Query psy13096
Match_columns 244
No_of_seqs 26 out of 28
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 19:25:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11581 Argos: Antagonist of 99.9 1.6E-28 3.4E-33 200.6 4.7 76 112-199 1-78 (129)
2 PF11581 Argos: Antagonist of 93.8 0.012 2.6E-07 49.3 -0.9 32 70-103 88-120 (129)
3 PF09468 RNase_H2-Ydr279: Ydr2 45.3 15 0.00031 32.3 1.9 46 26-74 2-49 (304)
4 PF00954 S_locus_glycop: S-loc 25.4 48 0.001 24.9 1.7 35 66-100 72-108 (110)
5 PF09064 Tme5_EGF_like: Thromb 25.1 36 0.00078 23.3 0.8 14 86-99 14-27 (34)
6 PF12661 hEGF: Human growth fa 24.9 16 0.00035 19.9 -0.7 11 91-101 1-11 (13)
7 PF10356 DUF2034: Protein of u 21.4 1.2E+02 0.0027 26.4 3.6 42 159-203 85-133 (185)
8 PF01686 Adeno_Penton_B: Adeno 20.7 65 0.0014 32.2 2.0 31 11-41 185-215 (456)
9 PF13323 HPIH: N-terminal doma 20.5 1.2E+02 0.0026 25.4 3.3 39 25-71 92-130 (153)
10 KOG1214|consensus 19.4 42 0.00091 36.6 0.4 111 68-200 733-866 (1289)
No 1
>PF11581 Argos: Antagonist of EGFR signalling, Argos; InterPro: IPR021633 Argos is a natural secreted antagonist of EGFR signalling which functions by binding growth factor ligands that activate EGFR by forming a clamp like structure using three disulphide-bonded beta-sheet domains []. ; PDB: 3CGU_A 3C9A_A.
Probab=99.95 E-value=1.6e-28 Score=200.58 Aligned_cols=76 Identities=33% Similarity=0.597 Sum_probs=62.6
Q ss_pred ceeEeecCCCCceeeEEecccccccCcccCCCCc--ceeeecccccCCceEEEEEeecCCCCccccCCCCCCCCcCCCCC
Q psy13096 112 HTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRD--WSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPG 189 (244)
Q Consensus 112 HTi~d~~d~~~kkttl~KtCEPV~~lp~CR~fRD--WsLlalqn~rtgkS~ylViCRCP~~svl~gpmshdqP~yas~pG 189 (244)
|||+| |||+||+|||||+||+||+||| |+|++. +.+|+|+|+||||||++||++ |.++||.-+|++|
T Consensus 1 hti~d-------ktr~yk~cepvkrlp~cr~frd~twtl~~~--~~~n~t~Q~V~C~Cp~~Sv~Y--l~kr~p~~~g~~g 69 (129)
T PF11581_consen 1 HTIAD-------KTRQYKLCEPVKRLPKCRYFRDYTWTLTSG--PDANATEQIVHCRCPKNSVTY--LTKRQPYNNGNPG 69 (129)
T ss_dssp SEEEE-------TTEEEEESS-GGGS-B--TTTSEEEEEEEE--TTTTEEEEEE-SB--TTEEEE--EEEEEE--TTS-C
T ss_pred Cccch-------hcceeecccchhhcchhheeccceEEEecC--CCCCceeEEEEeecCCCccce--eeeccccCCCCcc
Confidence 99999 9999999999999999999999 999997 448999999999999999998 9999999999999
Q ss_pred ceEEEEEeec
Q psy13096 190 IRVYGMMCVN 199 (244)
Q Consensus 190 irVYgm~C~~ 199 (244)
++|.|||||
T Consensus 70 -~~Y~FaCSP 78 (129)
T PF11581_consen 70 -FQYAFACSP 78 (129)
T ss_dssp -EEEEEEEEE
T ss_pred -eEEEEecCh
Confidence 559999999
No 2
>PF11581 Argos: Antagonist of EGFR signalling, Argos; InterPro: IPR021633 Argos is a natural secreted antagonist of EGFR signalling which functions by binding growth factor ligands that activate EGFR by forming a clamp like structure using three disulphide-bonded beta-sheet domains []. ; PDB: 3CGU_A 3C9A_A.
