Query psy13097
Match_columns 123
No_of_seqs 220 out of 1213
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:27:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 5.1E-29 1.7E-33 220.4 7.9 96 2-115 743-838 (842)
2 3j25_A Tetracycline resistance 99.8 1.7E-21 5.7E-26 167.9 4.1 85 2-97 553-637 (638)
3 4fn5_A EF-G 1, elongation fact 99.8 1.2E-19 4.3E-24 157.5 5.6 65 1-67 636-700 (709)
4 2rdo_7 EF-G, elongation factor 99.7 2.8E-18 9.5E-23 149.4 6.0 65 1-67 630-694 (704)
5 2xex_A Elongation factor G; GT 99.7 4E-18 1.4E-22 148.1 4.6 63 2-66 619-681 (693)
6 2dy1_A Elongation factor G; tr 99.7 5.1E-18 1.8E-22 146.7 5.1 63 2-66 590-652 (665)
7 1dar_A EF-G, elongation factor 99.7 5.3E-18 1.8E-22 147.3 3.0 64 2-67 620-683 (691)
8 3e3x_A BIPA; MCSG,PSI2, struct 99.6 4.5E-16 1.6E-20 126.2 5.6 65 2-67 142-207 (332)
9 2ywe_A GTP-binding protein LEP 99.4 1.2E-13 3.9E-18 119.0 6.2 90 2-99 422-522 (600)
10 3cb4_D GTP-binding protein LEP 99.4 1.5E-13 5E-18 118.3 5.4 89 2-99 418-517 (599)
11 3lh2_S 4E10_1VI7A_S0_002_N (T8 92.3 0.068 2.3E-06 33.4 2.0 49 2-53 22-70 (76)
12 1vi7_A Hypothetical protein YI 64.6 5.6 0.00019 30.0 3.4 50 2-54 154-203 (217)
13 2cve_A Hypothetical protein TT 47.9 10 0.00034 28.1 2.3 48 3-53 143-190 (191)
14 3n2q_A Sex pheromone staph-CAM 46.5 5.9 0.0002 31.2 0.9 34 73-112 102-135 (287)
15 3g5g_A Regulatory protein; tra 44.9 9.2 0.00031 24.4 1.5 38 58-105 7-44 (99)
16 4hn3_A LMO1757 protein; struct 40.3 5.1 0.00017 32.4 -0.4 48 59-112 152-200 (350)
17 2ahq_A Sigma-54, RNA polymeras 38.5 15 0.0005 23.2 1.7 34 71-105 37-70 (76)
18 2q5w_E Molybdopterin-convertin 34.5 21 0.00071 25.2 2.1 40 43-104 36-75 (149)
19 3ib5_A Sex pheromone precursor 33.5 7.6 0.00026 31.3 -0.4 42 65-113 153-194 (348)
20 2wp4_A Molybdopterin-convertin 33.0 17 0.00058 25.6 1.4 40 43-104 44-83 (147)
21 2kdo_A Ribosome maturation pro 32.6 26 0.0009 26.9 2.6 51 2-55 188-238 (252)
22 2qx2_A Sex pheromone staph-CAM 31.2 7.9 0.00027 31.2 -0.6 42 65-112 150-191 (344)
23 1fm0_E Molybdopterin convertin 29.4 19 0.00067 25.3 1.2 39 43-103 38-76 (150)
24 2wbm_A MTHSBDS, ribosome matur 26.8 50 0.0017 25.4 3.2 50 3-54 200-249 (252)
25 4ap8_A Molybdopterin synthase 24.1 27 0.00091 24.3 1.1 39 43-103 41-79 (135)
26 1t95_A Hypothetical protein AF 23.3 46 0.0016 25.4 2.4 51 3-55 185-235 (240)
27 2omd_A Molybdopterin-convertin 22.8 28 0.00097 24.6 1.1 40 43-104 41-81 (154)
28 3kz3_A Repressor protein CI; f 21.0 77 0.0026 18.5 2.7 18 88-105 11-28 (80)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.95 E-value=5.1e-29 Score=220.38 Aligned_cols=96 Identities=40% Similarity=0.716 Sum_probs=84.9
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFG 81 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~ 81 (123)
|+++|++|||+|+++++.+|+++++|+|++|++|||||+++|||+|||+|+|+|+|+||++||+||+
T Consensus 743 V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~~~------------- 809 (842)
T 1n0u_A 743 IYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPL------------- 809 (842)
T ss_dssp HHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCTT-------------
T ss_pred HHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCCcc-------------
Confidence 7899999999999999877778899999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCcCccCcchhH
Q psy13097 82 DKADTENRARKYMDSVRKRKGLPVQDKLVAHAEK 115 (123)
Q Consensus 82 ~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~~~ 115 (123)
+.+|+|++||++||+||||+++. +...++
T Consensus 810 ---~~~~~a~~~~~~~R~rKGl~~~~--p~~~~~ 838 (842)
T 1n0u_A 810 ---DPTSKAGEIVLAARKRHGMKEEV--PGWQEY 838 (842)
T ss_dssp ---CTTSHHHHHHHHHHHHTTCCSSC--CCGGGG
T ss_pred ---chhhHHHHHHHHHHHhCCCCCCC--CCHHHh
Confidence 56799999999999999997554 444443
No 2
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.83 E-value=1.7e-21 Score=167.86 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=72.8
