Query psy13097
Match_columns 123
No_of_seqs 220 out of 1213
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:27:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0467|consensus 100.0 2.2E-44 4.8E-49 313.9 4.3 122 1-122 766-887 (887)
2 KOG0469|consensus 100.0 9.1E-29 2E-33 210.7 6.1 101 1-119 742-842 (842)
3 PTZ00416 elongation factor 2; 99.9 1.8E-28 3.8E-33 218.7 6.1 100 1-121 736-835 (836)
4 PLN00116 translation elongatio 99.9 5.2E-28 1.1E-32 215.8 6.8 101 1-119 743-843 (843)
5 KOG0468|consensus 99.9 1.8E-28 3.9E-33 213.0 2.1 109 2-114 845-953 (971)
6 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 1.5E-23 3.2E-28 139.3 5.1 64 1-64 17-80 (80)
7 TIGR00490 aEF-2 translation el 99.9 3.8E-23 8.3E-28 182.0 6.0 82 1-106 639-720 (720)
8 PRK07560 elongation factor EF- 99.9 1.4E-22 3E-27 178.6 6.1 88 1-114 641-728 (731)
9 COG0480 FusA Translation elong 99.9 8.9E-22 1.9E-26 173.2 6.9 81 1-103 617-697 (697)
10 cd04096 eEF2_snRNP_like_C eEF2 99.8 1.1E-19 2.3E-24 119.9 5.2 64 1-64 17-80 (80)
11 smart00838 EFG_C Elongation fa 99.8 1.8E-19 3.9E-24 120.1 4.0 64 2-67 20-83 (85)
12 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 2.4E-19 5.2E-24 117.9 4.3 62 1-64 17-78 (78)
13 cd03711 Tet_C Tet_C: C-terminu 99.8 2.9E-19 6.4E-24 117.5 4.0 62 1-64 17-78 (78)
14 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 3E-19 6.5E-24 117.1 3.8 62 1-64 17-78 (78)
15 cd01514 Elongation_Factor_C El 99.7 1.5E-18 3.2E-23 113.9 4.4 63 1-64 17-79 (79)
16 PF00679 EFG_C: Elongation fac 99.7 5.4E-19 1.2E-23 119.0 2.3 67 1-68 20-86 (89)
17 cd03710 BipA_TypA_C BipA_TypA_ 99.7 6.5E-18 1.4E-22 111.6 4.1 62 1-63 17-78 (79)
18 cd03709 lepA_C lepA_C: This fa 99.7 1.1E-16 2.4E-21 106.1 4.7 61 2-63 18-79 (80)
19 PRK12739 elongation factor G; 99.6 1.2E-16 2.7E-21 140.2 4.8 64 1-66 616-679 (691)
20 TIGR00484 EF-G translation elo 99.6 1.7E-16 3.6E-21 139.3 4.9 65 1-67 616-680 (689)
21 PRK13351 elongation factor G; 99.6 1.2E-16 2.7E-21 139.7 3.4 67 1-68 615-681 (687)
22 PRK00007 elongation factor G; 99.6 4.9E-16 1.1E-20 136.6 4.8 64 1-66 619-682 (693)
23 PRK12740 elongation factor G; 99.6 4.1E-16 8.8E-21 135.9 3.2 66 1-68 598-663 (668)
24 KOG0465|consensus 99.5 2.7E-14 5.8E-19 124.0 4.2 63 2-66 650-712 (721)
25 TIGR01394 TypA_BipA GTP-bindin 99.4 2.5E-13 5.4E-18 118.2 5.0 64 2-66 411-474 (594)
26 PRK10218 GTP-binding protein; 99.4 3.5E-13 7.5E-18 117.6 5.1 64 2-66 415-479 (607)
27 PRK05433 GTP-binding protein L 99.3 2.5E-12 5.4E-17 112.0 4.6 88 2-98 421-519 (600)
28 TIGR01393 lepA GTP-binding pro 99.3 3E-12 6.6E-17 111.4 4.4 89 2-98 417-516 (595)
29 KOG0464|consensus 98.7 9.9E-09 2.1E-13 87.5 3.4 64 2-65 676-739 (753)
30 KOG0462|consensus 97.7 3.5E-05 7.6E-10 67.4 3.9 59 2-61 473-532 (650)
31 COG1217 TypA Predicted membran 97.0 0.00021 4.5E-09 61.9 0.6 64 2-66 415-478 (603)
32 COG0481 LepA Membrane GTPase L 95.8 0.012 2.7E-07 51.3 4.1 61 2-63 423-484 (603)
33 PF09186 DUF1949: Domain of un 88.4 0.54 1.2E-05 27.8 2.6 45 3-50 12-56 (56)
34 PF14091 DUF4269: Domain of un 53.3 53 0.0012 24.4 5.7 96 2-108 9-134 (152)
35 TIGR00257 IMPACT_YIGZ uncharac 45.1 32 0.0007 26.6 3.6 48 3-53 152-199 (204)
36 PRK13760 putative RNA-associat 36.3 28 0.00061 27.6 2.1 51 2-54 178-228 (231)
37 PRK11568 hypothetical protein; 36.3 45 0.00097 25.8 3.2 48 3-53 152-199 (204)
38 PF07537 CamS: CamS sex pherom 34.2 17 0.00037 30.0 0.6 38 70-113 135-172 (319)
39 KOG3583|consensus 32.5 31 0.00067 27.6 1.8 43 26-72 71-113 (279)
40 COG1509 KamA Lysine 2,3-aminom 31.9 54 0.0012 27.8 3.2 39 17-59 290-328 (369)
41 PF07368 DUF1487: Protein of u 31.4 51 0.0011 25.9 2.8 35 86-121 42-76 (215)
42 COG2176 PolC DNA polymerase II 31.1 45 0.00097 32.7 2.8 32 85-123 1223-1254(1444)
43 PLN02390 molybdopterin synthas 30.3 36 0.00078 23.8 1.7 39 43-103 14-52 (111)
44 KOG2204|consensus 30.2 22 0.00049 31.8 0.7 47 22-68 304-350 (625)
45 COG4851 CamS Protein involved 30.2 38 0.00083 28.4 2.0 50 61-116 185-235 (382)
46 PF02391 MoaE: MoaE protein; 30.1 49 0.0011 23.0 2.3 40 43-104 33-72 (117)
47 PRK04358 hypothetical protein; 28.9 35 0.00077 26.8 1.6 28 86-113 93-122 (217)
48 cd02164 PPAT_CoAS phosphopante 27.6 40 0.00086 24.4 1.5 48 59-107 71-119 (143)
49 PRK00194 hypothetical protein; 26.2 41 0.00088 21.6 1.3 57 2-59 20-80 (90)
50 cd00756 MoaE MoaE family. Memb 23.2 62 0.0013 22.9 1.8 40 43-104 25-64 (124)
51 KOG4710|consensus 22.9 31 0.00066 26.0 0.2 34 41-74 14-47 (170)
52 PRK10678 moaE molybdopterin gu 22.0 69 0.0015 23.6 1.9 42 40-103 35-76 (150)
53 PF04552 Sigma54_DBD: Sigma-54 21.4 76 0.0016 23.5 2.1 34 71-105 121-154 (160)
54 cd04875 ACT_F4HF-DF N-terminal 20.7 1.1E+02 0.0024 18.7 2.5 46 2-47 16-67 (74)
55 PF12544 LAM_C: Lysine-2,3-ami 20.5 36 0.00079 24.7 0.2 18 41-58 2-19 (127)
56 COG1458 Predicted DNA-binding 20.4 1.2E+02 0.0025 23.9 2.9 23 86-108 93-117 (221)
57 TIGR03820 lys_2_3_AblA lysine- 20.2 1.3E+02 0.0029 25.7 3.5 39 16-58 285-323 (417)
No 1
>KOG0467|consensus
Probab=100.00 E-value=2.2e-44 Score=313.92 Aligned_cols=122 Identities=65% Similarity=1.050 Sum_probs=120.7
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
+||++|++|+|+|++++..+||++|.|+|++||.|||||+.+||..|+|.|++|++|+||+.++.||||+|+|+||++++
T Consensus 766 kvYAVlskR~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleef 845 (887)
T KOG0467|consen 766 KVYAVLSKRHGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEF 845 (887)
T ss_pred hHHhhhhhhcchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHhhcCCCCcCccCcchhHhHhhhhC
