RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13101
(420 letters)
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 128 bits (325), Expect = 6e-36
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
Query: 200 YFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKY 259
G H D+E RP+ + G D K + L++ + V E L L E
Sbjct: 1 GGKGYLHGRDKEGRPVLYLRPGRHDPK----KSSLEELVRFLVLVLERALLLLPE----- 51
Query: 260 SRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILW 319
I +++ID++GL++ ++ + + L +I++I++ NYPE LG++LI+ AP +F ++W
Sbjct: 52 -GQIEGITVIIDMKGLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIW 110
Query: 320 TLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGG 363
L+ F+D TR K + ++ + L+ YI + +P GG
Sbjct: 111 KLIKPFLDPKTREKIHFHKNSNLEE---LLKYIPPEQLPKEYGG 151
Score = 27.2 bits (61), Expect = 9.8
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 134 YFTGTWHHCDREMRPLYLFKLGVMDVK 160
G H D+E RP+ + G D K
Sbjct: 1 GGKGYLHGRDKEGRPVLYLRPGRHDPK 27
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 120 bits (302), Expect = 2e-32
Identities = 55/173 (31%), Positives = 100/173 (57%), Gaps = 16/173 (9%)
Query: 194 PPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTE 253
+++AY G + D++ RP+ + + G D LK+V + LL+ ++V E+ L
Sbjct: 2 LELLKAYIPGGRGY-DKDGRPVLIERAGRFD----LKSVTLEELLRYLVYVLEKILQE-- 54
Query: 254 EYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPR 313
K + I ++++ DL+GL+M + P + L +I++I++ +YPE LG+V II P
Sbjct: 55 ---EKKTGGIEGFTVIFDLKGLSMSN---PDLSVLRKILKILQDHYPERLGKVYIINPPW 108
Query: 314 VFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCE 366
F +LW ++ F+DE TR K + GND + L++YI+++ +P+ LGG +
Sbjct: 109 FFRVLWKIIKPFLDEKTREKI-RFVGNDSKE--ELLEYIDKEQLPEELGGTLD 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 107 bits (269), Expect = 7e-28
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 15/158 (9%)
Query: 206 HHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITT 265
D+E RP+ + + G D K++ + LL+ ++ E+ L +E +
Sbjct: 14 GGRDKEGRPVLIIRAGNKD---LSKSLDSEELLRYLVYTLEKLLQEDDEQ-------VEG 63
Query: 266 WSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTF 325
+ ++IDL+GL++ HL P L +I++I++ NYPE L V II P F +LW +V F
Sbjct: 64 FVVIIDLKGLSLSHLL-PDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPF 122
Query: 326 IDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGG 363
+ E TR K V+ G+D + L+ YI+++ +P+ GG
Sbjct: 123 LSEKTRKKI-VFLGSDKEE---LLKYIDKEQLPEEYGG 156
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain. This
all-alpha domain is found to the N-terminus of
pfam00650.
Length = 48
Score = 35.3 bits (82), Expect = 0.003
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 64 ESKLIQFKKQFG--YLQKGKLPSDSTLLRFLKSKDFNLEK 101
E KL + +++ D+ LLRFL+++ F++EK
Sbjct: 1 EEKLEELREKLQELKDLLKDKLDDAFLLRFLRARKFDVEK 40
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain.
