Query psy13098
Match_columns 81
No_of_seqs 120 out of 426
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:28:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 99.5 4.1E-15 1.4E-19 122.3 4.0 58 2-77 785-842 (842)
2 3j25_A Tetracycline resistance 98.5 7.5E-08 2.6E-12 77.0 3.6 45 2-55 593-637 (638)
3 4fn5_A EF-G 1, elongation fact 97.7 3.5E-06 1.2E-10 67.9 -1.0 25 2-26 677-701 (709)
4 2rdo_7 EF-G, elongation factor 96.9 0.00028 9.6E-09 57.1 1.4 26 1-26 670-695 (704)
5 2dy1_A Elongation factor G; tr 96.4 0.00065 2.2E-08 54.5 0.4 25 2-26 630-654 (665)
6 2xex_A Elongation factor G; GT 96.1 0.00066 2.2E-08 54.8 -1.0 25 2-26 659-683 (693)
7 1dar_A EF-G, elongation factor 96.0 0.00074 2.5E-08 54.5 -1.0 25 2-26 660-684 (691)
8 3e3x_A BIPA; MCSG,PSI2, struct 94.2 0.013 4.4E-07 44.6 1.0 25 2-26 183-208 (332)
9 3g5g_A Regulatory protein; tra 79.7 0.87 3E-05 27.7 1.8 40 15-64 6-45 (99)
10 2ywe_A GTP-binding protein LEP 72.9 1.4 4.8E-05 35.3 1.6 50 2-57 464-522 (600)
11 4hn3_A LMO1757 protein; struct 66.7 1.2 4.2E-05 34.1 0.1 36 22-62 158-193 (350)
12 3cb4_D GTP-binding protein LEP 63.7 1.8 6.2E-05 34.6 0.5 50 2-57 459-517 (599)
13 3jvi_A Protein tyrosine phosph 59.8 9.3 0.00032 25.2 3.5 38 17-61 122-160 (161)
14 1dgn_A Iceberg (protease inhib 56.8 6 0.00021 24.1 2.0 29 31-60 35-64 (89)
15 3ib5_A Sex pheromone precursor 53.9 2.9 9.8E-05 32.0 0.1 33 23-60 153-185 (348)
16 3n2q_A Sex pheromone staph-CAM 51.9 6 0.0002 29.5 1.6 26 31-61 102-127 (287)
17 2qx2_A Sex pheromone staph-CAM 51.2 3.1 0.00011 31.8 -0.1 34 23-61 150-183 (344)
18 2ahq_A Sigma-54, RNA polymeras 47.7 11 0.00036 22.8 2.0 39 23-63 32-70 (76)
19 1nha_A TFIIF-alpha, transcript 30.1 6 0.00021 24.7 -1.2 50 26-77 15-65 (82)
20 3kz3_A Repressor protein CI; f 29.7 26 0.0009 19.4 1.6 18 47-64 12-29 (80)
21 2lqt_A Coiled-coil-helix-coile 27.6 49 0.0017 20.6 2.7 21 53-75 55-75 (85)
22 2p1h_A APAF-1, apoptotic prote 27.3 31 0.0011 20.3 1.7 30 30-60 37-66 (94)
23 3qnk_A Putative lipoprotein; a 26.0 35 0.0012 25.9 2.2 17 47-63 410-426 (517)
24 3jq1_A SUSD superfamily protei 25.5 68 0.0023 24.2 3.7 18 46-63 378-395 (481)
25 3otn_A SUSD superfamily protei 24.9 40 0.0014 25.4 2.3 18 46-63 380-397 (482)
26 3iv0_A SUSD homolog; NP_809186 23.1 45 0.0015 25.1 2.3 17 47-63 387-403 (481)
27 1i27_A Transcription factor II 21.7 9.5 0.00032 23.3 -1.4 49 27-77 7-56 (73)
28 3rjp_A COVR; winged helix-turn 21.3 1.3E+02 0.0043 17.2 3.8 31 30-60 42-75 (96)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.52 E-value=4.1e-15 Score=122.32 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=51.7
Q ss_pred CcccCCcceeeceeccceecCCCCCCCCcchHHHhhcCCCCCccCHHHHHHHHHHHhcCCCcccccCcchhhHHhh
Q psy13098 2 NLCCRGSVDGLRYFFWFQVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQDKLVAHAEKQRTV 77 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l~gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRKGL~~~ekiv~~aekqr~L 77 (81)