Q psy13097 81 GDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQRTVKRN 122 (123)
Q Consensus 81 ~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~~q~~l~~~ 122 (123)
|+.+|..|+|+.||+.|||||||.+|++||++||||||||||
T Consensus 846 GekADs~N~ArkYMdaVRRRKGLfVEEkIVE~AEKQRTLkkn 887 (887)
T KOG0467|consen 846 GEKADSENIARKYMDAVRRRKGLFVEEKIVEHAEKQRTLKKN 887 (887)
T ss_pred hhcccchhHHHHHHHHHHhhcCCchHHHHhhhHHhhcccccC
Confidence 999999999999999999999999999999999999999998
No 2
>KOG0469|consensus
Probab=99.95 E-value=9.1e-29 Score=210.70 Aligned_cols=101 Identities=37% Similarity=0.683 Sum_probs=95.4
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
+||++|+++||+|+++++..||++|+|+||+||.|||||..+|||.|.|+|++||+||||+++|+||+
T Consensus 742 giy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~lpgdp~------------ 809 (842)
T KOG0469|consen 742 GIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSILPGDPL------------ 809 (842)
T ss_pred hhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeeccccCCCCCC------------
Confidence 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHhhcCCCCcCccCcchhHhHhh
Q psy13097 81 GDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQRTV 119 (123)
Q Consensus 81 ~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~~q~~l 119 (123)
+++|...++|..+|||||| .+.++...++.++|
T Consensus 810 ----dp~sk~~~iV~~~RKrkgl--ke~~P~~~~y~Dkl 842 (842)
T KOG0469|consen 810 ----DPTSKPGQIVLATRKRKGL--KEGVPDLDEYLDKL 842 (842)
T ss_pred ----CCCccchHHHHHHHHhcCC--CCCCCChHHHhhcC
Confidence 7889999999999999999 57788888887764
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=99.95 E-value=1.8e-28 Score=218.67 Aligned_cols=100 Identities=38% Similarity=0.690 Sum_probs=90.1
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
+|+++|++|||+|+++++.+|+.+++|+|++|++|||||+++||++|+|+|+|+|+|+||++||+|||
T Consensus 736 ~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~dp~------------ 803 (836)
T PTZ00416 736 GIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVPGDPL------------ 803 (836)
T ss_pred HHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECCCCCC------------
Confidence 47899999999999999877877799999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHhhcCCCCcCccCcchhHhHhhhh
Q psy13097 81 GDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQRTVKR 121 (123)
Q Consensus 81 ~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~~q~~l~~ 121 (123)
+.+|+|++||++||+||||+++ + +++|+.+.|
T Consensus 804 ----~~~~~a~~~~~~~R~rKGl~~~--~---~~~~~~~~~ 835 (836)
T PTZ00416 804 ----EPGSKANEIVLSIRKRKGLKPE--I---PDLDNYLDK 835 (836)
T ss_pred ----CchhHHHHHHHHHHHhCCCCCC--C---CCHHHhccc
Confidence 4479999999999999999654 4 467766654
No 4
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.94 E-value=5.2e-28 Score=215.79 Aligned_cols=101 Identities=35% Similarity=0.701 Sum_probs=91.2
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
+|+++|++|||+|+++++.+|+++++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+|||
T Consensus 743 ~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~~v~~dp~------------ 810 (843)
T PLN00116 743 GIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL------------ 810 (843)
T ss_pred HHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeEECCCCCC------------
Confidence 47899999999999999877878899999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHhhcCCCCcCccCcchhHhHhh
Q psy13097 81 GDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQRTV 119 (123)
Q Consensus 81 ~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~~q~~l 119 (123)
+.+|+|++||++||+||||+ +++|.+.++-++|
T Consensus 811 ----~~~~~a~~~~~~~R~rKGl~--~~~~~~~~~~d~~ 843 (843)
T PLN00116 811 ----EAGSQAAQLVADIRKRKGLK--EQMPPLSEYEDKL 843 (843)
T ss_pred ----CchhHHHHHHHHHHhhCCCC--CCCCCHHHhcccC
Confidence 45799999999999999995 5577766665543
No 5
>KOG0468|consensus
Probab=99.94 E-value=1.8e-28 Score=213.03 Aligned_cols=109 Identities=35% Similarity=0.558 Sum_probs=102.8
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFG 81 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~ 81 (123)
||.+|++|||+|+...+.+|+++++|+|++||.|||||.+|||..|||+|++++.|+||++|||||+ ++......+
T Consensus 845 Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VPGDpL----DKsi~i~~L 920 (971)
T KOG0468|consen 845 VYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVPGDPL----DKSIAIRPL 920 (971)
T ss_pred HHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCCCCcc----ccccccccC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 688999999
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCcCccCcchh
Q psy13097 82 DKADTENRARKYMDSVRKRKGLPVQDKLVAHAE 114 (123)
Q Consensus 82 ~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~ 114 (123)
+|++.+++||++|.++|+||||+++..+-...+
T Consensus 921 ep~p~~~LaReFmiKTRRRKGlsedvS~~kffd 953 (971)
T KOG0468|consen 921 EPAPIRHLAREFMIKTRRRKGLSEDVSINKFFD 953 (971)
T ss_pred CCCCcchhHHHHHHHhhhhcccccccccCcccc
Confidence 999999999999999999999998876654443
No 6
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.89 E-value=1.5e-23 Score=139.25 Aligned_cols=64 Identities=39% Similarity=0.815 Sum_probs=59.6
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN 64 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp 64 (123)
+|+++|++|||+|++++..+++..+.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||
T Consensus 17 ~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 17 AVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred HHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 4789999999999998887776668999999999999999999999999999999999999986