Length = 48
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 64 ESKLIQFKKQFG--YLQKGKLPSDSTLLRFLKSKDFNLEK 101
E L + ++ D+ LLRFL+++ F++EK
Sbjct: 1 EEALEELRELLEKHPDLLPPRLDDAFLLRFLRARKFDVEK 40
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 30.4 bits (69), Expect = 0.85
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 35/165 (21%)
Query: 209 DREMRPLYLF------KLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRP 262
D+E RP+ +F + D+ L + L L+ + +G
Sbjct: 9 DKEGRPVLVFDAKRLPASDLDDLDRLLFYL----LSILSEELKPKGF------------- 51
Query: 263 ITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFP-ILWTL 321
++ID G+ P L ++ +++ +P+ L V I+ L TL
Sbjct: 52 ----VVVIDHTGVTRNK---PSWSWLKKLYKLLPRAFPKNLKAVYIVHPSTFLKKFLKTL 104
Query: 322 VSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCE 366
F + K ++Y S L +YI+ +P LGG
Sbjct: 105 GRLFSSKKLFKKKVIYV----SSLSELSEYIDPTQLPLELGGVLS 145
>gnl|CDD|223820 COG0749, PolA, DNA polymerase I - 3'-5' exonuclease and polymerase
domains [DNA replication, recombination, and repair].
Length = 593
Score = 29.9 bits (68), Expect = 2.8
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 5 DKNWTEGADYERVESPILCHDGESIQGSHVTSRDEHLELEFQLEDDYIHR 54
ADY ++E IL H S+DE L F E + IH
Sbjct: 362 KGYTLISADYSQIELRILAHL----------SQDEGLLRAFT-EGEDIHT 400
>gnl|CDD|183101 PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase;
Provisional.
Length = 254
Score = 28.7 bits (64), Expect = 5.1
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 352 IEQQYIPDFLGGPCETKLPEGGLLPFLLPFCRR 384
+EQQY P E ++ EGGLL LLP C
Sbjct: 149 VEQQYAPSH-----EVQVEEGGLLSALLPECSN 176
>gnl|CDD|146353 pfam03673, UPF0128, Uncharacterized protein family (UPF0128). The
members of this family are about 240 amino acids in
length. The proteins are as yet uncharacterized.
Length = 221
Score = 28.6 bits (64), Expect = 5.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 81 KLPSDSTLLRFLKSKDFN-LEKGRESLSQSLTWRKRHNVDQILQQYEA-PPVVR 132
+ P+ + LL FLK N L K +++ + + K+ V+ YE PPV R
Sbjct: 107 REPARTLLLAFLKKHKLNQLIKAIKNVGLTTEFYKQRGVESKPLPYEELPPVAR 160
>gnl|CDD|224721 COG1808, COG1808, Predicted membrane protein [Function unknown].
Length = 334
Score = 28.1 bits (63), Expect = 8.0
Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 16/128 (12%)
Query: 258 KYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVET-----NYPETLGRVLIIRAP 312
I + L+ L++ I EI+ N P + +II AP
Sbjct: 5 SEYSRIEFRNKLLSELELSISKY------IFRLIAEIIAWIGLVLNSPAVIIGAMII-AP 57
Query: 313 RVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEG 372
+ PIL V T I + + L G G L+ + +
Sbjct: 58 LMGPILKNSVGTVIGD----RELFRRGIKIVVIGCLLAIAPAALLVLLVPKTYLGPEIAA 113
Query: 373 GLLPFLLP 380
P +L
Sbjct: 114 RTSPTILD 121
>gnl|CDD|221717 pfam12694, MoCo_carrier, Putative molybdenum carrier. The
structure of proteins in this family contain central
beta strands with flanking alpha helices. The structure
is similar to that of a molybdenum cofactor carrier
protein.
Length = 145
Score = 27.1 bits (61), Expect = 9.5
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 235 DGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEI 294
DG L L G ALT E+ RK+ +P+ L++DL + + I E
Sbjct: 65 DGTLILTRGELSGGTALTVEFARKHGKPL----LVVDL----------DLPEDVEAIAEW 110
Query: 295 VETNYPETL 303
+ N L
Sbjct: 111 LRENGIRVL 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.142 0.440
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,979,825
Number of extensions: 2168777
Number of successful extensions: 1482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1474
Number of HSP's successfully gapped: 17
Length of query: 420
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 321
Effective length of database: 6,546,556
Effective search space: 2101444476
Effective search space used: 2101444476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)