Query psy13101
Match_columns 420
No_of_seqs 264 out of 1620
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:33:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471|consensus 100.0 1.7E-40 3.6E-45 327.4 22.7 274 49-392 8-287 (317)
2 KOG1470|consensus 100.0 4.5E-39 9.9E-44 307.4 18.6 233 65-383 27-261 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 5.1E-31 1.1E-35 233.3 11.1 153 201-364 7-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 4.1E-28 9E-33 214.4 14.4 155 196-366 4-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 9.1E-25 2E-29 191.2 13.5 144 206-364 14-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 3.1E-13 6.8E-18 118.5 4.0 139 206-368 7-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.8 7.5E-09 1.6E-13 75.0 5.7 46 64-109 1-55 (55)
8 KOG4406|consensus 97.8 0.00015 3.2E-09 71.9 9.9 123 208-353 89-211 (467)
9 PF14555 UBA_4: UBA-like domai 78.6 7.3 0.00016 26.2 5.2 36 65-107 2-37 (43)
10 PF02845 CUE: CUE domain; Int 76.9 8.6 0.00019 25.7 5.2 38 65-108 3-40 (42)
11 smart00546 CUE Domain that may 71.6 11 0.00023 25.3 4.6 38 65-108 4-41 (43)
12 PF06972 DUF1296: Protein of u 63.5 28 0.0006 25.4 5.4 42 61-108 3-44 (60)
13 PF00627 UBA: UBA/TS-N domain; 49.7 66 0.0014 20.6 5.2 34 65-106 4-37 (37)
14 smart00165 UBA Ubiquitin assoc 42.5 78 0.0017 20.0 4.7 23 84-106 14-36 (37)
15 smart00804 TAP_C C-terminal do 40.8 1.5E+02 0.0031 21.9 6.4 45 58-109 7-51 (63)
16 smart00516 SEC14 Domain in hom 37.3 2.5E+02 0.0054 23.6 13.2 29 131-160 5-33 (158)
17 PF08938 HBS1_N: HBS1 N-termin 33.9 18 0.00038 27.9 0.6 48 58-109 19-70 (79)
18 KOG1838|consensus 30.0 4E+02 0.0086 27.4 9.6 89 209-321 121-215 (409)
19 KOG1471|consensus 29.0 48 0.001 32.3 2.9 41 135-175 95-135 (317)
20 PF11964 SpoIIAA-like: SpoIIAA 28.9 2.9E+02 0.0062 21.7 7.6 56 264-325 31-87 (109)
21 PF03474 DMA: DMRTA motif; In 28.6 90 0.0019 20.8 3.2 22 85-106 17-38 (39)
22 cd00194 UBA Ubiquitin Associat 25.7 1.1E+02 0.0023 19.5 3.2 23 84-106 14-36 (38)
23 PRK14136 recX recombination re 23.3 96 0.0021 30.5 3.7 59 48-109 241-302 (309)
24 PF04378 RsmJ: Ribosomal RNA s 22.7 58 0.0013 31.0 2.1 30 303-332 205-234 (245)
25 COG2961 ComJ Protein involved 22.6 63 0.0014 30.9 2.2 28 304-331 237-264 (279)
26 PF04838 Baculo_LEF5: Baculovi 21.9 79 0.0017 27.5 2.5 68 288-356 17-98 (159)
27 PF14213 DUF4325: Domain of un 20.7 3.1E+02 0.0067 20.5 5.4 48 267-319 19-68 (74)
No 1
>KOG1471|consensus
Probab=100.00 E-value=1.7e-40 Score=327.43 Aligned_cols=274 Identities=31% Similarity=0.541 Sum_probs=225.0
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhhhhhCCC--CCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcChhhhhhhcC
Q psy13101 49 DDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGK--LPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYE 126 (420)
Q Consensus 49 ~~~~~~~l~~l~~~~~~~l~~lr~~l~~~~~~~--~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~d~i~~~~~ 126 (420)
.+.+..+++++++.+++.++++| |+...+++. ..||.+|+||||||+||+++|+++|.+++.||+++.+|+++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~ 86 (317)
T KOG1471|consen 8 AKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFE 86 (317)
T ss_pred ccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccc
Confidence 34667788999999999999999 777766654 468899999999999999999999999999999999998876532
Q ss_pred CchhhhhhccCcccccCCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchhhccccccc
Q psy13101 127 APPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWH 206 (420)
Q Consensus 127 ~~~~~~~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~~~~p~~~~ 206 (420)