No 7
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.88 E-value=3.8e-23 Score=181.96 Aligned_cols=82 Identities=29% Similarity=0.374 Sum_probs=74.7
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
.|+++|++|||+|++++. +++.++|+|++|++|||||+++||++|+|+|+|+|.|+||++||++
T Consensus 639 ~v~~~L~~RRg~i~~~~~--~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp~~-------------- 702 (720)
T TIGR00490 639 AATREIQNRRGQILEMKQ--EGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQN-------------- 702 (720)
T ss_pred HHHHHHhhCCceeeeecc--CCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCCHH--------------
Confidence 378999999999998875 3357999999999999999999999999999999999999999853
Q ss_pred CCCCCcccHHHHHHHHHHhhcCCCCc
Q psy13097 81 GDKADTENRARKYMDSVRKRKGLPVQ 106 (123)
Q Consensus 81 ~~~~~~~~~a~~~v~~iR~RKGL~~~ 106 (123)
+++++|.++|+||||+++
T Consensus 703 --------~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 703 --------LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred --------HHHHHHHHHHhhcCCCCC
Confidence 799999999999999853
No 8
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.87 E-value=1.4e-22 Score=178.64 Aligned_cols=88 Identities=28% Similarity=0.364 Sum_probs=77.5
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
.|+++|++|||+|++++.. + ++++|+|++|++|||||+++||++|+|+|+|+|.|+||++||+
T Consensus 641 ~v~~~L~~rrg~i~~~~~~-~-~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~--------------- 703 (731)
T PRK07560 641 AVTREIQGRRGKILDMEQE-G-DMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPD--------------- 703 (731)
T ss_pred HHHHHHHhcCCeeeeeecC-C-CcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCH---------------
Confidence 3789999999999998763 3 5799999999999999999999999999999999999999984
Q ss_pred CCCCCcccHHHHHHHHHHhhcCCCCcCccCcchh
Q psy13097 81 GDKADTENRARKYMDSVRKRKGLPVQDKLVAHAE 114 (123)
Q Consensus 81 ~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~ 114 (123)
++++++|.++|+||||++ +|+.+.+
T Consensus 704 -------~~~~~ii~~~r~rKGl~~--~~~~~~~ 728 (731)
T PRK07560 704 -------SLQLDIVRQIRERKGLKP--ELPKPED 728 (731)
T ss_pred -------HHHHHHHHHHHhhCCCCC--CCCChhh
Confidence 489999999999999974 4444443
No 9
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.9e-22 Score=173.15 Aligned_cols=81 Identities=31% Similarity=0.485 Sum_probs=76.4
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
.|+++|++|||+|++++...|+++++|+|++||+|||||+++|||+|+|+|.|+|+|+||+++|
T Consensus 617 ~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp---------------- 680 (697)
T COG0480 617 DVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVP---------------- 680 (697)
T ss_pred hhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCC----------------
Confidence 3789999999999999998677899999999999999999999999999999999999999998
Q ss_pred CCCCCcccHHHHHHHHHHhhcCC
Q psy13097 81 GDKADTENRARKYMDSVRKRKGL 103 (123)
Q Consensus 81 ~~~~~~~~~a~~~v~~iR~RKGL 103 (123)
.|++.+++.++|+|||+
T Consensus 681 ------~~~a~~ii~~~~~~~~~ 697 (697)
T COG0480 681 ------SSVAEEIIAKRRKRKGL 697 (697)
T ss_pred ------HHHHHHHHHHhhhhcCC
Confidence 45899999999999986
No 10
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.79 E-value=1.1e-19 Score=119.87 Aligned_cols=64 Identities=48% Similarity=0.955 Sum_probs=59.2
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN 64 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp 64 (123)
+|+++|++|||.|++++..++++.+.|+|++|++|+|||.++||++|+|+|+|++.|+||++||
T Consensus 17 ~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 17 KVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred HHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 3789999999999999876565668999999999999999999999999999999999999986
No 11
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.77 E-value=1.8e-19 Score=120.15 Aligned_cols=64 Identities=28% Similarity=0.440 Sum_probs=58.8
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDP 67 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp 67 (123)
|+++|++|||.|++++.. + +.+.|+|++|++++|||.++||++|+|+|++++.|+||+++|+|+
T Consensus 20 v~~~l~~rrG~i~~~~~~-~-~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 83 (85)
T smart00838 20 VIGDLNSRRGKIEGMEQR-G-GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVPKSI 83 (85)
T ss_pred HHHHHHHcCCEEECeecc-C-CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceECChhh
Confidence 788999999999998864 2 578999999999999999999999999999999999999999764
No 12
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.77 E-value=2.4e-19 Score=117.92 Aligned_cols=62 Identities=27% Similarity=0.510 Sum_probs=57.3
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN 64 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp 64 (123)
+|+++|++|||.|++++... +.+.|+|++|++|+|||.++||++|+|+|.++++|+||+++|
T Consensus 17 ~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 17 NVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred HHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 37899999999999998643 578999999999999999999999999999999999999986
No 13
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.77 E-value=2.9e-19 Score=117.51 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=56.9
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN 64 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp 64 (123)
+|+++|++|||.|++++... +.+.|+|++|++++|||.++||++|+|+|+++++|+||+++.
