Query psy13093
Match_columns 111
No_of_seqs 135 out of 1112
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 19:22:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9E-33 3.1E-37 182.1 8.0 110 1-110 23-163 (216)
2 3q3j_B RHO-related GTP-binding 99.9 4.9E-26 1.7E-30 149.0 9.4 109 1-109 37-188 (214)
3 3reg_A RHO-like small GTPase; 99.9 4E-25 1.4E-29 142.0 11.6 110 1-110 33-175 (194)
4 3t5g_A GTP-binding protein RHE 99.9 5.9E-25 2E-29 139.5 9.7 110 1-110 16-156 (181)
5 2j0v_A RAC-like GTP-binding pr 99.9 9.9E-25 3.4E-29 141.9 10.3 110 1-110 19-167 (212)
6 2q3h_A RAS homolog gene family 99.9 1.6E-24 5.3E-29 139.8 10.8 110 1-110 30-182 (201)
7 2atx_A Small GTP binding prote 99.9 8.9E-25 3.1E-29 140.3 9.5 110 1-110 28-180 (194)
8 1m7b_A RND3/RHOE small GTP-bin 99.9 1E-24 3.6E-29 139.2 9.4 110 1-110 17-170 (184)
9 2ew1_A RAS-related protein RAB 99.9 1.6E-24 5.6E-29 140.8 10.4 110 1-110 36-176 (201)
10 3c5c_A RAS-like protein 12; GD 99.9 1.9E-24 6.6E-29 138.5 9.6 109 1-110 31-173 (187)
11 1gwn_A RHO-related GTP-binding 99.9 2.1E-24 7.1E-29 140.6 9.1 110 1-110 38-191 (205)
12 1mh1_A RAC1; GTP-binding, GTPa 99.9 5.7E-24 1.9E-28 135.1 10.7 110 1-110 15-167 (186)
13 2hup_A RAS-related protein RAB 99.9 1.5E-24 5.1E-29 140.5 8.0 110 1-110 39-180 (201)
14 2j1l_A RHO-related GTP-binding 99.9 2.2E-24 7.4E-29 141.0 8.8 110 1-110 44-196 (214)
15 2fn4_A P23, RAS-related protei 99.9 3.2E-24 1.1E-28 135.5 9.2 110 1-110 19-159 (181)
16 3oes_A GTPase rhebl1; small GT 99.9 2.3E-24 7.7E-29 139.4 8.6 110 1-110 34-174 (201)
17 2gco_A H9, RHO-related GTP-bin 99.9 5.8E-24 2E-28 137.6 10.4 110 1-110 35-187 (201)
18 1z08_A RAS-related protein RAB 99.9 7.3E-24 2.5E-28 132.9 10.3 110 1-110 16-156 (170)
19 1c1y_A RAS-related protein RAP 99.9 2.3E-24 7.9E-29 134.7 7.8 110 1-110 13-154 (167)
20 3tw8_B RAS-related protein RAB 99.9 8.2E-24 2.8E-28 133.7 10.4 110 1-110 19-158 (181)
21 3kkq_A RAS-related protein M-R 99.9 3.8E-24 1.3E-28 136.0 8.7 110 1-110 28-169 (183)
22 2fu5_C RAS-related protein RAB 99.9 9.3E-25 3.2E-29 138.8 5.8 110 1-110 18-158 (183)
23 2a5j_A RAS-related protein RAB 99.9 6E-24 2E-28 136.3 9.3 110 1-110 31-171 (191)
24 1z2a_A RAS-related protein RAB 99.9 1.4E-23 4.6E-28 131.3 10.7 110 1-110 15-154 (168)
25 2bme_A RAB4A, RAS-related prot 99.9 1.1E-23 3.8E-28 134.0 10.3 110 1-110 20-160 (186)
26 4gzl_A RAS-related C3 botulinu 99.9 1.1E-23 3.8E-28 136.7 10.4 110 1-110 40-192 (204)
27 2bcg_Y Protein YP2, GTP-bindin 99.9 1.3E-23 4.6E-28 136.0 10.7 110 1-110 18-158 (206)
28 1r2q_A RAS-related protein RAB 99.9 1.1E-23 3.8E-28 131.8 10.0 110 1-110 16-156 (170)
29 3cpj_B GTP-binding protein YPT 99.9 1.3E-23 4.4E-28 137.9 10.6 110 1-110 23-163 (223)
30 3t1o_A Gliding protein MGLA; G 99.9 6.7E-25 2.3E-29 140.4 4.3 109 1-110 24-179 (198)
31 3bwd_D RAC-like GTP-binding pr 99.9 1.2E-24 4.1E-29 137.9 5.3 110 1-110 18-168 (182)
32 2gf9_A RAS-related protein RAB 99.9 1.8E-23 6.1E-28 133.8 10.8 110 1-110 32-172 (189)
33 2hxs_A RAB-26, RAS-related pro 99.9 2E-24 6.8E-29 136.5 5.9 110 1-110 16-160 (178)
34 1ek0_A Protein (GTP-binding pr 99.9 1.5E-23 5E-28 131.2 9.8 110 1-110 13-156 (170)
35 1u8z_A RAS-related protein RAL 99.9 6.8E-24 2.3E-28 132.3 8.2 110 1-110 14-154 (168)
36 2iwr_A Centaurin gamma 1; ANK 99.9 5.9E-24 2E-28 134.6 7.7 104 1-110 17-156 (178)
37 2fv8_A H6, RHO-related GTP-bin 99.9 2.7E-23 9.2E-28 135.0 11.0 110 1-110 35-187 (207)
38 1z0j_A RAB-22, RAS-related pro 99.9 2.4E-23 8.2E-28 130.3 10.3 110 1-110 16-156 (170)
39 1kao_A RAP2A; GTP-binding prot 99.9 5.3E-24 1.8E-28 132.7 7.3 110 1-110 13-153 (167)
40 1zbd_A Rabphilin-3A; G protein 99.9 1.6E-23 5.6E-28 135.2 9.7 110 1-110 18-158 (203)
41 3ihw_A Centg3; RAS, centaurin, 99.9 9.5E-24 3.2E-28 135.2 8.4 104 1-110 30-167 (184)
42 3tkl_A RAS-related protein RAB 99.9 1.4E-23 4.9E-28 134.4 9.2 110 1-110 26-166 (196)
43 2y8e_A RAB-protein 6, GH09086P 99.9 2E-23 7E-28 131.6 9.7 110 1-110 24-164 (179)
44 2efe_B Small GTP-binding prote 99.9 2.7E-23 9.2E-28 131.5 10.1 110 1-110 22-162 (181)
45 4dsu_A GTPase KRAS, isoform 2B 99.9 1.2E-23 4.2E-28 133.8 8.2 110 1-110 14-153 (189)
46 2fg5_A RAB-22B, RAS-related pr 99.9 3E-23 1E-27 133.3 10.1 110 1-110 33-173 (192)
47 1z0f_A RAB14, member RAS oncog 99.9 1.7E-23 5.8E-28 132.0 8.8 110 1-110 25-165 (179)
48 2o52_A RAS-related protein RAB 99.9 1.2E-23 4.2E-28 136.1 8.1 110 1-110 35-175 (200)
49 2erx_A GTP-binding protein DI- 99.9 1.6E-23 5.3E-28 131.3 8.3 110 1-110 13-154 (172)
50 2bov_A RAla, RAS-related prote 99.9 1.3E-23 4.5E-28 135.5 8.2 110 1-110 24-164 (206)
51 1z06_A RAS-related protein RAB 99.9 1.3E-23 4.6E-28 134.4 8.1 110 1-110 30-175 (189)
52 2oil_A CATX-8, RAS-related pro 99.9 3.3E-23 1.1E-27 132.8 9.8 110 1-110 35-175 (193)
53 2g3y_A GTP-binding protein GEM 99.9 1.5E-23 5E-28 137.6 8.2 109 1-110 47-190 (211)
54 2p5s_A RAS and EF-hand domain 99.9 8.2E-24 2.8E-28 136.6 6.8 110 1-110 38-184 (199)
55 1g16_A RAS-related protein SEC 99.9 1.8E-23 6.1E-28 130.9 8.1 110 1-110 13-152 (170)
56 1x3s_A RAS-related protein RAB 99.9 3.9E-23 1.3E-27 132.2 9.8 110 1-110 25-165 (195)
57 2g6b_A RAS-related protein RAB 99.9 5.3E-23 1.8E-27 130.1 10.2 110 1-110 20-161 (180)
58 2a9k_A RAS-related protein RAL 99.9 2.4E-23 8.1E-28 132.1 8.5 110 1-110 28-168 (187)
59 3q72_A GTP-binding protein RAD 99.9 2E-23 7E-28 130.5 7.9 109 1-110 12-151 (166)
60 3gj0_A GTP-binding nuclear pro 99.9 6.2E-24 2.1E-28 139.1 5.7 111 1-111 25-163 (221)
61 1wms_A RAB-9, RAB9, RAS-relate 99.9 4.6E-23 1.6E-27 130.1 9.5 110 1-110 17-161 (177)
62 2il1_A RAB12; G-protein, GDP, 99.9 1E-23 3.5E-28 135.5 6.3 110 1-110 36-177 (192)
63 2atv_A RERG, RAS-like estrogen 99.9 3.7E-23 1.3E-27 133.1 8.7 109 1-110 38-178 (196)
64 1f6b_A SAR1; gtpases, N-termin 99.9 3E-23 1E-27 134.2 7.7 106 1-110 35-186 (198)
65 3dz8_A RAS-related protein RAB 99.9 3.8E-24 1.3E-28 137.2 3.3 110 1-110 33-173 (191)
66 3cph_A RAS-related protein SEC 99.9 1.6E-22 5.6E-27 131.1 11.0 110 1-110 30-169 (213)
67 4bas_A ADP-ribosylation factor 99.9 3.1E-23 1E-27 133.2 7.3 107 1-110 27-176 (199)
68 3bc1_A RAS-related protein RAB 99.9 5.6E-23 1.9E-27 131.0 8.4 110 1-110 21-172 (195)
69 1vg8_A RAS-related protein RAB 99.9 1.1E-22 3.9E-27 131.3 9.8 110 1-110 18-162 (207)
70 3con_A GTPase NRAS; structural 99.9 2.5E-22 8.4E-27 128.3 11.1 110 1-110 31-170 (190)
71 1ky3_A GTP-binding protein YPT 99.9 6.3E-23 2.2E-27 129.7 8.2 110 1-110 18-165 (182)
72 3q85_A GTP-binding protein REM 99.9 5.3E-23 1.8E-27 128.9 7.7 110 1-110 12-154 (169)
73 2gf0_A GTP-binding protein DI- 99.9 5.5E-23 1.9E-27 132.0 7.5 110 1-110 18-158 (199)
74 1m2o_B GTP-binding protein SAR 99.9 2.4E-22 8.3E-27 129.1 10.5 106 1-110 33-179 (190)
75 1zd9_A ADP-ribosylation factor 99.9 3.1E-23 1.1E-27 132.8 6.2 107 1-110 32-172 (188)
76 2f7s_A C25KG, RAS-related prot 99.9 3E-23 1E-27 135.3 6.0 110 1-110 35-186 (217)
77 3cbq_A GTP-binding protein REM 99.9 1.9E-23 6.3E-28 135.0 4.8 110 1-110 33-175 (195)
78 1r8s_A ADP-ribosylation factor 99.9 4.1E-23 1.4E-27 128.9 6.1 106 1-110 10-149 (164)
79 2yc2_C IFT27, small RAB-relate 99.9 3.6E-23 1.2E-27 133.5 5.8 111 1-111 30-180 (208)
80 2wkq_A NPH1-1, RAS-related C3 99.9 3E-22 1E-26 137.4 10.5 110 1-110 165-317 (332)
81 3th5_A RAS-related C3 botulinu 99.8 3E-24 1E-28 139.0 0.0 111 1-111 40-193 (204)
82 2cjw_A GTP-binding protein GEM 99.9 1.6E-22 5.4E-27 130.3 8.1 109 1-110 16-159 (192)
83 3r7w_B Gtpase2, GTP-binding pr 99.9 2.2E-23 7.6E-28 144.3 4.3 105 1-110 9-161 (331)
84 2ce2_X GTPase HRAS; signaling 99.9 1.9E-22 6.4E-27 125.4 7.8 110 1-110 13-152 (166)
85 2h17_A ADP-ribosylation factor 99.9 1.9E-22 6.6E-27 128.3 8.0 106 1-110 31-170 (181)
86 2nzj_A GTP-binding protein REM 99.9 1.7E-22 5.9E-27 127.1 7.7 109 1-110 14-156 (175)
87 3l0i_B RAS-related protein RAB 99.9 1E-23 3.5E-28 136.1 1.2 110 1-110 43-183 (199)
88 3clv_A RAB5 protein, putative; 99.9 3.8E-22 1.3E-26 127.8 8.5 110 1-110 17-191 (208)
89 1upt_A ARL1, ADP-ribosylation 99.9 9.7E-22 3.3E-26 123.2 9.8 106 1-110 17-156 (171)
90 2fh5_B SR-beta, signal recogni 99.9 1.3E-22 4.3E-27 132.1 5.9 87 1-89 17-129 (214)
91 1fzq_A ADP-ribosylation factor 99.9 9.2E-23 3.2E-27 130.1 5.0 106 1-110 26-165 (181)
92 1zj6_A ADP-ribosylation factor 99.9 2.4E-22 8.1E-27 128.4 6.8 106 1-110 26-165 (187)
93 2h57_A ADP-ribosylation factor 99.9 4.1E-22 1.4E-26 127.5 7.5 107 1-110 31-174 (190)
94 2zej_A Dardarin, leucine-rich 99.9 9.4E-23 3.2E-27 130.3 4.3 108 1-108 12-162 (184)
95 1ksh_A ARF-like protein 2; sma 99.9 8.7E-22 3E-26 125.4 8.6 106 1-110 28-167 (186)
96 4djt_A GTP-binding nuclear pro 99.9 3.2E-22 1.1E-26 130.4 6.0 111 1-111 21-163 (218)
97 2b6h_A ADP-ribosylation factor 99.9 1.4E-22 4.6E-27 130.5 3.4 106 1-110 39-178 (192)
98 2x77_A ADP-ribosylation factor 99.9 1E-21 3.6E-26 125.4 7.0 106 1-110 32-171 (189)
99 1moz_A ARL1, ADP-ribosylation 99.8 1.1E-21 3.8E-26 124.4 5.3 106 1-110 28-167 (183)
100 2f9l_A RAB11B, member RAS onco 99.8 1.9E-20 6.6E-25 120.8 9.9 110 1-110 15-155 (199)
101 2wji_A Ferrous iron transport 99.8 8.5E-21 2.9E-25 119.3 7.3 108 1-110 13-152 (165)
102 1oix_A RAS-related protein RAB 99.8 4.6E-20 1.6E-24 118.6 10.4 110 1-110 39-179 (191)
103 3c5h_A Glucocorticoid receptor 99.8 1.2E-21 4E-26 131.5 2.7 110 1-110 38-242 (255)
104 3o47_A ADP-ribosylation factor 99.8 1.3E-21 4.5E-26 135.6 2.8 106 1-110 175-314 (329)
105 2lkc_A Translation initiation 99.8 1.3E-20 4.5E-25 118.8 7.1 108 1-110 18-158 (178)
106 3lvq_E ARF-GAP with SH3 domain 99.8 2.3E-20 7.7E-25 135.0 8.6 106 1-110 332-471 (497)
107 3llu_A RAS-related GTP-binding 99.8 1.5E-20 5.1E-25 121.1 3.5 106 1-110 30-184 (196)
108 3dpu_A RAB family protein; roc 99.8 3.8E-20 1.3E-24 135.2 5.8 111 1-111 51-196 (535)
109 2dyk_A GTP-binding protein; GT 99.8 2.3E-19 8E-24 111.3 7.0 108 1-110 11-149 (161)
110 2wjg_A FEOB, ferrous iron tran 99.8 1.2E-19 4E-24 115.6 5.5 108 1-110 17-156 (188)
111 3r7w_A Gtpase1, GTP-binding pr 99.8 4.9E-19 1.7E-23 121.6 6.5 104 1-106 13-165 (307)
112 2gj8_A MNME, tRNA modification 99.8 1.1E-18 3.8E-23 110.4 7.4 108 1-110 14-153 (172)
113 1svi_A GTP-binding protein YSX 99.8 3E-19 1E-23 114.2 4.6 107 1-110 33-182 (195)
114 1nrj_B SR-beta, signal recogni 99.8 5.8E-20 2E-24 119.7 0.3 102 1-110 22-171 (218)
115 3b1v_A Ferrous iron uptake tra 99.7 9.6E-18 3.3E-22 113.7 5.3 107 1-110 13-151 (272)
116 3pqc_A Probable GTP-binding pr 99.7 1.1E-17 3.7E-22 106.6 5.1 106 1-110 33-181 (195)
117 3iby_A Ferrous iron transport 99.7 1.9E-17 6.4E-22 111.3 6.4 108 1-110 11-154 (256)
118 3a1s_A Iron(II) transport prot 99.7 3.9E-17 1.3E-21 109.9 7.7 109 1-110 15-154 (258)
119 3ohm_A Guanine nucleotide-bind 99.7 1.5E-17 5.2E-22 115.2 5.1 79 8-89 132-248 (327)
120 2cxx_A Probable GTP-binding pr 99.7 5.3E-18 1.8E-22 107.8 1.7 105 1-110 11-171 (190)
121 2qu8_A Putative nucleolar GTP- 99.7 3.6E-17 1.2E-21 107.5 5.7 107 1-110 39-192 (228)
122 3k53_A Ferrous iron transport 99.7 6.2E-17 2.1E-21 109.2 6.6 108 1-110 13-153 (271)
123 1u0l_A Probable GTPase ENGC; p 99.7 4.1E-18 1.4E-22 116.8 0.1 100 6-110 32-160 (301)
124 4dcu_A GTP-binding protein ENG 99.7 2.1E-17 7.1E-22 118.8 2.6 108 1-110 205-356 (456)
125 1mky_A Probable GTP-binding pr 99.7 1.1E-16 3.8E-21 114.5 6.2 108 1-110 11-153 (439)
126 2hjg_A GTP-binding protein ENG 99.6 2.6E-17 8.8E-22 117.7 2.2 109 1-111 185-337 (436)
127 4dhe_A Probable GTP-binding pr 99.6 4.2E-17 1.4E-21 106.4 2.7 110 1-110 39-198 (223)
128 3gee_A MNME, tRNA modification 99.6 2.7E-16 9.1E-21 113.7 7.1 108 1-110 243-385 (476)
129 3izy_P Translation initiation 99.6 2.1E-17 7.1E-22 120.8 0.0 109 1-110 14-155 (537)
130 2xtz_A Guanine nucleotide-bind 99.6 2.6E-17 8.9E-22 115.2 0.4 73 16-88 146-263 (354)
131 1wf3_A GTP-binding protein; GT 99.6 7.7E-16 2.6E-20 105.6 7.5 108 1-110 17-160 (301)
132 3qq5_A Small GTP-binding prote 99.6 2E-16 6.9E-21 112.9 4.1 110 1-111 44-184 (423)
133 4fid_A G protein alpha subunit 99.6 2.3E-16 7.8E-21 109.8 3.8 79 8-89 126-242 (340)
134 1cip_A Protein (guanine nucleo 99.6 8.6E-16 2.9E-20 107.5 6.7 66 20-88 177-273 (353)
135 3i8s_A Ferrous iron transport 99.6 2.2E-16 7.7E-21 106.9 3.6 108 1-110 13-156 (274)
136 3iev_A GTP-binding protein ERA 99.6 2.1E-15 7.3E-20 103.6 7.5 109 1-110 20-169 (308)
137 1xzp_A Probable tRNA modificat 99.6 6.3E-16 2.2E-20 111.9 3.7 108 1-110 253-392 (482)
138 2hjg_A GTP-binding protein ENG 99.6 2.4E-16 8.3E-21 112.7 0.9 109 1-110 13-152 (436)
139 3p26_A Elongation factor 1 alp 99.6 1.8E-15 6.1E-20 109.4 5.0 78 34-111 106-226 (483)
140 3geh_A MNME, tRNA modification 99.6 1.7E-15 5.7E-20 109.2 4.5 107 1-110 234-371 (462)
141 1azs_C GS-alpha; complex (lyas 99.6 5.6E-15 1.9E-19 104.8 7.0 63 23-88 204-297 (402)
142 2qag_A Septin-2, protein NEDD5 99.6 6.6E-16 2.3E-20 108.3 2.2 109 1-109 47-220 (361)
143 1zcb_A G alpha I/13; GTP-bindi 99.6 7.5E-15 2.6E-19 103.0 7.3 65 21-88 186-281 (362)
144 1zo1_I IF2, translation initia 99.5 1.4E-15 4.9E-20 110.4 2.2 109 1-111 14-155 (501)
145 3t5d_A Septin-7; GTP-binding p 99.5 3.6E-15 1.2E-19 100.7 3.6 110 1-110 18-191 (274)
146 1zun_B Sulfate adenylate trans 99.5 1.5E-14 5.3E-19 103.3 6.7 76 36-111 101-212 (434)
147 2ged_A SR-beta, signal recogni 99.5 1.3E-15 4.4E-20 97.2 0.8 81 1-89 58-170 (193)
148 4dcu_A GTP-binding protein ENG 99.5 1.5E-15 5E-20 109.1 0.8 109 1-110 33-172 (456)
149 3j2k_7 ERF3, eukaryotic polype 99.5 3.1E-14 1.1E-18 102.0 7.3 75 37-111 93-213 (439)
150 1jny_A EF-1-alpha, elongation 99.5 1.1E-14 3.7E-19 104.2 4.4 77 34-110 79-200 (435)
151 1mky_A Probable GTP-binding pr 99.5 2.7E-14 9.4E-19 102.1 6.3 108 1-110 190-342 (439)
152 1s0u_A EIF-2-gamma, translatio 99.5 4.5E-14 1.5E-18 100.2 7.2 110 1-110 18-185 (408)
153 3izq_1 HBS1P, elongation facto 99.5 5.7E-14 2E-18 104.2 7.2 76 35-110 241-359 (611)
154 3sjy_A Translation initiation 99.5 1.4E-13 4.7E-18 97.6 8.3 72 39-110 75-179 (403)
155 1kk1_A EIF2gamma; initiation o 99.5 1.4E-13 4.7E-18 97.7 6.9 110 1-110 20-187 (410)
156 2xtp_A GTPase IMAP family memb 99.4 8.3E-14 2.8E-18 93.1 5.3 86 1-88 32-152 (260)
157 1r5b_A Eukaryotic peptide chai 99.4 2E-13 6.8E-18 98.5 6.3 73 38-110 120-239 (467)
158 3cb4_D GTP-binding protein LEP 99.4 4.2E-14 1.4E-18 104.7 2.7 110 1-110 14-169 (599)
159 1f60_A Elongation factor EEF1A 99.4 3.6E-13 1.2E-17 96.9 7.5 107 1-110 17-199 (458)
160 2ywe_A GTP-binding protein LEP 99.4 9.6E-14 3.3E-18 102.7 4.0 110 1-110 16-171 (600)
161 1g7s_A Translation initiation 99.4 2.6E-14 8.7E-19 105.7 0.5 109 1-109 15-156 (594)
162 2e87_A Hypothetical protein PH 99.4 6.1E-13 2.1E-17 92.9 7.1 107 1-110 177-323 (357)
163 2c78_A Elongation factor TU-A; 99.4 8.1E-14 2.8E-18 98.8 2.6 109 1-109 21-180 (405)
164 1wb1_A Translation elongation 99.4 1.5E-13 5E-18 99.5 4.0 107 1-110 29-176 (482)
165 2hf9_A Probable hydrogenase ni 99.4 2.7E-14 9.4E-19 93.3 0.1 108 1-110 48-211 (226)
166 1d2e_A Elongation factor TU (E 99.4 2.8E-13 9.7E-18 95.8 5.2 106 1-109 13-171 (397)
167 3mca_A HBS1, elongation factor 99.4 1.6E-13 5.5E-18 101.5 3.2 74 37-110 253-370 (592)
168 2qnr_A Septin-2, protein NEDD5 99.4 1.8E-13 6.3E-18 93.8 3.0 109 1-110 28-201 (301)
169 1ega_A Protein (GTP-binding pr 99.4 3.5E-12 1.2E-16 87.3 8.8 108 1-110 18-162 (301)
170 2aka_B Dynamin-1; fusion prote 99.4 4E-13 1.4E-17 91.1 3.9 72 39-110 125-240 (299)
171 3def_A T7I23.11 protein; chlor 99.4 1.7E-12 5.7E-17 87.1 6.7 85 1-87 46-163 (262)
172 1lnz_A SPO0B-associated GTP-bi 99.3 2E-13 7E-18 95.1 1.3 108 1-110 168-317 (342)
173 3lxx_A GTPase IMAP family memb 99.3 1.4E-12 4.9E-17 86.1 5.3 87 1-89 39-159 (239)
174 2elf_A Protein translation elo 99.3 1.2E-12 4E-17 92.1 3.4 100 1-110 31-167 (370)
175 2qtf_A Protein HFLX, GTP-bindi 99.3 7.6E-12 2.6E-16 87.8 7.3 106 1-110 189-341 (364)
176 3avx_A Elongation factor TS, e 99.3 1.6E-12 5.6E-17 101.6 4.0 109 1-109 306-464 (1289)
177 3tr5_A RF-3, peptide chain rel 99.3 4.4E-13 1.5E-17 98.0 0.8 55 34-88 77-147 (528)
178 3t34_A Dynamin-related protein 99.3 2.7E-12 9.3E-17 89.6 4.8 72 38-109 135-247 (360)
179 2dy1_A Elongation factor G; tr 99.3 2.5E-12 8.5E-17 96.2 4.1 88 1-88 19-139 (665)
180 2h5e_A Peptide chain release f 99.2 3.9E-12 1.3E-16 93.1 4.1 109 1-109 23-181 (529)
181 3lxw_A GTPase IMAP family memb 99.2 1.2E-11 4.1E-16 82.4 5.0 86 1-88 31-152 (247)
182 1pui_A ENGB, probable GTP-bind 99.2 6.6E-12 2.3E-16 80.9 3.2 107 1-110 36-186 (210)
183 2qag_C Septin-7; cell cycle, c 99.2 2.9E-11 9.9E-16 86.2 6.7 110 1-110 41-214 (418)
184 1h65_A Chloroplast outer envel 99.2 3E-11 1E-15 81.3 6.1 86 1-88 49-167 (270)
185 2x2e_A Dynamin-1; nitration, h 99.1 8E-12 2.7E-16 87.1 1.3 74 38-111 129-246 (353)
186 1wxq_A GTP-binding protein; st 99.1 1.7E-10 5.9E-15 81.8 7.2 73 1-73 10-112 (397)
187 1n0u_A EF-2, elongation factor 99.1 6.2E-11 2.1E-15 90.7 5.1 54 35-88 94-163 (842)
188 1jwy_B Dynamin A GTPase domain 99.1 7.2E-11 2.5E-15 80.6 4.4 71 39-109 131-242 (315)
189 1jal_A YCHF protein; nucleotid 99.0 2.8E-10 9.5E-15 79.8 5.3 89 1-90 12-124 (363)
190 1dar_A EF-G, elongation factor 99.0 1.1E-10 3.7E-15 87.7 2.0 86 1-89 22-143 (691)
191 2rdo_7 EF-G, elongation factor 99.0 7.1E-10 2.4E-14 83.5 6.0 87 1-88 20-147 (704)
192 2wsm_A Hydrogenase expression/ 99.0 2.9E-10 9.9E-15 73.8 3.3 69 38-110 108-201 (221)
193 2j69_A Bacterial dynamin-like 98.9 1.8E-09 6.3E-14 81.2 6.2 50 39-88 174-243 (695)
194 2xex_A Elongation factor G; GT 98.9 6.3E-10 2.1E-14 83.7 3.2 86 1-89 20-141 (693)
195 2qpt_A EH domain-containing pr 98.8 2.1E-09 7E-14 79.0 3.5 49 40-88 155-231 (550)
196 1udx_A The GTP-binding protein 98.8 8.1E-09 2.8E-13 73.6 5.5 104 1-110 167-312 (416)
197 2ohf_A Protein OLA1, GTP-bindi 98.7 6.4E-09 2.2E-13 73.7 3.4 79 1-79 32-133 (396)
198 2dby_A GTP-binding protein; GD 98.7 1.7E-08 5.8E-13 70.9 4.4 84 1-89 11-126 (368)
199 3p32_A Probable GTPase RV1496/ 98.6 1.2E-08 4.2E-13 71.1 2.7 70 38-110 171-271 (355)
200 2yv5_A YJEQ protein; hydrolase 98.5 3.5E-07 1.2E-11 62.6 7.9 63 48-110 65-156 (302)
201 1yrb_A ATP(GTP)binding protein 98.5 1.3E-07 4.4E-12 62.7 3.8 49 39-88 109-184 (262)
202 3l82_B F-box only protein 4; T 98.4 7.6E-08 2.6E-12 63.0 0.9 66 45-110 108-210 (227)
203 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 7.5E-07 2.5E-11 63.1 3.5 87 1-87 30-140 (392)
204 2p67_A LAO/AO transport system 98.1 2.9E-07 9.8E-12 63.9 -0.1 70 38-110 148-248 (341)
205 3l2o_B F-box only protein 4; s 98.1 5.8E-07 2E-11 61.4 0.7 65 46-110 194-295 (312)
206 2www_A Methylmalonic aciduria 98.1 1.8E-07 6.3E-12 65.1 -2.2 70 38-110 166-266 (349)
207 3vqt_A RF-3, peptide chain rel 97.7 1.4E-05 4.8E-10 58.8 2.7 54 35-88 96-165 (548)
208 3zvr_A Dynamin-1; hydrolase, D 97.6 0.00012 4E-09 55.9 6.1 71 40-110 151-265 (772)
209 3cnl_A YLQF, putative uncharac 97.5 3E-05 1E-09 52.0 1.9 47 1-51 109-156 (262)
210 3h2y_A GTPase family protein; 97.5 2.3E-05 7.9E-10 54.9 0.6 64 47-110 54-147 (368)
211 4a9a_A Ribosome-interacting GT 97.3 0.00023 7.9E-09 50.2 4.3 69 1-71 82-158 (376)
212 4fn5_A EF-G 1, elongation fact 97.3 0.00011 3.7E-09 55.6 2.3 51 38-88 84-150 (709)
213 3j25_A Tetracycline resistance 97.2 2E-05 7E-10 58.8 -2.4 55 34-88 62-132 (638)
214 3ec1_A YQEH GTPase; atnos1, at 97.1 8.2E-05 2.8E-09 52.1 -0.1 67 44-110 53-149 (369)
215 1puj_A YLQF, conserved hypothe 96.9 0.00076 2.6E-08 45.6 3.5 46 1-50 130-176 (282)
216 1f5n_A Interferon-induced guan 96.1 0.0052 1.8E-07 45.7 3.8 51 1-52 48-104 (592)
217 3ec1_A YQEH GTPase; atnos1, at 95.6 0.01 3.5E-07 41.5 3.5 14 1-14 172-185 (369)
218 1puj_A YLQF, conserved hypothe 95.5 0.006 2E-07 41.2 2.0 54 57-110 18-93 (282)
219 3h2y_A GTPase family protein; 95.3 0.013 4.3E-07 41.0 3.2 49 1-52 170-224 (368)
220 1bif_A 6-phosphofructo-2-kinas 93.1 0.00025 8.5E-09 51.1 -9.5 64 1-65 49-123 (469)
221 1kgd_A CASK, peripheral plasma 90.8 0.11 3.6E-06 32.3 1.8 13 1-13 15-27 (180)
222 3q5d_A Atlastin-1; G protein, 90.7 0.37 1.3E-05 34.7 4.7 51 1-51 77-152 (447)
223 3kb2_A SPBC2 prophage-derived 90.3 0.13 4.3E-06 31.1 1.7 13 1-13 11-23 (173)
224 3tr0_A Guanylate kinase, GMP k 89.8 0.15 5.1E-06 31.9 1.8 14 1-14 17-30 (205)
225 3a00_A Guanylate kinase, GMP k 89.6 0.15 5.2E-06 31.7 1.7 13 1-13 11-23 (186)
226 1zp6_A Hypothetical protein AT 89.4 0.16 5.6E-06 31.3 1.8 14 1-14 19-32 (191)
227 1ye8_A Protein THEP1, hypothet 89.2 0.17 6E-06 31.5 1.8 13 1-13 10-22 (178)
228 2qag_B Septin-6, protein NEDD5 89.1 0.88 3E-05 32.6 5.5 50 1-50 52-106 (427)
229 1lvg_A Guanylate kinase, GMP k 88.9 0.18 6.3E-06 31.8 1.8 13 1-13 14-26 (198)
230 1np6_A Molybdopterin-guanine d 88.8 0.19 6.6E-06 31.4 1.8 13 1-13 16-28 (174)
231 1kag_A SKI, shikimate kinase I 88.6 0.2 7E-06 30.4 1.8 13 1-13 14-26 (173)
232 1qhx_A CPT, protein (chloramph 88.5 0.21 7E-06 30.5 1.8 13 1-13 13-25 (178)
233 1ly1_A Polynucleotide kinase; 88.5 0.21 7.1E-06 30.4 1.8 13 1-13 12-24 (181)
234 3t61_A Gluconokinase; PSI-biol 88.5 0.2 7E-06 31.4 1.8 13 1-13 28-40 (202)
235 2jaq_A Deoxyguanosine kinase; 88.1 0.23 7.8E-06 30.8 1.8 13 1-13 10-22 (205)
236 1nks_A Adenylate kinase; therm 88.1 0.23 7.8E-06 30.5 1.8 13 1-13 11-23 (194)
237 2qor_A Guanylate kinase; phosp 88.1 0.23 7.8E-06 31.3 1.8 13 1-13 22-34 (204)
238 3ney_A 55 kDa erythrocyte memb 88.0 0.23 7.8E-06 31.8 1.8 13 1-13 29-41 (197)
239 1jbk_A CLPB protein; beta barr 88.0 0.24 8.1E-06 30.0 1.8 14 1-14 53-66 (195)
240 3tau_A Guanylate kinase, GMP k 88.0 0.23 7.9E-06 31.5 1.8 14 1-14 18-31 (208)
241 1s96_A Guanylate kinase, GMP k 88.0 0.23 7.9E-06 32.1 1.8 14 1-14 26-39 (219)
242 3asz_A Uridine kinase; cytidin 87.9 0.24 8E-06 31.2 1.8 13 1-13 16-28 (211)
243 3lw7_A Adenylate kinase relate 87.9 0.22 7.4E-06 29.9 1.6 11 1-11 11-21 (179)
244 3sop_A Neuronal-specific septi 87.8 0.23 7.9E-06 33.1 1.7 14 1-14 12-25 (270)
245 2z0h_A DTMP kinase, thymidylat 87.5 0.26 8.8E-06 30.5 1.8 13 1-13 10-22 (197)
246 2j41_A Guanylate kinase; GMP, 87.4 0.26 9E-06 30.7 1.8 14 1-14 16-29 (207)
247 1z6g_A Guanylate kinase; struc 87.3 0.26 9E-06 31.5 1.8 13 1-13 33-45 (218)
248 1znw_A Guanylate kinase, GMP k 87.3 0.27 9.1E-06 31.1 1.8 13 1-13 30-42 (207)
249 1kht_A Adenylate kinase; phosp 87.2 0.28 9.5E-06 30.1 1.8 13 1-13 13-25 (192)
250 3c8u_A Fructokinase; YP_612366 87.2 0.26 8.7E-06 31.2 1.6 13 1-13 32-44 (208)
251 2rhm_A Putative kinase; P-loop 87.1 0.28 9.7E-06 30.2 1.8 13 1-13 15-27 (193)
252 4eun_A Thermoresistant glucoki 87.0 0.29 9.8E-06 30.7 1.8 13 1-13 39-51 (200)
253 3ec2_A DNA replication protein 87.0 0.28 9.7E-06 30.1 1.7 13 1-13 48-60 (180)
254 4gp7_A Metallophosphoesterase; 86.9 0.22 7.7E-06 30.6 1.2 10 1-10 19-28 (171)
255 1htw_A HI0065; nucleotide-bind 86.9 0.3 1E-05 29.9 1.8 15 1-15 43-57 (158)
256 1gtv_A TMK, thymidylate kinase 86.8 0.21 7.3E-06 31.3 1.1 13 1-13 10-22 (214)
257 2bdt_A BH3686; alpha-beta prot 86.7 0.3 1E-05 30.2 1.8 13 1-13 12-24 (189)
258 1xjc_A MOBB protein homolog; s 86.6 0.32 1.1E-05 30.4 1.8 13 1-13 14-26 (169)
259 2yv5_A YJEQ protein; hydrolase 86.4 0.3 1E-05 33.1 1.7 12 1-12 175-186 (302)
260 2ehv_A Hypothetical protein PH 86.4 0.3 1E-05 31.3 1.7 12 1-12 40-51 (251)
261 4a74_A DNA repair and recombin 86.4 0.32 1.1E-05 30.8 1.8 13 1-13 35-47 (231)
262 2qen_A Walker-type ATPase; unk 86.1 0.32 1.1E-05 32.6 1.8 14 1-14 41-54 (350)
263 2if2_A Dephospho-COA kinase; a 86.0 0.34 1.2E-05 30.2 1.8 13 1-13 11-23 (204)
264 1knq_A Gluconate kinase; ALFA/ 85.9 0.36 1.2E-05 29.4 1.8 13 1-13 18-30 (175)
265 3trf_A Shikimate kinase, SK; a 85.9 0.36 1.2E-05 29.6 1.8 13 1-13 15-27 (185)
266 3vaa_A Shikimate kinase, SK; s 85.8 0.36 1.2E-05 30.2 1.8 13 1-13 35-47 (199)
267 1ex7_A Guanylate kinase; subst 85.8 0.36 1.2E-05 30.5 1.8 14 1-14 11-24 (186)
268 2rcn_A Probable GTPase ENGC; Y 85.8 0.32 1.1E-05 34.0 1.6 15 1-15 225-239 (358)
269 2p65_A Hypothetical protein PF 85.7 0.31 1.1E-05 29.5 1.4 14 1-14 53-66 (187)
270 3cm0_A Adenylate kinase; ATP-b 85.7 0.37 1.3E-05 29.5 1.8 13 1-13 14-26 (186)
271 2w0m_A SSO2452; RECA, SSPF, un 85.5 0.36 1.2E-05 30.4 1.7 13 1-13 33-45 (235)
272 2jeo_A Uridine-cytidine kinase 85.5 0.37 1.3E-05 31.3 1.8 13 1-13 35-47 (245)
273 2pbr_A DTMP kinase, thymidylat 85.4 0.39 1.3E-05 29.5 1.8 13 1-13 10-22 (195)
274 2cvh_A DNA repair and recombin 85.4 0.37 1.3E-05 30.3 1.7 13 1-13 30-42 (220)
275 2fna_A Conserved hypothetical 85.4 0.37 1.3E-05 32.4 1.8 14 1-14 40-53 (357)
276 2plr_A DTMP kinase, probable t 85.3 0.4 1.4E-05 29.9 1.8 13 1-13 14-26 (213)
277 1tev_A UMP-CMP kinase; ploop, 85.2 0.4 1.4E-05 29.4 1.8 13 1-13 13-25 (196)
278 2wwf_A Thymidilate kinase, put 85.0 0.41 1.4E-05 29.9 1.8 13 1-13 20-32 (212)
279 3uie_A Adenylyl-sulfate kinase 85.0 0.42 1.4E-05 30.0 1.8 13 1-13 35-47 (200)
280 2v54_A DTMP kinase, thymidylat 84.9 0.42 1.4E-05 29.7 1.8 14 1-14 14-27 (204)
281 1jjv_A Dephospho-COA kinase; P 84.9 0.41 1.4E-05 30.0 1.8 13 1-13 12-24 (206)
282 1cke_A CK, MSSA, protein (cyti 84.8 0.42 1.4E-05 30.3 1.8 13 1-13 15-27 (227)
283 2bbw_A Adenylate kinase 4, AK4 84.8 0.41 1.4E-05 31.0 1.7 12 1-12 37-48 (246)
284 1e6c_A Shikimate kinase; phosp 84.7 0.44 1.5E-05 28.8 1.8 13 1-13 12-24 (173)
285 1njg_A DNA polymerase III subu 84.6 0.44 1.5E-05 29.9 1.8 13 1-13 55-67 (250)
286 2pt5_A Shikimate kinase, SK; a 84.6 0.46 1.6E-05 28.6 1.8 13 1-13 10-22 (168)
287 2i3b_A HCR-ntpase, human cance 84.4 0.45 1.5E-05 30.0 1.8 13 1-13 11-23 (189)
288 1nn5_A Similar to deoxythymidy 84.3 0.47 1.6E-05 29.7 1.8 13 1-13 19-31 (215)
289 3iij_A Coilin-interacting nucl 84.2 0.48 1.6E-05 29.0 1.8 13 1-13 21-33 (180)
290 3fb4_A Adenylate kinase; psych 84.2 0.47 1.6E-05 29.9 1.8 13 1-13 10-22 (216)
291 1zuh_A Shikimate kinase; alpha 84.2 0.48 1.7E-05 28.6 1.8 13 1-13 17-29 (168)
292 2yvu_A Probable adenylyl-sulfa 84.1 0.49 1.7E-05 29.2 1.8 13 1-13 23-35 (186)
293 1t9h_A YLOQ, probable GTPase E 84.1 0.19 6.6E-06 34.3 -0.1 14 1-14 183-196 (307)
294 2qm8_A GTPase/ATPase; G protei 84.1 0.46 1.6E-05 32.7 1.8 70 38-110 147-248 (337)
295 2c95_A Adenylate kinase 1; tra 84.1 0.49 1.7E-05 29.2 1.8 13 1-13 19-31 (196)
296 2chg_A Replication factor C sm 84.0 0.49 1.7E-05 29.3 1.8 13 1-13 48-60 (226)
297 1qf9_A UMP/CMP kinase, protein 83.9 0.5 1.7E-05 28.9 1.8 13 1-13 16-28 (194)
298 1zd8_A GTP:AMP phosphotransfer 83.8 0.5 1.7E-05 30.2 1.8 13 1-13 17-29 (227)
299 2pcj_A ABC transporter, lipopr 83.7 0.43 1.5E-05 30.8 1.4 13 1-13 40-52 (224)
300 2bwj_A Adenylate kinase 5; pho 83.7 0.51 1.8E-05 29.1 1.8 13 1-13 22-34 (199)
301 1rz3_A Hypothetical protein rb 83.6 0.51 1.8E-05 29.6 1.8 13 1-13 32-44 (201)
302 1n0w_A DNA repair protein RAD5 83.6 0.49 1.7E-05 30.1 1.7 14 1-14 34-47 (243)
303 1y63_A LMAJ004144AAA protein; 83.6 0.52 1.8E-05 29.1 1.8 14 1-14 20-33 (184)
304 2pez_A Bifunctional 3'-phospho 83.6 0.53 1.8E-05 28.8 1.8 13 1-13 15-27 (179)
305 1via_A Shikimate kinase; struc 83.5 0.53 1.8E-05 28.7 1.8 13 1-13 14-26 (175)
306 2qt1_A Nicotinamide riboside k 83.5 0.51 1.8E-05 29.6 1.7 13 1-13 31-43 (207)
307 3dl0_A Adenylate kinase; phosp 83.5 0.52 1.8E-05 29.7 1.8 13 1-13 10-22 (216)
308 2onk_A Molybdate/tungstate ABC 83.4 0.51 1.8E-05 30.9 1.7 13 1-13 34-46 (240)
309 3bos_A Putative DNA replicatio 83.4 0.53 1.8E-05 29.7 1.8 13 1-13 62-74 (242)
310 1nij_A Hypothetical protein YJ 83.3 0.44 1.5E-05 32.4 1.4 14 1-14 14-27 (318)
311 1u0l_A Probable GTPase ENGC; p 83.3 0.41 1.4E-05 32.3 1.3 14 1-14 179-192 (301)
312 2dr3_A UPF0273 protein PH0284; 83.3 0.52 1.8E-05 30.1 1.7 13 1-13 33-45 (247)
313 3lnc_A Guanylate kinase, GMP k 83.2 0.3 1E-05 31.3 0.6 12 1-12 37-48 (231)
314 3tif_A Uncharacterized ABC tra 83.2 0.46 1.6E-05 30.9 1.4 13 1-13 41-53 (235)
315 1cr0_A DNA primase/helicase; R 83.0 0.54 1.9E-05 31.3 1.8 13 1-13 45-57 (296)
316 2cdn_A Adenylate kinase; phosp 82.8 0.58 2E-05 29.2 1.8 13 1-13 30-42 (201)
317 2vli_A Antibiotic resistance p 82.8 0.38 1.3E-05 29.4 0.9 13 1-13 15-27 (183)
318 1ukz_A Uridylate kinase; trans 82.7 0.59 2E-05 29.1 1.8 13 1-13 25-37 (203)
319 2ze6_A Isopentenyl transferase 82.7 0.57 2E-05 30.7 1.8 13 1-13 11-23 (253)
320 3aez_A Pantothenate kinase; tr 82.7 0.57 1.9E-05 31.9 1.8 13 1-13 100-112 (312)
321 1nlf_A Regulatory protein REPA 82.6 0.56 1.9E-05 31.0 1.7 13 1-13 40-52 (279)
322 2vp4_A Deoxynucleoside kinase; 82.6 0.38 1.3E-05 30.9 0.9 14 1-14 30-43 (230)
323 4hlc_A DTMP kinase, thymidylat 82.6 0.6 2.1E-05 29.8 1.8 13 1-13 12-24 (205)
324 2d2e_A SUFC protein; ABC-ATPas 82.5 0.58 2E-05 30.7 1.7 14 1-14 39-52 (250)
325 1gvn_B Zeta; postsegregational 82.3 0.56 1.9E-05 31.5 1.6 13 1-13 43-55 (287)
326 2f1r_A Molybdopterin-guanine d 82.3 0.35 1.2E-05 30.0 0.6 13 1-13 12-24 (171)
327 2cbz_A Multidrug resistance-as 82.2 0.52 1.8E-05 30.7 1.4 13 1-13 41-53 (237)
328 2iyv_A Shikimate kinase, SK; t 82.2 0.64 2.2E-05 28.5 1.8 13 1-13 12-24 (184)
329 1uf9_A TT1252 protein; P-loop, 82.1 0.65 2.2E-05 28.8 1.8 14 1-14 18-31 (203)
330 3b85_A Phosphate starvation-in 82.0 0.51 1.7E-05 30.2 1.3 13 1-13 32-44 (208)
331 2zu0_C Probable ATP-dependent 82.0 0.62 2.1E-05 30.9 1.7 14 1-14 56-69 (267)
332 2eyu_A Twitching motility prot 82.0 0.63 2.2E-05 30.8 1.8 13 1-13 35-47 (261)
333 1b0u_A Histidine permease; ABC 81.9 0.54 1.8E-05 31.1 1.4 13 1-13 42-54 (262)
334 1sgw_A Putative ABC transporte 81.9 0.55 1.9E-05 30.2 1.4 13 1-13 45-57 (214)
335 1e4v_A Adenylate kinase; trans 81.9 0.66 2.2E-05 29.3 1.8 13 1-13 10-22 (214)
336 1aky_A Adenylate kinase; ATP:A 81.9 0.66 2.2E-05 29.4 1.8 13 1-13 14-26 (220)
337 2zts_A Putative uncharacterize 81.8 0.64 2.2E-05 29.7 1.7 13 1-13 40-52 (251)
338 1g6h_A High-affinity branched- 81.8 0.55 1.9E-05 31.0 1.4 13 1-13 43-55 (257)
339 2pze_A Cystic fibrosis transme 81.7 0.57 1.9E-05 30.3 1.4 13 1-13 44-56 (229)
340 1sq5_A Pantothenate kinase; P- 81.6 0.65 2.2E-05 31.4 1.8 13 1-13 90-102 (308)
341 1zak_A Adenylate kinase; ATP:A 81.6 0.68 2.3E-05 29.4 1.8 13 1-13 15-27 (222)
342 2ff7_A Alpha-hemolysin translo 81.5 0.58 2E-05 30.7 1.4 13 1-13 45-57 (247)
343 1ji0_A ABC transporter; ATP bi 81.5 0.58 2E-05 30.5 1.4 13 1-13 42-54 (240)
344 2qi9_C Vitamin B12 import ATP- 81.5 0.58 2E-05 30.8 1.4 13 1-13 36-48 (249)
345 1mv5_A LMRA, multidrug resista 81.4 0.59 2E-05 30.5 1.4 13 1-13 38-50 (243)
346 1p6x_A Thymidine kinase; P-loo 81.3 0.64 2.2E-05 32.2 1.6 13 1-13 17-29 (334)
347 1tq4_A IIGP1, interferon-induc 81.3 1.1 3.9E-05 31.8 2.9 14 1-14 79-92 (413)
348 2xb4_A Adenylate kinase; ATP-b 81.2 0.72 2.5E-05 29.5 1.8 13 1-13 10-22 (223)
349 3hjn_A DTMP kinase, thymidylat 81.2 0.73 2.5E-05 29.1 1.8 12 1-12 10-21 (197)
350 1t9h_A YLOQ, probable GTPase E 81.1 1.5 5.1E-05 29.9 3.4 60 51-110 75-164 (307)
351 2ocp_A DGK, deoxyguanosine kin 81.1 0.72 2.4E-05 29.7 1.8 13 1-13 12-24 (241)
352 2qby_A CDC6 homolog 1, cell di 80.9 0.71 2.4E-05 31.3 1.8 13 1-13 55-67 (386)
