BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13096
         (244 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q92752|TENR_HUMAN Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3
          Length = 1358

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 20/137 (14%)

Query: 67  YLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREP-CSASINSDDF-------HTTELTT 118
           Y+  +C  +Q  NA   R    + LC C   Y+ P CSA    +D         + EL  
Sbjct: 287 YVGEDCGQRQCLNACSGRGQCEEGLCVCEEGYQGPDCSAVAPPEDLRVAGISDRSIELEW 346

Query: 119 DPQGKVLTLVKTCEPVLDMRL---CRSPRDWSLLALQNIRTGKSH----YLVICRCPDSS 171
           D    V   V + +P     L    R P DWS + +  +  G ++    Y VI     S+
Sbjct: 347 DGPMAVTEYVISYQPTALGGLQLQQRVPGDWSGVTITELEPGLTYNISVYAVI-----SN 401

Query: 172 ILEGPMSHDQPTYASVP 188
           IL  P++    T+ S P
Sbjct: 402 ILSLPITAKVATHLSTP 418


>sp|Q05546|TENR_RAT Tenascin-R OS=Rattus norvegicus GN=Tnr PE=1 SV=1
          Length = 1356

 Score = 33.5 bits (75), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 19/139 (13%)

Query: 64  QHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREP-CSASINSDDF-------HTTE 115
           Q  Y   +C+ ++  NA   R +  + LC C   Y+ P CSA    +D         + E
Sbjct: 284 QEGYAGEDCSQRRCLNACSGRGHCQEGLCICEEGYQGPDCSAVTPPEDLRVAGISDRSIE 343

Query: 116 LTTDPQGKVLTLVKTCEPVL-DMRL-CRSPRDWSLLALQNIRTGKSH----YLVICRCPD 169
           L  D    V   V + +P L  ++L  R P DWS + +  +  G ++    Y VI     
Sbjct: 344 LEWDGPMAVTEYVISYQPSLGGLQLQQRVPGDWSGVTITELEPGLTYNISVYAVI----- 398

Query: 170 SSILEGPMSHDQPTYASVP 188
           S+IL  P++    T+ S P
Sbjct: 399 SNILSLPITAKVATHLSTP 417


>sp|Q8BYI9|TENR_MOUSE Tenascin-R OS=Mus musculus GN=Tnr PE=1 SV=2
          Length = 1358

 Score = 31.6 bits (70), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 20/140 (14%)

Query: 64  QHIYLLPECAVQQVCNAVYVRLNYTQPLCACPSRYREP-CSASINSDDF-------HTTE 115
           Q  Y   +C+ ++  NA   R +  + LC C   Y+ P CSA    +D         + E
Sbjct: 284 QEGYAGEDCSQRRCLNACSGRGHCQEGLCICEEGYQGPDCSAVAPPEDLRVAGISDRSIE 343

Query: 116 LTTDPQGKVLTLVKTCEPVLDMRL---CRSPRDWSLLALQNIRTGKSH----YLVICRCP 168
           L  D    V   V + +P     L    R P DWS + +  +  G ++    Y VI    
Sbjct: 344 LEWDGPMAVTEYVISYQPTALGGLQLQQRVPGDWSGVTIMELEPGLTYNISVYAVI---- 399

Query: 169 DSSILEGPMSHDQPTYASVP 188
            S+IL  P++    T+ S P
Sbjct: 400 -SNILSLPITAKVATHLSTP 418


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,559,110
Number of Sequences: 539616
Number of extensions: 3690402
Number of successful extensions: 7345
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7343
Number of HSP's gapped (non-prelim): 8
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)