T Consensus 17 ~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 17 RAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred HHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 37899999999999988643 679999999999999999999999999999999999999873
No 14
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.76 E-value=3e-19 Score=117.09 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=57.2
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN 64 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp 64 (123)
+|+++|++|||.|++++.. ++.+.|+|++|++|+|||.++||++|+|.|+++++|+||++||
T Consensus 17 ~v~~~l~~rrg~i~~~~~~--~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 17 DVIGDLSSRRGQILGTESR--GGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred HHHHHHHHcCCceEceecc--CCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 3789999999999999874 3578999999999999999999999999999999999999986
No 15
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.74 E-value=1.5e-18 Score=113.87 Aligned_cols=63 Identities=32% Similarity=0.483 Sum_probs=58.0
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN 64 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp 64 (123)
+|+++|++|||.|++++..+ ++++.|+|++|++|+|||.++||+.|+|+|.+++.|+||++++
T Consensus 17 ~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 17 AVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred HHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 37899999999999988753 4689999999999999999999999999999999999999875
No 16
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.74 E-value=5.4e-19 Score=118.99 Aligned_cols=67 Identities=34% Similarity=0.454 Sum_probs=60.0
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPY 68 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~ 68 (123)
+|+++|++|||.|++++.. +.+++.|+|.+|+++++||.++||+.|+|+|.+++.|+||++++++++
T Consensus 20 ~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~~~~~~~ 86 (89)
T PF00679_consen 20 KVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRPVPGDIL 86 (89)
T ss_dssp HHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEEESHHHH
T ss_pred HHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEECCCChh
Confidence 3789999999999999987 457999999999999999999999999999999999999999998754
No 17
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.71 E-value=6.5e-18 Score=111.55 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=56.8
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEccccccc
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVI 63 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~v 63 (123)
+|+++|++|||.|++.+... .+.+.|+|.+|++++|||.++||++|+|+|+|+++|+||++.
T Consensus 17 ~V~~~l~~rrg~i~~~~~~~-~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 17 AVIEKLGKRKGEMVDMEPDG-NGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred HHHHHHHhCCCEEEccEECC-CCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 37899999999999998753 367899999999999999999999999999999999999975
No 18
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.66 E-value=1.1e-16 Score=106.09 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=55.5
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhH-hhhhHHHHhhcCCCccceeEccccccc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVES-FSFAPEIRKSTSGLASPQLVFSHWEVI 63 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~Es-fGf~~~LRs~T~G~a~~~~~F~hw~~v 63 (123)
|+++|++|||.|++++...+ +.+.|+|.+|++++ +||.++||++|+|+|.|++.|+||++.
T Consensus 18 V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 18 IMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred HHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 78999999999999987532 46889999999999 699999999999999999999999875
No 19
>PRK12739 elongation factor G; Reviewed
Probab=99.64 E-value=1.2e-16 Score=140.19 Aligned_cols=64 Identities=30% Similarity=0.539 Sum_probs=59.0
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINID 66 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~d 66 (123)
+|+++|++|||+|+++++.++ .++|+|++|++|+|||+++||++|+|+|+|+|.|+||++||++
T Consensus 616 ~v~~~L~~RRg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~ 679 (691)
T PRK12739 616 DVIGDLNRRRGQIQGMEARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKN 679 (691)
T ss_pred hHHHHHHhcCCeEECccccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHH
Confidence 478999999999999987654 5789999999999999999999999999999999999999864
No 20
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=1.7e-16 Score=139.27 Aligned_cols=65 Identities=22% Similarity=0.322 Sum_probs=59.9
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDP 67 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp 67 (123)
+|+++|++|||+|+++++.. +.+.|+|++|++|+|||+++||++|+|+|+|+|.|+||++||+++
T Consensus 616 ~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 680 (689)
T TIGR00484 616 DVMGDLSSRRGIIEGMEARG--NVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSV 680 (689)
T ss_pred hHHHHHHhcCCeEecccccC--CcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHH
Confidence 47899999999999987643 578999999999999999999999999999999999999999774
No 21
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=1.2e-16 Score=139.75 Aligned_cols=67 Identities=27% Similarity=0.373 Sum_probs=60.0
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPY 68 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~ 68 (123)
+|+++|++|||+|++++...++. +.|+|++|++|||||+++||++|+|+|+|+|+|+||++||++++
T Consensus 615 ~v~~~l~~rrg~i~~~~~~~~~~-~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~ 681 (687)
T PRK13351 615 DVLGDLSQRRGRIEGTEPRGDGE-VLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQ 681 (687)
T ss_pred hHHHHHHhCCcEEeceecCCCcE-EEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHH
Confidence 47899999999999998765543 34999999999999999999999999999999999999998753
No 22
>PRK00007 elongation factor G; Reviewed
Probab=99.60 E-value=4.9e-16 Score=136.59 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=58.8
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINID 66 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~d 66 (123)
+|+++|++|||+|.++++.. +.+.|+|++|++|||||+++||++|+|+|+|+|.|+||++||++
T Consensus 619 ~v~~~L~~RRg~i~~~~~~~--~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~ 682 (693)
T PRK00007 619 DVIGDLNSRRGQIEGMEDRG--GAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKN 682 (693)
T ss_pred hHHHHHHhCCCeEecccccC--CcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHH
Confidence 47899999999999987643 46889999999999999999999999999999999999999965
No 23
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=4.1e-16 Score=135.94 Aligned_cols=66 Identities=30% Similarity=0.420 Sum_probs=60.3
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPY 68 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~ 68 (123)
+|+++|++|||.|++++..++ . +.|+|++|++|+|||+++||+.|+|+|+|+|.|+||+++|++++
T Consensus 598 ~v~~~l~~rrg~i~~~~~~~~-~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~ 663 (668)
T PRK12740 598 DVIGDLSSRRGRILGMESRGG-G-DVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNVA 663 (668)
T ss_pred hHHHHHHhCCCeEeccccCCC-C-EEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCCHHHH
Confidence 478999999999999987654 3 88999999999999999999999999999999999999997643
No 24
>KOG0465|consensus
Probab=99.47 E-value=2.7e-14 Score=124.02 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=58.9
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINID 66 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~d 66 (123)
|+++|++|+|.|.+.+..+ +.++|+|.+|+.+||||+++|||+|+|+|.|+|+|++|+++|.+
T Consensus 650 Vi~~L~kR~a~I~~~d~~~--~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~ 712 (721)
T KOG0465|consen 650 VIGDLNKRKAQITGIDSSE--DYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPD 712 (721)
T ss_pred hhhhhhhcccEEecccCCC--ceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchH
Confidence 7899999999999988643 68999999999999999999999999999999999999999865
No 25
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.40 E-value=2.5e-13 Score=118.17 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=59.8
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINID 66 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~d 66 (123)
|+++|++|||+|+++++..+ ++..|.|.+|+++++||.++|||+|+|.|.|++.|+||+++|++
T Consensus 411 v~~~l~~RrG~~~~~~~~~~-~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~ 474 (594)
T TIGR01394 411 VIEKLGKRKGEMVDMEPSGN-GRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGE 474 (594)
T ss_pred HHHHHHHhCCEEeccEECCC-CEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCc
Confidence 78999999999999998533 68899999999999999999999999999999999999999976
No 26
>PRK10218 GTP-binding protein; Provisional
Probab=99.38 E-value=3.5e-13 Score=117.61 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=59.4
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccC-CC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN-ID 66 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp-~d 66 (123)
|+++|++|||+|+++++.. .++..|.|.+|.++++||.++|||.|+|.|.|++.|+||+++| ++
T Consensus 415 V~~~l~~RrG~~~~m~~~~-~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~ 479 (607)
T PRK10218 415 VMQALGERKGDLKNMNPDG-KGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGE 479 (607)
T ss_pred HHHHHHhcCCEEeccEECC-CCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCC
Confidence 7899999999999999753 3688999999999999999999999999999999999999998 54
No 27
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.29 E-value=2.5e-12 Score=112.00 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=70.8
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhH-hhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVES-FSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~Es-fGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
|++++++|||++++++... +...|+|.+|++|+ ++|.++|||+|+|.|+|.+.|+||++..-- .=++.-.