353 1vht_A Dephospho-COA kinase; s 80.7 0.76 2.6E-05 29.0 1.8 13 1-13 14-26 (218)
354 1vpl_A ABC transporter, ATP-bi 80.7 0.63 2.2E-05 30.8 1.4 13 1-13 51-63 (256)
355 2olj_A Amino acid ABC transpor 80.7 0.63 2.2E-05 30.9 1.4 13 1-13 60-72 (263)
356 1odf_A YGR205W, hypothetical 3 80.7 0.74 2.5E-05 31.0 1.8 12 1-12 41-52 (290)
357 3a4m_A L-seryl-tRNA(SEC) kinas 80.6 0.75 2.6E-05 30.2 1.8 13 1-13 14-26 (260)
358 3tlx_A Adenylate kinase 2; str 80.6 0.76 2.6E-05 29.9 1.8 13 1-13 39-51 (243)
359 3gfo_A Cobalt import ATP-bindi 80.5 0.65 2.2E-05 31.1 1.4 13 1-13 44-56 (275)
360 2ghi_A Transport protein; mult 80.4 0.66 2.2E-05 30.7 1.4 13 1-13 56-68 (260)
361 2orw_A Thymidine kinase; TMTK, 80.3 0.78 2.7E-05 28.6 1.7 13 1-13 13-25 (184)
362 2w58_A DNAI, primosome compone 80.3 0.81 2.8E-05 28.4 1.8 13 1-13 64-76 (202)
363 2kjq_A DNAA-related protein; s 80.3 0.59 2E-05 28.2 1.1 13 1-13 46-58 (149)
364 3tqc_A Pantothenate kinase; bi 80.2 0.78 2.7E-05 31.5 1.8 12 1-12 102-113 (321)
365 4g1u_C Hemin import ATP-bindin 80.2 0.64 2.2E-05 30.9 1.3 13 1-13 47-59 (266)
366 2ixe_A Antigen peptide transpo 80.1 0.68 2.3E-05 30.8 1.4 13 1-13 55-67 (271)
367 1m7g_A Adenylylsulfate kinase; 80.0 0.83 2.8E-05 28.8 1.8 13 1-13 35-47 (211)
368 2yz2_A Putative ABC transporte 80.0 0.69 2.4E-05 30.7 1.4 13 1-13 43-55 (266)
369 2grj_A Dephospho-COA kinase; T 80.0 0.84 2.9E-05 28.8 1.8 14 1-14 22-35 (192)
370 2ihy_A ABC transporter, ATP-bi 79.9 0.69 2.4E-05 31.0 1.4 13 1-13 57-69 (279)
371 2nq2_C Hypothetical ABC transp 79.7 0.7 2.4E-05 30.4 1.4 13 1-13 41-53 (253)
372 4eaq_A DTMP kinase, thymidylat 79.3 0.89 3.1E-05 29.4 1.8 13 1-13 36-48 (229)
373 4e22_A Cytidylate kinase; P-lo 79.3 0.85 2.9E-05 29.8 1.7 12 1-12 37-48 (252)
374 1w5s_A Origin recognition comp 79.2 0.86 2.9E-05 31.4 1.7 13 1-13 62-74 (412)
375 1ixz_A ATP-dependent metallopr 79.1 0.9 3.1E-05 29.4 1.8 14 1-14 59-72 (254)
376 1lw7_A Transcriptional regulat 79.1 0.82 2.8E-05 31.5 1.6 13 1-13 180-192 (365)
377 1e2k_A Thymidine kinase; trans 79.0 0.72 2.4E-05 31.9 1.3 13 1-13 14-26 (331)
378 1ak2_A Adenylate kinase isoenz 78.9 0.94 3.2E-05 29.1 1.8 13 1-13 26-38 (233)
379 3be4_A Adenylate kinase; malar 78.9 0.94 3.2E-05 28.7 1.8 13 1-13 15-27 (217)
380 3kta_A Chromosome segregation 78.6 0.97 3.3E-05 27.6 1.7 12 1-12 36-47 (182)
381 1rj9_A FTSY, signal recognitio 78.4 0.96 3.3E-05 30.7 1.8 12 1-12 112-123 (304)
382 2pjz_A Hypothetical protein ST 78.4 0.83 2.8E-05 30.3 1.4 13 1-13 40-52 (263)
383 1in4_A RUVB, holliday junction 78.3 0.97 3.3E-05 30.8 1.8 13 1-13 61-73 (334)
384 1ltq_A Polynucleotide kinase; 78.2 0.98 3.4E-05 29.9 1.8 13 1-13 12-24 (301)
385 3b9q_A Chloroplast SRP recepto 78.2 0.98 3.4E-05 30.6 1.8 13 1-13 110-122 (302)
386 1of1_A Thymidine kinase; trans 77.9 0.93 3.2E-05 31.9 1.6 13 1-13 59-71 (376)
387 3ake_A Cytidylate kinase; CMP 77.9 1.1 3.6E-05 27.8 1.8 13 1-13 12-24 (208)
388 1uj2_A Uridine-cytidine kinase 77.7 1.1 3.6E-05 29.2 1.8 13 1-13 32-44 (252)
389 2bbs_A Cystic fibrosis transme 77.7 0.89 3E-05 30.7 1.4 13 1-13 74-86 (290)
390 2p5t_B PEZT; postsegregational 77.5 0.85 2.9E-05 29.8 1.3 13 1-13 42-54 (253)
391 1fnn_A CDC6P, cell division co 77.4 1.1 3.6E-05 30.6 1.8 14 1-14 54-67 (389)
392 4ido_A Atlastin-1; GTPase, GTP 77.2 5.9 0.0002 28.7 5.6 51 1-51 77-152 (457)
393 3h4m_A Proteasome-activating n 77.2 1.1 3.7E-05 29.4 1.7 14 1-14 61-74 (285)
394 1p5z_B DCK, deoxycytidine kina 76.9 0.59 2E-05 30.6 0.3 13 1-13 34-46 (263)
395 1pzn_A RAD51, DNA repair and r 76.9 1.1 3.7E-05 30.9 1.7 14 1-14 141-154 (349)
396 2v9p_A Replication protein E1; 76.9 1.1 3.8E-05 30.5 1.7 12 1-12 136-147 (305)
397 3e70_C DPA, signal recognition 76.8 1.1 3.9E-05 30.7 1.8 13 1-13 139-151 (328)
398 2v1u_A Cell division control p 76.8 1.1 3.9E-05 30.4 1.8 13 1-13 54-66 (387)
399 3bh0_A DNAB-like replicative h 76.6 1.1 3.9E-05 30.3 1.7 14 1-14 78-91 (315)
400 3cnl_A YLQF, putative uncharac 76.5 0.84 2.9E-05 30.2 1.0 35 75-110 46-88 (262)
401 1z47_A CYSA, putative ABC-tran 76.5 1.1 3.9E-05 31.1 1.7 13 1-13 51-63 (355)
402 1l8q_A Chromosomal replication 76.5 1.2 4E-05 30.0 1.7 13 1-13 47-59 (324)
403 1z6t_A APAF-1, apoptotic prote 76.4 1.1 3.9E-05 32.6 1.8 13 1-13 157-169 (591)
404 2x8a_A Nuclear valosin-contain 76.3 1.2 4.2E-05 29.5 1.8 13 1-13 54-66 (274)
405 3fvq_A Fe(3+) IONS import ATP- 76.2 1.2 4E-05 31.1 1.7 13 1-13 40-52 (359)
406 1lv7_A FTSH; alpha/beta domain 76.2 1.2 4.3E-05 28.8 1.8 13 1-13 55-67 (257)
407 2f6r_A COA synthase, bifunctio 76.1 1.2 4.1E-05 29.7 1.7 13 1-13 85-97 (281)
408 2it1_A 362AA long hypothetical 75.7 1.2 4.2E-05 31.0 1.7 13 1-13 39-51 (362)
409 2yyz_A Sugar ABC transporter, 75.7 1.2 4.3E-05 31.0 1.7 13 1-13 39-51 (359)
410 2obl_A ESCN; ATPase, hydrolase 75.6 1.3 4.3E-05 30.7 1.8 14 1-14 81-94 (347)
411 1iy2_A ATP-dependent metallopr 75.6 1.3 4.4E-05 29.1 1.8 14 1-14 83-96 (278)
412 1g29_1 MALK, maltose transport 75.5 1.3 4.3E-05 31.1 1.7 13 1-13 39-51 (372)
413 2qby_B CDC6 homolog 3, cell di 75.3 1.3 4.4E-05 30.2 1.8 13 1-13 55-67 (384)
414 2qz4_A Paraplegin; AAA+, SPG7, 75.3 1.3 4.6E-05 28.4 1.8 13 1-13 49-61 (262)
415 2r62_A Cell division protease 75.3 1.4 4.6E-05 28.7 1.8 13 1-13 54-66 (268)
416 2gza_A Type IV secretion syste 75.3 1.3 4.4E-05 30.7 1.7 13 1-13 185-197 (361)
417 1c9k_A COBU, adenosylcobinamid 75.2 1.4 4.7E-05 27.8 1.7 14 1-14 9-22 (180)
418 3jvv_A Twitching mobility prot 75.2 1.3 4.5E-05 30.7 1.8 13 1-13 133-145 (356)
419 1v43_A Sugar-binding transport 75.1 1.3 4.5E-05 31.0 1.7 13 1-13 47-59 (372)
420 4edh_A DTMP kinase, thymidylat 74.9 1.4 4.9E-05 28.2 1.8 13 1-13 16-28 (213)
421 3t15_A Ribulose bisphosphate c 74.5 1.4 4.9E-05 29.4 1.8 13 1-13 46-58 (293)
422 2px0_A Flagellar biosynthesis 74.5 1.4 4.9E-05 29.7 1.8 12 1-12 115-126 (296)
423 3d31_A Sulfate/molybdate ABC t 74.4 1.1 3.8E-05 31.0 1.3 13 1-13 36-48 (348)
424 3b9p_A CG5977-PA, isoform A; A 74.4 1.4 4.9E-05 29.0 1.8 13 1-13 64-76 (297)
425 3rlf_A Maltose/maltodextrin im 74.4 1.4 4.8E-05 31.0 1.7 13 1-13 39-51 (381)
426 2a5y_B CED-4; apoptosis; HET: 74.1 1.4 4.8E-05 32.1 1.8 13 1-13 162-174 (549)
427 3nwj_A ATSK2; P loop, shikimat 74.1 1.5 5.2E-05 28.9 1.8 13 1-13 58-70 (250)
428 3lda_A DNA repair protein RAD5 74.1 1.4 4.8E-05 31.1 1.7 12 1-12 188-199 (400)
429 3tui_C Methionine import ATP-b 74.0 1.4 5E-05 30.8 1.7 13 1-13 64-76 (366)
430 2ewv_A Twitching motility prot 74.0 1.4 5E-05 30.6 1.7 13 1-13 146-158 (372)
431 1ofh_A ATP-dependent HSL prote 74.0 1.5 5.1E-05 28.9 1.8 13 1-13 60-72 (310)
432 2pt7_A CAG-ALFA; ATPase, prote 73.6 1.4 4.7E-05 30.2 1.6 14 1-14 181-194 (330)
433 1a7j_A Phosphoribulokinase; tr 73.6 0.73 2.5E-05 31.0 0.1 13 1-13 15-27 (290)
434 2yhs_A FTSY, cell division pro 73.6 1.5 5.1E-05 32.1 1.8 13 1-13 303-315 (503)
435 4dzz_A Plasmid partitioning pr 73.5 1.6 5.4E-05 27.0 1.7 12 1-12 12-23 (206)
436 2og2_A Putative signal recogni 73.5 1.6 5.3E-05 30.5 1.8 13 1-13 167-179 (359)
437 1d2n_A N-ethylmaleimide-sensit 73.5 1.6 5.4E-05 28.5 1.8 14 1-14 74-87 (272)
438 3syl_A Protein CBBX; photosynt 73.3 1.6 5.5E-05 28.9 1.8 12 1-12 77-88 (309)
439 1osn_A Thymidine kinase, VZV-T 73.2 1.2 4.3E-05 30.8 1.2 13 1-13 22-35 (341)
440 1f2t_A RAD50 ABC-ATPase; DNA d 73.0 1.7 5.8E-05 26.1 1.7 12 1-12 33-44 (149)
441 3nh6_A ATP-binding cassette SU 73.0 1.1 3.8E-05 30.5 1.0 13 1-13 90-102 (306)
442 1sxj_E Activator 1 40 kDa subu 72.9 1.3 4.4E-05 30.0 1.3 13 1-13 46-58 (354)
443 2r8r_A Sensor protein; KDPD, P 72.8 1.7 5.7E-05 28.5 1.7 12 1-12 16-27 (228)
444 1sxj_C Activator 1 40 kDa subu 72.6 1.6 5.6E-05 29.5 1.7 14 1-14 56-69 (340)
445 2b8t_A Thymidine kinase; deoxy 72.5 1.8 6E-05 28.1 1.8 13 1-13 22-34 (223)
446 3ld9_A DTMP kinase, thymidylat 72.5 1.8 6E-05 28.1 1.8 13 1-13 31-43 (223)
447 3v9p_A DTMP kinase, thymidylat 72.3 1.3 4.6E-05 28.7 1.2 13 1-13 35-47 (227)
448 1sxj_D Activator 1 41 kDa subu 72.2 1.7 5.9E-05 29.2 1.8 13 1-13 68-80 (353)
449 2dpy_A FLII, flagellum-specifi 72.2 1.7 5.8E-05 31.1 1.8 14 1-14 167-180 (438)
450 1jr3_A DNA polymerase III subu 72.0 1.8 6E-05 29.4 1.8 13 1-13 48-60 (373)
451 3gd7_A Fusion complex of cysti 71.8 1.7 6E-05 30.6 1.7 13 1-13 57-69 (390)
452 3uk6_A RUVB-like 2; hexameric 71.8 1.8 6.1E-05 29.4 1.8 14 1-14 80-93 (368)
453 4tmk_A Protein (thymidylate ki 71.6 1.9 6.5E-05 27.6 1.8 13 1-13 13-25 (213)
454 3tmk_A Thymidylate kinase; pho 71.6 1.9 6.4E-05 27.8 1.7 13 1-13 15-27 (216)
455 2qmh_A HPR kinase/phosphorylas 71.0 1.8 6.3E-05 27.9 1.6 14 1-14 44-57 (205)
456 1tf7_A KAIC; homohexamer, hexa 71.0 1.8 6.1E-05 31.4 1.7 11 1-11 49-59 (525)
457 1p9r_A General secretion pathw 70.9 1.9 6.5E-05 30.6 1.8 13 1-13 177-189 (418)
458 1vma_A Cell division protein F 70.8 2 6.7E-05 29.2 1.8 13 1-13 114-126 (306)
459 1oxx_K GLCV, glucose, ABC tran 70.8 1.1 3.8E-05 31.1 0.6 13 1-13 41-53 (353)
460 2j37_W Signal recognition part 70.6 1.9 6.3E-05 31.5 1.7 52 37-88 182-253 (504)
461 3cwq_A Para family chromosome 70.6 2 6.8E-05 27.1 1.7 12 1-12 11-22 (209)
462 3lv8_A DTMP kinase, thymidylat 70.4 2.1 7.1E-05 28.0 1.8 13 1-13 37-49 (236)
463 2npi_A Protein CLP1; CLP1-PCF1 70.4 2 6.7E-05 31.0 1.8 14 1-14 148-161 (460)
464 2zr9_A Protein RECA, recombina 70.4 1.9 6.6E-05 29.7 1.7 13 1-13 71-83 (349)
465 1q3t_A Cytidylate kinase; nucl 70.3 2.1 7.3E-05 27.4 1.8 13 1-13 26-38 (236)
466 3n70_A Transport activator; si 70.3 2.2 7.6E-05 25.2 1.8 14 1-14 34-47 (145)
467 2z43_A DNA repair and recombin 70.3 2 6.7E-05 29.2 1.7 14 1-14 117-130 (324)
468 3r20_A Cytidylate kinase; stru 70.3 2.1 7.2E-05 28.0 1.8 13 1-13 19-31 (233)
469 2r6a_A DNAB helicase, replicat 70.2 1.9 6.6E-05 30.7 1.7 13 1-13 213-225 (454)
470 3d3q_A TRNA delta(2)-isopenten 70.2 2 7E-05 29.7 1.8 13 1-13 17-29 (340)
471 2i1q_A DNA repair and recombin 70.1 2 6.8E-05 28.9 1.7 14 1-14 108-121 (322)
472 3pfi_A Holliday junction ATP-d 70.0 2.1 7.1E-05 28.8 1.8 14 1-14 65-78 (338)
473 3zvl_A Bifunctional polynucleo 70.0 1.8 6.3E-05 30.5 1.5 13 1-13 268-280 (416)
474 4i1u_A Dephospho-COA kinase; s 69.9 2.2 7.5E-05 27.5 1.8 13 1-13 19-31 (210)
475 1hqc_A RUVB; extended AAA-ATPa 69.4 1.9 6.4E-05 28.7 1.4 13 1-13 48-60 (324)
476 3cf0_A Transitional endoplasmi 69.3 2.2 7.5E-05 28.5 1.7 14 1-14 59-72 (301)
477 3kjh_A CO dehydrogenase/acetyl 69.2 1.7 5.9E-05 27.6 1.2 12 1-12 10-21 (254)
478 3szr_A Interferon-induced GTP- 69.1 2 6.9E-05 31.9 1.7 15 1-15 55-69 (608)
479 4fcw_A Chaperone protein CLPB; 69.1 2.2 7.6E-05 28.2 1.7 14 1-14 57-70 (311)
480 2q6t_A DNAB replication FORK h 68.9 2.1 7.3E-05 30.3 1.7 14 1-14 210-223 (444)
481 1v5w_A DMC1, meiotic recombina 68.9 2.2 7.5E-05 29.3 1.7 14 1-14 132-145 (343)
482 3crm_A TRNA delta(2)-isopenten 68.7 2.3 7.9E-05 29.2 1.8 13 1-13 15-27 (323)
483 1cp2_A CP2, nitrogenase iron p 68.7 2.3 7.8E-05 27.6 1.7 12 1-12 11-22 (269)
484 2h92_A Cytidylate kinase; ross 68.5 2.4 8.3E-05 26.5 1.8 13 1-13 13-25 (219)
485 1xwi_A SKD1 protein; VPS4B, AA 68.4 2.3 8E-05 28.8 1.8 14 1-14 55-68 (322)
486 1tf7_A KAIC; homohexamer, hexa 68.2 2.3 7.8E-05 30.9 1.8 14 1-14 291-304 (525)
487 1iqp_A RFCS; clamp loader, ext 68.2 2.4 8.2E-05 28.1 1.8 14 1-14 56-69 (327)
488 2oap_1 GSPE-2, type II secreti 68.2 2.2 7.6E-05 31.1 1.7 13 1-13 270-282 (511)
489 1qhl_A Protein (cell division 68.1 2 6.7E-05 28.0 1.3 13 1-13 37-49 (227)
490 3tqf_A HPR(Ser) kinase; transf 68.0 2.6 8.9E-05 26.7 1.7 14 1-14 26-39 (181)
491 3u61_B DNA polymerase accessor 68.0 2.4 8.3E-05 28.3 1.8 14 1-14 58-71 (324)
492 3hr8_A Protein RECA; alpha and 67.9 2.4 8.1E-05 29.5 1.7 13 1-13 71-83 (356)
493 3exa_A TRNA delta(2)-isopenten 67.8 2.6 9E-05 29.0 1.9 14 1-14 13-26 (322)
494 3bgw_A DNAB-like replicative h 67.7 2.3 7.9E-05 30.4 1.7 14 1-14 207-220 (444)
495 1svm_A Large T antigen; AAA+ f 67.7 2.5 8.4E-05 29.7 1.8 13 1-13 179-191 (377)
496 3io5_A Recombination and repai 67.6 2.4 8.2E-05 29.4 1.7 13 1-13 38-50 (333)
497 1zcb_A G alpha I/13; GTP-bindi 67.5 2.2 7.7E-05 29.6 1.6 15 96-110 326-340 (362)
498 3a8t_A Adenylate isopentenyltr 67.4 2.7 9.1E-05 29.2 1.9 14 1-14 50-63 (339)
499 3eie_A Vacuolar protein sortin 67.2 2.6 8.7E-05 28.4 1.8 13 1-13 61-73 (322)
500 1um8_A ATP-dependent CLP prote 67.1 2.6 8.7E-05 29.0 1.8 13 1-13 82-94 (376)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.98 E-value=9e-33 Score=182.14 Aligned_cols=110 Identities=21% Similarity=0.352 Sum_probs=86.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+.||+.+.|...|.||+|.+|. +.+.+++..++++||||+||++|+.+++.||+++++++++++
T Consensus 23 ~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~ 102 (216)
T 4dkx_A 23 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQ 102 (216)
T ss_dssp TSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHH
Confidence 79999999999999999999999999874 778889999999999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhh--hhch------hc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MIGF------RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~~~------~~--~~~~~e~SAk~~~n~ 110 (111)
..++.+++++|||+|+.. .+.. +. ++.|+|||||+|.|+
T Consensus 103 ~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 103 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp THHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCH
Confidence 334567999999999954 2222 22 889999999999996
No 2
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=4.9e-26 Score=148.99 Aligned_cols=109 Identities=27% Similarity=0.472 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|+.+.|...+.||++..+.+.+.+++..+.++|||++|+++|+.+++.+++++|+++++++
T Consensus 37 ~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 116 (214)
T 3q3j_B 37 QCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDS 116 (214)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHH
Confidence 79999999999999999999999999998788888999999999999999999999999999999877765
Q ss_pred -----------hcCCccEEecccccchhhh--------------hchh------c--cC-ceEEcccccccC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGFR------D--RL-LWGSKQAREEKN 109 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~~------~--~~-~~~e~SAk~~~n 109 (111)
..++.+++++|||+|+... +... . ++ .|+|+||++|.|
T Consensus 117 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g 188 (214)
T 3q3j_B 117 ALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 188 (214)
T ss_dssp HHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcc
Confidence 2335679999999999531 2221 1 67 899999999986
No 3
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.93 E-value=4e-25 Score=142.02 Aligned_cols=110 Identities=33% Similarity=0.526 Sum_probs=94.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.+...+.||++..+...+.+++..+.+++||++|+++|..+++.+++++|+++++++
T Consensus 33 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 112 (194)
T 3reg_A 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDN 112 (194)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999998888889999999999999999999999999999999777665
Q ss_pred -----------hcCCccEEecccccchhh----hhch------hc--cCc-eEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQ----MIGF------RD--RLL-WGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~----~~~~------~~--~~~-~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+.. .+.. +. ++. ++++||++|.|+
T Consensus 113 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 113 ISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp HHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 234567999999999942 1211 11 666 999999999985
No 4
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=5.9e-25 Score=139.52 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.+...+.||++..+...+.+++..+.+++||++|+++|..++..+++++|+++++++
T Consensus 16 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 95 (181)
T 3t5g_A 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 95 (181)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999988788889999999999999999999999999999999777655
Q ss_pred ------------hcCCccEEecccccchhh--------hhchhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. ...++. ++.++++||++|.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 96 IKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA 156 (181)
T ss_dssp HHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCH
Confidence 123556999999999842 112222 788999999999874
No 5
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.92 E-value=9.9e-25 Score=141.88 Aligned_cols=110 Identities=49% Similarity=0.739 Sum_probs=91.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.+|..+.|...+.||++..+...+.+++..+.++|||++|+++|+.+++.+++++|+++++++
T Consensus 19 ~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~ 98 (212)
T 2j0v_A 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYEN 98 (212)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887778888999999999999999999999999999999777665
Q ss_pred -----------hcCCccEEecccccchhhhhc----------h------hc--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIG----------F------RD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~----------~------~~--~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+..... . +. ++ .|+++||++|+|+
T Consensus 99 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 167 (212)
T 2j0v_A 99 VLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNV 167 (212)
T ss_dssp HHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCH
Confidence 123567999999999954321 1 11 54 8999999999985
No 6
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=139.81 Aligned_cols=110 Identities=42% Similarity=0.633 Sum_probs=85.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+...+.+++..+.+++||++|+++|+.+++.+++++|+++++++
T Consensus 30 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 109 (201)
T 2q3h_A 30 AVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQN 109 (201)
T ss_dssp TSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887788889999999999999999999999999999999776665
Q ss_pred -----------hcCCccEEecccccchhhh--------------hc------hhc--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IG------FRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~------~~~--~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+... +. ++. ++ .|+++||++|.|+
T Consensus 110 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 182 (201)
T 2q3h_A 110 VSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182 (201)
T ss_dssp HHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCH
Confidence 2236679999999999642 11 111 44 8999999999985
No 7
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=8.9e-25 Score=140.27 Aligned_cols=110 Identities=47% Similarity=0.677 Sum_probs=93.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+.+.+.+++..+.+++||++|+++|+.+++.+++++|+++++++
T Consensus 28 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 107 (194)
T 2atx_A 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQN 107 (194)
T ss_dssp TSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999887778888889999999999999999999999999999776664
Q ss_pred -----------hcCCccEEecccccchhhh--------------hchhc--------cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGFRD--------RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~~~--------~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+... +...+ ++ .|+++||++|+|+
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 180 (194)
T 2atx_A 108 VKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGL 180 (194)
T ss_dssp HHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCH
Confidence 2336679999999999532 21111 44 8999999999985
No 8
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.92 E-value=1e-24 Score=139.17 Aligned_cols=110 Identities=32% Similarity=0.527 Sum_probs=92.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+.+.+.+++..+.+.+||++|+++|..+++.+++++++++++++
T Consensus 17 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 96 (184)
T 1m7b_A 17 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDS 96 (184)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999987778888899999999999999999999999999998766655
Q ss_pred -----------hcCCccEEecccccchhhh--------------hc------hhc--c-CceEEcccc-cccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IG------FRD--R-LLWGSKQAR-EEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~------~~~--~-~~~~e~SAk-~~~n~ 110 (111)
..++.+++++|||+|+... +. ++. + +.|+++||+ .|.|+
T Consensus 97 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi 170 (184)
T 1m7b_A 97 VLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSV 170 (184)
T ss_dssp HHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCH
Confidence 1245679999999999631 22 121 3 689999999 57664
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.6e-24 Score=140.79 Aligned_cols=110 Identities=26% Similarity=0.441 Sum_probs=92.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||+++|+.+.|...+.||++.++. +.+.+++..+.+++||++|+++|+.++..+++++|+++++++.
T Consensus 36 ~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~ 115 (201)
T 2ew1_A 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFR 115 (201)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 6788899999999999999999999999999999997777651
Q ss_pred -------------cCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+... + .++. ++.++++||++|.|+
T Consensus 116 ~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 116 CLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNV 176 (201)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 134568999999999531 1 1111 788999999999985
No 10
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.91 E-value=1.9e-24 Score=138.53 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=88.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|+.+.|...+.||++..+...+.+++..+.++|||++|+++|+.+ ..+++++++++++++
T Consensus 31 ~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~ 109 (187)
T 3c5c_A 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDS 109 (187)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHH
T ss_pred CCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHH
Confidence 7999999999999999999999999998777888999999999999999999886 679999998766665
Q ss_pred ----------h----cCCccEEecccccchhhh--hc------hhc--cCceEEccc-ccccCC
Q psy13093 72 ----------H----AGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQA-REEKNE 110 (111)
Q Consensus 72 ----------~----~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SA-k~~~n~ 110 (111)
. ..+.++++++||+|+... +. ++. ++.|+++|| ++|.|+
T Consensus 110 ~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 110 SSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp HHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 1 156679999999999532 21 111 788999999 898875
No 11
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.91 E-value=2.1e-24 Score=140.60 Aligned_cols=110 Identities=32% Similarity=0.527 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+.+.+.+++..+.++|||++|+++|..+++.+++++++++++++
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~ 117 (205)
T 1gwn_A 38 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDS 117 (205)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999887777888889999999999999999999999999998766654
Q ss_pred -----------hcCCccEEecccccchhhh--------------hc------hhc--c-CceEEcccc-cccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IG------FRD--R-LLWGSKQAR-EEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~------~~~--~-~~~~e~SAk-~~~n~ 110 (111)
..++.+++++|||+|+... +. ++. + +.|+++||+ +|.|+
T Consensus 118 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv 191 (205)
T 1gwn_A 118 VLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSV 191 (205)
T ss_dssp HHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCH
Confidence 1245679999999999631 11 121 4 689999999 57664
No 12
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.91 E-value=5.7e-24 Score=135.06 Aligned_cols=110 Identities=61% Similarity=0.887 Sum_probs=92.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+...+.+++..+.+++||++|+++|..++..+++++|+++++++
T Consensus 15 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 94 (186)
T 1mh1_A 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94 (186)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHH
Confidence 79999999999999999999999998887778889999999999999999999999999999998766665
Q ss_pred -----------hcCCccEEecccccchhhh--------------hc------hhc--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IG------FRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~------~~~--~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+... +. ++. ++ .++++||++|.|+
T Consensus 95 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 167 (186)
T 1mh1_A 95 VRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167 (186)
T ss_dssp HHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCH
Confidence 2236679999999999532 11 111 44 8999999999985
No 13
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=140.53 Aligned_cols=110 Identities=23% Similarity=0.369 Sum_probs=83.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++.++ .+.+.+++..+.++|||++|+++|+.++..+++++|+++++++
T Consensus 39 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~ 118 (201)
T 2hup_A 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFL 118 (201)
T ss_dssp TSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHH
T ss_pred CCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHH
Confidence 7999999999999999999999999887 4678888889999999999999999999999999999877765
Q ss_pred -----------h-cCCccEEecccccchhhh--hc------hhc--cC-ceEEcccccccCC
Q psy13093 72 -----------H-AGHPVRFPRGRKIRIMQM--IG------FRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~-~~~~~~~~~gnk~dl~~~--~~------~~~--~~-~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+... +. ++. ++ .++++||++|.|+
T Consensus 119 ~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 119 SVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 1 145668999999999541 11 122 66 8999999999985
No 14
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=140.98 Aligned_cols=110 Identities=38% Similarity=0.589 Sum_probs=71.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+...+.+++..+.++|||++|+++|..+++.+++++|+++++++
T Consensus 44 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 123 (214)
T 2j1l_A 44 GCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDN 123 (214)
T ss_dssp TSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHH
Confidence 79999999999999999999999998887788889999999999999999999999999999998777665
Q ss_pred -----------hcCCccEEecccccchhhhh--------------------chhc--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMI--------------------GFRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~--------------------~~~~--~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+.... .++. ++ .++++||++|.|+
T Consensus 124 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 196 (214)
T 2j1l_A 124 IFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV 196 (214)
T ss_dssp HHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 12356799999999995421 1111 54 8999999999985
No 15
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=3.2e-24 Score=135.55 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=93.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||++..+.+.+.+++..+.+.+||++|+++|..++..+++++++++++++
T Consensus 19 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 98 (181)
T 2fn4_A 19 GVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNE 98 (181)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHH
Confidence 79999999999999999999999999988778889999999999999999999999999999998776664
Q ss_pred ------------hcCCccEEecccccchhhhhc--------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... +.. ++.++++||++|.|+
T Consensus 99 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 99 VGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp HHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 123556999999999954211 111 778999999999885
No 16
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=139.40 Aligned_cols=110 Identities=25% Similarity=0.234 Sum_probs=89.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+++|..+.|...+.||++..+...+.+++..+.+.+||++|+++|..++..+++++|+++++++.
T Consensus 34 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 113 (201)
T 3oes_A 34 CVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQV 113 (201)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHH
T ss_pred CcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHH
Confidence 799999999999999999999999998877777788899999999999999999999999999997776651
Q ss_pred -------------cCCccEEecccccchhhhh--c------hhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMI--G------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~--~------~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.... . ++. ++.++++||++|.|+
T Consensus 114 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 114 IESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLT 174 (201)
T ss_dssp HHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 2345799999999985321 1 111 789999999999875
No 17
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.91 E-value=5.8e-24 Score=137.55 Aligned_cols=110 Identities=43% Similarity=0.678 Sum_probs=92.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.+...+.||++..+...+.+++..+.+.|||++|+++|..++..+++++|+++++++
T Consensus 35 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 114 (201)
T 2gco_A 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN 114 (201)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999987778889999999999999999999999999999998776654
Q ss_pred -----------hcCCccEEecccccchhhh--------------hchh------c--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGFR------D--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~~------~--~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+... +... . ++ .++++||++|.|+
T Consensus 115 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 187 (201)
T 2gco_A 115 IPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV 187 (201)
T ss_dssp HHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCH
Confidence 2236679999999999532 1111 1 34 7999999999985
No 18
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=7.3e-24 Score=132.87 Aligned_cols=110 Identities=26% Similarity=0.407 Sum_probs=85.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||++++..+.+...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++.+.+.