|..|+|+|+++|.||||+.+|+||+ +.+|+|++||++||+|||| .+.+|...+|.++|
T Consensus 785 Rs~T~G~g~~~~~F~~y~~vp~~~~----------------~~~~~a~~~~~~~R~rKGl--~~~~p~~~~~~d~~ 842 (842)
T 1n0u_A 785 RQATGGQAFPQMVFDHWSTLGSDPL----------------DPTSKAGEIVLAARKRHGM--KEEVPGWQEYYDKL 842 (842)
T ss_dssp HHHTTTCCEEEEEEEEEEECCSCTT----------------CTTSHHHHHHHHHHHHTTC--CSSCCCGGGGCCCC
T ss_pred HhhCCCCceEEEEeccceeCCCCcc----------------chhhHHHHHHHHHHHhCCC--CCCCCCHHHhccCC
Confidence 6789999999999999999999999 5679999999999999999 57777777776654
No 2
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.47 E-value=7.5e-08 Score=76.98 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=35.4
Q ss_pred CcccCCcceeeceeccceecCCCCCCCCcchHHHhhcCCCCCccCHHHHHHHHH
Q psy13098 2 NLCCRGSVDGLRYFFWFQVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSV 55 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l~gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~i 55 (81)
|..|+|+|++++.|+||+.+|+||+++|.+ +.+..+.+|-++.+|
T Consensus 593 rs~T~G~a~~~~~f~~y~~vpgdp~~~~~~---------~~~~~d~~~~~~~k~ 637 (638)
T 3j25_A 593 TFFTNGRSVCLTELKGYHVTTGEPVCQPRR---------PNSRIDKVRYMFNKI 637 (638)
T ss_dssp HHTTTTCCEEECCCCCCCCCCSCCSCCCCC---------CCCCHHHHHHHHHHH
T ss_pred HhhCCCcEEEEEEECceEECCCCccccccC---------CCChhhHHHHHHhcc
Confidence 678999999999999999999999998762 223444566666554
No 3
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.70 E-value=3.5e-06 Score=67.87 Aligned_cols=25 Identities=8% Similarity=-0.076 Sum_probs=23.0
Q ss_pred CcccCCcceeeceeccceecCCCCC
Q psy13098 2 NLCCRGSVDGLRYFFWFQVINIDPY 26 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l~gDP~ 26 (81)
|..|+|+|++|+.||||+.+|+||.
T Consensus 677 Rs~T~G~a~~~~~F~~y~~vp~~~~ 701 (709)
T 4fn5_A 677 RSMSQGRASYSMEFSKYAEAPSNIV 701 (709)
T ss_dssp HHHTTTCCEEECCEEEEEECCHHHH
T ss_pred HhhCCCeEEEEEEECCcccCCcCHH
Confidence 6789999999999999999998775
No 4
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.86 E-value=0.00028 Score=57.13 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=23.6
Q ss_pred CCcccCCcceeeceeccceecCCCCC
Q psy13098 1 MNLCCRGSVDGLRYFFWFQVINIDPY 26 (81)
Q Consensus 1 ~~~~T~G~A~~ql~FsHW~~l~gDP~ 26 (81)
+|..|+|+|++++.|+||+.+|+|+.
T Consensus 670 Lrs~T~G~~~~~~~f~~y~~~~~~~~ 695 (704)
T 2rdo_7 670 LRSLTKGRASYTMEFLKYDEAPSNVA 695 (704)
T ss_pred hHhhcCCceEEEEEeCcceECCccHH
Confidence 36789999999999999999998875
No 5
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.36 E-value=0.00065 Score=54.50 Aligned_cols=25 Identities=8% Similarity=-0.164 Sum_probs=22.3
Q ss_pred CcccCCcceeeceeccceecCCCCC
Q psy13098 2 NLCCRGSVDGLRYFFWFQVINIDPY 26 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l~gDP~ 26 (81)
|..|+|+|++++.|+||+.+|+|+.
