RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13093
(111 letters)
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 154 bits (392), Expect = 3e-49
Identities = 48/63 (76%), Positives = 54/63 (85%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG+ +NLGLWDTAGQEDY RLRPLSY
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY 78
Query: 61 PQT 63
Sbjct: 79 RGA 81
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 153 bits (388), Expect = 6e-49
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL++++ P Y+PTVF+N+S + + L LWDTAGQE+YDRLRPLSY
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92
Query: 61 PQT 63
+
Sbjct: 93 ADS 95
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 144 bits (365), Expect = 1e-45
Identities = 48/63 (76%), Positives = 56/63 (88%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G +NLGLWDTAGQEDY+RLRPLSY
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSY 77
Query: 61 PQT 63
Sbjct: 78 RGA 80
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 144 bits (366), Expect = 2e-45
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKT L++SYTTN +P EYIPT FDN+SA V VDG+P+ L L DTAGQ+++D+LRPL Y
Sbjct: 30 AVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCY 89
Query: 61 PQT 63
T
Sbjct: 90 TNT 92
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 144 bits (365), Expect = 3e-45
Identities = 36/63 (57%), Positives = 44/63 (69%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL+ + AFP Y PTVF+ Y N+ V GKP++L +WDTAGQ+DYDRLRPL Y
Sbjct: 44 GCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFY 103
Query: 61 PQT 63
P
Sbjct: 104 PDA 106
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 143 bits (363), Expect = 6e-45
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSY
Sbjct: 38 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 97
Query: 61 PQT 63
P +
Sbjct: 98 PDS 100
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 143 bits (362), Expect = 6e-45
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQT 63
P T
Sbjct: 95 PDT 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 143 bits (362), Expect = 7e-45
Identities = 62/63 (98%), Positives = 63/63 (100%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 99
Query: 61 PQT 63
PQT
Sbjct: 100 PQT 102
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 141 bits (358), Expect = 2e-44
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQT 63
P T
Sbjct: 95 PDT 97
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 139 bits (352), Expect = 1e-43
Identities = 46/63 (73%), Positives = 53/63 (84%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V GK LGL+DTAGQEDYDRLRPLSY
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87
Query: 61 PQT 63
P T
Sbjct: 88 PMT 90
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 137 bits (346), Expect = 1e-42
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSY
Sbjct: 17 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 76
Query: 61 PQT 63
P +
Sbjct: 77 PDS 79
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 133 bits (336), Expect = 7e-41
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT +L + +P Y+PTVF+NY+A + + + + L LWDT+G YD +RPL Y
Sbjct: 37 QCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCY 96
Query: 61 PQT 63
+
Sbjct: 97 SDS 99
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 131 bits (331), Expect = 2e-40
Identities = 62/63 (98%), Positives = 63/63 (100%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 74
Query: 61 PQT 63
PQT
Sbjct: 75 PQT 77
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 104 bits (261), Expect = 1e-28
Identities = 60/62 (96%), Positives = 61/62 (98%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSYP
Sbjct: 166 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 62 QT 63
QT
Sbjct: 226 QT 227
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 78.7 bits (195), Expect = 6e-20
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+VGK+ L I + F Y PT+ + ++ + V+G+ +L L DTAGQ++Y
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS 75
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 78.3 bits (194), Expect = 7e-20
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + T F +Y PT+ D Y + VD P L + DTAG E + +R L
Sbjct: 13 GVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYI 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 77.5 bits (192), Expect = 1e-19
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F E PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 13 GVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 72
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 78.0 bits (193), Expect = 1e-19
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + + F +Y PT+ D+Y+ VDG P L + DTAGQE++ +R
Sbjct: 19 GVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM 78
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 78.0 bits (193), Expect = 2e-19
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L + F Y PTV + YS V + +L L DTAGQ++Y L
Sbjct: 34 CVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 77.6 bits (192), Expect = 2e-19
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + F +Y PT+ D+Y + +D + L + DTAGQE++ +R
Sbjct: 28 GVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYM 87