T Consensus 16 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 95 (170)
T 1z08_A 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95 (170)
T ss_dssp TSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998875 6777888999999999999999999999999999987776651
Q ss_pred -------------cCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+... +. +.. ++.++++||++|.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 96 KVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGI 156 (170)
T ss_dssp HHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 134568999999999542 11 111 678999999999985
No 19
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.91 E-value=2.3e-24 Score=134.65 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=92.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||++..+.+.+.+++..+.+.+||++|++++..+++.+++++++++.+++
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 92 (167)
T 1c1y_A 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND 92 (167)
T ss_dssp TSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHT
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999888777888889999999999999999999999999998766664
Q ss_pred ------------hcCCccEEecccccchhhh--------hchhc---cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--------IGFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--------~~~~~---~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... ..... ++.++++||++|.|+
T Consensus 93 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 93 LQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154 (167)
T ss_dssp HHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCH
Confidence 1235679999999999532 11111 578999999999985
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.91 E-value=8.2e-24 Score=133.67 Aligned_cols=110 Identities=27% Similarity=0.432 Sum_probs=90.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.|+++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++++++
T Consensus 19 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 98 (181)
T 3tw8_B 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFV 98 (181)
T ss_dssp TSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998875 677889999999999999999999999999999998777665
Q ss_pred -----------hcCCccEEecccccchhhhh--------chhc--cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+.... .... +++++++||++|.|+
T Consensus 99 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 99 NVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNV 158 (181)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 33456789999999985321 1111 789999999999985
No 21
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.91 E-value=3.8e-24 Score=135.97 Aligned_cols=110 Identities=22% Similarity=0.286 Sum_probs=93.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.+...+.||++..+...+.+++..+.+++||++|+++|..+++.+++++|+++++++
T Consensus 28 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 107 (183)
T 3kkq_A 28 GVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107 (183)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999988788889999999999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhh--hh------chhc--cCceEEcccc-cccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MI------GFRD--RLLWGSKQAR-EEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~------~~~~--~~~~~e~SAk-~~~n~ 110 (111)
...+.++++++||+|+.. .+ .++. +++++++||+ +|.|+
T Consensus 108 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 108 VDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp HHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence 124456999999999843 11 1222 7899999999 99885
No 22
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=9.3e-25 Score=138.80 Aligned_cols=110 Identities=25% Similarity=0.437 Sum_probs=63.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++.++. +.+.+++..+.+++||++|+++|..+++.+++++|+++++++
T Consensus 18 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 97 (183)
T 2fu5_C 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 97 (183)
T ss_dssp CC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHH
Confidence 79999999999999999899999998875 677889999999999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhh--hh------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MI------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. .+ .+.. ++.++++||++|.|+
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 98 NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV 158 (183)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 123557999999999953 11 1111 788999999999985
No 23
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=6e-24 Score=136.34 Aligned_cols=110 Identities=27% Similarity=0.383 Sum_probs=88.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++.++. +.+.+++..+.++|||++|+++|..++..+++++++++++++
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 110 (191)
T 2a5j_A 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 110 (191)
T ss_dssp TSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999999889999998875 678889999999999999999999999999999999777765
Q ss_pred ------------hcCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... +. +.. ++.++++||++|.|+
T Consensus 111 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 111 HLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1235568999999999531 11 111 788999999999985
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.90 E-value=1.4e-23 Score=131.26 Aligned_cols=110 Identities=25% Similarity=0.409 Sum_probs=92.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++.+.+
T Consensus 15 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 94 (168)
T 1z2a_A 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE 94 (168)
T ss_dssp TSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998874 677888889999999999999999999999999998776665
Q ss_pred -----------hcCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... + .... ++.++++||++|.|+
T Consensus 95 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 95 AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154 (168)
T ss_dssp THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 1246679999999999541 1 1111 788999999999986
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.90 E-value=1.1e-23 Score=133.99 Aligned_cols=110 Identities=24% Similarity=0.325 Sum_probs=92.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++++++
T Consensus 20 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 99 (186)
T 2bme_A 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 99 (186)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998874 677888889999999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... +. ... ++.++++||++|.|+
T Consensus 100 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 100 ALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENV 160 (186)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 1245569999999999531 11 111 778999999999885
No 26
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.90 E-value=1.1e-23 Score=136.73 Aligned_cols=110 Identities=59% Similarity=0.891 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.+|+.+.+...+.||++..+...+.+++..+.++|||++|+++|..++..+++++|+++++++
T Consensus 40 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 119 (204)
T 4gzl_A 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119 (204)
T ss_dssp TSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998888888889999999999999999999999999999999777665
Q ss_pred -----------hcCCccEEecccccchhhhhc--------------hhc--------c-CceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIG--------------FRD--------R-LLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~--------------~~~--------~-~~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+..... ..+ + .+++++||++|.|+
T Consensus 120 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 192 (204)
T 4gzl_A 120 VRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192 (204)
T ss_dssp HHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCH
Confidence 223667999999999954211 111 3 35999999999985
No 27
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.90 E-value=1.3e-23 Score=135.99 Aligned_cols=110 Identities=25% Similarity=0.517 Sum_probs=93.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++.++. ..+.+++..+.+.+||++|+++|+.++..+++++|+++++++
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~ 97 (206)
T 2bcg_Y 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97 (206)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999999885 677889999999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... + .+.. ++.++++||++|.|+
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 98 GVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 158 (206)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 1234568999999999531 1 1111 678999999999885
No 28
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=1.1e-23 Score=131.75 Aligned_cols=110 Identities=25% Similarity=0.394 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.|+++..+. +.+.+++..+.+.+||++|+++|..++..+++++|+++.+++
T Consensus 16 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 95 (170)
T 1r2q_A 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 677788889999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+... + .+.. ++.++++||++|.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 96 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 1235568999999999532 1 1111 678999999999985
No 29
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-23 Score=137.92 Aligned_cols=110 Identities=25% Similarity=0.365 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.|...+.||++.++. ..+.+++..+.++|||++|+++|..++..+++++++++++++
T Consensus 23 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~ 102 (223)
T 3cpj_B 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYE 102 (223)
T ss_dssp TSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHH
Confidence 79999999999999999999999998885 677888989999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... + .+.. ++.++++||++|.|+
T Consensus 103 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 103 NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENV 163 (223)
T ss_dssp HHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCH
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1235568999999999532 1 1111 678999999999985
No 30
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.90 E-value=6.7e-25 Score=140.42 Aligned_cols=109 Identities=19% Similarity=0.104 Sum_probs=87.8
Q ss_pred CcchHHHHHHHHhCCCCCC-----------CCCceeeeeE-EEE-EECCeeEEEEEEeCCCcccccccCcccccCCceee
Q psy13093 1 AVGKTCLLISYTTNAFPGE-----------YIPTVFDNYS-ANV-MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~-----------~~~t~~~~~~-~~i-~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~ 67 (111)
|||||||+ +++.+.|... +.||++.++. ..+ .+++..+.++|||++|+++|+.+++.+++++|+++
T Consensus 24 ~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 102 (198)
T 3t1o_A 24 LSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIV 102 (198)
T ss_dssp TSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEE
T ss_pred CCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEE
Confidence 79999999 7777778766 4568888774 344 56788999999999999999999999999999987
Q ss_pred eehhhc-------------------------CCccEEecccccchhhhhchhc--------cC-ceEEcccccccCC
Q psy13093 68 SFALHA-------------------------GHPVRFPRGRKIRIMQMIGFRD--------RL-LWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~~~-------------------------~~~~~~~~gnk~dl~~~~~~~~--------~~-~~~e~SAk~~~n~ 110 (111)
++++.. .+.++++++||+|+...+...+ ++ .++++||++|.|+
T Consensus 103 ~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 179 (198)
T 3t1o_A 103 FVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGV 179 (198)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTH
T ss_pred EEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCH
Confidence 766522 5667999999999955333222 66 8999999999985
No 31
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.90 E-value=1.2e-24 Score=137.90 Aligned_cols=110 Identities=47% Similarity=0.729 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+...+.+++..+.+++||++|+++|+.++..+++++|+++++++
T Consensus 18 ~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 97 (182)
T 3bwd_D 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN 97 (182)
T ss_dssp TSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998876556677888999999999999999999999999998766665
Q ss_pred -----------hcCCccEEecccccchhhhhc------------------hhc--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMIG------------------FRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~~------------------~~~--~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+..... ++. ++ .|+++||++|.|+
T Consensus 98 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (182)
T 3bwd_D 98 VSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENV 168 (182)
T ss_dssp HHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCH
Confidence 123567999999999954322 111 54 8999999999985
No 32
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.90 E-value=1.8e-23 Score=133.82 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=92.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.|...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++++++
T Consensus 32 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 111 (189)
T 2gf9_A 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFA 111 (189)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHH
Confidence 79999999999999999899999998875 677788889999999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhhh--------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... .++. ++.++++||++|.|+
T Consensus 112 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 112 AVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV 172 (189)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 11356799999999995421 1111 778999999999885
No 33
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.90 E-value=2e-24 Score=136.48 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=90.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECC-eeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDG-KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~-~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||++++..+.|...+.||++.++ .+.+.+++ ..+.+++||++|+++|..+++.+++++|+++.+++
T Consensus 16 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 95 (178)
T 2hxs_A 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSF 95 (178)
T ss_dssp TSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHH
Confidence 7999999999999999888899998776 46777876 68999999999999999999999999999777765
Q ss_pred -----------h-----cCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 -----------H-----AGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~-----~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ...+++++++||+|+... + .+.. ++.++++||++|.|+
T Consensus 96 ~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 96 ENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV 160 (178)
T ss_dssp HTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred HHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence 1 133447899999999542 1 1111 788999999999985
No 34
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.5e-23 Score=131.20 Aligned_cols=110 Identities=25% Similarity=0.417 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.|+++..+. ..+.+++..+.+.+||++|++++..++..+++++|+++.+.+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 92 (170)
T 1ek0_A 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFI 92 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHH
Confidence 79999999999999999999999998874 677888999999999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhh-----hc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM-----IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~-----~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... +. ... ++.++++||++|.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 93 KARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156 (170)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1235568999999999532 11 111 778999999999885
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=6.8e-24 Score=132.34 Aligned_cols=110 Identities=25% Similarity=0.382 Sum_probs=90.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||.+..+...+.+++..+.+.+||++|++++..+++.+++++++++.+++
T Consensus 14 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 93 (168)
T 1u8z_A 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 93 (168)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999887777889999999999999999999999999999999777665
Q ss_pred ----------h--cCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ----------H--AGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------~--~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+... +. ... ++.++++||++|.|+
T Consensus 94 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T 1u8z_A 94 TADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154 (168)
T ss_dssp HHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence 1 125679999999999532 11 111 778999999999885
No 36
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=5.9e-24 Score=134.57 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=85.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|.. +.||++..+.+.+.+++..+.+++||++|+++ ..|++++|+++++++
T Consensus 17 ~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~ 90 (178)
T 2iwr_A 17 RSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQA 90 (178)
T ss_dssp GGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHH
Confidence 699999999999999987 88999988888888899999999999999987 468889998777665
Q ss_pred ---------h-----cCCccEEecccccchh----hhh------chhc---cCceEEcccccccCC
Q psy13093 72 ---------H-----AGHPVRFPRGRKIRIM----QMI------GFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~-----~~~~~~~~~gnk~dl~----~~~------~~~~---~~~~~e~SAk~~~n~ 110 (111)
. .++.+++++|||+|+. +.+ .+.. ++.++++||++|.|+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 91 VSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp HHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 0 1456799999999982 111 1211 578999999999885
No 37
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.7e-23 Score=134.96 Aligned_cols=110 Identities=42% Similarity=0.669 Sum_probs=85.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||++..+...+.+++..+.+.|||++|++++..++..+++++|+++++++
T Consensus 35 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 114 (207)
T 2fv8_A 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLEN 114 (207)
T ss_dssp TSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999887677889999999999999999999999999999998776654
Q ss_pred -----------hcCCccEEecccccchhhh--------------hchhc--------cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGFRD--------RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~~~--------~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+... +...+ ++ .++++||++|.|+
T Consensus 115 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 187 (207)
T 2fv8_A 115 IPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGV 187 (207)
T ss_dssp HHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCH
Confidence 2235679999999999542 11111 33 7899999999885
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.90 E-value=2.4e-23 Score=130.34 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.|+++..+. ..+.+++..+.+.+||++|++++..++..+++++|+++.+.+
T Consensus 16 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 95 (170)
T 1z0j_A 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFS 95 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998874 677788889999999999999999999999999998766665
Q ss_pred ------------hcCCccEEecccccchhhhhc--------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~~~n~ 110 (111)
..+..++++++||+|+..... ... ++.++++||++|.|+
T Consensus 96 ~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 96 TLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAINI 156 (170)
T ss_dssp HHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 234556899999999953211 111 678999999999885
No 39
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.90 E-value=5.3e-24 Score=132.71 Aligned_cols=110 Identities=23% Similarity=0.310 Sum_probs=92.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||++..+.+.+.+++..+.+++||++|++++..++..+++++++++.+++
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 92 (167)
T 1kao_A 13 GVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD 92 (167)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHH
Confidence 79999999999999999999999998887788889999999999999999999999999999998766654
Q ss_pred ------------hcCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... ..+.. +++++++||++|.|+
T Consensus 93 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 93 IKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMV 153 (167)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCH
Confidence 1135679999999998532 11111 788999999999874
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=135.17 Aligned_cols=110 Identities=23% Similarity=0.369 Sum_probs=93.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.|...+.||++..+. +.+.+++..+.+++||++|+++|..++..+++++|+++++++
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 97 (203)
T 1zbd_A 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFN 97 (203)
T ss_dssp TSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998875 677788899999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... + .++. ++.++++||++|.|+
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 98 AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINV 158 (203)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 1145679999999999532 1 1112 778999999999986
No 41
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.90 E-value=9.5e-24 Score=135.19 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=84.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|+.+.|...+.|| +..+.+.+.+++..+.++|||++|+++|+ +++++++++++++
T Consensus 30 ~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~ 103 (184)
T 3ihw_A 30 SSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQT 103 (184)
T ss_dssp TSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHH
Confidence 79999999999999999999998 45667888899999999999999999988 8889998776653
Q ss_pred ---------h---cCCccEEecccccchh----hhh------chhc--c-CceEEcccccccCC
Q psy13093 72 ---------H---AGHPVRFPRGRKIRIM----QMI------GFRD--R-LLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~---~~~~~~~~~gnk~dl~----~~~------~~~~--~-~~~~e~SAk~~~n~ 110 (111)
. ..+.+++++|||+|+. +.+ .++. + +.|+++||++|.|+
T Consensus 104 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 104 VYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp HHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 1 1355699999999983 222 2222 3 78999999999985
No 42
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=134.43 Aligned_cols=110 Identities=25% Similarity=0.473 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||++++..+.+...+.|+++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++++++.
T Consensus 26 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 105 (196)
T 3tkl_A 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 105 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998875 6788899999999999999999999999999999998777651
Q ss_pred -------------cCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+... ..+.. +++++++||++|.|+
T Consensus 106 ~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 106 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 166 (196)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence 124568999999999432 11222 789999999999985
No 43
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.90 E-value=2e-23 Score=131.63 Aligned_cols=110 Identities=21% Similarity=0.326 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++++.+.+...+.|+++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++.+++
T Consensus 24 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 103 (179)
T 2y8e_A 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFH 103 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998774 677889999999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhhhhc--hh------c--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG--FR------D--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~--~~------~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... .. . ++.++++||++|.|+
T Consensus 104 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 104 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 164 (179)
T ss_dssp THHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 113556899999999953211 11 1 788999999999885
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.90 E-value=2.7e-23 Score=131.55 Aligned_cols=110 Identities=21% Similarity=0.351 Sum_probs=92.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++..+. ..+.+++..+.+.+||++|++++..++..+++++|+++++++
T Consensus 22 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 101 (181)
T 2efe_B 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFE 101 (181)
T ss_dssp TSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 677788889999999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+... + .+.. ++.++++||++|.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 102 RAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 1235669999999999431 1 1111 778999999999885
No 45
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.90 E-value=1.2e-23 Score=133.81 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=90.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||.+..+...+.+++..+.+++||++|++++..+++.+++++++++++++
T Consensus 14 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 93 (189)
T 4dsu_A 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 93 (189)
T ss_dssp TSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999988887888889999999999999999999999999999998766665
Q ss_pred ------------hcCCccEEecccccchhh-------hhchhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ-------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~-------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. ...++. +++++++||++|.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 94 IHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGV 153 (189)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 123567999999999942 111222 788999999999885
No 46
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=3e-23 Score=133.26 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||++++..+.|...+.||++..+. ..+.+++..+.+.+||++|++++..++..+++++++++++++.
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~ 112 (192)
T 2fg5_A 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFY 112 (192)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHH
Confidence 79999999999999998899999999875 5677788899999999999999999999999999987776651
Q ss_pred -------------cCCccEEecccccchhh--hhch------hc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQ--MIGF------RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~--~~~~------~~--~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.. .+.. .. ++.++++||++|.|+
T Consensus 113 ~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 113 TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINI 173 (192)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 13566999999999953 1111 11 678999999999885
No 47
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.90 E-value=1.7e-23 Score=132.00 Aligned_cols=110 Identities=26% Similarity=0.387 Sum_probs=92.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++.+++
T Consensus 25 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 104 (179)
T 1z0f_A 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 104 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHH
Confidence 79999999999999999999999998874 677788899999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... + .+.. ++.++++||++|.|+
T Consensus 105 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 105 HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENV 165 (179)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1145569999999999532 1 1111 678999999999985
No 48
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=136.05 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=81.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|..+.+...+.||++.++. ..+.+++..+.+.|||++|+++|..++..+++++|+++++++
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 114 (200)
T 2o52_A 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 114 (200)
T ss_dssp TSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998874 677788889999999999999999999999999999877665
Q ss_pred ------------hcCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... +. ... ++.++++||++|.|+
T Consensus 115 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 115 SLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV 175 (200)
T ss_dssp THHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1135569999999999531 11 111 778999999999985
No 49
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=131.28 Aligned_cols=110 Identities=21% Similarity=0.280 Sum_probs=91.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||++..+...+..++..+.+.+||++|++++..++..+++.+|+++.+.+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 92 (172)
T 2erx_A 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEE 92 (172)
T ss_dssp TSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHT
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHH
Confidence 79999999999999999899999998887777788889999999999999999999999999998766654
Q ss_pred -------------hcCCccEEecccccchhhhhc--------hhc--cCceEEcccccccCC
Q psy13093 72 -------------HAGHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+..... ... ++.++++||++|.|+
T Consensus 93 ~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (172)
T 2erx_A 93 LKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNV 154 (172)
T ss_dssp THHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCH
Confidence 113567999999999953211 111 678999999999885
No 50
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=135.53 Aligned_cols=110 Identities=24% Similarity=0.376 Sum_probs=93.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||++..+...+.+++..+.+.+||++|++++..++..+++++++++++++
T Consensus 24 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 103 (206)
T 2bov_A 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 103 (206)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999999887778889999999999999999999999999999998777664
Q ss_pred ----------h--cCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ----------H--AGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------~--~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+... +. ... ++.++++||++|.|+
T Consensus 104 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 104 TADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164 (206)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 1 125679999999999542 11 111 778999999999885
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.90 E-value=1.3e-23 Score=134.38 Aligned_cols=110 Identities=27% Similarity=0.404 Sum_probs=92.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCccccc-ccCcccccCCceeeeehhh------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYD-RLRPLSYPQTWSLRSFALH------ 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~-~~~~~~~~~a~~~~~~~~~------ 72 (111)
|||||||+++|..+.+...+.||++.++. ..+.+++..+.+.+||++|+++|. .++..+++++|+++++++.
T Consensus 30 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~ 109 (189)
T 1z06_A 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASF 109 (189)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHH
Confidence 79999999999999999999999998874 677888989999999999999998 8999999999987776651
Q ss_pred ---------------cCCccEEecccccchhhhh--------chhc--cCceEEcccccc---cCC
Q psy13093 73 ---------------AGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREE---KNE 110 (111)
Q Consensus 73 ---------------~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~---~n~ 110 (111)
..+.++++++||+|+.... .++. ++.++++||++| .|+
T Consensus 110 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 110 HSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp HTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 2455699999999995321 1111 678999999999 764
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=132.82 Aligned_cols=110 Identities=27% Similarity=0.334 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++..+. +.+.+++..+.+.+||++|+++|..++..+++++++++++++
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~ 114 (193)
T 2oil_A 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA 114 (193)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999999899999998875 677788899999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhhhh--c------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--G------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--~------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... . +.. ++.++++||++|.|+
T Consensus 115 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 115 VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNV 175 (193)
T ss_dssp THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 11345689999999995421 1 111 678999999999885
No 53
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.5e-23 Score=137.59 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=83.2
Q ss_pred CcchHHHHHHHHhC--CCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccc-ccccCcccccCCceeeeehh-----
Q psy13093 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTWSLRSFAL----- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~-~~~~~~~~~~~a~~~~~~~~----- 71 (111)
|||||||++||+.. .|...+ |++|.++ .+.+.+++..+.+.+|||+|++. ++.+++.|++.+++++++++
T Consensus 47 ~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~ 125 (211)
T 2g3y_A 47 GVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA 125 (211)
T ss_dssp TSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH
T ss_pred CCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH
Confidence 79999999999964 345554 4567665 57788899999999999999988 67788899999998766654
Q ss_pred ----------------hcCCccEEecccccchhhh--hchhc--------cCceEEcccccccCC
Q psy13093 72 ----------------HAGHPVRFPRGRKIRIMQM--IGFRD--------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------------~~~~~~~~~~gnk~dl~~~--~~~~~--------~~~~~e~SAk~~~n~ 110 (111)
...+.+++++|||+|+... +...+ ++.|+||||++|.|+
T Consensus 126 sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 126 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1135679999999999532 22111 678999999999986
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=8.2e-24 Score=136.56 Aligned_cols=110 Identities=24% Similarity=0.322 Sum_probs=82.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.|...+.||++.++. +.+.+++..+.++|||++|+++|..++..+++++|+++++++
T Consensus 38 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~ 117 (199)
T 2p5s_A 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFL 117 (199)
T ss_dssp TSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHH
Confidence 79999999999999999899999998875 678889999999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhhh--------hc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--------IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--------~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... +. ++. ++.++++||++|.|+
T Consensus 118 ~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 118 NIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp THHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 1135569999999999521 11 111 678999999999985
No 55
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=1.8e-23 Score=130.92 Aligned_cols=110 Identities=23% Similarity=0.408 Sum_probs=85.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++.+.+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 92 (170)
T 1g16_A 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFT 92 (170)
T ss_dssp TSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 677788889999999999999999999999999998777665
Q ss_pred ------------hcCCccEEecccccchhh-------hhchhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ-------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~-------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. ...++. +++++++||++|.|+
T Consensus 93 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 93 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNV 152 (170)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 113556899999999932 112222 788999999999885
No 56
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.9e-23 Score=132.16 Aligned_cols=110 Identities=27% Similarity=0.415 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.|...+.||++.++. +.+.+++..+.+.|||++|++++..++..+++++|+++++++
T Consensus 25 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 104 (195)
T 1x3s_A 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFV 104 (195)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998874 677889999999999999999999999999999998777665
Q ss_pred ----------h---cCCccEEecccccchhh-------hhchhc--cCceEEcccccccCC
Q psy13093 72 ----------H---AGHPVRFPRGRKIRIMQ-------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------~---~~~~~~~~~gnk~dl~~-------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.. ...+.. ++.++++||++|.|+
T Consensus 105 ~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 105 KLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp THHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 1 13456899999999932 111111 678999999999885
No 57
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.3e-23 Score=130.10 Aligned_cols=110 Identities=28% Similarity=0.410 Sum_probs=83.4
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||++++..+.+. ..+.||++.++. ..+.+++..+.+++||++|+++|..++..+++++|+++.+++
T Consensus 20 ~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 99 (180)
T 2g6b_A 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 99 (180)
T ss_dssp TSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHH
Confidence 79999999999999985 578899999885 566788999999999999999999999999999999777665
Q ss_pred ------------h-cCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 72 ------------H-AGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~-~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+... ..+.. ++.++++||++|.|+
T Consensus 100 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 100 DNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161 (180)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 1 145669999999999531 11221 788999999999885
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=2.4e-23 Score=132.14 Aligned_cols=110 Identities=24% Similarity=0.376 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.|...+.||++..+...+.+++..+.+.+||++|++++..++..+++++|+++++++
T Consensus 28 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 107 (187)
T 2a9k_A 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 107 (187)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHH
Confidence 79999999999999999999999999888778889999999999999999999999999999998777665
Q ss_pred ----------h--cCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 72 ----------H--AGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------~--~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+... +. ... ++.++++||++|.|+
T Consensus 108 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 108 TADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 168 (187)
T ss_dssp HHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence 1 125679999999999542 11 111 778999999999885
No 59
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.89 E-value=2e-23 Score=130.50 Aligned_cols=109 Identities=15% Similarity=0.072 Sum_probs=66.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++....+. ...|+.+..+.+.+.+++..+.+.+||++|+++++.+++.+++.+++++.+++
T Consensus 12 ~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 90 (166)
T 3q72_A 12 GVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEK 90 (166)
T ss_dssp TSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHH
Confidence 79999999999876654 45677888877788889999999999999999999999999999999766654
Q ss_pred ------------hcCCccEEecccccchhh--hh------chhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ--MI------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~--~~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. .+ ..+. +++++++||++|.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 91 ASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV 151 (166)
T ss_dssp HHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCH
Confidence 124567999999999942 11 1111 788999999999985
No 60
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=6.2e-24 Score=139.08 Aligned_cols=111 Identities=24% Similarity=0.268 Sum_probs=93.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++|+.+.|...+.||+|..+. ..+.+++..+.+.|||++|+++|..++..+++++++++++++
T Consensus 25 ~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 104 (221)
T 3gj0_A 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 104 (221)
T ss_dssp TSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHH
Confidence 79999999999999998999999998874 577788899999999999999999999999999999777665
Q ss_pred -----------hcCCccEEecccccchhhhh------chhc--cCceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQMI------GFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~~------~~~~--~~~~~e~SAk~~~n~~ 111 (111)
...+.++++++||+|+.... .+.. ++.++++||++|.|+.
T Consensus 105 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 105 NVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp THHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 22356799999999995321 1111 7889999999999874
No 61
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=4.6e-23 Score=130.05 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=88.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++.++ ...+.+++..+.+.+||++|++++..++..+++++++++.+++
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 96 (177)
T 1wms_A 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQ 96 (177)
T ss_dssp TSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHH
Confidence 7999999999999999999999999887 4677889999999999999999999999999999998766654
Q ss_pred -----------h-----cCCccEEecccccchhh-------hhchh---ccCceEEcccccccCC
Q psy13093 72 -----------H-----AGHPVRFPRGRKIRIMQ-------MIGFR---DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~-----~~~~~~~~~gnk~dl~~-------~~~~~---~~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.. ..... .++.++++||++|.|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 97 NLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp THHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 0 14557999999999842 11111 1678999999999985
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.89 E-value=1e-23 Score=135.53 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=84.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+.+...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++++++
T Consensus 36 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~ 115 (192)
T 2il1_A 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFD 115 (192)
T ss_dssp TSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHH
Confidence 79999999999999998889999998874 677888899999999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhhh--------chhc---cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI--------GFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~--------~~~~---~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... .++. ++.++++||++|.|+
T Consensus 116 ~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 116 DLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 11345689999999995321 1111 568999999999985
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.7e-23 Score=133.11 Aligned_cols=109 Identities=22% Similarity=0.238 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.|...+.||++..+.+.+.+++..+.+++||++|+++ ..++..+++++++++.+++
T Consensus 38 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~ 116 (196)
T 2atv_A 38 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEE 116 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHH
Confidence 799999999999999999999999998877788899999999999999999 8889999999998777665
Q ss_pred ------------hcCCccEEecccccchhhh--h------chhc--cCceEEccccccc-CC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEK-NE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~-n~ 110 (111)
...+.++++++||+|+... + .++. ++.++++||++|. |+
T Consensus 117 ~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 117 VLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI 178 (196)
T ss_dssp HHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence 1235569999999999542 1 1111 7889999999998 75
No 64
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=3e-23 Score=134.21 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=76.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||++++..+.+. .+.||++... ..+.+++ +.+++|||+|+++++.+++.|++++|+++.+++.
T Consensus 35 ~vGKSsLi~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~ 110 (198)
T 1f6b_A 35 NAGKTTLLHMLKDDRLG-QHVPTLHPTS-EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLE 110 (198)
T ss_dssp TSSHHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHH
T ss_pred CCCHHHHHHHHhcCCCC-ccCCCCCcee-EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 79999999999998885 5788988764 4556665 8999999999999999999999999997777651
Q ss_pred -------------cCCccEEecccccchhhhhchh-------------------------ccCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGFR-------------------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~~-------------------------~~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+...+... ..+.+++|||++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 186 (198)
T 1f6b_A 111 SKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186 (198)
T ss_dssp HHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSH
T ss_pred HHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCH
Confidence 2456799999999995421111 1356899999999985
No 65
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.8e-24 Score=137.25 Aligned_cols=110 Identities=23% Similarity=0.346 Sum_probs=92.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||+++|..+.|...+.||++..+. ..+.+++..+.++|||++|+++|..++..+++++|+++++++.
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 112 (191)
T 3dz8_A 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 112 (191)
T ss_dssp TSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHH
T ss_pred CcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999998875 6777888899999999999999999999999999998777651
Q ss_pred -------------cCCccEEecccccchhhh--hc------hhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQM--IG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~--~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+... +. ++. ++.++++||++|.|+
T Consensus 113 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 113 AVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV 173 (191)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 145679999999999432 11 111 789999999999985
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=1.6e-22 Score=131.09 Aligned_cols=110 Identities=25% Similarity=0.432 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||+++++.+.|...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++++++
T Consensus 30 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 109 (213)
T 3cph_A 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT 109 (213)
T ss_dssp TSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998875 677888989999999999999999999999999998777665
Q ss_pred -----------h-cCCccEEecccccchhh-------hhchhc--cCceEEcccccccCC
Q psy13093 72 -----------H-AGHPVRFPRGRKIRIMQ-------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~-~~~~~~~~~gnk~dl~~-------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.. ...++. +++++++||++|.|+
T Consensus 110 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 110 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNV 169 (213)
T ss_dssp THHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1 12456899999999932 122222 788999999999986
No 67
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.89 E-value=3.1e-23 Score=133.17 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=83.9
Q ss_pred CcchHHHHHHHHhCCCCC-CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc------
Q psy13093 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------ 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------ 73 (111)
|||||||+++|..+.|.. .+.||++..+.. ++...+.++|||++|+++|..++..+++++|+++++++..
T Consensus 27 ~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~ 103 (199)
T 4bas_A 27 NSGKTTIINQVKPAQSSSKHITATVGYNVET---FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLC 103 (199)
T ss_dssp TSCHHHHHHHHSCCC----CCCCCSSEEEEE---EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHH
T ss_pred CCCHHHHHHHHhcCCCcccccccccceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHH
Confidence 799999999999999988 899999955432 3456789999999999999999999999999987776511
Q ss_pred ----------------------CCccEEecccccchhhhh---chh-----------ccCceEEcccccccCC
Q psy13093 74 ----------------------GHPVRFPRGRKIRIMQMI---GFR-----------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 74 ----------------------~~~~~~~~gnk~dl~~~~---~~~-----------~~~~~~e~SAk~~~n~ 110 (111)
.+.++++++||+|+.... ... .++.++++||++|.|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 176 (199)
T 4bas_A 104 VVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGV 176 (199)
T ss_dssp HHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTH
T ss_pred HHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCH
Confidence 256699999999995431 111 2557899999999985
No 68
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.89 E-value=5.6e-23 Score=131.03 Aligned_cols=110 Identities=26% Similarity=0.366 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE--EEEEECCe---------eEEEEEEeCCCcccccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGK---------PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~--~~i~~~~~---------~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||++++..+.+...+.||++.++. +.+.+++. .+.+.+||++|++++..++..+++++|+++++
T Consensus 21 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 100 (195)
T 3bc1_A 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLL 100 (195)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEE
T ss_pred CCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 79999999999999999999999999875 45566665 79999999999999999999999999997776
Q ss_pred hh-------------------hc--CCccEEecccccchhhh--h------chhc--cCceEEcccccccCC
Q psy13093 70 AL-------------------HA--GHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~-------------------~~--~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~ 110 (111)
++ .. .+.++++++||+|+... + .+.. ++.++++||++|.|+
T Consensus 101 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 172 (195)
T 3bc1_A 101 FDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNI 172 (195)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 65 11 46679999999999542 1 1111 788999999999885
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.89 E-value=1.1e-22 Score=131.32 Aligned_cols=110 Identities=26% Similarity=0.372 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||++++..+.+...+.||++.++. ..+.+++..+.+.+||++|++++..++..+++++|+++++++.
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 97 (207)
T 1vg8_A 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97 (207)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHH
Confidence 79999999999999999999999998874 6777788899999999999999999999999999997776651
Q ss_pred ------------c-----CCccEEecccccchhh-------hhch---hccCceEEcccccccCC
Q psy13093 73 ------------A-----GHPVRFPRGRKIRIMQ-------MIGF---RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 ------------~-----~~~~~~~~gnk~dl~~-------~~~~---~~~~~~~e~SAk~~~n~ 110 (111)
. .+.++++++||+|+.. ...+ ..++.++++||++|.|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 98 TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp THHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 1 3456899999999952 1111 12678999999999985
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.88 E-value=2.5e-22 Score=128.34 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=82.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+++++++++
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 110 (190)
T 3con_A 31 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFAD 110 (190)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHH
Confidence 79999999999999999999999998887788889999999999999999999999999999998766654
Q ss_pred ------------hcCCccEEecccccchhh-------hhchhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQ-------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~-------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.. ...+.+ ++.++++||++|.|+
T Consensus 111 ~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 111 INLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp HHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 113567999999999843 111222 788999999999885
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=6.3e-23 Score=129.66 Aligned_cols=110 Identities=24% Similarity=0.261 Sum_probs=77.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeeeehhh------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------ 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------ 72 (111)
|||||||++++..+.+...+.||++.++. ..+.++ +..+.+.+||++|+++|..++..+++++|+++.+++.
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 97 (182)
T 1ky3_A 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSF 97 (182)
T ss_dssp TSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHH
T ss_pred CCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHH
Confidence 79999999999999999999999998874 566666 6678999999999999999999999999997776651
Q ss_pred ------------------cCCccEEecccccchhhh---------hchh---ccCceEEcccccccCC
Q psy13093 73 ------------------AGHPVRFPRGRKIRIMQM---------IGFR---DRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 ------------------~~~~~~~~~gnk~dl~~~---------~~~~---~~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+... ..++ .++.++++||++|.|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (182)
T 1ky3_A 98 ENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINV 165 (182)
T ss_dssp HTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred HHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCH
Confidence 145579999999999321 1111 1678999999999985
No 72
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.88 E-value=5.3e-23 Score=128.92 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=73.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccc-cCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDR-LRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~-~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||+++|....+...+.++.+.++ .+.+.+++..+.+.+||++|++++.. +++.+++++|+++.+++
T Consensus 12 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 91 (169)
T 3q85_A 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSF 91 (169)
T ss_dssp TSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHH
Confidence 7999999999998887766666666665 46778899999999999999999976 88899999998766665
Q ss_pred ------------hc--CCccEEecccccchhh--hhc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HA--GHPVRFPRGRKIRIMQ--MIG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~--~~~~~~~~gnk~dl~~--~~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
.. .+.++++++||+|+.. .+. .+. ++.++++||++|.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 92 SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 154 (169)
T ss_dssp HTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCH
Confidence 11 2567999999999953 111 111 788999999999985
No 73
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=5.5e-23 Score=131.97 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||++++..+.+...+.||++..+...+.+++..+.+.+||++|+++|..++..+++++|+++++++.
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 97 (199)
T 2gf0_A 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEE 97 (199)
T ss_dssp TSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHT
T ss_pred CCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHH
Confidence 799999999999999999999999988877777889999999999999999999999999999987666651
Q ss_pred --------------cCCccEEecccccchhh-h------hchhc--cCceEEcccccccCC
Q psy13093 73 --------------AGHPVRFPRGRKIRIMQ-M------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 --------------~~~~~~~~~gnk~dl~~-~------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.. . ..... ++.++++||++|.|+
T Consensus 98 ~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 98 LGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNV 158 (199)
T ss_dssp THHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCH
Confidence 13456999999999943 1 11111 678999999999885
No 74
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.88 E-value=2.4e-22 Score=129.09 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=85.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+. .+.||++... ..+.+++ +.+++||++|+++++.+++.+++++|+++.+++
T Consensus 33 ~vGKSsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 108 (190)
T 1m2o_B 33 NAGKTTLLHMLKNDRLA-TLQPTWHPTS-EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDE 108 (190)
T ss_dssp TSSHHHHHHHHHHSCCC-CCCCCCSCEE-EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHH
T ss_pred CCCHHHHHHHHhcCCCC-ccccCCCCCe-EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHH
Confidence 79999999999999885 5788888753 4556665 889999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhhhchh--------------------ccCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFR--------------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~--------------------~~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+...+... .++.++++||++|+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 109 ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred HHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCH
Confidence 12456799999999995422211 1356899999999985
No 75
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.88 E-value=3.1e-23 Score=132.82 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=86.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+.. ++...+.+.|||++|+++|..++..+++++|+++++++
T Consensus 32 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~ 108 (188)
T 1zd9_A 32 YSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEA 108 (188)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHH
T ss_pred CCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHH
Confidence 799999999999999998899999988753 33457889999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhhhc---hhc----------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG---FRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~---~~~----------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... ..+ ++.++++||++|.|+
T Consensus 109 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 109 SKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred HHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 124567999999999953211 111 346899999999985
No 76
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.88 E-value=3e-23 Score=135.29 Aligned_cols=110 Identities=26% Similarity=0.379 Sum_probs=90.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCe----------eEEEEEEeCCCcccccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGK----------PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~----------~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||+++|..+.|...+.||++.++. +.+.+++. .+.++|||++|+++|..++..+++++|+++++
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV 114 (217)
T 2f7s_A 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLM 114 (217)
T ss_dssp TSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEE
Confidence 79999999999999999899999998875 56777766 79999999999999999999999999987776
Q ss_pred hh---------------hc------CCccEEecccccchhhhhc--------hhc--cCceEEcccccccCC
Q psy13093 70 AL---------------HA------GHPVRFPRGRKIRIMQMIG--------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~---------------~~------~~~~~~~~gnk~dl~~~~~--------~~~--~~~~~e~SAk~~~n~ 110 (111)
++ .+ .+.++++++||+|+..... +.. ++.++++||++|.|+
T Consensus 115 ~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi 186 (217)
T 2f7s_A 115 FDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 186 (217)
T ss_dssp EETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCH
Confidence 65 01 4567999999999954211 111 778999999999885
No 77
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.88 E-value=1.9e-23 Score=135.00 Aligned_cols=110 Identities=16% Similarity=0.089 Sum_probs=85.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccc-cCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDR-LRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~-~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||+++|....+...+.|+++.++ .+.+.+++..+.+++||++|++++.. +++.|++++++++++++
T Consensus 33 ~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~ 112 (195)
T 3cbq_A 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSF 112 (195)
T ss_dssp TSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHH
T ss_pred CCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHH
Confidence 7999999999976555444566666665 46778899999999999999999875 88999999998776665
Q ss_pred ------------hc--CCccEEecccccchhh--hhc------hhc--cCceEEcccccccCC
Q psy13093 72 ------------HA--GHPVRFPRGRKIRIMQ--MIG------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~--~~~~~~~~gnk~dl~~--~~~------~~~--~~~~~e~SAk~~~n~ 110 (111)
.. .+.+++++|||+|+.. .+. ++. ++.|+|+||++|.|+
T Consensus 113 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 113 SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp HTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 11 3567999999999953 122 222 678999999999985
No 78
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.88 E-value=4.1e-23 Score=128.87 Aligned_cols=106 Identities=22% Similarity=0.222 Sum_probs=82.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.|.. +.||++... ..+ +...+.+++||++|+++++.+++.+++++|+++.+++
T Consensus 10 ~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 85 (164)
T 1r8s_A 10 AAGKTTILYKLKLGEIVT-TIPTIGFNV-ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 85 (164)
T ss_dssp TSSHHHHHHHHHHHCSSC-CCCCSSCCE-EEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHH
T ss_pred CCCHHHHHHHHHcCCcCc-ccCcCceeE-EEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 799999999999998875 688988543 333 3456899999999999999999999999999776665
Q ss_pred ------------hcCCccEEecccccchhhhhc---hhc----------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG---FRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~---~~~----------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... ..+ ++.++++||++|.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (164)
T 1r8s_A 86 AREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGL 149 (164)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred HHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCH
Confidence 123567999999999954311 111 346899999999985
No 79
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=3.6e-23 Score=133.48 Aligned_cols=111 Identities=19% Similarity=0.164 Sum_probs=58.6
Q ss_pred CcchHHHHHHHHhC--CCCCCCCCceeeee-EEEEEECCe--eEEEEEEeCCCcccccccCcccccCCceeeeehh----
Q psy13093 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNY-SANVMVDGK--PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL---- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~~~~~~t~~~~~-~~~i~~~~~--~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~---- 71 (111)
|||||||++++..+ .|...+.||++.++ ...+.+++. .+.+.+||++|+++|..++..+++++|+++++++
T Consensus 30 ~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 109 (208)
T 2yc2_C 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSM 109 (208)
T ss_dssp -------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCH
T ss_pred CCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCH
Confidence 69999999999999 89889999999776 467778877 8999999999999999999999999999777765
Q ss_pred ---------------hc----CCccEEecccccchhh---hhc------hhc--cCceEEccccc-ccCCC
Q psy13093 72 ---------------HA----GHPVRFPRGRKIRIMQ---MIG------FRD--RLLWGSKQARE-EKNEK 111 (111)
Q Consensus 72 ---------------~~----~~~~~~~~gnk~dl~~---~~~------~~~--~~~~~e~SAk~-~~n~~ 111 (111)
.. .+.++++++||+|+.. .+. +.. ++.++++||++ |.|++
T Consensus 110 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~ 180 (208)
T 2yc2_C 110 ESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180 (208)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------C
T ss_pred HHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHH
Confidence 11 4667999999999964 221 111 67899999999 98864
No 80
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.88 E-value=3e-22 Score=137.40 Aligned_cols=110 Identities=60% Similarity=0.897 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+.+|..+.|...+.||++..+...+.+++..+.+++||++|+++|..++..+++++|+++++++
T Consensus 165 ~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 244 (332)
T 2wkq_A 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHH 244 (332)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred CCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHH
Confidence 79999999999999999999999999888788889999999999999999999999999999999777665
Q ss_pred -----------hcCCccEEecccccchhhh--------------hch------hc--cC-ceEEcccccccCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGF------RD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~------~~--~~-~~~e~SAk~~~n~ 110 (111)
..++.++++++||+|+... +.. +. ++ .++++||++|.|+
T Consensus 245 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 317 (332)
T 2wkq_A 245 VRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317 (332)
T ss_dssp HHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCH
Confidence 1235679999999999532 111 11 44 8999999999985
No 81
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=3e-24 Score=139.01 Aligned_cols=111 Identities=61% Similarity=0.911 Sum_probs=91.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.|...+.||++..+...+.+++..+.+++||++|+++|..++..+++++|+++++++
T Consensus 40 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~ 119 (204)
T 3th5_A 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119 (204)
Confidence 79999999999999999999999998887777788889999999999999999999999999998666554
Q ss_pred -----------hcCCccEEecccccchhhh--------------hchhc--------cC-ceEEcccccccCCC
Q psy13093 72 -----------HAGHPVRFPRGRKIRIMQM--------------IGFRD--------RL-LWGSKQAREEKNEK 111 (111)
Q Consensus 72 -----------~~~~~~~~~~gnk~dl~~~--------------~~~~~--------~~-~~~e~SAk~~~n~~ 111 (111)
..++.++++++||+|+... +...+ ++ .++++||++|.|++
T Consensus 120 ~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 193 (204)
T 3th5_A 120 VRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193 (204)
Confidence 1114568899999999542 11111 34 78999999999863
No 82
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.88 E-value=1.6e-22 Score=130.34 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=79.3
Q ss_pred CcchHHHHHHHHh--CCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccc-ccccCcccccCCceeeeehh-----
Q psy13093 1 AVGKTCLLISYTT--NAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTWSLRSFAL----- 71 (111)
Q Consensus 1 gvGKssl~~~~~~--~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~-~~~~~~~~~~~a~~~~~~~~----- 71 (111)
|||||||++||+. ..|...+. ++|.++ .+.+.+++..+.+.+||++|++. ++.+++.|++.+++++.+++
T Consensus 16 ~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~ 94 (192)
T 2cjw_A 16 GVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA 94 (192)
T ss_dssp TSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH
T ss_pred CCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH
Confidence 7999999999995 34555544 466665 57788899999999999999987 67788999999998666554
Q ss_pred -------------h---cCCccEEecccccchhh--hhchh------c--cCceEEcccccccCC
Q psy13093 72 -------------H---AGHPVRFPRGRKIRIMQ--MIGFR------D--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -------------~---~~~~~~~~~gnk~dl~~--~~~~~------~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.+++++|||+|+.. .+... . ++.|+||||++|.|+
T Consensus 95 s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 95 SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNV 159 (192)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence 1 13456999999999953 12111 1 678999999999986
No 83
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=2.2e-23 Score=144.27 Aligned_cols=105 Identities=12% Similarity=-0.031 Sum_probs=79.2
Q ss_pred CcchHHHHHHHHhCCCCC---CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccc---cCcccccCCceeeeehhh--
Q psy13093 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR---LRPLSYPQTWSLRSFALH-- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~---~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~---~~~~~~~~a~~~~~~~~~-- 72 (111)
|||||||+.|+..+.+.. .+.||+|.++.. + +..++++|||||||++|+. +++.||++|++++.+++.
T Consensus 9 gvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd 84 (331)
T 3r7w_B 9 RCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD 84 (331)
T ss_dssp TSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS
T ss_pred CCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc
Confidence 799999999988665433 368999998853 3 3569999999999999974 468999999998777751
Q ss_pred -------------------cCCccEEecccccchhh---------hhch------hc------cCceEEcccccccCC
Q psy13093 73 -------------------AGHPVRFPRGRKIRIMQ---------MIGF------RD------RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------------~~~~~~~~~gnk~dl~~---------~~~~------~~------~~~~~e~SAk~~~n~ 110 (111)
.++.+++++|||+|+.. .+.. ++ ++.|+|||||. .|+
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV 161 (331)
T 3r7w_B 85 EYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSI 161 (331)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHH
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcH
Confidence 24456899999999942 1222 22 47899999997 353
No 84
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.87 E-value=1.9e-22 Score=125.41 Aligned_cols=110 Identities=25% Similarity=0.321 Sum_probs=92.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+...+.||++..+...+.+++..+.+.+||++|++++..++..+++.+++++.+++
T Consensus 13 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 92 (166)
T 2ce2_X 13 GVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92 (166)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHH
T ss_pred CCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHH
Confidence 79999999999999999999999998887778888999999999999999999999999999998766654
Q ss_pred ----------h--cCCccEEecccccchhh-------hhchhc--cCceEEcccccccCC
Q psy13093 72 ----------H--AGHPVRFPRGRKIRIMQ-------MIGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------~--~~~~~~~~~gnk~dl~~-------~~~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.. ...+.+ +++++++||++|.|+
T Consensus 93 ~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 93 IHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGV 152 (166)
T ss_dssp HHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 1 12567999999999843 111221 788999999999875
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.87 E-value=1.9e-22 Score=128.29 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=84.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||+++|..+.| ..+.||+|..+ +.+.++ .+.+.+||++|+++++.++..+++++|+++.+++
T Consensus 31 ~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~ 106 (181)
T 2h17_A 31 NAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV 106 (181)
T ss_dssp TSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEET--TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHH
T ss_pred CCCHHHHHHHHhcCCC-CccCCcCceee-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 7999999999999998 67789988665 344554 3889999999999999999999999999777665
Q ss_pred ---------h---cCCccEEecccccchhhhhchh-------------ccCceEEcccccccCC
Q psy13093 72 ---------H---AGHPVRFPRGRKIRIMQMIGFR-------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~---~~~~~~~~~gnk~dl~~~~~~~-------------~~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+....... .++.++++||++|.|+
T Consensus 107 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 107 TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred HHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 1 3556799999999995421111 1457899999999985
No 86
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=127.09 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=77.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccc--ccccCcccccCCceeeeehh------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQED--YDRLRPLSYPQTWSLRSFAL------ 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~--~~~~~~~~~~~a~~~~~~~~------ 71 (111)
|||||||+++|..+.+...+ ++.|.++ .+.+.+++..+.+.+||++|+++ +..+++.+++.+++++.+++
T Consensus 14 ~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 92 (175)
T 2nzj_A 14 GVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS 92 (175)
T ss_dssp TSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH
T ss_pred CccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH
Confidence 79999999999999886654 4567665 46778899999999999999998 67788899999998766654
Q ss_pred ------------h---cCCccEEecccccchhhh--hch------hc--cCceEEcccccccCC
Q psy13093 72 ------------H---AGHPVRFPRGRKIRIMQM--IGF------RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~---~~~~~~~~~gnk~dl~~~--~~~------~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+... +.. +. ++.++++||++|.|+
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 93 FESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp HHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 1 135669999999999532 111 11 678999999999985
No 87
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=1e-23 Score=136.12 Aligned_cols=110 Identities=25% Similarity=0.473 Sum_probs=85.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||+++++.+.+...+.|+++.++. ..+.+++..+.+.|||++|++++..++..+++++|+++++++.
T Consensus 43 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 122 (199)
T 3l0i_B 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 122 (199)
T ss_dssp TSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHH
Confidence 79999999999999999999999998875 6778899999999999999999999999999999998777651
Q ss_pred -------------cCCccEEecccccchhhhh--------chhc--cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMI--------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~--------~~~~--~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.... .+.. +++++++||++|.|+
T Consensus 123 ~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 123 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNV 183 (199)
T ss_dssp HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHH
T ss_pred HHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 1245689999999994321 1111 778999999999875
No 88
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.87 E-value=3.8e-22 Score=127.82 Aligned_cols=110 Identities=23% Similarity=0.337 Sum_probs=88.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCee-------------------------------------EEEE
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKP-------------------------------------INLG 42 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~-------------------------------------~~l~ 42 (111)
|||||||+++++.+.+...+.||++.++. ..+.+++.. +.+.
