHHHHhhcchh--hhcccceeeccC------c----cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc
Confidence 7999999998876543 233444444421 1 02377774211111 12233456644433331
Q ss_pred ---------cCCccEEecccccchhhhhchhc---------cCceEEcccccccC
Q psy13093 73 ---------AGHPVRFPRGRKIRIMQMIGFRD---------RLLWGSKQAREEKN 109 (111)
Q Consensus 73 ---------~~~~~~~~~gnk~dl~~~~~~~~---------~~~~~e~SAk~~~n 109 (111)
....+.+-+..|.||.+....+. .-+.|++||-.+..
T Consensus 79 s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~g 133 (148)
T COG4917 79 SRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQG 133 (148)
T ss_pred ccCCcccccccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCccc
Confidence 11123677789999975333333 33568899876654
No 313
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.27 E-value=0.0062 Score=43.59 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=13.1
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||++.+....
T Consensus 164 nvGKStliN~l~~~~ 178 (360)
T TIGR03597 164 NVGKSSLINKLLKQN 178 (360)
T ss_pred CCCHHHHHHHHHhhc
Confidence 799999999999743
No 314
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.0084 Score=44.05 Aligned_cols=63 Identities=16% Similarity=-0.013 Sum_probs=41.0
Q ss_pred eeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccch
Q psy13093 25 FDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 25 ~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl 87 (111)
|.+.. ..++.+-....+++.||+|+++|+.=.=..+--+|..+.+.+ ...+.+++...||.|-
T Consensus 66 GISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR 145 (528)
T COG4108 66 GISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDR 145 (528)
T ss_pred CceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccc
Confidence 44443 345566678889999999999986322112223444333333 5667789999999997
No 315
>PRK12289 GTPase RsgA; Reviewed
Probab=96.17 E-value=0.005 Score=44.00 Aligned_cols=60 Identities=3% Similarity=-0.270 Sum_probs=39.4
Q ss_pred cccccCcccccCCceeeeehhh------------------cCCccEEecccccchhhh---hchh-----ccCceEEccc
Q psy13093 51 DYDRLRPLSYPQTWSLRSFALH------------------AGHPVRFPRGRKIRIMQM---IGFR-----DRLLWGSKQA 104 (111)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~~gnk~dl~~~---~~~~-----~~~~~~e~SA 104 (111)
|-..+.+..+.++|.++++.+. ..+.+.+++.||+||... .... .+...+.+||
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA 157 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISV 157 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEc
Confidence 3445666678899975555441 124457899999999421 1111 1667899999
Q ss_pred ccccCC
Q psy13093 105 REEKNE 110 (111)
Q Consensus 105 k~~~n~ 110 (111)
++|.|+
T Consensus 158 ~tg~GI 163 (352)
T PRK12289 158 ETGIGL 163 (352)
T ss_pred CCCCCH
Confidence 999875
No 316
>PRK13768 GTPase; Provisional
Probab=96.17 E-value=0.0026 Score=43.32 Aligned_cols=49 Identities=14% Similarity=0.003 Sum_probs=32.4
Q ss_pred EEEEEeCCCcccc---cccCcccccC-----Cceeeeehhh---------------------cCCccEEecccccchh
Q psy13093 40 NLGLWDTAGQEDY---DRLRPLSYPQ-----TWSLRSFALH---------------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 40 ~l~iwD~~G~~~~---~~~~~~~~~~-----a~~~~~~~~~---------------------~~~~~~~~~gnk~dl~ 88 (111)
.+.+||++|+.+. +..++.+++. +++++.+.+. ..+.+.+++.||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 6889999998774 3444334333 5665555551 2344689999999983
No 317
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.10 E-value=0.0051 Score=41.76 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.2
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||++++....
T Consensus 130 gvGKStLiN~L~~~~ 144 (245)
T TIGR00157 130 GVGKSSLINALDPSV 144 (245)
T ss_pred CCCHHHHHHHHhhhh
Confidence 799999999999753
No 318
>KOG0461|consensus
Probab=96.06 E-value=0.037 Score=39.86 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=29.8
Q ss_pred cchHHHHHHHHh----CCCCCCCCCce-e----eeeEEEEEE-------CCeeEEEEEEeCCCccc
Q psy13093 2 VGKTCLLISYTT----NAFPGEYIPTV-F----DNYSANVMV-------DGKPINLGLWDTAGQED 51 (111)
Q Consensus 2 vGKssl~~~~~~----~~f~~~~~~t~-~----~~~~~~i~~-------~~~~~~l~iwD~~G~~~ 51 (111)
+|||+|+.++.. ..|+.+..++. | .-|. .+.+ .++++.+.+.|++|+..
T Consensus 18 SGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS-~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 18 SGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFS-TMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CchHHHHHHHHhhccchhhccCCcccccceeEeecce-eeecccccccCccccceeEEEeCCCcHH
Confidence 799999999874 23444322221 1 1121 1121 36788999999999864
No 319
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.01 E-value=0.0056 Score=39.11 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.5
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||++.+....
T Consensus 45 GvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 45 GVGKSSLINALLPEA 59 (161)
T ss_dssp TSSHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHhhc
Confidence 899999999999863
No 320
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.017 Score=44.85 Aligned_cols=51 Identities=16% Similarity=-0.015 Sum_probs=40.8
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccchh
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
.+.+++-||+|+-+|..-....+|-+|+.+.+++ .-.+.+.++.-||+|..
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL 141 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc
Confidence 5899999999999998888888888888656555 33344688999999983
No 321
>PRK12289 GTPase RsgA; Reviewed
Probab=95.89 E-value=0.016 Score=41.42 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=13.2
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||++.+..+.
T Consensus 182 gVGKSSLIN~L~~~~ 196 (352)
T PRK12289 182 GVGKSSLINRLIPDV 196 (352)
T ss_pred CCCHHHHHHHHcCcc
Confidence 899999999999653
No 322
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=95.74 E-value=0.024 Score=37.91 Aligned_cols=52 Identities=23% Similarity=0.072 Sum_probs=32.3
Q ss_pred CcchHHHHHHHHhC--CCCCC---CCCceeeeeEEEEEECCeeEEEEEEeCCCcccc
Q psy13093 1 AVGKTCLLISYTTN--AFPGE---YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~~~---~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 52 (111)
++|||+|++++... .|... ...|.|.-....-...+....+.+.||.|....
T Consensus 17 ~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 17 SSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR 73 (224)
T ss_pred CCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcc
Confidence 58999999999988 66422 223334433211011134578999999997654
No 323
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.70 E-value=0.041 Score=40.89 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=38.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC--CeeEEEEEEeCCCcccccccCcccc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD--GKPINLGLWDTAGQEDYDRLRPLSY 60 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~--~~~~~l~iwD~~G~~~~~~~~~~~~ 60 (111)
++|||+|+.++... +.+.++.|.+|. -.+.=+ +....+.+|-.+|...+..+.+.-+
T Consensus 35 ~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~l 94 (472)
T PF05783_consen 35 GSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFAL 94 (472)
T ss_pred CCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccC
Confidence 68999999998653 356778888875 222211 2346789999998777776654433
No 324
>KOG3905|consensus
Probab=95.68 E-value=0.038 Score=39.48 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=33.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEE--CCeeEEEEEEeCCCcccccc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV--DGKPINLGLWDTAGQEDYDR 54 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~--~~~~~~l~iwD~~G~~~~~~ 54 (111)
|+|||||+.++..-+ .+.+-.|..|. -.+.- .+...++.+|-..|..-...
T Consensus 62 ~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~ 115 (473)
T KOG3905|consen 62 GSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKG 115 (473)
T ss_pred CCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhh
Confidence 689999999987654 44555677764 22221 23456788888888654333
No 325
>PRK13796 GTPase YqeH; Provisional
Probab=95.63 E-value=0.012 Score=42.26 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||||++++...
T Consensus 170 NvGKSTLiN~L~~~ 183 (365)
T PRK13796 170 NVGKSTLINRIIKE 183 (365)
T ss_pred CCcHHHHHHHHHhh
Confidence 79999999999864
No 326
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.60 E-value=0.046 Score=34.20 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=24.3
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCeeEEEEEEeCCC
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAG 48 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G 48 (111)
|||||||++.+....- .....|..-... ..+.++ ..+.+.||+|
T Consensus 110 ~~GKstlin~l~~~~~~~~~~~~~~t~~~-~~~~~~---~~~~liDtPG 154 (155)
T cd01849 110 NVGKSSVINALLNKLKLKVGNVPGTTTSQ-QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred CCCHHHHHHHHHccccccccCCCCcccce-EEEEec---CCEEEEECCC
Confidence 7999999999997542 111111111111 112222 3478999998
No 327
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=95.55 E-value=0.031 Score=43.27 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=29.7
Q ss_pred CcchHHHHHHHHhCC-CCCCC--CCceeeeeEEEEEECCeeEEEEEEeCCCcccc
Q psy13093 1 AVGKTCLLISYTTNA-FPGEY--IPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (111)
Q Consensus 1 gvGKssl~~~~~~~~-f~~~~--~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~ 52 (111)
||||||+++.++... |.... ..|... .......+ ...+.+.||+|-...
T Consensus 128 GVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~id--G~~L~VIDTPGL~dt 179 (763)
T TIGR00993 128 GVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQ--GVKIRVIDTPGLKSS 179 (763)
T ss_pred CCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEEC--CceEEEEECCCCCcc
Confidence 799999999999764 43321 122221 11112233 356899999997653
No 328
>PRK00098 GTPase RsgA; Reviewed
Probab=95.52 E-value=0.015 Score=40.52 Aligned_cols=35 Identities=11% Similarity=-0.109 Sum_probs=24.6
Q ss_pred ccEEecccccchhhh-h------chhc--cCceEEcccccccCC
Q psy13093 76 PVRFPRGRKIRIMQM-I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 76 ~~~~~~gnk~dl~~~-~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+++.||+|+... . ...+ +..++.+||++|.|.