.... ...+.|++++
T Consensus 87 ~~~~------------------------------------------------------------------~~~~~~~~~~ 100 (317)
T KOG1471|consen 87 EDDE------------------------------------------------------------------LLKYYPQGLH 100 (317)
T ss_pred cchh------------------------------------------------------------------hhhhcccccc
Confidence 2111 1124455678
Q ss_pred ccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHh-hHHHHhhcCCCcccEEEEEECCCCCcCCccchhH
Q psy13101 207 HCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLAL-TEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGV 285 (420)
Q Consensus 207 g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~ 285 (420)
|.|+.|+|+++.+.|..|.+.++..+...+..++.+..+|..... ++......+.++.|++.|+|++|++++|++++.+
T Consensus 101 ~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~ 180 (317)
T KOG1471|consen 101 GVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAP 180 (317)
T ss_pred ccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHH
Confidence 999999999999999999999999999999999999999988754 3434444457899999999999999999998889
Q ss_pred HHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCCC
Q psy13101 286 KALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPC 365 (420)
Q Consensus 286 ~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~~ 365 (420)
+.+++++.++|++||++++++||||+|++|+++|+++||||+++|++||+++++++ .++|.++|++++||++|||++
T Consensus 181 ~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~---~~~L~k~i~~~~LP~~yGG~~ 257 (317)
T KOG1471|consen 181 TLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKD---KESLLKYIPPEVLPEEYGGTC 257 (317)
T ss_pred HHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCc---hhhhhhhCCHhhCccccCCCc
Confidence 99999999999999999999999999999999999999999999999999655443 348999999999999999999
Q ss_pred CcCCC-CC--CcCCCCCccchhhHHHHHhh
Q psy13101 366 ETKLP-EG--GLLPFLLPFCRRKLSKILSR 392 (420)
Q Consensus 366 ~~~~~-~~--~~~p~~~~~~~~~~~~~~~~ 392 (420)
.+... .+ ..+.......+.........
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (317)
T KOG1471|consen 258 GDLDDPNGGGCDLSDEGPWKEPEIKKGKQE 287 (317)
T ss_pred cccccccCCcCccccccccccccccccccc
Confidence 98521 12 24444444444444443333
No 2
>KOG1470|consensus
Probab=100.00 E-value=4.5e-39 Score=307.40 Aligned_cols=233 Identities=25% Similarity=0.485 Sum_probs=190.7
Q ss_pred HHHHHHHHHhhhhhC--CCCCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcChhhhhhhcCCchhhhhhccCccccc
Q psy13101 65 SKLIQFKKQFGYLQK--GKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHC 142 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~--~~~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~d~i~~~~~~~~~~~~~~~~g~~~~ 142 (420)
+.+.+++..+..... ....+|.+++||||||+||+++|.+||.+++.||+.+++...+..
T Consensus 27 ~k~~~~~~~~~pl~~~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~------------------ 88 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTEKESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEA------------------ 88 (324)
T ss_pred HHHHHHHHhhcchhhhhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCH------------------
Confidence 345555555532221 134689999999999999999999999999999999986541110
Q ss_pred CCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchhhcccccccccCCCCCcEEEEecCC
Q psy13101 143 DREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGV 222 (420)
Q Consensus 143 d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~~~~p~~~~g~D~~GrpV~i~r~g~ 222 (420)
+.|..++ +++++|+ .|.|++||||+|+|+..