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFG 81 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~ 81 (123)
|+++|++|||+|++++... +.++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+||++.|.+..
T Consensus 553 V~~~L~~RRG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp~~~~~~~~------ 624 (638)
T 3j25_A 553 AYNDAPKYCANIVDTQLKN--NEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRRPN------ 624 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCT--TEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCCSCCCCCCC------
T ss_pred HHHHHHhCCcEEeCeEecC--CeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCccccccCCC------
Confidence 7899999999999998754 57899999999999999999999999999999999999999999998775422
Q ss_pred CCCCcccHHHHHHHHH
Q psy13097 82 DKADTENRARKYMDSV 97 (123)
Q Consensus 82 ~~~~~~~~a~~~v~~i 97 (123)
+.-+.++-++.+|
T Consensus 625 ---~~~d~~~~~~~k~ 637 (638)
T 3j25_A 625 ---SRIDKVRYMFNKI 637 (638)
T ss_dssp ---CCHHHHHHHHHHH
T ss_pred ---ChhhHHHHHHhcc
Confidence 3445566666554
No 3
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.77 E-value=1.2e-19 Score=157.54 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=59.7
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDP 67 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp 67 (123)
+||++|++|||+|++++...+ ..+|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+|+
T Consensus 636 ~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~ 700 (709)
T 4fn5_A 636 DVMGDLNRRRGLIQGMEDTVS--GKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNI 700 (709)
T ss_dssp HHHHHHGGGTCEEEEEEECSS--EEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHH
T ss_pred HHHHHHHhcCCEEeceEecCC--CEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCH
Confidence 378999999999999988654 56799999999999999999999999999999999999999763
No 4
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=2.8e-18 Score=149.41 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=60.9
Q ss_pred CcccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCC
Q psy13097 1 KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDP 67 (123)
Q Consensus 1 ~V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp 67 (123)
.|+++|++|||+|++++...| .++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+|+
T Consensus 630 ~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 694 (704)
T 2rdo_7 630 DVIGDLSRRRGMLKGQESEVT--GVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNV 694 (704)
T ss_pred HHHHHHHhCCceEeCceecCC--eEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccH
Confidence 378999999999999998654 68999999999999999999999999999999999999999874
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=4e-18 Score=148.12 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=59.8
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINID 66 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~d 66 (123)
|+++|++|||+|++++...| .++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++
T Consensus 619 v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~ 681 (693)
T 2xex_A 619 IMGDVTSRRGRVDGMEPRGN--AQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKS 681 (693)
T ss_dssp HHHHHHHTTCEEEEEEEETT--EEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHH
T ss_pred HHHHHHhCCcEeecccccCC--eEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChh
Confidence 78999999999999998754 6899999999999999999999999999999999999999976
No 6
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.70 E-value=5.1e-18 Score=146.73 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=59.8
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINID 66 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~d 66 (123)
|+++|++|||+|++++... ++++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+|
T Consensus 590 v~~~l~~rrG~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~ 652 (665)
T 2dy1_A 590 VLSDLQARRGRILGMEQEG--ALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPH 652 (665)