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (208)
T 3clv_A 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFD 96 (208)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEE
T ss_pred CCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEE
Confidence 79999999999999999999999998874 566666655 8999
Q ss_pred EEeCCCcccccccCcccccCCceeeeehh------------------hcCCccEEecccccchhh-hhc------hhc--
Q psy13093 43 LWDTAGQEDYDRLRPLSYPQTWSLRSFAL------------------HAGHPVRFPRGRKIRIMQ-MIG------FRD-- 95 (111)
Q Consensus 43 iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------------------~~~~~~~~~~gnk~dl~~-~~~------~~~-- 95 (111)
|||++|+++|..++..+++.+|+++.+.+ .....++++++||+|+.. .+. +..
T Consensus 97 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~ 176 (208)
T 3clv_A 97 IWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDN 176 (208)
T ss_dssp EEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHc
Confidence 99999999999999999999998777665 213367899999999521 111 111
Q ss_pred cCceEEcccccccCC
Q psy13093 96 RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 ~~~~~e~SAk~~~n~ 110 (111)
++.++++||++|.|+
T Consensus 177 ~~~~~~~Sa~~~~~i 191 (208)
T 3clv_A 177 NLLFIQTSAKTGTNI 191 (208)
T ss_dssp TCEEEEECTTTCTTH
T ss_pred CCcEEEEecCCCCCH
Confidence 778999999999885
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.87 E-value=9.7e-22 Score=123.21 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=83.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+. .+.||++..+ ..+.++ .+.+.+||++|+++++.++..+++++|+++.+.+
T Consensus 17 ~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 92 (171)
T 1upt_A 17 GAGKTTILYRLQVGEVV-TTIPTIGFNV-ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGI 92 (171)
T ss_dssp TSSHHHHHHHHHHSSCC-CCCCCSSEEE-EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHH
T ss_pred CCCHHHHHHHHhcCCCC-CcCCcCccce-EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 79999999999999986 4688887654 344454 6889999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhhhc---hhc----------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG---FRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~---~~~----------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... ..+ ++.++++||++|.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 93 SKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred HHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence 124667999999999954211 111 457899999999885
No 90
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.87 E-value=1.3e-22 Score=132.06 Aligned_cols=87 Identities=18% Similarity=0.139 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCe-eEEEEEEeCCCcccccc-cCcccccCCceeeeehhh------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PINLGLWDTAGQEDYDR-LRPLSYPQTWSLRSFALH------ 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~-~~~l~iwD~~G~~~~~~-~~~~~~~~a~~~~~~~~~------ 72 (111)
|||||||+++|+.+.|...+.|+. ..+.. +.+++. .+.++||||+|+++|+. +++.|++++++++++++.
T Consensus 17 ~~GKTsli~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 94 (214)
T 2fh5_B 17 DSGKTLLFVRLLTGQYRDTQTSIT-DSSAI-YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQRE 94 (214)
T ss_dssp TSSHHHHHHHHHHSCCCCBCCCCS-CEEEE-EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHH
T ss_pred CCCHHHHHHHHhCCCcccccCCcc-eeeEE-EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHH
Confidence 799999999999999998886654 44432 556655 79999999999999998 899999999997776651
Q ss_pred ------------------cCCccEEecccccchhh
Q psy13093 73 ------------------AGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 73 ------------------~~~~~~~~~gnk~dl~~ 89 (111)
..+.++++++||+|+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 95 VKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 12456999999999953
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.87 E-value=9.2e-23 Score=130.10 Aligned_cols=106 Identities=18% Similarity=0.108 Sum_probs=82.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+ ..+.||+|... +.+.++ .+.+++||++|+++++.++..+++++|+++.+++
T Consensus 26 ~vGKSsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~ 101 (181)
T 1fzq_A 26 NAGKTTLLKQLASEDI-SHITPTQGFNI-KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 101 (181)
T ss_dssp TSSHHHHHHHHCCSCC-EEEEEETTEEE-EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHH
T ss_pred CCCHHHHHHHHhcCCC-CcccCcCCeEE-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHH
Confidence 7999999999998865 45788888543 445555 5889999999999999999999999999777664
Q ss_pred ------------hcCCccEEecccccchhhhhchh---c----------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFR---D----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~---~----------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+....... + ++.++++||++|.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 102 TGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp HHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred HHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 12456799999999995432211 1 456899999999985
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=2.4e-22 Score=128.36 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=80.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+. .+.||++... ..+.++ .+.+++||++|+++++.++..+++++|+++.+++
T Consensus 26 ~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 101 (187)
T 1zj6_A 26 NAGKTTILYQFSMNEVV-HTSPTIGSNV-EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV 101 (187)
T ss_dssp TSSHHHHHHHHHTTSCE-EEECCSCSSC-EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHH
T ss_pred CCCHHHHHHHHhcCCCC-cCcCCCccce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHH
Confidence 79999999999999987 7789988554 344554 4889999999999999999999999999777665
Q ss_pred ---------h---cCCccEEecccccchhhhhchh-------------ccCceEEcccccccCC
Q psy13093 72 ---------H---AGHPVRFPRGRKIRIMQMIGFR-------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------~---~~~~~~~~~gnk~dl~~~~~~~-------------~~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+....... .++.++++||++|.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 102 TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165 (187)
T ss_dssp HHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred HHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence 1 2456799999999995421111 1457899999999985
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.86 E-value=4.1e-22 Score=127.52 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=85.1
Q ss_pred CcchHHHHHHHHhCC-CCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~-f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++..+. +...+.||++.. ...+.++ .+.+.+||++|+++++.++..+++++|+++.+++
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 107 (190)
T 2h57_A 31 NSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMV 107 (190)
T ss_dssp TSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHH
Confidence 799999999999888 778889999844 3445555 4789999999999999999999999999777665
Q ss_pred ----------hc-----CCccEEecccccchhhhhchh-------------ccCceEEcccccccCC
Q psy13093 72 ----------HA-----GHPVRFPRGRKIRIMQMIGFR-------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------~~-----~~~~~~~~gnk~dl~~~~~~~-------------~~~~~~e~SAk~~~n~ 110 (111)
.. .+.++++++||+|+....... .++.++++||++|.|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 108 VAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp HHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred HHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 11 456799999999995432111 1467899999999985
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=9.4e-23 Score=130.26 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=73.5
Q ss_pred CcchHHHHHHHHhC--CCCCCCCCceeeeeE-EEEEE---CCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---
Q psy13093 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYS-ANVMV---DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~~~~~~t~~~~~~-~~i~~---~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--- 71 (111)
|||||||+++|+.. .|...+.||+|.++. ..+.+ ++..+.+++||++|+++|..+++.|++++++++.+++
T Consensus 12 gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (184)
T 2zej_A 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK 91 (184)
T ss_dssp TSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG
T ss_pred CCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc
Confidence 79999999999984 677788999998874 34433 3467899999999999999999999999998655443
Q ss_pred -----------------hcCCccEEecccccchhhhhc-----------hhc--cCc----eEEccccccc
Q psy13093 72 -----------------HAGHPVRFPRGRKIRIMQMIG-----------FRD--RLL----WGSKQAREEK 108 (111)
Q Consensus 72 -----------------~~~~~~~~~~gnk~dl~~~~~-----------~~~--~~~----~~e~SAk~~~ 108 (111)
..++.+++++|||+|+..... +++ ++. |+++||++|.
T Consensus 92 ~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
T 2zej_A 92 GQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEES 162 (184)
T ss_dssp CHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCC
T ss_pred chhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCc
Confidence 124567999999999954221 121 555 8999999985
No 95
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=8.7e-22 Score=125.42 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=84.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+. ...+.||++... +.+.++ .+.+++||++|+++++.+++.+++++|+++.+.+
T Consensus 28 ~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 103 (186)
T 1ksh_A 28 NAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQD 103 (186)
T ss_dssp TSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHH
T ss_pred CCCHHHHHHHHhcCC-CCcccccCccce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence 799999999999988 778899998554 344454 5889999999999999999999999998776665
Q ss_pred ------------hcCCccEEecccccchhhhhchh-------------ccCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIGFR-------------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~~~-------------~~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+....... .++.++++||++|.|+
T Consensus 104 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 104 CQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred HHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 12456799999999995422111 1457899999999885
No 96
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=3.2e-22 Score=130.44 Aligned_cols=111 Identities=24% Similarity=0.237 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEE-EEEEC-CeeEEEEEEeCCCcccccccCcccccCCceeeeehh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~-~i~~~-~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~------- 71 (111)
|||||||+++++.+.+...+.+|++..+.. .+... +..+.+.+||++|++++..++..+++++|+++++++
T Consensus 21 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 100 (218)
T 4djt_A 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC 100 (218)
T ss_dssp TSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHH
Confidence 799999999999999998889999887753 33333 445899999999999999999999999999777665
Q ss_pred -------------hcCCccEEecccccchhhh--h------chhc--cCceEEcccccccCCC
Q psy13093 72 -------------HAGHPVRFPRGRKIRIMQM--I------GFRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl~~~--~------~~~~--~~~~~e~SAk~~~n~~ 111 (111)
...+.++++++||+|+... + .... ++.++++||++|.|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 101 QNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp HTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 1123569999999999532 1 1111 7789999999999874
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=1.4e-22 Score=130.47 Aligned_cols=106 Identities=22% Similarity=0.207 Sum_probs=77.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.|. .+.||++... ..+.. ..+.+++||++|+++|+.+++.+++++|+++++++
T Consensus 39 ~vGKSsLi~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~ 114 (192)
T 2b6h_A 39 AAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQE 114 (192)
T ss_dssp TSSHHHHHHHHCSSCCE-EEEEETTEEE-EEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHH
T ss_pred CCCHHHHHHHHHhCCcc-ccCCcCceeE-EEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 79999999999999886 4678888443 33333 45899999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhhhc---hhc----------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMIG---FRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~~---~~~----------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... ..+ ++.++++||++|.|+
T Consensus 115 ~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 115 SADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred HHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 113567999999999954311 111 346899999999885
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.85 E-value=1e-21 Score=125.43 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=82.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh---------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL--------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~--------- 71 (111)
|||||||++++..+.+.. +.||++... ..+.++ .+.+++|||+|+++++.+++.+++++|+++.+++
T Consensus 32 ~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 107 (189)
T 2x77_A 32 NAGKTSILYRLHLGDVVT-TVPTVGVNL-ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGV 107 (189)
T ss_dssp TSSHHHHHHHTCCSCCEE-ECSSTTCCE-EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHH
T ss_pred CCCHHHHHHHHHcCCCCC-cCCCCceEE-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHH
Confidence 799999999999888864 678888543 344444 6889999999999999999999999999777665
Q ss_pred ------------hcCCccEEecccccchhhhh---chhc----------cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQMI---GFRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~~---~~~~----------~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... ...+ ++.++++||++|.|+
T Consensus 108 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 108 AKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp HHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred HHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 12356799999999995421 1111 346899999999885
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-21 Score=124.39 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=79.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||++++..+.+ ..+.||++... ..+.++ .+.+.+||++|+++++.++..+++++|+++.+.+.
T Consensus 28 ~~GKssli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 103 (183)
T 1moz_A 28 GAGKTTILYRLQIGEV-VTTKPTIGFNV-ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMST 103 (183)
T ss_dssp TSSHHHHHHHTCCSEE-EEECSSTTCCE-EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHH
T ss_pred CCCHHHHHHHHhcCCc-CccCCcCccce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHH
Confidence 7999999999998888 67788988553 344554 48899999999999999999999999987776650
Q ss_pred -------------cCCccEEecccccchhhhhchh---c----------cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGFR---D----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~~---~----------~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+....... + ++.++++||++|.|+
T Consensus 104 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 104 ASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp HHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred HHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 2456799999999995421111 1 346899999999985
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.84 E-value=1.9e-20 Score=120.77 Aligned_cols=110 Identities=29% Similarity=0.391 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++....|...+.||++.++. ..+.+++..+.+++||++|+++++.++..+++++++++.+.+
T Consensus 15 g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 94 (199)
T 2f9l_A 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYE 94 (199)
T ss_dssp TSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHH
Confidence 79999999999999999899999998874 678899999999999999999999999999999998655443
Q ss_pred ----------h--cCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 72 ----------H--AGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------~--~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+... ..+.. ++.++++||+.+.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 95 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNV 155 (199)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 0 134568999999999531 12222 778999999999875
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.83 E-value=8.5e-21 Score=119.27 Aligned_cols=108 Identities=10% Similarity=-0.015 Sum_probs=76.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccccc------ccCccccc--CCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYD------RLRPLSYP--QTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~------~~~~~~~~--~a~~~~~~~~ 71 (111)
|||||||++++....+...+.|++..+. ...+.+++ ..+++|||+|+++|. .+.+.|++ ++++++.+.+
T Consensus 13 gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 90 (165)
T 2wji_A 13 NVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVD 90 (165)
T ss_dssp TSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEec
Confidence 7999999999998877666667665554 34555554 679999999999886 34567776 8888766654
Q ss_pred h--------------cCCccEEecccccchhhhh-------chhc--cCceEEcccccccCC
Q psy13093 72 H--------------AGHPVRFPRGRKIRIMQMI-------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~--------------~~~~~~~~~gnk~dl~~~~-------~~~~--~~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.... .+++ ++.++++||++|+|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 91 ATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCH
Confidence 1 1245699999999995421 1222 788999999999986
No 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.83 E-value=4.6e-20 Score=118.58 Aligned_cols=110 Identities=27% Similarity=0.354 Sum_probs=90.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|||||||++++....+...+.||++.++. ..+.+++..+.+++||++|++++..+++.+++++++++.+.+
T Consensus 39 g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 118 (191)
T 1oix_A 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 118 (191)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHH
Confidence 79999999999999999999999999884 688899999999999999999999999999999987555433
Q ss_pred ------------hcCCccEEecccccchhhh--------hchhc--cCceEEcccccccCC
Q psy13093 72 ------------HAGHPVRFPRGRKIRIMQM--------IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ------------~~~~~~~~~~gnk~dl~~~--------~~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+... ..+.. ++.++++||+.+.|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 119 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNV 179 (191)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 0124458999999999531 11222 678999999999875
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.2e-21 Score=131.49 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=80.7
Q ss_pred CcchHHHHHHHHh---CCCCCCCCCce-eeeeE-EEE--------------EECCeeEEEEEEe----------------
Q psy13093 1 AVGKTCLLISYTT---NAFPGEYIPTV-FDNYS-ANV--------------MVDGKPINLGLWD---------------- 45 (111)
Q Consensus 1 gvGKssl~~~~~~---~~f~~~~~~t~-~~~~~-~~i--------------~~~~~~~~l~iwD---------------- 45 (111)
|||||||++||+. +.|...+.||+ +.+|. +.+ .+++..+.++|||
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~ 117 (255)
T 3c5h_A 38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST 117 (255)
T ss_dssp CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence 6999999999999 67888888887 55542 222 2467889999999
Q ss_pred -------CCCcccccccCccccc---------------------CCceeeeehhhc-----------------------C
Q psy13093 46 -------TAGQEDYDRLRPLSYP---------------------QTWSLRSFALHA-----------------------G 74 (111)
Q Consensus 46 -------~~G~~~~~~~~~~~~~---------------------~a~~~~~~~~~~-----------------------~ 74 (111)
++|+++|..+++.||+ +||+++++++.. .
T Consensus 118 ~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~ 197 (255)
T 3c5h_A 118 ALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT 197 (255)
T ss_dssp GCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC
Confidence 8999999999999999 799876665522 2
Q ss_pred CccEEecccccchhhh------hchh---ccCceEEcccccccCC
Q psy13093 75 HPVRFPRGRKIRIMQM------IGFR---DRLLWGSKQAREEKNE 110 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~~------~~~~---~~~~~~e~SAk~~~n~ 110 (111)
+.++++++||+|+... ..++ .++.++++||++|.|+
T Consensus 198 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNV 242 (255)
T ss_dssp TCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred CCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCH
Confidence 4568999999999432 1122 1678999999999985
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.3e-21 Score=135.63 Aligned_cols=106 Identities=21% Similarity=0.209 Sum_probs=78.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+++|..+.|... .||++..+.. ++...+.++||||+|+++|..+++.+++++|+++++++.
T Consensus 175 ~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~---~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~ 250 (329)
T 3o47_A 175 AAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 250 (329)
T ss_dssp TSSHHHHHHHTCSSCCEEE-EEETTEEEEE---EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHH
T ss_pred CccHHHHHHHHhCCCCCCc-ccccceEEEE---EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHH
Confidence 7999999999999998655 4788876542 334568999999999999999999999999998777651
Q ss_pred -------------cCCccEEecccccchhhhhchhc-------------cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGFRD-------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~~~-------------~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.......+ ++.++++||++|.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 251 AREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGL 314 (329)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred HHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence 23566999999999954322111 446899999999985
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=1.3e-20 Score=118.83 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=84.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
|||||||++++..+.+...+.|+++.++. ..+.+++. .+.+|||+|+++|..++..+++.+|+++++++.
T Consensus 18 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~ 95 (178)
T 2lkc_A 18 DHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQ 95 (178)
T ss_dssp TTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHH
T ss_pred CCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHH
Confidence 79999999999999998888888776653 45666664 567999999999999999999999987776651
Q ss_pred ---------cCCccEEecccccchhhh-----hc-hhc----------cCceEEcccccccCC
Q psy13093 73 ---------AGHPVRFPRGRKIRIMQM-----IG-FRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 ---------~~~~~~~~~gnk~dl~~~-----~~-~~~----------~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+... .. ..+ .+.++++||++|.|+
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 224568999999999531 11 111 157999999999875
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=2.3e-20 Score=135.05 Aligned_cols=106 Identities=21% Similarity=0.173 Sum_probs=84.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
|||||||+++|..+++.. +.||++..+.. ++...+.+.||||+|+++|+.++..+|+++|+++++++.
T Consensus 332 nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~ 407 (497)
T 3lvq_E 332 AAGKTTILYKLKLGQSVT-TIPTVGFNVET---VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 407 (497)
T ss_dssp TSSHHHHHHHHHHSSCCC-CCCCSSEEEEE---EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHH
T ss_pred CCCHHHHHHHHhcCCCCC-cCCccceeEEE---EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHH
Confidence 799999999999999764 57898877643 344568999999999999999999999999998777761
Q ss_pred -------------cCCccEEecccccchhhhhchhc-------------cCceEEcccccccCC
Q psy13093 73 -------------AGHPVRFPRGRKIRIMQMIGFRD-------------RLLWGSKQAREEKNE 110 (111)
Q Consensus 73 -------------~~~~~~~~~gnk~dl~~~~~~~~-------------~~~~~e~SAk~~~n~ 110 (111)
..+.++++++||+|+.......+ .+.++++||++|+|+
T Consensus 408 ~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 408 ARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp HHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 13567999999999953221111 345899999999985
No 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.80 E-value=1.5e-20 Score=121.06 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=77.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-E--EEEEC-CeeEEEEEEeCCCcccccccC---cccccCCceeeeehhh-
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-A--NVMVD-GKPINLGLWDTAGQEDYDRLR---PLSYPQTWSLRSFALH- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~--~i~~~-~~~~~l~iwD~~G~~~~~~~~---~~~~~~a~~~~~~~~~- 72 (111)
|||||||++++.+ .|... +|++..+. + ...+. +..+.++|||++|+++|..+. +.||+++++++++++.
T Consensus 30 ~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 106 (196)
T 3llu_A 30 RSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQ 106 (196)
T ss_dssp TSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETT
T ss_pred CCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECC
Confidence 7999999996654 55443 56666553 2 22343 678999999999999997776 8999999998777652
Q ss_pred --------------------cCCccEEecccccchhh---------hh------chh------ccCceEEcccccccCC
Q psy13093 73 --------------------AGHPVRFPRGRKIRIMQ---------MI------GFR------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 73 --------------------~~~~~~~~~gnk~dl~~---------~~------~~~------~~~~~~e~SAk~~~n~ 110 (111)
.++.+++++|||+|+.. .+ .++ .++.|+||||++ .|+
T Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v 184 (196)
T 3llu_A 107 DDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSI 184 (196)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THH
T ss_pred CchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhH
Confidence 23556999999999621 11 111 156899999999 875
No 108
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.80 E-value=3.8e-20 Score=135.15 Aligned_cols=111 Identities=15% Similarity=0.052 Sum_probs=74.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEE-------EE--CCeeEEEEEEeCCCcccccccCcccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-------MV--DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i-------~~--~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~ 71 (111)
|||||||+++++.+.|...+.||+|..+.... .+ ++..+.+.+||++|++.|..++..+++++++++.+++
T Consensus 51 ~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D 130 (535)
T 3dpu_A 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD 130 (535)
T ss_dssp CSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEEC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEe
Confidence 79999999999999999999999999875322 12 3457899999999999999999999999998777765
Q ss_pred ----------------hcCCccEEecccccchhhhhc--hh------c--cCceEEcccccccCCC
Q psy13093 72 ----------------HAGHPVRFPRGRKIRIMQMIG--FR------D--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 ----------------~~~~~~~~~~gnk~dl~~~~~--~~------~--~~~~~e~SAk~~~n~~ 111 (111)
..++.++++++||+|+..... .. . ++.++++||++|.|++
T Consensus 131 ~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 196 (535)
T 3dpu_A 131 SRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVE 196 (535)
T ss_dssp GGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CT
T ss_pred CCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHH
Confidence 224467999999999953222 11 1 5679999999999874
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.79 E-value=2.3e-19 Score=111.30 Aligned_cols=108 Identities=12% Similarity=-0.063 Sum_probs=72.7
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeee-eEEEEEECCeeEEEEEEeCCCcccc-------cccCcccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDY-------DRLRPLSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~-~~~~i~~~~~~~~l~iwD~~G~~~~-------~~~~~~~~~~a~~~~~~~~ 71 (111)
|||||||++++..+.+. ....|+...+ +...+..++. .+.+||++|++++ ...+..+++.+++++.+.+
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 88 (161)
T 2dyk_A 11 NVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVD 88 (161)
T ss_dssp TSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEE
Confidence 79999999999998753 1222333333 3345555554 7889999999983 4456678899998766665
Q ss_pred h----------------cCCccEEecccccchhhhhc----hhc-cC-ceEEcccccccCC
Q psy13093 72 H----------------AGHPVRFPRGRKIRIMQMIG----FRD-RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 ~----------------~~~~~~~~~gnk~dl~~~~~----~~~-~~-~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+..... ... ++ .++++||++|.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 89 GRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp SSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSH
T ss_pred CCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCCh
Confidence 1 12456899999999964321 112 55 7899999999985
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=1.2e-19 Score=115.58 Aligned_cols=108 Identities=9% Similarity=-0.042 Sum_probs=79.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccccc------ccCccccc--CCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYD------RLRPLSYP--QTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~------~~~~~~~~--~a~~~~~~~~ 71 (111)
|||||||++++....+...+.|++..++ ...+.++ ...+.+|||+|++++. .++..|++ .+++++.+.+
T Consensus 17 gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 94 (188)
T 2wjg_A 17 NVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVD 94 (188)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEec
Confidence 7999999999998776555567666554 3455554 3789999999999985 45677775 4887665554
Q ss_pred --------------hcCCccEEecccccchhhhh-------chhc--cCceEEcccccccCC
Q psy13093 72 --------------HAGHPVRFPRGRKIRIMQMI-------GFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------------~~~~~~~~~~gnk~dl~~~~-------~~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... .+++ ++.++++||++|.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 95 ATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp GGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred chhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence 12345689999999995432 1222 788999999999885
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=4.9e-19 Score=121.62 Aligned_cols=104 Identities=18% Similarity=0.170 Sum_probs=80.4
Q ss_pred CcchHHHHHHHHhC--CCC-CCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccc-----cccCcccccCCceeeeehh-
Q psy13093 1 AVGKTCLLISYTTN--AFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-----DRLRPLSYPQTWSLRSFAL- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~-~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~-----~~~~~~~~~~a~~~~~~~~- 71 (111)
|||||||++++..+ .+. ..+.||++..+. .+.+++ .+.++|||++|+++| ..+++.+++++|+++.+++
T Consensus 13 ~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~ 90 (307)
T 3r7w_A 13 GSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDV 90 (307)
T ss_dssp TSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEET
T ss_pred CCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEEC
Confidence 79999999999987 343 357788888775 234444 789999999999999 7899999999999877765
Q ss_pred ---------------------hcCCccEEecccccchhh--hh------------chhc--c---CceEEccccc
Q psy13093 72 ---------------------HAGHPVRFPRGRKIRIMQ--MI------------GFRD--R---LLWGSKQARE 106 (111)
Q Consensus 72 ---------------------~~~~~~~~~~gnk~dl~~--~~------------~~~~--~---~~~~e~SAk~ 106 (111)
..++.++++++||+|+.. .. .++. + +.+++|||++
T Consensus 91 t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 91 ESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred CChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 123567999999999954 11 1111 3 7899999998
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.77 E-value=1.1e-18 Score=110.43 Aligned_cols=108 Identities=18% Similarity=0.085 Sum_probs=74.1
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCccccccc--------CcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL--------RPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~--------~~~~~~~a~~~~~~~ 70 (111)
|||||||++++....+ ...+.++....+...+.+++. .+.+|||+|++++... ...+++++|+++.++
T Consensus 14 g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~ 91 (172)
T 2gj8_A 14 NAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMV 91 (172)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 7999999999998764 334444433333566777764 4789999999764321 124688999876665
Q ss_pred hhc-------------------CCccEEecccccchhhh-hchhc--cCceEEcccccccCC
Q psy13093 71 LHA-------------------GHPVRFPRGRKIRIMQM-IGFRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~~-------------------~~~~~~~~gnk~dl~~~-~~~~~--~~~~~e~SAk~~~n~ 110 (111)
+.. .+.++++++||+|+... ..... ++.++++||++|.|+
T Consensus 92 D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 92 DGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp ETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTH
T ss_pred ECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCH
Confidence 511 13468999999999532 22222 678999999999985
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.76 E-value=3e-19 Score=114.23 Aligned_cols=107 Identities=10% Similarity=-0.013 Sum_probs=71.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCC----------cccccccCcccccCC---cee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAG----------QEDYDRLRPLSYPQT---WSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G----------~~~~~~~~~~~~~~a---~~~ 66 (111)
|||||||++++..+.|...+.++.+.... ....+++ .+.+|||+| ++++..++..|++.+ +++
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (195)
T 1svi_A 33 NVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAV 109 (195)
T ss_dssp TSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEE
Confidence 79999999999999887777888776553 3333443 589999999 888999999999877 776
Q ss_pred eeehh----------------hcCCccEEecccccchhhhhc-----------hhc--cCceEEcccccccCC
Q psy13093 67 RSFAL----------------HAGHPVRFPRGRKIRIMQMIG-----------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 67 ~~~~~----------------~~~~~~~~~~gnk~dl~~~~~-----------~~~--~~~~~e~SAk~~~n~ 110 (111)
+.+.+ ...+.++++++||+|+..... ++. ++.++++||++|+|+
T Consensus 110 i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 182 (195)
T 1svi_A 110 VQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGK 182 (195)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCH
Confidence 66554 123456999999999943211 111 568999999999985
No 114
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=5.8e-20 Score=119.73 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=71.4
Q ss_pred CcchHHHHHHHHhCCCCC---CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccC----Cceeeeehhhc
Q psy13093 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ----TWSLRSFALHA 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~---~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~----a~~~~~~~~~~ 73 (111)
|||||||++++....|.. .+.|+++..+ ..+.+.+||++|+++++.++..|++. +++++.+++..
T Consensus 22 g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 22 NSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp TSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred CCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECC
Confidence 799999999999998765 4667766554 45789999999999999999999987 88876665532
Q ss_pred -------------------------CCccEEecccccchhhhhc--------------hhc--cCceEEcccccccCC
Q psy13093 74 -------------------------GHPVRFPRGRKIRIMQMIG--------------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 74 -------------------------~~~~~~~~gnk~dl~~~~~--------------~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.++++++||+|+..... +.. ++.++++||++|.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 94 VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEED 171 (218)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred CChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 3455999999999953221 111 567899999999875
No 115
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.70 E-value=9.6e-18 Score=113.67 Aligned_cols=107 Identities=13% Similarity=-0.026 Sum_probs=76.7
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCccccc------ccCccccc--CCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYD------RLRPLSYP--QTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~------~~~~~~~~--~a~~~~~~~~ 71 (111)
|||||||+++++...+.....| |..+ .+...++. .+.+++||++|+.++. .+++.|++ ++|+++.+++
T Consensus 13 nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D 89 (272)
T 3b1v_A 13 NSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVD 89 (272)
T ss_dssp TSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred CCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEec
Confidence 7999999999998764333234 3333 23444555 7789999999999986 46677886 5888776665
Q ss_pred h--------------cCCccEEecccccchhhhhc-------hhc--cCceEEcccccccCC
Q psy13093 72 H--------------AGHPVRFPRGRKIRIMQMIG-------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~--------------~~~~~~~~~gnk~dl~~~~~-------~~~--~~~~~e~SAk~~~n~ 110 (111)
. -.+.++++++||+|+..... +++ +++++++||++|.|+
T Consensus 90 ~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 90 ATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp GGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCH
Confidence 1 13557899999999964322 222 789999999999985
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.70 E-value=1.1e-17 Score=106.64 Aligned_cols=106 Identities=13% Similarity=-0.031 Sum_probs=74.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCeeEEEEEEeCCC----------cccccccCcccccCC---cee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAG----------QEDYDRLRPLSYPQT---WSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~-~i~~~~~~~~l~iwD~~G----------~~~~~~~~~~~~~~a---~~~ 66 (111)
|||||||++++..+.+ ..+.++.+..... ....+ ..+.+||++| ++.+..+++.|++.+ +++
T Consensus 33 ~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 108 (195)
T 3pqc_A 33 NVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMV 108 (195)
T ss_dssp TSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEE
Confidence 7999999999999874 4456666655432 22222 3577999999 888999999999877 655
Q ss_pred eeehh----------------hcCCccEEecccccchhhhh----------chhc---cCceEEcccccccCC
Q psy13093 67 RSFAL----------------HAGHPVRFPRGRKIRIMQMI----------GFRD---RLLWGSKQAREEKNE 110 (111)
Q Consensus 67 ~~~~~----------------~~~~~~~~~~gnk~dl~~~~----------~~~~---~~~~~e~SAk~~~n~ 110 (111)
+.+.+ ...+.++++++||+|+.... .... .+.++++||++|.|+
T Consensus 109 i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 109 FLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 54444 11245689999999994211 1111 368999999999985
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.70 E-value=1.9e-17 Score=111.30 Aligned_cols=108 Identities=13% Similarity=-0.013 Sum_probs=79.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccc----------cCcccc--cCCceee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDR----------LRPLSY--PQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~----------~~~~~~--~~a~~~~ 67 (111)
|||||||++++.+..+.....|.+..+. ...+.+++. .+.+|||+|+..+.. +++.|+ +++|+++
T Consensus 11 n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi 88 (256)
T 3iby_A 11 NCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCII 88 (256)
T ss_dssp TSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEE
T ss_pred CCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEE
Confidence 7999999999998876544456555554 345555554 889999999988875 566777 8999887
Q ss_pred eehh--------------hcCCccEEecccccchhhhhch-------hc--cCceEEcccccccCC
Q psy13093 68 SFAL--------------HAGHPVRFPRGRKIRIMQMIGF-------RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~--------------~~~~~~~~~~gnk~dl~~~~~~-------~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+ .-.+.++++++||+|+...... ++ +++++++||++|.|+
T Consensus 89 ~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 89 NVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp EEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred EEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 7776 1124569999999999543222 11 789999999999885
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.70 E-value=3.9e-17 Score=109.85 Aligned_cols=109 Identities=14% Similarity=-0.048 Sum_probs=76.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccC------cccc--cCCceeeeehh-
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLR------PLSY--PQTWSLRSFAL- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~------~~~~--~~a~~~~~~~~- 71 (111)
|||||||++++++..+.....|.+..+. +...+......+.+||++|+..+...+ +.|+ ..+|+++.+.+
T Consensus 15 nvGKTsL~n~l~g~~~~~~~~pg~tv~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~ 93 (258)
T 3a1s_A 15 NVGKTSLFNALTGTKQYVANWPGVTVEK-KEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADS 93 (258)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEE-EEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEET
T ss_pred CCCHHHHHHHHHCCCCcccCCCCceEEE-EEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 7999999999998776544444333332 222233345789999999999987644 6666 58898777665
Q ss_pred -------------hcCCccEEecccccchhhhhc-------hhc--cCceEEcccccccCC
Q psy13093 72 -------------HAGHPVRFPRGRKIRIMQMIG-------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 -------------~~~~~~~~~~gnk~dl~~~~~-------~~~--~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... ++. +++++++||++|.|+
T Consensus 94 t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 94 VNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp TSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTH
T ss_pred CchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCH
Confidence 112456899999999954222 122 789999999999885
No 119
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.69 E-value=1.5e-17 Score=115.22 Aligned_cols=79 Identities=11% Similarity=0.010 Sum_probs=61.9
Q ss_pred HHHHHhCCCCCC-------CCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeeh----------
Q psy13093 8 LISYTTNAFPGE-------YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFA---------- 70 (111)
Q Consensus 8 ~~~~~~~~f~~~-------~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~---------- 70 (111)
+.|+....|.+. ..||+|.... .+.+ ..++++|||++||++++.+|+.||++++++++++
T Consensus 132 l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~-~~~~--~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~ 208 (327)
T 3ohm_A 132 LDRVADPSYLPTQQDVLRVRVPTTGIIEY-PFDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV 208 (327)
T ss_dssp HHHHHSTTCCCCHHHHTTCCCCCCSEEEE-EEEE--TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCS
T ss_pred HHHHhccCCCccccchhcccCceeeEEEE-EEEe--eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccc
Confidence 457777777766 7788886532 3333 4689999999999999999999999999987777
Q ss_pred h---------------------hcCCccEEecccccchhh
Q psy13093 71 L---------------------HAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 71 ~---------------------~~~~~~~~~~gnk~dl~~ 89 (111)
+ ...+.+++++|||+|+..
T Consensus 209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHH
T ss_pred ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhh
Confidence 1 124567999999999954
No 120
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.68 E-value=5.3e-18 Score=107.78 Aligned_cols=105 Identities=14% Similarity=0.062 Sum_probs=75.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCC-----------cccccccCcccccC-Ccee--
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAG-----------QEDYDRLRPLSYPQ-TWSL-- 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G-----------~~~~~~~~~~~~~~-a~~~-- 66 (111)
|||||||++++..+.|...+.|++.... ..+.++ .+.+||++| +++++.++..|+++ ++++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (190)
T 2cxx_A 11 NVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDV 85 (190)
T ss_dssp TSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred CCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCE
Confidence 7999999999999999888888665433 223333 689999999 78888888888887 6642
Q ss_pred -eeehh---------------------------hcCCccEEecccccchhhhh-----chhc--cC-------ceEEccc
Q psy13093 67 -RSFAL---------------------------HAGHPVRFPRGRKIRIMQMI-----GFRD--RL-------LWGSKQA 104 (111)
Q Consensus 67 -~~~~~---------------------------~~~~~~~~~~gnk~dl~~~~-----~~~~--~~-------~~~e~SA 104 (111)
+.+.+ ...+.++++++||+|+.... .++. ++ .++++||
T Consensus 86 v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (190)
T 2cxx_A 86 AVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISA 165 (190)
T ss_dssp EEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCT
T ss_pred EEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEec
Confidence 22221 01245699999999995422 2222 44 3699999
Q ss_pred ccccCC
Q psy13093 105 REEKNE 110 (111)
Q Consensus 105 k~~~n~ 110 (111)
++|.|+
T Consensus 166 ~~~~~v 171 (190)
T 2cxx_A 166 KFGDNI 171 (190)
T ss_dssp TTCTTH
T ss_pred CCCCCH
Confidence 999985
No 121
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=3.6e-17 Score=107.52 Aligned_cols=107 Identities=12% Similarity=-0.011 Sum_probs=67.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCc------cc----ccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQ------ED----YDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~------~~----~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||+++|+.+.|.....+...... ...+.. ..+.+.||||+|+ ++ +..+ ..+++.+|+++++
T Consensus 39 ~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v 115 (228)
T 2qu8_A 39 NVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTTI-TALAHINGVILFI 115 (228)
T ss_dssp TSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEE
T ss_pred CCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHHH-HHhhccccEEEEE
Confidence 7999999999999887532222211121 122222 3478999999999 44 3333 3457788886665
Q ss_pred hhh---------------------cCCccEEecccccchhhhhc-----------hhc--c--CceEEcccccccCC
Q psy13093 70 ALH---------------------AGHPVRFPRGRKIRIMQMIG-----------FRD--R--LLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~~---------------------~~~~~~~~~gnk~dl~~~~~-----------~~~--~--~~~~e~SAk~~~n~ 110 (111)
++. .++.++++++||+|+..... +.. + +.++++||++|.|+
T Consensus 116 ~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 192 (228)
T 2qu8_A 116 IDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGV 192 (228)
T ss_dssp EETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTH
T ss_pred EecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCH
Confidence 541 12566999999999953211 111 3 78999999999985
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.68 E-value=6.2e-17 Score=109.22 Aligned_cols=108 Identities=12% Similarity=-0.014 Sum_probs=80.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccc------cCcccc--cCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDR------LRPLSY--PQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~------~~~~~~--~~a~~~~~~~~ 71 (111)
|||||||+++++...+.....|++..+.. ..+..++ ..+.+||++|+..+.. +++.|+ .++|+++.+.+
T Consensus 13 g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D 90 (271)
T 3k53_A 13 NVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVD 90 (271)
T ss_dssp SSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEec
Confidence 79999999999988775556676666653 4455554 3589999999998877 667777 68888776665
Q ss_pred ---------------hcCCccEEecccccchhhhhc-------hhc--cCceEEcccccccCC
Q psy13093 72 ---------------HAGHPVRFPRGRKIRIMQMIG-------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ---------------~~~~~~~~~~gnk~dl~~~~~-------~~~--~~~~~e~SAk~~~n~ 110 (111)
.....++++++||+|+..... +++ +++++++||++|.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 91 STCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp GGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTH
T ss_pred CCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCH
Confidence 233267999999999854221 222 789999999999884
No 123
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.67 E-value=4.1e-18 Score=116.85 Aligned_cols=100 Identities=7% Similarity=-0.113 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCC-CCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc-----------
Q psy13093 6 CLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA----------- 73 (111)
Q Consensus 6 sl~~~~~~~~f~-~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~----------- 73 (111)
+|+.||+.+.|. +.|.||+|+.+...+..++ +++|||+ |++|+.+++.||+++|+++++++..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 577888999998 8999999977764332222 7899999 9999999999999999987776621
Q ss_pred -------CCccEEecccccchhhhh------chhc--c--CceEEcccccccCC
Q psy13093 74 -------GHPVRFPRGRKIRIMQMI------GFRD--R--LLWGSKQAREEKNE 110 (111)
Q Consensus 74 -------~~~~~~~~gnk~dl~~~~------~~~~--~--~~~~e~SAk~~~n~ 110 (111)
.+.++++++||+||.... ...+ . +.+++|||++|.|+
T Consensus 107 ~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv 160 (301)
T 1u0l_A 107 FLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGI 160 (301)
T ss_dssp HHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCH
Confidence 234589999999995322 2222 4 78999999999985
No 124
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=2.1e-17 Score=118.75 Aligned_cols=108 Identities=17% Similarity=0.059 Sum_probs=75.1
Q ss_pred CcchHHHHHHHHhCC--CCCCCCCceeeeeEEEEEECCeeEEEEEEeCCC----------cccccccCcc-cccCCceee
Q psy13093 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAG----------QEDYDRLRPL-SYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~--f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G----------~~~~~~~~~~-~~~~a~~~~ 67 (111)
|||||||+++++... +...+.+|....+...+..++. .++||||+| +++|..++.. +++.+|+++
T Consensus 205 ~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~l 282 (456)
T 4dcu_A 205 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVA 282 (456)
T ss_dssp TSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEE
T ss_pred CCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEE
Confidence 699999999999765 2334444433334456666665 789999999 8888888764 788999877
Q ss_pred eehhhc----------------CCccEEecccccchhhh--hc------hhc-------cCceEEcccccccCC
Q psy13093 68 SFALHA----------------GHPVRFPRGRKIRIMQM--IG------FRD-------RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~~~----------------~~~~~~~~gnk~dl~~~--~~------~~~-------~~~~~e~SAk~~~n~ 110 (111)
++.+.. .+.++++++||+|+... +. ..+ .++++++||++|.|+
T Consensus 283 lviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 356 (456)
T 4dcu_A 283 VVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRI 356 (456)
T ss_dssp EEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTG
T ss_pred EEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCH
Confidence 776622 34568999999999531 11 111 478999999999986
No 125
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=1.1e-16 Score=114.49 Aligned_cols=108 Identities=16% Similarity=-0.017 Sum_probs=70.0
Q ss_pred CcchHHHHHHHHhCCCC-CCCCCceeeee-EEEEEECCeeEEEEEEeCCCccc---------ccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQED---------YDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~---------~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||++|++..++. ....|.+..+. ...+.+++. .+++|||+|++. ++..+..++++||+++++
T Consensus 11 nvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V 88 (439)
T 1mky_A 11 NVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFV 88 (439)
T ss_dssp TSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEE
Confidence 79999999999987642 12233333333 456667665 478999999875 345567789999988777
Q ss_pred hhhc----------------CCccEEecccccchhhh------hchhc-cC-ceEEcccccccCC
Q psy13093 70 ALHA----------------GHPVRFPRGRKIRIMQM------IGFRD-RL-LWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~~~----------------~~~~~~~~gnk~dl~~~------~~~~~-~~-~~~e~SAk~~~n~ 110 (111)
++.. .+.++++++||+|+... ..+.. ++ .++++||++|.|+
T Consensus 89 ~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 89 VDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp EETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred EECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence 6611 14568999999998543 11111 44 6899999999885
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.65 E-value=2.6e-17 Score=117.71 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=73.4
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCc----------ccccccCc-ccccCCceee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ----------EDYDRLRP-LSYPQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~----------~~~~~~~~-~~~~~a~~~~ 67 (111)
|||||||+++++...+ ...+.+|....+...+..++. .++||||+|+ ++|..++. .+++.+|+++
T Consensus 185 nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~l 262 (436)
T 2hjg_A 185 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVA 262 (436)
T ss_dssp TSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEE
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEE
Confidence 7999999999998876 344444444334456666665 4899999998 66665554 4788999877
Q ss_pred eehhhc----------------CCccEEecccccchhhhhc-----h----h------ccCceEEcccccccCCC
Q psy13093 68 SFALHA----------------GHPVRFPRGRKIRIMQMIG-----F----R------DRLLWGSKQAREEKNEK 111 (111)
Q Consensus 68 ~~~~~~----------------~~~~~~~~gnk~dl~~~~~-----~----~------~~~~~~e~SAk~~~n~~ 111 (111)
++.+.. .+.++++++||+|+..... . . ..++++++||++|+|+.