T Consensus 89 ------------------------------------------~Ev~~e~---~tGK~yi----~G~D~~gRPVl~~~~~~ 119 (324)
T KOG1470|consen 89 ------------------------------------------DEVAAEL---ETGKAYI----LGHDKDGRPVLYLRPRP 119 (324)
T ss_pred ------------------------------------------HHHHHHh---hcCcEEE----ecccCCCCeEEEEecCC
Confidence 1112222 2477775 68999999999997765
Q ss_pred CChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccchhHHHHHHHHHHHHhhcccc
Q psy13101 223 MDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPET 302 (420)
Q Consensus 223 ~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~~~~k~~~~~lq~~YPer 302 (420)
..++ ..+.+++.|+++|+||.++..|+ .+++++++++|+.|+|++++ +++..+.+++++|+|||||
T Consensus 120 ~~qn----~~t~~~~~r~~Vy~mE~Ai~~lp-------~~qe~~~~L~D~~~fs~sN~---d~~~~k~~~~~lq~hYPEr 185 (324)
T KOG1470|consen 120 HRQN----TKTQKELERLLVYTLENAILFLP-------PGQEQFVWLFDLTGFSMSNP---DIKFLKELLHILQDHYPER 185 (324)
T ss_pred CCCC----CCCHHHHHHHHHHHHHHHHHhCC-------CCcceEEEEEecccCcccCC---CcHHHHHHHHHHHHhChHH
Confidence 5444 46889999999999999987664 46788999999999999965 6889999999999999999
Q ss_pred cceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCCCCcCCCCCCcCCCCCccc
Q psy13101 303 LGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLPFLLPFC 382 (420)
Q Consensus 303 l~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~~~~~~~~p~~~~~~ 382 (420)
|+..+|+|+||+|..+|+++||||+|+|++||.|..+. +.|.++||+++||..|||+..+.+.+..+|+.+...+
T Consensus 186 Lg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~-----~~l~~~~d~~~l~s~~GG~~~~~y~~e~~~~~~~~~~ 260 (324)
T KOG1470|consen 186 LGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK-----DDLSEYFDESQLPSLFGGKLLFEYTHEEYWPQMKEDD 260 (324)
T ss_pred hhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh-----hHHHhhCCccccchhhCCCcccccCCcchhhhhhhhH
Confidence 99999999999999999999999999999999997532 2699999999999999999998888888888887654
Q ss_pred h
Q psy13101 383 R 383 (420)
Q Consensus 383 ~ 383 (420)
.
T Consensus 261 ~ 261 (324)
T KOG1470|consen 261 S 261 (324)
T ss_pred H
Confidence 4
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=5.1e-31 Score=233.30 Aligned_cols=153 Identities=28% Similarity=0.536 Sum_probs=125.5
Q ss_pred ccccccccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCc
Q psy13101 201 FTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHL 280 (420)
Q Consensus 201 ~p~~~~g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~ 280 (420)
.+++++|+|++||||++++++++|++ ..+.+++.+++++.+|.+++.+++ +.+++++++|+|++|++++++
T Consensus 7 ~~~~~~g~D~~gr~v~~~~~~~~~~~----~~~~~~~~~~~~~~~E~~~~~~~~-----~~~~~~~~~iiD~~g~~~~~~ 77 (159)
T PF00650_consen 7 GPFYLHGRDKDGRPVIYIRLGRFDPK----KFSPEDVIRFFVYLLERMLKRMPE-----GGQVEGIVVIIDLSGFSLSNF 77 (159)
T ss_dssp SCEEEEEE-TTS-EEEEEEGTT--HH----TS-HHHHHHHHHHHHHHHHHTHHH-----TSHHH-EEEEEE-TT--HHHH
T ss_pred eeEEECCCCCCcCEEEEEEcccCCCC----cCCHHHHHHHHHHHHHHHHhhhcc-----cccceeEEEEEeCCCceEecc
Confidence 34557899999999999999999987 467899999999999999876553 345789999999999999988
Q ss_pred cchhHHHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCcc
Q psy13101 281 WRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDF 360 (420)
Q Consensus 281 ~~~~~~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~ 360 (420)
....++.++.+++++|++||+|++++||+|+|++|+++|++++|||+++|++||++++++++++ .|.++||+++||++
T Consensus 78 ~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~--~l~~~i~~~~lP~~ 155 (159)
T PF00650_consen 78 DWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKA--KLKEYIDPEQLPVE 155 (159)
T ss_dssp HCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCH--HHCCCSTGGGSBGG
T ss_pred ccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHH--HHHhhCCHhHCchh
Confidence 5444888999999999999999999999999999999999999999999999999986666544 89999999999999
Q ss_pred CCCC
Q psy13101 361 LGGP 364 (420)
Q Consensus 361 yGG~ 364 (420)
|||+
T Consensus 156 ~GG~ 159 (159)