T ss_dssp HHHHHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHH
T ss_pred HHHHHHHCCCEEeCcEecC--CeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCcc
Confidence 7899999999999999864 58999999999999999999999999999999999999999976
No 7
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.69 E-value=5.3e-18 Score=147.29 Aligned_cols=64 Identities=23% Similarity=0.456 Sum_probs=60.2
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEcccccccCCCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDP 67 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp 67 (123)
|+++|++|||+|++++...| .++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++
T Consensus 620 v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 683 (691)
T 1dar_A 620 VIGDLNARRGQILGMEPRGN--AQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQV 683 (691)
T ss_dssp HHHHHHHTTCCEEEEEEETT--EEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHH
T ss_pred HHHHHHHCCceeecceecCC--eEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhH
Confidence 78999999999999998754 78999999999999999999999999999999999999999764
No 8
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.61 E-value=4.5e-16 Score=126.17 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=60.5
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccceeEccccccc-CCCC
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVI-NIDP 67 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~~F~hw~~v-p~dp 67 (123)
|+++|++|||.|.+++... .+++.|+|++|++|+|||.++|||+|+|.|+|++.|+||+++ |++.
T Consensus 142 Vm~~L~~RRG~i~~m~~~~-~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i 207 (332)
T 3e3x_A 142 IMENIGLRXGELXDMAPDG-KGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNI 207 (332)
T ss_dssp HHHHHHHTTCEEEEEEECS-SSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSC
T ss_pred HHHHHHhhcccccCceECC-CCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCcc
Confidence 7899999999999999863 358899999999999999999999999999999999999999 8884
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.43 E-value=1.2e-13 Score=119.03 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=70.7
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhH-hhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVES-FSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~Es-fGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
|+++|++|||+|.+++...+ +...|+|.+|++|+ |||.++|||+|+|.|+|.++|+||++++--.+ ++...
T Consensus 422 v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~~~~~-------~~~~n 493 (600)
T 2ywe_A 422 IIQLCQEKRGIQKNMTYLDP-NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSDLIKL-------TVLIN 493 (600)
T ss_dssp HHHHHHHTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECCEEEE-------EEEES
T ss_pred HHHHHHHcCcEEeccEEcCC-CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEcccccc-------ccccC
Confidence 78999999999999998543 57899999999999 89999999999999999999999999821111 12222
Q ss_pred CCCCC----------cccHHHHHHHHHHh
Q psy13097 81 GDKAD----------TENRARKYMDSVRK 99 (123)
Q Consensus 81 ~~~~~----------~~~~a~~~v~~iR~ 99 (123)
|++++ ....+++++.+.+.
T Consensus 494 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 494 KKPVDALSFIVHADRAQKFARRVAEKLRE 522 (600)
T ss_dssp SSBCGGGCEEEEGGGHHHHHHHHHHHHHH
T ss_pred CCEeccchhhhhhHHHHHHHHHHHHHHHh
Confidence 33332 45677888888764
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.41 E-value=1.5e-13 Score=118.26 Aligned_cols=89 Identities=16% Similarity=0.314 Sum_probs=70.0
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhH-hhhhHHHHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVES-FSFAPEIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHF 80 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~Es-fGf~~~LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~ 80 (123)
|+++|++|||++++++... +...|+|.+|++|+ |||.++|||+|+|.|+|.++|+||+++.--.+ ++...