Probab=93.81 E-value=0.012 Score=49.31 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=25.1
Q ss_pred Ccchhhhhhceeeeec-CCCCCcccCCCCCCCCCc
Q psy13096 70 PECAVQQVCNAVYVRL-NYTQPLCACPSRYREPCS 103 (244)
Q Consensus 70 PECa~qqVCnkVd~y~-n~tqp~CrCp~~y~~pCs 103 (244)
--|+.+.||++++++. +|+++||+||.+ .-||
T Consensus 88 ePC~lftVrkr~e~~eevni~~lCqCP~~--hrCP 120 (129)
T PF11581_consen 88 EPCRLFTVRKRQELYEEVNIERLCQCPKG--HRCP 120 (129)
T ss_dssp SESEEEEEEEEECTCCCEEEEE-SB-STT--EE--
T ss_pred CCcchhhhhhhHhhhhcccchhcccCCCC--CcCC
Confidence 3599999999999887 999999999999 6677
No 3
>PF09468 RNase_H2-Ydr279: Ydr279p protein family (RNase H2 complex component); InterPro: IPR019024 This entry represents the non-catalytic subunit B of RNase H2, an endonuclease that specifically degrades RNA when annealed to a complementary DNA, and which is present in all eukaryotic organisms. RNase H2 participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. It mediates the excision of single ribonucleotides from DNA:RNA duplexes. In Saccharomyces cerevisiae (Baker's yeast), RNase H2 is a heterotrimer composed of the catalytic subunit RNH201 and of the non-catalytic subunits RNH202 and RNH203 (or Rnh2Ap, Ydr279p and Ylr154p); this family represents the homologues of RNH202 (or Ydr279p) []. It is not known whether non yeast proteins in this family fulfil the same function. ; GO: 0005634 nucleus; PDB: 3KIO_B 3P5J_B 3P56_E 3PUF_H 3P87_J.
Probab=45.27 E-value=15 Score=32.30 Aligned_cols=46 Identities=24% Similarity=0.461 Sum_probs=34.4
Q ss_pred ceEEecccccccc--ccccCCCCCCCCccCCceeeeccCCCceeeCCcchh
Q psy13096 26 QHIYLLPECAVQQ--ENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAV 74 (244)
Q Consensus 26 ~~~~~~~~~~vqq--~~~~~p~g~~~~~~kPtkyhYyphnqhiylLPECa~ 74 (244)
.++.+||+++... ..+.||--. ..+++.|.+-+++..||||=....
T Consensus 2 ~rv~iLP~~~~~~~~~iv~LphP~---~~~~~~yl~~~~~~~lyEl~~~~~ 49 (304)
T PF09468_consen 2 SRVFILPKSASSSSLRIVTLPHPR---TGKPSRYLLDPSNGQLYELNSISE 49 (304)
T ss_dssp EEEEEEECCGCTT-EEEEEEE-TT---TTSEEEEEEETTTTEEEEEEEE--
T ss_pred cEEEEeCCCCCCCcceEEEcCCCC---CCCCcEEEEECCCCEEEEEEeecc
Confidence 5799999998874 566676433 678999999999999999755544
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=25.39 E-value=48 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.561 Sum_probs=19.2
Q ss_pred eeeCC--cchhhhhhceeeeecCCCCCcccCCCCCCC
Q psy13096 66 IYLLP--ECAVQQVCNAVYVRLNYTQPLCACPSRYRE 100 (244)
Q Consensus 66 iylLP--ECa~qqVCnkVd~y~n~tqp~CrCp~~y~~ 100 (244)
+...| +|.+...|-+--+=-.=..+.|.|+.+|..