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 77.2 bits (191), Expect = 2e-19
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F YIPTV D Y + D L + DT G + ++ LS
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSI 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 77.3 bits (191), Expect = 3e-19
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 31 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 90
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 76.7 bits (190), Expect = 3e-19
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 73
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 77.3 bits (191), Expect = 3e-19
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F YIPT+ D Y + D L + DT G + ++ LS
Sbjct: 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSI 77
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 76.8 bits (190), Expect = 4e-19
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 87
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 76.9 bits (190), Expect = 4e-19
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+ L + + T F EY P + D YS+ VD +P++L + DTA +
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP 82
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 76.9 bits (190), Expect = 4e-19
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 73
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 76.0 bits (188), Expect = 5e-19
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG E + +R L
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYM 72
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 76.1 bits (188), Expect = 1e-18
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 83
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 75.7 bits (187), Expect = 1e-18
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + T F EY PT+ Y +D + +++ + DTAGQED R
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-IQREGHM 96
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 72.6 bits (179), Expect = 2e-17
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ L ++ + P D Y +MVD + + L ++D Q D
Sbjct: 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 71.4 bits (176), Expect = 3e-17
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ L ++ + D Y +MVD + + L ++D Q D
Sbjct: 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 71.0 bits (175), Expect = 5e-17
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + G Y +++VDG+ +L ++D Q+ L
Sbjct: 12 GVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM 70
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 70.7 bits (174), Expect = 7e-17
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD 53
VGKT L + + D Y + VDG+ L + DT E D
Sbjct: 14 GVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 69.9 bits (172), Expect = 2e-16
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+ L+ Y T + E P + ++VDG+ L + D G +
Sbjct: 31 SGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPEL 80
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 69.6 bits (171), Expect = 2e-16
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+ L+ + T ++ T + Y ++VDG+ + + + AG D
Sbjct: 17 RSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 67.7 bits (166), Expect = 2e-15
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ LL+ +T + F E T+ D + VDG L +WDTAGQE +
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 67.2 bits (165), Expect = 2e-15
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKTCL + FP T+ D V +DG+ I + LWDTAGQE +
Sbjct: 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 66.7 bits (164), Expect = 2e-15
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
AVGK+ ++ Y F +Y T+ D + V+ + + L LWDTAGQE++
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 68.1 bits (167), Expect = 2e-15
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD-G 83
Query: 60 Y 60
Y
Sbjct: 84 Y 84
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 67.2 bits (165), Expect = 2e-15
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL +T F + T+ + + + V G+ I L +WDTAGQE +
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 67.2 bits (165), Expect = 2e-15
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+CLL + F + T+ + S + V GK + L +WDTAGQE +
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 72
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 66.8 bits (164), Expect = 2e-15
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ LL+ + N F G YI T+ D V ++G+ + L +WDTAGQE +
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF 71
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 66.9 bits (164), Expect = 3e-15
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+CLL + N F + T+ + S V V GK + L +WDTAGQE +
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 87
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 66.9 bits (164), Expect = 3e-15
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
+VGKTC++ + T AF T+ D + + GK + L +WDTAGQE +
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF 91
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 66.4 bits (163), Expect = 3e-15
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQE 50
VGK+ L+ Y TN F + T+ + + ++ VDG + + +WDTAGQE