T Consensus 418 v~~~~~~rrG~~~~~~~~~--~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~-------~~~~~ 488 (599)
T 3cb4_D 418 VITLCVEKRGVQTNMVYHG--NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRV-------DVLIN 488 (599)
T ss_dssp HHHHHHHTTCEEEEEECCT--TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEE-------EEEET
T ss_pred HHHHHHHcCcEEeCcEecC--CeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEeccccc-------ccccC
Confidence 7889999999999999854 37899999999999 89999999999999999999999999821111 12222
Q ss_pred CCCCC----------cccHHHHHHHHHHh
Q psy13097 81 GDKAD----------TENRARKYMDSVRK 99 (123)
Q Consensus 81 ~~~~~----------~~~~a~~~v~~iR~ 99 (123)
|+++| ....+++++.+.+.
T Consensus 489 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (599)
T 3cb4_D 489 GERVDALALITHRDNSQNRGRELVEKMKD 517 (599)
T ss_dssp TEEEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred CcEecccceeccHHHHHHHHHHHHHHHHh
Confidence 33332 45677888887764
No 11
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=92.26 E-value=0.068 Score=33.45 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=39.1
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccc
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASP 53 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~ 53 (123)
|...|....+.|.+.+-. ..+.+...+|..+.-.|...|..+|+|++.+
T Consensus 22 v~~~L~~~~~~I~~~~Y~---~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 22 ILWLLGQVDGKIINSDVQ---AFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp HHHHHHHTTCEEEEEEEE---EEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred HHHHHHHCCCEEEccccc---CeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 445677888999988763 3478999999999999999999999999854
No 12
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=64.58 E-value=5.6 Score=30.03 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=40.4
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccce
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQ 54 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~ 54 (123)
|...|....+.|++.+-.+ ...+...+|..+.-.|...|..+|+|++.+.
T Consensus 154 v~~~l~~~~~~i~~~~y~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 154 IEALLGQCDGKIINSDYQA---FVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp HHHHHHHTTCEEEEEEESS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHCCCEEEceEecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 4456777888999887632 3678899999999999999999999998543
No 13
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=47.86 E-value=10 Score=28.08 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=36.6
Q ss_pred ccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccc
Q psy13097 3 YAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASP 53 (123)
Q Consensus 3 ~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~ 53 (123)
...|.... .|++.+-.+ .-..+...+|..+.-.|...|..+|+|++.+
T Consensus 143 ~~~l~~~~-~i~~~~y~~--~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 143 YALLEARA-LKAEETYTP--EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp HHHHHHTT-CCEEEEEET--TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHcC-ceeccEEcC--CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 34566666 787776642 1167889999999999999999999999743
No 14
>3n2q_A Sex pheromone staph-CAM373; structural genomics, MCSG, PSI-2, protein structure initiati midwest center for structural genomics; 2.55A {Bacillus cereus}
Probab=46.53 E-value=5.9 Score=31.16 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=26.8
Q ss_pred chhhhhhcCCCCCcccHHHHHHHHHHhhcCCCCcCccCcc
Q psy13097 73 TEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAH 112 (123)
Q Consensus 73 ~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~ 112 (123)
++++++..| ..+|.++|..+|++|||+ +..|+..
T Consensus 102 s~~~~~~~G-----k~~A~~iv~rlR~~~~l~-~vPI~ia 135 (287)
T 3n2q_A 102 SNEEAMSKG-----TEVAKQLIEAINKNDKYN-KSPITFA 135 (287)
T ss_dssp CHHHHHHHH-----HHHHHHHHHHHHHCTTCC-CCCEEEE
T ss_pred CHHHHHHHH-----HHHHHHHHHHHHhcCCCC-CCCEEEE
Confidence 578888877 568999999999999994 5555544
No 15
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=44.87 E-value=9.2 Score=24.39 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=14.7
Q ss_pred ccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCC
Q psy13097 58 SHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPV 105 (123)
Q Consensus 58 ~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~ 105 (123)
.||-.++.+|+....+++ ......+.|.++|+.+||..