T Consensus 263 lv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~ 337 (436)
T 2hjg_A 263 VVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH 337 (436)
T ss_dssp EEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred EEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHH
Confidence 766522 2456899999999943111 1 1 15689999999999863
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.65 E-value=4.2e-17 Score=106.36 Aligned_cols=110 Identities=10% Similarity=-0.084 Sum_probs=72.8
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEC-CeeEEEEEEeCCC----------cccccccCcccccC---Cce
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAG----------QEDYDRLRPLSYPQ---TWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~-~~~~~l~iwD~~G----------~~~~~~~~~~~~~~---a~~ 65 (111)
|||||||+++++...+.....++.+.... ....+. .....+.||||+| ++.+..+...|++. +|+
T Consensus 39 ~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (223)
T 4dhe_A 39 NAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCG 118 (223)
T ss_dssp HHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEE
T ss_pred CCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCE
Confidence 68999999999988742222333333221 223343 4557899999999 56667777788876 555
Q ss_pred eeeehh----------------hcCCccEEecccccchhhhhch-------------------hccCceEEcccccccCC
Q psy13093 66 LRSFAL----------------HAGHPVRFPRGRKIRIMQMIGF-------------------RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 66 ~~~~~~----------------~~~~~~~~~~gnk~dl~~~~~~-------------------~~~~~~~e~SAk~~~n~ 110 (111)
++.+.+ ...+.++++++||+|+...... ...++++++||++|.|+
T Consensus 119 vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 119 MILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCH
Confidence 655554 1234568999999999432111 12457899999999985
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.64 E-value=2.7e-16 Score=113.71 Aligned_cols=108 Identities=14% Similarity=-0.008 Sum_probs=60.7
Q ss_pred CcchHHHHHHHHhCC--CCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccC--------cccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLR--------PLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~--f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~--------~~~~~~a~~~~~~~ 70 (111)
|||||||+++++... +...+.+|........+.+++ +.+.+|||+|+.++...+ ..+++++|+++.++
T Consensus 243 nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~Vv 320 (476)
T 3gee_A 243 NAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLL 320 (476)
T ss_dssp TSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEE
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEE
Confidence 799999999999875 334444443333345666665 579999999998876543 45789999877776
Q ss_pred hhc------------------CCccEEecccccchhhhhch-----hc--cCceEEcccccccCC
Q psy13093 71 LHA------------------GHPVRFPRGRKIRIMQMIGF-----RD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 71 ~~~------------------~~~~~~~~gnk~dl~~~~~~-----~~--~~~~~e~SAk~~~n~ 110 (111)
+.. .+.++++++||+|+...... .+ .++++++||++|.|+
T Consensus 321 D~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 321 DLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp ETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCH
Confidence 522 23468999999999543222 12 368999999999885
No 129
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.63 E-value=2.1e-17 Score=120.84 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=81.1
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL-------- 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~-------- 71 (111)
|+|||||+.++....+...+.|++..++. ..+.++ ....+.+|||+|+++|..++..+++.+|+++++++
T Consensus 14 ~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~q 92 (537)
T 3izy_P 14 DHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQ 92 (537)
T ss_dssp TTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHH
T ss_pred CCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHH
Confidence 69999999999988776666777666542 223332 23478999999999999999999999998777765
Q ss_pred --------hcCCccEEecccccchhhhh------chh----------ccCceEEcccccccCC
Q psy13093 72 --------HAGHPVRFPRGRKIRIMQMI------GFR----------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 --------~~~~~~~~~~gnk~dl~~~~------~~~----------~~~~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+.... ... .+++++++||++|.|+
T Consensus 93 t~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 93 TVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp HHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred HHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 22344689999999995311 000 1347899999999986
No 130
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.63 E-value=2.6e-17 Score=115.17 Aligned_cols=73 Identities=21% Similarity=0.062 Sum_probs=53.6
Q ss_pred CCCCCCCceeeeeEE----------EEEECC----eeEEEEEEeCCCcccccccCcccccCCceeeeehhh---------
Q psy13093 16 FPGEYIPTVFDNYSA----------NVMVDG----KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH--------- 72 (111)
Q Consensus 16 f~~~~~~t~~~~~~~----------~i~~~~----~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~--------- 72 (111)
+.+.|.||+++.+.. .+.+++ +.+.++|||++||++|+.+|+.||+++++++++++.
T Consensus 146 ~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e 225 (354)
T 2xtz_A 146 SDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFE 225 (354)
T ss_dssp HSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSS
T ss_pred hcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccccccccc
Confidence 345678887765431 122455 679999999999999999999999999997766531
Q ss_pred ----------------------cCCccEEecccccchh
Q psy13093 73 ----------------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 73 ----------------------~~~~~~~~~gnk~dl~ 88 (111)
..+.+++++|||+||.
T Consensus 226 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 226 DEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 263 (354)
T ss_dssp CTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred ccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchh
Confidence 2455699999999994
No 131
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.63 E-value=7.7e-16 Score=105.61 Aligned_cols=108 Identities=14% Similarity=0.006 Sum_probs=74.0
Q ss_pred CcchHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCeeEEEEEEeCCCccc--------ccccCcccccCCceeeeeh
Q psy13093 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQED--------YDRLRPLSYPQTWSLRSFA 70 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~--~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~--------~~~~~~~~~~~a~~~~~~~ 70 (111)
|||||||+++++..++.. ....|........+ ......+.+|||+|+.+ +......+++++|+++.++
T Consensus 17 nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~--~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~Vv 94 (301)
T 1wf3_A 17 NVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL--TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVV 94 (301)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE--EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred CCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE--EeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 799999999999988742 22233332222222 23467899999999987 4556678899999877766
Q ss_pred h------------------hcCCccEEecccccchhhhhc-h---hc----cCceEEcccccccCC
Q psy13093 71 L------------------HAGHPVRFPRGRKIRIMQMIG-F---RD----RLLWGSKQAREEKNE 110 (111)
Q Consensus 71 ~------------------~~~~~~~~~~gnk~dl~~~~~-~---~~----~~~~~e~SAk~~~n~ 110 (111)
+ ..++.++++++||+|+..... . .+ ...++++||++|.|+
T Consensus 95 D~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 95 DLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQV 160 (301)
T ss_dssp ETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred ECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCH
Confidence 5 112567999999999963222 1 11 245799999998774
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.62 E-value=2e-16 Score=112.89 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=73.8
Q ss_pred CcchHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcc-------cccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL-------SYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~--~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~-------~~~~a~~~~~~~~ 71 (111)
|||||||+++++...+. ..+.++.-....+.+.+.+. ..+.+|||+|+++|..+... +++.+|+++++.+
T Consensus 44 ~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD 122 (423)
T 3qq5_A 44 NVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTD 122 (423)
T ss_dssp STTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECS
T ss_pred CCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEe
Confidence 69999999999988762 23333322223455555544 37899999999999877544 7889998877765
Q ss_pred --------------hcCCccEEecccccchhhhhc------hhc--cCceEEcccccccCCC
Q psy13093 72 --------------HAGHPVRFPRGRKIRIMQMIG------FRD--RLLWGSKQAREEKNEK 111 (111)
Q Consensus 72 --------------~~~~~~~~~~gnk~dl~~~~~------~~~--~~~~~e~SAk~~~n~~ 111 (111)
...+.++++++||+|+..... +++ ++.++++||++|.|+.
T Consensus 123 ~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 123 SAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp SSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred CCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 222456899999999954322 122 7789999999999864
No 133
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.61 E-value=2.3e-16 Score=109.81 Aligned_cols=79 Identities=11% Similarity=-0.010 Sum_probs=61.6
Q ss_pred HHHHHhCCCCCC-------CCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 8 LISYTTNAFPGE-------YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 8 ~~~~~~~~f~~~-------~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
+.|+....|.+. +.||+|.... . +.-..+.++|||++||++|+.+|..||+++++++++++.
T Consensus 126 l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~-~--~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~ 202 (340)
T 4fid_A 126 VKRIAMEDYVPTEEDLIHNRTKTTGIHEY-D--FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLY 202 (340)
T ss_dssp HHHHSSTTCCCCHHHHHHSCCCCCSCEEE-E--EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC
T ss_pred HHHHhcccCCccccceeecccceeeeEEE-E--EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccc
Confidence 456666777766 7788887653 2 333568999999999999999999999999998776642
Q ss_pred -----------------------cCCccEEecccccchhh
Q psy13093 73 -----------------------AGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 73 -----------------------~~~~~~~~~gnk~dl~~ 89 (111)
..+.+++++|||+|+..
T Consensus 203 e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 203 EDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp --CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred cccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 24557999999999953
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.61 E-value=8.6e-16 Score=107.46 Aligned_cols=66 Identities=8% Similarity=-0.027 Sum_probs=51.1
Q ss_pred CCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh---------------------------
Q psy13093 20 YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH--------------------------- 72 (111)
Q Consensus 20 ~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~--------------------------- 72 (111)
+.||+|... ..+.++ .+.++|||++||++|+.+|+.||+++++++++++.
T Consensus 177 ~~~T~Gi~~-~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 177 RVKTTGIVE-THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp CCCCCSEEE-EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred cCceeceEE-EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 345666543 234443 68999999999999999999999999998776551
Q ss_pred ----cCCccEEecccccchh
Q psy13093 73 ----AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 73 ----~~~~~~~~~gnk~dl~ 88 (111)
..+.++++++||+|+.
T Consensus 254 ~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHH
T ss_pred cCccccCCcEEEEEECcCch
Confidence 2356799999999994
No 135
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.61 E-value=2.2e-16 Score=106.86 Aligned_cols=108 Identities=10% Similarity=-0.095 Sum_probs=74.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccC----------cccc--cCCceee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLR----------PLSY--PQTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~----------~~~~--~~a~~~~ 67 (111)
|||||||++++++..+.....|.+..+. ...+..++ ..+.+|||+|+.++..+. ..|+ +.+|+++
T Consensus 13 n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii 90 (274)
T 3i8s_A 13 NSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLI 90 (274)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEE
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEE
Confidence 7999999999998876544455544443 34444444 467889999999887432 2333 6899877
Q ss_pred eehhh--------------cCCccEEecccccchhhhhc-------hhc--cCceEEcccccccCC
Q psy13093 68 SFALH--------------AGHPVRFPRGRKIRIMQMIG-------FRD--RLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~~--------------~~~~~~~~~gnk~dl~~~~~-------~~~--~~~~~e~SAk~~~n~ 110 (111)
.+.+. -.+.++++++||+|+..... +++ +++++++||++|.|+
T Consensus 91 ~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 91 NVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGI 156 (274)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHH
T ss_pred EEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 77661 12456899999999954322 112 789999999999874
No 136
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.60 E-value=2.1e-15 Score=103.58 Aligned_cols=109 Identities=13% Similarity=-0.057 Sum_probs=73.7
Q ss_pred CcchHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCeeEEEEEEeCCCccccc----------ccCcccccCCceeee
Q psy13093 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD----------RLRPLSYPQTWSLRS 68 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~--~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~----------~~~~~~~~~a~~~~~ 68 (111)
|||||||+++++..++.. ....|........... +....+.+|||+|+.++. ..+..+++++|+++.
T Consensus 20 nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~ 98 (308)
T 3iev_A 20 NVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILF 98 (308)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEE
T ss_pred CCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEE
Confidence 799999999999988742 2222222222222222 226789999999997655 566788899998777
Q ss_pred ehhhc-----------------CCccEEecccccchh-hhhc-------hhc----cCceEEcccccccCC
Q psy13093 69 FALHA-----------------GHPVRFPRGRKIRIM-QMIG-------FRD----RLLWGSKQAREEKNE 110 (111)
Q Consensus 69 ~~~~~-----------------~~~~~~~~gnk~dl~-~~~~-------~~~----~~~~~e~SAk~~~n~ 110 (111)
+.+.. .+.++++++||+|+. .... +.+ ...++++||++|.|+
T Consensus 99 VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv 169 (308)
T 3iev_A 99 MIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANL 169 (308)
T ss_dssp EEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSH
T ss_pred EEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCH
Confidence 66521 235689999999996 2111 111 266899999999985
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.58 E-value=6.3e-16 Score=111.90 Aligned_cols=108 Identities=17% Similarity=0.083 Sum_probs=76.6
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcc-ccccc--------CcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE-DYDRL--------RPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~-~~~~~--------~~~~~~~a~~~~~~ 69 (111)
|||||||+++++..++ ...+..|..+.....+.+++ ..+.+|||+|+. ++... ...+++.+|+++.+
T Consensus 253 nvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~V 330 (482)
T 1xzp_A 253 NVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFV 330 (482)
T ss_dssp HHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEE
T ss_pred CCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEE
Confidence 5899999999998753 45555554444456667765 458999999998 66432 34678899987777
Q ss_pred hhh--------------cCCccEEecccccchhhhhchhc-------cCceEEcccccccCC
Q psy13093 70 ALH--------------AGHPVRFPRGRKIRIMQMIGFRD-------RLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~~--------------~~~~~~~~~gnk~dl~~~~~~~~-------~~~~~e~SAk~~~n~ 110 (111)
++. ..+.++++++||+|+...+...+ +++++++||++|.|+
T Consensus 331 vD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 331 LDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGL 392 (482)
T ss_dssp EETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCH
T ss_pred ecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCH
Confidence 662 12446899999999954322111 368999999999985
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.57 E-value=2.4e-16 Score=112.68 Aligned_cols=109 Identities=10% Similarity=-0.031 Sum_probs=66.3
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcc--------cccccCcccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQE--------DYDRLRPLSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~--------~~~~~~~~~~~~a~~~~~~~~ 71 (111)
|||||||++|++...+. ...++.|.... ....+......+.+|||+|++ ++...+..++++||+++.+++
T Consensus 13 nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD 91 (436)
T 2hjg_A 13 NVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVN 91 (436)
T ss_dssp TSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEe
Confidence 79999999999987663 22344454331 222334345679999999996 677788889999998777665
Q ss_pred ----------------hcCCccEEecccccchhhhhc----hhc-cC-ceEEcccccccCC
Q psy13093 72 ----------------HAGHPVRFPRGRKIRIMQMIG----FRD-RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 ----------------~~~~~~~~~~gnk~dl~~~~~----~~~-~~-~~~e~SAk~~~n~ 110 (111)
...+.++++++||+|+..... +.. ++ .++++||++|.|+
T Consensus 92 ~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 92 GREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp TTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCCh
Confidence 223456999999999964321 111 44 6799999999875
No 139
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.57 E-value=1.8e-15 Score=109.44 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=59.3
Q ss_pred ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhcC------------------------CccEEecccccchhh
Q psy13093 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAG------------------------HPVRFPRGRKIRIMQ 89 (111)
Q Consensus 34 ~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~gnk~dl~~ 89 (111)
++.....+.||||+|+++|...+..+++++|+++++++... .+++++++||+|+..
T Consensus 106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 44566789999999999999999999999998777665322 234889999999953
Q ss_pred --hhchh-----------------ccCceEEcccccccCCC
Q psy13093 90 --MIGFR-----------------DRLLWGSKQAREEKNEK 111 (111)
Q Consensus 90 --~~~~~-----------------~~~~~~e~SAk~~~n~~ 111 (111)
..... .+++++++||++|.|+.
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~ 226 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 226 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSS
T ss_pred chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcc
Confidence 11100 04678999999999973
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.56 E-value=1.7e-15 Score=109.21 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=67.3
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeee-EEEEEECCeeEEEEEEeCCCcccccccC--------cccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLR--------PLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~--------~~~~~~a~~~~~~ 69 (111)
|||||||+++++...+ ...+ |+...++ ...+.+++ ..+.+|||+|+.++...+ ..+++.+|+++.+
T Consensus 234 nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~V 310 (462)
T 3geh_A 234 NVGKSSLLNAWSQSDRAIVTDL-PGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLT 310 (462)
T ss_dssp TSSHHHHHHHHHHHHBSCCSCC-TTCCHHHHHHEEEETT--EEEEECC--------------------CCCCSCSEEEEE
T ss_pred CCCHHHHHHHHhCCCcccccCC-CCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEE
Confidence 7999999999998653 3333 4444443 34566665 457999999987765433 3478899987776
Q ss_pred hhh--------------cCCccEEecccccchhhhhchh------ccCceEEcccccccCC
Q psy13093 70 ALH--------------AGHPVRFPRGRKIRIMQMIGFR------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~~--------------~~~~~~~~~gnk~dl~~~~~~~------~~~~~~e~SAk~~~n~ 110 (111)
++. +...++++++||+|+....... ..++++++||++|.|+
T Consensus 311 vD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 311 IDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGI 371 (462)
T ss_dssp EETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSH
T ss_pred eccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCH
Confidence 652 2345789999999996433322 2567899999999885
No 141
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.56 E-value=5.6e-15 Score=104.80 Aligned_cols=63 Identities=16% Similarity=0.061 Sum_probs=48.4
Q ss_pred ceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh------------------------------
Q psy13093 23 TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------------------------------ 72 (111)
Q Consensus 23 t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------------------------------ 72 (111)
|+|..+ +.+.++ .+.++|||++||++|+.+|+.||+++++++++++.
T Consensus 204 TiGi~~-~~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 204 TSGIFE-TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp CCSEEE-EEEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred eeeeEE-EEeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 344433 234444 48999999999999999999999999998776541
Q ss_pred -cCCccEEecccccchh
Q psy13093 73 -AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 73 -~~~~~~~~~gnk~dl~ 88 (111)
..+.+++++|||+||.
T Consensus 281 ~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCSSCCEEEEEECHHHH
T ss_pred cCCCCeEEEEEEChhhh
Confidence 2345699999999994
No 142
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=6.6e-16 Score=108.26 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=55.6
Q ss_pred CcchHHHHHHHH-hCCCCCCCC--------CceeeeeE-EEEEECCeeEEEEEEeCCCc-------ccccccCc------
Q psy13093 1 AVGKTCLLISYT-TNAFPGEYI--------PTVFDNYS-ANVMVDGKPINLGLWDTAGQ-------EDYDRLRP------ 57 (111)
Q Consensus 1 gvGKssl~~~~~-~~~f~~~~~--------~t~~~~~~-~~i~~~~~~~~l~iwD~~G~-------~~~~~~~~------ 57 (111)
|||||||++++. .+.|...+. ||++..+. ..+..++..+.+.+|||+|+ ++|..+++
T Consensus 47 g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~ 126 (361)
T 2qag_A 47 GLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQF 126 (361)
T ss_dssp TSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHH
Confidence 799999999954 455555443 56666543 33444567789999999999 77888876
Q ss_pred -ccccCCce-------------eeeehhh----------------cCCccEEecccccchhhhh----------chhc--
Q psy13093 58 -LSYPQTWS-------------LRSFALH----------------AGHPVRFPRGRKIRIMQMI----------GFRD-- 95 (111)
Q Consensus 58 -~~~~~a~~-------------~~~~~~~----------------~~~~~~~~~gnk~dl~~~~----------~~~~-- 95 (111)
.|++++++ ++.+.+. ..+.++++++||+|+.... ....
T Consensus 127 ~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~ 206 (361)
T 2qag_A 127 ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEH 206 (361)
T ss_dssp HHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC
Confidence 67765443 3233221 1234599999999994211 1111
Q ss_pred cCceEEcccccccC
Q psy13093 96 RLLWGSKQAREEKN 109 (111)
Q Consensus 96 ~~~~~e~SAk~~~n 109 (111)
+++++++||++|.|
T Consensus 207 ~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 207 NIKIYHLPDAESDE 220 (361)
T ss_dssp -CCSCCCC------
T ss_pred CCCEEeCCCcCCCc
Confidence 77899999999987
No 143
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.56 E-value=7.5e-15 Score=103.01 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=43.3
Q ss_pred CCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------------------
Q psy13093 21 IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH---------------------------- 72 (111)
Q Consensus 21 ~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~---------------------------- 72 (111)
.||+|..+ ..+.++ .+.++|||++||++++.+|..||+++++++++++.
T Consensus 186 ~~T~Gi~~-~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 186 RPTKGIHE-YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCCSSEEE-EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CCccceEE-EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 45556554 234443 58999999999999999999999999997766541
Q ss_pred ---cCCccEEecccccchh
Q psy13093 73 ---AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 73 ---~~~~~~~~~gnk~dl~ 88 (111)
..+.++++++||+||.
T Consensus 263 ~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred chhhCCCCEEEEEEChhhh
Confidence 2345699999999995
No 144
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.54 E-value=1.4e-15 Score=110.39 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=76.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------- 72 (111)
++|||||+.++....+.....+.+..+.. ..+..++ ..+.+|||+|+++|..++..+++.+|+++++++.
T Consensus 14 d~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~q 91 (501)
T 1zo1_I 14 DHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQ 91 (501)
T ss_dssp TSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTT
T ss_pred CCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHH
Confidence 68999999999987665444333322221 1222233 4688999999999999999999999987776651
Q ss_pred ---------cCCccEEecccccchhhh-----h-chh------c----cCceEEcccccccCCC
Q psy13093 73 ---------AGHPVRFPRGRKIRIMQM-----I-GFR------D----RLLWGSKQAREEKNEK 111 (111)
Q Consensus 73 ---------~~~~~~~~~gnk~dl~~~-----~-~~~------~----~~~~~e~SAk~~~n~~ 111 (111)
..+.++++++||+|+... . .+. + .++++++||++|.|+.
T Consensus 92 T~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 92 TIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp THHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred HHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 234458999999999531 0 010 1 2679999999999863
No 145
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.53 E-value=3.6e-15 Score=100.72 Aligned_cols=110 Identities=18% Similarity=0.128 Sum_probs=58.4
Q ss_pred CcchHHHHHHHH-hCCCCCCC-------CCceeeeeE-EEEEECCeeEEEEEEeCCCcccc-------cccC-------c
Q psy13093 1 AVGKTCLLISYT-TNAFPGEY-------IPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDY-------DRLR-------P 57 (111)
Q Consensus 1 gvGKssl~~~~~-~~~f~~~~-------~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~-------~~~~-------~ 57 (111)
|||||||++++. .+.+...+ .||++..+. ..+..++..+.+.||||+|...+ ..+. .
T Consensus 18 g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~ 97 (274)
T 3t5d_A 18 GLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFE 97 (274)
T ss_dssp TSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999954 55566666 678877764 44445677789999999998432 2222 2
Q ss_pred cccc-------------CCceeeeehhhc----------------CCccEEecccccchhhhhch------------hcc
Q psy13093 58 LSYP-------------QTWSLRSFALHA----------------GHPVRFPRGRKIRIMQMIGF------------RDR 96 (111)
Q Consensus 58 ~~~~-------------~a~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~~~~------------~~~ 96 (111)
.|++ .+|+++.+.+.. ...++++++||+|+...... ..+
T Consensus 98 ~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~ 177 (274)
T 3t5d_A 98 DYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK 177 (274)
T ss_dssp HHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcC
Confidence 2222 255555555311 15569999999998421111 116
Q ss_pred CceEEcccccccCC
Q psy13093 97 LLWGSKQAREEKNE 110 (111)
Q Consensus 97 ~~~~e~SAk~~~n~ 110 (111)
+.++++||++++++
T Consensus 178 i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 178 IKIYEFPETDDEEE 191 (274)
T ss_dssp CCCCCC--------
T ss_pred CeEEcCCCCCChhH
Confidence 77899999988875
No 146
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.53 E-value=1.5e-14 Score=103.33 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=56.6
Q ss_pred CeeEEEEEEeCCCcccccccCcccccCCceeeeehhh-----------------cCCccEEecccccchhhh--h-----
Q psy13093 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-----------------AGHPVRFPRGRKIRIMQM--I----- 91 (111)
Q Consensus 36 ~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~~gnk~dl~~~--~----- 91 (111)
.....+.||||+|+++|...+..+++.+|+++++++. ...+++++++||+|+... .
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 180 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 180 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHH
Confidence 3457899999999999988888899999987777662 122358899999999531 0
Q ss_pred -----chhc--c-----CceEEcccccccCCC
Q psy13093 92 -----GFRD--R-----LLWGSKQAREEKNEK 111 (111)
Q Consensus 92 -----~~~~--~-----~~~~e~SAk~~~n~~ 111 (111)
.+.. + ++++++||++|.|+.
T Consensus 181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~ 212 (434)
T 1zun_B 181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 212 (434)
T ss_dssp HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred HHHHHHHHHHhCCCccCceEEEEeccCCCCcc
Confidence 0001 3 568999999999863
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.3e-15 Score=97.18 Aligned_cols=81 Identities=17% Similarity=0.065 Sum_probs=58.6
Q ss_pred CcchHHHHHHHHhCCCCC---CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccC----Cceeeeehhhc
Q psy13093 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ----TWSLRSFALHA 73 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~---~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~----a~~~~~~~~~~ 73 (111)
|||||||++++....+.. .+.|+++..+ ..+.+.+||++|++++...+..+++. +++++.+++..
T Consensus 58 g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 58 NSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp TSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETT
T ss_pred CCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 799999999999988754 2334433332 45788999999999999999988887 78876665522
Q ss_pred -------------------------CCccEEecccccchhh
Q psy13093 74 -------------------------GHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 74 -------------------------~~~~~~~~gnk~dl~~ 89 (111)
.+.++++++||+|+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 130 VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 2566899999999964
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.52 E-value=1.5e-15 Score=109.15 Aligned_cols=109 Identities=9% Similarity=-0.079 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCC--------cccccccCcccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAG--------QEDYDRLRPLSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G--------~~~~~~~~~~~~~~a~~~~~~~~ 71 (111)
|||||||++++...++. ...++.|.... ....+......+++|||+| +++++..+..++++||+++++.+
T Consensus 33 nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD 111 (456)
T 4dcu_A 33 NVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVN 111 (456)
T ss_dssp SSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEe
Confidence 79999999999987663 22344455442 3334555567899999999 88888899999999998877766
Q ss_pred h----------------cCCccEEecccccchhhhhchhc-----cC-ceEEcccccccCC
Q psy13093 72 H----------------AGHPVRFPRGRKIRIMQMIGFRD-----RL-LWGSKQAREEKNE 110 (111)
Q Consensus 72 ~----------------~~~~~~~~~gnk~dl~~~~~~~~-----~~-~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+........ ++ ..+++||++|.|+
T Consensus 112 ~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 112 GREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp SSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTH
T ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccch
Confidence 1 23456899999999964322111 22 3579999999875
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.51 E-value=3.1e-14 Score=101.99 Aligned_cols=75 Identities=9% Similarity=-0.061 Sum_probs=55.5
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhhcCC-----------------------cc-EEecccccchhh---
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAGH-----------------------PV-RFPRGRKIRIMQ--- 89 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~-~~~~gnk~dl~~--- 89 (111)
....+.||||+|+++|......+++.+|+++++++.... .+ ++++.||+|+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 446899999999999998888999999987776653221 23 789999999831
Q ss_pred -----------hhchh--------ccCceEEcccccccCCC
Q psy13093 90 -----------MIGFR--------DRLLWGSKQAREEKNEK 111 (111)
Q Consensus 90 -----------~~~~~--------~~~~~~e~SAk~~~n~~ 111 (111)
...+. .+++++++||++|.|+.
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~ 213 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLK 213 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccc
Confidence 00111 13568999999999963
No 150
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.50 E-value=1.1e-14 Score=104.20 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=58.1
Q ss_pred ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhcCC------------------------ccEEecccccchhh
Q psy13093 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAGH------------------------PVRFPRGRKIRIMQ 89 (111)
Q Consensus 34 ~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~~------------------------~~~~~~gnk~dl~~ 89 (111)
++.....+.||||+|+++|...+..+++.+|+++++++.... +.+++++||+|+..
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 344567899999999999998888999999998777663322 34789999999954
Q ss_pred h----h-------chhc----------cCceEEcccccccCC
Q psy13093 90 M----I-------GFRD----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 90 ~----~-------~~~~----------~~~~~e~SAk~~~n~ 110 (111)
. . ...+ +++++++||++|.|+
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTT
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccc
Confidence 1 0 0111 267999999999986
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.50 E-value=2.7e-14 Score=102.13 Aligned_cols=108 Identities=19% Similarity=0.069 Sum_probs=66.3
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccC------------cccccCCcee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLR------------PLSYPQTWSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~------------~~~~~~a~~~ 66 (111)
|||||||+++++...+ ...+..|........+.+++. .+.+|||+|+.++..+. ..+++.++++
T Consensus 190 gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~v 267 (439)
T 1mky_A 190 NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVV 267 (439)
T ss_dssp TSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEE
T ss_pred CCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEE
Confidence 7999999999998765 333333333333456677776 57899999986554332 1345677776
Q ss_pred eeehh----------------hcCCccEEecccccchhhhhc---------hhc------cCceEEcccccccCC
Q psy13093 67 RSFAL----------------HAGHPVRFPRGRKIRIMQMIG---------FRD------RLLWGSKQAREEKNE 110 (111)
Q Consensus 67 ~~~~~----------------~~~~~~~~~~gnk~dl~~~~~---------~~~------~~~~~e~SAk~~~n~ 110 (111)
+.+.+ ...+.++++++||+|+..... ..+ .++++++||++|.|+
T Consensus 268 llv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 342 (439)
T 1mky_A 268 VIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNI 342 (439)
T ss_dssp EEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCH
Confidence 55543 123456899999999953211 111 467899999999985
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.50 E-value=4.5e-14 Score=100.21 Aligned_cols=110 Identities=16% Similarity=0.046 Sum_probs=66.6
Q ss_pred CcchHHHHHHHH---hCCCCCCCCC--ceeeeeE-EEEEE-------------C--Ce----eEEEEEEeCCCccccccc
Q psy13093 1 AVGKTCLLISYT---TNAFPGEYIP--TVFDNYS-ANVMV-------------D--GK----PINLGLWDTAGQEDYDRL 55 (111)
Q Consensus 1 gvGKssl~~~~~---~~~f~~~~~~--t~~~~~~-~~i~~-------------~--~~----~~~l~iwD~~G~~~~~~~ 55 (111)
++|||||+.++. .+.+..++.+ |+...|. ..+.. + +. ...+.+|||+|+++|...
T Consensus 18 d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~ 97 (408)
T 1s0u_A 18 DHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMAT 97 (408)
T ss_dssp TSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHH
Confidence 689999999998 3455555556 7766653 22211 1 11 378999999999999877
Q ss_pred CcccccCCceeeeehhhc------------------CCccEEecccccchhhhh----------chh-----ccCceEEc
Q psy13093 56 RPLSYPQTWSLRSFALHA------------------GHPVRFPRGRKIRIMQMI----------GFR-----DRLLWGSK 102 (111)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~------------------~~~~~~~~gnk~dl~~~~----------~~~-----~~~~~~e~ 102 (111)
....+..+|+++++.+.. ..+++++++||+|+.... .+. .+++++++
T Consensus 98 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~v 177 (408)
T 1s0u_A 98 MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPI 177 (408)
T ss_dssp HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC
T ss_pred HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEe
Confidence 777777889876666522 223588999999994311 111 25689999
Q ss_pred ccccccCC
Q psy13093 103 QAREEKNE 110 (111)
Q Consensus 103 SAk~~~n~ 110 (111)
||++|.|+
T Consensus 178 SA~~g~gi 185 (408)
T 1s0u_A 178 SAHHEANI 185 (408)
T ss_dssp ------CH
T ss_pred eCCCCCCH
Confidence 99999885
No 153
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.7e-14 Score=104.18 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=57.8
Q ss_pred CCeeEEEEEEeCCCcccccccCcccccCCceeeeehhhc------------------------CCccEEecccccchhh-
Q psy13093 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------------------------GHPVRFPRGRKIRIMQ- 89 (111)
Q Consensus 35 ~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~gnk~dl~~- 89 (111)
......+.||||+|+++|...+..+++.+|+++++++.. ..+.+++++||+|+..
T Consensus 241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 345678999999999999999999999999877776532 2234889999999853
Q ss_pred -hh-------chh----------ccCceEEcccccccCC
Q psy13093 90 -MI-------GFR----------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 90 -~~-------~~~----------~~~~~~e~SAk~~~n~ 110 (111)
.. ... .+++++++||++|.|+
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI 359 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 359 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTT
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCc
Confidence 00 000 0468899999999986
No 154
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.48 E-value=1.4e-13 Score=97.59 Aligned_cols=72 Identities=10% Similarity=-0.051 Sum_probs=55.9
Q ss_pred EEEEEEeCCCcccccccCcccccCCceeeeehhh------------------cCCccEEecccccchhhhh-------ch
Q psy13093 39 INLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------------------AGHPVRFPRGRKIRIMQMI-------GF 93 (111)
Q Consensus 39 ~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~~gnk~dl~~~~-------~~ 93 (111)
..+.+|||+|+++|......+++.+|+++++.+. ...++++++.||+|+.... ..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i 154 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI 154 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHH
Confidence 7899999999999999999999999987776652 2224689999999994211 11
Q ss_pred h--------ccCceEEcccccccCC
Q psy13093 94 R--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 94 ~--------~~~~~~e~SAk~~~n~ 110 (111)
. .+++++++||++|.|+
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi 179 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINI 179 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSH
T ss_pred HHHHHhhCCCCCEEEEEECCCCcCh
Confidence 1 1567999999999985
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.45 E-value=1.4e-13 Score=97.71 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=74.4
Q ss_pred CcchHHHHHHHH---hCCCCCCCCC--ceeeeeEE-EEEE-------------C--Ce----eEEEEEEeCCCccccccc
Q psy13093 1 AVGKTCLLISYT---TNAFPGEYIP--TVFDNYSA-NVMV-------------D--GK----PINLGLWDTAGQEDYDRL 55 (111)
Q Consensus 1 gvGKssl~~~~~---~~~f~~~~~~--t~~~~~~~-~i~~-------------~--~~----~~~l~iwD~~G~~~~~~~ 55 (111)
++|||||+.++. .+.+..+..+ |+...|.. .+.. + +. ...+.+|||+|+++|...
T Consensus 20 ~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~ 99 (410)
T 1kk1_A 20 DHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTT 99 (410)
T ss_dssp TSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHHH
Confidence 689999999998 3445555555 66665532 2211 1 11 378999999999999776
Q ss_pred CcccccCCceeeeehhhc------------------CCccEEecccccchhhhh----------chh-----ccCceEEc
Q psy13093 56 RPLSYPQTWSLRSFALHA------------------GHPVRFPRGRKIRIMQMI----------GFR-----DRLLWGSK 102 (111)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~------------------~~~~~~~~gnk~dl~~~~----------~~~-----~~~~~~e~ 102 (111)
.......+|+++++.+.. ..++++++.||+|+.... .+. .+.+++++
T Consensus 100 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~v 179 (410)
T 1kk1_A 100 MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPI 179 (410)
T ss_dssp HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEEC
T ss_pred HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEe
Confidence 666677789876666522 223578999999994311 111 25689999
Q ss_pred ccccccCC
Q psy13093 103 QAREEKNE 110 (111)
Q Consensus 103 SAk~~~n~ 110 (111)
||++|.|+
T Consensus 180 SA~~g~gi 187 (410)
T 1kk1_A 180 SALHGANI 187 (410)
T ss_dssp BTTTTBSH
T ss_pred eCCCCCCH
Confidence 99999985
No 156
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.45 E-value=8.3e-14 Score=93.06 Aligned_cols=86 Identities=13% Similarity=-0.007 Sum_probs=58.7
Q ss_pred CcchHHHHHHHHhCC-CCCCCCCc-eeeee-EEEEEECCeeEEEEEEeCCCcccccccC-----------cccccCCcee
Q psy13093 1 AVGKTCLLISYTTNA-FPGEYIPT-VFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLR-----------PLSYPQTWSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~-f~~~~~~t-~~~~~-~~~i~~~~~~~~l~iwD~~G~~~~~~~~-----------~~~~~~a~~~ 66 (111)
|||||||+++++... |...+.|+ +.... ...+..++ ..+.||||+|+.++.... ..+++++|++
T Consensus 32 g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~i 109 (260)
T 2xtp_A 32 GTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVL 109 (260)
T ss_dssp TSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEE
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEE
Confidence 799999999999877 66666664 33333 23444443 568999999988764332 2377899987
Q ss_pred eeehh----------------hc-----CCccEEecccccchh
Q psy13093 67 RSFAL----------------HA-----GHPVRFPRGRKIRIM 88 (111)
Q Consensus 67 ~~~~~----------------~~-----~~~~~~~~gnk~dl~ 88 (111)
+.+.+ .. ..++++++.||+|+.
T Consensus 110 l~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 110 LLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp EEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 66654 11 334567777799995
No 157
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=2e-13 Score=98.50 Aligned_cols=73 Identities=12% Similarity=-0.083 Sum_probs=45.1
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehhhcCC-----------------------cc-EEecccccchhh----
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAGH-----------------------PV-RFPRGRKIRIMQ---- 89 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~-~~~~gnk~dl~~---- 89 (111)
...+.||||+|+++|......+++.+|+++++++.... .+ +++++||+|+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 46789999999999999888999999987777663321 23 789999999942
Q ss_pred ----------hhchh---------ccCceEEcccccccCC
Q psy13093 90 ----------MIGFR---------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 90 ----------~~~~~---------~~~~~~e~SAk~~~n~ 110 (111)
...+. .+++++++||++|.|+
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i 239 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 239 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccc
Confidence 11111 1456899999999996
No 158
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.42 E-value=4.2e-14 Score=104.66 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=68.7
Q ss_pred CcchHHHHHHHHhC--CCC-----CCCCC------ceeeeeE-EEEEE-----CCeeEEEEEEeCCCcccccccCccccc
Q psy13093 1 AVGKTCLLISYTTN--AFP-----GEYIP------TVFDNYS-ANVMV-----DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~-----~~~~~------t~~~~~~-~~i~~-----~~~~~~l~iwD~~G~~~~~~~~~~~~~ 61 (111)
++|||||+.+++.. .+. ..+.. +.|..+. ..+.+ ++..+.++||||+|+++|...+..+++
T Consensus 14 d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~ 93 (599)
T 3cb4_D 14 DHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLA 93 (599)
T ss_dssp ----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHH
Confidence 68999999999862 111 11111 2233321 11222 566799999999999999999999999
Q ss_pred CCceeeeehhhc----------------CCccEEecccccchhhh------hchhc--cC---ceEEcccccccCC
Q psy13093 62 QTWSLRSFALHA----------------GHPVRFPRGRKIRIMQM------IGFRD--RL---LWGSKQAREEKNE 110 (111)
Q Consensus 62 ~a~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~------~~~~~--~~---~~~e~SAk~~~n~ 110 (111)
.+|+++++++.. .+.++++++||+|+..+ ..+.+ ++ .++++||++|.|+
T Consensus 94 ~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI 169 (599)
T 3cb4_D 94 ACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGV 169 (599)
T ss_dssp HCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTH
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCc
Confidence 999987777621 24468999999999542 11222 33 4899999999885
No 159
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.42 E-value=3.6e-13 Score=96.93 Aligned_cols=107 Identities=9% Similarity=-0.070 Sum_probs=73.9
Q ss_pred CcchHHHHHHHHhC--CCCC-------------------------------CCCCceeeeeEEEEEECCeeEEEEEEeCC
Q psy13093 1 AVGKTCLLISYTTN--AFPG-------------------------------EYIPTVFDNYSANVMVDGKPINLGLWDTA 47 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~~-------------------------------~~~~t~~~~~~~~i~~~~~~~~l~iwD~~ 47 (111)
++|||||+.+++.. .+.. +.-.|+...+. .++.....+.||||+
T Consensus 17 ~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~---~~~~~~~~~~iiDtP 93 (458)
T 1f60_A 17 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW---KFETPKYQVTVIDAP 93 (458)
T ss_dssp TSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE---EEECSSEEEEEEECC
T ss_pred CCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE---EEecCCceEEEEECC
Confidence 68999999999864 2321 01234433332 234456789999999
Q ss_pred CcccccccCcccccCCceeeeehhhc-----------------------CC-ccEEecccccchhh--hh-------chh
Q psy13093 48 GQEDYDRLRPLSYPQTWSLRSFALHA-----------------------GH-PVRFPRGRKIRIMQ--MI-------GFR 94 (111)
Q Consensus 48 G~~~~~~~~~~~~~~a~~~~~~~~~~-----------------------~~-~~~~~~gnk~dl~~--~~-------~~~ 94 (111)
|+++|......+++.+|+++++++.. .+ +.+++++||+|+.. .. ...
