Query psy13096
Match_columns 244
No_of_seqs 26 out of 28
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 19:26:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13096.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13096hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dx5i2 g.3.11.1 (I:388-422) T 28.5 7.3 0.00053 24.3 0.5 11 164-174 19-29 (35)
2 d2uyzb1 d.15.1.1 (B:20-96) SUM 16.4 17 0.0013 23.4 0.5 22 101-122 56-77 (77)
3 d1mxaa2 d.130.1.1 (A:108-231) 16.3 26 0.0019 25.6 1.5 18 183-201 7-24 (124)
4 d2p02a2 d.130.1.1 (A:148-273) 15.6 27 0.002 25.5 1.4 16 184-200 6-21 (126)
5 d1ioxa_ g.3.11.1 (A:) Betacell 14.2 18 0.0013 22.9 0.1 16 86-101 26-41 (50)
6 d1moxc_ g.3.11.1 (C:) Transfor 13.3 14 0.001 23.4 -0.7 16 86-101 25-40 (49)
7 d3egfa_ g.3.11.1 (A:) Epiderma 12.9 25 0.0018 22.1 0.5 27 72-101 14-40 (53)
8 d1euvb_ d.15.1.1 (B:) SUMO-1 ( 12.0 62 0.0045 20.5 2.3 22 100-121 56-77 (79)
9 d1rhya1 d.14.1.9 (A:2-93) Imid 11.6 14 0.001 26.6 -1.2 17 102-118 61-77 (92)
10 d3bpse1 g.3.11.1 (E:293-332) L 10.9 72 0.0053 18.9 2.2 28 71-99 4-32 (40)
No 1
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.53 E-value=7.3 Score=24.30 Aligned_cols=11 Identities=45% Similarity=1.244 Sum_probs=9.6
Q ss_pred EeecCCCCccc
Q psy13096 164 ICRCPDSSILE 174 (244)
Q Consensus 164 iCRCP~~svl~ 174 (244)
.|.||+|+||+
T Consensus 19 ~C~CPeGyIld 29 (35)
T d1dx5i2 19 SCECPEGYILD 29 (35)
T ss_dssp CEECCTTEEEE
T ss_pred cccCCCceEec
Confidence 59999999975
No 2
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.38 E-value=17 Score=23.37 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=17.7
Q ss_pred CCcCCCCCCCCceeEeecCCCC
Q psy13096 101 PCSASINSDDFHTTELTTDPQG 122 (244)
Q Consensus 101 pCsaSL~~DDgHTi~d~~d~~~ 122 (244)
--+++|+-+||++|..+..+.|
T Consensus 56 ~T~~~l~~edgD~Idv~~~q~G 77 (77)
T d2uyzb1 56 HTPKELGMEEEDVIEVYQEQTG 77 (77)
T ss_dssp CCHHHHTCCTTEEEEEEECCCC
T ss_pred CCHHHcCCCCCCEEEEEEecCC
Confidence 3678899999999999766544
No 3
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=16.34 E-value=26 Score=25.57 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=14.2
Q ss_pred CcCCCCCceEEEEEeecCC
Q psy13096 183 TYASVPGIRVYGMMCVNRA 201 (244)
Q Consensus 183 ~yas~pGirVYgm~C~~~~ 201 (244)
..||-+||- ||+||.-..
T Consensus 7 ~GAGDQGim-fGYA~~ET~ 24 (124)
T d1mxaa2 7 QGAGDQGLM-FGYATNETD 24 (124)
T ss_dssp CCCSSCEEE-EEEEETTST
T ss_pred cCCCcceEe-eeEEcCCcc
Confidence 367999964 999998743
No 4
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=15.64 E-value=27 Score=25.52 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.3
Q ss_pred cCCCCCceEEEEEeecC
Q psy13096 184 YASVPGIRVYGMMCVNR 200 (244)
Q Consensus 184 yas~pGirVYgm~C~~~ 200 (244)
.||-+||- ||+||.--
T Consensus 6 GAGDQGim-fGYA~~ET 21 (126)
T d2p02a2 6 GAGDQGLM-FGYATDET 21 (126)
T ss_dssp CBSSCEEE-EEEEETTS
T ss_pred CCCcceee-eeeEcCCC
Confidence 57999965 99999873
No 5
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.25 E-value=18 Score=22.92 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=13.0
Q ss_pred CCCCCcccCCCCCCCC
Q psy13096 86 NYTQPLCACPSRYREP 101 (244)
Q Consensus 86 n~tqp~CrCp~~y~~p 101 (244)
+..++.|+|+.+|.+.