T Consensus 7 ~~~~~~~~~~~~~~M~~~----------~~~~ig~~lr~~R~~~gltq 44 (99)
T 3g5g_A 7 HHHHSSGLVPRGSHMESF----------LLSKVSFVIKKIRLEKGMTQ 44 (99)
T ss_dssp ---------------CCH----------HHHHHHHHHHHHHHHTTCCH
T ss_pred cccccCCCCCccccccHH----------HHHHHHHHHHHHHHHcCCCH
Confidence 456667777664333222 12234577889999999963
No 16
>4hn3_A LMO1757 protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 2.05A {Listeria monocytogenes}
Probab=40.31 E-value=5.1 Score=32.38 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=34.6
Q ss_pred ccccc-CCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCCcCccCcc
Q psy13097 59 HWEVI-NIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAH 112 (123)
Q Consensus 59 hw~~v-p~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~ 112 (123)
.|+.- .|.++...-++++++..| ..+|.++|..+|+.|||+ +..|+..
T Consensus 152 yy~~~~~G~~y~~~Is~~e~~~~G-----k~~A~~iv~rlR~~~~l~-nvPI~ia 200 (350)
T 4hn3_A 152 YYQKEKYGDTYEQPISDSELLAQG-----KEMSATVLNRIRQTKGLE-NVPVTIA 200 (350)
T ss_dssp EECSSTTCCCEEEECCHHHHHHHH-----HHHHHHHHHHHTTSTTCS-SSCEEEE
T ss_pred eeeeccCCceeeEEcCHHHHHHHH-----HHHHHHHHHHHHhcCCCC-CCCEEEE
Confidence 34433 355565556788899988 478999999999999995 5555443
No 17
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=38.49 E-value=15 Score=23.24 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCC
Q psy13097 71 PRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPV 105 (123)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~ 105 (123)
|.+++.+.+.++.- +-++|+..|.+-|+.-|++.
T Consensus 37 PlSD~~I~~~L~~~-Gi~IaRRTVaKYRe~l~Ip~ 70 (76)
T 2ahq_A 37 PYSDQEIANILKEK-GFKVARRTVAKYREMLGIPS 70 (76)
T ss_dssp CCCHHHHHHHHTTT-SSCCCHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHHHHHHHcCCCc
Confidence 33788887777644 67899999999999999864
No 18
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=34.50 E-value=21 Score=25.19 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCC
Q psy13097 43 IRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLP 104 (123)
Q Consensus 43 LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~ 104 (123)
.|..+.|+..-.|.|.||.+|.. ....+|+.+++.|-|+.
T Consensus 36 VR~~~~g~~V~~L~ye~y~~ma~----------------------~~l~~I~~ea~~r~~~~ 75 (149)
T 2q5w_E 36 VREWTKGVKTEYLEYEAYIPMAE----------------------KKLAQIGDEINEKWPGT 75 (149)
T ss_dssp CCSCSSSSCEEEEEEEECHHHHH----------------------HHHHHHHHHHHHHSTTC
T ss_pred ECCCCCCCcEEEEEEEeCchHHH----------------------HHHHHHHHHHHHhCCCc
Confidence 46667788888999999987742 35788999999998864
No 19
>3ib5_A Sex pheromone precursor; YP_536235.1, structural genomics, joint center for structural genomics, JCSG; 1.35A {Lactobacillus salivarius UCC118}
Probab=33.49 E-value=7.6 Score=31.34 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=31.5
Q ss_pred CCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCCcCccCcch
Q psy13097 65 IDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAHA 113 (123)
Q Consensus 65 ~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~~ 113 (123)
|.++...-++++++..| ..+|.++|..+|++|| .+..|+...