T Consensus 112 ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 112 IKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred CCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 458899999999421 1 1111 567899999999875
No 329
>PRK00098 GTPase RsgA; Reviewed
Probab=95.46 E-value=0.016 Score=40.42 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=13.0
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||++.+....
T Consensus 174 gvGKStlin~l~~~~ 188 (298)
T PRK00098 174 GVGKSTLLNALAPDL 188 (298)
T ss_pred CCCHHHHHHHHhCCc
Confidence 799999999998653
No 330
>KOG2655|consensus
Probab=95.41 E-value=0.045 Score=39.33 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=32.5
Q ss_pred CcchHHHHHHHHhCCCCCC---------CCCceeeeeEE-EEEECCeeEEEEEEeCCCccc
Q psy13093 1 AVGKTCLLISYTTNAFPGE---------YIPTVFDNYSA-NVMVDGKPINLGLWDTAGQED 51 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~---------~~~t~~~~~~~-~i~~~~~~~~l~iwD~~G~~~ 51 (111)
|.|||||++.+....+..+ ...|+.....+ .+.-+|..++|++-||+|-.+
T Consensus 31 GlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 31 GLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 7899999999776655432 11122332222 223357789999999998554
No 331
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=95.40 E-value=0.059 Score=38.70 Aligned_cols=52 Identities=27% Similarity=0.368 Sum_probs=35.7
Q ss_pred CcchHHHHHHHHhCCCCCC----------CCCceeeeeEE-EEEECCeeEEEEEEeCCCcccc
Q psy13093 1 AVGKTCLLISYTTNAFPGE----------YIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDY 52 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~----------~~~t~~~~~~~-~i~~~~~~~~l~iwD~~G~~~~ 52 (111)
|.|||++++.++....... ..|++.....+ .+.-++..+.|.+-||+|-.++
T Consensus 33 G~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 33 GLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred CCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 7899999999987633222 34555555433 4444678899999999996543
No 332
>PRK09866 hypothetical protein; Provisional
Probab=95.22 E-value=0.021 Score=44.03 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=52.6
Q ss_pred CCceeeeeEEEEEECCeeEEEEEEeCCCcccc-----cccCcccccCCceeeeehh-----------------hcCC-cc
Q psy13093 21 IPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-----DRLRPLSYPQTWSLRSFAL-----------------HAGH-PV 77 (111)
Q Consensus 21 ~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~-----~~~~~~~~~~a~~~~~~~~-----------------~~~~-~~ 77 (111)
.|-+...|.+.---......+.+.||+|-..- ..+....++.+|.++.+.+ ...+ .+
T Consensus 212 ~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P 291 (741)
T PRK09866 212 IPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP 291 (741)
T ss_pred CceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC
Confidence 45555555431101122456788999997542 1122346889997766665 2221 37
Q ss_pred EEecccccchhh-----hhchhc---------cC---ceEEcccccccCC
Q psy13093 78 RFPRGRKIRIMQ-----MIGFRD---------RL---LWGSKQAREEKNE 110 (111)
Q Consensus 78 ~~~~gnk~dl~~-----~~~~~~---------~~---~~~e~SAk~~~n~ 110 (111)
++++.||+|+.. .....+ .. ..+.+||+.|.|.
T Consensus 292 VILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~ni 341 (741)
T PRK09866 292 LYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLA 341 (741)
T ss_pred EEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCH
Confidence 899999999842 111111 12 3588999999986
No 333
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.02 E-value=0.016 Score=40.56 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||||++++...
T Consensus 174 GVGKSSLiN~L~p~ 187 (301)
T COG1162 174 GVGKSTLINALLPE 187 (301)
T ss_pred CCcHHHHHHhhCch
Confidence 89999999999863
No 334
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.072 Score=34.31 Aligned_cols=45 Identities=27% Similarity=0.215 Sum_probs=32.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCC
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTA 47 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~ 47 (111)
|||||+++.+..+.=-.. .-++|-.+...+.-+++.+-+.|-|++
T Consensus 15 GvGKtTl~~ki~e~L~~~--g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 15 GVGKTTLVLKIAEKLREK--GYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CccHHHHHHHHHHHHHhc--CceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 899999999987532111 134566666677778889999999987
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.78 E-value=0.039 Score=34.01 Aligned_cols=35 Identities=9% Similarity=-0.069 Sum_probs=24.0
Q ss_pred CccEEecccccchhhhhchh---c-----cCceEEcccccccC
Q psy13093 75 HPVRFPRGRKIRIMQMIGFR---D-----RLLWGSKQAREEKN 109 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~~~~~~---~-----~~~~~e~SAk~~~n 109 (111)
+.+.+++.||+|+....... + +...+.+||+++.+
T Consensus 42 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 42 RKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred CCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 55789999999994211111 1 45678999998864
No 336
>KOG1491|consensus
Probab=94.72 E-value=0.18 Score=36.12 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHhCCCCC-CCC-CceeeeeEEEEEE---------------CCeeEEEEEEeCCCccccc----ccCc--
Q psy13093 1 AVGKTCLLISYTTNAFPG-EYI-PTVFDNYSANVMV---------------DGKPINLGLWDTAGQEDYD----RLRP-- 57 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~~-~t~~~~~~~~i~~---------------~~~~~~l~iwD~~G~~~~~----~~~~-- 57 (111)
+|||||+.+-+....... +|. .||.-+- ..+.+ ...+..|+++|+||.-+-- -+-+
T Consensus 30 NvGKST~fnalT~~~a~~~NfPF~TIdPn~-a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~F 108 (391)
T KOG1491|consen 30 NVGKSTFFNALTKSKAGAANFPFCTIDPNE-ARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKF 108 (391)
T ss_pred CCchHHHHHHHhcCCCCccCCCcceecccc-ceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHH
Confidence 699999999998765432 221 2222211 11221 1235789999999864421 2222
Q ss_pred -ccccCCceeeeehhhcCCccEEecccccchhh
Q psy13093 58 -LSYPQTWSLRSFALHAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 58 -~~~~~a~~~~~~~~~~~~~~~~~~gnk~dl~~ 89 (111)
..+|.+|++.-++....+..+..+-..+|-.+
T Consensus 109 Ls~iR~vDaifhVVr~f~d~di~hve~~vDPvr 141 (391)
T KOG1491|consen 109 LSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVR 141 (391)
T ss_pred HHhhhhccceeEEEEecCcccceeccCCCCchh
Confidence 34678888877777666666666666666544
No 337
>KOG3859|consensus
Probab=94.39 E-value=0.091 Score=36.84 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-E--EEEE--CCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-A--NVMV--DGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~--~i~~--~~~~~~l~iwD~~G~ 49 (111)
|.|||+|+..+.+-.|..+..+....... + +..+ .+..++|.|.||.|-
T Consensus 52 g~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 52 GLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred CccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 68999999999999887664443332221 1 2222 356789999999984
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=94.28 E-value=0.05 Score=38.89 Aligned_cols=36 Identities=6% Similarity=-0.198 Sum_probs=25.0
Q ss_pred CccEEecccccchhhhh---------ch--hccCceEEcccccccCC
Q psy13093 75 HPVRFPRGRKIRIMQMI---------GF--RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~~~---------~~--~~~~~~~e~SAk~~~n~ 110 (111)
+.+.+++.||+||.... .. ..+..++++||+++++.
T Consensus 150 ~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gi 196 (347)
T PRK12288 150 GIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGL 196 (347)
T ss_pred CCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCH
Confidence 34578899999994311 11 11567899999999875
No 339
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.28 E-value=0.02 Score=37.63 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=24.5
Q ss_pred EEecccccchhhhhc------------hhccCceEEcccccccCC
Q psy13093 78 RFPRGRKIRIMQMIG------------FRDRLLWGSKQAREEKNE 110 (111)
Q Consensus 78 ~~~~gnk~dl~~~~~------------~~~~~~~~e~SAk~~~n~ 110 (111)
.+++.||+|+...+. .....+++++||++|+|+
T Consensus 140 d~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 140 DLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred cEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 379999999963211 112688999999999986
No 340
>KOG0467|consensus
Probab=94.17 E-value=0.059 Score=42.12 Aligned_cols=85 Identities=18% Similarity=0.001 Sum_probs=54.2
Q ss_pred chHHHHHHHHhC------------CCCC--CCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceee
Q psy13093 3 GKTCLLISYTTN------------AFPG--EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLR 67 (111)
Q Consensus 3 GKssl~~~~~~~------------~f~~--~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~ 67 (111)
|||||+-.++-. +|.+ +...+-|.... .-|..-.+.+.+.+-|++|+-+|.+-.....+-+|+..
T Consensus 21 gktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~al 100 (887)
T KOG0467|consen 21 GKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGAL 100 (887)
T ss_pred CccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcE
Confidence 999998887632 1111 11223333332 23333456788999999999999988877777777644
Q ss_pred eehh---------------hcCCc-cEEecccccch
Q psy13093 68 SFAL---------------HAGHP-VRFPRGRKIRI 87 (111)
Q Consensus 68 ~~~~---------------~~~~~-~~~~~gnk~dl 87 (111)
.+.+ .|.+. .-+++-||+|-
T Consensus 101 vlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 101 VLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred EEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 4444 23333 37899999993
No 341
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=94.16 E-value=0.043 Score=38.11 Aligned_cols=35 Identities=6% Similarity=-0.269 Sum_probs=24.5
Q ss_pred ccEEecccccchhhhhc------hh--ccCceEEcccccccCC
Q psy13093 76 PVRFPRGRKIRIMQMIG------FR--DRLLWGSKQAREEKNE 110 (111)
Q Consensus 76 ~~~~~~gnk~dl~~~~~------~~--~~~~~~e~SAk~~~n~ 110 (111)
.+.+++.||+||..... .. .+.+++.+||++|.|.