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 66.9 bits (164), Expect = 4e-15
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
AVGK+ L+ N F T+ D ++VDG+ L LWDTAGQE +
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 66.5 bits (163), Expect = 4e-15
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKTC+L ++ +AF +I T+ D + +DGK I L +WDTAGQE +
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 66.9 bits (164), Expect = 4e-15
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKTCL+ +T FP T+ D V ++G+ + L +WDTAGQE +
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 88
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 66.5 bits (163), Expect = 4e-15
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ LL +T N F E T+ + + ++ VDGK I +WDTAG E Y
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 66.0 bits (162), Expect = 4e-15
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL+ + + F +I T+ D V ++GK + L +WDTAGQE +
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 66.5 bits (163), Expect = 4e-15
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
+VGKT L Y ++F ++ TV D V K I L +WDTAGQE Y
Sbjct: 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 67.0 bits (164), Expect = 4e-15
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPT--VFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGKT + F Y T ++ + G I +WDTAGQE L+ +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 59 SY 60
Y
Sbjct: 81 YY 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 66.5 bits (163), Expect = 5e-15
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL+ + + + YI T+ D + +DGK I L +WDTAGQE +
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 66.1 bits (162), Expect = 5e-15
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL+ +T F + T+ + + V +DGK I L +WDTAGQE +
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 83
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 66.1 bits (162), Expect = 5e-15
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKT LL +T N F + T+ + + VM+ + +WDTAG E Y
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 87
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 66.6 bits (163), Expect = 6e-15
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ LL +T N F + T+ + + + ++GK I +WDTAGQE Y
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY 75
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 66.1 bits (162), Expect = 6e-15
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL+ + + + YI T+ D + +DGK I L +WDTAGQE +
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 78
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 66.1 bits (162), Expect = 6e-15
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
+VGKT L Y ++F ++ TV D + + K I L +WDTAG E Y
Sbjct: 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 65.7 bits (161), Expect = 7e-15
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKT L+ +T + F TV D V + GK I L +WDTAGQE +
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 66.2 bits (162), Expect = 7e-15
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL+ ++ + + +YI T+ D V +DGK + L +WDTAGQE +
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 65.7 bits (161), Expect = 9e-15
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
+VGKT L Y + F ++ TV D V K + L +WDTAGQE Y
Sbjct: 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 65.8 bits (161), Expect = 1e-14
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ LL +T N F E T+ + + ++ VDGK I +WDTAGQE Y
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 65.8 bits (161), Expect = 1e-14
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL+ + + F +I T+ D V ++GK + L LWDTAGQE +
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 65.4 bits (160), Expect = 1e-14
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKT L+ Y F +Y T+ D + VMVD + + + +WDTAGQE +
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 64.4 bits (158), Expect = 2e-14
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKT L++ Y N F ++I T+ + + + GK +NL +WDTAGQE +
Sbjct: 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 64.0 bits (156), Expect = 2e-14
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ +++ + +N F PT+ + V ++ + +WDTAGQE + L P
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXY 72
Query: 60 Y 60
Y
Sbjct: 73 Y 73
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 64.1 bits (157), Expect = 2e-14
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
AVGK+ L++ + F T+ + V +D + +WDTAGQE Y
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 63.7 bits (156), Expect = 4e-14
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+ L++ + + F T+ +S + V+ + +WDTAGQE Y
Sbjct: 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 63.5 bits (155), Expect = 7e-14
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAG E R R L
Sbjct: 26 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE---RFRSLI 82
Query: 59 -SY 60
SY
Sbjct: 83 PSY 85
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 62.6 bits (153), Expect = 9e-14
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAGQE R R L
Sbjct: 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---RFRSLI 80
Query: 59 -SY 60
SY
Sbjct: 81 PSY 83
