RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13097
         (123 letters)



>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 117

 Score = 74.6 bits (183), Expect = 3e-19
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 24/117 (20%)

Query: 1   KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHW 60
            +Y+VL ++ G++V  +   G+  FTV+AYLPV ESF F  E+R++T G A PQ+VF HW
Sbjct: 17  GIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHW 76

Query: 61  EVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQ--------DKL 109
             +                  D  D  ++A + + + RKR G+  +        DKL
Sbjct: 77  STL----------------GSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 117


>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus
          thermophilus [TaxId: 274]}
          Length = 89

 Score = 51.0 bits (122), Expect = 3e-10
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 3  YAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWE 61
             L  R G+I+   +        ++A++P+ E F +A ++R  T G  S  + F H++
Sbjct: 22 IGDLNARRGQIL--GMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQ 78


>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
          thermophilus, EF-G-2 [TaxId: 274]}
          Length = 96

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 1  KLYAVLGRRHGRIVYGDVTQGSVTFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHW 60
           + + L  R GRI+  +           A +P+ E   +   +   T G  +  L FSH+
Sbjct: 20 DVLSDLQARRGRILGMEQEGALSVVH--AEVPLAEVLEYYKALPGLTGGAGAYTLEFSHY 77

Query: 61 E 61
           
Sbjct: 78 A 78


>d2pzza1 d.77.1.2 (A:2-134) Hypotheical protein MJ1564
           {Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 133

 Score = 25.2 bits (55), Expect = 1.6
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 64  NIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPV-QDKLVAHAEKQRTV 119
           NI P  +    E+   FG+         K  + +R +  L   +  L     +  T 
Sbjct: 24  NIFPKAKLTFIEKDNEFGEWEGKTKSVEKLKELLRSQSILDAARMVLEKGMTENATK 80


>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
           51453]}
          Length = 314

 Score = 24.1 bits (51), Expect = 6.1
 Identities = 10/62 (16%), Positives = 19/62 (30%)

Query: 42  EIRKSTSGLASPQLVFSHWEVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRK 101
           +   +   + S  L+ + +  +NID  W  +      H    A         +       
Sbjct: 30  KFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHAL 89

Query: 102 GL 103
           GL
Sbjct: 90  GL 91


>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}
          Length = 124

 Score = 23.6 bits (51), Expect = 6.2
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 17 DVTQGSVTFTVQA-YL-----PVVESFSFAPEIRKSTSGLASPQLVFSHWEVIN 64
          DV+   +   VQ  Y+     P  + F FA  I        + QL+   W + +
Sbjct: 2  DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITD 55


>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
           {Clostridium perfringens [TaxId: 1502]}
          Length = 426

 Score = 23.6 bits (51), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 24  TFTVQAYLPVVESFSFAPEIRKSTSGLASPQLVFSHWEVINIDPY 68
           T  V+ YLP V+     PE++   +GL     +    + I IDPY
Sbjct: 66  TSQVEHYLPFVKE---YPELKAIFTGL-----INRQVKCIFIDPY 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,473
Number of extensions: 19527
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 11
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)