Query psy13101
Match_columns 420
No_of_seqs 264 out of 1620
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 19:33:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 7.6E-51 2.6E-55 399.5 22.0 266 48-375 24-290 (320)
2 1aua_A Phosphatidylinositol tr 100.0 2.4E-50 8.1E-55 392.4 24.4 263 48-378 15-278 (296)
3 1olm_A SEC14-like protein 2; l 100.0 1.5E-49 5.1E-54 402.8 27.3 261 53-383 2-272 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 5E-47 1.7E-51 372.1 18.5 237 51-367 46-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 3.2E-47 1.1E-51 363.5 10.9 253 57-389 2-257 (262)
6 3pg7_A Neurofibromin; SEC lipi 98.9 8.9E-10 3E-14 104.0 6.9 128 206-357 16-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.7 1.9E-08 6.5E-13 96.4 5.9 127 206-356 35-162 (290)
8 1wgl_A TOLL-interacting protei 82.2 2.7 9.2E-05 29.6 5.3 39 64-108 10-48 (59)
9 2dal_A Protein KIAA0794; FAS a 80.8 5.1 0.00017 28.4 6.4 44 56-106 8-51 (62)
10 2dam_A ETEA protein; KIAA0887, 79.1 5.8 0.0002 28.6 6.3 44 57-106 12-55 (67)
11 3q8g_A CRAL-TRIO domain-contai 70.5 1.4 4.7E-05 42.2 1.4 45 131-175 115-159 (320)
12 2dhy_A CUE domain-containing p 70.5 8.1 0.00028 27.9 5.1 41 63-109 18-58 (67)
13 1aua_A Phosphatidylinositol tr 67.1 2.4 8.3E-05 39.7 2.3 44 133-176 102-145 (296)
14 1z96_A DNA-damage, UBA-domain 66.2 11 0.00039 23.5 4.8 36 63-106 4-39 (40)
15 2dah_A Ubiquilin-3; UBA domain 65.5 16 0.00055 25.0 5.7 39 64-109 10-48 (54)
16 1wr1_B Ubiquitin-like protein 64.0 16 0.00055 25.5 5.5 38 64-108 18-55 (58)
17 2dna_A Unnamed protein product 63.3 20 0.00067 25.9 6.0 38 64-108 20-57 (67)
18 1vej_A Riken cDNA 4931431F19; 62.0 17 0.00059 26.7 5.6 37 64-107 30-66 (74)
19 1v92_A NSFL1 cofactor P47; 3-h 61.8 16 0.00055 23.7 5.0 37 63-106 5-41 (46)
20 1oai_A Nuclear RNA export fact 57.3 46 0.0016 23.2 7.1 45 59-110 3-47 (59)
21 1otr_A Protein CUE2; protein-p 53.6 20 0.00068 24.1 4.3 40 64-109 5-44 (49)
22 2di0_A Activating signal coint 52.1 28 0.00095 25.4 5.1 42 61-108 11-52 (71)
23 2cp8_A NEXT to BRCA1 gene 1 pr 50.7 35 0.0012 23.4 5.2 37 66-109 12-48 (54)
24 2knz_A Ubiquilin-4; cytoplasm, 50.1 36 0.0012 23.0 5.3 27 82-108 23-49 (53)
25 2cwb_A Chimera of immunoglobul 50.0 20 0.00068 28.4 4.5 38 64-108 67-104 (108)
26 2jp7_A MRNA export factor MEX6 49.7 54 0.0018 22.7 6.2 43 59-108 2-44 (57)
27 2bwb_A Ubiquitin-like protein 47.4 24 0.00081 23.2 3.9 26 82-107 19-44 (46)
28 3e21_A HFAF1, FAS-associated f 47.0 37 0.0013 22.3 4.8 35 63-104 5-40 (45)
29 2jy5_A Ubiquilin-1; UBA, alter 43.6 40 0.0014 22.7 4.7 36 65-107 14-49 (52)
30 1ufz_A Hypothetical protein BA 41.1 1.1E+02 0.0038 22.9 7.1 40 65-109 36-75 (83)
31 1q02_A Sequestosome 1; helical 38.8 70 0.0024 21.7 5.1 23 85-107 26-48 (52)
32 3lay_A Zinc resistance-associa 36.6 31 0.0011 29.8 4.0 63 55-117 64-130 (175)
33 1ify_A HHR23A, UV excision rep 34.9 97 0.0033 20.4 5.6 25 84-108 21-45 (49)
34 2dae_A KIAA0733 protein; mitog 31.5 67 0.0023 23.3 4.3 39 65-109 12-50 (75)
35 1vg5_A RSGI RUH-014, rhomboid 29.2 44 0.0015 24.4 3.2 41 59-107 25-65 (73)
36 2dzl_A Protein FAM100B; UBA-li 27.0 59 0.002 23.1 3.5 35 65-106 19-53 (66)
37 1wgn_A UBAP1, ubiquitin associ 26.5 1.1E+02 0.0037 21.6 4.5 44 55-106 11-54 (63)
38 2qsf_X RAD23, UV excision repa 26.4 99 0.0034 26.5 5.4 45 55-107 122-166 (171)
39 2q3l_A Uncharacterized protein 26.4 1.4E+02 0.0049 23.6 6.2 79 232-329 30-111 (126)
40 3itf_A Periplasmic adaptor pro 24.8 2E+02 0.0067 23.8 6.9 60 58-117 45-105 (145)
41 3o39_A Periplasmic protein rel 24.7 1.2E+02 0.0039 23.9 5.1 60 58-117 17-77 (108)
42 1veg_A NEDD8 ultimate buster-1 21.8 2.3E+02 0.0077 21.1 6.0 38 64-109 30-67 (83)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=7.6e-51 Score=399.52 Aligned_cols=266 Identities=25% Similarity=0.446 Sum_probs=226.7
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcChhhhhhhcCC
Q psy13101 48 EDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEA 127 (420)
Q Consensus 48 ~~~~~~~~l~~l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~d~i~~~~~~ 127 (420)
+++...+++++++++|+++|++||+|+++.+.....||.+|+||||||+||+++|.++|+++++||+++++|+++.++.+
T Consensus 24 ~~~~~~g~~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 24 SPNALPGTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp CTTSCTTSTTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 34467889999999999999999999999876667899999999999999999999999999999999999998866432
Q ss_pred chhhhhhccCcccccCCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchhhcccccccc
Q psy13101 128 PPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHH 207 (420)
Q Consensus 128 ~~~~~~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~~~~p~~~~g 207 (420)
+..... .+ . +.+..++|++++|
T Consensus 104 ~~~~~~-----------------------------------~e-------------~----------~~~~~~~~~~~~g 125 (320)
T 3q8g_A 104 NKEAED-----------------------------------KE-------------R----------IKLAKMYPQYYHH 125 (320)
T ss_dssp THHHHH-----------------------------------HH-------------H----------HHHHTTSCEEEEE
T ss_pred ccccch-----------------------------------hH-------------H----------HHHHHhCCceecC
Confidence 210000 00 0 0123345667789
Q ss_pred cCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHh-hHHHHhhcCCCcccEEEEEECCCCCcCCccchhHH
