Query psy13096
Match_columns 244
No_of_seqs 26 out of 28
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 19:26:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c9a_A Protein giant-lens; arg 100.0 3.3E-44 1.1E-48 311.3 7.6 128 58-199 15-145 (223)
2 3kio_B Ribonuclease H2 subunit 36.2 22 0.00074 32.1 3.0 45 23-70 35-88 (332)
3 1hy9_A Cocaine and amphetamine 21.0 43 0.0015 22.8 1.6 34 69-107 4-38 (41)
4 3c9a_A Protein giant-lens; arg 18.7 29 0.00099 30.6 0.4 155 18-199 13-215 (223)
5 2ygo_A WIF-1, WNT inhibitory f 17.9 37 0.0013 28.7 0.9 19 86-104 160-180 (188)
6 4ar2_A Penton protein, L2 prot 17.9 74 0.0025 30.8 3.0 38 2-39 223-260 (509)
7 3e50_C Protransforming growth 15.5 46 0.0016 22.4 0.7 14 88-101 28-41 (50)
8 3u7u_G Neuregulin 1; signaling 14.9 47 0.0016 22.4 0.7 38 64-101 3-45 (55)
9 1bus_A Proteinase inhibitor II 13.5 89 0.003 21.3 1.8 25 87-116 10-34 (57)
10 2rnl_A Amphiregulin; AR, color 12.4 50 0.0017 22.1 0.2 13 88-100 32-44 (50)
No 1
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor, developmental protein, glycoprotein, secreted, sensory transduction, vision; 1.60A {Drosophila melanogaster} PDB: 3cgu_A
Probab=100.00 E-value=3.3e-44 Score=311.30 Aligned_cols=128 Identities=27% Similarity=0.567 Sum_probs=120.2
Q ss_pred eeccCCCceeeCCcchhhhhhceeeeec-CCCCCcccCCCCCCCCCcCCCCCCCCceeEeecCCCCceeeEEeccccccc
Q psy13096 58 HYYPHNQHIYLLPECAVQQVCNAVYVRL-NYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLD 136 (244)
Q Consensus 58 hYyphnqhiylLPECa~qqVCnkVd~y~-n~tqp~CrCp~~y~~pCsaSL~~DDgHTi~d~~d~~~kkttl~KtCEPV~~ 136 (244)
.-|+-.++.++|||||++|||||||+|+ ||+|+|||||++ ++||+||..||||||+| |+|++|+|||||+
T Consensus 15 ~lY~~~~Se~dLP~Ca~~~VCn~V~~y~~P~vEr~CRCP~~--~~CP~sl~~dD~hTi~d-------kr~q~K~CePvk~ 85 (223)
T 3c9a_A 15 ILYQVGDSEEDLPVCAPNAVCSKIDLYETPWIERQCRCPDG--RTCPSSLGVEDGHTIAD-------KTRHYKMCQPVHK 85 (223)
T ss_dssp EEESSSSSGGGSCBCCTTBEEEEEECSSSCEEEECCBCSTT--CCCCCCSSSTTSSEEEE-------TTEEEEESSCSTT
T ss_pred EEeecCCchhhccccchhhhhhhhhhhccchhhhhccCcCc--CCCCceeccCCCeeecc-------cceeeeecccccc
Confidence 4567778999999999999999999998 999999999997 99999999999999999 9999999999999
Q ss_pred CcccCCCCc--ceeeecccccCCceEEEEEeecCCCCccccCCCCCCCCcCCCCCceEEEEEeec
Q psy13096 137 MRLCRSPRD--WSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVN 199 (244)
Q Consensus 137 lp~CR~fRD--WsLlalqn~rtgkS~ylViCRCP~~svl~gpmshdqP~yas~pGirVYgm~C~~ 199 (244)
||+||+|+| |||+++ | ..|.++|+||||||++++.+ |..+||.-++++| .+|.|+||+