T Consensus 421 vm~~~~~rRG~~~~~~~~~--~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~~~-------~~~~~~n 491 (600)
T PRK05433 421 VMELCQEKRGVQKDMEYLG--NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRESDLV-------KLDILIN 491 (600)
T ss_pred HHHHHHHcCCEEeCcEecC--CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccccEE-------EEEEEEC
Confidence 7899999999999999854 36899999999999 999999999999999999999999976421 2234445
Q ss_pred CCCCC----------cccHHHHHHHHHH
Q psy13097 81 GDKAD----------TENRARKYMDSVR 98 (123)
Q Consensus 81 ~~~~~----------~~~~a~~~v~~iR 98 (123)
|+++| ..+.+++++.+.+
T Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 519 (600)
T PRK05433 492 GEPVDALSFIVHRDKAYERGRALVEKLK 519 (600)
T ss_pred CcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 55554 3566777777654
No 28
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.27 E-value=3e-12 Score=111.38 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=69.9
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhH-hhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVES-FSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~Es-fGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
|+++|++|||++++++...+ ....|+|.+|++|+ ++|.++|||+|+|.|+|.++|+||++-.-- .=++.-.
T Consensus 417 vm~~~~~rRG~~~~~~~~~~-~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~~~-------~~~~~~n 488 (595)
T TIGR01393 417 IMTLCQEKRGVQTNMEYLDP-NRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPSDLV-------KLDILIN 488 (595)
T ss_pred HHHHHHHcCCEEeCcEEcCC-CeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccccceE-------EEEEEEC
Confidence 78999999999999998543 36889999999997 999999999999999999999999974311 2233444
Q ss_pred CCCCC----------cccHHHHHHHHHH
Q psy13097 81 GDKAD----------TENRARKYMDSVR 98 (123)
Q Consensus 81 ~~~~~----------~~~~a~~~v~~iR 98 (123)
|+++| ..+.+++++.+.+
T Consensus 489 ~~~~d~l~~~~~~~~~~~~~~~~~~~l~ 516 (595)
T TIGR01393 489 GEPVDALSFIVHRDKAYSRGREICEKLK 516 (595)
T ss_pred CcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 55544 3566777777754
No 29
>KOG0464|consensus
Probab=98.70 E-value=9.9e-09 Score=87.47 Aligned_cols=64 Identities=25% Similarity=0.340 Sum_probs=59.1
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINI 65 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~ 65 (123)
|+++|.+|||++.+.+..+.+..-.|.|++|++|..||++.||.+|+|.|.|.++|++|+.|..
T Consensus 676 iladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~ 739 (753)
T KOG0464|consen 676 ILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNE 739 (753)
T ss_pred HHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcCh
Confidence 5678999999999988887777778999999999999999999999999999999999999964
No 30
>KOG0462|consensus
Probab=97.70 E-value=3.5e-05 Score=67.37 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=55.0
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhh-hhHHHHhhcCCCccceeEccccc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFS-FAPEIRKSTSGLASPQLVFSHWE 61 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfG-f~~~LRs~T~G~a~~~~~F~hw~ 61 (123)
|+..++.|||...++...+++ ...++=++|++|+.| |-..|.|.|+|-|++..+|++|+
T Consensus 473 Vi~Lc~~rRgeq~dm~~i~~n-r~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~ 532 (650)
T KOG0462|consen 473 VIELCSERRGEQKDMTYIDGN-RVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ 532 (650)
T ss_pred HHHHHHHhhhheecceeccCC-eEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc
Confidence 677889999999999998775 677999999999999 99999999999999999999999
No 31
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.00 E-value=0.00021 Score=61.88 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=58.7
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINID 66 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~d 66 (123)
|+..|..|.|...+|.+. |.++..+.-.+|..-++||.++.-+.|+|.|...-.|+||+++.++
T Consensus 415 Vie~lg~RKgem~~M~~~-g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~ 478 (603)
T COG1217 415 VIEKLGERKGEMKDMAPD-GKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGE 478 (603)
T ss_pred HHHHHhhhhHhHhhcccC-CCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccccc
Confidence 567788999999999985 5679999999999999999999999999999999999999999774
No 32
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=95.75 E-value=0.012 Score=51.27 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=52.6
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhH-hhhhHHHHhhcCCCccceeEccccccc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVES-FSFAPEIRKSTSGLASPQLVFSHWEVI 63 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~Es-fGf~~~LRs~T~G~a~~~~~F~hw~~v 63 (123)
|+...+.+||.-.+++... ..-..+.-.+|++|. |+|-+.|.|.|.|-|+|-.+|..|++-
T Consensus 423 vm~Lcq~kRG~~~~m~yl~-~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~ 484 (603)
T COG0481 423 VMELCQEKRGIQIDMEYLD-QNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRES 484 (603)
T ss_pred HHHHHHHhcCceecceEec-CceEEEEEecchHHHHHHHhHhhhccccceeeecccccccccc
Confidence 5666778999999998863 346778999999995 699999999999999999999999864
No 33
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=88.35 E-value=0.54 Score=27.81 Aligned_cols=45 Identities=27% Similarity=0.256 Sum_probs=37.1
Q ss_pred ccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCC
Q psy13097 3 YAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGL 50 (123)
Q Consensus 3 ~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~ 50 (123)
-..|....+.|.+++-.+ ...+...+|..+.-.|...|..+|+|+
T Consensus 12 ~~~l~~~~~~i~~~~y~~---~V~~~v~v~~~~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 12 ERLLEQNGIEIVDEDYTD---DVTLTVAVPEEEVEEFKAQLTDLTSGR 56 (56)
T ss_dssp HHHHHHTTTEEEEEEECT---TEEEEEEEECCCHHHHHHHHHHHTTT-
T ss_pred HHHHHHCCCEEEcceecc---eEEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 345677788998887643 378999999999999999999999996
No 34
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=53.27 E-value=53 Score=24.44 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=54.5
Q ss_pred cccccccCCeEEeeeee----cCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccC-------CCCCCC
Q psy13097 2 LYAVLGRRHGRIVYGDV----TQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN-------IDPYWE 70 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~----~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp-------~dp~~~ 70 (123)
|+..|..-.-.+.++-+ .+|+++. |-|.++-.+. |...|.+..+....|++....-.-.+ .+.|
T Consensus 9 i~~~L~~~~PiL~GTiPi~Idi~~SDLD-Iic~~~d~~~--F~~~l~~~f~~~~~f~~~~~~i~~~~~~~~~F~~~~~-- 83 (152)
T PF14091_consen 9 ILEKLAAYDPILVGTIPIGIDIPGSDLD-IICEVPDPEA--FEQLLQSLFGQFEGFTIKEKTIRGEPSIVANFRYEGF-- 83 (152)
T ss_pred HHHHhhcCCCEEecccccccCCCCCCcc-EEEEeCCHHH--HHHHHHHHhccCCCceeeeceeCCceeEEEEEEECCc--
Confidence 44555555556666544 2466664 7888886554 56777777665555555432111111 1112
Q ss_pred CCchhhhhhcCCCCC-------------------cccHHHHHHHHHHhhcCCCCcCc
Q psy13097 71 PRTEEEYLHFGDKAD-------------------TENRARKYMDSVRKRKGLPVQDK 108 (123)
Q Consensus 71 ~~~~~~~~~~~~~~~-------------------~~~~a~~~v~~iR~RKGL~~~~~ 108 (123)
++|-||++.+ .+.-+++=|.++| +-||++|+.