T PF00650_consen 156 YGGT 159 (159)
T ss_dssp GTSS
T ss_pred cCCC
Confidence 9996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=4.1e-28 Score=214.40 Aligned_cols=155 Identities=34% Similarity=0.660 Sum_probs=137.3
Q ss_pred chhhcccccccccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCC
Q psy13101 196 VVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGL 275 (420)
Q Consensus 196 ~~~~~~p~~~~g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~ 275 (420)
.++.++|+++ |+|++||||+++++++++++ ..+.+++++++++.+|.++... ....++.++++|+|++|+
T Consensus 4 ~~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~----~~~~~~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 4 LGKAYIPGGR-GYDKDGRPVLIFRAGRFDLK----SVTLEELLRYLVYVLEKILQRE-----KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred hHHHhcCCCC-CCCCCcCEEEEEeccccccC----cCCHHHHHHHHHHHHHHHHHHH-----hcCCCeeeEEEEEECCCC
Confidence 3677888887 99999999999999998865 4789999999999999987531 124568999999999999
Q ss_pred CcCCccchhHHHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccC
Q psy13101 276 NMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQ 355 (420)
Q Consensus 276 sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~ 355 (420)
+++++ +++.++.++++++++||++++++||+|+|++++++|+++++|+++++++||+++++ +. .+.|.++||++
T Consensus 74 ~~~~~---~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~-~~--~~~L~~~i~~~ 147 (158)
T smart00516 74 SMSNP---DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGN-DS--KEELLEYIDPE 147 (158)
T ss_pred Ccccc---cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCC-CC--HHHHHhhCCHh
Confidence 99984 57889999999999999999999999999999999999999999999999999854 32 24899999999
Q ss_pred CCCccCCCCCC
Q psy13101 356 YIPDFLGGPCE 366 (420)
Q Consensus 356 ~LP~~yGG~~~ 366 (420)
+||++|||++.
T Consensus 148 ~lP~~~GG~~~ 158 (158)
T smart00516 148 QLPEELGGTLD 158 (158)
T ss_pred hCcHhhCCCCC
Confidence 99999999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.92 E-value=9.1e-25 Score=191.23 Aligned_cols=144 Identities=33% Similarity=0.639 Sum_probs=125.4
Q ss_pred cccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccchhH
Q psy13101 206 HHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGV 285 (420)
Q Consensus 206 ~g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~ 285 (420)
.++|++||||++++++..++.. ..+.++++++.++.+|.++..... ...++++|+|++|++++++. .++
T Consensus 14 ~~~D~~gr~V~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~~~~~~~~-------~~~~~~~i~D~~~~~~~~~~-~~~ 82 (157)
T cd00170 14 GGRDKEGRPVLIIRAGNKDLSK---SLDSEELLRYLVYTLEKLLQEDDE-------QVEGFVVIIDLKGLSLSHLL-PDP 82 (157)
T ss_pred CCCCCCcCEEEEEecCCcchhh---cCCHHHHHHHHHHHHHHHHhhhhh-------cccceEEEEECCCCChhccc-hhH
Confidence 4579999999999999766553 234589999999999998765331 22689999999999999986 577
Q ss_pred HHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCC
Q psy13101 286 KALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGP 364 (420)
Q Consensus 286 ~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~ 364 (420)
+.+++++++++++||++++++||+|+|++++++|+++++|+++++++||+++++ + .+.|.++||+++||++|||+
T Consensus 83 ~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~-~---~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 83 SLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGS-D---KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecC-C---HHHHHhhCChhhCcHhhCCC
Confidence 889999999999999999999999999999999999999999999999999753 2 24899999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.37 E-value=3.1e-13 Score=118.52 Aligned_cols=139 Identities=20% Similarity=0.305 Sum_probs=90.1
Q ss_pred cccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccchhH
Q psy13101 206 HHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGV 285 (420)
Q Consensus 206 ~g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~ 285 (420)
.|+|++||||+++..... ++ .+++-+.+.|++...... ..-.++++|+|+.+.+..+- ++.