Q psy13101 208 CDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLAL-TEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVK 286 (420)
Q Consensus 208 ~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~~ 286 (420)
+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++. ++.+++..|.+++++++|+|++|+|++++++. ++
T Consensus 126 ~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~-~~ 204 (320)
T 3q8g_A 126 VDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV-LS 204 (320)
T ss_dssp ECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHT-HH
T ss_pred CCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHH-HH
Confidence 99999999999999999998887789999999999999998753 45567778888999999999999999998653 67
Q ss_pred HHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCCCC
Q psy13101 287 ALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCE 366 (420)
Q Consensus 287 ~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~~~ 366 (420)
.++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|+ ++++. ++|.++||+++||++|||+++
T Consensus 205 ~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~-~~~~~--~~L~~~i~~~~LP~~yGG~~~ 281 (320)
T 3q8g_A 205 YIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFIL-GSSYK--KELLKQIPIENLPVKYGGTSV 281 (320)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEEC-CTTHH--HHHHHHSCGGGSBGGGTSCBC
T ss_pred HHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEe-CCCcH--HHHHhhCChhhCChhhCCCCC
Confidence 889999999999999999999999999999999999999999999999997 45543 489999999999999999999
Q ss_pred cCCCCCCcC
Q psy13101 367 TKLPEGGLL 375 (420)
Q Consensus 367 ~~~~~~~~~ 375 (420)
+....+||.
T Consensus 282 ~~~~~ggc~ 290 (320)
T 3q8g_A 282 LHNPNDKFY 290 (320)
T ss_dssp CSSTTSCGG
T ss_pred CCCCCCCee
Confidence 865556665
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=2.4e-50 Score=392.37 Aligned_cols=263 Identities=26% Similarity=0.449 Sum_probs=225.4
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcChhhhhhhcCC
Q psy13101 48 EDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEA 127 (420)
Q Consensus 48 ~~~~~~~~l~~l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~d~i~~~~~~ 127 (420)
++....+++++++++|+++|++||+|+.+.+.....||.+|+||||||+||+++|.++|++|++||+++++++++.++++
T Consensus 15 ~~~~~~~~~~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~ 94 (296)
T 1aua_A 15 PPDALPGTPGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHY 94 (296)
T ss_dssp CTTSCTTSTTTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCC
T ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhcccc
Confidence 33456778999999999999999999998876556799999999999999999999999999999999999998876542
Q ss_pred chhhhhhccCcccccCCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchhhcccccccc
Q psy13101 128 PPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHH 207 (420)
Q Consensus 128 ~~~~~~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~~~~p~~~~g 207 (420)
++. +.+..++|++++|
T Consensus 95 ~~~----------------------------------------------------------------~~~~~~~~~~~~g 110 (296)
T 1aua_A 95 DEK----------------------------------------------------------------PLIAKFYPQYYHK 110 (296)
T ss_dssp TTH----------------------------------------------------------------HHHGGGSCCEEEE
T ss_pred CcH----------------------------------------------------------------HHHHHhCCceecc
Confidence 210 0122345556789
Q ss_pred cCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHh-hHHHHhhcCCCcccEEEEEECCCCCcCCccchhHH
Q psy13101 208 CDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLAL-TEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVK 286 (420)
Q Consensus 208 ~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~~ 286 (420)
+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++. ++.+++..|.+++++++|+|++|+|++|+++. ++
T Consensus 111 ~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~-~~ 189 (296)
T 1aua_A 111 TDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MS 189 (296)
T ss_dssp ECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH-HH
T ss_pred cCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH-HH
Confidence 99999999999999999998888889999999999999998764 34455667888999999999999999998653 67
Q ss_pred HHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCCCC
Q psy13101 287 ALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCE 366 (420)
Q Consensus 287 ~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~~~ 366 (420)
.++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ +++. ++|.++||+++||++|||+++
T Consensus 190 ~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~-~~~~--~~L~~~i~~~~LP~~yGG~~~ 266 (296)
T 1aua_A 190 YVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILG-SSYQ--KELLKQIPAENLPVKFGGKSE 266 (296)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECC-SCCH--HHHTTTSCSSSSBGGGTSCBC
T ss_pred HHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeC-cccH--HHHHhhCCHhhCcHHhCCCCC
Confidence 8899999999999999999999999999999999999999999999999974 5553 389999999999999999998
Q ss_pred cCCCCCCcCCCC
Q psy13101 367 TKLPEGGLLPFL 378 (420)
Q Consensus 367 ~~~~~~~~~p~~ 378 (420)
+...++|+....
