RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13096
         (244 letters)



>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto
           virus [TaxId: 103782]}
          Length = 395

 Score = 30.0 bits (67), Expect = 0.25
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 199 NRAASVVSTTASVYHTSSTTYRT-PTPSKRKSRPLRLSRSVRVS 241
           N+A  VVS + ++   +  + RT P P K + R   L R+ R++
Sbjct: 4   NKARKVVSRSTALVPMAPASQRTGPAPRKPRKRNQALVRNPRLT 47


>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 137

 Score = 25.2 bits (55), Expect = 4.7
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 138 RLCRSPRDWSLLALQNIRTGKSHYLVICRCPDSSILEGPMSHDQ 181
           +     R  +   +  ++ G   Y  +    D   LE   S +Q
Sbjct: 52  QRRVLSRALTRQQVHALQDGAELYAAVQDASDPEHLETCFSEEQ 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.410 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 883,662
Number of extensions: 37971
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)