T Consensus 630 rs~T~G~~~~~~~f~~y~~~~~~~~ 654 (665)
T 2dy1_A 630 PGLTGGAGAYTLEFSHYAEVPPHLA 654 (665)
T ss_dssp HHHHTTCCEEEEEEEEEEECCHHHH
T ss_pred HhhcCCcEEEEEEeCceeECCccHH
Confidence 5789999999999999999987763
No 6
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.08 E-value=0.00066 Score=54.81 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=22.6
Q ss_pred CcccCCcceeeceeccceecCCCCC
Q psy13098 2 NLCCRGSVDGLRYFFWFQVINIDPY 26 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l~gDP~ 26 (81)
|..|+|+|++++.|+||+.+|+|+.
T Consensus 659 rs~T~G~~~~~~~f~~y~~~~~~~~ 683 (693)
T 2xex_A 659 RSNTQGRGTYTMYFDHYAEVPKSIA 683 (693)
T ss_dssp HHHTTTCCEEEEEEEEEEECCHHHH
T ss_pred HHhcCCceEEEEEeCcceECChhHH
Confidence 6789999999999999999997764
No 7
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.01 E-value=0.00074 Score=54.51 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=22.8
Q ss_pred CcccCCcceeeceeccceecCCCCC
Q psy13098 2 NLCCRGSVDGLRYFFWFQVINIDPY 26 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l~gDP~ 26 (81)
|..|+|+|++++.|+||+.+|+|+.
T Consensus 660 rs~T~G~~~~~~~f~~y~~~~~~~~ 684 (691)
T 1dar_A 660 RSKTQGRGSFVMFFDHYQEVPKQVQ 684 (691)
T ss_dssp HHHTTTCCEEEEEEEEEEECCHHHH
T ss_pred HHhcCCceEEEEEeCcceECChhHH
Confidence 6789999999999999999998765
No 8
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=94.15 E-value=0.013 Score=44.60 Aligned_cols=25 Identities=12% Similarity=-0.218 Sum_probs=22.4
Q ss_pred CcccCCcceeeceeccceec-CCCCC
Q psy13098 2 NLCCRGSVDGLRYFFWFQVI-NIDPY 26 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l-~gDP~ 26 (81)
+..|+|.|+.++.|+||+.+ |||.-
T Consensus 183 rS~T~G~g~~~~~F~~Y~p~~pg~i~ 208 (332)
T 3e3x_A 183 MTLTSGSGLLYHTFDHYGPHXGGNIG 208 (332)
T ss_dssp HHHTTTCCEEEEEEEEEEECCCCSCS
T ss_pred hhhCCCcEEEEEEecCceEcCCCccc
Confidence 56899999999999999999 88864
No 9
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=79.73 E-value=0.87 Score=27.67 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=15.3
Q ss_pred eccceecCCCCCCCCcchHHHhhcCCCCCccCHHHHHHHHHHHhcCCCcc
Q psy13098 15 FFWFQVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPVQ 64 (81)
Q Consensus 15 FsHW~~l~gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRKGL~~~ 64 (81)
.-||..++-+|+...++++....+ .+.+..+|+.+||...
T Consensus 6 ~~~~~~~~~~~~~~~M~~~~~~~i----------g~~lr~~R~~~gltq~ 45 (99)
T 3g5g_A 6 HHHHHSSGLVPRGSHMESFLLSKV----------SFVIKKIRLEKGMTQE 45 (99)
T ss_dssp ----------------CCHHHHHH----------HHHHHHHHHHTTCCHH
T ss_pred ccccccCCCCCccccccHHHHHHH----------HHHHHHHHHHcCCCHH
Confidence 347888898998776644433333 3667889999999643
No 10
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=72.85 E-value=1.4 Score=35.34 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=33.5
Q ss_pred CcccCCcceeeceeccceec---------CCCCCCCCcchHHHhhcCCCCCccCHHHHHHHHHHH
Q psy13098 2 NLCCRGSVDGLRYFFWFQVI---------NIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRK 57 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l---------~gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRk 57 (81)
|..|+|.|+..+.|+||+.+ .|+|.|...+ |-+ .......+|.++.+.+.
