RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13096
(244 letters)
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 31.7 bits (73), Expect = 0.34
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 188 PGIRVYGMMCVNRAASVVSTTASVYHTSSTT--------YRTPTPSKRKSRPLRLSR 236
PG+ + + A+++ST S+ +ST P S +K LR+ R
Sbjct: 307 PGLAGLVLAGL--LAAIMSTADSLLLAASTLFTRDIYKRLINPKASDKKL--LRVGR 359
>gnl|CDD|119307 pfam10787, YfmQ, Uncharacterized protein from bacillus cereus
group. This family is conserved in the Bacillus cereus
group. Several members are called YfmQ but the function
is not known.
Length = 149
Score = 29.8 bits (67), Expect = 0.65
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 18 KYHYYPHNQHIYLLPECAVQQENTRTPGGAAGTSVKPTKYHYYPHNQHI 66
KY+ YP ++ ++L PE T G K + Y ++ H+
Sbjct: 74 KYYIYPGDEELFLHPENGGTPLVINTKKGK-----KDVTFFIYRYDDHV 117
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 29.2 bits (65), Expect = 2.1
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 142 SPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHD----QPTYASVPGIRVYGMMC 197
S RDW + T + +Y + +G +H Q +Y +PG++ Y
Sbjct: 35 SSRDWIGIFKVGWLTVRDYYTFVWALAPEGYQKGSDAHCSVQFQASYLPIPGVQEYQFRY 94
Query: 198 VNRAASVVSTTASVYHTSSTTYRTPTP 224
V+ V +S T+ P P
Sbjct: 95 VDGRGDVCGI------SSQFTFAEPRP 115
>gnl|CDD|149877 pfam08943, CsiD, CsiD. This family consists of various bacterial
proteins pertaining to the non-haem Fe(II)-dependent
oxygenase family. Exact function is unknown, but a
putative role includes involvement in the control of
utilisation of gamma-aminobutyric acid.
Length = 297
Score = 28.1 bits (63), Expect = 4.8
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 87 YTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGK 123
Y PL P ++ P S +++ D H D G+
Sbjct: 184 YNHPLAKRPMVWKAPPSKNVSYDVEHPVFFEEDDNGR 220
>gnl|CDD|225781 COG3241, COG3241, Azurin [Energy production and conversion].
Length = 151
Score = 27.2 bits (60), Expect = 4.9
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 91 LCACPSRYREPCSASINSDD---FHTTELTTDPQGKVLTL 127
L A P+ E C+ +I S+D F+T ++ K T+
Sbjct: 14 LEAAPALAAEACAVTIESNDQMQFNTNDIQVSKACKEFTI 53
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex
of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 27.3 bits (61), Expect = 7.5
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 15/52 (28%)
Query: 25 NQHIYLLPECA-------VQQENTRTPGGAAGTSVKPTKYHYYPHNQHIYLL 69
+++LP+ A V + RT KP +Y + P N +Y L
Sbjct: 1 PSKVFILPKSASLESLRIVTLPHPRTG--------KPARYLFCPKNGQLYEL 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.410
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,572,307
Number of extensions: 980731
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 8
Length of query: 244
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 150
Effective length of database: 6,768,326
Effective search space: 1015248900
Effective search space used: 1015248900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)