BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13098
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C0D5|ETUD1_MOUSE Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus
musculus GN=Eftud1 PE=2 SV=1
Length = 1127
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/67 (67%), Positives = 58/67 (86%)
Query: 15 FFWFQVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQ 74
F ++VI DP+W P TEEEYLHFG+KAD+EN+ARKYM++VRKRKGL V++K+V HAEKQ
Sbjct: 1061 FSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQ 1120
Query: 75 RTVKRNK 81
RT+ +NK
Sbjct: 1121 RTLSKNK 1127
>sp|Q7Z2Z2|ETUD1_HUMAN Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo
sapiens GN=EFTUD1 PE=1 SV=2
Length = 1120
Score = 103 bits (256), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 58/67 (86%)
Query: 15 FFWFQVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQ 74
F +++I DP+W P TEEEYLHFG+KAD+EN+ARKYM++VRKRKGL V++K+V HAEKQ
Sbjct: 1054 FSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQ 1113
Query: 75 RTVKRNK 81
RT+ +NK
Sbjct: 1114 RTLSKNK 1120
>sp|P53893|RIA1_YEAST Ribosome assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RIA1 PE=1 SV=1
Length = 1110
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 52/66 (78%)
Query: 15 FFWFQVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQ 74
F F+ I++DP+W P TEEE GD AD EN ARK+M+++R+RKGL +++K+V +AEKQ
Sbjct: 1045 FSGFECIDLDPFWVPTTEEELEELGDTADRENIARKHMNAIRRRKGLFIEEKVVENAEKQ 1104
Query: 75 RTVKRN 80
RT+K+N
Sbjct: 1105 RTLKKN 1110
>sp|O74945|RIA1_SCHPO Ribosome assembly protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ria1 PE=3 SV=1
Length = 1000
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 15 FFWFQVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQ 74
F F++++ +P+W P TEEE G+ AD EN A++YM +VRKRKGL V+ K+V AEKQ
Sbjct: 936 FHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGLLVEQKIVEKAEKQ 995
Query: 75 RTVK 78
RT+K
Sbjct: 996 RTLK 999
>sp|Q488M4|AMPA_COLP3 Probable cytosol aminopeptidase OS=Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) GN=pepA PE=3 SV=1
Length = 501
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 7 GSVDGLRYFFWFQVINIDPYWEPRTEEEYLHFG---------DKADTENRARKYMDSVRK 57
GS++ + + V D YW+ R E G KA+ RK + +V
Sbjct: 104 GSMEAVCFLSELHVKGRDIYWKVRQAVEAAQDGLYSFDSLKTRKAEARRPLRKVVFNVPT 163
Query: 58 RKGLPVQDKLVAHA 71
R+ LP+ ++ V+HA
Sbjct: 164 RRELPIGERAVSHA 177
>sp|P03589|1A_AMVLE Replication protein 1a OS=Alfalfa mosaic virus (strain 425 /
isolate Leiden) GN=ORF1a PE=3 SV=1
Length = 1126
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 24 DPYWEPRTEEEYL---HFGDKADTENRARKYMDSVRKRK--GLPVQDKLVAHAEK 73
DP + E+ Y H G+ D N AR +D +RK+K L + K V A+K
Sbjct: 584 DPVYFQSLEDVYYAEWHQGNAIDASNYARTLLDDIRKQKEESLKAKAKEVEDAQK 638
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,940,759
Number of Sequences: 539616
Number of extensions: 1109306
Number of successful extensions: 3079
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3075
Number of HSP's gapped (non-prelim): 8
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)