T Consensus 464 ~s~T~G~g~~~~~f~~y~~~~~~~~~~~~ng~~v~~~~~---~~~---~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 464 KSISRGFASYDYEFIGYRPSDLIKLTVLINKKPVDALSF---IVH---ADRAQKFARRVAEKLRE 522 (600)
T ss_dssp HHHHTTCCEEEEEEEEEEECCEEEEEEEESSSBCGGGCE---EEE---GGGHHHHHHHHHHHHHH
T ss_pred hhcCCCeEEEEEEeccceEccccccccccCCCEeccchh---hhh---hHHHHHHHHHHHHHHHh
Confidence 56799999999999999988 6666532210 000 01245577888888764
No 11
>4hn3_A LMO1757 protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 2.05A {Listeria monocytogenes}
Probab=66.71 E-value=1.2 Score=34.06 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=30.8
Q ss_pred CCCCCCCCcchHHHhhcCCCCCccCHHHHHHHHHHHhcCCC
Q psy13098 22 NIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLP 62 (81)
Q Consensus 22 ~gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRKGL~ 62 (81)
.|.++-...++++++..|+ ..|.++|..+|+.+||.
T Consensus 158 ~G~~y~~~Is~~e~~~~Gk-----~~A~~iv~rlR~~~~l~ 193 (350)
T 4hn3_A 158 YGDTYEQPISDSELLAQGK-----EMSATVLNRIRQTKGLE 193 (350)
T ss_dssp TCCCEEEECCHHHHHHHHH-----HHHHHHHHHHTTSTTCS
T ss_pred CCceeeEEcCHHHHHHHHH-----HHHHHHHHHHHhcCCCC
Confidence 3677777789999999874 58999999999999994
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=63.72 E-value=1.8 Score=34.59 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=32.4
Q ss_pred CcccCCcceeeceeccceec---------CCCCCCCCcchHHHhhcCCCCCccCHHHHHHHHHHH
Q psy13098 2 NLCCRGSVDGLRYFFWFQVI---------NIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRK 57 (81)
Q Consensus 2 ~~~T~G~A~~ql~FsHW~~l---------~gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRk 57 (81)
|..|+|.|+..+.|+||+.. .|+|.|... -|-+ .......+|+++.+.+.
T Consensus 459 ~s~T~G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~~~~---~~~~---~~~~~~~~~~~~~~~~~ 517 (599)
T 3cb4_D 459 KSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALA---LITH---RDNSQNRGRELVEKMKD 517 (599)
T ss_dssp HHHTTSCCEEEEEEEEEEECCEEEEEEEETTEEEEEEE---EEEE---GGGHHHHHHHHHHHHHH
T ss_pred hhcCCcEEEEEEEecCceEecccccccccCCcEecccc---eecc---HHHHHHHHHHHHHHHHh
Confidence 56799999999999999988 555543210 0000 00245577888888764
No 13
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=59.78 E-value=9.3 Score=25.23 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=20.5
Q ss_pred cceecCCCCCCCCcchHHHhh-cCCCCCccCHHHHHHHHHHHhcCC
Q psy13098 17 WFQVINIDPYWEPRTEEEYLH-FGDKADTENRARKYMDSVRKRKGL 61 (81)
Q Consensus 17 HW~~l~gDP~~~~~t~ee~e~-~g~~~~~~n~Ar~~v~~iRkRKGL 61 (81)
||+ || |||.... +..+. +- ........++..++...+|
T Consensus 122 ~~~-I~-DPy~~~~--~~f~~~~~---~I~~~~~~ll~~l~~~~~~ 160 (161)
T 3jvi_A 122 TTE-VP-DPYYGGE--KGFHRVID---ILEDACENLIIKLEEGKLI 160 (161)
T ss_dssp CSS-CC-CCC--CH--HHHHHHHH---HHHHHHHHHHHHHHHSSCC
T ss_pred CCC-Cc-CCCCCCH--HHHHHHHH---HHHHHHHHHHHHHHhccCC
Confidence 788 55 9997541 22211 10 1233467788888877766
No 14
>1dgn_A Iceberg (protease inhibitor); antiparallel six-helix bundle, greek-KEY, hydrolase inhibitor; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=56.85 E-value=6 Score=24.12 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred chHHHhhcCCC-CCccCHHHHHHHHHHHhcC