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 62.6 bits (153), Expect = 1e-13
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 AVGKTCLLISYTTNAF-PGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKTCLL+ + AF G +I TV D + + VDG + L +WDTAGQE +
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF 73
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 62.6 bits (153), Expect = 1e-13
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ ++ + + F PT+ + V + +WDTAGQE +
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 61.7 bits (151), Expect = 1e-13
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
VGK+ ++ + ++F PT+ F + V + +WDTAG E R R
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNELHKFLIWDTAGLE---RFRA 70
Query: 58 L--SY 60
L Y
Sbjct: 71 LAPMY 75
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 61.5 bits (150), Expect = 3e-13
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-----------FDNYSANVMVDGKPINLGLWDTAGQ 49
VGKT +L YT F ++I TV N + G+ I+L LWDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 50 EDY 52
E +
Sbjct: 81 ERF 83
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 60.6 bits (148), Expect = 5e-13
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP-INLGLWDTAGQEDY 52
A GKT L + F +Y T+ D + + + G + L +WD GQ
Sbjct: 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG 69
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 61.2 bits (149), Expect = 5e-13
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPINLGL---WDTAGQEDYDRL 55
VGK+ L + + + D Y +MVDG+ + L W+ G+ ++ L
Sbjct: 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 104
Query: 56 RPLSY 60
Sbjct: 105 HDHCM 109
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 60.3 bits (147), Expect = 9e-13
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDG-KPINLGLWDTAGQE 50
VGKT L+ Y + + +Y T+ D + V VDG K + +WDTAGQE
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 59.7 bits (145), Expect = 2e-12
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP----------INLGLWDTAGQ 49
VGKT L YT N F ++I TV D V+ + + ++L LWDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 50 EDY 52
E +
Sbjct: 95 ERF 97
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 58.5 bits (142), Expect = 4e-12
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 1 AVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMVDGKPINLGL---WDTAGQEDYDRL 55
VGK+ L + + D Y +MVDG+ + L W+ G+ ++ L
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 73
Query: 56 RPLSY 60
Sbjct: 74 HDHCM 78
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 56.9 bits (138), Expect = 2e-11
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 1 AVGKTCLLISYT--TNAFPGEYIPTV-FDNYSANVMVDGKPINLGLW--DTAGQEDY 52
VGK+ L+ +T + F +Y T + A V + +++ L+ DTAG + Y
Sbjct: 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY 86
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 55.1 bits (133), Expect = 7e-11
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 1 AVGKTCLLISYTTNAFP--GEYIPTV---FDNYSANVMVDGK---PINLGLWDTAGQEDY 52
GKT LL G TV ++ + + K + L +WD AG+E++
Sbjct: 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWP--IQIRDKRKRDLVLNVWDFAGREEF 69
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 45.0 bits (106), Expect = 9e-07
Identities = 14/61 (22%), Positives = 16/61 (26%), Gaps = 9/61 (14%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV---------DGKPINLGLWDTAGQED 51
GKT LL F + T N + K WD GQE
Sbjct: 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI 110
Query: 52 Y 52
Sbjct: 111 M 111
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 43.3 bits (102), Expect = 2e-06
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 38/90 (42%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLG----------------- 42
+VGK+ +++ T + F T+ + V ++ I
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76
Query: 43 --------------------LWDTAGQEDY 52
+WDTAGQE Y
Sbjct: 77 VIITNQHNNYNENLCNIKFDIWDTAGQERY 106
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 36.3 bits (84), Expect = 7e-04
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 1 AVGKTCLL----------ISYTTNAFPGEYIPTVFDNYSANVM--VDGKPINLGLWDTAG 48
GKT L + E T+F ++ + V G L+ G
Sbjct: 24 LSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPG 83
Query: 49 QEDYDRLRPLSYPQT 63
Q Y+ R L
Sbjct: 84 QVFYNASRKLILRGV 98
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 35.6 bits (83), Expect = 0.001
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 3 GKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT + + F + IPTV F N+ + + + LWD GQ R R +
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVGF-----NMRKITKGNVTIKLWDIGGQ---PRFRSM 83
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 33.2 bits (76), Expect = 0.008
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
GKT L + T + + ++ D+ + + + + +L L D G E LR
Sbjct: 19 GKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE---SLRF 69
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 32.7 bits (74), Expect = 0.012
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 1 AVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
GK+ + +N + T+ +S + + L LWD GQ+ +
Sbjct: 13 GSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGNMTLNLWDCGGQDVFMENYF 70
Query: 58 LSYPQTWSLRSFAL 71
L
Sbjct: 71 TKQKDHIFQMVQVL 84