T Consensus 84 -----~~EiF~Q~~Pv~~QnayrHm~iE~rLL~~~g~~~r~~Ii~LK-~~GlKTEPA 134 (152)
T PF14091_consen 84 -----PFEIFGQPIPVEEQNAYRHMLIEHRLLELHGPSFREEIIELK-ESGLKTEPA 134 (152)
T ss_pred -----eEEEeecCCChhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HcCCcchHH
Confidence 3567777665 2244566666666 889988764
No 35
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=45.15 E-value=32 Score=26.56 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=38.2
Q ss_pred ccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccc
Q psy13097 3 YAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASP 53 (123)
Q Consensus 3 ~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~ 53 (123)
...|.+..+.|++.+-.+ ..++...+|..+.--|...|..+|+|++.+
T Consensus 152 ~~~l~~~~~~i~~~~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~ 199 (204)
T TIGR00257 152 ERELKKFQLEIIKSNFSN---NVVLVEISGTKENLAFSEQLTEISLGQLIL 199 (204)
T ss_pred HHHHHHCCCEEEeeEecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 445666778888877632 478999999999989999999999998754
No 36
>PRK13760 putative RNA-associated protein; Provisional
Probab=36.31 E-value=28 Score=27.55 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=36.3
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccce
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQ 54 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~ 54 (123)
+++.|.+ -|.|..++-..+ +.....+.+|-.---.|.+.|+..|.|.|...
T Consensus 178 ~~~~l~~-~~~i~~eew~~d-gs~~~v~~Ip~G~~~~~~~~~~~~tkG~~~~~ 228 (231)
T PRK13760 178 AYGELRK-FGEIKKEEWQSD-GSWIAVLEIPAGLQNEFYDKLNKLTKGEAETK 228 (231)
T ss_pred HHHHHHh-hcccchhhccCC-CcEEEEEEECCccHHHHHHHHHHhcCCcEEEE
Confidence 4566666 778877654322 23456678998766678999999999998654
No 37
>PRK11568 hypothetical protein; Provisional
Probab=36.27 E-value=45 Score=25.78 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=37.8
Q ss_pred ccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccc
Q psy13097 3 YAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASP 53 (123)
Q Consensus 3 ~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~ 53 (123)
...|.+..+.|++.+-.+ ..++...+|..+.--|...|..+|+|++.+
T Consensus 152 ~~~l~~~~~~i~~~~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~ 199 (204)
T PRK11568 152 EALLGQFDGKIVNSEYQA---FVTLRVALPAAKVAEFSAKLADFSRGSLQL 199 (204)
T ss_pred HHHHHHCCCEEEcceecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 445666777888877632 467889999999889999999999998754
No 38
>PF07537 CamS: CamS sex pheromone cAM373 precursor; InterPro: IPR011426 This family includes CamS (Q8L313 from SWISSPROT), from which Staphylococcus aureus sex pheromone staph-cAM373 is processed. It also includes a number of uncharacterised bacterial proteins.; PDB: 3N2Q_A 3IB5_A 2QX2_A.
Probab=34.18 E-value=17 Score=30.03 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=27.5
Q ss_pred CCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCCcCccCcch
Q psy13097 70 EPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAHA 113 (123)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~ 113 (123)
..-++++++..| ..+|.++|..+|++++|+ +..|+...
T Consensus 135 ~~Is~~e~~~~G-----k~~A~~iv~rlR~~~~l~-~vPI~ial 172 (319)
T PF07537_consen 135 VEISDEEMEAYG-----KEMANKIVKRLRKKKGLK-DVPIVIAL 172 (319)
T ss_dssp EES-HHHHHHHH-----HHHHHHHHHHHHHCCCGS-SS-EEEEE
T ss_pred EecCHHHHHHHH-----HHHHHHHHHHHHhccccC-CCCEEEEE
Confidence 334678888877 667999999999999994 55555443
No 39
>KOG3583|consensus
Probab=32.52 E-value=31 Score=27.62 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=31.4
Q ss_pred EEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCC
Q psy13097 26 TVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPR 72 (123)
Q Consensus 26 ~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~ 72 (123)
.-+..+|+.-+..=.+.|.-+|.|+. ++|+| +.||...-..|.