Q psy13098 31 TEEEYLHFGDK-ADTENRARKYMDSVRKRKG 60 (81)
Q Consensus 31 t~ee~e~~g~~-~~~~n~Ar~~v~~iRkRKG 60 (81)
+++|.+...+. ......||.+|+.|+ +||
T Consensus 35 n~~E~e~i~~~~~t~~dkar~LiD~V~-~KG 64 (89)
T 1dgn_A 35 SQEDMNKVRDENDTVMDKARVLIDLVT-GKG 64 (89)
T ss_dssp CHHHHHHHHTCCSSHHHHHHHHHHHHH-HTC
T ss_pred cHHHHHHHHhccCchHHHHHHHHHHHH-HHh
Confidence 57888886665 455789999999994 676
No 15
>3ib5_A Sex pheromone precursor; YP_536235.1, structural genomics, joint center for structural genomics, JCSG; 1.35A {Lactobacillus salivarius UCC118}
Probab=53.88 E-value=2.9 Score=32.03 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=28.5
Q ss_pred CCCCCCCcchHHHhhcCCCCCccCHHHHHHHHHHHhcC
Q psy13098 23 IDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKG 60 (81)
Q Consensus 23 gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRKG 60 (81)
|.++-+..++++++..|+ ..|.++|..+|+++|
T Consensus 153 G~~~~~~Is~~~~~~~Gk-----~~A~~iv~rlR~~~~ 185 (348)
T 3ib5_A 153 GATYSTTISKEKRIEEGK-----IAAKKVLARVRQKVG 185 (348)
T ss_dssp CCEEEEECCHHHHHHHHH-----HHHHHHHHHHHHHHC
T ss_pred CccceeEcCHHHHHHHHH-----HHHHHHHHHHHhccC
Confidence 667777789999999874 589999999999998
No 16
>3n2q_A Sex pheromone staph-CAM373; structural genomics, MCSG, PSI-2, protein structure initiati midwest center for structural genomics; 2.55A {Bacillus cereus}
Probab=51.86 E-value=6 Score=29.45 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.9
Q ss_pred chHHHhhcCCCCCccCHHHHHHHHHHHhcCC
Q psy13098 31 TEEEYLHFGDKADTENRARKYMDSVRKRKGL 61 (81)
Q Consensus 31 t~ee~e~~g~~~~~~n~Ar~~v~~iRkRKGL 61 (81)
++++++..| ...|.++|..+|+++||
T Consensus 102 s~~~~~~~G-----k~~A~~iv~rlR~~~~l 127 (287)
T 3n2q_A 102 SNEEAMSKG-----TEVAKQLIEAINKNDKY 127 (287)
T ss_dssp CHHHHHHHH-----HHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHH-----HHHHHHHHHHHHhcCCC
Confidence 778888886 45899999999999999
No 17
>2qx2_A Sex pheromone staph-CAM373; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 1.90A {Staphylococcus aureus subsp}
Probab=51.21 E-value=3.1 Score=31.78 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=29.2
Q ss_pred CCCCCCCcchHHHhhcCCCCCccCHHHHHHHHHHHhcCC
Q psy13098 23 IDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGL 61 (81)
Q Consensus 23 gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRKGL 61 (81)
|.++....++++++..|+ ..|.++|..+|+++||
T Consensus 150 G~~~~~~i~~~e~~~~Gk-----~~A~~il~~lR~~~~l 183 (344)
T 2qx2_A 150 GPTFSKKLDDSEVKKQGK-----QMASEILSRLRENDDL 183 (344)
T ss_dssp SCCEEEECCHHHHHHHHH-----HHHHHHHHHHHTSGGG
T ss_pred CcceeecCCHHHHHHHHH-----HHHHHHHHHHHhhccc
Confidence 677777788999999874 5899999999999988
No 18
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=47.74 E-value=11 Score=22.85 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=27.9
Q ss_pred CCCCCCCcchHHHhhcCCCCCccCHHHHHHHHHHHhcCCCc
Q psy13098 23 IDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPV 63 (81)
Q Consensus 23 gDP~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRKGL~~ 63 (81)
+||- .|.|++.|-+.+.. .+-++||..|.+-|..-|++.