T Consensus 267 ~~~~~~g~~~~~ 278 (296)
T 1aua_A 267 VDESKGGLYLSD 278 (296)
T ss_dssp CCGGGCCSTTCC
T ss_pred CCCCCCCceeCC
Confidence 865445665443
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.5e-49 Score=402.78 Aligned_cols=261 Identities=30% Similarity=0.583 Sum_probs=228.6
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhhhh-CCCCCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcChhhhhhhcCCchhh
Q psy13101 53 HRCLGDLTPMQESKLIQFKKQFGYLQ-KGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVV 131 (420)
Q Consensus 53 ~~~l~~l~~~~~~~l~~lr~~l~~~~-~~~~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~d~i~~~~~~~~~~ 131 (420)
++++++++++|+++|++||+++.+.. ++...||.+|+||||||+||+++|.++|+++++||++++++++++ +..++.+
T Consensus 2 ~g~~~~l~~~q~~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~ 80 (403)
T 1olm_A 2 SGRVGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVI 80 (403)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHH
Confidence 46789999999999999999999874 445679999999999999999999999999999999999888765 3333322
Q ss_pred hhhccCcccccCCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchhhcccccccccCCC
Q psy13101 132 RAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDRE 211 (420)
Q Consensus 132 ~~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~~~~p~~~~g~D~~ 211 (420)
+ .+++++++|+|++
T Consensus 81 ~------------------------------------------------------------------~~~~~~~~g~Dk~ 94 (403)
T 1olm_A 81 Q------------------------------------------------------------------QYLSGGMCGYDLD 94 (403)
T ss_dssp H------------------------------------------------------------------HHCCBEEEEECTT
T ss_pred H------------------------------------------------------------------HhCCceeeccCCC
Confidence 2 2334456899999
Q ss_pred CCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccchhHHHHHHH
Q psy13101 212 MRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRI 291 (420)
Q Consensus 212 GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~~~~k~~ 291 (420)
||||+++++|.+|++++.+.++.++++|++++++|.++..+..+++..|.+++++++|+|++|++++|++++.++.++.+
T Consensus 95 GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~ 174 (403)
T 1olm_A 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEF 174 (403)
T ss_dssp SCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHH
T ss_pred cCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHH
Confidence 99999999999999988888899999999999999999887777667788899999999999999999988888899999
Q ss_pred HHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCCCCcC---
Q psy13101 292 IEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETK--- 368 (420)
Q Consensus 292 ~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~--- 368 (420)
++++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ +++. +.|.++||+++||++|||+++++
T Consensus 175 ~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~-~~~~--~~L~~~I~~~~LP~~yGG~~~~~~~~ 251 (403)
T 1olm_A 175 LCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG-ANWK--EVLLKHISPDQVPVEYGGTMTDPDGN 251 (403)
T ss_dssp HHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECC-TTHH--HHHTTTSCGGGSBGGGTSSBCCTTCC
T ss_pred HHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEC-hhHH--HHHHhhcChhhCchhhCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999974 4543 48999999999999999998653
Q ss_pred ------CCCCCcCCCCCccch
Q psy13101 369 ------LPEGGLLPFLLPFCR 383 (420)
Q Consensus 369 ------~~~~~~~p~~~~~~~ 383 (420)
+..+|.+|+.++..+
T Consensus 252 ~~c~~~i~~gg~vp~~~~~~~ 272 (403)
T 1olm_A 252 PKCKSKINYGGDIPRKYYVRD 272 (403)
T ss_dssp TTCTTTCBCCCCCCGGGCSCS
T ss_pred cccccccccCCCCCcccccCC
Confidence 234677888877644
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=5e-47 Score=372.08 Aligned_cols=237 Identities=17% Similarity=0.345 Sum_probs=193.8
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhhhhCC------------CCCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcCh
Q psy13101 51 YIHRCLGDLTPMQESKLIQFKKQFGYLQKG------------KLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNV 118 (420)
Q Consensus 51 ~~~~~l~~l~~~~~~~l~~lr~~l~~~~~~------------~~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~ 118 (420)
.|+.+|+|.++.++++|++||+||.++++. ...||.+|+||||||+||+++|.++|++|++||++++
T Consensus 46 ~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~- 124 (316)
T 3hx3_A 46 KAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP- 124 (316)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG-
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc-
Confidence 778899999999999999999999999874 3469999999999999999999999999999999996
Q ss_pred hhhhhhcCCchhhhhhccCcccccCCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchh
Q psy13101 119 DQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVR 198 (420)
Q Consensus 119 d~i~~~~~~~~~~~~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~ 198 (420)
+++++..+ +.++.. +.