T Consensus 153 G~~~~~~Is~~~~~~~G-----k~~A~~iv~rlR~~~~--kdvPI~ial 194 (348)
T 3ib5_A 153 GATYSTTISKEKRIEEG-----KIAAKKVLARVRQKVG--NNVPIVIAM 194 (348)
T ss_dssp CCEEEEECCHHHHHHHH-----HHHHHHHHHHHHHHHC--SSSCEEEEE
T ss_pred CccceeEcCHHHHHHHH-----HHHHHHHHHHHHhccC--CCCCEEEEE
Confidence 44455555788888877 5689999999999999 566665543
No 20
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=33.00 E-value=17 Score=25.59 Aligned_cols=40 Identities=8% Similarity=0.151 Sum_probs=24.6
Q ss_pred HHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCC
Q psy13097 43 IRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLP 104 (123)
Q Consensus 43 LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~ 104 (123)
.|..+.|+..-.|.|+||.+|. .....+|+.+++.|-|+.
T Consensus 44 VR~~~~g~~V~~Leye~y~~ma----------------------~~~l~~I~~ea~~r~~~~ 83 (147)
T 2wp4_A 44 VRDHNAGHDVTRLFYEAYPPMV----------------------IRTLMSIIGRCEDKAEGV 83 (147)
T ss_dssp CCC-------CEEEEECCHHHH----------------------HHHHHHHHHHHHTSSTTC
T ss_pred ECCCCCCCcEEEEEEEeCchHH----------------------HHHHHHHHHHHHHhCCCc
Confidence 3555567777788888887764 235788999999998763
No 21
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=32.62 E-value=26 Score=26.90 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=37.8
Q ss_pred cccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCcccee
Q psy13097 2 LYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQL 55 (123)
Q Consensus 2 V~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~ 55 (123)
+++.|.+-.|.|.+++-. + + ..+.+.+|-.---.|.+.|+..|.|.|...+
T Consensus 188 ~~~~l~~~~~~v~~ee~~-~-~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 188 LKEKLKPLIKVIESEDYG-Q-Q-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp HTTTHHHHTCEEEEECCS-S-B-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred HHHHHHHhhCcceeeecc-C-C-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 345566656888877653 3 3 5678899988766789999999999986543
No 22
>2qx2_A Sex pheromone staph-CAM373; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 1.90A {Staphylococcus aureus subsp}
Probab=31.19 E-value=7.9 Score=31.19 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCCCcCccCcc
Q psy13097 65 IDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAH 112 (123)
Q Consensus 65 ~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~~~~~i~~~ 112 (123)
|.++....++++++..| ..+|.++|..+|+++||+ +..|+..
T Consensus 150 G~~~~~~i~~~e~~~~G-----k~~A~~il~~lR~~~~lk-~VPI~ia 191 (344)
T 2qx2_A 150 GPTFSKKLDDSEVKKQG-----KQMASEILSRLRENDDLK-DIPIHFA 191 (344)
T ss_dssp SCCEEEECCHHHHHHHH-----HHHHHHHHHHHHTSGGGS-SSCEEEE
T ss_pred CcceeecCCHHHHHHHH-----HHHHHHHHHHHHhhcccC-CCCEEEE
Confidence 55555556788888877 567999999999999993 5555443
No 23
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=29.37 E-value=19 Score=25.34 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCC
Q psy13097 43 IRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGL 103 (123)
Q Consensus 43 LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL 103 (123)
.|..+.|+..-.|.|.||.+|.. ....+|+.+++.|-||
T Consensus 38 VR~~~~g~~V~~L~ye~Y~~ma~----------------------~~l~~I~~ea~~r~~~ 76 (150)
T 1fm0_E 38 VRNHNLGDSVNALTLEHYPGMTE----------------------KALAEIVDEARNRWPL 76 (150)
T ss_dssp CC-------CCCEEEEECHHHHH----------------------HHHHHHHHHHHHHSCE
T ss_pred ECCCCCCCcEeEEEEEecchHHH----------------------HHHHHHHHHHHHhCCC
Confidence 35556677778899999987742 3578899999999775
No 24
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.80 E-value=50 Score=25.37 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=34.4
Q ss_pred ccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCccce
Q psy13097 3 YAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQ 54 (123)
Q Consensus 3 ~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~ 54 (123)
++.|. .-|.|.+++-..+ +...+.+.+|-.---.|.+.|++.|.|.|...
