RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13096
(244 letters)
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor,
developmental protein, glycoprotein, secreted, sensory
transduction, vision; 1.60A {Drosophila melanogaster}
PDB: 3cgu_A
Length = 223
Score = 125 bits (315), Expect = 1e-35
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 21/134 (15%)
Query: 69 LPECAVQQVCNAV-YVRLNYTQPLCACPSRYREPCSASINSDDFHTTELTTDPQGKVLTL 127
LP CA VC+ + + + C CP C +S+ +D HT T
Sbjct: 26 LPVCAPNAVCSKIDLYETPWIERQCRCPDG--RTCPSSLGVEDGHTIADKT-------RH 76
Query: 128 VKTCEPVLDMRLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSIL----EGPMSHDQPT 183
K C+PV + +C+ RD++ + +V CRCP +S+ P+ +D P
Sbjct: 77 YKMCQPVHKLPVCKHFRDYTWTLTTAAELNVTEQIVHCRCPRNSVTYLTKREPIGNDSPG 136
Query: 184 YASVPGIRVYGMMC 197
Y Y C
Sbjct: 137 Y-------RYLFAC 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 3e-04
Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 87/236 (36%)
Query: 22 YPHNQHIYLLPECAVQQENTRTPGGAA------GTSVKPTKYH------YYPHNQHIYL- 68
YP+ LP ++ G + + + + + + P + + +
Sbjct: 314 YPN----TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 69 L---PECAVQQVC---NAVYVRLN------------------YTQ----------PLCAC 94
L + V V ++Y LN +++ P+ A
Sbjct: 370 LVNGAKNLV--VSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-AS 425
Query: 95 P--SRYREPCSASINSD------DFHTTEL------TTDPQGKVLTLVKTC--EPVLDMR 138
P S P S IN D F+ ++ T D G L ++ E ++D
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--GSDLRVLSGSISERIVDC- 482
Query: 139 LCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHD--QPTYASVPGIRV 192
+ R P W + +H ++ P + G ++H T G+RV
Sbjct: 483 IIRLPVKWETTT----QFKATH--ILDFGPGGASGLGVLTHRNKDGT-----GVRV 527
Score = 39.3 bits (91), Expect = 0.001
Identities = 38/224 (16%), Positives = 61/224 (27%), Gaps = 68/224 (30%)
Query: 35 AVQQENTRTP---GGAAGTSVKPTKYHYYPHNQHIYLLPECAVQQVCNAVYVRLNYTQPL 91
AV + N + GG G + Y+ + +Y V + L L
Sbjct: 148 AVGEGNAQLVAIFGGQ-GNTDD-----YFEELRDLYQTYHVLVGDLIKFSAETL---SEL 198
Query: 92 CACPSRYREPCSASINSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSLLAL 151
+ + +N ++ L +P P D L P L+ +
Sbjct: 199 IRTTLDAEKVFTQGLNILEW----LE-NPSNT---------PDKDY-LLSIPISCPLIGV 243
Query: 152 QNIRTGKSHYLVICRC----PDS--SILEGPMSHDQPTYASVP----------------- 188
+HY+V + P S L+G H Q +V
Sbjct: 244 ----IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 189 -------GIRVYGMMCVNRAASVVSTTASVYHTSSTTYR-TPTP 224
G+R Y A S S+ S P+P
Sbjct: 300 ITVLFFIGVRCY------EAYPNTSLPPSILEDSLENNEGVPSP 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.21
Identities = 20/161 (12%), Positives = 35/161 (21%), Gaps = 61/161 (37%)
Query: 61 PHN-QHIYLLPECAVQQVCNAVYV------RLNYTQPLCACPSRYREPCSASINSDDFHT 113
L + + V R+NY + + R+P S+ + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIE 114
Query: 114 T--ELTTDPQGKVLTLVKTCEPVLDMRLCRSPRDWSL-LALQNIRTGKSHYLVICRCPDS 170
L D Q + R L AL +R
Sbjct: 115 QRDRLYNDNQ-----------VFAKYNVSRLQPYLKLRQALLELR--------------- 148
Query: 171 SILEGPMSHDQPTYASVPGIRVYGMM-----CVNRAASVVS 206
+ + G++ V A V
Sbjct: 149 ---------------PAKNVLIDGVLGSGKTWV--ALDVCL 172
Score = 31.4 bits (70), Expect = 0.30
Identities = 24/196 (12%), Positives = 49/196 (25%), Gaps = 60/196 (30%)
Query: 16 PTKYHYYPHNQHIYLLPECAVQQ-------ENTRTPGGAAGTSVKPTK-----YHYYPHN 63
P + + ++ L + + ++ P + P Y + H
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH- 479
Query: 64 QHIYLLPECAVQQVCNAVYV-------RLNYTQPLCACPS----------RYREPCSASI 106
H+ + + V++ ++ + Y+ I
Sbjct: 480 -HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP----YI 534
Query: 107 NSDDFHTTELTTDPQGKVLTLVKTCEPVLDMRLCRSP-RDWSLLALQNIRTGKSHYLVIC 165
+D L +L + E L S D +AL
Sbjct: 535 CDNDPKYERLVNA----ILDFLPKIEEN----LICSKYTDLLRIALMA------------ 574
Query: 166 RCPDSSILEGPMSHDQ 181
D +I E +H Q
Sbjct: 575 --EDEAIFE--EAHKQ 586
>2f46_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria
meningitidis Z2491}
Length = 156
Score = 28.4 bits (63), Expect = 1.2
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 142 SPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQPTYASVPGIRVYGMMCVNRA 201
+ D +A I+T +IC PD P + G+ + V
Sbjct: 31 TKADAEQIAQLGIKT------IICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTAR 84
Query: 202 A 202
Sbjct: 85 D 85
>1f8v_A Mature capsid protein beta; nodavirus, coat protein, nucleoprotein,
protein-RNA interactions, RNA duplex, RNA CAGE, gamma
polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Length = 355
Score = 27.9 bits (61), Expect = 3.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 199 NRAASVVSTTASVYHTSSTTYRT-PTPSKRKSRPLRLSRSVRVS 241
N+A VVS + ++ + + RT P P K + R L R+ R++
Sbjct: 4 NKARKVVSRSTALVPMAPASQRTGPAPRKPRKRNQALVRNPRLT 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.410
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,530,026
Number of extensions: 187432
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 10
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)