T Consensus 125 -~~~~~~~~-~~i~~~--------------------------------------------------------------l~ 140 (316)
T 3hx3_A 125 -ELFDSLSP-EAVRCT--------------------------------------------------------------IE 140 (316)
T ss_dssp -GGTTTCCH-HHHHHH--------------------------------------------------------------HH
T ss_pred -hhhcCCCH-HHHHHH--------------------------------------------------------------HH
Confidence 45543221 111111 11
Q ss_pred hcccccccccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcC
Q psy13101 199 AYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMR 278 (420)
Q Consensus 199 ~~~p~~~~g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~ 278 (420)
..++.+++|+|++||||+++++|++|+++ ++.++++|++++++|.++.... .+++|+++|+|++|+|++
T Consensus 141 ~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~~~-------~~v~g~v~IiD~~g~sl~ 209 (316)
T 3hx3_A 141 AGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLENEE-------TQINGFCIIENFKGFTMQ 209 (316)
T ss_dssp TTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTSHH-------HHHHCEEEEEECTTCCHH
T ss_pred cCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhccc-------CCcceEEEEEECCCCCHH
Confidence 22333468999999999999999999874 6889999999999999875322 246789999999999999
Q ss_pred CccchhHHHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCC
Q psy13101 279 HLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIP 358 (420)
Q Consensus 279 ~~~~~~~~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP 358 (420)
|+++.+++.++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|+ +++++ +|.++||+++||
T Consensus 210 ~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~-~~~~~---~L~~~I~~~~LP 285 (316)
T 3hx3_A 210 QAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVH-GDDLS---GFYQEIDENILP 285 (316)
T ss_dssp HHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEE-ETCCH---HHHHHSCGGGSB
T ss_pred HhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEe-CCCHH---HHHhhCCHhhCc
Confidence 98777788899999999999999999999999999999999999999999999999996 55553 799999999999
Q ss_pred ccCCCCCCc
Q psy13101 359 DFLGGPCET 367 (420)
Q Consensus 359 ~~yGG~~~~ 367 (420)
++|||++++
T Consensus 286 ~eyGG~~~~ 294 (316)
T 3hx3_A 286 SDFGGTLPK 294 (316)
T ss_dssp GGGTSSBCC
T ss_pred HhhCCCCCC
Confidence 999999984
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=3.2e-47 Score=363.54 Aligned_cols=253 Identities=18% Similarity=0.319 Sum_probs=201.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhC---CCCCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcChhhhhhhcCCchhhhh
Q psy13101 57 GDLTPMQESKLIQFKKQFGYLQK---GKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRA 133 (420)
Q Consensus 57 ~~l~~~~~~~l~~lr~~l~~~~~---~~~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~d~i~~~~~~~~~~~~ 133 (420)
+++++.++++|++||+++.+... ....||.+|+||||||+||+++|.++|++|++||++++ +++.++.+++ +.+
T Consensus 2 ~~ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~~~~~~~~-~~~ 78 (262)
T 1r5l_A 2 SHMSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EISADLHPRS-IIG 78 (262)
T ss_dssp -------CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHHSCCCGGG-THH
T ss_pred CCccHHHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--HhhhcCChHH-HHH
Confidence 46888999999999999998763 23568999999999999999999999999999999985 4554433221 111
Q ss_pred hccCcccccCCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchhhcccccccccCCCCC
Q psy13101 134 YFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMR 213 (420)
Q Consensus 134 ~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~~~~p~~~~g~D~~Gr 213 (420)
.+ ...++.+++|+|++||
T Consensus 79 ~~--------------------------------------------------------------~~g~~~~l~g~D~~Gr 96 (262)
T 1r5l_A 79 LL--------------------------------------------------------------KAGYHGVLRSRDPTGS 96 (262)
T ss_dssp HH--------------------------------------------------------------HTTCEEECSSCCTTCC
T ss_pred HH--------------------------------------------------------------HcCCccCCCCcCCCCC
Confidence 11 1112234689999999
Q ss_pred cEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccchhHHHHHHHHH
Q psy13101 214 PLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIE 293 (420)
Q Consensus 214 pV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~~~~k~~~~ 293 (420)
||+++++|.+|++. ++.++++++.++++|.++...+ + ++.|+++|+|++|+|++|+++++++.++.+++
T Consensus 97 pV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~~~--~-----~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~ 165 (262)
T 1r5l_A 97 KVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQEVE--T-----QRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 165 (262)
T ss_dssp EEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTSHH--H-----HHHCEEEEEECTTCCHHHHHHCCHHHHHHHHH
T ss_pred EEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhChh--h-----cccceEEEEECCCCCHHHHhccCHHHHHHHHH
Confidence 99999999999874 5788999999999998765432 1 24678999999999999987777889999999
Q ss_pred HHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCCCCcCCCCCC
Q psy13101 294 IVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGG 373 (420)
Q Consensus 294 ~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~~~~~~ 373 (420)
++|++||+|++++||||+|++|+++|+++||||+++|++||+|+ ++++. ++|.++|| ++||++|||+++...+...