T Consensus 200 ~~~l~-~~~~v~~ee~~~d-gs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 200 YGVIS-NFGKITNEEWQND-GSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp HHHHH-HHCEEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHH-hhCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 44453 3478877765432 33457788988765678999999999998653
No 25
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=24.12 E-value=27 Score=24.32 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHhhcCCCccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCC
Q psy13097 43 IRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGL 103 (123)
Q Consensus 43 LRs~T~G~a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL 103 (123)
.|..+.|+..-.|.|+||.+|-. ....+|..+++.|-+|
T Consensus 41 VR~~~~g~~V~~L~ye~y~~ma~----------------------~~l~~I~~ea~~r~~l 79 (135)
T 4ap8_A 41 TRNNFEGKKVISLEYEAYLPMAE----------------------NEVRKICSDIRQKWPV 79 (135)
T ss_dssp CCSEETTEEEEEEEEEEEETHHH----------------------HHHHHHHHHHHHHSCE
T ss_pred ECCCCCCCcEEEEEEEecchHHH----------------------HHHHHHHHHHHHhcCC
Confidence 46667788888899999987742 3567889999988775
No 26
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=23.27 E-value=46 Score=25.36 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=34.3
Q ss_pred ccccccCCeEEeeeeecCCCceEEEEEEcChhhHhhhhHHHHhhcCCCcccee
Q psy13097 3 YAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQL 55 (123)
Q Consensus 3 ~~~L~~RRG~I~~~~~~~gt~~~~I~A~lPv~EsfGf~~~LRs~T~G~a~~~~ 55 (123)
++.|. .-|.|..++-.. .+.....+.+|-.---.|.+.|+..|.|.+....
T Consensus 185 ~~~l~-~~~~v~~ee~~~-dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 185 ISALY-NFGGVTREEWQR-DGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp HHHHH-HHCCEEEEEECT-TSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHH-hhCeeeeecccC-CCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 44453 346777776533 2334567889887555688999999999986543
No 27
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=22.77 E-value=28 Score=24.61 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHhhcCCC-ccceeEcccccccCCCCCCCCCchhhhhhcCCCCCcccHHHHHHHHHHhhcCCC
Q psy13097 43 IRKSTSGL-ASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLP 104 (123)
Q Consensus 43 LRs~T~G~-a~~~~~F~hw~~vp~dp~~~~~~~~~~~~~~~~~~~~~~a~~~v~~iR~RKGL~ 104 (123)
.|..+.|+ ..-.|.|+||.+|. .....+|+.+++.|-||.
T Consensus 41 VR~~~~g~~~V~~Leye~y~~ma----------------------e~~l~~I~~ea~~r~~l~ 81 (154)
T 2omd_A 41 PRNAPEDGGNIEALEYEAYPEMA----------------------IKEMEKIRQETIEKFGVK 81 (154)
T ss_dssp CCCCGGGTSCEEEEEEEECHHHH----------------------HHHHHHHHHHHHHHHCCS
T ss_pred ECCCCCCcccEEEEEEEeCchHH----------------------HHHHHHHHHHHHHhCCCc
Confidence 35556677 67788889987764 235788999999998863
No 28
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.95 E-value=77 Score=18.48 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHhhcCCCC
Q psy13097 88 NRARKYMDSVRKRKGLPV 105 (123)
Q Consensus 88 ~~a~~~v~~iR~RKGL~~ 105 (123)
....+.+...|+++||..
T Consensus 11 ~~l~~~l~~~r~~~gltq 28 (80)
T 3kz3_A 11 RRLKAIWEKKKNELGLSY 28 (80)
T ss_dssp HHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHcCCCH
Confidence 345788899999999863
Done!