T Consensus 71 r~~~~~~~~~~~e~detl~r~TeGRV---pvfsH-~lVPdyLRTkPd 113 (279)
T KOG3583|consen 71 RSHVLVTQRLQYEPDETLQRATEGRV---PVFSH-ALVPDYLRTKPD 113 (279)
T ss_pred ccchhhhhhhhcCchHHHHHHhcCcc---ccccc-ccchHhhccCCC
Confidence 34556777777777788999999996 78999 788865443443
No 40
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=31.91 E-value=54 Score=27.79 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=31.9
Q ss_pred eecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEccc
Q psy13097 17 DVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSH 59 (123)
Q Consensus 17 ~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~h 59 (123)
+...|+.-| .+|+++-......||+.|||-+.+.+.+++
T Consensus 290 D~~~G~~hf----r~~i~~~~~i~~~lr~~~SG~~~P~~v~d~ 328 (369)
T COG1509 290 DLVQGAAHF----RVPIAEGLQIVEELRGRTSGYAVPTLVVDI 328 (369)
T ss_pred CccCCccce----eccHHHHHHHHHHHHHhCCCcccceeEEec
Confidence 344554433 799999999999999999999999888775
No 41
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=31.37 E-value=51 Score=25.90 Aligned_cols=35 Identities=23% Similarity=0.506 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHhhcCCCCcCccCcchhHhHhhhh
Q psy13097 86 TENRARKYMDSVRKRKGLPVQDKLVAHAEKQRTVKR 121 (123)
Q Consensus 86 ~~~~a~~~v~~iR~RKGL~~~~~i~~~~~~q~~l~~ 121 (123)
.+++..++|+.+|.|-. +..+.+-.|+.+.|+|++
T Consensus 42 qEsireefi~rvr~~m~-pl~~~va~Hpny~rsl~~ 76 (215)
T PF07368_consen 42 QESIREEFIERVRSRMK-PLSPQVANHPNYLRSLKK 76 (215)
T ss_pred eHHHHHHHHHHHHHhCc-cCChhhccCcHHHHHHHH
Confidence 57899999999999876 346889999999999976
No 42
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=31.13 E-value=45 Score=32.72 Aligned_cols=32 Identities=44% Similarity=0.403 Sum_probs=25.5
Q ss_pred CcccHHHHHHHHHHhhcCCCCcCccCcchhHhHhhhhCC
Q psy13097 85 DTENRARKYMDSVRKRKGLPVQDKLVAHAEKQRTVKRNK 123 (123)
Q Consensus 85 ~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~~q~~l~~~~ 123 (123)
-++++|-.||..+||=|||.+ +|.+..++.|+
T Consensus 1223 lep~~AFkIME~VRKGk~lk~-------~e~~~~Mke~~ 1254 (1444)
T COG2176 1223 LEPSLAFKIMEFVRKGKGLKP-------AEYEELMKENK 1254 (1444)
T ss_pred CCcchHHHHHHHHhccCCCCh-------HHHHHHHHHcC
Confidence 378999999999999999965 66666666553
No 43
>PLN02390 molybdopterin synthase catalytic subunit
Probab=30.28 E-value=36 Score=23.82 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=30.9
Q ss_pred HHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCC
Q psy13097 43 IRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGL 103 (123)
Q Consensus 43 LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL 103 (123)
.|..+.|+..-.+.|++|++|-. ...++|..+++++-|+
T Consensus 14 VR~~~~g~~V~~L~yeay~~ma~----------------------~~l~~I~~e~~~~~~~ 52 (111)
T PLN02390 14 TRDTFEGKTVLELRYEAYVPMAL----------------------RELRKICDEARSRWSL 52 (111)
T ss_pred ECCCCCCCcEeeEEEEEcHHHHH----------------------HHHHHHHHHHHHhCCC
Confidence 46677788888999999998843 2567888888888775
No 44
>KOG2204|consensus
Probab=30.24 E-value=22 Score=31.82 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=29.0
Q ss_pred CceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCC
Q psy13097 22 SVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPY 68 (123)
Q Consensus 22 t~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~ 68 (123)
.+.-.|....=.+...|+++.=-|.-+--++++++|+|-..+.++|.
T Consensus 304 Ip~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS~ltg~P~ 350 (625)
T KOG2204|consen 304 IPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLSKLTGNPT 350 (625)
T ss_pred CchhhhccccCccCCcccccCcchHhhhcCceeeehHHhhhccCCch
Confidence 33334444444455555544322333446679999999999999986
No 45
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=30.17 E-value=38 Score=28.39 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=33.7
Q ss_pred cccCCCC-CCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCCcCccCcchhHh
Q psy13097 61 EVINIDP-YWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQ 116 (123)
Q Consensus 61 ~~vp~dp-~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~~q 116 (123)
..-.+|+ |..--++.++..-| ..+|.++++.+|+.+||. +..|+...=||
T Consensus 185 kEkdg~~~fe~eisds~l~~qG-----ekiaqeVlnRlR~~d~lk-diPI~iAlykq 235 (382)
T COG4851 185 KEKDGDTYFETEISDSKLLEQG-----EKIAQEVLNRLRREDGLK-DIPITIALYKQ 235 (382)
T ss_pred ecccCCccceeecCHHHHHHHH-----HHHHHHHHHHHHhhcCCc-cCceEEEEecc
Confidence 3457888 43444566666655 568999999999999985 45555444444
No 46
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=30.13 E-value=49 Score=23.00 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=29.0
Q ss_pred HHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCC
Q psy13097 43 IRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLP 104 (123)
Q Consensus 43 LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~ 104 (123)
.|..+.|...-.+.|.+|.++. .....+|..++++|-|+.
T Consensus 33 VR~~~~~~~v~~L~ye~y~~ma----------------------~~~l~~I~~e~~~~~~~~ 72 (117)
T PF02391_consen 33 VRNHSDGKKVEALEYEAYEEMA----------------------EKELEEIAEEARERFGIV 72 (117)
T ss_dssp --CCCTCCCEEEEEEEE-HHHH----------------------HHHHHHHHHHHHHHSTTC
T ss_pred ECCCCCCccEEEEEEEEccHHH----------------------HHHHHHHHHHHHHhCCCe
Confidence 4777777777788888888664 235789999999999974
No 47
>PRK04358 hypothetical protein; Provisional
Probab=28.87 E-value=35 Score=26.85 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=20.9
Q ss_pred cccHHHHHHHHHHhh--cCCCCcCccCcch
Q psy13097 86 TENRARKYMDSVRKR--KGLPVQDKLVAHA 113 (123)
Q Consensus 86 ~~~~a~~~v~~iR~R--KGL~~~~~i~~~~ 113 (123)
+..+..+||.++|.| |||-.-|+-+-.|
T Consensus 93 PA~i~ye~I~~mR~RInkGLRVAEeavrea 122 (217)
T PRK04358 93 PAEIFYEYIEDMRERINKGLRVAEEAVREA 122 (217)
T ss_pred cHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 467899999999988 9997655444433
No 48
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=27.57 E-value=40 Score=24.35 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=27.5
Q ss_pred cccccC-CCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCCcC
Q psy13097 59 HWEVIN-IDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQD 107 (123)
Q Consensus 59 hw~~vp-~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~~~ 107 (123)
+|+.++ .||+--..|+.+ .+..--.++.......|+++|+.+||++-+
T Consensus 71 ~~~i~~i~d~~Gpt~~~~~-~d~lVVS~ET~~~~~~iN~~R~~~gl~pl~ 119 (143)
T cd02164 71 KYEIVPIDDPYGPTGTDPD-LEAIVVSPETYPGALKINRKREENGLSPLE 119 (143)
T ss_pred eEEEEEccCCCCCcccCCC-CCEEEEcHHHhhhHHHHHHHHHHCCCCcee
Confidence 566664 466532222211 222222334556678999999999997644
No 49
>PRK00194 hypothetical protein; Validated
Probab=26.23 E-value=41 Score=21.55 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=34.3
Q ss_pred cccccccCCeEEeeeeecCCCceEEE--EEEcCh--hhHhhhhHHHHhhcCCCccceeEccc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTV--QAYLPV--VESFSFAPEIRKSTSGLASPQLVFSH 59 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I--~A~lPv--~EsfGf~~~LRs~T~G~a~~~~~F~h 59 (123)
|.+.|+.+.+.|.+.+.....+.+.+ .+.+|- .+.-.+.++|.......+ ..+.|.+
T Consensus 20 vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~ 80 (90)
T PRK00194 20 VSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELG-VKIRIQH 80 (90)
T ss_pred HHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcC-CEEEEEh
Confidence 56778888999998876322234444 666774 223466677777765544 3444433
No 50
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=23.17 E-value=62 Score=22.89 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCC
Q psy13097 43 IRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLP 104 (123)
Q Consensus 43 LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~ 104 (123)
.|..+.|+..-.+.+.+|.+|.. ....+|+.+++++-|+.