T Consensus 86 Lp~Cr~f~d~twTL~~~-~-~~Nvt~qiVhCrCp~ns~~~--l~kr~~~~~~~~~-~~~~f~Csp 145 (223)
T 3c9a_A 86 LPVCKHFRDYTWTLTTA-A-ELNVTEQIVHCRCPRNSVTY--LTKREPIGNDSPG-YRYLFACSP 145 (223)
T ss_dssp SCBCCTTTSCCEEEEEE-T-TTTEEEEEECSBCCTTEEEE--EEEEEECCTTCCS-EEEEEEEEE
T ss_pred CcccccCCCcceEeeec-c-CCcceEEEEEEeCCCCCeEE--EEEcccccCCCcc-EEEEEEecc
Confidence 999999999 999997 3 35788899999999999987 9999999999999 669999999
No 2
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_B 3puf_B 3p56_B
Probab=36.23 E-value=22 Score=32.13 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=33.4
Q ss_pred cCCceEEecccccccc---------ccccCCCCCCCCccCCceeeeccCCCceeeCC
Q psy13096 23 PHNQHIYLLPECAVQQ---------ENTRTPGGAAGTSVKPTKYHYYPHNQHIYLLP 70 (244)
Q Consensus 23 ~~~~~~~~~~~~~vqq---------~~~~~p~g~~~~~~kPtkyhYyphnqhiylLP 70 (244)
.-++.|++|||.+.-. ..+.||-=.+ .+|+.|=+.+.++.||||=
T Consensus 35 ~~~~~v~ilp~~~~~~~~~~~~~~l~~v~LphPrt---g~~~~YL~~~~~~~lyEl~ 88 (332)
T 3kio_B 35 AARQLVFLLPEHLKDASKKKKKSSLLFVKLANPHS---GEGATYLIDMCLQQLFEIK 88 (332)
T ss_dssp CCCEEEEEEEGGGGC-----CCCCEEEEEECCTTT---TCCEEEEEESSSCCCEEEE
T ss_pred CCCcEEEEEChhhhccccccccCCceEEECCCCCC---CCCceEEEeCCCCcEEEEe
Confidence 5688999999999732 3356665444 5899999988888899853
No 3
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=21.00 E-value=43 Score=22.85 Aligned_cols=34 Identities=29% Similarity=0.710 Sum_probs=26.4
Q ss_pred CCcchhhhhhceeeee-cCCCCCcccCCCCCCCCCcCCCC
Q psy13096 69 LPECAVQQVCNAVYVR-LNYTQPLCACPSRYREPCSASIN 107 (244)
Q Consensus 69 LPECa~qqVCnkVd~y-~n~tqp~CrCp~~y~~pCsaSL~ 107 (244)
+|-|..-+-|- || ++-+..+|.||.+ ..|...|-
T Consensus 4 ~P~Cd~GeqCA---vRkG~RigklC~C~rg--~~Cn~fll 38 (41)
T 1hy9_A 4 VPMCDAGEQCA---VRKGARIGKLCDCPRG--TSCNSFLL 38 (41)
T ss_dssp CCBCCSSSCSE---EECSSSEEECCBCCTT--CCBCTTTC
T ss_pred CCcCCccchhh---hhcccccchhcCCCCC--Ccchhhhe
Confidence 68888877773 45 4778889999998 88887763
No 4
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor, developmental protein, glycoprotein, secreted, sensory transduction, vision; 1.60A {Drosophila melanogaster} PDB: 3cgu_A
Probab=18.66 E-value=29 Score=30.58 Aligned_cols=155 Identities=22% Similarity=0.379 Sum_probs=81.7
Q ss_pred eeeeccCCceEEeccccccccccc--------------cCCCCCCCCccCCceeeeccC------C------CceeeCCc
Q psy13096 18 KYHYYPHNQHIYLLPECAVQQENT--------------RTPGGAAGTSVKPTKYHYYPH------N------QHIYLLPE 71 (244)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~vqq~~~--------------~~p~g~~~~~~kPtkyhYyph------n------qhiylLPE 71 (244)