T Consensus 7 gG~d~~g~pV~~~~~~~~-~~-------~~~~~~ll~yl~~~l~~~---------~~~~~f~vVid~~~~~~~~~--~~~ 67 (149)
T PF13716_consen 7 GGRDREGRPVVVFIASRL-PS-------SDDLERLLLYLLSTLSEE---------VVDKPFSVVIDHTGFSRSSE--PSL 67 (149)
T ss_dssp EEEBTTS-EEEEEEGGG--C--------TTHHHHHHHHHHHHH-TT---------TTTS-EEEEEE-TT--GGG-----H
T ss_pred cccCCCcCEEEEEECCcC-cc-------hhhHHHHHHHHHHhhhHH---------hcCCCEEEEEEcCCCccccC--Cch
Confidence 489999999999997766 32 124444444554443211 11245899999999988543 567
Q ss_pred HHHHHHHHHHHhhcccccceEEEEcCCCcHHHHH-HHhhhccChhc-cceEEEecCCCcCchhHHHhccccCCCCccCCC
Q psy13101 286 KALLRIIEIVETNYPETLGRVLIIRAPRVFPILW-TLVSTFIDETT-RSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGG 363 (420)
Q Consensus 286 ~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~-~lvkpfL~~~t-~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG 363 (420)
..++++.+.+...|+..++++||+|++++++.++ .+.+++.+.+. ..||.++. + .++|.++||+++||+++||
T Consensus 68 ~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~-s----l~~L~~~i~~~qL~~~lp~ 142 (149)
T PF13716_consen 68 SWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVS-S----LSELSKHIDPSQLPESLPG 142 (149)
T ss_dssp HHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEES-S----TCGGGGTSGGGG------H
T ss_pred HHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEEC-C----HHHHHhhCCHHHhcccCCC
Confidence 8899999999999999999999999999999999 56667788888 89988874 2 3489999999999999998
Q ss_pred CCCcC
Q psy13101 364 PCETK 368 (420)
Q Consensus 364 ~~~~~ 368 (420)
..+++
T Consensus 143 ~~~~d 147 (149)
T PF13716_consen 143 VLQYD 147 (149)
T ss_dssp HH---
T ss_pred EEecC
Confidence 87754
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.82 E-value=7.5e-09 Score=75.00 Aligned_cols=46 Identities=30% Similarity=0.530 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhh-------C--CCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQ-------K--GKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~-------~--~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
++++++|++.|.+.. . ....+|.+|+||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 468999999999741 1 234689999999999999999999999876
No 8
>KOG4406|consensus
Probab=97.77 E-value=0.00015 Score=71.92 Aligned_cols=123 Identities=12% Similarity=0.267 Sum_probs=92.4
Q ss_pred cCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccchhHHH
Q psy13101 208 CDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKA 287 (420)
Q Consensus 208 ~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~~~ 287 (420)
.|++||+|+++-..++-+.. ...-..++++.++.++..++. -.+.+.=-.|+...+. +.++.
T Consensus 89 ~D~~gr~iivv~a~rlp~~~---eld~~~li~~~v~~id~~Ve~-------------DYt~vYfh~gl~s~nk--p~l~~ 150 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSS---ELDDIRLISYLVYTIDKYVEN-------------DYTLVYFHHGLPSDNK--PYLQL 150 (467)
T ss_pred ccccCCeeEEEEEecCCchh---hhhhHHHHHHHHHHHHHHHhc-------------cceeeehhcCCccccc--chHHH
Confidence 69999999999887765442 223334888888888887642 1345554455555543 55677
Q ss_pred HHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccc
Q psy13101 288 LLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIE 353 (420)
Q Consensus 288 ~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~ 353 (420)
+.....-+-.+|--.++.+|+|+.-|+..++|+++|||++.|..+||+.+. . ..+|.++|.
