RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13098
(81 letters)
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 117
Score = 35.0 bits (80), Expect = 2e-04
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 38 FGDKADTENRARKYMDSVRKRKGLPVQ--------DKL 67
D D ++A + + + RKR G+ + DKL
Sbjct: 80 GSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 117
>d2pzza1 d.77.1.2 (A:2-134) Hypotheical protein MJ1564
{Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 133
Score = 25.9 bits (57), Expect = 0.39
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 22 NIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRKGLPV-QDKLVAHAEKQRTV 77
NI P + E+ FG+ K + +R + L + L + T
Sbjct: 24 NIFPKAKLTFIEKDNEFGEWEGKTKSVEKLKELLRSQSILDAARMVLEKGMTENATK 80
>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 115
Score = 24.0 bits (51), Expect = 2.2
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 3 LCCRGSVDGLRYFFWFQVINIDPYWEPRTEEEYLHFGDKADTENRARKYMDSVRKRK 59
L C S Y FW+ P + +Y N + +K +
Sbjct: 20 LRCNYSSSVPPYLFWYV---QYPNQGLQLLLKYTSAATLVKGING---FEAEFKKSE 70
>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 112
Score = 23.9 bits (51), Expect = 2.3
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 3 LCCRGSVDGLRYFFWFQ 19
L C + W+Q
Sbjct: 21 LRCILKNSQYPWMSWYQ 37
>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda
variable domain, VL-lambda {Human (Homo sapiens),
cluster 5 [TaxId: 9606]}
Length = 103
Score = 23.9 bits (51), Expect = 2.3
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 3 LCCRGSVDGLRYFFWFQ 19
+ C + +Y +W+Q
Sbjct: 18 ITCSANALPNQYAYWYQ 34
>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 115
Score = 23.6 bits (50), Expect = 2.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 3 LCCRGSVDGLRYFFWFQ 19
L C+ S Y FW+
Sbjct: 20 LRCKYSYSATPYLFWYV 36
>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 106
Score = 23.5 bits (50), Expect = 3.4
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 3 LCCRGSVDGLRYFFWFQVINIDPYWEPRTEEEYLHFGD 40
+ C+ S D +Y W+Q +P + L
Sbjct: 20 ITCKASQDIKKYIGWYQ-------HKPGKQPRLLIHYT 50
>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 23.1 bits (49), Expect = 4.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 3 LCCRGSVDGLRYFFWFQ 19
+ CR S D + W+Q
Sbjct: 21 ISCRASQDINNFLNWYQ 37
>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 22.7 bits (48), Expect = 5.4
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 3 LCCRGSVDGLRYFFWFQVINIDPYW 27
L C+ S + Y W+Q
Sbjct: 21 LNCKASENVGTYVSWYQQKPGQSPV 45
>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Engineered (including hybrid
species)}
Length = 106
Score = 22.7 bits (48), Expect = 6.0
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 3 LCCRGSVDGLRYFFWFQ 19
+ CR S + W+Q
Sbjct: 20 ITCRASQSIETWLAWYQ 36
>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 22.7 bits (48), Expect = 6.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 3 LCCRGSVDGLRYFFWFQ 19
+ C+ S D Y WFQ
Sbjct: 21 ITCKASQDINSYLSWFQ 37
>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda
variable domain, VL-lambda {Hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 108
Score = 22.4 bits (47), Expect = 6.7
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 3 LCCRGSVDGLRYFFWFQVINIDPYW 27
+ C G + +WFQ +
Sbjct: 19 ITCSGDQLPKNFAYWFQQKSDKNIL 43
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 22.1 bits (47), Expect = 7.6
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 4 CCRGSVDGLRYF 15
G G + F
Sbjct: 59 FTDGVYQGKQLF 70
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 22.0 bits (47), Expect = 9.9
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 4 CCRGSVDGLRYF 15
GS+ G +YF
Sbjct: 58 KNDGSIGGKQYF 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.439
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 315,210
Number of extensions: 12224
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 19
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)