T Consensus 32 Ed~~-kPlSD~~I~~~L~~-~Gi~IaRRTVaKYRe~l~Ip~ 70 (76)
T 2ahq_A 32 EDKR-KPYSDQEIANILKE-KGFKVARRTVAKYREMLGIPS 70 (76)
T ss_dssp CCSS-SCCCHHHHHHHHTT-TSSCCCHHHHHHHHHHTC---
T ss_pred cCCC-CCCCHHHHHHHHHH-cCCCccHHHHHHHHHHcCCCc
Confidence 3443 56788998886654 366799999999999988864
No 19
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=30.09 E-value=6 Score=24.70 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=33.9
Q ss_pred CCCCcchHHHhhcCCCCCccCHHHHHHHHHHHhc-CCCcccccCcchhhHHhh
Q psy13098 26 YWEPRTEEEYLHFGDKADTENRARKYMDSVRKRK-GLPVQDKLVAHAEKQRTV 77 (81)
Q Consensus 26 ~~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRK-GL~~~ekiv~~aekqr~L 77 (81)
.+.+.|||++-.++.-.|. ...++|.+.+.|+ ||..++-+-..|+=.++|
T Consensus 15 ~~~~iTEe~VRryL~rkPm--TT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki 65 (82)
T 1nha_A 15 GDVQVTEDAVRRYLTRKPM--TTKDLLKKFQTKKTGLSSEQTVNVLAQILKRL 65 (82)
T ss_dssp -CCCCCHHHHHHHHHHSCB--CHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCc--cHHHHHHHHHHhcccCCCHHHHHHHHHHHHHc
Confidence 4557899998886554333 4899999999986 777666655555544444
No 20
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=29.67 E-value=26 Score=19.40 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCCCcc
Q psy13098 47 RARKYMDSVRKRKGLPVQ 64 (81)
Q Consensus 47 ~Ar~~v~~iRkRKGL~~~ 64 (81)
.-.+++...|+++||.-.
T Consensus 12 ~l~~~l~~~r~~~gltq~ 29 (80)
T 3kz3_A 12 RLKAIWEKKKNELGLSYE 29 (80)
T ss_dssp HHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 346788899999998643
No 21
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=27.61 E-value=49 Score=20.60 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=16.3
Q ss_pred HHHHHhcCCCcccccCcchhhHH
Q psy13098 53 DSVRKRKGLPVQDKLVAHAEKQR 75 (81)
Q Consensus 53 ~~iRkRKGL~~~ekiv~~aekqr 75 (81)
+.=|+|+|+ .+-+|..+|...
T Consensus 55 ~~eRRr~Gi--~P~~P~~~eR~~ 75 (85)
T 2lqt_A 55 VMQRRKNGV--KPFMPTAAERDE 75 (85)
T ss_dssp HHHHHTTCC--SCSSCCHHHHHH
T ss_pred HHHHHHCCC--CCCCcCHHHHHH
Confidence 345888998 788888888755
No 22
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.34 E-value=31 Score=20.28 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=20.9
Q ss_pred cchHHHhhcCCCCCccCHHHHHHHHHHHhcC
Q psy13098 30 RTEEEYLHFGDKADTENRARKYMDSVRKRKG 60 (81)
Q Consensus 30 ~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRKG 60 (81)
.|+++++...........|+.+++.+. +||
T Consensus 37 lt~~~~e~I~~~~t~~~kar~Lld~l~-~kG 66 (94)
T 2p1h_A 37 LTISEEEKVRNEPTQQQRAAMLIKMIL-KKD 66 (94)
T ss_dssp SCHHHHHHHHTSSSHHHHHHHHHHHHT-TSC
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHH-HcC
Confidence 366777665444466678999999885 566
No 23
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=26.04 E-value=35 Score=25.92 Aligned_cols=17 Identities=47% Similarity=0.728 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCCc
Q psy13098 47 RARKYMDSVRKRKGLPV 63 (81)
Q Consensus 47 ~Ar~~v~~iRkRKGL~~ 63 (81)
.|.++|+.||+|-||+.