--+-||=...=++|||||.|||=- +-|.|-+ =|-+++=-++ + +.+.+||+
T Consensus 13 ~~~lY~~~~Se~dLP~Ca~~~VCn~V~~y~~P~vEr~CRCP~~~~----CP~sl~~dD~hTi~dkr~q~K~CePvk~Lp~ 88 (223)
T 3c9a_A 13 VRILYQVGDSEEDLPVCAPNAVCSKIDLYETPWIERQCRCPDGRT----CPSSLGVEDGHTIADKTRHYKMCQPVHKLPV 88 (223)
T ss_dssp CEEEESSSSSGGGSCBCCTTBEEEEEECSSSCEEEECCBCSTTCC----CCCCSSSTTSSEEEETTEEEEESSCSTTSCB
T ss_pred ceEEeecCCchhhccccchhhhhhhhhhhccchhhhhccCcCcCC----CCceeccCCCeeecccceeeeeccccccCcc
Confidence 345677777778999999998731 2233321 1222221111 1 55677999
Q ss_pred ch--hhhhhceeeeec--CCCC--CcccCCCCCCCCCcCCCC--CCCCceeEeecCCCCceeeEEecccccccCc-----
Q psy13096 72 CA--VQQVCNAVYVRL--NYTQ--PLCACPSRYREPCSASIN--SDDFHTTELTTDPQGKVLTLVKTCEPVLDMR----- 138 (244)
Q Consensus 72 Ca--~qqVCnkVd~y~--n~tq--p~CrCp~~y~~pCsaSL~--~DDgHTi~d~~d~~~kkttl~KtCEPV~~lp----- 138 (244)
|. .-+.= ..+.+. |=+. -.|+||.. .-.=-..-. .+.+.|. +..=.|-|.++||
T Consensus 89 Cr~f~d~tw-TL~~~~~~Nvt~qiVhCrCp~n-s~~~l~kr~~~~~~~~~~-----------~~~f~Cspl~R~rCq~ke 155 (223)
T 3c9a_A 89 CKHFRDYTW-TLTTAAELNVTEQIVHCRCPRN-SVTYLTKREPIGNDSPGY-----------RYLFACSPLTRLRCQRKQ 155 (223)
T ss_dssp CCTTTSCCE-EEEEETTTTEEEEEECSBCCTT-EEEEEEEEEECCTTCCSE-----------EEEEEEEECCCCBCCTTC
T ss_pred cccCCCcce-EeeeccCCcceEEEEEEeCCCC-CeEEEEEcccccCCCccE-----------EEEEEecchhhcccCCCC
Confidence 99 22211 222221 3232 17999876 000000001 1222222 2334799999976
Q ss_pred ccCCCCc---ceeeecccccCCceEEEEEeecCCCCccccCCCCCCC------CcCCCCCceEEEEEeec
Q psy13096 139 LCRSPRD---WSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQP------TYASVPGIRVYGMMCVN 199 (244)
Q Consensus 139 ~CR~fRD---WsLlalqn~rtgkS~ylViCRCP~~svl~gpmshdqP------~yas~pGirVYgm~C~~ 199 (244)
-|++|+- =+.+-..| ---.|-||.++.- |.-|++| .|++ ..|+-|.--|+.
T Consensus 156 ~C~l~tvrkr~~~~De~n-------i~~~CqCP~gH~C--~~~h~~~g~~~~~~~~~-~~i~tysgyc~~ 215 (223)
T 3c9a_A 156 PCKLFTVRKRQEFLDEVN-------INSLCQCPKGHRC--PSHHTQSGVIAGESFLE-DNIQTYSGYCMA 215 (223)
T ss_dssp EEEEEEEEEEETTEEEEE-------EEECCBCCTTEEC--CSSTTSTTEEEEEECSS-TTEEEEEEECEE
T ss_pred CccceEeeccccccceee-------eeeeecCCCcCcC--CcccCCCCccchhhhhh-hhhheeeeeEec
Confidence 4666652 11111111 1124999999975 6888888 3444 556777766664
No 5
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=17.88 E-value=37 Score=28.71 Aligned_cols=19 Identities=26% Similarity=0.969 Sum_probs=13.7
Q ss_pred CCCCC-cccCCCCCCCC-CcC
Q psy13096 86 NYTQP-LCACPSRYREP-CSA 104 (244)
Q Consensus 86 n~tqp-~CrCp~~y~~p-Csa 104 (244)
..+.| +|.||++|.++ |+.