T Consensus 110 ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 110 IEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred CCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 45789999999942211 11 1567899999999874
No 342
>KOG1547|consensus
Probab=93.93 E-value=0.099 Score=35.94 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=31.9
Q ss_pred CcchHHHHHHHHhCCCCC---------CCCCceeeee-EEEEEECCeeEEEEEEeCCCccc
Q psy13093 1 AVGKTCLLISYTTNAFPG---------EYIPTVFDNY-SANVMVDGKPINLGLWDTAGQED 51 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~---------~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~ 51 (111)
|.|||+|++-+...+... .+..|+.... ...+.-++-.++|.+-||+|-.+
T Consensus 56 glgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 56 GLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred CCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 679999999876554332 1222333322 12333367789999999998554
No 343
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=0.14 Score=36.96 Aligned_cols=94 Identities=18% Similarity=0.113 Sum_probs=59.3
Q ss_pred CcchHHHHHHHHhCCCC-CC-----CCCceeeeeEEEEE-------EC----CeeEEEEEEeCCCccc----ccccCcc-
Q psy13093 1 AVGKTCLLISYTTNAFP-GE-----YIPTVFDNYSANVM-------VD----GKPINLGLWDTAGQED----YDRLRPL- 58 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~-----~~~t~~~~~~~~i~-------~~----~~~~~l~iwD~~G~~~----~~~~~~~- 58 (111)
+||||||.+-.+...-. .+ ..|.+|..+....- .. -....+++.|.+|.-+ -+-|=+.
T Consensus 12 NVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkF 91 (372)
T COG0012 12 NVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKF 91 (372)
T ss_pred CCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHH
Confidence 69999999999876532 22 34555554422111 11 1246789999998532 2233333
Q ss_pred --cccCCceeeeehhhcCCccEEecccccchhhhhchh
Q psy13093 59 --SYPQTWSLRSFALHAGHPVRFPRGRKIRIMQMIGFR 94 (111)
Q Consensus 59 --~~~~a~~~~~~~~~~~~~~~~~~gnk~dl~~~~~~~ 94 (111)
-+|.+|+++-+++-..+..+.-+..++|-.+.+++-
T Consensus 92 L~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I 129 (372)
T COG0012 92 LDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEII 129 (372)
T ss_pred HHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHH
Confidence 367899988888877777778787888875544443
No 344
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.62 E-value=0.15 Score=32.66 Aligned_cols=47 Identities=28% Similarity=0.389 Sum_probs=27.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeC-CCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDT-AGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~-~G~ 49 (111)
|+||||++.+++..-- ....+. +-.+...+--++..+-+.+-|. .|.
T Consensus 9 G~GKTTll~k~i~~l~-~~~~~v-~Gf~t~evr~~g~r~GF~iv~l~~g~ 56 (168)
T PF03266_consen 9 GVGKTTLLKKVIEELK-KKGLPV-GGFYTEEVRENGRRIGFDIVDLNSGE 56 (168)
T ss_dssp TSSHHHHHHHHHHHHH-HTCGGE-EEEEEEEEETTSSEEEEEEEET-TS-
T ss_pred CCCHHHHHHHHHHHhh-ccCCcc-ceEEeecccCCCceEEEEEEECcCCC
Confidence 7999999999874311 111232 3233444444667777888887 444
No 345
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=93.35 E-value=0.16 Score=37.61 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
++|||||++||...
T Consensus 27 rtGKSTfIn~fm~q 40 (492)
T TIGR02836 27 RTGKSTFIKKFMEL 40 (492)
T ss_pred CCChHHHHHHHHhh
Confidence 58999999999876
No 346
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.91 E-value=0.074 Score=31.53 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
||||||++.++...
T Consensus 9 gsGKST~a~~La~~ 22 (121)
T PF13207_consen 9 GSGKSTLAKELAER 22 (121)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999863
No 347
>KOG2486|consensus
Probab=92.89 E-value=0.17 Score=35.34 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=31.5
Q ss_pred CcchHHHHHHHHhCCCCCC-CCCceeeeeEEEEEECCeeEEEEEEeCCC----------cccccccCcccccC
Q psy13093 1 AVGKTCLLISYTTNAFPGE-YIPTVFDNYSANVMVDGKPINLGLWDTAG----------QEDYDRLRPLSYPQ 62 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~-~~~t~~~~~~~~i~~~~~~~~l~iwD~~G----------~~~~~~~~~~~~~~ 62 (111)
+||||||++-+..-+-... ..++.|.. +.+..-..+-.+.+-|.+| .+++..+...|+.+
T Consensus 146 NVGKSSLln~~~r~k~~~~t~k~K~g~T--q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~le 216 (320)
T KOG2486|consen 146 NVGKSSLLNDLVRVKNIADTSKSKNGKT--QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLE 216 (320)
T ss_pred cccHHHHHhhhhhhhhhhhhcCCCCccc--eeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHh
Confidence 6999999999886543222 12233322 1111112234566778888 33444555555543
No 348
>PF13173 AAA_14: AAA domain
Probab=92.76 E-value=0.068 Score=32.41 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=13.6
Q ss_pred CcchHHHHHHHHhCCC
Q psy13093 1 AVGKTCLLISYTTNAF 16 (111)
Q Consensus 1 gvGKssl~~~~~~~~f 16 (111)
+||||+++.++...-.
T Consensus 12 ~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 12 GVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 6999999999997544
No 349
>KOG0410|consensus
Probab=92.58 E-value=0.093 Score=37.47 Aligned_cols=32 Identities=13% Similarity=-0.130 Sum_probs=24.5
Q ss_pred EEecccccchhhhhchhccCceEEcccccccC
Q psy13093 78 RFPRGRKIRIMQMIGFRDRLLWGSKQAREEKN 109 (111)
Q Consensus 78 ~~~~gnk~dl~~~~~~~~~~~~~e~SAk~~~n 109 (111)
.+.+-||+|.+......+.-.-..+||++|+.
T Consensus 297 mieVdnkiD~e~~~~e~E~n~~v~isaltgdg 328 (410)
T KOG0410|consen 297 MIEVDNKIDYEEDEVEEEKNLDVGISALTGDG 328 (410)
T ss_pred HHhhccccccccccCccccCCccccccccCcc
Confidence 56788999998777666633367789999875
No 350
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.51 E-value=0.09 Score=31.22 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
||||||++..+...
T Consensus 8 GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 8 GSGKTTIAKELAER 21 (129)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999888754
No 351
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=92.32 E-value=0.091 Score=33.78 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+++++.
T Consensus 10 GsGKTTli~~ll~ 22 (178)
T PF02492_consen 10 GSGKTTLINHLLK 22 (178)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999994
No 352
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=92.29 E-value=0.16 Score=31.75 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=13.6
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
++|||||++-+++.+
T Consensus 8 ssGKSTliNaLlG~~ 22 (168)
T PF00350_consen 8 SSGKSTLINALLGRP 22 (168)
T ss_dssp TSSHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHhcc
Confidence 589999999999876
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=91.90 E-value=0.18 Score=31.59 Aligned_cols=35 Identities=3% Similarity=-0.264 Sum_probs=22.4
Q ss_pred ccEEecccccchhhhhch-------hccCce--EEcccccccCC
Q psy13093 76 PVRFPRGRKIRIMQMIGF-------RDRLLW--GSKQAREEKNE 110 (111)
Q Consensus 76 ~~~~~~gnk~dl~~~~~~-------~~~~~~--~e~SAk~~~n~ 110 (111)
.+.+++.||+|+...... .+...+ +.+||+.+.|.
T Consensus 40 ~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~ 83 (157)
T cd01858 40 KHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGK 83 (157)
T ss_pred CCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccH
Confidence 568999999999422111 112233 56899998874
No 354
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.61 E-value=0.13 Score=30.76 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++.++...
T Consensus 14 G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 14 GSGKTTLIKRLARQ 27 (131)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999864
No 355
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.46 E-value=0.13 Score=31.26 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++.++..
T Consensus 9 gsGKSt~a~~l~~ 21 (143)
T PF13671_consen 9 GSGKSTLAKRLAK 21 (143)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999884
No 356
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=91.34 E-value=0.34 Score=35.70 Aligned_cols=103 Identities=17% Similarity=0.013 Sum_probs=56.2
Q ss_pred chHHHHHHHHhCCC---CCCC--CCceeeeeEEEEEECCeeEEEEEEeCCCccccc-ccCcccccCCceeeeeh------
Q psy13093 3 GKTCLLISYTTNAF---PGEY--IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD-RLRPLSYPQTWSLRSFA------ 70 (111)
Q Consensus 3 GKssl~~~~~~~~f---~~~~--~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~-~~~~~~~~~a~~~~~~~------ 70 (111)
|||+|+.-+....- ++.- -.|+...|. ..+-....+.+-|.+|.+++- +|.. -....|..+++.