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.4 bits (74), Expect = 0.014
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT LL TT++ + + D + L D G +LR
Sbjct: 60 GKTSLLTLLTTDSVR-PTVVSQE----PLSAADYDGSGVTLVDFPGHV---KLRYK 107
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 32.0 bits (73), Expect = 0.019
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 3 GKTCLLISYTTNAFPGEYIPTV--FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT LL TT PTV + D + L D G +LR
Sbjct: 24 GKTSLLTLLTT----DSVRPTVVSQEP---LSAADYDGSGVTLVDFPGHV---KLRYK 71
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 31.1 bits (71), Expect = 0.048
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 1 AVGKTCLLISY---TTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRL 55
GKT ++ +NA +PT+ F ++ ++ ++D +GQ R
Sbjct: 31 NSGKTTII--NKLKPSNAQSQNILPTIGF-----SIEKFKSSSLSFTVFDMSGQ---GRY 80
Query: 56 RPL 58
R L
Sbjct: 81 RNL 83
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 30.7 bits (69), Expect = 0.068
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 1 AVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL 55
GK+ + P E T + + + +N +WD GQ D+
Sbjct: 30 RSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPGQMDFFDP 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.11
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 18/78 (23%)
Query: 43 LWDTAGQEDYDRLRPLSYPQTWSLRSFALHAGHP----VRF--PRGRKIRIMQMIGFRDR 96
+W+ A D +Y +S+ ++ P + F +G++IR +
Sbjct: 1645 VWNRA-----DNHFKDTY--GFSILDIVINN--PVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 97 LLWGSKQAR---EEKNEK 111
++ G + +E NE
Sbjct: 1696 IVDGKLKTEKIFKEINEH 1713
Score = 25.4 bits (55), Expect = 4.9
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 62 QTWSLRSFALHAG---HPVRFPRGRKIRIMQMIGFRDR 96
+S R L G H + P Q+ +++
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQL---QEQ 36
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 29.9 bits (68), Expect = 0.11
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT LL + PT F N+ V + L +WD GQ ++RP
Sbjct: 26 NAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDIGGQ---RKIRPY 76
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.9 bits (68), Expect = 0.12
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 3 GKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT LL + G+++PT+ + + +D G + R +
Sbjct: 37 GKTTLLHMLKDDRL-GQHVPTLHP-----TSEELTIAGMTFTTFDLGGH---IQARRV 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 29.5 bits (67), Expect = 0.14
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L IPT+ F NV V K + +WD G +RP
Sbjct: 17 GAGKTTILYRLQVGEV-VTTIPTIGF-----NVETVTYKNLKFQVWDLGGL---TSIRPY 67
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 29.6 bits (67), Expect = 0.16
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
A GKT +L IPT+ F NV V+ K I +WD GQ D++RPL
Sbjct: 39 AAGKTTILYKLKLGEIV-TTIPTIGF-----NVETVEYKNICFTVWDVGGQ---DKIRPL 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 29.5 bits (67), Expect = 0.16
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
A GKT +L IPT+ F NV V+ K I+ +WD GQ D++RPL
Sbjct: 10 AAGKTTILYKLKLGEIV-TTIPTIGF-----NVETVEYKNISFTVWDVGGQ---DKIRPL 60
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 29.5 bits (67), Expect = 0.17
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L + PT+ F N+ ++ + L +WD GQ LR
Sbjct: 28 NAGKTTILKKFNGEDVD-TISPTLGF-----NIKTLEHRGFKLNIWDVGGQ---KSLRSY 78
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 29.1 bits (66), Expect = 0.18
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L +PTV N+ + K I+ +WD GQ +RP
Sbjct: 32 NAGKTSILYRLHLGDV-VTTVPTVGV-----NLETLQYKNISFEVWDLGGQ---TGVRPY 82
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 28.8 bits (65), Expect = 0.24
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L PT+ F NV + K + L +WD GQ +RP
Sbjct: 28 GAGKTTILYRLQIGEVV-TTKPTIGF-----NVETLSYKNLKLNVWDLGGQ---TSIRPY 78
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 29.1 bits (65), Expect = 0.25
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Query: 21 IPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
IPTV F NV V K + +WD GQ D++RPL
Sbjct: 351 IPTVGF-----NVETVTYKNVKFNVWDVGGQ---DKIRPL 382
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 28.8 bits (65), Expect = 0.28
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L ++ N PT+ NV + +WD GQ + LR
Sbjct: 31 NAGKTTILYQFSMNEVV-HTSPTIGS-----NVEEIVINNTRFLMWDIGGQ---ESLRSS 81
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 28.8 bits (65), Expect = 0.32
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L ++ N PT+ NV + +WD GQ + LR
Sbjct: 26 NAGKTTILYQFSMNEVV-HTSPTIGS-----NVEEIVINNTRFLMWDIGGQ---ESLRSS 76
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 28.7 bits (64), Expect = 0.39
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 10/40 (25%)
Query: 21 IPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
IPT+ F NV V+ K I+ +WD GQ D++RPL
Sbjct: 194 IPTIGF-----NVETVEYKNISFTVWDVGGQ---DKIRPL 225
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 26.6 bits (58), Expect = 1.9
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 8/105 (7%)
Query: 14 NAFPGEYIPTVF---DNYSANVMVDGKPINLGLWDTAGQED--YD---RLRPLSYPQTWS 65
+A +P D N + G+ + + W+ +G D +D +