T Consensus 160 ~Cv~P~~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 160 FCNERRICECPDGFHGPHCEG 180 (188)
T ss_dssp EECTTSCEECCTTCBTTTTCB
T ss_pred EeCCCCcccCcCCCCCCCCcC
Confidence 33555 89999999875 544
No 6
>4ar2_A Penton protein, L2 protein III (penton base); viral protein, capsid protein, dsDNA virus, dodecahedron, VI particle, strand swapping; 3.80A {Human adenovirus 3} PDB: 4aqq_A
Probab=17.86 E-value=74 Score=30.80 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=24.3
Q ss_pred CccCCCCCCCCCcCCceeeeccCCceEEeccccccccc
Q psy13096 2 NTRTPGGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQE 39 (244)
Q Consensus 2 ~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vqq~ 39 (244)
|.||=-.--..+.-|.+|-|=--.-.|.|||.|||.=.
T Consensus 223 nf~Lg~DPvT~LV~PG~Yt~~afHPDIvLlPGCaVDFT 260 (509)
T 4ar2_A 223 NFRLGWDPETKLIMPGVYTYEAFHPDIVLLPGCGVDFT 260 (509)
T ss_dssp CTTTTCCTTTCSCTTSSCCCCCCSCCEEECSSCEEECT
T ss_pred ccccCCCCccccccCccccccccCCCEEecCCceeccc
Confidence 34443333445667778877666667888888887543
No 7
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=15.53 E-value=46 Score=22.42 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=11.8
Q ss_pred CCCcccCCCCCCCC
Q psy13096 88 TQPLCACPSRYREP 101 (244)
Q Consensus 88 tqp~CrCp~~y~~p 101 (244)
.++.|+|+.+|.+.
T Consensus 28 ~~~~C~C~~gy~G~ 41 (50)
T 3e50_C 28 DKPACVCHSGYVGA 41 (50)
T ss_pred CCeEEECCCCCccc
Confidence 57899999999864
No 8
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=14.94 E-value=47 Score=22.38 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=23.4
Q ss_pred CceeeCCcchhh-----hhhceeeeecCCCCCcccCCCCCCCC
Q psy13096 64 QHIYLLPECAVQ-----QVCNAVYVRLNYTQPLCACPSRYREP 101 (244)
Q Consensus 64 qhiylLPECa~q-----qVCnkVd~y~n~tqp~CrCp~~y~~p 101 (244)
.++..+.||+.. ..|..+..-..+..-.|.||.+|.+.
T Consensus 3 ~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~ 45 (55)
T 3u7u_G 3 SHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD 45 (55)
T ss_dssp CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEEST
T ss_pred CCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCC
Confidence 456677887654 67754221112345589999998764
No 9
>1bus_A Proteinase inhibitor IIA; HET: PCA; NMR {Bos taurus} SCOP: g.68.1.1 PDB: 2bus_A*
Probab=13.54 E-value=89 Score=21.25 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=18.5
Q ss_pred CCCCcccCCCCCCCCCcCCCCCCCCceeEe
Q psy13096 87 YTQPLCACPSRYREPCSASINSDDFHTTEL 116 (244)
Q Consensus 87 ~tqp~CrCp~~y~~pCsaSL~~DDgHTi~d 116 (244)
|.++.|.|+..|..=|-+ ||.|-.-
T Consensus 10 ~~~~~~~C~~~~~PVCGs-----DG~TY~n 34 (57)
T 1bus_A 10 FKDPKVYCTRESNPHCGS-----NGETYGN 34 (57)
T ss_dssp TCTTTTSCSSCSCCEEBS-----SSCEECC
T ss_pred CCCCCCcCCCCCCCcCCC-----CCCeeCC
Confidence 346899999988877854 7777544
No 10
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=12.43 E-value=50 Score=22.11 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=11.1
Q ss_pred CCCcccCCCCCCC
Q psy13096 88 TQPLCACPSRYRE 100 (244)
Q Consensus 88 tqp~CrCp~~y~~ 100 (244)
.++.|+|+.+|.+
T Consensus 32 ~~~~C~C~~gy~G 44 (50)
T 2rnl_A 32 EAVTCKCQQEYFG 44 (50)
T ss_dssp TEEEEECCSSCCS
T ss_pred CCeeEECCCCccc
Confidence 4779999999976
Done!