T Consensus 166 ~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~-~~~~~--~~L~~~i~-~~LP~~yGG~~~~~~~~~~ 241 (262)
T 1r5l_A 166 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH-GNNYK--QSLLQHFP-DILPLEYGGEEFSMEDICQ 241 (262)
T ss_dssp HHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEEC-CSSCH--HHHHHHST-TTSCGGGTCSSCCHHHHHH
T ss_pred HHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEe-CCCcH--HHHHHHhh-hhCcHhhCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 45543 48999999 9999999999975433345
Q ss_pred cCCCCCccchhhHHHH
Q psy13101 374 LLPFLLPFCRRKLSKI 389 (420)
Q Consensus 374 ~~p~~~~~~~~~~~~~ 389 (420)
.|.+.+..+++.+.++
T Consensus 242 ~w~~~l~~~~~~~~~~ 257 (262)
T 1r5l_A 242 EWTNFIMKSEDYLSSI 257 (262)
T ss_dssp HHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6776666666665554
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=98.94 E-value=8.9e-10 Score=104.00 Aligned_cols=128 Identities=9% Similarity=0.089 Sum_probs=102.1
Q ss_pred cccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccchhH
Q psy13101 206 HHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGV 285 (420)
Q Consensus 206 ~g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~ 285 (420)
.|.|++||||+++.+.+++.. ..+.+.++.+++..++... -....+|+|+.+++..+. +++
T Consensus 16 ~G~d~dGrpViv~~~~~l~~~----~~D~e~Ll~~vl~tl~~~~-------------~~~y~lV~d~T~~~~~n~--p~~ 76 (256)
T 3pg7_A 16 AGTSKAGNPIFYYVARRFKTG----QINGDLLIYHVLLTLKPYY-------------AKPYEIVVDLTHTGPSNR--FKT 76 (256)
T ss_dssp EEECTTSCEEEEEEGGGCCBT----TBCHHHHHHHHHHHHTTTT-------------TSCEEEEEECTTCCGGGC--CCH
T ss_pred cCcCCCCCEEEEEEeecCCCC----CCCHHHHHHHHHHHHHHhc-------------CCCeEEEEECCCCCcccC--CcH
Confidence 489999999999999998765 3566767666665555432 135799999999998765 568
Q ss_pred HHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHh-hhccChhccceEEEecCCCcCchhHHHhccccCCC
Q psy13101 286 KALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLV-STFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYI 357 (420)
Q Consensus 286 ~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lv-kpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~L 357 (420)
+.++.+.+++...|...++++||+|++++|...++.+ ++|.+.+..+|+.+++ + .++|.++|+.++|
T Consensus 77 ~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~-s----l~eL~~~i~~~~L 144 (256)
T 3pg7_A 77 DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID-C----PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES-S----TTGGGGTSCGGGC
T ss_pred HHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC-C----HHHHHhhcCHHHc
Confidence 8899999999999999999999999999999776654 5566668889999984 3 2389999976654
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.66 E-value=1.9e-08 Score=96.37 Aligned_cols=127 Identities=9% Similarity=0.076 Sum_probs=93.2
Q ss_pred cccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECCCCCcCCccchhH
Q psy13101 206 HHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGV 285 (420)
Q Consensus 206 ~g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~ 285 (420)
.|.|++|+||+++.+++++.. ..+.+.++-+++..++... -...++|+|+.+++..+- ++.
T Consensus 35 ~g~d~dG~PViv~~~~~~~~~----~~D~e~Lly~il~tl~~~~-------------~~~y~lV~D~T~~~~~n~--p~~ 95 (290)
T 3peg_A 35 AGTSKAGNPIFYYVARRFKTG----QINGDLLIYHVLLTLKPYY-------------AKPYEIVVDLTHTGPSNR--FKT 95 (290)
T ss_dssp EEECTTSCEEEEEEGGGCCBT----TBCHHHHHHHHHHHHTTTT-------------TSCEEEEEECTTCCGGGC--CCH
T ss_pred eccCCCCCEEEEEEeecCCcc----CCCHHHHHHHHHHHHHHhc-------------CCCeEEEEEcCCCCccCC--ChH
Confidence 378999999999999999865 3566666655555544332 135799999999998764 567
Q ss_pred HHHHHHHHHHHhhcccccceEEEEcCCCcHHHHH-HHhhhccChhccceEEEecCCCcCchhHHHhccccCC
Q psy13101 286 KALLRIIEIVETNYPETLGRVLIIRAPRVFPILW-TLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQY 356 (420)
Q Consensus 286 ~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~-~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~ 356 (420)
+.++.+.+++...|+..++++||+|++++|...+ ...++|.+.+..+|+.++. + . ..|..++++++
T Consensus 96 ~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~-~-~---~~L~~~i~~~~ 162 (290)
T 3peg_A 96 DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID-C-P---GKLAEHIEHEQ 162 (290)
T ss_dssp HHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEES-S-S---CC---------
T ss_pred HHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcC-C-H---HHHHhhCCHHH
Confidence 8899999999999999999999999999998755 5678888888899998874 2 1 15888887764
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.25 E-value=2.7 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
+++++.|++++-. .|...+..-|++++.|++.|+..|.+
T Consensus 10 ee~l~~L~emFP~------ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPN------MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSS------SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC------CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4677888877542 46888999999999999999998874
No 9
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.79 E-value=5.1 Score=28.42 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 56 LGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 56 l~~l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l 106 (420)
+..+++.+++.+.+|..... .+......||.+++||++.|+..+
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg-------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITG-------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTC-------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHhC-------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46778888888888886543 247788999999999999998654
No 10
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.09 E-value=5.8 Score=28.64 Aligned_cols=44 Identities=30% Similarity=0.396 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 57 GDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 57 ~~l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l 106 (420)
.+|+..+++.|.+|..... ..+......||..++||++.|+..+
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg------~~d~~~A~~~Le~~~WnLe~Av~~f 55 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTG------IESMDQCRHTLEQHNWNIEAAVQDR 55 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHC------CSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhC------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5788999999998887754 1246778999999999999998654
No 11
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=70.55 E-value=1.4 Score=42.19 Aligned_cols=45 Identities=29% Similarity=0.572 Sum_probs=36.8
Q ss_pred hhhhccCcccccCCCCCcceeeeccccccccccccccchhhhhhh
Q psy13101 131 VRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLS 175 (420)
Q Consensus 131 ~~~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~ 175 (420)
+.++++.+++++|+.|+||++..+|.+|.+.+++....++++|..