T Consensus 151 l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n-~----lseL~~~l~ 211 (467)
T KOG4406|consen 151 LFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN-S----LSELFEALK 211 (467)
T ss_pred HHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee-h----HHHHHHhhh
Confidence 777777777779999999999999999999999999999999999998873 2 347877764
No 9
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=78.58 E-value=7.3 Score=26.23 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHH
Q psy13101 65 SKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLS 107 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~ 107 (420)
+.|.+|.+... .++..-..||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg-------~~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG-------ADEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH--------SSHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC-------cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45666665543 2578889999999999999997653
No 10
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=76.88 E-value=8.6 Score=25.68 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 65 SKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
+.+++|++.+-. .+...+..-|+++++|++.|...|.+
T Consensus 3 ~~v~~L~~mFP~------~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMFPD------LDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHSSS------S-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCC------CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 466777776543 35889999999999999999998764
No 11
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=71.64 E-value=11 Score=25.31 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 65 SKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
+.++.|++.+-. .++..+.+-|++++.|++.|...|.+
T Consensus 4 ~~v~~L~~mFP~------l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPN------LDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCC------CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456667766442 35888999999999999999988753
No 12
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=63.51 E-value=28 Score=25.35 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 61 PMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 61 ~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
..-+..++.+|+.... .+|.-+..-|+-|++|++.|.++|..
T Consensus 3 ~~~rk~VQ~iKEiv~~------hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 3 AASRKTVQSIKEIVGC------HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred hHHHHHHHHHHHHhcC------CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3445556666655543 36888899999999999999998875
No 13
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=49.73 E-value=66 Score=20.60 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 65 SKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l 106 (420)
+.|++|++. + .+.....+=|+.+++|+++|...|
T Consensus 4 ~~v~~L~~m----G----f~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEM----G----FSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHH----T----S-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHc----C----CCHHHHHHHHHHcCCCHHHHHHhC
Confidence 455666655 1 235577888999999999998754
No 14
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=42.54 E-value=78 Score=20.01 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=18.9
Q ss_pred ChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 84 SDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 84 dd~~LlRFLra~k~dve~A~~~l 106 (420)
+.....+-|+.+++|+++|..-|
T Consensus 14 ~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 14 SREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Confidence 46678889999999999997654
No 15
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=40.80 E-value=1.5e+02 Score=21.93 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 58 DLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 58 ~l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
.+++.+++.+.+|-+.-. .+..+-.++|...+||.++|.+.+.+-
T Consensus 7 ~~~~~q~~~v~~~~~~Tg-------mn~~~s~~cLe~~~Wd~~~Al~~F~~l 51 (63)
T smart00804 7 TLSPEQQEMVQAFSAQTG-------MNAEYSQMCLEDNNWDYERALKNFTEL 51 (63)
T ss_pred CCCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456667666666554322 357888999999999999999988764
No 16
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=37.33 E-value=2.5e+02 Score=23.58 Aligned_cols=29 Identities=34% Similarity=0.697 Sum_probs=24.3
Q ss_pred hhhhccCcccccCCCCCcceeeeccccccc
Q psy13101 131 VRAYFTGTWHHCDREMRPLYLFKLGVMDVK 160 (420)
Q Consensus 131 ~~~~~~~g~~~~d~~~~P~~~~~~g~~d~~ 160 (420)
.+.++++|+ +.|+.|+|+++..++.++.+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~ 33 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLK 33 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccC
Confidence 456788887 89999999999999987743
No 17
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=33.87 E-value=18 Score=27.93 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=29.1
Q ss_pred CCCHHHHHHH----HHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 58 DLTPMQESKL----IQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 58 ~l~~~~~~~l----~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
.|++++++.+ .++|+.|... .+++..|..=|..+.|||++|+..|.+.