T Consensus 12 gkT~L~~altg~~~d~l~EekKRG~TiDlg~~---y~~~~d~~~~fIDvpgh~~~i~~mia-g~~~~d~alLvV~~deGl 87 (447)
T COG3276 12 GKTTLLKALTGGVTDRLPEEKKRGITIDLGFY---YRKLEDGVMGFIDVPGHPDFISNLLA-GLGGIDYALLVVAADEGL 87 (447)
T ss_pred cchhhhhhhcccccccchhhhhcCceEeeeeE---eccCCCCceEEeeCCCcHHHHHHHHh-hhcCCceEEEEEeCccCc
Confidence 89999988875432 1111 112211221 112233478899999999984 3332 222233222222
Q ss_pred -----------hhcCCccEEecccccchhhhh-------ch-----hccCceEEcccccccC
Q psy13093 71 -----------LHAGHPVRFPRGRKIRIMQMI-------GF-----RDRLLWGSKQAREEKN 109 (111)
Q Consensus 71 -----------~~~~~~~~~~~gnk~dl~~~~-------~~-----~~~~~~~e~SAk~~~n 109 (111)
+...-+-.+++.+|+|..... .. .++++.+-+||++|..
T Consensus 88 ~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G 149 (447)
T COG3276 88 MAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRG 149 (447)
T ss_pred chhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCC
Confidence 244444578889999985311 11 1155668899999874
No 357
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.34 E-value=0.54 Score=28.73 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=31.8
Q ss_pred CcchHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCe-eEEEEEEeCCCcccccccC--cccccCCceeeeehhhcCC
Q psy13093 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGK-PINLGLWDTAGQEDYDRLR--PLSYPQTWSLRSFALHAGH 75 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~--~~~~t~~~~~~~~i~~~~~-~~~l~iwD~~G~~~~~~~~--~~~~~~a~~~~~~~~~~~~ 75 (111)
|+|||+|++-++..--.. -..||.... ......+. -+.+-++-..+.+....+- ...+.++-.++.+-+.+.+
T Consensus 25 GaGKTtf~r~l~~~lg~~~~V~SPTF~l~--~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~IEW~e~~~~ 102 (123)
T PF02367_consen 25 GAGKTTFVRGLARALGIDEEVTSPTFSLV--NEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVIEWPERLKE 102 (123)
T ss_dssp TSSHHHHHHHHHHHTT--S----TTTTSE--EEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEEESGGGGTT
T ss_pred CCCHHHHHHHHHHHcCCCCCcCCCCeEEE--EEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEEECcccccc
Confidence 799999999887643221 223443221 22222222 2444555555555544432 2233333334555444433
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=91.23 E-value=0.2 Score=31.90 Aligned_cols=36 Identities=11% Similarity=-0.128 Sum_probs=23.7
Q ss_pred CccEEecccccchhhhhchh---c-----cCceEEcccccccCC
Q psy13093 75 HPVRFPRGRKIRIMQMIGFR---D-----RLLWGSKQAREEKNE 110 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~~~~~~---~-----~~~~~e~SAk~~~n~ 110 (111)
+.+.+++.||+|+....... + ....+.+||+++.+.
T Consensus 46 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi 89 (171)
T cd01856 46 NKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGV 89 (171)
T ss_pred CCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccH
Confidence 45688999999995321111 1 234578999998764
No 359
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.12 E-value=0.15 Score=32.25 Aligned_cols=13 Identities=38% Similarity=0.445 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.++..
T Consensus 34 G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 34 GSGKTSLLRALLD 46 (185)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998764
No 360
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.47 E-value=0.18 Score=32.86 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=13.2
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|+|||||+..+....
T Consensus 30 g~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 30 GSGKTSLLKEFINEL 44 (234)
T ss_dssp TSSHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHh
Confidence 799999999998754
No 361
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=90.47 E-value=0.18 Score=33.75 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.++.+.
T Consensus 14 G~GKSTLa~~La~~ 27 (216)
T COG1428 14 GAGKSTLAQALAEH 27 (216)
T ss_pred ccCHHHHHHHHHHH
Confidence 89999999999863
No 362
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.29 E-value=0.22 Score=26.88 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 9 gsGKst~~~~l~~~ 22 (69)
T cd02019 9 GSGKSTVAKKLAEQ 22 (69)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999988854
No 363
>KOG0099|consensus
Probab=89.88 E-value=0.16 Score=35.34 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehh
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL 71 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~ 71 (111)
.++++++|.+||.+-+.-|-..+.+..+++.+..
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~a 234 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 234 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEe
Confidence 5779999999999999999999999998766653
No 364
>PRK08233 hypothetical protein; Provisional
Probab=89.69 E-value=0.23 Score=31.47 Aligned_cols=14 Identities=36% Similarity=0.283 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++.++...
T Consensus 13 GsGKtTla~~L~~~ 26 (182)
T PRK08233 13 GGGKTTLTERLTHK 26 (182)
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999998853
No 365
>KOG3887|consensus
Probab=89.64 E-value=0.094 Score=36.08 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=36.8
Q ss_pred cchHHHHHHHHhCCCCCCCCCceeeeeEEEEEEC---CeeEEEEEEeCCCccccccc---CcccccCCceeeeehh
Q psy13093 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD---GKPINLGLWDTAGQEDYDRL---RPLSYPQTWSLRSFAL 71 (111)
Q Consensus 2 vGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~---~~~~~l~iwD~~G~~~~~~~---~~~~~~~a~~~~~~~~ 71 (111)
+||||+-+......-+ .-|.-.+-+..++.+ +.-+.+++||.+||-.|-.- ...-++++-+++.+.+
T Consensus 38 sGKsSI~KVVFhkMsP---neTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvID 110 (347)
T KOG3887|consen 38 SGKSSIQKVVFHKMSP---NETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVID 110 (347)
T ss_pred cCcchhhheeeeccCC---CceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEe
Confidence 7999996665443222 122222222222222 34588999999999876321 1233566666555544
No 366
>KOG1486|consensus
Probab=89.60 E-value=2.5 Score=29.54 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=24.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECC----eeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG----KPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~----~~~~l~iwD~~G~ 49 (111)
.||||+|+.......- ..-..+|...-+++| ..-.+|+.|.+|-
T Consensus 72 SVGKStlLs~iT~T~S-----eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGI 119 (364)
T KOG1486|consen 72 SVGKSTLLSKITSTHS-----EAASYEFTTLTCIPGVIHYNGANIQLLDLPGI 119 (364)
T ss_pred CccHHHHHHHhhcchh-----hhhceeeeEEEeecceEEecCceEEEecCccc
Confidence 5899999988775322 111223332222322 2346788998873
No 367
>PF05729 NACHT: NACHT domain
Probab=89.56 E-value=0.24 Score=30.64 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++.+++..
T Consensus 10 G~GKStll~~~~~~ 23 (166)
T PF05729_consen 10 GSGKSTLLRKLAQQ 23 (166)
T ss_pred CCChHHHHHHHHHH
Confidence 89999999998754
No 368
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.45 E-value=0.28 Score=26.29 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=9.7
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||||+.-+.
T Consensus 33 GsGKSTllDAi~ 44 (62)
T PF13555_consen 33 GSGKSTLLDAIQ 44 (62)
T ss_pred CCCHHHHHHHHH
Confidence 799999986554
No 369
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.40 E-value=0.18 Score=33.14 Aligned_cols=34 Identities=6% Similarity=-0.020 Sum_probs=24.1
Q ss_pred cEEecccccchhhhhc-----hh-------ccCceEEcccccccCC
Q psy13093 77 VRFPRGRKIRIMQMIG-----FR-------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 77 ~~~~~gnk~dl~~~~~-----~~-------~~~~~~e~SAk~~~n~ 110 (111)
+.+++.||+|+..... .. ...+++++||++|.|+
T Consensus 150 a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv 195 (207)
T TIGR00073 150 ADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGL 195 (207)
T ss_pred CCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 3589999999953111 11 1478999999999885
No 370
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=89.28 E-value=0.28 Score=29.16 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=12.5
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 8 G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 8 GTGKTTLARALAQY 21 (132)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCeeHHHHHHHhh
Confidence 89999999999864
No 371
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.96 E-value=0.29 Score=28.78 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=14.1
Q ss_pred CcchHHHHHHHHhCCCC
Q psy13093 1 AVGKTCLLISYTTNAFP 17 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~ 17 (111)
|+|||+++..++..-..
T Consensus 12 G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 12 GSGKTTLARALARELGP 28 (148)
T ss_pred CCcHHHHHHHHHhccCC
Confidence 89999999999876543
No 372
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.76 E-value=0.31 Score=29.65 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 9 G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 9 GTGKTTLARELAAL 22 (139)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998753
No 373
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=88.76 E-value=0.28 Score=30.83 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+..+...
T Consensus 9 stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 9 STGKTTLIEALAAR 22 (163)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc
Confidence 68999999999854
No 374
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=88.67 E-value=0.29 Score=34.61 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+++++..
T Consensus 14 GaGKTTll~~ll~~ 27 (318)
T PRK11537 14 GAGKTTLLRHILNE 27 (318)
T ss_pred CCCHHHHHHHHHhc
Confidence 79999999999864
No 375
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.45 E-value=0.34 Score=28.46 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..++..
T Consensus 8 G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 8 GIGKSTLAKELAKD 21 (107)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999997643
No 376
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.19 E-value=0.34 Score=31.44 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+..-
T Consensus 9 GsGKSTl~~~l~~~ 22 (198)
T cd02023 9 GSGKTTVAEEIIEQ 22 (198)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999888653
No 377
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.12 E-value=0.36 Score=28.70 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.9
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|+|||+++..+...-
T Consensus 29 G~GKT~l~~~i~~~~ 43 (151)
T cd00009 29 GTGKTTLARAIANEL 43 (151)
T ss_pred CCCHHHHHHHHHHHh
Confidence 899999999988654
No 378
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=88.12 E-value=0.37 Score=29.86 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..++..