T Consensus 115 ~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~l 159 (320)
T 3q8g_A 115 LAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNL 159 (320)
T ss_dssp HHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHH
T ss_pred HHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHH
Confidence 456778888999999999999999999998887766666666644
No 12
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.46 E-value=8.1 Score=27.93 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 63 QESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 63 ~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
.++++++|++++-. .|...+..-|++++.|++.|+..|.+.
T Consensus 18 ~~~~v~~L~~MFP~------lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 18 FNQAMDDFKTMFPN------MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SHHHHHHHHHHCSS------SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC------CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34567788877543 467888899999999999999988754
No 13
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=67.08 E-value=2.4 Score=39.69 Aligned_cols=44 Identities=25% Similarity=0.571 Sum_probs=35.4
Q ss_pred hhccCcccccCCCCCcceeeeccccccccccccccchhhhhhhh
Q psy13101 133 AYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSL 176 (420)
Q Consensus 133 ~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~ 176 (420)
++++.+++++|+.|+||++..+|.+|.+.+++....+++++..+
T Consensus 102 ~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~ 145 (296)
T 1aua_A 102 KFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLV 145 (296)
T ss_dssp GGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHH
T ss_pred HhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHH
Confidence 35677788999999999999999999988877777776666443
No 14
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=66.17 E-value=11 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 63 QESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 63 ~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l 106 (420)
.+++|++|.++ + .+.....+-|+++++|++.|...|
T Consensus 4 ~~~~i~~L~~m----G----f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 4 LNSKIAQLVSM----G----FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHT----T----CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHc----C----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34456555543 1 245666888999999999998754
No 15
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.47 E-value=16 Score=25.02 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
+++|++|+++ -+.++..-++=|+++++|+++|...|...
T Consensus 10 ~~~l~~L~~M-------GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM-------GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH-------TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3456777655 24556667899999999999999887643
No 16
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=63.99 E-value=16 Score=25.47 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
+++|++|+++ -+.++...++=|+++++|+++|.+.|..
T Consensus 18 ~~qi~~L~~M-------GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-------GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-------TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4466666655 2456677789999999999999988764
No 17
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.32 E-value=20 Score=25.87 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
+++|++|+++ -+.++..-++=|++++.|+++|+..|..
T Consensus 20 ~~ql~qL~~M-------GF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAM-------GFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHH-------TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3466666654 2456777789999999999999987764
No 18
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=62.01 E-value=17 Score=26.69 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLS 107 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~ 107 (420)
+++|++|+++ -+.++...++=|++.++|+++|++.|.
T Consensus 30 e~qi~qL~eM-------GF~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 30 QQELEELKAL-------GFANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp HHHHHHHHHH-------TCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4567777765 245667778999999999999998765
No 19
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=61.79 E-value=16 Score=23.70 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 63 QESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 63 ~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l 106 (420)
+++.+.+|...-. .+......||.+++||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg-------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG-------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC-------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC-------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5566777775432 257888999999999999998654
No 20
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=57.30 E-value=46 Score=23.17 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13101 59 LTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSL 110 (420)
Q Consensus 59 l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~~ 110 (420)
+++++++.+.+|.+.-. .+-.+-.++|...+||.++|.+.+.+-.
T Consensus 3 ls~~q~~mv~~~s~~Tg-------mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 3 LSPEQQEMLQAFSTQSG-------MNLEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 67777777777665422 3578889999999999999999887643
No 21
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=53.60 E-value=20 Score=24.13 Aligned_cols=40 Identities=28% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
++.++.|.+.+-. .+...+.+-|+++++|+++|...|.+-
T Consensus 5 e~~v~~L~EMFP~------~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMFPA------ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHCSS------SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC------CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3455555555432 356778889999999999999998754
No 22
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=52.08 E-value=28 Score=25.38 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 61 PMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 61 ~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
.+....|.++++.+-. ..+.|+.+.|..++.|+|.+...|.+
T Consensus 11 ~~l~s~I~qV~DLfPd------LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 11 VELDSLISQVKDLLPD------LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHHCCS------SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccc------CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4556677888877653 35899999999999999999987764
No 23
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.66 E-value=35 Score=23.41 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 66 KLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 66 ~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
.+++|+++ -+.|...=.+-|+..++|+++|+..|...