T Consensus 94 Gh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~ 173 (458)
T 1f60_A 94 GHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETS 173 (458)
T ss_dssp CCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHH
Confidence 99999988889999999877766521 12 23789999999962 10 011
Q ss_pred ---c-------cCceEEcccccccCC
Q psy13093 95 ---D-------RLLWGSKQAREEKNE 110 (111)
Q Consensus 95 ---~-------~~~~~e~SAk~~~n~ 110 (111)
. +++++++||++|.|+
T Consensus 174 ~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 174 NFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp HHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred HHHHHcCCCccCceEEEeecccCcCc
Confidence 0 268999999999996
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.41 E-value=9.6e-14 Score=102.71 Aligned_cols=110 Identities=18% Similarity=0.077 Sum_probs=71.2
Q ss_pred CcchHHHHHHHHhC--CCC-----CCCCCc------eeeeeE---EEEEE---CCeeEEEEEEeCCCcccccccCccccc
Q psy13093 1 AVGKTCLLISYTTN--AFP-----GEYIPT------VFDNYS---ANVMV---DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~-----~~~~~t------~~~~~~---~~i~~---~~~~~~l~iwD~~G~~~~~~~~~~~~~ 61 (111)
++|||||+.+++.. .+. ..+..+ .|..+. ..+.+ ++..+.++||||+|+++|...+..+++
T Consensus 16 d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~ 95 (600)
T 2ywe_A 16 DHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALA 95 (600)
T ss_dssp -CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHH
Confidence 68999999999852 221 111111 121111 11222 456789999999999999988888999
Q ss_pred CCceeeeehhh----------------cCCccEEecccccchhhhh------chhc--cC---ceEEcccccccCC
Q psy13093 62 QTWSLRSFALH----------------AGHPVRFPRGRKIRIMQMI------GFRD--RL---LWGSKQAREEKNE 110 (111)
Q Consensus 62 ~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~~~~------~~~~--~~---~~~e~SAk~~~n~ 110 (111)
.+|+++++++. ..+.++++++||+|+..+. .+.+ ++ .++++||++|.|+
T Consensus 96 ~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI 171 (600)
T 2ywe_A 96 ACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGI 171 (600)
T ss_dssp TCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSH
T ss_pred hCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCc
Confidence 99997777662 1244589999999995321 1112 33 4799999999985
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.40 E-value=2.6e-14 Score=105.73 Aligned_cols=109 Identities=14% Similarity=0.007 Sum_probs=74.7
Q ss_pred CcchHHHHHHHHhCCCCC----CCCCceeeeeEEEEE-------------ECCeeEEEEEEeCCCcccccccCcccccCC
Q psy13093 1 AVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVM-------------VDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~----~~~~t~~~~~~~~i~-------------~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a 63 (111)
++|||||+.++....+.. ...+++|..+...-. ++.....+++|||+|+++|..++..+++.+
T Consensus 15 d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~a 94 (594)
T 1g7s_A 15 DHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALA 94 (594)
T ss_dssp TSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSC
T ss_pred CCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhC
Confidence 699999999998765533 233455654431000 001123699999999999999999999999
Q ss_pred ceeeeehhhc----------------CCccEEecccccchhhhhchhccCceEEcccccccC
Q psy13093 64 WSLRSFALHA----------------GHPVRFPRGRKIRIMQMIGFRDRLLWGSKQAREEKN 109 (111)
Q Consensus 64 ~~~~~~~~~~----------------~~~~~~~~gnk~dl~~~~~~~~~~~~~e~SAk~~~n 109 (111)
|+++++++.. .+.++++++||+|+........++.++++||+++.+
T Consensus 95 D~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 95 DLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred CEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9887776622 245699999999996433223366777777776543
No 162
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.40 E-value=6.1e-13 Score=92.91 Aligned_cols=107 Identities=16% Similarity=-0.115 Sum_probs=67.5
Q ss_pred CcchHHHHHHHHhCCCCCCCC--CceeeeeEEEEEECCeeEEEEEEeCCCccccccc---------CcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYI--PTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL---------RPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~--~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~---------~~~~~~~a~~~~~~ 69 (111)
|||||||++++....+..... +|..... ..+.. ....+.+|||+|...+..- ...+...+|+++.+
T Consensus 177 gvGKSTLin~L~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV 253 (357)
T 2e87_A 177 NVGKSTLLKALTTAKPEIASYPFTTRGINV-GQFED--GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYI 253 (357)
T ss_dssp TSSHHHHHHHHCSSCCEEECCTTCSSCEEE-EEEEE--TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEE
T ss_pred CCCHHHHHHHHhCCCCccCCCCCeeeceeE-EEEEe--cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEE
Confidence 799999999999876532211 1222211 22222 3567999999998664211 11344567876655
Q ss_pred hh---------------------hcCCccEEecccccchhhhhchh--------ccCceEEcccccccCC
Q psy13093 70 AL---------------------HAGHPVRFPRGRKIRIMQMIGFR--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~---------------------~~~~~~~~~~gnk~dl~~~~~~~--------~~~~~~e~SAk~~~n~ 110 (111)
.+ ...+.++++++||+|+....... .+++++++||++|+|+
T Consensus 254 ~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 254 FDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI 323 (357)
T ss_dssp ECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred EeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence 54 11256789999999995422221 1678999999999985
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.40 E-value=8.1e-14 Score=98.78 Aligned_cols=109 Identities=15% Similarity=-0.074 Sum_probs=73.5
Q ss_pred CcchHHHHHHHHhC--------CCCCC-------CCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCc
Q psy13093 1 AVGKTCLLISYTTN--------AFPGE-------YIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTW 64 (111)
Q Consensus 1 gvGKssl~~~~~~~--------~f~~~-------~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~ 64 (111)
++|||||+.+++.. .|... ..++.|..+. ..+.++.....+.||||+|+++|......+++.+|
T Consensus 21 ~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD 100 (405)
T 2c78_A 21 DHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMD 100 (405)
T ss_dssp TSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCC
Confidence 68999999999873 33211 0012232221 33345555678999999999999888888999999
Q ss_pred eeeeehhhc----------------CCcc-EEecccccchhhhh---c--------hh-------ccCceEEcccccccC
Q psy13093 65 SLRSFALHA----------------GHPV-RFPRGRKIRIMQMI---G--------FR-------DRLLWGSKQAREEKN 109 (111)
Q Consensus 65 ~~~~~~~~~----------------~~~~-~~~~gnk~dl~~~~---~--------~~-------~~~~~~e~SAk~~~n 109 (111)
+++++.+.. .+.+ +++++||+|+.... . +. ++.+++++||++|.|
T Consensus 101 ~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 101 GAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 877776521 1234 78999999995210 0 11 136799999999976
No 164
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.40 E-value=1.5e-13 Score=99.53 Aligned_cols=107 Identities=15% Similarity=-0.061 Sum_probs=70.8
Q ss_pred CcchHHHHHHHHhCC-------CCCCCC--CceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNA-------FPGEYI--PTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~-------f~~~~~--~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~ 71 (111)
++|||||+.++.... +..+.. .|+...+. .+.++ ...+.+|||+|+++|......+++.+|+++++.+
T Consensus 29 d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~-~~~~~--~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvd 105 (482)
T 1wb1_A 29 DHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFS-AFKLE--NYRITLVDAPGHADLIRAVVSAADIIDLALIVVD 105 (482)
T ss_dssp TSSHHHHHHHHHTTC--------------------CCC-EEEET--TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEE
T ss_pred CChHHHHHHHHHCCCcccccccccccccCccEEecceE-EEEEC--CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEe
Confidence 689999999999765 333332 23333332 23333 3689999999999998888889999998777765
Q ss_pred hcC----------------CccEEecccccchhhhh----------chh------ccCceEEcccccccCC
Q psy13093 72 HAG----------------HPVRFPRGRKIRIMQMI----------GFR------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~~~----------------~~~~~~~gnk~dl~~~~----------~~~------~~~~~~e~SAk~~~n~ 110 (111)
... +.+.+++.||+|+.... ... .+.+++++||++|+|+
T Consensus 106 a~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI 176 (482)
T 1wb1_A 106 AKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGV 176 (482)
T ss_dssp TTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTH
T ss_pred cCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCH
Confidence 221 23458999999984211 110 1467899999999985
No 165
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.39 E-value=2.7e-14 Score=93.26 Aligned_cols=108 Identities=13% Similarity=0.058 Sum_probs=70.5
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-------------EEEEEC-CeeEEEEEEeCCCcccccccC----cccccC
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-------------ANVMVD-GKPINLGLWDTAGQEDYDRLR----PLSYPQ 62 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-------------~~i~~~-~~~~~l~iwD~~G~~~~~~~~----~~~~~~ 62 (111)
|||||||+.+|+...|...+.++++.++. +.+.++ +..+.+.+||+ ++.++.+. ..++.+
T Consensus 48 gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l~~~~~d~~~id 125 (226)
T 2hf9_A 48 GSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALEDLNLDEIDLLFIE 125 (226)
T ss_dssp TSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTTSCGGGCSEEEEE
T ss_pred CCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHHHhcCCCCEEEEe
Confidence 79999999999988777777888887753 444454 44456667776 56666555 445544
Q ss_pred Cce--------------eeeehh--hcCCccE----------Eecccccchhhhh--chh----------ccCceEEccc
Q psy13093 63 TWS--------------LRSFAL--HAGHPVR----------FPRGRKIRIMQMI--GFR----------DRLLWGSKQA 104 (111)
Q Consensus 63 a~~--------------~~~~~~--~~~~~~~----------~~~gnk~dl~~~~--~~~----------~~~~~~e~SA 104 (111)
+.+ .+.+.+ .....+. ++++||+|+.... ... .+++++++||
T Consensus 126 ~~g~i~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 205 (226)
T 2hf9_A 126 NVGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSL 205 (226)
T ss_dssp CCSCSSGGGGCCCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCT
T ss_pred CCCCccCcchhhhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 433 222332 1222334 9999999995421 111 1568999999
Q ss_pred ccccCC
Q psy13093 105 REEKNE 110 (111)
Q Consensus 105 k~~~n~ 110 (111)
++|.|+
T Consensus 206 ~~g~gv 211 (226)
T 2hf9_A 206 KTMEGF 211 (226)
T ss_dssp TTCTTH
T ss_pred cCCCCH
Confidence 999885
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.39 E-value=2.8e-13 Score=95.83 Aligned_cols=106 Identities=14% Similarity=-0.089 Sum_probs=71.9
Q ss_pred CcchHHHHHHHHhC-------CCCC-----------CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccC
Q psy13093 1 AVGKTCLLISYTTN-------AFPG-----------EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62 (111)
Q Consensus 1 gvGKssl~~~~~~~-------~f~~-----------~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~ 62 (111)
++|||||+.+++.. .|.. ..-.|+... .+.++.....+.||||+|+++|......+++.
T Consensus 13 ~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~---~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~ 89 (397)
T 1d2e_A 13 DHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA---HVEYSTAARHYAHTDCPGHADYVKNMITGTAP 89 (397)
T ss_dssp TSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECE---EEEEECSSCEEEEEECSSHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEee---eEEeccCCeEEEEEECCChHHHHHHHHhhHhh
Confidence 68999999999863 2211 011233322 22344456789999999999998888889999
Q ss_pred Cceeeeehhhc----------------CCcc-EEecccccchhhhh-----------chhc-------cCceEEcccccc
Q psy13093 63 TWSLRSFALHA----------------GHPV-RFPRGRKIRIMQMI-----------GFRD-------RLLWGSKQAREE 107 (111)
Q Consensus 63 a~~~~~~~~~~----------------~~~~-~~~~gnk~dl~~~~-----------~~~~-------~~~~~e~SAk~~ 107 (111)
+|+++++++.. .+.+ +++++||+|+.... .+.. +++++++||++|
T Consensus 90 aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g 169 (397)
T 1d2e_A 90 LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA 169 (397)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhc
Confidence 99877776521 1334 67999999995210 0111 368999999998
Q ss_pred cC
Q psy13093 108 KN 109 (111)
Q Consensus 108 ~n 109 (111)
.|
T Consensus 170 ~n 171 (397)
T 1d2e_A 170 LE 171 (397)
T ss_dssp HT
T ss_pred cc
Confidence 76
No 167
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.38 E-value=1.6e-13 Score=101.49 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=44.3
Q ss_pred eeEEEEEEeCCCcccccccCcccccCCceeeeehhhcC------------------------CccEEecccccchhh---
Q psy13093 37 KPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAG------------------------HPVRFPRGRKIRIMQ--- 89 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~gnk~dl~~--- 89 (111)
....+.||||+|+++|......+++.+|+++++++... -+.+++++||+|+..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 34688999999999999999999999998766655321 123788999999953
Q ss_pred ---------hhchh--------ccCceEEcccccccCC
Q psy13093 90 ---------MIGFR--------DRLLWGSKQAREEKNE 110 (111)
Q Consensus 90 ---------~~~~~--------~~~~~~e~SAk~~~n~ 110 (111)
..... .+++++.+||++|.|+
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI 370 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNL 370 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSS
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccc
Confidence 01111 1346899999999986
No 168
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.37 E-value=1.8e-13 Score=93.76 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=52.4
Q ss_pred CcchHHHHHHHHhC-CCCCCC--------CCceeeeeE-EEEEECCeeEEEEEEeCCCc-------ccccccCc------
Q psy13093 1 AVGKTCLLISYTTN-AFPGEY--------IPTVFDNYS-ANVMVDGKPINLGLWDTAGQ-------EDYDRLRP------ 57 (111)
Q Consensus 1 gvGKssl~~~~~~~-~f~~~~--------~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~-------~~~~~~~~------ 57 (111)
|||||||++++... .++..+ .+++..... ..+..++....+++||++|+ +++..+..
T Consensus 28 G~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~ 107 (301)
T 2qnr_A 28 GLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQF 107 (301)
T ss_dssp TSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 79999999997654 555443 233332221 12222455689999999998 66666665
Q ss_pred -ccccCCce-------------eeeehhhc----------------CCccEEecccccchhhh--h--------chhc--
Q psy13093 58 -LSYPQTWS-------------LRSFALHA----------------GHPVRFPRGRKIRIMQM--I--------GFRD-- 95 (111)
Q Consensus 58 -~~~~~a~~-------------~~~~~~~~----------------~~~~~~~~gnk~dl~~~--~--------~~~~-- 95 (111)
.|++++++ ++.+.... .+..+++++||.|+... + ....
T Consensus 108 ~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~ 187 (301)
T 2qnr_A 108 ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEH 187 (301)
T ss_dssp HHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 56554432 32332211 12358999999999421 1 1111
Q ss_pred cCceEEcccccccCC
Q psy13093 96 RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 ~~~~~e~SAk~~~n~ 110 (111)
++.++++||++| |+
T Consensus 188 ~~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 188 NIKIYHLPDAES-DE 201 (301)
T ss_dssp TCCCCCCC-------
T ss_pred CCeEEecCCccc-cc
Confidence 788999999999 76
No 169
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.36 E-value=3.5e-12 Score=87.33 Aligned_cols=108 Identities=14% Similarity=-0.001 Sum_probs=70.5
Q ss_pred CcchHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCeeEEEEEEeCCCcc---------cccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE---------DYDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~--~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~---------~~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||+++++...+. .....|........ +......+.+|||+|.. .+......+++.+|+++.+
T Consensus 18 nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi--~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~V 95 (301)
T 1ega_A 18 NVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI--HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFV 95 (301)
T ss_dssp SSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE--EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEE
T ss_pred CCCHHHHHHHHHCCCccccCCCCCcceeeEEEE--EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEE
Confidence 79999999999987652 12222222111112 22335678999999997 3456667889999986664
Q ss_pred hh---------------hcCCccEEecccccchhh-hhc-------hhc--cC-ceEEcccccccCC
Q psy13093 70 AL---------------HAGHPVRFPRGRKIRIMQ-MIG-------FRD--RL-LWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~---------------~~~~~~~~~~gnk~dl~~-~~~-------~~~--~~-~~~e~SAk~~~n~ 110 (111)
.+ ...+.+.++++||+|+.. ... +.+ ++ .++.+||++|.|+
T Consensus 96 vd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 96 VEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp EETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 44 112556889999999964 111 112 33 5799999999874
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.36 E-value=4e-13 Score=91.08 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=49.5
Q ss_pred EEEEEEeCCCcc-------------cccccCcccccCCceeee-ehh-----------------hcCCccEEecccccch
Q psy13093 39 INLGLWDTAGQE-------------DYDRLRPLSYPQTWSLRS-FAL-----------------HAGHPVRFPRGRKIRI 87 (111)
Q Consensus 39 ~~l~iwD~~G~~-------------~~~~~~~~~~~~a~~~~~-~~~-----------------~~~~~~~~~~gnk~dl 87 (111)
..+.+|||+|.. .+..++..|++.++++++ +.+ ...+.++++++||+|+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcccc
Confidence 689999999964 456677889999987664 332 1123468999999999
Q ss_pred hhhhc----hhc----c-----CceEEcccccccCC
Q psy13093 88 MQMIG----FRD----R-----LLWGSKQAREEKNE 110 (111)
Q Consensus 88 ~~~~~----~~~----~-----~~~~e~SAk~~~n~ 110 (111)
..... ..+ . ..++++||++|.|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 205 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp SCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSC
T ss_pred CCCCchHHHHHhCCcCcCCCCcEEEECCChhhcccc
Confidence 53211 111 1 24678999999986
No 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.35 E-value=1.7e-12 Score=87.14 Aligned_cols=85 Identities=11% Similarity=0.037 Sum_probs=57.9
Q ss_pred CcchHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCccccc---------CCceeeee
Q psy13093 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP---------QTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f--~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~---------~a~~~~~~ 69 (111)
|||||||+++++...+ ...+.++........+..+ ...+.||||+|++++..+.+.+++ ++++++.+
T Consensus 46 g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V 123 (262)
T 3def_A 46 GVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYV 123 (262)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEE
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 7999999999998874 4444443333333334444 458999999999999887776665 67776555
Q ss_pred hh-------------------hcC---CccEEecccccch
Q psy13093 70 AL-------------------HAG---HPVRFPRGRKIRI 87 (111)
Q Consensus 70 ~~-------------------~~~---~~~~~~~gnk~dl 87 (111)
.+ ... ..++++++||+|+
T Consensus 124 ~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 124 DRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp EESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred EcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 21 111 1257899999998
No 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.33 E-value=2e-13 Score=95.09 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=69.8
Q ss_pred CcchHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEECCeeEEEEEEeCCCcc----cccccCcccccC---Cceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAFP-GEYI-PTVFDNYSANVMVDGKPINLGLWDTAGQE----DYDRLRPLSYPQ---TWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~~-~t~~~~~~~~i~~~~~~~~l~iwD~~G~~----~~~~~~~~~~~~---a~~~~~~~~ 71 (111)
|||||||+++++..++. ..|. +|....+ ..+.+++ ...+.|||++|+. ++..+...|++. +++++.+++
T Consensus 168 nvGKSTLln~L~~~~~~i~~~~ftTl~p~~-g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD 245 (342)
T 1lnz_A 168 SVGKSTLLSVVSSAKPKIADYHFTTLVPNL-GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVID 245 (342)
T ss_dssp TSSHHHHHHHSEEECCEESSTTSSCCCCCE-EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEE
T ss_pred CCCHHHHHHHHHcCCCccccCCccccCceE-EEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEE
Confidence 69999999999977532 2222 2222222 2233443 2578999999964 345566666664 787666554
Q ss_pred h-------------------------cCCccEEecccccchhhhh----chhc--c--CceEEcccccccCC
Q psy13093 72 H-------------------------AGHPVRFPRGRKIRIMQMI----GFRD--R--LLWGSKQAREEKNE 110 (111)
Q Consensus 72 ~-------------------------~~~~~~~~~gnk~dl~~~~----~~~~--~--~~~~e~SAk~~~n~ 110 (111)
. ..+.++++++||+|+.... .+++ . ..++++||++++|+
T Consensus 246 ~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 246 MSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGL 317 (342)
T ss_dssp SSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTT
T ss_pred CCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCH
Confidence 2 1355689999999995422 2222 2 57899999999986
No 173
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=86.13 Aligned_cols=87 Identities=13% Similarity=0.004 Sum_probs=58.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCC--ceeeeeE-EEEEECCeeEEEEEEeCCC-----------cccccccCcccccCCcee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIP--TVFDNYS-ANVMVDGKPINLGLWDTAG-----------QEDYDRLRPLSYPQTWSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~--t~~~~~~-~~i~~~~~~~~l~iwD~~G-----------~~~~~~~~~~~~~~a~~~ 66 (111)
|||||||+++++...+.....| ++...+. ..+.+++ ..+.||||+| ++.+......++++++++
T Consensus 39 g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (239)
T 3lxx_A 39 GAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHAL 116 (239)
T ss_dssp TSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEE
T ss_pred CCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEE
Confidence 7999999999999888666555 3333332 3444544 4689999999 445666667778899987
Q ss_pred eeehhhc--------------------CCccEEecccccchhh
Q psy13093 67 RSFALHA--------------------GHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 67 ~~~~~~~--------------------~~~~~~~~gnk~dl~~ 89 (111)
+.+.+.. ...++++++||+|+..
T Consensus 117 l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 117 LLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp EEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred EEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 7766511 1125899999999843
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.29 E-value=1.2e-12 Score=92.09 Aligned_cols=100 Identities=9% Similarity=-0.131 Sum_probs=68.6
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh--------
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH-------- 72 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~-------- 72 (111)
++|||||+.+++ ....|+...+. .+......+.||||+|+++|......+++.+|+++++++.
T Consensus 31 d~GKSTL~~~L~------~~giTi~~~~~---~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd~~g~~~qt~ 101 (370)
T 2elf_A 31 KSGRTSLAANLG------KKGTSSDITMY---NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLDAHTG 101 (370)
T ss_dssp TSSHHHHHHTTS------EEEEESSSEEE---EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEECTTCCCHHHH
T ss_pred CCCHHHHHHHHH------hCCEEEEeeEE---EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEcCCCCcHHHH
Confidence 689999999998 33344444432 2344456799999999999977777788999987777651
Q ss_pred --------cCCccEEeccc-ccchhhhhc-------hh--------ccCceEE--ccccc---ccCC
Q psy13093 73 --------AGHPVRFPRGR-KIRIMQMIG-------FR--------DRLLWGS--KQARE---EKNE 110 (111)
Q Consensus 73 --------~~~~~~~~~gn-k~dl~~~~~-------~~--------~~~~~~e--~SAk~---~~n~ 110 (111)
..-+..+++.| |+|+ .... .. ..+++++ +||++ |.|+
T Consensus 102 e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 102 ECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp HHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred HHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 11122377777 9998 3211 11 1367899 99999 8774
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.29 E-value=7.6e-12 Score=87.80 Aligned_cols=106 Identities=15% Similarity=-0.013 Sum_probs=65.4
Q ss_pred CcchHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCeeEEEEEEeCCCc---------ccccccCcccccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPINLGLWDTAGQ---------EDYDRLRPLSYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~--~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~---------~~~~~~~~~~~~~a~~~~~~ 69 (111)
|||||||++++....+... ..+|. +.....+.+++ ..+.+|||+|. +.|+.++. .++.+|.++.+
T Consensus 189 naGKSTLln~L~~~~~~~~~~~~~T~-d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~V 264 (364)
T 2qtf_A 189 NSGKTSLFNSLTGLTQKVDTKLFTTM-SPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILV 264 (364)
T ss_dssp TSSHHHHHHHHHCC-----------C-CSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEE
T ss_pred CCCHHHHHHHHHCCCccccCCccccc-CCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEE
Confidence 7999999999998776322 22222 22245667777 45789999997 23444433 46788876655
Q ss_pred hhh----------------------cCCccEEecccccchhhhh-------------ch-hccCceEEcccccccCC
Q psy13093 70 ALH----------------------AGHPVRFPRGRKIRIMQMI-------------GF-RDRLLWGSKQAREEKNE 110 (111)
Q Consensus 70 ~~~----------------------~~~~~~~~~gnk~dl~~~~-------------~~-~~~~~~~e~SAk~~~n~ 110 (111)
.+. ..+.++++++||+|+.... .. ..+..++.+||++|.|.
T Consensus 265 vD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 265 IDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNL 341 (364)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSH
T ss_pred EECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCH
Confidence 441 1345689999999994311 11 11335789999999874
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.28 E-value=1.6e-12 Score=101.60 Aligned_cols=109 Identities=16% Similarity=-0.049 Sum_probs=70.0
Q ss_pred CcchHHHHHHHHhC-------CCCC-------CCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCCce
Q psy13093 1 AVGKTCLLISYTTN-------AFPG-------EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~-------~f~~-------~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~ 65 (111)
++|||||+.+++.. .|.. ...++.|..+. ..+.++.....+.||||+|+++|......+++.+|+
T Consensus 306 DvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~ 385 (1289)
T 3avx_A 306 DHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDG 385 (1289)
T ss_dssp TSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSE
T ss_pred CCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCE
Confidence 68999999999863 1111 11223343321 223345566889999999999998888889999999
Q ss_pred eeeehhhcC----------------Ccc-EEecccccchhhhhc-----------hh-------ccCceEEcccccccC
Q psy13093 66 LRSFALHAG----------------HPV-RFPRGRKIRIMQMIG-----------FR-------DRLLWGSKQAREEKN 109 (111)
Q Consensus 66 ~~~~~~~~~----------------~~~-~~~~gnk~dl~~~~~-----------~~-------~~~~~~e~SAk~~~n 109 (111)
++++++... +.+ +++++||+|+..... +. ++++++++||++|.|
T Consensus 386 aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~n 464 (1289)
T 3avx_A 386 AILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 464 (1289)
T ss_dssp EEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTT
T ss_pred EEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCC
Confidence 877766221 233 789999999952110 11 136799999999954
No 177
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.28 E-value=4.4e-13 Score=98.01 Aligned_cols=55 Identities=16% Similarity=-0.005 Sum_probs=45.1
Q ss_pred ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 34 ~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
+....+.+.||||+|+++|...+..+++.+|+++.+.+. ..+.++++++||+|+.
T Consensus 77 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 77 FPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp EEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred EEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 333467899999999999999999999999998777762 2345689999999984
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.28 E-value=2.7e-12 Score=89.61 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=51.6
Q ss_pred eEEEEEEeCCCcccc-------------cccCcccccCCceeeeehhh------------------cCCccEEecccccc
Q psy13093 38 PINLGLWDTAGQEDY-------------DRLRPLSYPQTWSLRSFALH------------------AGHPVRFPRGRKIR 86 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~-------------~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~~gnk~d 86 (111)
...+.+|||+|..++ ..+...|++++++++++.+. -...+.++++||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 346899999999887 56778899999976665531 12335899999999
Q ss_pred hhhh----hchhc------cCceEEcccccccC
Q psy13093 87 IMQM----IGFRD------RLLWGSKQAREEKN 109 (111)
Q Consensus 87 l~~~----~~~~~------~~~~~e~SAk~~~n 109 (111)
+... ....+ ++.|+++||+.+.+
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~ 247 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQAD 247 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHH
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHH
Confidence 9531 11111 67899999998754
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.27 E-value=2.5e-12 Score=96.21 Aligned_cols=88 Identities=13% Similarity=-0.125 Sum_probs=61.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCc----------------eeeeeE-EEEEECCeeEEEEEEeCCCcccccccCcccccCC
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPT----------------VFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t----------------~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a 63 (111)
|+|||||+.+++..........+ .+..+. ....+....+.++||||+|+++|...+..+++.+
T Consensus 19 gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~a 98 (665)
T 2dy1_A 19 GSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAA 98 (665)
T ss_dssp TSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhc
Confidence 79999999999854332111111 122221 3333444578999999999999999899999999
Q ss_pred ceeeeehh----------------hcCCccEEecccccchh
Q psy13093 64 WSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 64 ~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
|+.+++.+ ...+.+.++++||+|+.
T Consensus 99 d~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 99 DAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 98766665 22345688899999984
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.24 E-value=3.9e-12 Score=93.05 Aligned_cols=109 Identities=13% Similarity=-0.022 Sum_probs=67.9
Q ss_pred CcchHHHHHHHHhC--CCCC------------------CCCCceeeeeE-EEEEECCeeEEEEEEeCCCcccccccCccc
Q psy13093 1 AVGKTCLLISYTTN--AFPG------------------EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~~------------------~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~ 59 (111)
|+|||||+.+++.. .+.. ...++.|..+. ....++...+.+.||||+|+++|...+..+
T Consensus 23 ~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 102 (529)
T 2h5e_A 23 DAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT 102 (529)
T ss_dssp TSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHG
T ss_pred CChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHH
Confidence 69999999999863 1100 01112222221 122333456889999999999999888889
Q ss_pred ccCCceeeeehh----------------hcCCccEEecccccchhhhhc------hhc-------cCceEEcccccccC
Q psy13093 60 YPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIMQMIG------FRD-------RLLWGSKQAREEKN 109 (111)
Q Consensus 60 ~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~~~~~------~~~-------~~~~~e~SAk~~~n 109 (111)
++.+|+++.+++ ...+.++++++||+|+..... ..+ .+.|..+||+++.+
T Consensus 103 l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~G 181 (529)
T 2h5e_A 103 LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKG 181 (529)
T ss_dssp GGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEEEESCGGGCCE
T ss_pred HHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccceecceecccCcce
Confidence 999999877766 122445899999999953211 111 23355678877665
No 181
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.21 E-value=1.2e-11 Score=82.41 Aligned_cols=86 Identities=13% Similarity=-0.070 Sum_probs=51.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee---EEEEEECCeeEEEEEEeCCCc--------ccccccCccc----ccCCce
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPINLGLWDTAGQ--------EDYDRLRPLS----YPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~---~~~i~~~~~~~~l~iwD~~G~--------~~~~~~~~~~----~~~a~~ 65 (111)
|||||||+++++...+.....++.+... ...+..+ ...+.||||+|. +++......+ .+++|+
T Consensus 31 g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~ 108 (247)
T 3lxw_A 31 GAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHA 108 (247)
T ss_dssp TSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSE
T ss_pred CCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCE
Confidence 7999999999998776443333322221 1233333 467899999996 3332222222 389998
Q ss_pred eeeehh---------------------hcCCccEEecccccchh
Q psy13093 66 LRSFAL---------------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 66 ~~~~~~---------------------~~~~~~~~~~gnk~dl~ 88 (111)
++.+.+ ...+.++++++||+|+.
T Consensus 109 il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 109 LLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp EEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 766654 11245689999999994
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.20 E-value=6.6e-12 Score=80.89 Aligned_cols=107 Identities=11% Similarity=-0.059 Sum_probs=57.9
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCccc----------ccccCcccc---cCCcee
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQED----------YDRLRPLSY---PQTWSL 66 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~----------~~~~~~~~~---~~a~~~ 66 (111)
|||||||++++....|...+.|+.|..+. ..+.+++ .+.+||++|+.. ++.....++ +.++++
T Consensus 36 g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (210)
T 1pui_A 36 NAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGL 112 (210)
T ss_dssp TSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEE
Confidence 79999999999988766666788776643 3344433 578999999843 232233344 355654
Q ss_pred eeehh----------------hcCCccEEecccccchhh----hh--chhc--------cCceEEcccccccCC
Q psy13093 67 RSFAL----------------HAGHPVRFPRGRKIRIMQ----MI--GFRD--------RLLWGSKQAREEKNE 110 (111)
Q Consensus 67 ~~~~~----------------~~~~~~~~~~gnk~dl~~----~~--~~~~--------~~~~~e~SAk~~~n~ 110 (111)
+.+.+ .....+.++++||+|+.. .+ .... .+.++.+||+.+.|.
T Consensus 113 ~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 113 VVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred EEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 44433 112334678899999842 11 1111 245688999999874
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=2.9e-11 Score=86.25 Aligned_cols=110 Identities=16% Similarity=0.081 Sum_probs=54.8
Q ss_pred CcchHHHHHHHHhCCCCCCC--------CCceeeeeE-EEEEECCeeEEEEEEeCCCccccc-------c----------
Q psy13093 1 AVGKTCLLISYTTNAFPGEY--------IPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYD-------R---------- 54 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~--------~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~~~-------~---------- 54 (111)
|||||||+++++...+.... .+|++..+. ..+..++....+++||++|...+. .
T Consensus 41 GaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~ 120 (418)
T 2qag_C 41 GLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFE 120 (418)
T ss_dssp TSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHH
Confidence 89999999999987763221 234433221 111223445689999999987642 1
Q ss_pred --------cCcccccCCce--eeeehhh----------------cCCccEEecccccchhhh--hch----------hcc
Q psy13093 55 --------LRPLSYPQTWS--LRSFALH----------------AGHPVRFPRGRKIRIMQM--IGF----------RDR 96 (111)
Q Consensus 55 --------~~~~~~~~a~~--~~~~~~~----------------~~~~~~~~~gnk~dl~~~--~~~----------~~~ 96 (111)
+.+.+++++++ ++.+... ..+.++++++||+|+... +.. ..+
T Consensus 121 ~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~ 200 (418)
T 2qag_C 121 DYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK 200 (418)
T ss_dssp HHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcC
Confidence 34567777663 3233221 123458999999998421 111 117
Q ss_pred CceEEcccccccCC
Q psy13093 97 LLWGSKQAREEKNE 110 (111)
Q Consensus 97 ~~~~e~SAk~~~n~ 110 (111)
+.++++||+++.|+
T Consensus 201 i~~~~~sa~~~~~v 214 (418)
T 2qag_C 201 IKIYEFPETDDEEE 214 (418)
T ss_dssp CCCCCCC-------
T ss_pred CeEEeCCCCCCcCH
Confidence 88999999999886
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.19 E-value=3e-11 Score=81.28 Aligned_cols=86 Identities=13% Similarity=0.012 Sum_probs=56.1
Q ss_pred CcchHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcc---------cccCCceeeee
Q psy13093 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL---------SYPQTWSLRSF 69 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~--~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~---------~~~~a~~~~~~ 69 (111)
|||||||+++++...+. ..+.++.... ..+.++.....+.||||+|++++..+... +++.+|+++.+
T Consensus 49 g~GKSSLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v 126 (270)
T 1h65_A 49 GVGKSSTVNSIIGERVVSISPFQSEGPRP--VMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYV 126 (270)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCSSC--EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEE
T ss_pred CCCHHHHHHHHhCCCcccccCCCCcceee--EEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEE
Confidence 79999999999988762 2222222111 22334445678999999999888655442 23468877666
Q ss_pred hh-------------------hcCC---ccEEecccccchh
Q psy13093 70 AL-------------------HAGH---PVRFPRGRKIRIM 88 (111)
Q Consensus 70 ~~-------------------~~~~---~~~~~~gnk~dl~ 88 (111)
.+ .... .++++++||+|+.
T Consensus 127 ~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 127 DRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred EeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 32 1121 3689999999984
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.14 E-value=8e-12 Score=87.11 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=48.5
Q ss_pred eEEEEEEeCCCcc-------------cccccCcccccCCceeeeehh------------------hcCCccEEecccccc
Q psy13093 38 PINLGLWDTAGQE-------------DYDRLRPLSYPQTWSLRSFAL------------------HAGHPVRFPRGRKIR 86 (111)
Q Consensus 38 ~~~l~iwD~~G~~-------------~~~~~~~~~~~~a~~~~~~~~------------------~~~~~~~~~~gnk~d 86 (111)
...+.||||+|.. .+..+...|++.++.+++++. .-...+.++++||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 3679999999963 455677788887776555432 112345799999999
Q ss_pred hhhh----hchhc------cC---ceEEcccccccCCC
Q psy13093 87 IMQM----IGFRD------RL---LWGSKQAREEKNEK 111 (111)
Q Consensus 87 l~~~----~~~~~------~~---~~~e~SAk~~~n~~ 111 (111)
+... ....+ .. .++++||++|.|++
T Consensus 209 l~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~ 246 (353)
T 2x2e_A 209 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 246 (353)
T ss_dssp GSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTC
T ss_pred ccCcchhHHHHHhCCcccccCCceEEEeCCcccccccc
Confidence 9532 11111 12 34679999998853
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=1.7e-10 Score=81.75 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHhCCCC-CCC-----CCceeeeeEEE----------------EEECC-eeEEEEEEeCCCccc----cc
Q psy13093 1 AVGKTCLLISYTTNAFP-GEY-----IPTVFDNYSAN----------------VMVDG-KPINLGLWDTAGQED----YD 53 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~~~-----~~t~~~~~~~~----------------i~~~~-~~~~l~iwD~~G~~~----~~ 53 (111)
|||||||+++++..... .++ .|+.|..+... ..+++ +.+.+++|||+|+.+ .+
T Consensus 10 nvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~~~ 89 (397)
T 1wxq_A 10 NVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGR 89 (397)
T ss_dssp TSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC----------
T ss_pred CCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccchhhhh
Confidence 79999999999977632 222 24444322110 11233 257899999999864 33
Q ss_pred ccCc---ccccCCceeeeehhhc
Q psy13093 54 RLRP---LSYPQTWSLRSFALHA 73 (111)
Q Consensus 54 ~~~~---~~~~~a~~~~~~~~~~ 73 (111)
.+.. .+++++|+++.+++..
T Consensus 90 ~l~~~~l~~i~~aD~il~VvD~~ 112 (397)
T 1wxq_A 90 GLGNKFLDDLRMASALIHVVDAT 112 (397)
T ss_dssp -----CCCSSTTCSEEEEEEETT
T ss_pred hHHHHHHHHHhcCCEEEEEEecc
Confidence 3444 4578999877776643
No 187
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.11 E-value=6.2e-11 Score=90.70 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=45.3
Q ss_pred CCeeEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccchh
Q psy13093 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 35 ~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
++..+.++||||+|+.+|...+..+++.+|+++++++ ...+.+.++++||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 4558999999999999999999999999999877766 12344588999999996
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.09 E-value=7.2e-11 Score=80.57 Aligned_cols=71 Identities=14% Similarity=0.045 Sum_probs=47.7
Q ss_pred EEEEEEeCCCccc-------------ccccCcccccCCceeeeehhh------------------cCCccEEecccccch
Q psy13093 39 INLGLWDTAGQED-------------YDRLRPLSYPQTWSLRSFALH------------------AGHPVRFPRGRKIRI 87 (111)
Q Consensus 39 ~~l~iwD~~G~~~-------------~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~~gnk~dl 87 (111)
..+.+|||+|..+ +..++..+++.+|+++++.+. ..+.+.++++||+|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl 210 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCccc
Confidence 5799999999764 456677888999976555541 123457899999999
Q ss_pred hhhhc----hhc------cCceEEcccccccC
Q psy13093 88 MQMIG----FRD------RLLWGSKQAREEKN 109 (111)
Q Consensus 88 ~~~~~----~~~------~~~~~e~SAk~~~n 109 (111)
..... ..+ .+.|+++||+.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~ 242 (315)
T 1jwy_B 211 MDKGTDAMEVLTGRVIPLTLGFIGVINRSQED 242 (315)
T ss_dssp SCSSCCCHHHHTTSSSCCTTCEEECCCCCHHH
T ss_pred CCcchHHHHHHhCCCccCCCCeEEEecCChhh
Confidence 53211 111 26788888876554
No 189
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=2.8e-10 Score=79.85 Aligned_cols=89 Identities=19% Similarity=0.121 Sum_probs=53.0
Q ss_pred CcchHHHHHHHHhCCCCC-CCC-CceeeeeEEEEEECCe---------------eEEEEEEeCCCccccc----ccCcc-
Q psy13093 1 AVGKTCLLISYTTNAFPG-EYI-PTVFDNYSANVMVDGK---------------PINLGLWDTAGQEDYD----RLRPL- 58 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~~-~t~~~~~~~~i~~~~~---------------~~~l~iwD~~G~~~~~----~~~~~- 58 (111)
|||||||+++++...+.. +|. +|+..... .+.+++. +..+++||++|+.++. .+.+.
T Consensus 12 nvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~f 90 (363)
T 1jal_A 12 NVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKF 90 (363)
T ss_dssp TSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCH
T ss_pred CCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHH
Confidence 799999999999877532 221 24433321 2334443 2689999999998863 45554
Q ss_pred --cccCCceeeeehhhcCCccEEecccccchhhh
Q psy13093 59 --SYPQTWSLRSFALHAGHPVRFPRGRKIRIMQM 90 (111)
Q Consensus 59 --~~~~a~~~~~~~~~~~~~~~~~~gnk~dl~~~ 90 (111)
+++++|+++.+++...++.++.+.+++|..+.
T Consensus 91 l~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d 124 (363)
T 1jal_A 91 LANIRETDAIGHVVRCFENDDIVHVAGKIDPLDD 124 (363)
T ss_dssp HHHHHTCSEEEEEEECSCC---------CCHHHH
T ss_pred HHHHHhcCeEEEEEecCCCCceeeecCCcChHHH
Confidence 47899998888887777777788888887543
No 190
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.98 E-value=1.1e-10 Score=87.73 Aligned_cols=86 Identities=15% Similarity=-0.037 Sum_probs=58.0
Q ss_pred CcchHHHHHHHHh--CCCCC------------------CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccc
Q psy13093 1 AVGKTCLLISYTT--NAFPG------------------EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (111)
Q Consensus 1 gvGKssl~~~~~~--~~f~~------------------~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~ 60 (111)
|+|||||+.+++. +.+.. ...+|+..... . +....+.+.||||+|+.+|...+..++
T Consensus 22 ~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~-~--~~~~~~~i~liDTPG~~df~~~~~~~l 98 (691)
T 1dar_A 22 DAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT-T--CFWKDHRINIIDTPGHVDFTIEVERSM 98 (691)
T ss_dssp TSCHHHHHHHHHHHHCC----------------------------CCEE-E--EEETTEEEEEECCCSSTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceE-E--EEECCeEEEEEECcCccchHHHHHHHH
Confidence 6999999999984 22210 22344433321 2 222357899999999999999999999
Q ss_pred cCCceeeeehh----------------hcCCccEEecccccchhh
Q psy13093 61 PQTWSLRSFAL----------------HAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 61 ~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~~ 89 (111)
+.+|+++++++ ...+.+.++++||+|+..
T Consensus 99 ~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 99 RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG 143 (691)
T ss_dssp HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred HHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc
Confidence 99999877766 122456889999999953
No 191
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.97 E-value=7.1e-10 Score=83.51 Aligned_cols=87 Identities=16% Similarity=0.003 Sum_probs=60.4
Q ss_pred CcchHHHHHHHHhC--CCCC------------------CCCCceeeeeEEEEEE-----CCeeEEEEEEeCCCccccccc
Q psy13093 1 AVGKTCLLISYTTN--AFPG------------------EYIPTVFDNYSANVMV-----DGKPINLGLWDTAGQEDYDRL 55 (111)
Q Consensus 1 gvGKssl~~~~~~~--~f~~------------------~~~~t~~~~~~~~i~~-----~~~~~~l~iwD~~G~~~~~~~ 55 (111)
|+|||||+.+++.. .+.. +...|+...+. .+.. ++..+.++||||+|+.+|...
T Consensus 20 ~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~i~liDTPG~~df~~~ 98 (704)
T 2rdo_7 20 DAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT-TAFWSGMAKQYEPHRINIIDTPGHVDFTIE 98 (704)
T ss_pred CCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceE-EEEECCccccCCceeEEEEeCCCccchHHH
Confidence 69999999999753 2211 11223333221 1222 234589999999999999999
Q ss_pred CcccccCCceeeeehh----------------hcCCccEEecccccchh
Q psy13093 56 RPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 56 ~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
+..+++.+|+++++++ ...+.+.++++||+|+.
T Consensus 99 ~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 99 VERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred HHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 9999999999777765 12244588999999984
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.97 E-value=2.9e-10 Score=73.80 Aligned_cols=69 Identities=10% Similarity=-0.039 Sum_probs=41.2
Q ss_pred eEEEEEEeCCCcccccccCcccc-cCCceeeeehhh------------cCCccEEecccccchhhh--hchh--------
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSY-PQTWSLRSFALH------------AGHPVRFPRGRKIRIMQM--IGFR-------- 94 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~-~~a~~~~~~~~~------------~~~~~~~~~gnk~dl~~~--~~~~-------- 94 (111)
...+.+|||+|+-. .+.++ ..++..+.+.+. ....+.++++||+|+... ....
T Consensus 108 ~~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 183 (221)
T 2wsm_A 108 DCDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKL 183 (221)
T ss_dssp TCSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHH
Confidence 35788999999621 12222 234444444431 112347899999999532 1111
Q ss_pred --ccCceEEcccccccCC
Q psy13093 95 --DRLLWGSKQAREEKNE 110 (111)
Q Consensus 95 --~~~~~~e~SAk~~~n~ 110 (111)
..+.++++||++|.|+
T Consensus 184 ~~~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 184 INPRAKIIEMDLKTGKGF 201 (221)
T ss_dssp HCTTSEEEECBTTTTBTH
T ss_pred hCCCCeEEEeecCCCCCH
Confidence 1467899999999885
No 193
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.91 E-value=1.8e-09 Score=81.19 Aligned_cols=50 Identities=10% Similarity=-0.048 Sum_probs=36.8
Q ss_pred EEEEEEeCCCcccc---cccCcccccCCceeeeehh---------------hcC--CccEEecccccchh
Q psy13093 39 INLGLWDTAGQEDY---DRLRPLSYPQTWSLRSFAL---------------HAG--HPVRFPRGRKIRIM 88 (111)
Q Consensus 39 ~~l~iwD~~G~~~~---~~~~~~~~~~a~~~~~~~~---------------~~~--~~~~~~~gnk~dl~ 88 (111)
..+.||||+|.... ..++..|++++|+++.+.+ ... ..+++++.||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 35899999997653 4566788899998766664 111 33589999999984
No 194
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.90 E-value=6.3e-10 Score=83.68 Aligned_cols=86 Identities=13% Similarity=-0.040 Sum_probs=58.4
Q ss_pred CcchHHHHHHHHh--CCCCC------------------CCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccccCcccc
Q psy13093 1 AVGKTCLLISYTT--NAFPG------------------EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (111)
Q Consensus 1 gvGKssl~~~~~~--~~f~~------------------~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~~~~~~~ 60 (111)
|+|||||+.+++. +.+.. ....|+.... ..+.. ..+.+.||||+|+.+|...+..++
T Consensus 20 ~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~-~~~~~--~~~~i~liDTPG~~df~~~~~~~l 96 (693)
T 2xex_A 20 DAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAA-TTAAW--EGHRVNIIDTPGHVDFTVEVERSL 96 (693)
T ss_dssp GGTHHHHHHHHHHHHSSCC-------------------------CCSE-EEEEE--TTEEEEEECCCCCSSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeee-EEEEE--CCeeEEEEECcCCcchHHHHHHHH
Confidence 6899999999985 33311 0112222221 12222 357899999999999999899999
Q ss_pred cCCceeeeehhh----------------cCCccEEecccccchhh
Q psy13093 61 PQTWSLRSFALH----------------AGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 61 ~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~~ 89 (111)
+.+|+++++.+. ..+.+++++.||+|+..
T Consensus 97 ~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 97 RVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLG 141 (693)
T ss_dssp HHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred HHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 999988777661 22456889999999953
No 195
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.81 E-value=2.1e-09 Score=79.04 Aligned_cols=49 Identities=8% Similarity=-0.084 Sum_probs=37.0
Q ss_pred EEEEEeCCCccc-----------ccccCcccccCCceeeeehhhc-----------------CCccEEecccccchh
Q psy13093 40 NLGLWDTAGQED-----------YDRLRPLSYPQTWSLRSFALHA-----------------GHPVRFPRGRKIRIM 88 (111)
Q Consensus 40 ~l~iwD~~G~~~-----------~~~~~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~gnk~dl~ 88 (111)
.+.+|||+|... |..++..+++.+|+++.+.+.. ...+++++.||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 589999999875 4566677888999877776521 123589999999995
No 196
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.78 E-value=8.1e-09 Score=73.63 Aligned_cols=104 Identities=16% Similarity=-0.001 Sum_probs=62.4
Q ss_pred CcchHHHHHHHHhCCCC-C-----CCCCceeeeeEEEEEECCeeEEEEEEeCCCccc----ccccCccccc---CCceee
Q psy13093 1 AVGKTCLLISYTTNAFP-G-----EYIPTVFDNYSANVMVDGKPINLGLWDTAGQED----YDRLRPLSYP---QTWSLR 67 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~-~-----~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~----~~~~~~~~~~---~a~~~~ 67 (111)
|||||||+++++..... . ...|+++ .+.+++ ...+.+||++|..+ +..+...+++ .++.++
T Consensus 167 gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-----~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL 240 (416)
T 1udx_A 167 NAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-----VVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLL 240 (416)
T ss_dssp GGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-----EEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEE
T ss_pred CCcHHHHHHHHHcCCccccCcccceecceee-----EEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 69999999999876321 1 1223333 223333 35789999999743 3334333333 466654
Q ss_pred eehhh---------------------cCCccEEecccccchhhhh------chh--ccCceEEcccccccCC
Q psy13093 68 SFALH---------------------AGHPVRFPRGRKIRIMQMI------GFR--DRLLWGSKQAREEKNE 110 (111)
Q Consensus 68 ~~~~~---------------------~~~~~~~~~gnk~dl~~~~------~~~--~~~~~~e~SAk~~~n~ 110 (111)
.+.+. +...+.+++.||+|+.... ... .++.++.+||++++|+
T Consensus 241 ~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 241 YVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred EEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 44431 1234567777999995321 111 1568899999999875
No 197
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.72 E-value=6.4e-09 Score=73.69 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=39.0
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCe---------------eEEEEEEeCCCcccccc-------cCc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK---------------PINLGLWDTAGQEDYDR-------LRP 57 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~-~~~i~~~~~---------------~~~l~iwD~~G~~~~~~-------~~~ 57 (111)
|||||||++++....+.....|...... ...+.+++. ...+++||++|+.++.. .+.