T Consensus 72 ~~~~p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 72 FWSAPKDQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred EEEecccCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 44444 355444443322222125778999999864
No 5
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=25.13 E-value=36 Score=23.26 Aligned_cols=14 Identities=29% Similarity=0.683 Sum_probs=10.9
Q ss_pred CCCCCcccCCCCCC
Q psy13096 86 NYTQPLCACPSRYR 99 (244)
Q Consensus 86 n~tqp~CrCp~~y~ 99 (244)
|-.+-+|.||.+|+
T Consensus 14 pn~~~~C~CPeGyI 27 (34)
T PF09064_consen 14 PNSPGQCFCPEGYI 27 (34)
T ss_pred CCCCCceeCCCceE
Confidence 33455999999997
No 6
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=24.90 E-value=16 Score=19.87 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=7.2
Q ss_pred cccCCCCCCCC
Q psy13096 91 LCACPSRYREP 101 (244)
Q Consensus 91 ~CrCp~~y~~p 101 (244)
.|.|+.+|.++
T Consensus 1 ~C~C~~G~~G~ 11 (13)
T PF12661_consen 1 TCQCPPGWTGP 11 (13)
T ss_dssp EEEE-TTEETT
T ss_pred CccCcCCCcCC
Confidence 48888888653
No 7
>PF10356 DUF2034: Protein of unknown function (DUF2034); InterPro: IPR018828 This protein is expressed mainly in fungi but its function is unknown.
Probab=21.42 E-value=1.2e+02 Score=26.42 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=29.4
Q ss_pred eEEEEEeecCCCCc-------cccCCCCCCCCcCCCCCceEEEEEeecCCCc
Q psy13096 159 SHYLVICRCPDSSI-------LEGPMSHDQPTYASVPGIRVYGMMCVNRAAS 203 (244)
Q Consensus 159 S~ylViCRCP~~sv-------l~gpmshdqP~yas~pGirVYgm~C~~~~~~ 203 (244)
.--+|-|.+-+..+ |||=++.-.+.. .+-.+.|||||+...+
T Consensus 85 l~VlvQCKa~~~KvgP~~vRELeGt~~~~~~~~---~~~~tigiLvS~~~~T 133 (185)
T PF10356_consen 85 LRVLVQCKAFKKKVGPKLVRELEGTFSRAPPGW---RRNSTIGILVSPRPFT 133 (185)
T ss_pred ceEEEECcCCCCCCChhhhhhhheeeecccCCC---CCCCEEEEEECCCCCC
Confidence 44678898887755 666665544433 3778899999997665
No 8
>PF01686 Adeno_Penton_B: Adenovirus penton base protein; InterPro: IPR002605 This family consists of various adenovirus penton base proteins, from both the mastadenoviridae having mammalian hosts and the aviadenoviridae having avian hosts. The penton base is a major structural protein forming part of the penton which consists of a base and a fibre, the pentons hold a morphologically prominent position at the vertex capsomer in the adenovirus particle []. In mammalian adenovirus there is only one tail on each base where as in avian adenovirus there are two [].; GO: 0005198 structural molecule activity; PDB: 3IZO_D 3IYN_M 1VSZ_N 2C9F_D 2C9G_B 2C6S_I 2BLD_B 1X9P_A 1X9T_A.