T Consensus 12 ~L~~L~eM-------GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 12 LMAHLFEM-------GFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHH-------TCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHc-------CCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45566554 36678888899999999999999887643
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=50.10 E-value=36 Score=23.02 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=22.7
Q ss_pred CCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 82 LPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 82 ~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
+.+....++=|+++++|+++|.+.|..
T Consensus 23 F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 23 FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557778889999999999999987754
No 25
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=49.98 E-value=20 Score=28.44 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
++.|++|+++ -+.++...++=|+++++|+++|++.|..
T Consensus 67 ~~qL~qL~eM-------GF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDM-------GIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTT-------TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4455555533 3456778889999999999999998764
No 26
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=49.74 E-value=54 Score=22.67 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 59 LTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 59 l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
|++.+++.+.+|.+.-. .+-.+-.++|...+||.++|.+.+.+
T Consensus 2 l~~~q~~mv~~~s~~T~-------Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 2 LNPVQLELLNKLHLETK-------LNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CCHHHHHHHHHHHHHHC-------SCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 67777777777765422 35788899999999999999998887
No 27
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=47.36 E-value=24 Score=23.25 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=21.6
Q ss_pred CCChHHHHHHHhhCCCCHHHHHHHHH
Q psy13101 82 LPSDSTLLRFLKSKDFNLEKGRESLS 107 (420)
Q Consensus 82 ~~dd~~LlRFLra~k~dve~A~~~l~ 107 (420)
+.++...++=|+++++|+++|...|.
T Consensus 19 F~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45666778999999999999998764
No 28
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=47.04 E-value=37 Score=22.30 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhhhCCCCCCh-HHHHHHHhhCCCCHHHHHH
Q psy13101 63 QESKLIQFKKQFGYLQKGKLPSD-STLLRFLKSKDFNLEKGRE 104 (420)
Q Consensus 63 ~~~~l~~lr~~l~~~~~~~~~dd-~~LlRFLra~k~dve~A~~ 104 (420)
+.+.|++|.+.-. .+| .....||.+++||++.|..
T Consensus 5 ~de~ia~F~~iTG-------~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 5 REMILADFQACTG-------IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHHC-------CCCHHHHHHHHHHcCCcHHHHHH
Confidence 4566777766433 234 6778999999999999975
No 29
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=43.56 E-value=40 Score=22.72 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHH
Q psy13101 65 SKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLS 107 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~ 107 (420)
++|++|+++ -+.+....++=|+++++|+++|.+.|.
T Consensus 14 ~~l~~L~~M-------GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 14 QQLEQLSAM-------GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHT-------TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHc-------CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455555543 244677778889999999999998764
No 30
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=41.08 E-value=1.1e+02 Score=22.85 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 65 SKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
..+.++|..+.+. ..+..|.+=...++||+++|...+.+-
T Consensus 36 SCLd~iR~VlGds-----V~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 36 SCLDHMREVLGDA-----VPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHTTTT-----SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc-----CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3567777776642 358889999999999999999887654
No 31
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=38.79 E-value=70 Score=21.69 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=20.4
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHH
Q psy13101 85 DSTLLRFLKSKDFNLEKGRESLS 107 (420)
Q Consensus 85 d~~LlRFLra~k~dve~A~~~l~ 107 (420)
-.+|-|.|.+.++|+.+|...|.
T Consensus 26 gGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 26 GGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccHHHHHHHHccCCHHHHHHHhh
Confidence 46899999999999999998775
No 32
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.56 E-value=31 Score=29.75 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=44.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhCC---CC-CChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcC
Q psy13101 55 CLGDLTPMQESKLIQFKKQFGYLQKG---KL-PSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHN 117 (420)
Q Consensus 55 ~l~~l~~~~~~~l~~lr~~l~~~~~~---~~-~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~ 117 (420)
..-+||++|+++++++++........ .. .....|..-+.+-++|.+++.+..++.-+.|.+..
T Consensus 64 ~~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 64 GGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44679999999999998877654321 00 12345666777899999999999999888888653
No 33
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.93 E-value=97 Score=20.40 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=20.5
Q ss_pred ChHHHHHHHhhCCCCHHHHHHHHHH
Q psy13101 84 SDSTLLRFLKSKDFNLEKGRESLSQ 108 (420)
Q Consensus 84 dd~~LlRFLra~k~dve~A~~~l~~ 108 (420)
+.....+=||++++|+++|...|..
T Consensus 21 ~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 21 ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5677788899999999999887653
No 34
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.53 E-value=67 Score=23.27 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 65 SKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
+.+.+||+.+.+.+ |..+-.+++..+.|.+.+.++|.+-
T Consensus 12 qvfheLkQrFPEvP------d~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 12 QVLHDLRQKFPEVP------EVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHSSSSC------HHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHhcccCc------HHHHHHHHHHhccCHHHHHHHHHHh
Confidence 46788888877643 8889999999999999999998753
No 35
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.19 E-value=44 Score=24.38 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHH
Q psy13101 59 LTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLS 107 (420)
Q Consensus 59 l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~ 107 (420)
.++..+++|++|.++ . .+.....+=|+++++|+++|...|.