T Consensus 19 ~Ls~ed~~~L~~~l~~vr~~Lg~~----~~~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 19 ELSPEDQAQLYSCLPQVREVLGDY----VPPEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp H-TCHHHHHHCHHCCCHHHHCCCC----C--CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHHccc----CCCHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3455554444 4445444432 2157777888999999999999888754
No 18
>KOG1838|consensus
Probab=30.03 E-value=4e+02 Score=27.40 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=61.0
Q ss_pred CCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccch-----
Q psy13101 209 DREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRP----- 283 (420)
Q Consensus 209 D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~----- 283 (420)
|....|++++-+|-.. .+.+.++|.++. .+. ..|- -++|++-.|.+-..+..+
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~---~a~--------~~G~----r~VVfN~RG~~g~~LtTpr~f~a 178 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVH---EAQ--------RKGY----RVVVFNHRGLGGSKLTTPRLFTA 178 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHH---HHH--------hCCc----EEEEECCCCCCCCccCCCceeec
Confidence 3456699999988653 245666665442 222 2232 388999999766665432
Q ss_pred -hHHHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHH
Q psy13101 284 -GVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTL 321 (420)
Q Consensus 284 -~~~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~l 321 (420)
....++.+++.+...||.+ +++.+-.+.--++++|-
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nY 215 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNY 215 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHH
Confidence 3466889999999999999 77777777777777764
No 19
>KOG1471|consensus
Probab=29.01 E-value=48 Score=32.35 Aligned_cols=41 Identities=39% Similarity=0.659 Sum_probs=35.7
Q ss_pred ccCcccccCCCCCcceeeeccccccccccccccchhhhhhh
Q psy13101 135 FTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLS 175 (420)
Q Consensus 135 ~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~ 175 (420)
+|.+.++.|+.|+|+++...|..|.+.+++.++....++.+
T Consensus 95 ~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~ 135 (317)
T KOG1471|consen 95 YPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYH 135 (317)
T ss_pred ccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHH
Confidence 45667889999999999999999999999998888877765
No 20
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=28.90 E-value=2.9e+02 Score=21.73 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=40.3
Q ss_pred ccEEEEEECC-CCCcCCccchhHHHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhc
Q psy13101 264 TTWSLLIDLE-GLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTF 325 (420)
Q Consensus 264 ~~~v~IiDl~-g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpf 325 (420)
..+.+++|+. ++.- .++.......++... +...++++-||-.+.+...+.+++.+|
T Consensus 31 ~~~~ll~d~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~~~~~~~ 87 (109)
T PF11964_consen 31 GKIRLLVDLRRDFEG-----WSPEARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIANFFAAF 87 (109)
T ss_dssp SSEEEEEEEC-CEEE-----EHHHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHHHHHHHH
T ss_pred CceEEEEEecCccCC-----CCHHHHHHHHHhchh-hhcccCEEEEEECcHHHHHHHHHHHhc
Confidence 3478899988 6521 234444444555545 888899999999999999999999986
No 21
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=28.56 E-value=90 Score=20.78 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=18.6
Q ss_pred hHHHHHHHhhCCCCHHHHHHHH
Q psy13101 85 DSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 85 d~~LlRFLra~k~dve~A~~~l 106 (420)
...|-.-|++|+.|+-+|.+.+
T Consensus 17 r~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 17 RSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred hHHHHHHHHHcCCcHHHHHHHh
Confidence 5677778999999999998865
No 22
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=25.66 E-value=1.1e+02 Score=19.49 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.5
Q ss_pred ChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 84 SDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 84 dd~~LlRFLra~k~dve~A~~~l 106 (420)
+.....+=|+.+++|+++|...|
T Consensus 14 ~~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 14 SREEARKALRATNNNVERAVEWL 36 (38)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Confidence 47778888999999999998765
No 23
>PRK14136 recX recombination regulator RecX; Provisional
Probab=23.28 E-value=96 Score=30.46 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=33.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhhhhCCCCC---ChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 48 EDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLP---SDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 48 ~~~~~~~~l~~l~~~~~~~l~~lr~~l~~~~~~~~~---dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
+.+.+...|.++.+.+ ++.+++++.+....... ...-+.|||..++|+.+...+.|+.+
T Consensus 241 d~eLIEqALeeieEDE---~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGFS~D~I~~vLk~~ 302 (309)
T PRK14136 241 GDALVESVGAQLRETE---FERAQAVWRKKFGALPQTPAERAKQARFLAARGFSSATIVKLLKVG 302 (309)
T ss_pred CHHHHHHHHHhccHhH---HHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 3445555555543322 34444444433211111 13567899999999999888888644
No 24
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=22.71 E-value=58 Score=30.95 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=22.9
Q ss_pred cceEEEEcCCCcHHHHHHHhhhccChhccc
Q psy13101 303 LGRVLIIRAPRVFPILWTLVSTFIDETTRS 332 (420)
Q Consensus 303 l~~i~IvN~P~~f~~~~~lvkpfL~~~t~~ 332 (420)
=..++|||+||-+....+-+.|+|.+....