Probab=20.67 E-value=65 Score=32.18 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=17.3
Q ss_pred CCCcCCceeeeccCCceEEeccccccccccc
Q psy13096 11 GTSVKPTKYHYYPHNQHIYLLPECAVQQENT 41 (244)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~vqq~~~ 41 (244)
..+.-|.+|-|=--.-.|.|||.|||.=..-
T Consensus 185 T~LVtPG~Yt~kafHPDIvLlPGCaVDFT~S 215 (456)
T PF01686_consen 185 TGLVTPGVYTYKAFHPDIVLLPGCAVDFTYS 215 (456)
T ss_dssp TSCETTSS---SBESSEEEEETT-EEE-TTS
T ss_pred cccccCccccccccCCCEEecCCcccccchh
Confidence 3456677777766666788888888764433
No 9
>PF13323 HPIH: N-terminal domain with HPIH motif
Probab=20.46 E-value=1.2e+02 Score=25.43 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=23.7
Q ss_pred CceEEeccccccccccccCCCCCCCCccCCceeeeccCCCceeeCCc
Q psy13096 25 NQHIYLLPECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPE 71 (244)
Q Consensus 25 ~~~~~~~~~~~vqq~~~~~p~g~~~~~~kPtkyhYyphnqhiylLPE 71 (244)
.||+||++ +..|...+...+.=-.--.+|.|..+|.||+
T Consensus 92 ~~H~aL~t--------l~Fp~~~~~~~~P~~~~v~~~~n~s~~~L~~ 130 (153)
T PF13323_consen 92 ADHYALVT--------LVFPDSNSSSSAPALDNVPIPSNLSAYILPS 130 (153)
T ss_pred cceEEEEE--------EEcCCCCCCCCCCCCCCccccCCCceEEcCC
Confidence 38999974 5666642222222223346788888999886
No 10
>KOG1214|consensus
Probab=19.40 E-value=42 Score=36.63 Aligned_cols=111 Identities=31% Similarity=0.518 Sum_probs=67.4
Q ss_pred eCCcchhh-hhh--ceeeeecCCCCCcccCCCCCCCCCcCCCCCCCCceeEeecCCCCceeeEEecccccccCcccCCCC
Q psy13096 68 LLPECAVQ-QVC--NAVYVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPR 144 (244)
Q Consensus 68 lLPECa~q-qVC--nkVd~y~n~tqp~CrCp~~y~~pCsaSL~~DDgHTi~d~~d~~~kkttl~KtCEPV~~lp~CR~fR 144 (244)
+.-|||.+ -+| |+|-+++| ...+|+|-.+|. -.||+||-.+++++ +..|+||.- +-.|-...
T Consensus 733 d~~eca~~~~~CGp~s~Cin~p-g~~rceC~~gy~-------F~dd~~tCV~i~~p-----ap~n~Ce~g--~h~C~i~g 797 (1289)
T KOG1214|consen 733 DENECATGFHRCGPNSVCINLP-GSYRCECRSGYE-------FADDRHTCVLITPP-----APANPCEDG--SHTCAIAG 797 (1289)
T ss_pred ChhhhccCCCCCCCCceeecCC-CceeEEEeecce-------eccCCcceEEecCC-----CCCCccccC--ccccCcCC
Confidence 33355555 444 23334432 345899988865 57999999998876 678999865 34565544
Q ss_pred cceeeecccccCCceEEEEEeecCCCCccccCCCCC----CCC--------------c--CCCCCceEEEEEeecC
Q psy13096 145 DWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHD----QPT--------------Y--ASVPGIRVYGMMCVNR 200 (244)
Q Consensus 145 DWsLlalqn~rtgkS~ylViCRCP~~svl~gpmshd----qP~--------------y--as~pGirVYgm~C~~~ 200 (244)
-=- =+-.|.+.| +|-|-+++--+|=.--| +|. + .=+||+.==||.|+|.
T Consensus 798 ~a~-----c~~hGgs~y--~C~CLPGfsGDG~~c~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GDGf~CVP~ 866 (1289)
T KOG1214|consen 798 QAR-----CVHHGGSTY--SCACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGDGFQCVPD 866 (1289)
T ss_pred ceE-----EEecCCceE--EEeecCCccCCccccccccccCccccCCCceEecCCCcceeecccCccCCCceecCC
Confidence 322 223566665 68888887665543222 121 0 1356766568889886
Done!