T Consensus 26 ~~~~~~C~C~~gy~G~ 41 (50)
T d1ioxa_ 26 AEQTPSCVCDEGYIGA 41 (50)
T ss_dssp TTTEEEECCCTTEETT
T ss_pred CCCCcEeECCCCCeeC
Confidence 5667899999998763
No 6
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.27 E-value=14 Score=23.44 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=13.1
Q ss_pred CCCCCcccCCCCCCCC
Q psy13096 86 NYTQPLCACPSRYREP 101 (244)
Q Consensus 86 n~tqp~CrCp~~y~~p 101 (244)
+..++.|+|+.+|.+.
T Consensus 25 ~~~~~~C~C~~gy~G~ 40 (49)
T d1moxc_ 25 QEDKPACVCHSGYVGA 40 (49)
T ss_dssp TTTEEEEEECTTEEST
T ss_pred CCCCcEeECCCCCEec
Confidence 6678899999998763
No 7
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.86 E-value=25 Score=22.08 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=17.3
Q ss_pred chhhhhhceeeeecCCCCCcccCCCCCCCC
Q psy13096 72 CAVQQVCNAVYVRLNYTQPLCACPSRYREP 101 (244)
Q Consensus 72 Ca~qqVCnkVd~y~n~tqp~CrCp~~y~~p 101 (244)
|....+|.-+. ...+..|.||.+|.+.
T Consensus 14 C~NgG~C~~~~---~~~~~~C~C~~gy~G~ 40 (53)
T d3egfa_ 14 CLNGGVCMHIE---SLDSYTCNCVIGYSGD 40 (53)
T ss_dssp SCSSCEEEEES---SSSCEEEECCTTCCSS
T ss_pred CCCCcEeeccC---CCCCeEeECCCCCcCC
Confidence 33345564322 4467899999999764
No 8
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Probab=12.01 E-value=62 Score=20.54 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=17.9
Q ss_pred CCCcCCCCCCCCceeEeecCCC
Q psy13096 100 EPCSASINSDDFHTTELTTDPQ 121 (244)
Q Consensus 100 ~pCsaSL~~DDgHTi~d~~d~~ 121 (244)
.-.+++++-.||.||..+..+.
T Consensus 56 ~~T~~~~~i~dgd~I~v~~~q~ 77 (79)
T d1euvb_ 56 DQTPEDLDMEDNDIIEAHREQI 77 (79)
T ss_dssp TCCTTTTTCCTTEEEEEEECCB
T ss_pred CCCHHHCCCCCCCEEEEEEecc
Confidence 4578999999999999966554
No 9
>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase {Fungus (Filobasidiella neoformans) [TaxId: 5207]}
Probab=11.58 E-value=14 Score=26.59 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=7.9
Q ss_pred CcCCCCCCCCceeEeec
Q psy13096 102 CSASINSDDFHTTELTT 118 (244)
Q Consensus 102 CsaSL~~DDgHTi~d~~ 118 (244)
|.-.|..||=||+||+.
T Consensus 61 a~GDl~vD~HHtvEDvg 77 (92)
T d1rhya1 61 CKGDLHIDDHHTAEDCA 77 (92)
T ss_dssp EESCC------CCHHHH
T ss_pred EEeccccccchhhHHHH
Confidence 45568999999999953
No 10
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.95 E-value=72 Score=18.88 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=17.5
Q ss_pred cchhh-hhhceeeeecCCCCCcccCCCCCC
Q psy13096 71 ECAVQ-QVCNAVYVRLNYTQPLCACPSRYR 99 (244)
Q Consensus 71 ECa~q-qVCnkVd~y~n~tqp~CrCp~~y~ 99 (244)
||+.. ..|+-.=+-.+ ..-.|.|+.+|+
T Consensus 4 eC~~~nggC~h~C~n~~-g~~~C~C~~Gy~ 32 (40)
T d3bpse1 4 ECLDNNGGCSHVCNDLK-IGYECLCPDGFQ 32 (40)
T ss_dssp GGGTGGGGCSSEEEECS-SSEEEECCTTCC
T ss_pred cCCCCCCCCcCEEEcCC-CCEEEECCCCCE
Confidence 67665 55554433322 345899999985
Done!