T Consensus 205 GSGm~iiNPPw~l~~~l~~~l~~L~~~L~~ 234 (245)
T PF04378_consen 205 GSGMLIINPPWTLDEELEEILPWLAETLAQ 234 (245)
T ss_dssp EEEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred cceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence 357999999999999998888888776554
No 25
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=22.64 E-value=63 Score=30.86 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=24.1
Q ss_pred ceEEEEcCCCcHHHHHHHhhhccChhcc
Q psy13101 304 GRVLIIRAPRVFPILWTLVSTFIDETTR 331 (420)
Q Consensus 304 ~~i~IvN~P~~f~~~~~lvkpfL~~~t~ 331 (420)
..++|||+||-+.--...+-|+|.....
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L~ 264 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLLA 264 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999876644
No 26
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=21.91 E-value=79 Score=27.55 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcccccc--eEEEEcCCCcHHHHHHHhhhccCh--hccceEEE----------ecCCCcCchhHHHhccc
Q psy13101 288 LLRIIEIVETNYPETLG--RVLIIRAPRVFPILWTLVSTFIDE--TTRSKFLV----------YAGNDYQSAGGLIDYIE 353 (420)
Q Consensus 288 ~k~~~~~lq~~YPerl~--~i~IvN~P~~f~~~~~lvkpfL~~--~t~~KI~~----------~~~~~~~~~~~L~~~I~ 353 (420)
.+.++..+-.+||.-++ ..-++|++=.|.++|+-+ |-++. +-|+.|+. ...+|++-.++|.+.|+
T Consensus 17 y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~~~kERKQIRLs~dcI~kL~~nT~NdfKLY~Elf~~i~ 95 (159)
T PF04838_consen 17 YKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSNVEKERKQIRLSEDCIEKLFVNTINDFKLYEELFDMID 95 (159)
T ss_pred HHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCchHhHHHHHhhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 45678999999999999 899999999999999876 45555 44444544 12335544457777777
Q ss_pred cCC
Q psy13101 354 QQY 356 (420)
Q Consensus 354 ~~~ 356 (420)
.+.
T Consensus 96 ~~~ 98 (159)
T PF04838_consen 96 DNK 98 (159)
T ss_pred ccC
Confidence 544
No 27
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=20.72 E-value=3.1e+02 Score=20.46 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=28.7
Q ss_pred EEEEECCCCCcCCccchhHHHHHHHHHHHHhhcc--cccceEEEEcCCCcHHHHH
Q psy13101 267 SLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYP--ETLGRVLIIRAPRVFPILW 319 (420)
Q Consensus 267 v~IiDl~g~sl~~~~~~~~~~~k~~~~~lq~~YP--erl~~i~IvN~P~~f~~~~ 319 (420)
.+++|+.|+..- +.+++-.++.-+...|| +.-.++.++|+......+.
T Consensus 19 ~V~lDF~gv~~~-----~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I 68 (74)
T PF14213_consen 19 KVVLDFEGVESI-----TSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMI 68 (74)
T ss_pred eEEEECCCcccc-----cHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHH
Confidence 589999999432 12344444554445555 4455677777766555443
Done!