T Consensus 32 GaGKTtl~~~l~~~ 45 (133)
T TIGR00150 32 GAGKTTLVQGLLQG 45 (133)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999875
No 379
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=88.10 E-value=0.35 Score=31.79 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.+++..
T Consensus 32 gsGKTTli~~l~~~ 45 (207)
T TIGR00073 32 GSGKTTLIEKLIDN 45 (207)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999864
No 380
>PRK07261 topology modulation protein; Provisional
Probab=88.00 E-value=0.36 Score=30.87 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 10 GsGKSTla~~l~~ 22 (171)
T PRK07261 10 GSGKSTLARKLSQ 22 (171)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999764
No 381
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=87.95 E-value=0.52 Score=32.49 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=23.8
Q ss_pred CccEEecccccchhhhh---ch----hc-cCceEEcccccccCC
Q psy13093 75 HPVRFPRGRKIRIMQMI---GF----RD-RLLWGSKQAREEKNE 110 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~~~---~~----~~-~~~~~e~SAk~~~n~ 110 (111)
+.+.+++.||+|+.... .. .. +...+.+||+++.+.
T Consensus 48 ~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi 91 (276)
T TIGR03596 48 NKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGV 91 (276)
T ss_pred CCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccH
Confidence 45689999999994211 11 11 335678999998764
No 382
>KOG1144|consensus
Probab=87.85 E-value=0.54 Score=37.24 Aligned_cols=86 Identities=20% Similarity=0.081 Sum_probs=57.6
Q ss_pred cchHHHHHHHHhCCCCC----CCCCceeeeeEEEEEE---------CCe----eEEEEEEeCCCcccccccCcccccCCc
Q psy13093 2 VGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMV---------DGK----PINLGLWDTAGQEDYDRLRPLSYPQTW 64 (111)
Q Consensus 2 vGKssl~~~~~~~~f~~----~~~~t~~~~~~~~i~~---------~~~----~~~l~iwD~~G~~~~~~~~~~~~~~a~ 64 (111)
+|||-|+.......... .....||..|.....+ +++ ---+.+-||+|++.|..++...-.-+|
T Consensus 486 TGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~ 565 (1064)
T KOG1144|consen 486 TGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCD 565 (1064)
T ss_pred ccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccc
Confidence 69999998877543221 1234456655422111 111 124677899999999999998888888
Q ss_pred eeeeehh----------------hcCCccEEecccccch
Q psy13093 65 SLRSFAL----------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 65 ~~~~~~~----------------~~~~~~~~~~gnk~dl 87 (111)
..|++.+ ...+.++++.-||+|-
T Consensus 566 ~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 566 LAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDR 604 (1064)
T ss_pred eEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhh
Confidence 7666665 4456678899999997
No 383
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=87.81 E-value=0.37 Score=31.07 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 9 GsGKSTl~~~L~~ 21 (193)
T cd01673 9 GAGKSTLAKELAE 21 (193)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 384
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=87.79 E-value=0.37 Score=32.03 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 9 GsGKSTl~~~L~~ 21 (219)
T cd02030 9 ASGKGKLAKELAE 21 (219)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 385
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=87.55 E-value=0.41 Score=31.43 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=13.4
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||+..+....
T Consensus 14 G~GKsTl~k~L~~~~ 28 (191)
T COG0194 14 GVGKSTLVKALLEDD 28 (191)
T ss_pred CCCHHHHHHHHHhhc
Confidence 899999999998765
No 386
>PRK08118 topology modulation protein; Reviewed
Probab=87.47 E-value=0.4 Score=30.57 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.++...
T Consensus 11 GsGKSTlak~L~~~ 24 (167)
T PRK08118 11 GSGKSTLARQLGEK 24 (167)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998854
No 387
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=87.44 E-value=0.41 Score=30.49 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++.++...
T Consensus 11 GsGKttl~~~l~~~ 24 (179)
T TIGR02322 11 GAGKDTLLDYARAR 24 (179)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988754
No 388
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=87.30 E-value=0.37 Score=29.11 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.-+..
T Consensus 21 GsGKStLl~~l~g 33 (137)
T PF00005_consen 21 GSGKSTLLKALAG 33 (137)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCccccceeeecc
Confidence 7999999987664
No 389
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=87.28 E-value=0.44 Score=30.07 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=13.0
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|+|||+++.++....
T Consensus 10 GsGKTtl~~~l~~~~ 24 (158)
T cd03112 10 GAGKTTLLNHILTEQ 24 (158)
T ss_pred CCCHHHHHHHHHhcc
Confidence 799999999998653
No 390
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=87.25 E-value=0.45 Score=29.56 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+..++..
T Consensus 10 ~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 10 NSGKTTLIRKLINE 23 (140)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 68999999988753
No 391
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.01 E-value=0.42 Score=30.84 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+..+...
T Consensus 12 GsGKsTl~~~l~~~ 25 (186)
T PRK10078 12 GSGKDSLLAALRQR 25 (186)
T ss_pred CCCHHHHHHHHhcc
Confidence 89999999999653
No 392
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=87.01 E-value=0.44 Score=33.87 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=13.9
Q ss_pred CcchHHHHHHHHhCCC
Q psy13093 1 AVGKTCLLISYTTNAF 16 (111)
Q Consensus 1 gvGKssl~~~~~~~~f 16 (111)
|+||||++++++.+.-
T Consensus 11 GsGKTTlL~~lL~~~~ 26 (323)
T COG0523 11 GSGKTTLLNHLLANRD 26 (323)
T ss_pred CCCHHHHHHHHHhccC
Confidence 7999999999997644
No 393
>KOG1424|consensus
Probab=86.97 E-value=0.68 Score=34.95 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=28.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~ 49 (111)
+|||||.|+-+.+.+-.. -..|-|-.-. .++.+.. .+-+.||+|.
T Consensus 324 NVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 324 NVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred CCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 699999999999876532 2445554321 2333322 3567899996
No 394
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=86.96 E-value=0.45 Score=30.87 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.++..
T Consensus 9 gSGKTTla~~L~~ 21 (194)
T PF00485_consen 9 GSGKTTLAKRLAQ 21 (194)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998864
No 395
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=86.96 E-value=0.44 Score=31.82 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 9 GSGKTTla~~L~~ 21 (220)
T cd02025 9 AVGKSTTARVLQA 21 (220)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988764
No 396
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=86.95 E-value=0.44 Score=30.43 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 10 GsGKtT~~~~L~~ 22 (200)
T cd01672 10 GAGKTTLIELLAE 22 (200)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999874
No 397
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=86.58 E-value=0.69 Score=28.83 Aligned_cols=37 Identities=8% Similarity=-0.142 Sum_probs=24.4
Q ss_pred CCccEEecccccchhhhh---c----hhc--cCceEEcccccccCC
Q psy13093 74 GHPVRFPRGRKIRIMQMI---G----FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 74 ~~~~~~~~gnk~dl~~~~---~----~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+.+++.||+|+.... . +.. ....+.+||++|.+.
T Consensus 28 ~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi 73 (155)
T cd01849 28 KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGI 73 (155)
T ss_pred CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcCh
Confidence 356799999999993211 1 111 234577999999875
No 398
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=86.56 E-value=0.48 Score=31.10 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 16 GsGKSTl~~~l~~ 28 (207)
T TIGR00235 16 GSGKTTVARKIYE 28 (207)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
No 399
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=86.54 E-value=0.5 Score=31.28 Aligned_cols=33 Identities=6% Similarity=-0.076 Sum_probs=25.2
Q ss_pred EEecccccchhhhhch------------hccCceEEcccccccCC
Q psy13093 78 RFPRGRKIRIMQMIGF------------RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 78 ~~~~gnk~dl~~~~~~------------~~~~~~~e~SAk~~~n~ 110 (111)
.+++.||.||.-.++. ..+++++.+|+|+|++.
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 6789999999543333 12899999999999863
No 400
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.48 E-value=0.5 Score=29.59 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 8 GsGKSTla~~l~~~ 21 (163)
T TIGR01313 8 GSGKSTIASALAHR 21 (163)
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999987753
No 401
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.38 E-value=0.47 Score=30.68 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.+++.
T Consensus 16 gsGKTTLi~~li~ 28 (173)
T PRK10751 16 GTGKTTLLKKLIP 28 (173)
T ss_pred CChHHHHHHHHHH
Confidence 7999999998874
No 402
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=86.37 E-value=0.5 Score=32.02 Aligned_cols=50 Identities=14% Similarity=-0.012 Sum_probs=27.0
Q ss_pred EEEEEeCCCcccccccCcccc--------cCCceeeeehh---------------------hcCCccEEecccccchhh
Q psy13093 40 NLGLWDTAGQEDYDRLRPLSY--------PQTWSLRSFAL---------------------HAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 40 ~l~iwD~~G~~~~~~~~~~~~--------~~a~~~~~~~~---------------------~~~~~~~~~~gnk~dl~~ 89 (111)
...|+||+||.++...|+... ...-+++.+.+ ..-+-+.+.+-||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 788999999999877665433 22222333332 113456899999999954
No 403
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=86.37 E-value=0.51 Score=29.07 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||++...+...
T Consensus 9 GsGKST~a~~l~~~ 22 (150)
T cd02021 9 GSGKSTVGKALAER 22 (150)
T ss_pred CCCHHHHHHHHHhh
Confidence 79999999998764
No 404
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=86.20 E-value=0.48 Score=32.95 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 30 GsGKSs~l~~l~~ 42 (325)
T PF07693_consen 30 GSGKSSFLNMLKE 42 (325)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988764
No 405
>PRK06762 hypothetical protein; Provisional
Probab=86.19 E-value=0.53 Score=29.57 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+...