T Consensus 25 VR~~~~~~~v~~L~ye~y~~ma~----------------------~~l~~I~~e~~~k~~~~ 64 (124)
T cd00756 25 VRDHDEGKGVEALEYEAYPPMAE----------------------KELEEIAEEARERWGLL 64 (124)
T ss_pred ECCCCCCCcEeEEEEEECchHHH----------------------HHHHHHHHHHHHhCCCc
Confidence 36666777778888888876642 35788999999998863
No 51
>KOG4710|consensus
Probab=22.90 E-value=31 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=27.7
Q ss_pred HHHHhhcCCCccceeEcccccccCCCCCCCCCch
Q psy13097 41 PEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTE 74 (123)
Q Consensus 41 ~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~ 74 (123)
.+|+|.++|....+..|..-..-+-||||...++
T Consensus 14 p~L~s~~~~~~ev~V~F~Nr~~r~vd~~Wln~~~ 47 (170)
T KOG4710|consen 14 PQLVSADQGKVEVYVLFANRTYRTVDLYWLNERE 47 (170)
T ss_pred cccccccCCCceEEEEEecCCCceeeeEEECCCC
Confidence 4789999999989999987666677899976543
No 52
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=22.01 E-value=69 Score=23.63 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=30.8
Q ss_pred hHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCC
Q psy13097 40 APEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGL 103 (123)
Q Consensus 40 ~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL 103 (123)
.-..|..+.|+..-.|.|.+|.+|.. ....+|..+++.|-|+
T Consensus 35 ~G~VR~~~~g~~V~~L~yeay~~ma~----------------------k~l~~I~~ea~~~~~~ 76 (150)
T PRK10678 35 TGKVRNHNLGDSVKALTLEHYPGMTE----------------------KALAEIVDEARSRWPL 76 (150)
T ss_pred EEEECCCCCCCceeEEEEEecCcHHH----------------------HHHHHHHHHHHHhCCC
Confidence 33447777788778889999887742 2467888888888876
No 53
>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.
Probab=21.41 E-value=76 Score=23.54 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=20.3
Q ss_pred CCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCC
Q psy13097 71 PRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPV 105 (123)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~ 105 (123)
|.+++++.+.+..-. -+++|..|.+-|+.-|++.
T Consensus 121 PlSD~~i~~~L~~~g-i~isRRTVaKYR~~L~Ip~ 154 (160)
T PF04552_consen 121 PLSDQEIAELLKEEG-IKISRRTVAKYREELGIPS 154 (160)
T ss_dssp ---HHHHHHHHTTTT-S---HHHHHHHHHHHT-S-
T ss_pred CCCHHHHHHHHHHcC-CCccHHHHHHHHHHcCCCC
Confidence 346777776665443 7899999999999998863
No 54
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.73 E-value=1.1e+02 Score=18.75 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=27.8
Q ss_pred cccccccCCeEEeeeeec--CCCceEEEE--EEcChh--hHhhhhHHHHhhc
Q psy13097 2 LYAVLGRRHGRIVYGDVT--QGSVTFTVQ--AYLPVV--ESFSFAPEIRKST 47 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~--~gt~~~~I~--A~lPv~--EsfGf~~~LRs~T 47 (123)
|.+.|+.+.+.|.+.... .+...+.+. +.+|-. +.-.+.+.|....
T Consensus 16 it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 16 VSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred HHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 567788899999988764 233445554 445522 3445666666554
No 55
>PF12544 LAM_C: Lysine-2,3-aminomutase ; PDB: 2A5H_D.
Probab=20.46 E-value=36 Score=24.66 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=12.1
Q ss_pred HHHHhhcCCCccceeEcc
Q psy13097 41 PEIRKSTSGLASPQLVFS 58 (123)
Q Consensus 41 ~~LRs~T~G~a~~~~~F~ 58 (123)
..||..|||.|.++++.|
T Consensus 2 e~LRGhtSGlAvPtyVvD 19 (127)
T PF12544_consen 2 ESLRGHTSGLAVPTYVVD 19 (127)
T ss_dssp HTTCTTC-GGG--EEEEE
T ss_pred ccccccccccccceEEEE
Confidence 358999999999888875
No 56
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=20.41 E-value=1.2e+02 Score=23.94 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHHhh--cCCCCcCc
Q psy13097 86 TENRARKYMDSVRKR--KGLPVQDK 108 (123)
Q Consensus 86 ~~~~a~~~v~~iR~R--KGL~~~~~ 108 (123)
+..+.++||..+|.| |||..-++
T Consensus 93 Pa~ifyeyV~diR~RinkGlRvAE~ 117 (221)
T COG1458 93 PAAIFYEYVEDIRERINKGLRVAEE 117 (221)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 456889999999998 89865443
No 57
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.18 E-value=1.3e+02 Score=25.75 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=31.2
Q ss_pred eeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcc
Q psy13097 16 GDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFS 58 (123)
Q Consensus 16 ~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~ 58 (123)
.+...|+.-| .+|+.+-..+-..||..|+|-|.++++-+
T Consensus 285 ~d~v~G~~hF----rv~~~~g~~I~~~lr~~~sG~~vP~~v~d 323 (417)
T TIGR03820 285 CDLSEGLSHF----RTPVGKGIEIIESLIGHTSGFAVPTYVVD 323 (417)
T ss_pred ccCCCCcccc----cCcHHHHHHHHHHHHHhCCCCCceEEEEe
Confidence 3445565444 78999999999999999999998887654
Done!