T Consensus 32 nvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l 111 (396)
T 2ohf_A 32 NVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFL 111 (396)
T ss_dssp SSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHH
T ss_pred CCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHH
Confidence 7999999999998766333333222222 233444442 34699999999987654 345
Q ss_pred ccccCCceeeeehhhcCCccEE
Q psy13093 58 LSYPQTWSLRSFALHAGHPVRF 79 (111)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~ 79 (111)
.+++++|+++.+++...+..+.
T Consensus 112 ~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 112 SHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp HHHHTSSSEEEEEEC-------
T ss_pred HHHHhcCeEEEEEecCCCcchh
Confidence 6789999887777755544433
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.67 E-value=1.7e-08 Score=70.94 Aligned_cols=84 Identities=14% Similarity=0.068 Sum_probs=48.7
Q ss_pred CcchHHHHHHHHhCCC-CCC-----CCCceeeeeEEEEEECC-------------------eeEEEEEEeCCCccccc--
Q psy13093 1 AVGKTCLLISYTTNAF-PGE-----YIPTVFDNYSANVMVDG-------------------KPINLGLWDTAGQEDYD-- 53 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~-----~~~t~~~~~~~~i~~~~-------------------~~~~l~iwD~~G~~~~~-- 53 (111)
|||||||++++..... ..+ ..|++|.. .+++ ....+++||++|+.++.
T Consensus 11 nvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-----~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 85 (368)
T 2dby_A 11 NVGKSTLFNALTRANALAANYPFATIDKNVGVV-----PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK 85 (368)
T ss_dssp SSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-----ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred CCCHHHHHHHHhCCCCcccCCCCceeccceeeE-----ecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence 7999999999987542 222 23444432 2221 34689999999998763
Q ss_pred --ccCc---ccccCCceeeeehhhcCCccEEecccccchhh
Q psy13093 54 --RLRP---LSYPQTWSLRSFALHAGHPVRFPRGRKIRIMQ 89 (111)
Q Consensus 54 --~~~~---~~~~~a~~~~~~~~~~~~~~~~~~gnk~dl~~ 89 (111)
.+.+ .+++.+|+++.+++...+..++.+.+++|..+
T Consensus 86 ~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~ 126 (368)
T 2dby_A 86 GEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLE 126 (368)
T ss_dssp SSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HH
T ss_pred cchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHH
Confidence 2333 24789999888888777666777888888744
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.63 E-value=1.2e-08 Score=71.10 Aligned_cols=70 Identities=11% Similarity=-0.110 Sum_probs=45.0
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehhh------------cCCccEEecccccchhhhhch-------hc---
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH------------AGHPVRFPRGRKIRIMQMIGF-------RD--- 95 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~gnk~dl~~~~~~-------~~--- 95 (111)
.+.+.||||+|-.. ......+.+|.++.+.+. ..+.+.+++.||+|+...... ..
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~ 247 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIR 247 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHh
Confidence 47789999999432 112234778876666541 112357899999999532111 11
Q ss_pred ---------cCceEEcccccccCC
Q psy13093 96 ---------RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 ---------~~~~~e~SAk~~~n~ 110 (111)
+.+.+.+||++|.|+
T Consensus 248 ~~~~~~~~~~~~vi~iSA~~g~Gi 271 (355)
T 3p32_A 248 LIYPREALWRPPVLTMSAVEGRGL 271 (355)
T ss_dssp HHSTTCCSCCCCEEEEBGGGTBSH
T ss_pred hccccccCCCCceEEEEcCCCCCH
Confidence 356899999999885
No 200
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.54 E-value=3.5e-07 Score=62.57 Aligned_cols=63 Identities=8% Similarity=-0.181 Sum_probs=47.2
Q ss_pred CcccccccCcccccCCceeeeehhhc------------------CCccEEecccccchhhhh--c-h------hc--cCc
Q psy13093 48 GQEDYDRLRPLSYPQTWSLRSFALHA------------------GHPVRFPRGRKIRIMQMI--G-F------RD--RLL 98 (111)
Q Consensus 48 G~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~gnk~dl~~~~--~-~------~~--~~~ 98 (111)
.+++++.+.+.+++++|.++.+.+.. .+.+.++++||+|+.... . . .+ ++.
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~ 144 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD 144 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe
Confidence 48999999999999999876666521 234589999999994321 1 1 11 678
Q ss_pred eEEcccccccCC
Q psy13093 99 WGSKQAREEKNE 110 (111)
Q Consensus 99 ~~e~SAk~~~n~ 110 (111)
++++||++|.|+
T Consensus 145 ~~~~SA~~g~gi 156 (302)
T 2yv5_A 145 VLKVSAKTGEGI 156 (302)
T ss_dssp EEECCTTTCTTH
T ss_pred EEEEECCCCCCH
Confidence 899999999885
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.45 E-value=1.3e-07 Score=62.69 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=31.3
Q ss_pred EEEEEEeCCCcccccccCcc------cccCCceeeeehh---------------------hcCCccEEecccccchh
Q psy13093 39 INLGLWDTAGQEDYDRLRPL------SYPQTWSLRSFAL---------------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 39 ~~l~iwD~~G~~~~~~~~~~------~~~~a~~~~~~~~---------------------~~~~~~~~~~gnk~dl~ 88 (111)
+.+.||||+|+.++..+... .+.. +.++.+.+ ...+.+.+++.||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 57999999999876544321 3344 54444322 01134578999999994
No 202
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.36 E-value=7.6e-08 Score=63.04 Aligned_cols=66 Identities=5% Similarity=-0.240 Sum_probs=40.4
Q ss_pred eCCCcccccccCcccccCCceeeeehhhc------------------------CCccEEeccccc-chhhhhchhc----
Q psy13093 45 DTAGQEDYDRLRPLSYPQTWSLRSFALHA------------------------GHPVRFPRGRKI-RIMQMIGFRD---- 95 (111)
Q Consensus 45 D~~G~~~~~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~gnk~-dl~~~~~~~~---- 95 (111)
+.+||++++.+|+.||.++|++|.++|+. .+.+.++.+||. |+..+.+..+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 34699999999999999999998888721 223588888985 6743222222
Q ss_pred --------cCceEEcccccccCC
Q psy13093 96 --------RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 --------~~~~~e~SAk~~~n~ 110 (111)
.+....|||++|++.
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL 210 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGF 210 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTH
T ss_pred cCCcCCCCCEEEEEeECCCCcCH
Confidence 334588999999874
No 203
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.22 E-value=7.5e-07 Score=63.11 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=53.6
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeee-EEEEEECCe---------------eEEEEEEeCCCccccc-------ccC
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNY-SANVMVDGK---------------PINLGLWDTAGQEDYD-------RLR 56 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~-~~~i~~~~~---------------~~~l~iwD~~G~~~~~-------~~~ 56 (111)
|||||||++.++.... .....|...... ...+.+++. ...+.+||++|..... ...
T Consensus 30 naGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~f 109 (392)
T 1ni3_A 30 NVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAF 109 (392)
T ss_dssp SSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHH
T ss_pred CCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHH
Confidence 7999999999998665 333333222221 223445542 1468999999965422 122
Q ss_pred cccccCCceeeeehhhcCCccEEecccccch
Q psy13093 57 PLSYPQTWSLRSFALHAGHPVRFPRGRKIRI 87 (111)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~gnk~dl 87 (111)
..+++.+|+++.+.+...+..++.+.+++|-
T Consensus 110 l~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP 140 (392)
T 1ni3_A 110 LSHVRAVDAIYQVVRAFDDAEIIHVEGDVDP 140 (392)
T ss_dssp HHHHTTCSEEEEEEECCCTTCSSCCSSSSCH
T ss_pred HHHHHHHHHHHHHHhccccceeeeeccccCc
Confidence 3456889988777776665556666666664
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.14 E-value=2.9e-07 Score=63.91 Aligned_cols=70 Identities=10% Similarity=-0.035 Sum_probs=45.0
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehhhcC------------CccEEecccccchhhhhc-------hhc---
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAG------------HPVRFPRGRKIRIMQMIG-------FRD--- 95 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~gnk~dl~~~~~-------~~~--- 95 (111)
.+.+.||||+|...+... ..+.+|+++.+.+... +.+.+++.||+|+..... ..+
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~ 224 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALH 224 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHH
Confidence 467999999996544322 3578887666554210 224688999999954211 111
Q ss_pred ---------cCceEEcccccccCC
Q psy13093 96 ---------RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 ---------~~~~~e~SAk~~~n~ 110 (111)
....+.+||++|.|.
T Consensus 225 ~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 225 ILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp HSCCSBTTBCCEEEECBGGGTBSH
T ss_pred hccccccCCCCcEEEeeCCCCCCH
Confidence 235689999999875
No 205
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.09 E-value=5.8e-07 Score=61.44 Aligned_cols=65 Identities=5% Similarity=-0.249 Sum_probs=45.6
Q ss_pred CCCcccccccCcccccCCceeeeehhhc------------------------CCccEEecccc-cchhhhhchhc-----
Q psy13093 46 TAGQEDYDRLRPLSYPQTWSLRSFALHA------------------------GHPVRFPRGRK-IRIMQMIGFRD----- 95 (111)
Q Consensus 46 ~~G~~~~~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~gnk-~dl~~~~~~~~----- 95 (111)
.+||++++.+|+.||.++|++|.++|+. .+.++++.+|| .|+..+.+..+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L 273 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 273 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHc
Confidence 5899999999999999999998888732 23457788886 57754332222
Q ss_pred -------cCceEEcccccccCC
Q psy13093 96 -------RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 -------~~~~~e~SAk~~~n~ 110 (111)
......|||.+|++.
T Consensus 274 ~L~~l~r~W~Iq~csA~tGeGL 295 (312)
T 3l2o_B 274 HLNLLNHPWLVQDTEAETLTGF 295 (312)
T ss_dssp TGGGGCSCEEEEEEETTTCTTH
T ss_pred CCccCCCcEEEEecccCCCcCH
Confidence 333488999999874
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.06 E-value=1.8e-07 Score=65.13 Aligned_cols=70 Identities=10% Similarity=-0.120 Sum_probs=41.2
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehhhc------------CCccEEecccccchhhhhc-------hhc---
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHA------------GHPVRFPRGRKIRIMQMIG-------FRD--- 95 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~gnk~dl~~~~~-------~~~--- 95 (111)
.+.+.++||+|-... .......+|.++.+.+.. -..+.+++.||+|+..... +..
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~ 242 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALK 242 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHH
Confidence 456789999995311 123356778655554311 1224577889999953211 110
Q ss_pred ---------cCceEEcccccccCC
Q psy13093 96 ---------RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 ---------~~~~~e~SAk~~~n~ 110 (111)
..+.+.+||++|.+.
T Consensus 243 ~~~~~a~~~~~~vi~iSA~~g~Gi 266 (349)
T 2www_A 243 LLRKRSQVWKPKVIRISARSGEGI 266 (349)
T ss_dssp TCC-----CCCEEEECCTTTCTTH
T ss_pred hcCccccCCCceEEEEecCCCCCH
Confidence 235688999999874
No 207
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.73 E-value=1.4e-05 Score=58.77 Aligned_cols=54 Identities=13% Similarity=-0.034 Sum_probs=42.8
Q ss_pred CCeeEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccchh
Q psy13093 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 35 ~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
..+.+.++|.||+|+.+|..=....++-+|+.+++++ ...+.+.+++.||+|..
T Consensus 96 ~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE 165 (548)
T ss_dssp EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC
T ss_pred EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch
Confidence 3456789999999999998777777888998777776 33455689999999983
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.60 E-value=0.00012 Score=55.93 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=41.6
Q ss_pred EEEEEeCCCccc-------------ccccCcccc-cCCceeeeehhh-----------------cCCccEEecccccchh
Q psy13093 40 NLGLWDTAGQED-------------YDRLRPLSY-PQTWSLRSFALH-----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 40 ~l~iwD~~G~~~-------------~~~~~~~~~-~~a~~~~~~~~~-----------------~~~~~~~~~gnk~dl~ 88 (111)
.+.++||+|-.. ...+...|+ ..+|.++.+.+. -.+.+.+++.||+|+.
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv 230 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM 230 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSS
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccC
Confidence 477899999433 223344455 356655555431 1134689999999995
Q ss_pred hhhc----hhc------cCce---EEcccccccCC
Q psy13093 89 QMIG----FRD------RLLW---GSKQAREEKNE 110 (111)
Q Consensus 89 ~~~~----~~~------~~~~---~e~SAk~~~n~ 110 (111)
.... ... .+.| ..+||++|.|+
T Consensus 231 ~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gv 265 (772)
T 3zvr_A 231 DEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 265 (772)
T ss_dssp CTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSS
T ss_pred CcchhhHHHHHHHhhhhhccCCceEEecccccccc
Confidence 3211 111 1234 45799999886
No 209
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.54 E-value=3e-05 Score=52.02 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=26.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCccc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQED 51 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~ 51 (111)
|||||||++++...... ...++.|.... ..+.++ ..+++|||+|...
T Consensus 109 ~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 109 NTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp TSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred CCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 79999999999976653 23344444322 222222 2578999999764
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.45 E-value=2.3e-05 Score=54.94 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=45.9
Q ss_pred CCcccccccCcccccCCceeeeehh--------------hcCCccEEecccccchhhhh-------ch----hc--cC--
Q psy13093 47 AGQEDYDRLRPLSYPQTWSLRSFAL--------------HAGHPVRFPRGRKIRIMQMI-------GF----RD--RL-- 97 (111)
Q Consensus 47 ~G~~~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~gnk~dl~~~~-------~~----~~--~~-- 97 (111)
..+++|+.+++.+++.+++++.+.+ ...+.++++++||+|+.... .. .. ++
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKP 133 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCc
Confidence 4578999999999999987766665 23456689999999994211 11 11 44
Q ss_pred -ceEEcccccccCC
Q psy13093 98 -LWGSKQAREEKNE 110 (111)
Q Consensus 98 -~~~e~SAk~~~n~ 110 (111)
.++++||++|+|+
T Consensus 134 ~~v~~iSA~~g~gi 147 (368)
T 3h2y_A 134 EDVFLISAAKGQGI 147 (368)
T ss_dssp SEEEECCTTTCTTH
T ss_pred ccEEEEeCCCCcCH
Confidence 6899999999885
No 211
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00023 Score=50.16 Aligned_cols=69 Identities=20% Similarity=0.126 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCeeEEEEEEeCCCcccccc----cCc---ccccCCceeeeehh
Q psy13093 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR----LRP---LSYPQTWSLRSFAL 71 (111)
Q Consensus 1 gvGKssl~~~~~~~~f-~~~~~~t~~~~~~~~i~~~~~~~~l~iwD~~G~~~~~~----~~~---~~~~~a~~~~~~~~ 71 (111)
+||||||++.++..+- ..+|.-|.-......+.+++ ..+++.|++|--+-.. +-+ ...+.||.++.+.+
T Consensus 82 NvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD 158 (376)
T 4a9a_A 82 SVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILD 158 (376)
T ss_dssp CHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccc
Confidence 6999999999987542 22333232222223444554 4578999999643211 111 23567887666655
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.26 E-value=0.00011 Score=55.55 Aligned_cols=51 Identities=14% Similarity=-0.044 Sum_probs=40.5
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehh----------------hcCCccEEecccccchh
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFAL----------------HAGHPVRFPRGRKIRIM 88 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~~~~~gnk~dl~ 88 (111)
.+.++|.||+|+-+|..=....++-+|+.+++.+ ...+-+.+++-||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence 6889999999999998777777778898777776 22234588999999983
No 213
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.17 E-value=2e-05 Score=58.85 Aligned_cols=55 Identities=13% Similarity=-0.122 Sum_probs=41.7
Q ss_pred ECCeeEEEEEEeCCCcccccccCcccccCCceeeeehhh----------------cCCccEEecccccchh
Q psy13093 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH----------------AGHPVRFPRGRKIRIM 88 (111)
Q Consensus 34 ~~~~~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~gnk~dl~ 88 (111)
+..+.+.++|.||+|+.+|..-....++-+|+.+++.+. ..+-+.+++.||+|..
T Consensus 62 ~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 62 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp CBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 344567889999999999987777788889987777662 1233467889999973
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.07 E-value=8.2e-05 Score=52.14 Aligned_cols=67 Identities=9% Similarity=-0.053 Sum_probs=44.6
Q ss_pred EeCCCcccccccCcccccCCceeeeehh--------------hcCCccEEecccccchhhh-------hch----hc--c
Q psy13093 44 WDTAGQEDYDRLRPLSYPQTWSLRSFAL--------------HAGHPVRFPRGRKIRIMQM-------IGF----RD--R 96 (111)
Q Consensus 44 wD~~G~~~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~gnk~dl~~~-------~~~----~~--~ 96 (111)
+....|++|+++.+.+++.++.++.+.+ ...+.++++++||+|+... ... .. +
T Consensus 53 ~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g 132 (369)
T 3ec1_A 53 DVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG 132 (369)
T ss_dssp ------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC
Confidence 4445689999999999998987766665 2335568999999999421 111 11 3
Q ss_pred C---ceEEcccccccCC
Q psy13093 97 L---LWGSKQAREEKNE 110 (111)
Q Consensus 97 ~---~~~e~SAk~~~n~ 110 (111)
. ..+.+||++|+|.
T Consensus 133 ~~~~~v~~iSA~~g~gi 149 (369)
T 3ec1_A 133 LCPVDVCLVSAAKGIGM 149 (369)
T ss_dssp CCCSEEEECBTTTTBTH
T ss_pred CCcccEEEEECCCCCCH
Confidence 3 5689999999885
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.88 E-value=0.00076 Score=45.58 Aligned_cols=46 Identities=26% Similarity=0.158 Sum_probs=24.4
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCcc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQE 50 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~ 50 (111)
|||||||++++...... ...++.|.... ..+.++. .+.+|||+|--
T Consensus 130 nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 130 NVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp TSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 79999999999976521 11122222111 1122222 57899999964
No 216
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.07 E-value=0.0052 Score=45.71 Aligned_cols=51 Identities=22% Similarity=-0.041 Sum_probs=29.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCC-----ceeeeeEEEEEE-CCeeEEEEEEeCCCcccc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIP-----TVFDNYSANVMV-DGKPINLGLWDTAGQEDY 52 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~-----t~~~~~~~~i~~-~~~~~~l~iwD~~G~~~~ 52 (111)
|||||||++++.+....-.... |.|.... ...+ ......+.++||+|-...
T Consensus 48 nvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~-~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 48 RTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW-CVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp TSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE-EEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe-ecccccCCCceEEEecCCCcCcc
Confidence 7999999999997653112222 2222111 0111 123457889999997643
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.59 E-value=0.01 Score=41.51 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||||++.+...
T Consensus 172 nvGKStliN~L~~~ 185 (369)
T 3ec1_A 172 NVGKSTFINRIIEE 185 (369)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhh
Confidence 79999999999865
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.51 E-value=0.006 Score=41.17 Aligned_cols=54 Identities=6% Similarity=-0.229 Sum_probs=35.0
Q ss_pred cccccCCceeeeehh--------------hcCCccEEecccccchhhh------hchh--ccCceEEcccccccCC
Q psy13093 57 PLSYPQTWSLRSFAL--------------HAGHPVRFPRGRKIRIMQM------IGFR--DRLLWGSKQAREEKNE 110 (111)
Q Consensus 57 ~~~~~~a~~~~~~~~--------------~~~~~~~~~~gnk~dl~~~------~~~~--~~~~~~e~SAk~~~n~ 110 (111)
...++.+|+++.+.+ ...+.+.+++.||+|+... ...- .+...+.+||++|.+.
T Consensus 18 ~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 18 TEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred HHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccH
Confidence 344556676555543 2245668999999999531 1111 1567889999998875
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.30 E-value=0.013 Score=41.03 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=26.2
Q ss_pred CcchHHHHHHHHhCCCCC-CCCCceee----eeE-EEEEECCeeEEEEEEeCCCcccc
Q psy13093 1 AVGKTCLLISYTTNAFPG-EYIPTVFD----NYS-ANVMVDGKPINLGLWDTAGQEDY 52 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~-~~~~t~~~----~~~-~~i~~~~~~~~l~iwD~~G~~~~ 52 (111)
|||||||++.+....... ...++++. ... ..+.++.. +.+.||+|-...
T Consensus 170 nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~ 224 (368)
T 3h2y_A 170 NVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINH 224 (368)
T ss_dssp TSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCT
T ss_pred CCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcH
Confidence 799999999998752111 11111111 111 12222322 789999996543
No 220
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.15 E-value=0.00025 Score=51.07 Aligned_cols=64 Identities=14% Similarity=-0.066 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCeeEEEEEEeCCCccc--ccccC--------cccccCCce
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQED--YDRLR--------PLSYPQTWS 65 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~t~~~~~~-~~i~~~~~~~~l~iwD~~G~~~--~~~~~--------~~~~~~a~~ 65 (111)
|+||||+..++...-+ ....++.+.+.. ......+......+||..|++. .+..+ ..++..+.+
T Consensus 49 GsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G 123 (469)
T 1bif_A 49 ARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGG 123 (469)
T ss_dssp TSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999886432 123455443321 0000112234557899999843 34443 556655555
No 221
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.83 E-value=0.11 Score=32.27 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 15 GsGKSTL~~~L~~ 27 (180)
T 1kgd_A 15 GVGRRHIKNTLIT 27 (180)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999875
No 222
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=90.73 E-value=0.37 Score=34.68 Aligned_cols=51 Identities=25% Similarity=0.145 Sum_probs=30.1
Q ss_pred CcchHHHHHHHHhC------------------CCCC---CCCCceeeeeE-EE--EEE-CCeeEEEEEEeCCCccc
Q psy13093 1 AVGKTCLLISYTTN------------------AFPG---EYIPTVFDNYS-AN--VMV-DGKPINLGLWDTAGQED 51 (111)
Q Consensus 1 gvGKssl~~~~~~~------------------~f~~---~~~~t~~~~~~-~~--i~~-~~~~~~l~iwD~~G~~~ 51 (111)
++|||+|++++... .|.. .-..|.|.-.. .. +.. ++....+.+.||.|...
T Consensus 77 ~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~ 152 (447)
T 3q5d_A 77 RKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD 152 (447)
T ss_dssp TSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCS
T ss_pred CCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCcccc
Confidence 58999999999852 3321 11223344322 11 111 35568899999999643
No 223
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.28 E-value=0.13 Score=31.13 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 11 GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 11 CCFKSTVAAKLSK 23 (173)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999874
No 224
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.76 E-value=0.15 Score=31.87 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+..+..-
T Consensus 17 GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 17 GAGKTSLVRALVKA 30 (205)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999998763
No 225
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.60 E-value=0.15 Score=31.67 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 11 GaGKsTl~~~L~~ 23 (186)
T 3a00_A 11 GTGKSTLLKKLFA 23 (186)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999874
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.39 E-value=0.16 Score=31.35 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+...
T Consensus 19 GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 19 GSGKSTIAEALANL 32 (191)
T ss_dssp TSCHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999998764
No 227
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.17 E-value=0.17 Score=31.53 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 10 GsGKTTLl~~l~g 22 (178)
T 1ye8_A 10 GVGKTTLVKKIVE 22 (178)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988764
No 228
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.06 E-value=0.88 Score=32.57 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=25.2
Q ss_pred CcchHHHHHHHHhCCCCCCCCC--ceeeeeE-EEEEEC--CeeEEEEEEeCCCcc
Q psy13093 1 AVGKTCLLISYTTNAFPGEYIP--TVFDNYS-ANVMVD--GKPINLGLWDTAGQE 50 (111)
Q Consensus 1 gvGKssl~~~~~~~~f~~~~~~--t~~~~~~-~~i~~~--~~~~~l~iwD~~G~~ 50 (111)
|+|||||++.+.+-.+...... +.+.... ..+..+ +-...+.++|+.|-.
T Consensus 52 GaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 52 GLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp TSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 8999999999887644221110 0111111 111122 223478999987653
No 229
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.92 E-value=0.18 Score=31.76 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++.+..
T Consensus 14 GaGKSTLl~~L~~ 26 (198)
T 1lvg_A 14 GAGKSTLLKKLFQ 26 (198)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999998864
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.84 E-value=0.19 Score=31.38 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.++..
T Consensus 16 GsGKTTl~~~l~~ 28 (174)
T 1np6_A 16 GTGKTTLLKKLIP 28 (174)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 231
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.62 E-value=0.2 Score=30.37 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 14 GsGKSTl~~~La~ 26 (173)
T 1kag_A 14 GAGKSTIGRQLAQ 26 (173)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 232
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.54 E-value=0.21 Score=30.50 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 13 GsGKST~a~~La~ 25 (178)
T 1qhx_A 13 SAGKSGIVRCLQS 25 (178)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999876
No 233
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.54 E-value=0.21 Score=30.40 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 12 GsGKST~a~~L~~ 24 (181)
T 1ly1_A 12 GSGKSTWAREFIA 24 (181)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999886
No 234
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.53 E-value=0.2 Score=31.35 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 28 GsGKSTla~~L~~ 40 (202)
T 3t61_A 28 GSGKSSVGEAIAE 40 (202)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998864
No 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.08 E-value=0.23 Score=30.85 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 10 GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 10 GAGKSTISAEISK 22 (205)
T ss_dssp TSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 8999999988875
No 236
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.08 E-value=0.23 Score=30.49 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 11 GsGKsT~~~~L~~ 23 (194)
T 1nks_A 11 GVGKSTVLAKVKE 23 (194)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.06 E-value=0.23 Score=31.30 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
||||||++.++..
T Consensus 22 GsGKsTl~~~L~~ 34 (204)
T 2qor_A 22 GVGKGTLIKKVLS 34 (204)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.04 E-value=0.23 Score=31.77 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|||||||+..+..
T Consensus 29 GaGKsTL~~~L~~ 41 (197)
T 3ney_A 29 GVGRSHIKNALLS 41 (197)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999885
No 239
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.98 E-value=0.24 Score=30.03 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 53 G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 53 GVGKTAIVEGLAQR 66 (195)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999888753
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.97 E-value=0.23 Score=31.48 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+...
T Consensus 18 GsGKsTl~~~L~~~ 31 (208)
T 3tau_A 18 GVGKGTVREAVFKD 31 (208)
T ss_dssp TSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999864
No 241
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.97 E-value=0.23 Score=32.08 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||+..+...
T Consensus 26 GsGKSTLlk~L~g~ 39 (219)
T 1s96_A 26 GAGKSSLIQALLKT 39 (219)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcc
Confidence 89999999998763
No 242
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.89 E-value=0.24 Score=31.20 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 16 GsGKSTl~~~l~~ 28 (211)
T 3asz_A 16 ASGKTTLAQALAR 28 (211)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999887764
No 243
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.87 E-value=0.22 Score=29.92 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=10.4
Q ss_pred CcchHHHHHHH
Q psy13093 1 AVGKTCLLISY 11 (111)
Q Consensus 1 gvGKssl~~~~ 11 (111)
|+||||++..+
T Consensus 11 GsGKsT~a~~L 21 (179)
T 3lw7_A 11 GSGKSEFAKLL 21 (179)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 89999999998
No 244
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.80 E-value=0.23 Score=33.13 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++.+.+-
T Consensus 12 GaGKSTLln~L~g~ 25 (270)
T 3sop_A 12 GLGKSTLVNTLFKS 25 (270)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998753
No 245
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.54 E-value=0.26 Score=30.49 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 10 GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 10 GSGKSTQIQLLAQ 22 (197)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.42 E-value=0.26 Score=30.70 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+...
T Consensus 16 GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 16 GVGKGTVRKRIFED 29 (207)
T ss_dssp TSCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999998764
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.32 E-value=0.26 Score=31.54 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 33 GsGKSTLl~~L~g 45 (218)
T 1z6g_A 33 GVGKGTLIKKLLN 45 (218)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999998876
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.32 E-value=0.27 Score=31.09 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++.+..
T Consensus 30 GsGKSTLl~~l~g 42 (207)
T 1znw_A 30 AVGKSTVVRCLRE 42 (207)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999998875
No 249
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.21 E-value=0.28 Score=30.10 Aligned_cols=13 Identities=23% Similarity=0.043 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 13 GsGKsT~~~~L~~ 25 (192)
T 1kht_A 13 GVGSTTSSQLAMD 25 (192)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999888764
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=87.16 E-value=0.26 Score=31.20 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=10.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 32 GsGKSTl~~~l~~ 44 (208)
T 3c8u_A 32 GSGKSTLSNPLAA 44 (208)
T ss_dssp TSCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999877653
No 251
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.07 E-value=0.28 Score=30.18 Aligned_cols=13 Identities=46% Similarity=0.473 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 15 GsGKST~~~~L~~ 27 (193)
T 2rhm_A 15 ATGKTTLSQALAT 27 (193)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998864
No 252
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.02 E-value=0.29 Score=30.73 Aligned_cols=13 Identities=23% Similarity=0.274 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 39 GsGKSTl~~~L~~ 51 (200)
T 4eun_A 39 GSGKTTIAHGVAD 51 (200)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 253
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.01 E-value=0.28 Score=30.08 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 48 G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 48 GVGKTHLAVATLK 60 (180)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999987764
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.93 E-value=0.22 Score=30.56 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=9.1
Q ss_pred CcchHHHHHH
Q psy13093 1 AVGKTCLLIS 10 (111)
Q Consensus 1 gvGKssl~~~ 10 (111)
|+|||||++.
T Consensus 19 GsGKSTl~~~ 28 (171)
T 4gp7_A 19 GSGKSTFAKK 28 (171)
T ss_dssp TSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8999999995
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=86.90 E-value=0.3 Score=29.94 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|+|||||+.-+...-
T Consensus 43 GaGKTTLlr~l~g~l 57 (158)
T 1htw_A 43 GAGKTTLTRGMLQGI 57 (158)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC
Confidence 799999998887643
No 256
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.76 E-value=0.21 Score=31.34 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 10 GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 10 GAGKRTLVEKLSG 22 (214)
T ss_dssp EEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988864
No 257
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.72 E-value=0.3 Score=30.15 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 12 GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 12 GVGKSTTCKRLAA 24 (189)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhc
Confidence 8999999999875
No 258
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.61 E-value=0.32 Score=30.37 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.++..
T Consensus 14 GsGKTTl~~~L~~ 26 (169)
T 1xjc_A 14 HSGKTTLMEKWVA 26 (169)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
No 259
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.44 E-value=0.3 Score=33.06 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=11.4
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|||||||++.+.
T Consensus 175 G~GKSTLln~l~ 186 (302)
T 2yv5_A 175 GVGKSSILSRLT 186 (302)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999999998
No 260
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.43 E-value=0.3 Score=31.27 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=10.9
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||||+..++
T Consensus 40 GsGKSTLl~~i~ 51 (251)
T 2ehv_A 40 GTGKTTFAAQFI 51 (251)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999999877
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.38 E-value=0.32 Score=30.75 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..++.
T Consensus 35 GsGKSTll~~l~g 47 (231)
T 4a74_A 35 GSGKTQLAHTLAV 47 (231)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999976
No 262
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.11 E-value=0.32 Score=32.62 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.++...
T Consensus 41 G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 41 RVGKSSLLRAFLNE 54 (350)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 79999999999864
No 263
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.04 E-value=0.34 Score=30.24 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 11 GsGKSTl~~~L~~ 23 (204)
T 2if2_A 11 GCGKSTVAQMFRE 23 (204)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 8999999999876
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.95 E-value=0.36 Score=29.39 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 18 GsGKSTl~~~l~~ 30 (175)
T 1knq_A 18 GSGKSAVASEVAH 30 (175)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988764
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.89 E-value=0.36 Score=29.63 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 15 GsGKst~a~~La~ 27 (185)
T 3trf_A 15 GAGKTSVGSQLAK 27 (185)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998864
No 266
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.84 E-value=0.36 Score=30.24 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 35 GsGKsTl~~~La~ 47 (199)
T 3vaa_A 35 GAGKTTLGKAFAR 47 (199)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998864
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=85.82 E-value=0.36 Score=30.50 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||||+.++...
T Consensus 11 G~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 11 GTGKSTLLKKLFAE 24 (186)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999998753
No 268
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.79 E-value=0.32 Score=34.00 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=12.9
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|||||||++.+....
T Consensus 225 G~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 225 GVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSSHHHHHHHHHCCS
T ss_pred CccHHHHHHHHhccc
Confidence 899999999998643
No 269
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.69 E-value=0.31 Score=29.46 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 53 G~GKT~la~~~~~~ 66 (187)
T 2p65_A 53 GVGKTAIVEGLAIK 66 (187)
T ss_dssp GGCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999888653
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.69 E-value=0.37 Score=29.53 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 14 GsGKST~~~~La~ 26 (186)
T 3cm0_A 14 GAGKGTQASRLAQ 26 (186)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998874
No 271
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.48 E-value=0.36 Score=30.41 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..++.
T Consensus 33 GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 33 GTGKTIFSLHFIA 45 (235)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999873
No 272
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.45 E-value=0.37 Score=31.26 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 35 GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 35 ASGKSTVCEKIME 47 (245)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998865
No 273
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.45 E-value=0.39 Score=29.50 Aligned_cols=13 Identities=23% Similarity=0.118 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 10 GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 10 GSGKTTQAKKLYE 22 (195)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 274
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.44 E-value=0.37 Score=30.26 Aligned_cols=13 Identities=38% Similarity=0.378 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 30 GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 30 ASGKTTLALQTGL 42 (220)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999986
No 275
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.36 E-value=0.37 Score=32.37 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 40 G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 40 RTGKSSIIKIGINE 53 (357)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999999753
No 276
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.26 E-value=0.4 Score=29.90 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 14 GsGKsT~~~~L~~ 26 (213)
T 2plr_A 14 GSGKSSQATLLKD 26 (213)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.19 E-value=0.4 Score=29.39 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+..++..
T Consensus 13 GsGKsT~a~~L~~ 25 (196)
T 1tev_A 13 GAGKGTQCARIVE 25 (196)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988764
No 278
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.01 E-value=0.41 Score=29.94 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 20 GsGKST~~~~L~~ 32 (212)
T 2wwf_A 20 RSGKSTQSKLLVE 32 (212)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.98 E-value=0.42 Score=29.96 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 35 GsGKSTl~~~La~ 47 (200)
T 3uie_A 35 GSGKSTLACALNQ 47 (200)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999887754
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.93 E-value=0.42 Score=29.71 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+...
T Consensus 14 GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 14 KSGKTTQCMNIMES 27 (204)
T ss_dssp TSSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998863
No 281
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.93 E-value=0.41 Score=29.96 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 12 GsGKST~~~~La~ 24 (206)
T 1jjv_A 12 GSGKTTIANLFTD 24 (206)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 282
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=84.81 E-value=0.42 Score=30.27 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 15 GsGKSTl~~~L~~ 27 (227)
T 1cke_A 15 GAGKGTLCKAMAE 27 (227)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 283
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=84.79 E-value=0.41 Score=31.03 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=11.1
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+||||++..+.
T Consensus 37 GsGKSTl~k~La 48 (246)
T 2bbw_A 37 GSGKGTVCQRIA 48 (246)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999999887
No 284
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.70 E-value=0.44 Score=28.76 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 12 GsGKsT~a~~La~ 24 (173)
T 1e6c_A 12 GCGMTTVGRELAR 24 (173)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 285
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.64 E-value=0.44 Score=29.86 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 55 G~GKT~l~~~~~~ 67 (250)
T 1njg_A 55 GVGKTSIARLLAK 67 (250)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 286
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.58 E-value=0.46 Score=28.61 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 10 GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 10 CSGKSTVGSLLSR 22 (168)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.44 E-value=0.45 Score=29.99 Aligned_cols=13 Identities=38% Similarity=0.504 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 11 G~GKTTll~~l~g 23 (189)
T 2i3b_A 11 GVGKTTLIHKASE 23 (189)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHh
Confidence 7999999887764
No 288
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.26 E-value=0.47 Score=29.71 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 19 GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 19 RAGKSTQSRKLVE 31 (215)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998874
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.23 E-value=0.48 Score=29.00 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 21 GsGKst~~~~l~~ 33 (180)
T 3iij_A 21 GVGKTTLGKELAS 33 (180)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998874
No 290
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.22 E-value=0.47 Score=29.90 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 10 GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 10 GAGKGTQAEQIIE 22 (216)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999864
No 291
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.18 E-value=0.48 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 17 GsGKSTva~~La~ 29 (168)
T 1zuh_A 17 GSGKSSLAQELGL 29 (168)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998865
No 292
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.07 E-value=0.49 Score=29.16 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 23 GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 23 GSGKTTIATRLAD 35 (186)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999888764
No 293
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=84.07 E-value=0.19 Score=34.31 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||||++.+...
T Consensus 183 G~GKSTLln~L~g~ 196 (307)
T 1t9h_A 183 GVGKSSLLNAISPE 196 (307)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHhccc
Confidence 79999999998754
No 294
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=84.06 E-value=0.46 Score=32.67 Aligned_cols=70 Identities=11% Similarity=-0.091 Sum_probs=38.1
Q ss_pred eEEEEEEeCCCcccccccCcccccCCceeeeehhh--------cC----CccEEecccccchhhh--------hchhc--
Q psy13093 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALH--------AG----HPVRFPRGRKIRIMQM--------IGFRD-- 95 (111)
Q Consensus 38 ~~~l~iwD~~G~~~~~~~~~~~~~~a~~~~~~~~~--------~~----~~~~~~~gnk~dl~~~--------~~~~~-- 95 (111)
.+.+.++||+|...-.. .....+|.++.+.+. .. ..+.+++.||+|+... .....
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~ 223 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAAL 223 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHH
Confidence 46789999999643211 123466755444321 10 1123555699996311 11111
Q ss_pred ----------cCceEEcccccccCC
Q psy13093 96 ----------RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 ----------~~~~~e~SAk~~~n~ 110 (111)
..+.+.+||++|.+.
T Consensus 224 ~l~~~~~~~~~~~vl~~Sal~g~gi 248 (337)
T 2qm8_A 224 HILTPPSATWTPPVVTISGLHGKGL 248 (337)
T ss_dssp TTBCCSBTTBCCCEEEEBTTTTBSH
T ss_pred HhccccccCCCCCEEEEeCCCCCCH
Confidence 234577999999874
No 295
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.05 E-value=0.49 Score=29.16 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 19 GsGKsT~~~~La~ 31 (196)
T 2c95_A 19 GSGKGTQCEKIVQ 31 (196)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988864
No 296
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.99 E-value=0.49 Score=29.31 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 48 G~GKT~l~~~l~~ 60 (226)
T 2chg_A 48 GTGKTATAIALAR 60 (226)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 297
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.87 E-value=0.5 Score=28.91 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 16 GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 16 GSGKGTQCANIVR 28 (194)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988864
No 298
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.79 E-value=0.5 Score=30.18 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 17 GsGKsT~a~~La~ 29 (227)
T 1zd8_A 17 GSGKGTVSSRITT 29 (227)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998874
No 299
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.73 E-value=0.43 Score=30.84 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 40 GsGKSTLl~~l~G 52 (224)
T 2pcj_A 40 GSGKSTLLYILGL 52 (224)
T ss_dssp TSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999887764
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.68 E-value=0.51 Score=29.12 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 22 GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 22 GSGKGTQCEKLVE 34 (199)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988865
No 301
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.63 E-value=0.51 Score=29.62 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 32 GsGKstl~~~l~~ 44 (201)
T 1rz3_A 32 RSGKTTLANQLSQ 44 (201)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988764
No 302
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.61 E-value=0.49 Score=30.15 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=12.5
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..++..
T Consensus 34 GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 34 RTGKTQICHTLAVT 47 (243)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 79999999999873
No 303
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=83.57 E-value=0.52 Score=29.11 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||+...+...
T Consensus 20 GsGKSTv~~~La~~ 33 (184)
T 1y63_A 20 GTGKTSMAEMIAAE 33 (184)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999988753
No 304
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.55 E-value=0.53 Score=28.80 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 15 GsGKST~~~~L~~ 27 (179)
T 2pez_A 15 GAGKTTVSMALEE 27 (179)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888865
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.55 E-value=0.53 Score=28.67 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 14 GsGKsTla~~La~ 26 (175)
T 1via_A 14 GSGKSTLARALAK 26 (175)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988764
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.53 E-value=0.51 Score=29.58 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 31 GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 31 NSGKTTLAKNLQK 43 (207)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 307
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=83.50 E-value=0.52 Score=29.72 Aligned_cols=13 Identities=15% Similarity=-0.020 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 10 GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 10 GAGKGTQGERIVE 22 (216)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999864
No 308
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=83.40 E-value=0.51 Score=30.88 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 34 GsGKSTLl~~l~G 46 (240)
T 2onk_A 34 GAGKSVFLELIAG 46 (240)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999998775
No 309
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.39 E-value=0.53 Score=29.74 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 62 G~GKT~la~~l~~ 74 (242)
T 3bos_A 62 KSGRTHLIHAACA 74 (242)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 310
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.32 E-value=0.44 Score=32.41 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++.+...
T Consensus 14 GaGKTTll~~l~~~ 27 (318)
T 1nij_A 14 GAGKTTLLRHILNE 27 (318)
T ss_dssp SSSCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999865
No 311
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.27 E-value=0.41 Score=32.26 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||||++.+...
T Consensus 179 G~GKSTll~~l~g~ 192 (301)
T 1u0l_A 179 GVGKSSLLNAINPG 192 (301)
T ss_dssp TSSHHHHHHHHSTT
T ss_pred CCcHHHHHHHhccc
Confidence 89999999998764
No 312
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.26 E-value=0.52 Score=30.07 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.+++.
T Consensus 33 GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 33 GTGKTIFSQQFLW 45 (247)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988864
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=83.19 E-value=0.3 Score=31.31 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=7.3
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+||||++..+.
T Consensus 37 GsGKSTl~~~L~ 48 (231)
T 3lnc_A 37 GCGKTTVANKLL 48 (231)
T ss_dssp C----CHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999999988
No 314
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.18 E-value=0.46 Score=30.95 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 41 GsGKSTLl~~l~G 53 (235)
T 3tif_A 41 GSGKSTMLNIIGC 53 (235)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhc
Confidence 8999999887764
No 315
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.01 E-value=0.54 Score=31.27 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 45 G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 45 GMGKSTFVRQQAL 57 (296)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=82.83 E-value=0.58 Score=29.19 Aligned_cols=13 Identities=15% Similarity=0.251 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 30 GsGKST~a~~La~ 42 (201)
T 2cdn_A 30 GAGKGTQAVKLAE 42 (201)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=82.82 E-value=0.38 Score=29.38 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=7.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 15 GsGKST~a~~La~ 27 (183)
T 2vli_A 15 GVGKTHTAHTLHE 27 (183)
T ss_dssp ----CHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999864
No 318
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.73 E-value=0.59 Score=29.12 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+..++..
T Consensus 25 GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 25 GAGKGTQCEKLVK 37 (203)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.73 E-value=0.57 Score=30.71 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||..++..
T Consensus 11 GSGKSTla~~La~ 23 (253)
T 2ze6_A 11 CSGKTDMAIQIAQ 23 (253)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHh
Confidence 7999999998864
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=82.71 E-value=0.57 Score=31.93 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 100 GsGKSTL~~~L~g 112 (312)
T 3aez_A 100 AVGKSTTARVLQA 112 (312)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHh
Confidence 8999999987764
No 321
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.64 E-value=0.56 Score=31.00 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..++.