T Consensus 12 GsGKST~A~~L~~~ 25 (166)
T PRK06762 12 GSGKTTIAKQLQER 25 (166)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999988753
No 406
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=86.02 E-value=0.52 Score=33.03 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=23.2
Q ss_pred EEecccccchhhhh--ch-------hc---cCceEEcccccccCC
Q psy13093 78 RFPRGRKIRIMQMI--GF-------RD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 78 ~~~~gnk~dl~~~~--~~-------~~---~~~~~e~SAk~~~n~ 110 (111)
.+++-||+|+.... .. .. ....+.+||++|++.
T Consensus 233 DIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGl 277 (290)
T PRK10463 233 SLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGM 277 (290)
T ss_pred cEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCH
Confidence 57899999995311 11 11 567899999999874
No 407
>PRK06217 hypothetical protein; Validated
Probab=85.99 E-value=0.54 Score=30.23 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||+..++...
T Consensus 11 GsGKSTla~~L~~~ 24 (183)
T PRK06217 11 GSGTTTLGAALAER 24 (183)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999864
No 408
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=85.96 E-value=0.54 Score=30.90 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.++...
T Consensus 11 GsGKTTll~~l~~~ 24 (199)
T TIGR00101 11 GSGKTALIEALTRA 24 (199)
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999998854
No 409
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=85.95 E-value=0.52 Score=33.66 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+++++..
T Consensus 14 GaGKTTll~~ll~~ 27 (341)
T TIGR02475 14 GAGKTTLIRHLLQN 27 (341)
T ss_pred CCCHHHHHHHHHhc
Confidence 79999999999865
No 410
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=85.94 E-value=0.53 Score=31.85 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++.++...
T Consensus 53 G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 53 GAGKTTLIRNLLKR 66 (269)
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999998764
No 411
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=85.87 E-value=0.53 Score=29.97 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 13 GsGKsTl~~~l~~ 25 (188)
T TIGR01360 13 GSGKGTQCEKIVE 25 (188)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998874
No 412
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=85.86 E-value=0.56 Score=28.87 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.++...
T Consensus 9 GsGKstl~~~L~~~ 22 (137)
T cd00071 9 GVGKSTLLKRLLEE 22 (137)
T ss_pred CCCHHHHHHHHHhc
Confidence 79999999998853
No 413
>PRK10646 ADP-binding protein; Provisional
Probab=85.81 E-value=1.8 Score=27.47 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|++-++..
T Consensus 38 GaGKTtf~rgl~~~ 51 (153)
T PRK10646 38 GAGKTTFSRGFLQA 51 (153)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998764
No 414
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.67 E-value=0.54 Score=29.86 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+..+...
T Consensus 11 GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 11 GVGKSTLVKALLEE 24 (180)
T ss_pred CCCHHHHHHHHHcc
Confidence 79999999999863
No 415
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=85.66 E-value=0.58 Score=29.74 Aligned_cols=13 Identities=38% Similarity=0.417 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.++..
T Consensus 11 gsGKTTli~~L~~ 23 (159)
T cd03116 11 GSGKTTLLEKLIP 23 (159)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999885
No 416
>PRK06547 hypothetical protein; Provisional
Probab=85.54 E-value=0.59 Score=30.05 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 25 GsGKTt~a~~l~~~ 38 (172)
T PRK06547 25 GSGKTTLAGALAAR 38 (172)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998764
No 417
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=85.33 E-value=0.61 Score=29.56 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+...
T Consensus 5 GsGKSTla~~la~~ 18 (163)
T PRK11545 5 GSGKSAVASEVAHQ 18 (163)
T ss_pred CCcHHHHHHHHHHH
Confidence 89999999887643
No 418
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.24 E-value=0.62 Score=28.46 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 9 G~GKT~l~~~i~~~ 22 (165)
T cd01120 9 GSGKTTLALQLALN 22 (165)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998753
No 419
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=85.22 E-value=0.63 Score=29.82 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 6 GsGKtT~~~~L~~ 18 (186)
T PF02223_consen 6 GSGKTTQIRLLAE 18 (186)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998864
No 420
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=85.16 E-value=2.7 Score=31.38 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=28.2
Q ss_pred cchHHHHHHHHhC-----------------CCCCC----CCCceeeeeE----EEEEE-CCeeEEEEEEeCCC
Q psy13093 2 VGKTCLLISYTTN-----------------AFPGE----YIPTVFDNYS----ANVMV-DGKPINLGLWDTAG 48 (111)
Q Consensus 2 vGKssl~~~~~~~-----------------~f~~~----~~~t~~~~~~----~~i~~-~~~~~~l~iwD~~G 48 (111)
+|||||++||..- ..++. ...|..-.|. -.+.+ ++-.+++.+-||-|
T Consensus 28 TGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiDCVG 100 (492)
T PF09547_consen 28 TGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLIDCVG 100 (492)
T ss_pred cCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEeecc
Confidence 6999999999653 11111 1122222331 24445 46789999999876
No 421
>PRK05480 uridine/cytidine kinase; Provisional
Probab=85.15 E-value=0.62 Score=30.51 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 16 GsGKTTl~~~l~~ 28 (209)
T PRK05480 16 GSGKTTVASTIYE 28 (209)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988775
No 422
>PRK13975 thymidylate kinase; Provisional
Probab=85.14 E-value=0.63 Score=30.00 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
||||||++..+..
T Consensus 12 GsGKtT~~~~L~~ 24 (196)
T PRK13975 12 GSGKTTQAKLLAE 24 (196)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 423
>PRK13796 GTPase YqeH; Provisional
Probab=85.12 E-value=0.54 Score=33.86 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=25.3
Q ss_pred CCccEEecccccchhh-------hhch----hc--cC---ceEEcccccccCCC
Q psy13093 74 GHPVRFPRGRKIRIMQ-------MIGF----RD--RL---LWGSKQAREEKNEK 111 (111)
Q Consensus 74 ~~~~~~~~gnk~dl~~-------~~~~----~~--~~---~~~e~SAk~~~n~~ 111 (111)
.+.++++++||+|+.. .... .. ++ ..+.+||++|+|++
T Consensus 95 ~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~ 148 (365)
T PRK13796 95 GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGID 148 (365)
T ss_pred CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHH
Confidence 3556889999999942 1111 11 33 46899999999863
No 424
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=85.02 E-value=0.65 Score=29.60 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+...
T Consensus 12 gsGKst~a~~l~~~ 25 (175)
T cd00227 12 SAGKSSIARALQSV 25 (175)
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999988764
No 425
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=84.81 E-value=0.47 Score=32.15 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+.+
T Consensus 6 GSGKTT~~~~~~~ 18 (238)
T PF03029_consen 6 GSGKTTFCKGLSE 18 (238)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 426
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=84.69 E-value=0.67 Score=29.85 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.++...
T Consensus 9 gsGKttla~~l~~~ 22 (179)
T cd02028 9 GSGKTTFAKKLSNQ 22 (179)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999888753
No 427
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.39 E-value=0.73 Score=29.10 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++.+++.
T Consensus 9 gsGKTtl~~~l~~ 21 (155)
T TIGR00176 9 NSGKTTLIERLVK 21 (155)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888875
No 428
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=84.33 E-value=2.5 Score=26.74 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++-++.+
T Consensus 35 GAGKTtf~rgi~~~ 48 (149)
T COG0802 35 GAGKTTLVRGIAKG 48 (149)
T ss_pred cCChHHHHHHHHHH
Confidence 79999999988765
No 429
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=84.29 E-value=0.65 Score=31.99 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|||||||++.+..
T Consensus 38 G~GKSTLLk~l~g 50 (258)
T COG1120 38 GSGKSTLLKCLAG 50 (258)
T ss_pred CCCHHHHHHHHhc
Confidence 8999999998875
No 430
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=84.27 E-value=0.7 Score=29.38 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.+|+..
T Consensus 9 G~GKT~l~~~~~~~ 22 (187)
T cd01124 9 GTGKTTFALQFLYA 22 (187)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999754
No 431
>PRK03839 putative kinase; Provisional
Probab=84.26 E-value=0.72 Score=29.42 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||+..++...
T Consensus 10 GsGKsT~~~~La~~ 23 (180)
T PRK03839 10 GVGKTTVSKLLAEK 23 (180)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988764
No 432
>PRK00698 tmk thymidylate kinase; Validated
Probab=84.24 E-value=0.72 Score=29.81 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 13 gsGKsT~~~~L~~ 25 (205)
T PRK00698 13 GAGKSTQIELLKE 25 (205)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 433
>PRK06696 uridine kinase; Validated
Probab=83.85 E-value=0.75 Score=30.58 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 32 gsGKSTlA~~L~~ 44 (223)
T PRK06696 32 ASGKTTFADELAE 44 (223)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
No 434
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=83.79 E-value=0.78 Score=36.19 Aligned_cols=49 Identities=20% Similarity=0.090 Sum_probs=30.1
Q ss_pred CcchHHHHHHHHhCCCCCCC-----CCceeeeeEEEEEECCeeEEEEEEeCCCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEY-----IPTVFDNYSANVMVDGKPINLGLWDTAGQ 49 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~-----~~t~~~~~~~~i~~~~~~~~l~iwD~~G~ 49 (111)
++|||||++.+.+-.|...- ..|-|.-..+........-.+-++|+-|.