T Consensus 25 ~~~~~ee~I~~L~eM----G----F~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 25 RVAASEEQIQKLVAM----G----FDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CSCCCHHHHHHHHTT----T----CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHc----C----CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 344445566555533 1 3567777889999999999987665
No 36
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.04 E-value=59 Score=23.11 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 65 SKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 65 ~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l 106 (420)
+.+.+|...-. .++..-..||.+.+||++.|+..+
T Consensus 19 ~~i~qF~~iTg-------~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAG-------CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHC-------CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcC-------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56676664432 357788999999999999998654
No 37
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.52 E-value=1.1e+02 Score=21.61 Aligned_cols=44 Identities=25% Similarity=0.184 Sum_probs=34.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHH
Q psy13101 55 CLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESL 106 (420)
Q Consensus 55 ~l~~l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l 106 (420)
+|..|++.++++|+.|-.+ . .++....+=|++++.|+++|..=|
T Consensus 11 ~l~~ls~se~e~V~~LvsM----G----Fs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 11 ELQMLSPSERQCVETVVNM----G----YSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHTCCHHHHHHHHHHHHH----H----CCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHhhCcchHHHHHHHHHc----C----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5677899999998877654 1 357778888999999999998543
No 38
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=26.39 E-value=99 Score=26.47 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=35.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHH
Q psy13101 55 CLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLS 107 (420)
Q Consensus 55 ~l~~l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~ 107 (420)
....++++++++|+.|.++ - .+....++=|.+|++|.+.|...|-
T Consensus 122 ~~i~~tpee~eaI~rL~~m-------G-F~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 122 FQVDYTPEDDQAISRLCEL-------G-FERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp ECCCCCHHHHHHHHHHHTT-------T-CCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccCCCCccHHHHHHHHHHc-------C-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3568899999998877644 1 3577777889999999999987764
No 39
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=26.39 E-value=1.4e+02 Score=23.65 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECC---CCCcCCccchhHHHHHHHHHHHHhhcccccceEEE
Q psy13101 232 VGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLE---GLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLI 308 (420)
Q Consensus 232 ~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~---g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~I 308 (420)
++.+++.. ++..+|..+.. .+ . ..+.+++|+. |+++..+ -.-+++...|. ..+.++=|
T Consensus 30 lt~~d~~~-l~~~l~~~l~~-------~~-~-~~i~ll~~~~~f~G~~~~a~--------~~d~k~~~~h~-~~~~RiAv 90 (126)
T 2q3l_A 30 LTHEDYEQ-MTPLLESALAG-------IK-T-PEIVALIDITELDGLSLHAA--------WDDLKLGLKHG-KEFKRVAI 90 (126)
T ss_dssp ECHHHHHH-HHHHHHHHTTT-------CC-S-SCEEEEEEEEEEEEECHHHH--------HHHHHHHHHHG-GGEEEEEE
T ss_pred ECHHHHHH-HHHHHHHHHHh-------CC-C-ceEEEEEEecCCCCCCHHHH--------HHHHHhhhhHH-hcCCEEEE
Confidence 35566655 55666654421 11 1 1156666654 4443332 22233223443 78899999
Q ss_pred EcCCCcHHHHHHHhhhccChh
Q psy13101 309 IRAPRVFPILWTLVSTFIDET 329 (420)
Q Consensus 309 vN~P~~f~~~~~lvkpfL~~~ 329 (420)
|-.+.+...+.++..+|++..
T Consensus 91 V~d~~W~~~~~~~~~~~~~~e 111 (126)
T 2q3l_A 91 IGQGELQEWATRVANWFTPGE 111 (126)
T ss_dssp ECCSHHHHHHHHHHHHHCSSE
T ss_pred EcChHHHHHHHHHHhhccCCc
Confidence 999999999999999997664
No 40
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=24.83 E-value=2e+02 Score=23.78 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHhhhhhCCCCC-ChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcC
Q psy13101 58 DLTPMQESKLIQFKKQFGYLQKGKLP-SDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHN 117 (420)
Q Consensus 58 ~l~~~~~~~l~~lr~~l~~~~~~~~~-dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~ 117 (420)
+||+++++.|.+|++-.......... ...-|...+.+-+||-.++.+.+.+...-+.+..
T Consensus 45 ~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e~~ 105 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKMANEQIARQ 105 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999877654332111 2345677788999999999999888877666553
No 41
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=24.67 E-value=1.2e+02 Score=23.88 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHhhhhhCCCCC-ChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcC
Q psy13101 58 DLTPMQESKLIQFKKQFGYLQKGKLP-SDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHN 117 (420)
Q Consensus 58 ~l~~~~~~~l~~lr~~l~~~~~~~~~-dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~ 117 (420)
+||++|++.+..|++........... +...|...+.+-+||-.+|.+.+....+-..+..
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~ad~FDEaaar~l~~~~~~~~~e~~ 77 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQRKANM 77 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHSSSSCCHHHHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999876654322111 2346778888999999999888887766555543
No 42
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.85 E-value=2.3e+02 Score=21.11 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13101 64 ESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQS 109 (420)
Q Consensus 64 ~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~ 109 (420)
+++|++|.++ + .+.....+=|+++++|+++|...|..+
T Consensus 30 ee~I~~Lv~M----G----F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 30 QESINQLVYM----G----FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHHH----S----CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc----C----CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3456666554 1 357777888999999999999877654
Done!