T Consensus 40 GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 40 GAGKSMLALQLAA 52 (279)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999874
No 322
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.62 E-value=0.38 Score=30.94 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||++..+..-
T Consensus 30 GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 30 GSGKTTYLNHFEKY 43 (230)
T ss_dssp TSCHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999887753
No 323
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=82.58 E-value=0.6 Score=29.78 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=10.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 12 GsGKsTq~~~L~~ 24 (205)
T 4hlc_A 12 GSGKTTVINEVYH 24 (205)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999998877654
No 324
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=82.51 E-value=0.58 Score=30.70 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++-+..-
T Consensus 39 GsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 39 GAGKSTLGKILAGD 52 (250)
T ss_dssp TSSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999988763
No 325
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=82.34 E-value=0.56 Score=31.46 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 43 GsGKSTla~~L~~ 55 (287)
T 1gvn_B 43 GSGKTSLRSAIFE 55 (287)
T ss_dssp TSCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 326
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=82.29 E-value=0.35 Score=30.04 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=10.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 12 GsGKSTL~~~L~~ 24 (171)
T 2f1r_A 12 DSGKTTLITRMMP 24 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6899999887764
No 327
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=82.24 E-value=0.52 Score=30.71 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 41 GsGKSTLl~~l~G 53 (237)
T 2cbz_A 41 GCGKSSLLSALLA 53 (237)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988764
No 328
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.21 E-value=0.64 Score=28.47 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||++...+..
T Consensus 12 GsGKsT~a~~La~ 24 (184)
T 2iyv_A 12 GSGKSTIGRRLAK 24 (184)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988865
No 329
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.09 E-value=0.65 Score=28.75 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||+...+...
T Consensus 18 GsGKST~~~~La~~ 31 (203)
T 1uf9_A 18 GSGKSTVAALLRSW 31 (203)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHC
Confidence 79999999998864
No 330
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.02 E-value=0.51 Score=30.20 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 32 GsGKSTLl~~l~G 44 (208)
T 3b85_A 32 GSGKTYLAMAKAV 44 (208)
T ss_dssp TSSTTHHHHHHHH
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988775
No 331
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=82.01 E-value=0.62 Score=30.94 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++-+..-
T Consensus 56 GsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 56 GSGKSTLSATLAGR 69 (267)
T ss_dssp TSSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999988763
No 332
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.96 E-value=0.63 Score=30.81 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+++-+..
T Consensus 35 GsGKSTll~~l~g 47 (261)
T 2eyu_A 35 GSGKSTTIASMID 47 (261)
T ss_dssp TCSHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 8999999888764
No 333
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.93 E-value=0.54 Score=31.14 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 42 GsGKSTLlk~l~G 54 (262)
T 1b0u_A 42 GSGKSTFLRCINF 54 (262)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988764
No 334
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.92 E-value=0.55 Score=30.23 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 45 GsGKSTLlk~l~G 57 (214)
T 1sgw_A 45 GIGKTTLLKTIST 57 (214)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988764
No 335
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=81.87 E-value=0.66 Score=29.31 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 10 GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 10 VAGKGTQAQFIME 22 (214)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998865
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=81.87 E-value=0.66 Score=29.41 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+..++..
T Consensus 14 GsGKsT~a~~La~ 26 (220)
T 1aky_A 14 GAGKGTQAPNLQE 26 (220)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988865
No 337
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.80 E-value=0.64 Score=29.68 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.+++.
T Consensus 40 G~GKT~l~l~~~~ 52 (251)
T 2zts_A 40 GTGKTTFAAQFIY 52 (251)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999863
No 338
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.78 E-value=0.55 Score=30.95 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 43 GsGKSTLlk~l~G 55 (257)
T 1g6h_A 43 GSGKSTLINVITG 55 (257)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999988764
No 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.66 E-value=0.57 Score=30.35 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 44 GsGKSTLl~~l~G 56 (229)
T 2pze_A 44 GAGKTSLLMMIMG 56 (229)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999988764
No 340
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=81.63 E-value=0.65 Score=31.35 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 90 GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 90 AVGKSTTARVLQA 102 (308)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988765
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=81.56 E-value=0.68 Score=29.37 Aligned_cols=13 Identities=31% Similarity=0.095 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+..++..
T Consensus 15 GsGKsT~~~~La~ 27 (222)
T 1zak_A 15 ASGKGTQCELIKT 27 (222)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 342
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=81.48 E-value=0.58 Score=30.72 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 45 GsGKSTLl~~l~G 57 (247)
T 2ff7_A 45 GSGKSTLTKLIQR 57 (247)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988765
No 343
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.47 E-value=0.58 Score=30.53 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 42 GsGKSTLl~~l~G 54 (240)
T 1ji0_A 42 GAGKTTTLSAIAG 54 (240)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999888764
No 344
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=81.46 E-value=0.58 Score=30.83 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 36 GsGKSTLlk~l~G 48 (249)
T 2qi9_C 36 GAGKSTLLARMAG 48 (249)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhC
Confidence 8999999988764
No 345
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=81.35 E-value=0.59 Score=30.53 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 38 GsGKSTLl~~l~G 50 (243)
T 1mv5_A 38 GGGKSTIFSLLER 50 (243)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988764
No 346
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=81.34 E-value=0.64 Score=32.17 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
||||||++..+..
T Consensus 17 GaGKTT~~~~La~ 29 (334)
T 1p6x_A 17 GIGKSTTGRVMAS 29 (334)
T ss_dssp TSSHHHHHHHHHS
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 347
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=81.26 E-value=1.1 Score=31.81 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++.+.+-
T Consensus 79 GaGKSTLln~L~Gl 92 (413)
T 1tq4_A 79 GSGKSSFINTLRGI 92 (413)
T ss_dssp TSSHHHHHHHHHTC
T ss_pred CCcHHHHHHHHhCC
Confidence 89999999998863
No 348
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.16 E-value=0.72 Score=29.47 Aligned_cols=13 Identities=15% Similarity=-0.105 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 10 GsGKsT~a~~La~ 22 (223)
T 2xb4_A 10 GSGKGTQGNLVKD 22 (223)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998864
No 349
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=81.16 E-value=0.73 Score=29.14 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=10.1
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+||||.+..+.
T Consensus 10 GsGKsTq~~~L~ 21 (197)
T 3hjn_A 10 GSGKSTQIQLLA 21 (197)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999877765
No 350
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=81.12 E-value=1.5 Score=29.88 Aligned_cols=60 Identities=5% Similarity=-0.109 Sum_probs=36.8
Q ss_pred cccccCcccccCCceeeeehh------------------hcCCccEEecccccchhhhhc-------hhc-----cCceE
Q psy13093 51 DYDRLRPLSYPQTWSLRSFAL------------------HAGHPVRFPRGRKIRIMQMIG-------FRD-----RLLWG 100 (111)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~------------------~~~~~~~~~~gnk~dl~~~~~-------~~~-----~~~~~ 100 (111)
|-..+.+.-..++|.++.+.+ ...+.+.+++-||+||..... ... +...+
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 334455556778886655544 113445789999999953211 111 56678
Q ss_pred EcccccccCC
Q psy13093 101 SKQAREEKNE 110 (111)
Q Consensus 101 e~SAk~~~n~ 110 (111)
.+||++|.+.
T Consensus 155 ~~sa~~~~g~ 164 (307)
T 1t9h_A 155 LTSSKDQDSL 164 (307)
T ss_dssp ECCHHHHTTC
T ss_pred EEecCCCCCH
Confidence 8999888763
No 351
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.12 E-value=0.72 Score=29.74 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 12 g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 12 AVGKSTFVKLLTK 24 (241)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 352
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.87 E-value=0.71 Score=31.31 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 55 G~GKTtl~~~l~~ 67 (386)
T 2qby_A 55 GTGKTAVVKFVLS 67 (386)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 353
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=80.74 E-value=0.76 Score=29.02 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 14 GSGKST~~~~L~~ 26 (218)
T 1vht_A 14 GSGKSTVANAFAD 26 (218)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 354
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.71 E-value=0.63 Score=30.77 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 51 GsGKSTLlk~l~G 63 (256)
T 1vpl_A 51 GAGKTTTLRIIST 63 (256)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988764
No 355
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.71 E-value=0.63 Score=30.92 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 60 GsGKSTLlk~l~G 72 (263)
T 2olj_A 60 GSGKSTFLRCLNL 72 (263)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHHc
Confidence 8999999888764
No 356
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.66 E-value=0.74 Score=31.00 Aligned_cols=12 Identities=25% Similarity=0.229 Sum_probs=10.0
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||||+..+.
T Consensus 41 GsGKSTla~~L~ 52 (290)
T 1odf_A 41 GSGKSFTSIQIY 52 (290)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999987664
No 357
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.63 E-value=0.75 Score=30.16 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 14 GSGKSTla~~La~ 26 (260)
T 3a4m_A 14 GVGKSTFSKNLAK 26 (260)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998874
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.61 E-value=0.76 Score=29.86 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 39 GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 39 GSGKGTQSLNLKK 51 (243)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999874
No 359
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=80.46 E-value=0.65 Score=31.09 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 44 GsGKSTLl~~l~G 56 (275)
T 3gfo_A 44 GVGKSTLFQNFNG 56 (275)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc
Confidence 8999999988765
No 360
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=80.43 E-value=0.66 Score=30.70 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 56 GsGKSTLl~~l~G 68 (260)
T 2ghi_A 56 GSGKSTIAKLLYR 68 (260)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988775
No 361
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=80.33 E-value=0.78 Score=28.62 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=10.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++.+...
T Consensus 13 gsGKTT~ll~~~~ 25 (184)
T 2orw_A 13 YSGKTTELLSFVE 25 (184)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999876653
No 362
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.29 E-value=0.81 Score=28.44 Aligned_cols=13 Identities=46% Similarity=0.626 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 64 GtGKT~la~~i~~ 76 (202)
T 2w58_A 64 GVGKTYLLAAIAN 76 (202)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999887764
No 363
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=80.25 E-value=0.59 Score=28.16 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.-+..
T Consensus 46 G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 46 GAGKSHLLQAWVA 58 (149)
T ss_dssp TTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888775
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=80.24 E-value=0.78 Score=31.51 Aligned_cols=12 Identities=33% Similarity=0.277 Sum_probs=10.4
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+||||++..+.
T Consensus 102 GSGKSTl~~~L~ 113 (321)
T 3tqc_A 102 AVGKSTTSRVLK 113 (321)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999988775
No 365
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=80.20 E-value=0.64 Score=30.89 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 47 GsGKSTLl~~l~G 59 (266)
T 4g1u_C 47 GAGKSTLLRLLTG 59 (266)
T ss_dssp TSCHHHHHHHHTS
T ss_pred CCcHHHHHHHHhc
Confidence 8999999988775
No 366
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=80.11 E-value=0.68 Score=30.84 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 55 GsGKSTLlk~l~G 67 (271)
T 2ixe_A 55 GSGKSTVAALLQN 67 (271)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999988765
No 367
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.05 E-value=0.83 Score=28.80 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 35 GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 35 ASGKSTLAVELEH 47 (211)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999887753
No 368
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.00 E-value=0.69 Score=30.67 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 43 GsGKSTLl~~i~G 55 (266)
T 2yz2_A 43 GSGKSTLLQIVAG 55 (266)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhC
Confidence 8999999988764
No 369
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=79.97 E-value=0.84 Score=28.79 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+||||+...+...
T Consensus 22 GSGKSTva~~L~~~ 35 (192)
T 2grj_A 22 GTGKSTVCEILKNK 35 (192)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999988753
No 370
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.90 E-value=0.69 Score=30.97 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 57 GsGKSTLlk~l~G 69 (279)
T 2ihy_A 57 GAGKTTLLNILNA 69 (279)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhC
Confidence 8999999888764
No 371
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=79.74 E-value=0.7 Score=30.44 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 41 GsGKSTLl~~l~G 53 (253)
T 2nq2_C 41 GCGKSTLLDLLLG 53 (253)
T ss_dssp SSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999988775
No 372
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.34 E-value=0.89 Score=29.36 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 36 GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 36 GSGKTTVINEVYH 48 (229)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=79.34 E-value=0.85 Score=29.78 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=11.0
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+||||++..+.
T Consensus 37 GsGKSTl~k~La 48 (252)
T 4e22_A 37 GAGKGTLCKALA 48 (252)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999998887
No 374
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=79.16 E-value=0.86 Score=31.38 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 62 G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 62 GIGKTTLAKFTVK 74 (412)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 375
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.15 E-value=0.9 Score=29.38 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 59 G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 59 GVGKTHLARAVAGE 72 (254)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=79.09 E-value=0.82 Score=31.54 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 180 GsGKSTLlk~L~g 192 (365)
T 1lw7_A 180 SSGKSVLVNKLAA 192 (365)
T ss_dssp TSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998775
No 377
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=79.03 E-value=0.72 Score=31.88 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
||||||++..+..
T Consensus 14 GsGKTT~~~~La~ 26 (331)
T 1e2k_A 14 GMGKTTTTQLLVA 26 (331)
T ss_dssp TSSHHHHHHHHTC
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988764
No 378
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.91 E-value=0.94 Score=29.06 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 26 GsGKsT~a~~La~ 38 (233)
T 1ak2_A 26 GAGKGTQAPKLAK 38 (233)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988864
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=78.90 E-value=0.94 Score=28.70 Aligned_cols=13 Identities=15% Similarity=-0.033 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 15 GsGKsT~a~~La~ 27 (217)
T 3be4_A 15 GSGKGTQCEFIKK 27 (217)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988864
No 380
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=78.56 E-value=0.97 Score=27.57 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=10.0
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||||+.-+.
T Consensus 36 GsGKStll~ai~ 47 (182)
T 3kta_A 36 GSGKSNIGDAIL 47 (182)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999987764
No 381
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.41 E-value=0.96 Score=30.69 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.7
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
||||||++..+.
T Consensus 112 GsGKTTll~~La 123 (304)
T 1rj9_A 112 GVGKTTTIAKLG 123 (304)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 899999988876
No 382
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=78.38 E-value=0.83 Score=30.34 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-...
T Consensus 40 GsGKSTLlk~l~G 52 (263)
T 2pjz_A 40 GSGKTTLLRAISG 52 (263)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999988775
No 383
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.29 E-value=0.97 Score=30.78 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|++-+..
T Consensus 61 G~GKTTLa~~ia~ 73 (334)
T 1in4_A 61 GLGKTTLAHIIAS 73 (334)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999999988875
No 384
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.24 E-value=0.98 Score=29.95 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 12 GsGKST~a~~L~~ 24 (301)
T 1ltq_A 12 GSGKSTWAREFIA 24 (301)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999886
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=78.24 E-value=0.98 Score=30.58 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 110 GsGKTTll~~Lag 122 (302)
T 3b9q_A 110 GGGKTTSLGKLAH 122 (302)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999887764
No 386
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=77.89 E-value=0.93 Score=31.91 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
||||||++..+..
T Consensus 59 GsGKTT~~~~Lae 71 (376)
T 1of1_A 59 GMGKTTTTQLLVA 71 (376)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988874
No 387
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=77.89 E-value=1.1 Score=27.85 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 12 GsGKst~~~~la~ 24 (208)
T 3ake_A 12 ASGKSSVARRVAA 24 (208)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988865
No 388
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.74 E-value=1.1 Score=29.21 Aligned_cols=13 Identities=23% Similarity=0.301 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 32 GSGKST~a~~L~~ 44 (252)
T 1uj2_A 32 ASGKSSVCAKIVQ 44 (252)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998865
No 389
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.69 E-value=0.89 Score=30.67 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 74 GsGKSTLlk~l~G 86 (290)
T 2bbs_A 74 GAGKTSLLMMIMG 86 (290)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhc
Confidence 8999999888764
No 390
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.49 E-value=0.85 Score=29.76 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 42 GsGKSTla~~L~~ 54 (253)
T 2p5t_B 42 GAGKTTIHRIKQK 54 (253)
T ss_dssp GGTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998764
No 391
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.39 E-value=1.1 Score=30.61 Aligned_cols=14 Identities=29% Similarity=0.159 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 54 G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 54 GTGKTVTLRKLWEL 67 (389)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 392
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=77.21 E-value=5.9 Score=28.66 Aligned_cols=51 Identities=25% Similarity=0.151 Sum_probs=30.2
Q ss_pred CcchHHHHHHH---Hh---------------CCCCC---CCCCceeeeeE-EE--EEE-CCeeEEEEEEeCCCccc
Q psy13093 1 AVGKTCLLISY---TT---------------NAFPG---EYIPTVFDNYS-AN--VMV-DGKPINLGLWDTAGQED 51 (111)
Q Consensus 1 gvGKssl~~~~---~~---------------~~f~~---~~~~t~~~~~~-~~--i~~-~~~~~~l~iwD~~G~~~ 51 (111)
++|||.|++.+ .. ..|.. ...-|.|.-.. .. +.. ++..+.+.+.||-|...
T Consensus 77 ~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d 152 (457)
T 4ido_A 77 RKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD 152 (457)
T ss_dssp TSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTC
T ss_pred CCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCC
Confidence 58999999944 31 23322 12234455432 11 222 56778999999998654
No 393
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.16 E-value=1.1 Score=29.39 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 61 GtGKT~la~~la~~ 74 (285)
T 3h4m_A 61 GTGKTLLAKAVATE 74 (285)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 89999999998753
No 394
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=76.87 E-value=0.59 Score=30.62 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 34 GsGKST~~~~L~~ 46 (263)
T 1p5z_B 34 AAGKSTFVNILKQ 46 (263)
T ss_dssp TSSHHHHHTTTGG
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988764
No 395
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=76.86 E-value=1.1 Score=30.95 Aligned_cols=14 Identities=29% Similarity=0.238 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..++..
T Consensus 141 GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 141 GSGKTQLAHTLAVM 154 (349)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999854
No 396
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.86 E-value=1.1 Score=30.50 Aligned_cols=12 Identities=33% Similarity=0.318 Sum_probs=10.3
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||||+.-+.
T Consensus 136 GsGKSTLl~lL~ 147 (305)
T 2v9p_A 136 NTGKSMLCNSLI 147 (305)
T ss_dssp SSSHHHHHHHHH
T ss_pred CCcHHHHHHHHh
Confidence 799999987765
No 397
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=76.81 E-value=1.1 Score=30.71 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 139 GaGKTTll~~Lag 151 (328)
T 3e70_C 139 GSGKTTTIAKLAN 151 (328)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999888764
No 398
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=76.78 E-value=1.1 Score=30.35 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 54 G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 54 GTGKTAVARLVLR 66 (387)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 399
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=76.58 E-value=1.1 Score=30.30 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.++...
T Consensus 78 G~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 78 SMGKTAFALKQAKN 91 (315)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998743
No 400
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=76.54 E-value=0.84 Score=30.24 Aligned_cols=35 Identities=11% Similarity=-0.035 Sum_probs=23.8
Q ss_pred CccEEecccccchhhhh------chh--ccCceEEcccccccCC
Q psy13093 75 HPVRFPRGRKIRIMQMI------GFR--DRLLWGSKQAREEKNE 110 (111)
Q Consensus 75 ~~~~~~~gnk~dl~~~~------~~~--~~~~~~e~SAk~~~n~ 110 (111)
+.+.+++.||+|+.... ... .+.+. .+||++|.+.
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi 88 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRK 88 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHH
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCH
Confidence 55689999999995321 111 15566 8999998763
No 401
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=76.51 E-value=1.1 Score=31.12 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 51 GsGKSTLLr~iaG 63 (355)
T 1z47_A 51 GSGKTTILRLIAG 63 (355)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CCcHHHHHHHHhC
Confidence 8999999988775
No 402
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=76.46 E-value=1.2 Score=30.00 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 47 GtGKT~la~~i~~ 59 (324)
T 1l8q_A 47 GTGKTHLLQAAGN 59 (324)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999999988875
No 403
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=76.38 E-value=1.1 Score=32.58 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 157 GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 157 GCGKSVLAAEAVR 169 (591)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999874
No 404
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.26 E-value=1.2 Score=29.53 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.-+..
T Consensus 54 GtGKTtLakala~ 66 (274)
T 2x8a_A 54 GCGKTLLAKAVAN 66 (274)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999999998875
No 405
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=76.23 E-value=1.2 Score=31.14 Aligned_cols=13 Identities=38% Similarity=0.450 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 40 GsGKSTLLr~iaG 52 (359)
T 3fvq_A 40 GCGKTTLLRCLAG 52 (359)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CchHHHHHHHHhc
Confidence 8999999888775
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.16 E-value=1.2 Score=28.76 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 55 GtGKT~la~~la~ 67 (257)
T 1lv7_A 55 GTGKTLLAKAIAG 67 (257)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=76.13 E-value=1.2 Score=29.66 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 85 GSGKSTva~~La~ 97 (281)
T 2f6r_A 85 GSGKSSVAQRLKN 97 (281)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998873
No 408
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=75.72 E-value=1.2 Score=31.02 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 39 GsGKSTLLr~iaG 51 (362)
T 2it1_A 39 GSGKSTLLYTIAG 51 (362)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CchHHHHHHHHhc
Confidence 8999999888775
No 409
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=75.65 E-value=1.2 Score=30.97 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 39 GsGKSTLLr~iaG 51 (359)
T 2yyz_A 39 GCGKTTTLLMLAG 51 (359)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CchHHHHHHHHHC
Confidence 8999999888775
No 410
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=75.62 E-value=1.3 Score=30.69 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 81 GaGKTTLl~~I~g~ 94 (347)
T 2obl_A 81 GVGKSTLLGMICNG 94 (347)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999888865
No 411
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.61 E-value=1.3 Score=29.15 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 83 GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 83 GVGKTHLARAVAGE 96 (278)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHH
Confidence 89999999888753
No 412
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=75.50 E-value=1.3 Score=31.07 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 39 GsGKSTLLr~iaG 51 (372)
T 1g29_1 39 GCGKTTTLRMIAG 51 (372)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CcHHHHHHHHHHc
Confidence 8999999888775
No 413
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.35 E-value=1.3 Score=30.20 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 55 G~GKT~la~~l~~ 67 (384)
T 2qby_B 55 GTGKTFVSKYIFN 67 (384)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 414
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.33 E-value=1.3 Score=28.44 Aligned_cols=13 Identities=38% Similarity=0.388 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 49 GtGKT~la~~la~ 61 (262)
T 2qz4_A 49 GCGKTLLAKAVAT 61 (262)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 415
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=75.29 E-value=1.4 Score=28.69 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 54 GtGKT~la~~la~ 66 (268)
T 2r62_A 54 GTGKTLLAKAVAG 66 (268)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999999988875
No 416
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.26 E-value=1.3 Score=30.71 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 185 GsGKSTll~~l~~ 197 (361)
T 2gza_A 185 GSGKTTLMKALMQ 197 (361)
T ss_dssp SSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHh
Confidence 8999999998875
No 417
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.20 E-value=1.4 Score=27.77 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++.++...
T Consensus 9 ~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 9 RSGKSRHAEALIGD 22 (180)
T ss_dssp TSSHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHhc
Confidence 68999999999854
No 418
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.18 E-value=1.3 Score=30.73 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+++-+..
T Consensus 133 GSGKTTlL~~l~g 145 (356)
T 3jvv_A 133 GSGKSTTLAAMLD 145 (356)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999987764
No 419
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=75.14 E-value=1.3 Score=31.02 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 47 GsGKSTLLr~iaG 59 (372)
T 1v43_A 47 GCGKTTTLRMIAG 59 (372)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CChHHHHHHHHHc
Confidence 8999999888775
No 420
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=74.89 E-value=1.4 Score=28.19 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 16 gsGKsT~~~~l~~ 28 (213)
T 4edh_A 16 GAGKSTNRDYLAE 28 (213)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988754
No 421
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.53 E-value=1.4 Score=29.40 Aligned_cols=13 Identities=15% Similarity=-0.046 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+..
T Consensus 46 GtGKT~la~aiA~ 58 (293)
T 3t15_A 46 GQGKSFQCELVFR 58 (293)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988775
No 422
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=74.47 E-value=1.4 Score=29.66 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=10.2
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
||||||++..+.
T Consensus 115 GsGKTTl~~~LA 126 (296)
T 2px0_A 115 GAGKTTTLAKLA 126 (296)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999987765
No 423
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=74.43 E-value=1.1 Score=31.05 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 36 GsGKSTLLr~iaG 48 (348)
T 3d31_A 36 GAGKTLFLELIAG 48 (348)
T ss_dssp THHHHHHHHHHHT
T ss_pred CccHHHHHHHHHc
Confidence 7899999888775
No 424
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=74.42 E-value=1.4 Score=29.04 Aligned_cols=13 Identities=38% Similarity=0.324 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 64 GtGKT~la~~la~ 76 (297)
T 3b9p_A 64 GNGKTLLARAVAT 76 (297)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 425
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=74.42 E-value=1.4 Score=31.03 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 39 GsGKSTLLr~iaG 51 (381)
T 3rlf_A 39 GCGKSTLLRMIAG 51 (381)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CchHHHHHHHHHc
Confidence 7999999888775
No 426
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=74.15 E-value=1.4 Score=32.10 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+..+.+
T Consensus 162 GvGKTtLA~~v~~ 174 (549)
T 2a5y_B 162 GSGKSVIASQALS 174 (549)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999986
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=74.11 E-value=1.5 Score=28.87 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 58 GsGKSTl~~~La~ 70 (250)
T 3nwj_A 58 GSGKTTVGKIMAR 70 (250)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999888864
No 428
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.08 E-value=1.4 Score=31.13 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=11.0
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||+|+.+++
T Consensus 188 GsGKTTLl~~la 199 (400)
T 3lda_A 188 RTGKSQLCHTLA 199 (400)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCChHHHHHHHH
Confidence 799999999886
No 429
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=74.05 E-value=1.4 Score=30.79 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 64 GaGKSTLlr~i~G 76 (366)
T 3tui_C 64 GAGKSTLIRCVNL 76 (366)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CchHHHHHHHHhc
Confidence 8999999877764
No 430
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.00 E-value=1.4 Score=30.61 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 146 GsGKTTll~~l~~ 158 (372)
T 2ewv_A 146 GSGKSTTIASMID 158 (372)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 7999999988764
No 431
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=73.98 E-value=1.5 Score=28.88 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 60 GtGKT~la~~la~ 72 (310)
T 1ofh_A 60 GVGKTEIARRLAK 72 (310)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988875
No 432
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.64 E-value=1.4 Score=30.19 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++-+..-
T Consensus 181 GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 181 GSGKTTYIKSIMEF 194 (330)
T ss_dssp TSCHHHHHHHGGGG
T ss_pred CCCHHHHHHHHhCC
Confidence 79999999988753
No 433
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=73.60 E-value=0.73 Score=30.98 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=8.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 15 GSGKSTva~~L~~ 27 (290)
T 1a7j_A 15 GAGTSTVKHTFDQ 27 (290)
T ss_dssp ---CCTHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988865
No 434
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.60 E-value=1.5 Score=32.10 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 303 GSGKTTLl~~LAg 315 (503)
T 2yhs_A 303 GVGKTTTIGKLAR 315 (503)
T ss_dssp TSSHHHHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 8999999887753
No 435
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=73.53 E-value=1.6 Score=27.00 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=9.8
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|||||++..-+.
T Consensus 12 G~GKTt~a~~la 23 (206)
T 4dzz_A 12 GSGKTTAVINIA 23 (206)
T ss_dssp TSSHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 799999977664
No 436
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=73.46 E-value=1.6 Score=30.49 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 167 GsGKTTll~~Lag 179 (359)
T 2og2_A 167 GGGKTTSLGKLAH 179 (359)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHh
Confidence 8999999887754
No 437
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.45 E-value=1.6 Score=28.54 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 74 GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 74 HSGKTALAAKIAEE 87 (272)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 89999999988763
No 438
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=73.26 E-value=1.6 Score=28.90 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=9.9
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||+++..+.
T Consensus 77 GtGKT~la~~la 88 (309)
T 3syl_A 77 GTGKTTVALKMA 88 (309)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999997554
No 439
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=73.22 E-value=1.2 Score=30.83 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=10.5
Q ss_pred CcchHHHH-HHHHh
Q psy13093 1 AVGKTCLL-ISYTT 13 (111)
Q Consensus 1 gvGKssl~-~~~~~ 13 (111)
||||||++ ..+..
T Consensus 22 GaGKTT~~~~~L~~ 35 (341)
T 1osn_A 22 GIGKTTAAEEFLHH 35 (341)
T ss_dssp SSCTTHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999 66653
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=73.03 E-value=1.7 Score=26.07 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=9.6
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|+|||+|+.-+.
T Consensus 33 GsGKStil~Ai~ 44 (149)
T 1f2t_A 33 GSGKSSLLDAIL 44 (149)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999976653
No 441
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=72.99 E-value=1.1 Score=30.46 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||++-+..
T Consensus 90 GsGKSTLl~ll~g 102 (306)
T 3nh6_A 90 GAGKSTILRLLFR 102 (306)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHc
Confidence 7999999977663
No 442
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.89 E-value=1.3 Score=29.98 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 46 G~GKTtl~~~la~ 58 (354)
T 1sxj_E 46 GTGKKTRCMALLE 58 (354)
T ss_dssp TSSHHHHHHTHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988776
No 443
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.82 E-value=1.7 Score=28.51 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=9.8
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|||||+++....
T Consensus 16 GvGKTt~a~~la 27 (228)
T 2r8r_A 16 GVGKTYAMLQAA 27 (228)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 899999966664
No 444
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.63 E-value=1.6 Score=29.52 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 56 G~GKTtla~~la~~ 69 (340)
T 1sxj_C 56 GTGKTSTIVALARE 69 (340)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 445
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=72.55 E-value=1.8 Score=28.12 Aligned_cols=13 Identities=38% Similarity=0.314 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++.+++.
T Consensus 22 GsGKTT~ll~~~~ 34 (223)
T 2b8t_A 22 FAGKTAELIRRLH 34 (223)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 7999999887764
No 446
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=72.51 E-value=1.8 Score=28.12 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 31 g~GKst~~~~l~~ 43 (223)
T 3ld9_A 31 GSGKTTQSHLLAE 43 (223)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888764
No 447
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=72.26 E-value=1.3 Score=28.71 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=8.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 35 GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 35 GAGKTTHLQWFCD 47 (227)
T ss_dssp ---CHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888764
No 448
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.20 E-value=1.7 Score=29.19 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 68 G~GKT~la~~la~ 80 (353)
T 1sxj_D 68 GTGKTSTILALTK 80 (353)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988865
No 449
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=72.17 E-value=1.7 Score=31.06 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+......
T Consensus 167 GsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 167 GVGKSVLLGMMARY 180 (438)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcc
Confidence 89999998888764
No 450
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=72.01 E-value=1.8 Score=29.40 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 48 G~GKT~la~~la~ 60 (373)
T 1jr3_A 48 GVGKTSIARLLAK 60 (373)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 451
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=71.83 E-value=1.7 Score=30.58 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 57 GsGKSTLLr~iaG 69 (390)
T 3gd7_A 57 GSGKSTLLSAFLR 69 (390)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CChHHHHHHHHhC
Confidence 7999999877764
No 452
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=71.77 E-value=1.8 Score=29.43 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.0
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 80 GtGKT~la~~la~~ 93 (368)
T 3uk6_A 80 GTGKTAIAMGMAQA 93 (368)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=71.62 E-value=1.9 Score=27.64 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 13 gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 13 GAGKTTARNVVVE 25 (213)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888764
No 454
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=71.59 E-value=1.9 Score=27.80 Aligned_cols=13 Identities=23% Similarity=0.046 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 15 g~GKst~~~~l~~ 27 (216)
T 3tmk_A 15 RTGKTTQCNILYK 27 (216)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.04 E-value=1.8 Score=27.88 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 44 GsGKStLA~~La~~ 57 (205)
T 2qmh_A 44 GVGKSETALELVQR 57 (205)
T ss_dssp TTTTHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999999864
No 456
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=71.01 E-value=1.8 Score=31.44 Aligned_cols=11 Identities=36% Similarity=0.621 Sum_probs=10.2
Q ss_pred CcchHHHHHHH
Q psy13093 1 AVGKTCLLISY 11 (111)
Q Consensus 1 gvGKssl~~~~ 11 (111)
|+|||+|+..|
T Consensus 49 GsGKSTL~~~~ 59 (525)
T 1tf7_A 49 GTGKTLFSIQF 59 (525)
T ss_dssp TSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 89999999996
No 457
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=70.91 E-value=1.9 Score=30.65 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+++-++.
T Consensus 177 GSGKTTlL~allg 189 (418)
T 1p9r_A 177 GSGKSTTLYAGLQ 189 (418)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999998875
No 458
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.81 E-value=2 Score=29.22 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++..+..
T Consensus 114 GsGKTTl~~~LA~ 126 (306)
T 1vma_A 114 GTGKTTSCGKLAK 126 (306)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 8999999887753
No 459
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=70.78 E-value=1.1 Score=31.09 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-...
T Consensus 41 GsGKSTLLr~iaG 53 (353)
T 1oxx_K 41 GAGKTTFMRIIAG 53 (353)
T ss_dssp HHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhC
Confidence 7899999988775
No 460
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=70.64 E-value=1.9 Score=31.53 Aligned_cols=52 Identities=12% Similarity=-0.116 Sum_probs=28.8
Q ss_pred eeEEEEEEeCCCccccc-ccCccc-----ccCCceeeeehhhcCC-------------cc-EEecccccchh
Q psy13093 37 KPINLGLWDTAGQEDYD-RLRPLS-----YPQTWSLRSFALHAGH-------------PV-RFPRGRKIRIM 88 (111)
Q Consensus 37 ~~~~l~iwD~~G~~~~~-~~~~~~-----~~~a~~~~~~~~~~~~-------------~~-~~~~gnk~dl~ 88 (111)
..+.+.|+||+|..... .+.... ...++.++++.+.... .+ ..++.||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCccc
Confidence 34678999999976421 111100 1256665555542211 12 46778999984
No 461
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=70.62 E-value=2 Score=27.11 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=10.0
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|||||++..-+.
T Consensus 11 GvGKTT~a~~LA 22 (209)
T 3cwq_A 11 GVGKTTTAVHLS 22 (209)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 899999977765
No 462
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=70.42 E-value=2.1 Score=27.98 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 37 GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 37 GAGKSTAIQVVVE 49 (236)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988754
No 463
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=70.42 E-value=2 Score=30.96 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||||++-+.+-
T Consensus 148 GsGKSTLlr~L~Gl 161 (460)
T 2npi_A 148 QTGKTSLSRTLCSY 161 (460)
T ss_dssp TSSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhCc
Confidence 79999999887753
No 464
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=70.38 E-value=1.9 Score=29.74 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.+++.
T Consensus 71 GsGKTtLal~la~ 83 (349)
T 2zr9_A 71 SSGKTTVALHAVA 83 (349)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999874
No 465
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=70.30 E-value=2.1 Score=27.40 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 26 gsGKst~~~~l~~ 38 (236)
T 1q3t_A 26 SSGKSTVAKIIAK 38 (236)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
No 466
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=70.30 E-value=2.2 Score=25.16 Aligned_cols=14 Identities=7% Similarity=-0.107 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 34 GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 34 GTGRMTGARYLHQF 47 (145)
T ss_dssp TSSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999887754
No 467
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=70.29 E-value=2 Score=29.15 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.+++..
T Consensus 117 GsGKT~la~~la~~ 130 (324)
T 2z43_A 117 GSGKTQLCHQLSVN 130 (324)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHH
Confidence 79999999999854
No 468
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=70.27 E-value=2.1 Score=27.96 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+...+..
T Consensus 19 GsGKsTla~~la~ 31 (233)
T 3r20_A 19 GTGKSSVSRGLAR 31 (233)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988863
No 469
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.22 E-value=1.9 Score=30.66 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.++..
T Consensus 213 G~GKTtl~l~ia~ 225 (454)
T 2r6a_A 213 SVGKTAFALNIAQ 225 (454)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 470
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=70.20 E-value=2 Score=29.74 Aligned_cols=13 Identities=46% Similarity=0.422 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|..++..
T Consensus 17 gSGKTtla~~La~ 29 (340)
T 3d3q_A 17 ASGKTELSIEVAK 29 (340)
T ss_dssp TSSHHHHHHHHHH
T ss_pred cCcHHHHHHHHHH
Confidence 7999999998875
No 471
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=70.11 E-value=2 Score=28.93 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.+++..
T Consensus 108 gsGKT~la~~la~~ 121 (322)
T 2i1q_A 108 GSGKTQIMHQSCVN 121 (322)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999853
No 472
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.01 E-value=2.1 Score=28.81 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 65 GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 65 GLGKTTLANIISYE 78 (338)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998754
No 473
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=69.96 E-value=1.8 Score=30.50 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||++.++..
T Consensus 268 GSGKSTla~~L~~ 280 (416)
T 3zvl_A 268 GAGKSTFIQEHLV 280 (416)
T ss_dssp TSSHHHHHHHHTG
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 474
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=69.95 E-value=2.2 Score=27.47 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||++...|..
T Consensus 19 gsGKStv~~~l~~ 31 (210)
T 4i1u_A 19 GSGKTTVADLFAA 31 (210)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999876
No 475
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=69.35 E-value=1.9 Score=28.71 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 48 GtGKT~la~~i~~ 60 (324)
T 1hqc_A 48 GLGKTTLAHVIAH 60 (324)
T ss_dssp TCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 476
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=69.26 E-value=2.2 Score=28.51 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 59 GtGKT~la~ala~~ 72 (301)
T 3cf0_A 59 GCGKTLLAKAIANE 72 (301)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 89999999888753
No 477
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=69.21 E-value=1.7 Score=27.58 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=10.0
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|||||+++.-+.
T Consensus 10 GvGKTt~a~~LA 21 (254)
T 3kjh_A 10 GVGKTTVAAGLI 21 (254)
T ss_dssp SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999987765
No 478
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=69.14 E-value=2 Score=31.93 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHhCC
Q psy13093 1 AVGKTCLLISYTTNA 15 (111)
Q Consensus 1 gvGKssl~~~~~~~~ 15 (111)
|+|||||+.-+.+-.
T Consensus 55 GsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 55 SSGKSSVLEALSGVA 69 (608)
T ss_dssp TSCHHHHHHHHHSCC
T ss_pred CChHHHHHHHHhCCC
Confidence 799999999988653
No 479
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.10 E-value=2.2 Score=28.18 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 57 GtGKt~la~~la~~ 70 (311)
T 4fcw_A 57 GVGKTELAKTLAAT 70 (311)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 89999999887753
No 480
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=68.95 E-value=2.1 Score=30.34 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.+++..
T Consensus 210 g~GKT~lal~ia~~ 223 (444)
T 2q6t_A 210 AMGKTAFALTIAQN 223 (444)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998753
No 481
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.90 E-value=2.2 Score=29.26 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.+++..
T Consensus 132 GsGKTtla~~la~~ 145 (343)
T 1v5w_A 132 RTGKTQLSHTLCVT 145 (343)
T ss_dssp TCTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999864
No 482
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=68.73 E-value=2.3 Score=29.24 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|||||+|...+..
T Consensus 15 GsGKTtla~~La~ 27 (323)
T 3crm_A 15 AAGKTDLAMALAD 27 (323)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 483
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=68.69 E-value=2.3 Score=27.61 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=9.7
Q ss_pred CcchHHHHHHHH
Q psy13093 1 AVGKTCLLISYT 12 (111)
Q Consensus 1 gvGKssl~~~~~ 12 (111)
|||||++..-+.
T Consensus 11 GvGKTT~a~nLA 22 (269)
T 1cp2_A 11 GIGKSTTTQNLT 22 (269)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 899999976664
No 484
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=68.48 E-value=2.4 Score=26.54 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||++...+..
T Consensus 13 gsGkst~~~~l~~ 25 (219)
T 2h92_A 13 AAGKSTIAKRVAS 25 (219)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988765
No 485
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.42 E-value=2.3 Score=28.79 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..+...
T Consensus 55 GtGKT~la~ala~~ 68 (322)
T 1xwi_A 55 GTGKSYLAKAVATE 68 (322)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 89999999998863
No 486
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.23 E-value=2.3 Score=30.87 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.2
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+..++..
T Consensus 291 GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 291 GTGKTLLVSRFVEN 304 (525)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999853
No 487
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=68.22 E-value=2.4 Score=28.06 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 56 G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 56 GVGKTTAALALARE 69 (327)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 488
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=68.21 E-value=2.2 Score=31.09 Aligned_cols=13 Identities=38% Similarity=0.317 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+||||+++-++.
T Consensus 270 GSGKTTlL~aL~~ 282 (511)
T 2oap_1 270 ASGKTTTLNAIMM 282 (511)
T ss_dssp TSSHHHHHHHHGG
T ss_pred CCCHHHHHHHHHh
Confidence 8999999988775
No 489
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=68.09 E-value=2 Score=27.96 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+.-+..
T Consensus 37 GsGKSTll~~i~g 49 (227)
T 1qhl_A 37 GAGKSTTMAAFVT 49 (227)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc
Confidence 7999999887654
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=67.96 E-value=2.6 Score=26.65 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 26 GaGKStlal~L~~r 39 (181)
T 3tqf_A 26 NIGKSELSLALIDR 39 (181)
T ss_dssp SSSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 79999999999874
No 491
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=67.96 E-value=2.4 Score=28.31 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=12.1
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+++..+...
T Consensus 58 G~GKT~la~~la~~ 71 (324)
T 3u61_B 58 GTGKTTVAKALCHD 71 (324)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998753
No 492
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=67.86 E-value=2.4 Score=29.54 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.+++.
T Consensus 71 GsGKSTLal~la~ 83 (356)
T 3hr8_A 71 SSGKTTLALHAIA 83 (356)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998874
No 493
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=67.85 E-value=2.6 Score=29.03 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||+|+.++...
T Consensus 13 gsGKt~la~~La~~ 26 (322)
T 3exa_A 13 AVGKTKTSVMLAKR 26 (322)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh
Confidence 79999999999864
No 494
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=67.70 E-value=2.3 Score=30.35 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|+|||+|+.+++.+
T Consensus 207 G~GKTtlal~ia~~ 220 (444)
T 3bgw_A 207 SMGKTAFALKQAKN 220 (444)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHH
Confidence 79999999998753
No 495
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=67.68 E-value=2.5 Score=29.66 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||||+..+..
T Consensus 179 GsGKSTl~~~l~~ 191 (377)
T 1svm_A 179 DSGKTTLAAALLE 191 (377)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 7999999988764
No 496
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=67.62 E-value=2.4 Score=29.37 Aligned_cols=13 Identities=8% Similarity=-0.010 Sum_probs=11.2
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+|+.+++.
T Consensus 38 GsGKTtL~Lq~~~ 50 (333)
T 3io5_A 38 KSFKSNFGLTMVS 50 (333)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998863
No 497
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=67.54 E-value=2.2 Score=29.63 Aligned_cols=15 Identities=20% Similarity=0.031 Sum_probs=13.0
Q ss_pred cCceEEcccccccCC
Q psy13093 96 RLLWGSKQAREEKNE 110 (111)
Q Consensus 96 ~~~~~e~SAk~~~n~ 110 (111)
.+.+++|||++|.|+
T Consensus 326 ~~~~~~tSA~d~~nV 340 (362)
T 1zcb_A 326 PLYHHFTTAINTENI 340 (362)
T ss_dssp CCEEEECCTTCHHHH
T ss_pred ceEEEEEecCCchhH
Confidence 577899999999886
No 498
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.44 E-value=2.7 Score=29.19 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHhC
Q psy13093 1 AVGKTCLLISYTTN 14 (111)
Q Consensus 1 gvGKssl~~~~~~~ 14 (111)
|||||+|...+...
T Consensus 50 gsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 50 GTGKSRLSIDLAAH 63 (339)
T ss_dssp TSSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999863
No 499
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.22 E-value=2.6 Score=28.44 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 61 GtGKT~la~aia~ 73 (322)
T 3eie_A 61 GTGKSYLAKAVAT 73 (322)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999999998875
No 500
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=67.14 E-value=2.6 Score=28.99 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=11.6
Q ss_pred CcchHHHHHHHHh
Q psy13093 1 AVGKTCLLISYTT 13 (111)
Q Consensus 1 gvGKssl~~~~~~ 13 (111)
|+|||+++..+..
T Consensus 82 GtGKT~la~~la~ 94 (376)
T 1um8_A 82 GSGKTLMAQTLAK 94 (376)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
Done!