T Consensus 5 ssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~ 58 (742)
T PF05879_consen 5 SSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGT 58 (742)
T ss_pred CCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCC
Confidence 58999999999999886532 24445433221111122346678998664
No 435
>PRK14738 gmk guanylate kinase; Provisional
Probab=83.77 E-value=0.75 Score=30.28 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||||+.++...
T Consensus 23 G~GK~tl~~~L~~~ 36 (206)
T PRK14738 23 GVGKDAVLARMRER 36 (206)
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999998753
No 436
>PRK04040 adenylate kinase; Provisional
Probab=83.74 E-value=0.78 Score=29.88 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 12 G~GKtt~~~~l~~~ 25 (188)
T PRK04040 12 GVGKTTVLNKALEK 25 (188)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988653
No 437
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=83.66 E-value=0.69 Score=29.60 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
++|||||+.+.+.
T Consensus 12 ~SGKTTLie~lv~ 24 (161)
T COG1763 12 NSGKTTLIEKLVR 24 (161)
T ss_pred CCChhhHHHHHHH
Confidence 6899999999864
No 438
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.48 E-value=0.63 Score=30.05 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=10.3
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||||++-..
T Consensus 31 G~GKSTLl~~il 42 (176)
T cd03238 31 GSGKSTLVNEGL 42 (176)
T ss_pred CCCHHHHHHHHh
Confidence 799999998764
No 439
>KOG4235|consensus
Probab=83.21 E-value=0.93 Score=30.31 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.5
Q ss_pred CcchHHHHHHHHhCCCCCC
Q psy13093 1 AVGKTCLLISYTTNAFPGE 19 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~ 19 (111)
+||||+++++|.+.....-
T Consensus 32 a~GKsTfl~~~~~~t~~~~ 50 (244)
T KOG4235|consen 32 AVGKSTFLNFFLNKTYEEW 50 (244)
T ss_pred ccchHHHHHHHHhccCccc
Confidence 6899999999998766443
No 440
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=83.21 E-value=0.8 Score=31.78 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.+++.
T Consensus 11 gSGKTTLi~~Li~ 23 (274)
T PRK14493 11 ATGKTTLVERLVD 23 (274)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998874
No 441
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=83.19 E-value=0.78 Score=31.25 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 29 G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 29 GIGKTTLARQVARD 42 (287)
T ss_dssp TSSHHHHHHHHHCH
T ss_pred cCCcceeeeecccc
Confidence 89999999998854
No 442
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=82.98 E-value=1.2 Score=30.84 Aligned_cols=36 Identities=8% Similarity=-0.040 Sum_probs=23.8
Q ss_pred CccEEecccccchhhhh---chh----c-cCceEEcccccccCC
Q psy13093 75 HPVRFPRGRKIRIMQMI---GFR----D-RLLWGSKQAREEKNE 110 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~~~---~~~----~-~~~~~e~SAk~~~n~ 110 (111)
+.+.+++.||+|+.... ... + +...+.+||+++.+.
T Consensus 51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi 94 (287)
T PRK09563 51 NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGV 94 (287)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccH
Confidence 45689999999994221 111 1 345678899988764
No 443
>PRK07667 uridine kinase; Provisional
Probab=82.89 E-value=0.89 Score=29.58 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 27 gsGKStla~~L~~ 39 (193)
T PRK07667 27 RSGKTTFVANLKE 39 (193)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888865
No 444
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=82.89 E-value=0.87 Score=30.39 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 43 GsGKTTl~~~L~~ 55 (229)
T PRK09270 43 GAGKSTLAEFLEA 55 (229)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988774
No 445
>PTZ00301 uridine kinase; Provisional
Probab=82.87 E-value=0.87 Score=30.29 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=10.1
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||||+..+.
T Consensus 13 gSGKTTla~~l~ 24 (210)
T PTZ00301 13 GSGKSSLSTNIV 24 (210)
T ss_pred cCCHHHHHHHHH
Confidence 799999997664
No 446
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=82.87 E-value=0.88 Score=29.27 Aligned_cols=13 Identities=23% Similarity=0.128 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 13 GsGKsT~~~~L~~ 25 (195)
T TIGR00041 13 GAGKTTQANLLKK 25 (195)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998874
No 447
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=82.85 E-value=0.82 Score=31.31 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|||||||++-...
T Consensus 39 GcGKSTLLriiAG 51 (248)
T COG1116 39 GCGKSTLLRLIAG 51 (248)
T ss_pred CCCHHHHHHHHhC
Confidence 8999999888765
No 448
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=82.84 E-value=0.83 Score=30.12 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=13.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 8 GsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 8 GSGKSTLIKKLLKD 21 (234)
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999999987
No 449
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=82.83 E-value=0.8 Score=29.66 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=12.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++.++...
T Consensus 10 GaGK~T~A~~La~~ 23 (178)
T COG0563 10 GAGKSTLAKKLAKK 23 (178)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999876
No 450
>PRK00300 gmk guanylate kinase; Provisional
Probab=82.73 E-value=0.89 Score=29.53 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 15 GsGKstl~~~l~~~ 28 (205)
T PRK00300 15 GAGKSTLVKALLER 28 (205)
T ss_pred CCCHHHHHHHHHhh
Confidence 79999999988763
No 451
>PRK05541 adenylylsulfate kinase; Provisional
Probab=82.65 E-value=0.93 Score=28.80 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 17 GsGKst~a~~l~~ 29 (176)
T PRK05541 17 GSGKTTIAKALYE 29 (176)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999987753
No 452
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=82.55 E-value=1.9 Score=32.42 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=17.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY 28 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~ 28 (111)
|+|||||++-+.. -|.|+.|.-+
T Consensus 40 GAGKSTLm~iL~G-----~~~P~~GeI~ 62 (501)
T COG3845 40 GAGKSTLMKILFG-----LYQPDSGEIR 62 (501)
T ss_pred CCCHHHHHHHHhC-----cccCCcceEE
Confidence 7899999988764 4677777544
No 453
>PRK07933 thymidylate kinase; Validated
Probab=82.44 E-value=0.93 Score=30.08 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 10 GsGKST~~~~L~~ 22 (213)
T PRK07933 10 GAGKRTLTEALRA 22 (213)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999888764
No 454
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=82.43 E-value=1 Score=24.87 Aligned_cols=56 Identities=20% Similarity=0.071 Sum_probs=29.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccccc-CcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL-RPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~-~~~~~~~a~~~~~~ 69 (111)
|+|||+++..+...--...+ +...++ .+.|.|+++......+ .......++.++.+
T Consensus 9 G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v 65 (99)
T cd01983 9 GVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIV 65 (99)
T ss_pred CCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence 79999998777642111111 122233 6778898876543321 12333345544443
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=82.41 E-value=0.89 Score=27.09 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.7
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||+|+.-+.
T Consensus 25 GsGKSTLl~~l~ 36 (107)
T cd00820 25 GIGKTELALELI 36 (107)
T ss_pred CCCHHHHHHHhh
Confidence 799999999876
No 456
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=82.41 E-value=0.95 Score=29.60 Aligned_cols=14 Identities=29% Similarity=0.147 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 9 gsGKTtla~~l~~~ 22 (187)
T cd02024 9 NSGKTTLAKLLQRI 22 (187)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998764
No 457
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=82.31 E-value=0.98 Score=28.24 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 9 GsGKTt~~~~l~~ 21 (148)
T cd03114 9 GAGKSTLIDALIT 21 (148)
T ss_pred CCcHHHHHHHHHH
Confidence 7999999888864
No 458
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=82.27 E-value=0.88 Score=29.66 Aligned_cols=14 Identities=29% Similarity=0.188 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.-+..-
T Consensus 36 GsGKSTLl~~l~Gl 49 (205)
T cd03226 36 GAGKTTLAKILAGL 49 (205)
T ss_pred CCCHHHHHHHHhcC
Confidence 79999999988753
No 459
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=82.18 E-value=0.9 Score=29.84 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 40 GsGKSTLl~~i~G 52 (218)
T cd03255 40 GSGKSTLLNILGG 52 (218)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999998875
No 460
>PRK14737 gmk guanylate kinase; Provisional
Probab=82.06 E-value=0.99 Score=29.36 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||+|+.++...
T Consensus 14 G~GK~tl~~~l~~~ 27 (186)
T PRK14737 14 GGGKSTIIQALLEE 27 (186)
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999999864
No 461
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=81.93 E-value=0.81 Score=28.32 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 9 G~GKT~la~~lA~ 21 (131)
T PF07726_consen 9 GVGKTTLAKALAR 21 (131)
T ss_dssp -HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 7999999999875
No 462
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.88 E-value=0.94 Score=29.58 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 37 GsGKSTLl~~l~G 49 (211)
T cd03225 37 GSGKSTLLRLLNG 49 (211)
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988875
No 463
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.86 E-value=0.95 Score=29.58 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.-+..-
T Consensus 36 GsGKSTLl~~l~G~ 49 (210)
T cd03269 36 GAGKTTTIRMILGI 49 (210)
T ss_pred CCCHHHHHHHHhCC
Confidence 79999999988863
No 464
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=81.80 E-value=0.94 Score=32.63 Aligned_cols=14 Identities=36% Similarity=0.292 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
||||||++.-...-
T Consensus 41 GcGKTTlLR~IAGf 54 (352)
T COG3842 41 GCGKTTLLRMIAGF 54 (352)
T ss_pred CCCHHHHHHHHhCC
Confidence 89999998888753
No 465
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=81.79 E-value=1.1 Score=27.98 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 9 GsGKSTla~~L~~~ 22 (149)
T cd02027 9 GSGKSTIARALEEK 22 (149)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999887753
No 466
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=81.68 E-value=0.8 Score=30.94 Aligned_cols=14 Identities=29% Similarity=0.197 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++-...-
T Consensus 41 GSGKSTLLniig~l 54 (226)
T COG1136 41 GSGKSTLLNLLGGL 54 (226)
T ss_pred CCCHHHHHHHHhcc
Confidence 89999999988753
No 467
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=81.66 E-value=1 Score=29.81 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|..+|+..