Sbjct: 164 SALAAHPLPLAACHCDPLCENFLDTGERMWIVDWEYSGMNDPLWDLGDLSVEGKFNANQD 223
Query: 66 LRSFALHAGHPVRFPRGRKIRIMQMIGFRDRLLWGSKQAREEKNE 110
+ G R ++ I + + LWG Q +
Sbjct: 224 EELMRAYFGGEARPAERGRVVIYKAMCDLLWTLWGLIQLANDNPV 268
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 26.3 bits (57), Expect = 2.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 92 GFRDRLLWGSKQAREEKNEK 111
F+ RLLWGS+ A + +
Sbjct: 280 EFQMRLLWGSQGASSSQARR 299
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 4.1
Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 40/118 (33%)
Query: 3 GKTCLLIS-----YTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR--- 54
GKT + + + +F W +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFK----IF------------------WLNLKNCNSPETVL 199
Query: 55 --LRPLSY---PQTWSLRSFALHAGHPVRFPRGRKIRIMQMIGFRDRLL-----WGSK 102
L+ L Y P S + + + + R+++ + + LL +K
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate
binding protein, selectivity helix, TR membrane; HET:
4CS; 2.90A {Silicibacter pomeroyi dss-3}
Length = 326
Score = 25.4 bits (56), Expect = 4.8
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 16/77 (20%)
Query: 21 IPTVFDNYS---ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTWS--LRSFALHAGH 75
+P + A + K IN D L L+ + +
Sbjct: 93 VPYLLPTDQDHLARFFKESKAINDMFKPLY--ADQG-LELLNM---FPEGEVAMT--TKT 144
Query: 76 PVRFP---RGRKIRIMQ 89
PV K R+M
Sbjct: 145 PVTTCSDLDEVKFRVMT 161
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A
{Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Length = 138
Score = 24.8 bits (54), Expect = 6.5
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 10 SYTTNAFPGEYIPTVFDNYSANVMVDGKPI 39
S+ + G+ + ++ A++ +
Sbjct: 2 SHMASMTGGQQMGRGSGSHMASMTGGQQMG 31
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 25.2 bits (56), Expect = 6.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 76 PVRFPRGRKIR 86
P+R GRKIR
Sbjct: 343 PIRLEEGRKIR 353
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 24.5 bits (53), Expect = 6.8
Identities = 7/21 (33%), Positives = 7/21 (33%)
Query: 19 EYIPTVFDNYSANVMVDGKPI 39
YIP Y V G I
Sbjct: 83 TYIPDKTGRYMIGVTYGGDDI 103
>1tie_A Erythrina trypsin inhibitor; proteinase inhibitor (trypsin);
2.50A {Erythrina caffra} SCOP: b.42.4.1
Length = 172
Score = 24.6 bits (53), Expect = 6.9
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 34 VDGKPINLG--------LWDTAGQEDYDRLRPLSYPQTWSLRSFALHAGHPVRF---PRG 82
+G+ + G +W G + + P T L G P+R R
Sbjct: 5 GNGEVVQNGGTYYLLPQVWAQGGGVQLAKTGEETCPLTVVQSPNELSDGKPIRIESRLRS 64
Query: 83 RKIRIMQMIGF 93
I +
Sbjct: 65 AFIPDDDKVRI 75
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 111
Score = 24.4 bits (53), Expect = 7.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 20 YIPTVFDNYSANVMVDGKPI 39
Y+PT +YS V D K I
Sbjct: 70 YLPTAPGDYSIIVRFDDKHI 89
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 105
Score = 24.3 bits (53), Expect = 7.4
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 19 EYIPTVFDNYSANVMVDGKPI 39
EYIP +Y N+ G I
Sbjct: 69 EYIPFAPGDYDVNITYGGAHI 89
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 24.7 bits (53), Expect = 7.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 93 FRDRLLWGSKQAREEKNEK 111
F+ RLLWGSK A+ + E+
Sbjct: 282 FQMRLLWGSKGAQVNQTER 300
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 128
Score = 24.4 bits (53), Expect = 7.7
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 19 EYIPTVFDNYSANVMVDGKPI 39
EY P + V D PI
Sbjct: 86 EYTPFEKGLHVVEVTYDDVPI 106
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin
binding protein, cytoskeleton, complex; 2.32A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 24.3 bits (53), Expect = 7.8
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 20 YIPTVFDNYSANVMVDGKPI 39
Y+P + +YS V + + +
Sbjct: 65 YLPVLPGDYSILVKYNEQHV 84
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA
complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus}
PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A*
3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3t3f_A* 4df4_A*
4df8_A* 4dfj_A* 3rrh_A* 4dfm_A* 4dfp_A* 1ktq_A* 5ktq_A*
...
Length = 540
Score = 24.9 bits (55), Expect = 8.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 76 PVRFPRGRKIR 86
PVR P G++IR
Sbjct: 293 PVRTPLGQRIR 303
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 108
Score = 23.9 bits (52), Expect = 9.0
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 20 YIPTVFDNYSANVMVDGKPI 39
Y P+ Y +V + I
Sbjct: 73 YTPSQEGPYMVSVKYADEEI 92
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 24.7 bits (54), Expect = 9.9
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 38 PINLGLWDTAGQEDYDRLRPLSYPQTWSLRSFALHAGHPVRF 79
I LG DT ++ PQ W A G +R
Sbjct: 113 RIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGERLRT 154
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 131
Score = 24.1 bits (52), Expect = 10.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 20 YIPTVFDNYSANVMVDGKPI 39
Y+PT Y N++ + I
Sbjct: 90 YLPTKPGEYFVNILFEEVHI 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.440
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,770,029
Number of extensions: 93101
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 127
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)