BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13096
         (244 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C9A|A Chain A, High Resolution Crystal Structure Of Argos Bound To The
           Egf Domain Of Spitz
 pdb|3C9A|B Chain B, High Resolution Crystal Structure Of Argos Bound To The
           Egf Domain Of Spitz
 pdb|3CGU|A Chain A, Crystal Structure Of Unliganded Argos
 pdb|3CGU|B Chain B, Crystal Structure Of Unliganded Argos
          Length = 223

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 69  LPECAVQQVCNAVYV-RLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTL 127
           LP CA   VC+ + +    + +  C CP      C +S+  +D HT    T         
Sbjct: 26  LPVCAPNAVCSKIDLYETPWIERQCRCPDG--RTCPSSLGVEDGHTIADKT-------RH 76

Query: 128 VKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSIL----EGPMSHDQPT 183
            K C+PV  + +C+  RD++           +  +V CRCP +S+       P+ +D P 
Sbjct: 77  YKMCQPVHKLPVCKHFRDYTWTLTTAAELNVTEQIVHCRCPRNSVTYLTKREPIGNDSPG 136

Query: 184 Y 184
           Y
Sbjct: 137 Y 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,908,274
Number of Sequences: 62578
Number of extensions: 265596
Number of successful extensions: 502
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 11
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)