T Consensus 29 GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 29 GSGKTTLALQFLYN 42 (226)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 79999999999853
No 468
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=81.64 E-value=0.97 Score=29.09 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 28 GsGKSTLl~~i~G 40 (190)
T TIGR01166 28 GAGKSTLLLHLNG 40 (190)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999987764
No 469
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=81.44 E-value=1.1 Score=29.74 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.+.+..
T Consensus 23 GSGKTaLie~~~~~ 36 (202)
T COG0378 23 GSGKTALIEKTLRA 36 (202)
T ss_pred CcCHHHHHHHHHHH
Confidence 79999999997753
No 470
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=81.35 E-value=1.9 Score=32.56 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=15.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCcee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVF 25 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~ 25 (111)
|+|||||++-+.. -|.|+-|
T Consensus 44 GAGKSTLmKiLsG-----v~~p~~G 63 (500)
T COG1129 44 GAGKSTLMKILSG-----VYPPDSG 63 (500)
T ss_pred CCCHHHHHHHHhC-----cccCCCc
Confidence 7999999998875 3456666
No 471
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=81.29 E-value=1.1 Score=31.04 Aligned_cols=33 Identities=12% Similarity=-0.263 Sum_probs=18.8
Q ss_pred EEecccccchhhhhchhc----------------cCceEEcccccccCC
Q psy13093 78 RFPRGRKIRIMQMIGFRD----------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 78 ~~~~gnk~dl~~~~~~~~----------------~~~~~e~SAk~~~n~ 110 (111)
.+.+.||.|...+..... .-+-+.|||.+|.++
T Consensus 170 Di~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi 218 (266)
T PF03308_consen 170 DIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI 218 (266)
T ss_dssp SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH
T ss_pred cEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH
Confidence 568889999843222111 245689999988763
No 472
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=81.28 E-value=1 Score=29.56 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.+++..
T Consensus 29 GsGKT~l~~~~a~~ 42 (218)
T cd01394 29 GTGKTNIAIQLAVE 42 (218)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999853
No 473
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=81.12 E-value=1 Score=29.58 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 39 GsGKSTLl~~l~G 51 (216)
T TIGR00960 39 GAGKSTFLKLILG 51 (216)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999988875
No 474
>PRK13695 putative NTPase; Provisional
Probab=81.05 E-value=1.2 Score=28.37 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 10 G~GKTTll~~i~~ 22 (174)
T PRK13695 10 GVGKTTLVLKIAE 22 (174)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998653
No 475
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=81.02 E-value=1.1 Score=28.65 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 9 gsGKst~~~~l~~ 21 (179)
T cd02022 9 GSGKSTVAKLLKE 21 (179)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999986
No 476
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.99 E-value=1 Score=29.64 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 40 GsGKSTLl~~l~G 52 (220)
T cd03293 40 GCGKSTLLRIIAG 52 (220)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999988775
No 477
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.91 E-value=1.1 Score=29.37 Aligned_cols=13 Identities=38% Similarity=0.465 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 35 GsGKSTLl~~l~G 47 (211)
T cd03264 35 GAGKTTLMRILAT 47 (211)
T ss_pred CCCHHHHHHHHhC
Confidence 8999999988875
No 478
>PHA00729 NTP-binding motif containing protein
Probab=80.85 E-value=1.2 Score=30.18 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||+|+..+...
T Consensus 27 GvGKT~LA~aLa~~ 40 (226)
T PHA00729 27 GSGKTTYALKVARD 40 (226)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998753
No 479
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=80.79 E-value=1.2 Score=28.72 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.1
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
||||||+..-+.
T Consensus 9 GCGKTTva~aL~ 20 (168)
T PF08303_consen 9 GCGKTTVALALS 20 (168)
T ss_pred CcCHHHHHHHHH
Confidence 899999977765
No 480
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=80.71 E-value=1.2 Score=27.87 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=10.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
||||||+-..+..
T Consensus 2 GsGKStvg~~lA~ 14 (158)
T PF01202_consen 2 GSGKSTVGKLLAK 14 (158)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999999777664
No 481
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=80.68 E-value=1.1 Score=29.00 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 35 GsGKSTLl~~l~G 47 (177)
T cd03222 35 GTGKTTAVKILAG 47 (177)
T ss_pred CChHHHHHHHHHc
Confidence 7999999998775
No 482
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.66 E-value=1.2 Score=30.90 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 9 GsGKSTl~~~L~~ 21 (273)
T cd02026 9 GCGKSTFLRRLTS 21 (273)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
No 483
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=80.66 E-value=1.1 Score=29.29 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 37 GsGKSTLl~~l~G 49 (214)
T cd03292 37 GAGKSTLLKLIYK 49 (214)
T ss_pred CCCHHHHHHHHhc
Confidence 7999999988875
No 484
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=80.61 E-value=1.2 Score=29.07 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=11.3
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
||||||+..++.
T Consensus 10 GvGKTT~~~~L~ 21 (180)
T COG1936 10 GVGKTTVCKLLR 21 (180)
T ss_pred CCchHHHHHHHH
Confidence 899999999988
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.57 E-value=1.1 Score=29.86 Aligned_cols=13 Identities=31% Similarity=0.309 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 36 GsGKSTLl~~l~G 48 (235)
T cd03261 36 GSGKSTLLRLIVG 48 (235)
T ss_pred CCCHHHHHHHHhC
Confidence 8999999998875
No 486
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=80.49 E-value=1.1 Score=29.25 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.-...-
T Consensus 36 GsGKSTLl~~l~G~ 49 (213)
T cd03301 36 GCGKTTTLRMIAGL 49 (213)
T ss_pred CCCHHHHHHHHhCC
Confidence 79999999887753
No 487
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.46 E-value=1.1 Score=29.04 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.-+..-
T Consensus 34 GsGKSTLl~~l~G~ 47 (206)
T TIGR03608 34 GSGKSTLLNIIGLL 47 (206)
T ss_pred CCCHHHHHHHHhcC
Confidence 79999999988753
No 488
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.45 E-value=1.1 Score=29.47 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 36 GsGKSTLl~~i~G 48 (220)
T cd03265 36 GAGKTTTIKMLTT 48 (220)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999998775
No 489
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=80.44 E-value=1.1 Score=29.22 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.-+..-
T Consensus 36 GsGKSTLl~~l~G~ 49 (213)
T cd03262 36 GSGKSTLLRCINLL 49 (213)
T ss_pred CCCHHHHHHHHhCC
Confidence 79999999988753
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.41 E-value=1.2 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 36 GsGKSTLl~~l~G 48 (178)
T cd03229 36 GSGKSTLLRCIAG 48 (178)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999998874
No 491
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=80.34 E-value=1.1 Score=29.36 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 41 GsGKSTLl~~l~G 53 (218)
T cd03266 41 GAGKTTTLRMLAG 53 (218)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999988775
No 492
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.25 E-value=1.1 Score=29.69 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+.-+..-
T Consensus 41 GsGKSTLl~~l~G~ 54 (233)
T cd03258 41 GAGKSTLIRCINGL 54 (233)
T ss_pred CCCHHHHHHHHhCC
Confidence 79999999988753
No 493
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=80.20 E-value=1.1 Score=29.86 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 38 GsGKSTLl~~l~G 50 (243)
T TIGR02315 38 GAGKSTLLRCINR 50 (243)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999987764
No 494
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.19 E-value=1.2 Score=29.23 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 36 GsGKSTLl~~l~G 48 (213)
T cd03259 36 GCGKTTLLRLIAG 48 (213)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999988775
No 495
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=80.12 E-value=1.2 Score=29.00 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|..+++.
T Consensus 22 GsGKT~l~~~~~~ 34 (209)
T TIGR02237 22 GSGKTNICMILAV 34 (209)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999874
No 496
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.07 E-value=1.4 Score=30.44 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=13.0
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|+|||+++..++..-
T Consensus 43 GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 43 GTGKTSLIQNFLSSL 57 (272)
T ss_dssp TSSHHHHHHHHHHCS
T ss_pred CCchhHHHHhhhccC
Confidence 899999999988653
No 497
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=80.02 E-value=1.3 Score=28.97 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+...
T Consensus 11 GSGKTTll~~ll~~ 24 (198)
T cd01131 11 GSGKSTTLAAMIDY 24 (198)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999877653
No 498
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=79.98 E-value=1.1 Score=30.37 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=9.5
Q ss_pred CcchHHHHHHH
Q psy13093 1 AVGKTCLLISY 11 (111)
Q Consensus 1 gvGKssl~~~~ 11 (111)
|||||+|+..+
T Consensus 43 GcGKST~LR~l 53 (253)
T COG1117 43 GCGKSTLLRCL 53 (253)
T ss_pred CcCHHHHHHHH
Confidence 89999997765
No 499
>KOG3347|consensus
Probab=79.84 E-value=1.1 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||++..|+..
T Consensus 17 G~GKstl~~~lae 29 (176)
T KOG3347|consen 17 GTGKSTLAERLAE 29 (176)
T ss_pred CCCchhHHHHHHH
Confidence 8999999999984
No 500
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=79.81 E-value=1.2 Score=29.13 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 38 GsGKSTLl~~i~G 50 (214)
T TIGR02673 38 GAGKTTLLKLLYG 50 (214)
T ss_pred CCCHHHHHHHHhC
Confidence 7999999987764
Done!