T Consensus 410 ~a~~~iN~VR~RAgl~~ 426 (517)
T 3qnk_A 410 GARKAVNMIRQRVGLPD 426 (517)
T ss_dssp HHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 46689999999999964
No 24
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=25.54 E-value=68 Score=24.18 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHhcCCCc
Q psy13098 46 NRARKYMDSVRKRKGLPV 63 (81)
Q Consensus 46 n~Ar~~v~~iRkRKGL~~ 63 (81)
..|.++|+.||+|-||+.
T Consensus 378 ~~A~~~lN~VR~RAgl~~ 395 (481)
T 3jq1_A 378 DTSIGYINQIRRRANLND 395 (481)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 468899999999999864
No 25
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=24.88 E-value=40 Score=25.39 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHhcCCCc
Q psy13098 46 NRARKYMDSVRKRKGLPV 63 (81)
Q Consensus 46 n~Ar~~v~~iRkRKGL~~ 63 (81)
..|.++|+.||+|-||+.
T Consensus 380 ~~A~~~lN~vR~Rag~~~ 397 (482)
T 3otn_A 380 QQSIDIVNQIRGRAGLAP 397 (482)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhccCCCC
Confidence 468999999999999853
No 26
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.11 E-value=45 Score=25.08 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCCc
Q psy13098 47 RARKYMDSVRKRKGLPV 63 (81)
Q Consensus 47 ~Ar~~v~~iRkRKGL~~ 63 (81)
.|..+|+.||+|-||+.
T Consensus 387 ~A~~~lN~VR~Rag~~~ 403 (481)
T 3iv0_A 387 KACELLNRVRNRAHASE 403 (481)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 68999999999999853
No 27
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=21.74 E-value=9.5 Score=23.29 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=33.5
Q ss_pred CCCcchHHHhhcCCCCCccCHHHHHHHHHHHhc-CCCcccccCcchhhHHhh
Q psy13098 27 WEPRTEEEYLHFGDKADTENRARKYMDSVRKRK-GLPVQDKLVAHAEKQRTV 77 (81)
Q Consensus 27 ~~~~t~ee~e~~g~~~~~~n~Ar~~v~~iRkRK-GL~~~ekiv~~aekqr~L 77 (81)
..+.|||++-.+....|. ...++|.+.+.|+ ||..++-+-..|+=.++|
T Consensus 7 ~~~iTEe~VrryL~rkPm--Tt~dLl~KFK~r~~~~~~~e~v~~~a~ILkki 56 (73)
T 1i27_A 7 DVQVTEDAVRRYLTRKPM--TTKDLLKKFQTKKTGLSSEQTVNVLAQILKRL 56 (73)
T ss_dssp CSSCCHHHHHHHHHHSCB--CHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHcCCc--cHHHHHHHHHHhcccCCCHHHHHHHHHHHHHc
Confidence 346899998886554343 4889999998885 887776655555544444
No 28
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=21.30 E-value=1.3e+02 Score=17.19 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=20.8
Q ss_pred cchHHHhh--cCCCCC-ccCHHHHHHHHHHHhcC
Q psy13098 30 RTEEEYLH--FGDKAD-TENRARKYMDSVRKRKG 60 (81)
Q Consensus 30 ~t~ee~e~--~g~~~~-~~n~Ar~~v~~iRkRKG 60 (81)
+|.++|.+ ||...+ ..+....+|..+|+.-+
T Consensus 42 vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~ 75 (96)
T 3rjp_A 42 MTREELLSNVWKYDEAVETNVVDVYIRYLRGKID 75 (96)
T ss_dssp BCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHC
T ss_pred EcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhc
Confidence 46777666 665433 34556888999998754
Done!